Query 012363
Match_columns 465
No_of_seqs 389 out of 2374
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 07:59:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012363.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012363hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4atq_A 4-aminobutyrate transam 100.0 2.3E-72 7.9E-77 568.2 45.4 390 61-459 26-454 (456)
2 4ao9_A Beta-phenylalanine amin 100.0 4.7E-73 1.6E-77 570.6 34.9 397 16-461 29-447 (454)
3 4e3q_A Pyruvate transaminase; 100.0 1.6E-70 5.4E-75 556.7 42.9 394 62-462 24-470 (473)
4 3i5t_A Aminotransferase; pyrid 100.0 3.8E-64 1.3E-68 515.5 41.1 393 64-462 13-456 (476)
5 3hmu_A Aminotransferase, class 100.0 3.5E-64 1.2E-68 515.0 39.3 394 61-461 11-453 (472)
6 4ffc_A 4-aminobutyrate aminotr 100.0 1.6E-63 5.5E-68 508.3 43.6 393 61-462 26-451 (453)
7 3oks_A 4-aminobutyrate transam 100.0 6.7E-63 2.3E-67 503.6 42.0 390 61-459 23-450 (451)
8 3gju_A Putative aminotransfera 100.0 1.5E-62 5.2E-67 502.4 42.5 395 65-462 9-458 (460)
9 3tfu_A Adenosylmethionine-8-am 100.0 1.7E-62 5.9E-67 500.7 38.5 397 61-463 29-456 (457)
10 4a6r_A Omega transaminase; tra 100.0 2.8E-62 9.5E-67 500.3 37.4 377 80-461 32-450 (459)
11 3dod_A Adenosylmethionine-8-am 100.0 2.1E-61 7.2E-66 492.4 40.9 393 65-463 5-446 (448)
12 1z7d_A Ornithine aminotransfer 100.0 8E-61 2.7E-65 485.7 44.1 399 61-462 28-431 (433)
13 3l44_A Glutamate-1-semialdehyd 100.0 1.4E-60 4.8E-65 484.3 41.2 400 39-463 5-433 (434)
14 2oat_A Ornithine aminotransfer 100.0 3.1E-60 1.1E-64 482.1 43.1 394 61-459 39-438 (439)
15 3n5m_A Adenosylmethionine-8-am 100.0 1.6E-60 5.6E-65 486.4 41.2 394 62-459 9-451 (452)
16 3k28_A Glutamate-1-semialdehyd 100.0 1.4E-60 4.9E-65 483.6 39.6 398 38-461 3-428 (429)
17 3nx3_A Acoat, acetylornithine 100.0 6.9E-60 2.4E-64 473.3 42.0 384 70-459 8-394 (395)
18 4e77_A Glutamate-1-semialdehyd 100.0 2.8E-59 9.5E-64 474.2 39.6 394 41-459 6-428 (429)
19 2yky_A Beta-transaminase; tran 100.0 2.7E-64 9.2E-69 510.5 0.0 384 40-461 55-461 (465)
20 3fq8_A Glutamate-1-semialdehyd 100.0 1.2E-58 4.2E-63 469.1 39.9 395 40-459 4-426 (427)
21 4a0g_A Adenosylmethionine-8-am 100.0 5.1E-60 1.7E-64 509.4 29.2 394 66-461 335-829 (831)
22 2pb2_A Acetylornithine/succiny 100.0 3.1E-58 1.1E-62 465.0 40.4 395 61-460 20-418 (420)
23 3i4j_A Aminotransferase, class 100.0 1.9E-58 6.4E-63 468.2 38.6 386 72-460 3-428 (430)
24 3dxv_A Alpha-amino-epsilon-cap 100.0 1.5E-57 5.1E-62 462.8 39.2 373 79-461 24-426 (439)
25 2epj_A Glutamate-1-semialdehyd 100.0 3.9E-56 1.3E-60 451.7 38.7 394 41-461 11-432 (434)
26 2e7u_A Glutamate-1-semialdehyd 100.0 2.8E-56 9.6E-61 451.4 37.4 392 40-457 4-424 (424)
27 1zod_A DGD, 2,2-dialkylglycine 100.0 1E-55 3.5E-60 448.5 39.5 388 63-460 7-432 (433)
28 2cjg_A L-lysine-epsilon aminot 100.0 4.4E-56 1.5E-60 453.0 36.9 393 62-460 17-448 (449)
29 4adb_A Succinylornithine trans 100.0 1.5E-54 5.3E-59 435.8 44.2 388 71-463 12-403 (406)
30 3ruy_A Ornithine aminotransfer 100.0 2.5E-54 8.6E-59 432.4 40.3 387 65-457 3-391 (392)
31 2cy8_A D-phgat, D-phenylglycin 100.0 7.3E-55 2.5E-59 444.8 35.4 391 40-462 12-437 (453)
32 1ohv_A 4-aminobutyrate aminotr 100.0 6.2E-55 2.1E-59 446.7 33.7 392 61-460 26-471 (472)
33 3a8u_X Omega-amino acid--pyruv 100.0 2.6E-54 8.9E-59 440.2 36.4 375 80-460 32-447 (449)
34 2eo5_A 419AA long hypothetical 100.0 5.2E-54 1.8E-58 434.1 37.9 377 62-460 3-418 (419)
35 1s0a_A Adenosylmethionine-8-am 100.0 1.7E-52 5.9E-57 424.3 41.5 384 71-461 11-425 (429)
36 1sff_A 4-aminobutyrate aminotr 100.0 9.9E-52 3.4E-56 418.0 41.5 391 63-462 5-426 (426)
37 2ord_A Acoat, acetylornithine 100.0 3.2E-50 1.1E-54 403.4 41.0 377 76-459 18-396 (397)
38 1vef_A Acetylornithine/acetyl- 100.0 1.4E-49 4.9E-54 398.3 38.1 380 65-457 9-394 (395)
39 2eh6_A Acoat, acetylornithine 100.0 8.1E-48 2.8E-52 382.7 42.3 369 74-456 4-374 (375)
40 3l8a_A METC, putative aminotra 100.0 5.3E-41 1.8E-45 339.1 22.1 358 76-458 37-420 (421)
41 2w8t_A SPT, serine palmitoyltr 100.0 5.7E-38 1.9E-42 317.5 35.2 346 79-463 45-418 (427)
42 3tqx_A 2-amino-3-ketobutyrate 100.0 1.6E-36 5.4E-41 303.6 30.3 345 77-460 23-396 (399)
43 3fdb_A Beta C-S lyase, putativ 100.0 7.2E-37 2.4E-41 303.8 23.6 343 85-460 10-376 (377)
44 1fc4_A 2-amino-3-ketobutyrate 100.0 1.4E-35 4.8E-40 297.1 30.7 348 77-462 24-399 (401)
45 3dzz_A Putative pyridoxal 5'-p 100.0 2.8E-36 9.5E-41 301.0 24.9 355 82-461 11-390 (391)
46 1d2f_A MALY protein; aminotran 100.0 7.5E-35 2.6E-39 290.9 30.5 353 83-460 8-389 (390)
47 3kax_A Aminotransferase, class 100.0 5.1E-35 1.8E-39 291.0 27.5 351 81-457 6-382 (383)
48 3a2b_A Serine palmitoyltransfe 100.0 2.2E-34 7.6E-39 288.2 31.0 342 79-461 25-393 (398)
49 1c7n_A Cystalysin; transferase 100.0 2.8E-35 9.6E-40 294.8 23.7 356 83-463 9-396 (399)
50 4dq6_A Putative pyridoxal phos 100.0 3.6E-35 1.2E-39 292.9 22.3 349 82-457 11-390 (391)
51 3kki_A CAI-1 autoinducer synth 100.0 2.7E-35 9.2E-40 296.1 20.7 335 86-460 47-404 (409)
52 3aow_A Putative uncharacterize 100.0 7.7E-34 2.6E-38 288.8 29.5 338 98-461 76-446 (448)
53 1bs0_A Protein (8-amino-7-oxon 100.0 1.3E-33 4.3E-38 281.3 29.7 344 73-456 15-383 (384)
54 2zc0_A Alanine glyoxylate tran 100.0 6.1E-34 2.1E-38 285.8 27.4 336 97-462 33-406 (407)
55 3nra_A Aspartate aminotransfer 100.0 6.3E-35 2.2E-39 292.8 20.2 355 83-461 21-406 (407)
56 3jtx_A Aminotransferase; NP_28 100.0 7.1E-34 2.4E-38 284.2 24.0 348 79-457 11-395 (396)
57 3ly1_A Putative histidinol-pho 100.0 1.8E-33 6.1E-38 277.0 26.5 329 87-459 5-351 (354)
58 3ftb_A Histidinol-phosphate am 100.0 4E-33 1.4E-37 275.1 29.0 338 81-459 8-360 (361)
59 2zyj_A Alpha-aminodipate amino 100.0 4.8E-34 1.6E-38 285.8 22.4 337 97-461 31-394 (397)
60 1vp4_A Aminotransferase, putat 100.0 7.3E-34 2.5E-38 287.1 23.8 344 97-463 42-421 (425)
61 3euc_A Histidinol-phosphate am 100.0 2.9E-33 9.8E-38 277.0 26.9 328 97-458 29-366 (367)
62 1yiz_A Kynurenine aminotransfe 100.0 5.1E-33 1.7E-37 281.2 29.2 338 99-458 38-427 (429)
63 3dyd_A Tyrosine aminotransfera 100.0 1.2E-32 4.1E-37 278.4 30.2 344 93-462 49-426 (427)
64 1lc5_A COBD, L-threonine-O-3-p 100.0 3.6E-33 1.2E-37 276.1 25.7 325 94-461 20-361 (364)
65 3ffh_A Histidinol-phosphate am 100.0 1.1E-32 3.8E-37 272.3 28.0 316 98-456 32-362 (363)
66 2x5d_A Probable aminotransfera 100.0 1.2E-32 4E-37 277.1 28.6 338 95-461 34-399 (412)
67 3h14_A Aminotransferase, class 100.0 1.3E-32 4.5E-37 274.7 28.6 329 96-461 29-383 (391)
68 3b46_A Aminotransferase BNA3; 100.0 5.6E-33 1.9E-37 282.5 25.5 334 96-455 55-442 (447)
69 3ezs_A Aminotransferase ASPB; 100.0 5.9E-33 2E-37 275.6 25.0 324 96-459 22-374 (376)
70 3b1d_A Betac-S lyase; HET: PLP 100.0 2.1E-36 7.1E-41 302.5 0.0 352 82-458 13-391 (392)
71 2dou_A Probable N-succinyldiam 100.0 4.4E-33 1.5E-37 276.6 22.0 330 96-457 23-375 (376)
72 2z61_A Probable aspartate amin 100.0 2.2E-32 7.4E-37 271.1 26.7 323 96-458 27-369 (370)
73 1j32_A Aspartate aminotransfer 100.0 6.8E-32 2.3E-36 269.2 29.3 338 96-460 28-387 (388)
74 3g0t_A Putative aminotransfera 100.0 2.2E-32 7.5E-37 277.1 25.2 340 87-459 33-436 (437)
75 1gd9_A Aspartate aminotransfer 100.0 7.7E-32 2.6E-36 268.9 27.6 338 99-461 27-387 (389)
76 1o4s_A Aspartate aminotransfer 100.0 7.8E-32 2.7E-36 269.0 27.6 333 96-458 39-387 (389)
77 1v2d_A Glutamine aminotransfer 100.0 9.1E-32 3.1E-36 267.6 26.8 327 100-462 27-373 (381)
78 2o1b_A Aminotransferase, class 100.0 2.7E-32 9.1E-37 273.9 23.0 336 95-459 44-402 (404)
79 3ele_A Amino transferase; RER0 100.0 1.3E-31 4.4E-36 268.1 27.7 332 97-461 34-397 (398)
80 3fvs_A Kynurenine--oxoglutarat 100.0 1.5E-31 5E-36 269.8 28.0 340 99-459 29-421 (422)
81 1u08_A Hypothetical aminotrans 100.0 2.5E-31 8.6E-36 264.9 28.7 330 99-455 31-385 (386)
82 3hdo_A Histidinol-phosphate am 100.0 1E-31 3.5E-36 265.3 25.5 322 95-459 23-354 (360)
83 3cq5_A Histidinol-phosphate am 100.0 2.2E-31 7.4E-36 263.9 27.2 322 101-458 33-366 (369)
84 2gb3_A Aspartate aminotransfer 100.0 4.4E-31 1.5E-35 265.3 29.3 329 96-462 41-404 (409)
85 1xi9_A Putative transaminase; 100.0 2.9E-31 1E-35 266.3 27.4 339 96-461 36-404 (406)
86 3piu_A 1-aminocyclopropane-1-c 100.0 1.1E-31 3.9E-36 271.9 23.1 340 92-461 30-433 (435)
87 3fkd_A L-threonine-O-3-phospha 100.0 3.1E-31 1.1E-35 260.7 24.8 325 85-459 2-341 (350)
88 2o0r_A RV0858C (N-succinyldiam 100.0 3.2E-31 1.1E-35 266.6 25.1 334 100-461 27-397 (411)
89 3e2y_A Kynurenine-oxoglutarate 100.0 1.5E-30 5.1E-35 261.3 28.0 337 98-455 23-408 (410)
90 3get_A Histidinol-phosphate am 100.0 6.6E-31 2.3E-35 259.8 24.7 321 98-457 30-364 (365)
91 3op7_A Aminotransferase class 100.0 3.5E-30 1.2E-34 255.6 28.6 311 121-463 46-374 (375)
92 1fg7_A Histidinol phosphate am 100.0 1.3E-30 4.4E-35 257.1 24.2 315 98-455 29-353 (356)
93 3qgu_A LL-diaminopimelate amin 100.0 1.3E-30 4.4E-35 265.2 24.9 341 95-460 66-440 (449)
94 1b5p_A Protein (aspartate amin 100.0 7.1E-30 2.4E-34 254.5 29.7 332 97-458 30-383 (385)
95 1bw0_A TAT, protein (tyrosine 100.0 4E-30 1.4E-34 258.9 27.2 342 98-462 33-415 (416)
96 2bwn_A 5-aminolevulinate synth 100.0 1.8E-29 6.1E-34 252.8 30.9 328 96-460 44-400 (401)
97 2x5f_A Aspartate_tyrosine_phen 100.0 1.3E-31 4.4E-36 271.0 15.0 333 98-460 47-429 (430)
98 2q7w_A Aspartate aminotransfer 100.0 7.1E-31 2.4E-35 262.4 20.2 327 92-456 20-395 (396)
99 3ez1_A Aminotransferase MOCR f 100.0 1.2E-30 4.2E-35 263.2 18.9 344 100-462 27-417 (423)
100 1iay_A ACC synthase 2, 1-amino 100.0 8.9E-30 3E-34 257.3 25.3 331 99-459 37-426 (428)
101 1ajs_A Aspartate aminotransfer 100.0 1.8E-30 6.2E-35 261.0 19.8 335 96-460 28-411 (412)
102 3d6k_A Putative aminotransfera 100.0 2.8E-30 9.7E-35 260.6 20.0 352 100-462 34-420 (422)
103 1kmj_A Selenocysteine lyase; p 100.0 1.4E-28 4.8E-33 246.2 31.6 331 96-460 20-405 (406)
104 2r2n_A Kynurenine/alpha-aminoa 100.0 4.8E-29 1.6E-33 251.8 27.5 302 138-460 80-424 (425)
105 3g7q_A Valine-pyruvate aminotr 100.0 2E-29 6.9E-34 253.6 24.6 297 142-463 81-416 (417)
106 1elu_A L-cysteine/L-cystine C- 100.0 2E-29 6.8E-34 251.1 24.2 327 96-455 15-387 (390)
107 3ppl_A Aspartate aminotransfer 100.0 3.9E-30 1.3E-34 259.9 19.1 353 100-462 35-422 (427)
108 3ei9_A LL-diaminopimelate amin 100.0 2.3E-29 7.8E-34 254.7 24.2 338 96-459 54-427 (432)
109 3f9t_A TDC, L-tyrosine decarbo 100.0 1.2E-28 4E-33 245.7 27.9 322 114-458 41-396 (397)
110 3rq1_A Aminotransferase class 100.0 1.6E-29 5.3E-34 254.7 21.3 338 97-462 37-417 (418)
111 3asa_A LL-diaminopimelate amin 100.0 4.7E-29 1.6E-33 249.9 23.9 327 97-461 32-394 (400)
112 2ay1_A Aroat, aromatic amino a 100.0 1.3E-29 4.4E-34 253.2 19.6 332 97-456 25-392 (394)
113 3t18_A Aminotransferase class 100.0 6.2E-29 2.1E-33 249.9 23.8 334 97-462 36-412 (413)
114 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 9.4E-30 3.2E-34 251.8 16.8 321 98-460 9-370 (371)
115 3if2_A Aminotransferase; YP_26 100.0 1.3E-28 4.6E-33 249.9 23.9 298 142-463 89-443 (444)
116 1t3i_A Probable cysteine desul 100.0 9.4E-28 3.2E-32 241.4 29.1 332 96-462 25-415 (420)
117 2dr1_A PH1308 protein, 386AA l 100.0 9.3E-28 3.2E-32 238.6 27.0 327 98-463 20-382 (386)
118 3p1t_A Putative histidinol-pho 100.0 2.1E-27 7.1E-32 231.9 28.5 314 96-457 14-334 (337)
119 3lvm_A Cysteine desulfurase; s 100.0 1.5E-27 5.1E-32 240.4 27.8 332 96-462 21-401 (423)
120 4f4e_A Aromatic-amino-acid ami 100.0 5.5E-28 1.9E-32 243.7 23.7 329 98-457 49-419 (420)
121 1eg5_A Aminotransferase; PLP-d 100.0 3.4E-27 1.1E-31 234.3 28.5 328 99-463 3-379 (384)
122 1qz9_A Kynureninase; kynurenin 100.0 1.1E-26 3.9E-31 233.4 31.7 331 96-461 27-403 (416)
123 3f6t_A Aspartate aminotransfer 100.0 4.4E-28 1.5E-32 251.3 20.0 336 110-462 111-527 (533)
124 3ke3_A Putative serine-pyruvat 100.0 2E-27 6.8E-32 236.3 23.7 332 91-461 5-377 (379)
125 3fsl_A Aromatic-amino-acid ami 100.0 1.9E-27 6.4E-32 237.6 23.6 333 98-456 26-396 (397)
126 1vjo_A Alanine--glyoxylate ami 100.0 1.3E-27 4.3E-32 238.6 21.9 322 96-457 32-392 (393)
127 1yaa_A Aspartate aminotransfer 100.0 1.1E-27 3.7E-32 240.8 20.6 335 97-459 28-410 (412)
128 3cai_A Possible aminotransfera 100.0 7.5E-26 2.6E-30 226.7 33.7 325 97-455 26-404 (406)
129 3kgw_A Alanine-glyoxylate amin 100.0 7.3E-28 2.5E-32 239.9 18.4 318 115-464 34-392 (393)
130 3f0h_A Aminotransferase; RER07 100.0 5E-27 1.7E-31 232.7 23.7 316 115-459 30-373 (376)
131 1uu1_A Histidinol-phosphate am 100.0 1.4E-27 4.9E-32 233.2 19.3 306 98-456 19-334 (335)
132 1svv_A Threonine aldolase; str 100.0 5.5E-27 1.9E-31 230.6 22.2 320 100-460 15-358 (359)
133 3zrp_A Serine-pyruvate aminotr 100.0 6.6E-27 2.3E-31 232.2 22.7 314 115-461 13-364 (384)
134 1m32_A 2-aminoethylphosphonate 99.9 2.2E-26 7.4E-31 226.8 24.4 324 100-460 5-365 (366)
135 3nnk_A Ureidoglycine-glyoxylat 99.9 1.3E-26 4.6E-31 232.4 22.3 309 115-461 24-391 (411)
136 1v72_A Aldolase; PLP-dependent 99.9 1.6E-26 5.5E-31 227.1 22.0 325 98-460 7-353 (356)
137 3mad_A Sphingosine-1-phosphate 99.9 1.5E-25 5.2E-30 231.7 30.3 325 114-463 107-472 (514)
138 1ax4_A Tryptophanase; tryptoph 99.9 1.3E-26 4.6E-31 236.6 22.0 340 96-461 41-442 (467)
139 2dkj_A Serine hydroxymethyltra 99.9 9.9E-27 3.4E-31 233.1 20.1 328 98-459 23-387 (407)
140 2rfv_A Methionine gamma-lyase; 99.9 2.5E-26 8.6E-31 229.9 22.2 310 116-456 39-396 (398)
141 4hvk_A Probable cysteine desul 99.9 1.3E-25 4.6E-30 222.3 27.1 322 100-462 3-375 (382)
142 3e9k_A Kynureninase; kynurenin 99.9 1.1E-26 3.8E-31 237.2 19.5 339 96-462 66-463 (465)
143 4eb5_A Probable cysteine desul 99.9 1.9E-25 6.3E-30 221.7 26.8 325 100-462 3-375 (382)
144 2huf_A Alanine glyoxylate amin 99.9 4E-26 1.4E-30 227.6 21.0 330 95-462 16-385 (393)
145 1jg8_A L-ALLO-threonine aldola 99.9 6.2E-25 2.1E-29 215.3 27.5 325 98-460 3-346 (347)
146 2z9v_A Aspartate aminotransfer 99.9 1.1E-25 3.7E-30 224.3 22.3 326 98-461 9-372 (392)
147 3isl_A Purine catabolism prote 99.9 1.1E-25 3.9E-30 225.9 22.4 317 111-461 14-391 (416)
148 1iug_A Putative aspartate amin 99.9 2.4E-25 8.3E-30 218.3 23.5 303 115-461 12-349 (352)
149 2ch1_A 3-hydroxykynurenine tra 99.9 1.2E-25 4.1E-30 224.4 21.3 315 115-461 29-384 (396)
150 1cs1_A CGS, protein (cystathio 99.9 8.4E-25 2.9E-29 217.9 27.1 289 133-456 45-383 (386)
151 1e5e_A MGL, methionine gamma-l 99.9 4.3E-25 1.5E-29 221.3 24.9 291 136-461 58-396 (404)
152 2oqx_A Tryptophanase; lyase, p 99.9 3.3E-26 1.1E-30 233.7 16.8 341 97-461 40-443 (467)
153 3vax_A Putative uncharacterize 99.9 8.1E-26 2.8E-30 225.9 19.1 327 92-459 15-399 (400)
154 2yrr_A Aminotransferase, class 99.9 3.5E-26 1.2E-30 224.2 16.2 304 115-459 11-352 (353)
155 3a9z_A Selenocysteine lyase; P 99.9 1.4E-24 4.6E-29 219.5 27.4 344 96-462 17-430 (432)
156 2ez2_A Beta-tyrosinase, tyrosi 99.9 1.6E-24 5.4E-29 220.6 27.5 336 96-461 40-432 (456)
157 2oga_A Transaminase; PLP-depen 99.9 5.7E-25 1.9E-29 220.1 23.0 319 98-462 30-398 (399)
158 3tcm_A Alanine aminotransferas 99.9 4.3E-25 1.5E-29 227.3 21.1 323 115-462 107-496 (500)
159 1gc0_A Methionine gamma-lyase; 99.9 2.4E-24 8.4E-29 215.4 26.0 292 134-456 59-397 (398)
160 2zy4_A L-aspartate beta-decarb 99.9 2.2E-25 7.4E-30 231.2 18.9 341 100-461 106-523 (546)
161 2cb1_A O-acetyl homoserine sul 99.9 5.1E-24 1.7E-28 214.1 28.3 304 111-455 29-411 (412)
162 3qhx_A Cystathionine gamma-syn 99.9 2E-24 6.9E-29 215.5 24.9 285 132-453 58-391 (392)
163 3meb_A Aspartate aminotransfer 99.9 6.2E-25 2.1E-29 223.2 20.6 290 142-460 96-444 (448)
164 2vi8_A Serine hydroxymethyltra 99.9 7.5E-25 2.6E-29 219.2 20.6 329 99-461 25-388 (405)
165 3mc6_A Sphingosine-1-phosphate 99.9 2.7E-24 9.2E-29 221.4 25.3 328 114-463 75-440 (497)
166 7aat_A Aspartate aminotransfer 99.9 3.2E-24 1.1E-28 214.6 25.1 331 100-457 30-400 (401)
167 4eu1_A Mitochondrial aspartate 99.9 3.3E-25 1.1E-29 222.4 16.3 326 99-457 42-408 (409)
168 3uwc_A Nucleotide-sugar aminot 99.9 1.7E-24 5.8E-29 214.4 21.1 295 119-460 21-371 (374)
169 3ihj_A Alanine aminotransferas 99.9 6.6E-24 2.3E-28 218.1 25.1 326 115-462 102-495 (498)
170 3acz_A Methionine gamma-lyase; 99.9 9.9E-24 3.4E-28 210.3 24.7 309 111-458 31-387 (389)
171 1mdo_A ARNB aminotransferase; 99.9 8.1E-24 2.8E-28 210.9 23.8 303 116-460 19-386 (393)
172 2fnu_A Aminotransferase; prote 99.9 1.8E-23 6.3E-28 206.8 26.0 308 114-461 10-373 (375)
173 3lws_A Aromatic amino acid bet 99.9 6.2E-25 2.1E-29 216.2 15.0 312 112-457 15-356 (357)
174 1pff_A Methionine gamma-lyase; 99.9 1.2E-23 4E-28 204.9 22.7 281 144-456 2-330 (331)
175 3k7y_A Aspartate aminotransfer 99.9 1E-23 3.5E-28 210.7 22.3 332 99-459 30-404 (405)
176 3nyt_A Aminotransferase WBPE; 99.9 8.4E-24 2.9E-28 209.1 21.5 312 111-456 6-360 (367)
177 2po3_A 4-dehydrase; external a 99.9 1.4E-22 4.7E-27 204.4 30.5 312 102-461 20-387 (424)
178 3pj0_A LMO0305 protein; struct 99.9 1.7E-24 5.7E-29 213.2 16.0 313 109-456 22-358 (359)
179 2bkw_A Alanine-glyoxylate amin 99.9 6E-24 2E-28 211.0 20.1 311 115-460 16-384 (385)
180 3frk_A QDTB; aminotransferase, 99.9 1.1E-23 3.6E-28 208.8 21.6 309 111-458 7-366 (373)
181 3h7f_A Serine hydroxymethyltra 99.9 1.1E-23 3.8E-28 213.9 21.2 320 115-460 57-414 (447)
182 2aeu_A Hypothetical protein MJ 99.9 1.3E-23 4.4E-28 208.3 21.1 319 99-462 29-373 (374)
183 1wyu_B Glycine dehydrogenase s 99.9 1.5E-22 5.2E-27 207.0 29.3 315 112-459 75-440 (474)
184 3ndn_A O-succinylhomoserine su 99.9 2.3E-23 7.7E-28 209.0 22.6 287 132-457 73-413 (414)
185 3ecd_A Serine hydroxymethyltra 99.9 3.5E-23 1.2E-27 208.3 23.9 315 115-460 44-397 (425)
186 1b9h_A AHBA synthase, protein 99.9 9.5E-23 3.3E-27 202.9 25.6 306 117-459 17-387 (388)
187 3dr4_A Putative perosamine syn 99.9 1.6E-23 5.5E-28 208.8 19.9 304 117-457 36-390 (391)
188 1ibj_A CBL, cystathionine beta 99.9 1.8E-24 6.2E-29 219.8 13.1 311 112-460 101-462 (464)
189 3gbx_A Serine hydroxymethyltra 99.9 9E-24 3.1E-28 212.3 15.3 314 115-460 42-396 (420)
190 3cog_A Cystathionine gamma-lya 99.9 1.8E-22 6.2E-27 202.0 23.1 289 135-457 62-399 (403)
191 3nmy_A Xometc, cystathionine g 99.9 1.2E-22 4E-27 202.9 21.5 241 132-407 59-321 (400)
192 3ffr_A Phosphoserine aminotran 99.9 4.2E-22 1.4E-26 195.9 24.2 300 115-457 15-361 (362)
193 2c81_A Glutamine-2-deoxy-scyll 99.9 1.7E-21 5.9E-26 195.9 28.5 312 115-462 14-416 (418)
194 3n0l_A Serine hydroxymethyltra 99.9 7.2E-22 2.5E-26 198.3 25.1 315 115-460 37-389 (417)
195 1o69_A Aminotransferase; struc 99.9 3.7E-22 1.3E-26 199.3 22.3 306 116-458 11-385 (394)
196 4h51_A Aspartate aminotransfer 99.9 3.3E-22 1.1E-26 200.0 20.9 323 117-463 65-420 (420)
197 1n8p_A Cystathionine gamma-lya 99.9 4.1E-22 1.4E-26 198.8 21.4 284 134-456 49-391 (393)
198 1qgn_A Protein (cystathionine 99.9 9E-22 3.1E-26 198.6 23.4 288 132-459 106-444 (445)
199 2qma_A Diaminobutyrate-pyruvat 99.9 1.2E-20 4E-25 194.2 28.9 337 95-460 98-496 (497)
200 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.9 1.4E-20 4.8E-25 190.4 27.7 326 96-458 29-434 (437)
201 2ctz_A O-acetyl-L-homoserine s 99.9 2.3E-20 7.9E-25 187.9 27.6 168 132-329 50-221 (421)
202 3b8x_A WBDK, pyridoxamine 5-ph 99.9 7.9E-20 2.7E-24 182.0 30.6 305 115-453 13-389 (390)
203 3bwn_A AT1G70560, L-tryptophan 99.9 3.6E-22 1.2E-26 199.2 12.7 274 143-459 71-386 (391)
204 2fq6_A Cystathionine beta-lyas 99.9 8.3E-21 2.8E-25 190.3 19.3 292 131-455 73-413 (415)
205 2hox_A ALLIIN lyase 1; cystein 99.9 2.3E-21 8E-26 195.4 14.7 317 97-458 55-423 (427)
206 2c0r_A PSAT, phosphoserine ami 99.9 2.5E-20 8.4E-25 183.7 20.7 316 97-460 3-361 (362)
207 2x3l_A ORN/Lys/Arg decarboxyla 99.9 3.2E-21 1.1E-25 195.5 14.3 284 138-461 55-354 (446)
208 2dgk_A GAD-beta, GADB, glutama 99.8 4.4E-19 1.5E-23 180.3 29.3 327 115-463 54-437 (452)
209 3hbx_A GAD 1, glutamate decarb 99.8 4.4E-19 1.5E-23 182.4 29.0 330 114-464 67-448 (502)
210 1w23_A Phosphoserine aminotran 99.8 4.5E-20 1.6E-24 181.4 19.8 310 115-459 14-359 (360)
211 2okj_A Glutamate decarboxylase 99.8 9.5E-19 3.3E-23 180.2 29.8 298 142-460 134-502 (504)
212 2z67_A O-phosphoseryl-tRNA(SEC 99.8 1.5E-19 5.2E-24 183.8 22.3 295 142-457 135-455 (456)
213 2jis_A Cysteine sulfinic acid 99.8 1.4E-18 4.7E-23 179.5 28.4 299 142-459 150-514 (515)
214 3ri6_A O-acetylhomoserine sulf 99.8 4.2E-19 1.4E-23 178.5 22.5 166 133-327 75-242 (430)
215 2fyf_A PSAT, phosphoserine ami 99.8 2.1E-19 7.1E-24 179.5 19.3 302 115-459 51-397 (398)
216 3ht4_A Aluminum resistance pro 99.8 4.3E-19 1.5E-23 178.5 20.7 285 115-420 36-344 (431)
217 1rv3_A Serine hydroxymethyltra 99.8 6.9E-19 2.4E-23 180.1 19.6 313 115-459 56-430 (483)
218 3ju7_A Putative PLP-dependent 99.8 1.8E-18 6.2E-23 171.4 21.8 310 115-459 14-374 (377)
219 2a7v_A Serine hydroxymethyltra 99.8 4E-18 1.4E-22 173.4 19.6 315 115-459 66-440 (490)
220 3vp6_A Glutamate decarboxylase 99.8 2.8E-17 9.5E-22 169.3 23.9 299 142-459 137-504 (511)
221 1js3_A DDC;, DOPA decarboxylas 99.8 3.3E-17 1.1E-21 167.9 24.2 324 119-462 90-476 (486)
222 4e1o_A HDC, histidine decarbox 99.8 2.1E-16 7E-21 161.7 26.2 304 142-461 120-479 (481)
223 3k40_A Aromatic-L-amino-acid d 99.7 1.4E-16 4.7E-21 162.6 24.2 304 142-462 115-473 (475)
224 1wyu_A Glycine dehydrogenase ( 99.7 1.2E-16 4E-21 161.6 21.6 281 141-457 109-437 (438)
225 3jzl_A Putative cystathionine 99.7 1.5E-16 5E-21 158.7 21.8 277 115-421 30-339 (409)
226 1c4k_A Protein (ornithine deca 99.7 2.4E-16 8.4E-21 167.2 22.6 300 139-461 172-567 (730)
227 3i16_A Aluminum resistance pro 99.7 1.5E-16 5.2E-21 159.2 18.1 277 115-420 44-355 (427)
228 3hvy_A Cystathionine beta-lyas 99.7 3.6E-16 1.2E-20 156.5 20.6 277 115-420 45-355 (427)
229 2vyc_A Biodegradative arginine 99.7 3E-15 1E-19 160.3 22.8 300 140-461 205-606 (755)
230 3e77_A Phosphoserine aminotran 99.7 1.9E-15 6.6E-20 148.5 19.2 314 112-459 21-374 (377)
231 3qm2_A Phosphoserine aminotran 99.6 1.5E-15 5.2E-20 150.0 15.7 317 98-459 27-384 (386)
232 3m5u_A Phosphoserine aminotran 99.6 5.4E-14 1.8E-18 137.6 22.6 298 115-459 16-359 (361)
233 3n75_A LDC, lysine decarboxyla 99.6 1.4E-13 4.8E-18 145.0 20.7 297 140-460 195-560 (715)
234 3hl2_A O-phosphoseryl-tRNA(SEC 99.5 4.8E-12 1.6E-16 124.4 23.0 298 147-463 124-464 (501)
235 3bc8_A O-phosphoseryl-tRNA(SEC 99.5 2.1E-12 7.3E-17 128.4 20.5 300 142-463 100-446 (450)
236 3ou5_A Serine hydroxymethyltra 99.0 1.7E-08 5.9E-13 98.9 17.7 316 115-458 66-439 (490)
237 4gqr_A Pancreatic alpha-amylas 49.6 28 0.00094 34.2 6.7 55 236-290 26-100 (496)
238 1vhx_A Putative holliday junct 47.0 36 0.0012 27.7 5.8 57 234-290 43-101 (150)
239 1tks_A 3,4-dihydroxy-2-butanon 44.9 25 0.00084 30.3 4.6 38 244-285 157-194 (204)
240 3v7e_A Ribosome-associated pro 39.4 83 0.0028 22.5 6.2 45 235-287 16-60 (82)
241 1snn_A DHBP synthase, 3,4-dihy 36.9 40 0.0014 29.6 4.7 37 244-285 176-212 (227)
242 3mio_A DHBP synthase, 3,4-dihy 36.7 45 0.0015 28.8 4.9 37 244-285 156-194 (206)
243 1ht6_A AMY1, alpha-amylase iso 35.7 39 0.0013 32.5 5.1 48 246-293 34-95 (405)
244 4aie_A Glucan 1,6-alpha-glucos 35.0 52 0.0018 32.9 6.1 47 246-292 45-105 (549)
245 1jae_A Alpha-amylase; glycosid 33.5 67 0.0023 31.6 6.5 51 242-292 32-100 (471)
246 3io5_A Recombination and repai 31.9 1.6E+02 0.0055 27.4 8.3 49 242-290 107-173 (333)
247 1g57_A DHBP synthase, 3,4-dihy 31.0 58 0.002 28.3 4.8 36 245-285 166-201 (217)
248 3e2i_A Thymidine kinase; Zn-bi 30.1 2.2E+02 0.0075 24.7 8.4 53 232-292 88-140 (219)
249 1zja_A Trehalulose synthase; s 28.2 49 0.0017 33.4 4.5 60 234-293 30-106 (557)
250 3bzy_B ESCU; auto cleavage pro 25.8 40 0.0014 24.4 2.4 21 268-288 28-48 (83)
251 1k4i_A 3,4-dihydroxy-2-butanon 25.7 73 0.0025 27.9 4.5 38 244-285 165-212 (233)
252 1k7c_A Rhamnogalacturonan acet 25.3 82 0.0028 27.3 5.0 39 246-284 125-167 (233)
253 4aee_A Alpha amylase, catalyti 24.4 39 0.0013 35.3 3.0 58 234-291 263-336 (696)
254 1xx6_A Thymidine kinase; NESG, 22.8 3.2E+02 0.011 22.8 8.1 44 234-285 70-113 (191)
255 1vko_A Inositol-3-phosphate sy 22.3 5.1E+02 0.017 25.7 10.1 21 270-290 307-327 (537)
256 1uta_A FTSN, MSGA, cell divisi 22.0 1E+02 0.0035 21.7 4.1 47 409-455 22-68 (81)
257 1lwj_A 4-alpha-glucanotransfer 21.7 66 0.0023 31.2 3.9 28 265-292 68-95 (441)
258 3t7y_A YOP proteins translocat 21.4 54 0.0018 24.5 2.4 22 267-288 42-63 (97)
259 3o63_A Probable thiamine-phosp 21.4 65 0.0022 28.6 3.4 51 235-287 46-103 (243)
260 2vt1_B Surface presentation of 20.8 57 0.002 24.2 2.4 22 267-288 27-48 (93)
261 3c01_E Surface presentation of 20.2 59 0.002 24.4 2.4 22 267-288 27-48 (98)
262 1g94_A Alpha-amylase; beta-alp 20.1 70 0.0024 31.1 3.7 26 265-290 63-88 (448)
263 2aif_A Ribosomal protein L7A; 20.1 1.8E+02 0.0062 22.9 5.5 43 236-285 47-89 (135)
264 3j21_Z 50S ribosomal protein L 20.0 1.1E+02 0.0037 22.7 4.0 42 236-285 21-62 (99)
No 1
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=100.00 E-value=2.3e-72 Score=568.19 Aligned_cols=390 Identities=33% Similarity=0.541 Sum_probs=343.1
Q ss_pred chHHHHHHHHhccccccC-CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCC
Q 012363 61 NNKEVMEAEKKLLVGTYN-RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYY 138 (465)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~-~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~ 138 (465)
.+++++++..++...++. ++|++++|++|+|+||.|||+||||+++++++++||+||+|++|+.+|++++.+... ..+
T Consensus 26 ~s~~l~~r~~~~~~~~~~~~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~ 105 (456)
T 4atq_A 26 KSQALAERRSAVVAAGVASGVPVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTHTCFMVTP 105 (456)
T ss_dssp HHHHHHHHHHHHBCTTCCCSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTTTTSC
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCeEEeeecCEEEeCCCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhccCcccCccC
Confidence 566666666666555443 579999999999999999999999999999999999999999999999998766533 345
Q ss_pred CHHHHHHHHHHHhhcC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCC
Q 012363 139 SIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH 215 (465)
Q Consensus 139 ~~~~~~la~~l~~~~~---~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~ 215 (465)
++...+|+++|.+..+ .++++|+|||+|||+.|+|+|+.+|+ |++||.++++|||++.+++++++...
T Consensus 106 ~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~---------r~~ii~~~~~yHG~t~~als~t~~~~ 176 (456)
T 4atq_A 106 YEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATG---------RDAVVAFDHAYHGRTNLTMALTAKAM 176 (456)
T ss_dssp CHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHC---------CCEEEEETTCCCCSSHHHHHHCCCCT
T ss_pred cHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhc---------CCeEEEEecccCCccccccccccCcc
Confidence 6778899999999885 67899999999999999999999985 88999999999999999988776543
Q ss_pred -cCCCCCCCCCCceEeeCC-----------CHH-------HHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q 012363 216 -YRSPFEPVMPGVNFVEYG-----------NIE-------ATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC 276 (465)
Q Consensus 216 -~~~~~~~~~~~~~~~~~~-----------d~~-------~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~ 276 (465)
+...+.+..+++..+|++ +.+ .+++.+.++++++||+||+++++|+++|+++||++|+++|
T Consensus 177 ~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc 256 (456)
T 4atq_A 177 PYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWA 256 (456)
T ss_dssp TTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHH
T ss_pred ccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHH
Confidence 444566677777777653 122 3344444568999999999999999999999999999999
Q ss_pred HHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHH
Q 012363 277 DDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAI 356 (465)
Q Consensus 277 ~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~ 356 (465)
++||++||+|||+|||||+|.+|+++++++.|||+|++|++|||+|+|++++++++++.+.+..|++||++||++|+|++
T Consensus 257 ~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lggg~P~~av~~~~~i~~~~~~~~~~~Tf~gnpla~aaal 336 (456)
T 4atq_A 257 KEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMAKGIAGGLPLSAITGRADLLDAVHPGGLGGTYGGNPVACAAAL 336 (456)
T ss_dssp HHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGTTSSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHH
T ss_pred hhcCCceEecccccccCCccccccccccCCCCchhhhhhcccCcCCceeeEecHHHHhcccccCCCCCCCCChHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcC-----CCceeeeccceEEEEEecCC---------hHHHHHHHHHCCc
Q 012363 357 AVLDKISNPAFLASVSKKGHYFKETLKQKLARN-----PHVKDVRGLGLIIGIEFDVS---------ATPVVDACRDSGL 422 (465)
Q Consensus 357 a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~~~~~~~g~~~~i~~~~~---------~~~~~~~l~~~Gv 422 (465)
++|++++++++.+++++.+++++++|+++..++ +.+..++|.|+|+++++..+ ..++...|+++|+
T Consensus 337 a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~Gv 416 (456)
T 4atq_A 337 AAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACLKEGV 416 (456)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTE
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999998775 56889999999999998311 3568889999999
Q ss_pred eEeecCC-CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012363 423 LVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 423 ~v~~~~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
++.+++. ++++||+||+++|++++++++++|+++|+.
T Consensus 417 l~~~~g~~~~~irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 417 IILTCGTYGNVIRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp ECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 9988764 689999999999999999999999999875
No 2
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=100.00 E-value=4.7e-73 Score=570.55 Aligned_cols=397 Identities=25% Similarity=0.356 Sum_probs=348.1
Q ss_pred ccccccccceeeeccccccCccchhccccccchhhhccCCCCCCcchHHHHHHHHhccccccCCCceEEEeeeccEEEeC
Q 012363 16 PLSQSGNLRRQIKFNGVKRRPMVAAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDA 95 (465)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~ 95 (465)
.+.+.. .+|. .++| .|.++ |++|++++|||++++++. |.++|++++|++|+|+||+
T Consensus 29 ~~~~~~--~~~~-----~~~p----~s~~~-~~~a~~~~pgg~~~~~~~------------~~~~P~~i~~a~G~~l~D~ 84 (454)
T 4ao9_A 29 ALADAY--RRFT-----DANP----ASQRQ-FEAQARYMPGANSRSVLF------------YAPFPLTIARGEGAALWDA 84 (454)
T ss_dssp HHHHHH--HHHH-----HHCH----HHHHH-HHHHTTTSGGGCSSGGGC------------CSSCCCEEEEEETTEEEET
T ss_pred hHHHHH--HHHh-----hcCc----HhHHH-HHHHhhhCCCCCCCCccc------------cCCCCccEEEeecCEEEEC
Confidence 344444 5566 6777 45556 999999999999988863 4578999999999999999
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC-CCeEEecCCHHHHHHHHHHH
Q 012363 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKF 174 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~v~~~~sG~eA~~~al~~ 174 (465)
|||+||||+++++++++||+||+|++|+.+|+++..+. ..++....+++++|++.++ .++|+|+|||+|||+.|+|+
T Consensus 85 dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~~~--~~~~~~~~~lae~l~~~~p~~~~v~f~~SGsEA~e~Aikl 162 (454)
T 4ao9_A 85 DGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGINL--TGHNLLEGRLARLICERFPQIEQLRFTNSGTEANLMALTA 162 (454)
T ss_dssp TCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCSCC--CSEESSHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHH
T ss_pred CCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCCCc--cCCcHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHH
Confidence 99999999999999999999999999999999886542 2344557899999999886 89999999999999999999
Q ss_pred HHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC--CCCeEEEEE
Q 012363 175 ARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ--PGKTAAVFV 252 (465)
Q Consensus 175 a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~--~~~~a~vi~ 252 (465)
++.||+ |++||.|+++|||++....+.++... ...+...+|+||+++++++++ .+++++||+
T Consensus 163 Ar~~tg---------r~~ii~~~~~yHG~t~~~~~~~~~~~-------~~~~~~~~p~nd~~~l~~~l~~~~~~iAavIv 226 (454)
T 4ao9_A 163 ALHFTG---------RRKIVVFSGGYHGGVLGFGARPSPTT-------VPFDFLVLPYNDAQTARAQIERHGPEIAVVLV 226 (454)
T ss_dssp HHHHHT---------CCEEEEETTCBCSTTCBBSSSBCTTS-------CCSEEEEECTTCHHHHHHHHHHTGGGEEEEEE
T ss_pred HHhccc---------CCeEEEEeCCcCCccccccccccCcc-------CCCCcccCCCchHHHHHHHHhhcCCceEEEEe
Confidence 999985 88999999999999987766543221 123456789999999999997 457999999
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHH
Q 012363 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKV 332 (465)
Q Consensus 253 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i 332 (465)
||+++++|+++|+++||++|+++|++||++||+|||+| ||+|.+++++++++.||++|++|++|||+|+|++++++++
T Consensus 227 EPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~t--GR~G~~~a~e~~gv~PDi~t~gK~lggG~Piga~~~~~ei 304 (454)
T 4ao9_A 227 EPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT--SRLAPHGLANKLGIRSDLTTLGKYIGGGMSFGAFGGRADV 304 (454)
T ss_dssp CSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTG--GGGSTTCHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHH
T ss_pred ccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCc--CCCccccchhccCCCCcEEEeccccCCCCcceeeeeHHHH
Confidence 99999999999999999999999999999999999999 5999999999999999999999999999999999999999
Q ss_pred HhhccCC----CCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC
Q 012363 333 ASAINYG----DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV 408 (465)
Q Consensus 333 ~~~~~~~----~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~ 408 (465)
++.+.+. .|++||++||++|+|++++|+.++++++++++++++++|+++|+++..+++.+..+++.|+|+++++..
T Consensus 305 ~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m~gi~f~~ 384 (454)
T 4ao9_A 305 MALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEAAGALAERGEALRARLNALCANEGVAMQFTGIGSLMNAHFVQ 384 (454)
T ss_dssp HGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTEEEEESCC
T ss_pred HHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceEEEEEEec
Confidence 9998753 588999999999999999999999999999999999999999999999999889999999999999821
Q ss_pred ------------C---hHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012363 409 ------------S---ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 409 ------------~---~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
+ ...++..|+++||++.|.+ ++.+++.+|++|||+++++|++++.++.
T Consensus 385 ~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~p~~-----~~~~s~~~T~~dId~~l~al~~~l~~~~ 447 (454)
T 4ao9_A 385 GDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSPRG-----FVVLSLPLTDADIDRYVAAIGSFIGGHG 447 (454)
T ss_dssp SCCCSGGGGTTCCHHHHHHHHHHHHHTTEECCTTC-----EEECCTTCCHHHHHHHHHHHHHHHHHSG
T ss_pred CCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEcCCC-----CEEEeCCCCHHHHHHHHHHHHHHHHhcc
Confidence 1 1357778999999998764 3467888999999999999999998764
No 3
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=100.00 E-value=1.6e-70 Score=556.75 Aligned_cols=394 Identities=26% Similarity=0.449 Sum_probs=341.7
Q ss_pred hHHHHHHHHhccccccCC-------CceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccccc
Q 012363 62 NKEVMEAEKKLLVGTYNR-------APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS 134 (465)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~-------~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~ 134 (465)
.+.+.+++.++.+++|.. .|++|+||+|+||||.|||+||||.++++++++||+||+|.+|+.+|++++.+..
T Consensus 24 ~~~~~~~~~~~~~h~~t~~~~~~~~~P~vi~rg~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~ 103 (473)
T 4e3q_A 24 PQSWEARAETYSLYGFTDMPSLHQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYH 103 (473)
T ss_dssp CCSHHHHHHHHBCCSSCCHHHHHHHCCEEEEEEETTEEEETTCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCC
T ss_pred cccHHHHHhhhcCCCCCChhhhccCCCEEEEeeecCEEEeCCCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhccccc
Confidence 345666777888888764 4899999999999999999999999999999999999999999999999875432
Q ss_pred C--CCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccc
Q 012363 135 N--MYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL 210 (465)
Q Consensus 135 ~--~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~ 210 (465)
. ...+++..+|+++|++..+ .++|+|+|||+|||+.|+|+|+.|+..++.+ ++.+||.++++|||.+.+++++
T Consensus 104 ~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~---~r~~ii~~~~~yHG~t~~a~s~ 180 (473)
T 4e3q_A 104 AFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKP---QKRKILTRWNAYHGVTAVSASM 180 (473)
T ss_dssp CCTTEEEHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCT---TCCEEEEETTCCCCSSHHHHHH
T ss_pred ccccccCHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCC---CcceEEEeeceECCCccccccc
Confidence 2 3356778899999999986 6799999999999999999999987655543 5789999999999999999998
Q ss_pred cCCCCcCCCCCCCCCCceEeeCCC------------------HHHHHhhcC---CCCeEEEEEcccCCCCCcccCCHHHH
Q 012363 211 TSKEHYRSPFEPVMPGVNFVEYGN------------------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFL 269 (465)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~d------------------~~~le~~l~---~~~~a~vi~ep~~~~~G~~~~~~~~l 269 (465)
++.+. ...+.+..+++..+++++ .+++++.+. ++++++||+||+++++|+++|+++||
T Consensus 181 tg~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl 259 (473)
T 4e3q_A 181 TGKPY-NSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYF 259 (473)
T ss_dssp SCCGG-GGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHH
T ss_pred ccccc-ccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHH
Confidence 87653 333444445555554431 234555554 45799999999999999999999999
Q ss_pred HHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhcc-------CCCC
Q 012363 270 QFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAIN-------YGDH 341 (465)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~-------~~~~ 341 (465)
++|+++|++||++||+|||+|||||+|.+|+++++++.||++|++|+++|| +|+|++++++++++.+. +..|
T Consensus 260 ~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~h 339 (473)
T 4e3q_A 260 QAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPH 339 (473)
T ss_dssp HHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHhcccceEEeccCccccCCcccchhHHHhcCCCCChHHhcccccCCCCCcccccccHHHHHHhcccccccccccc
Confidence 999999999999999999999999999999999999999999999999998 99999999999988763 3468
Q ss_pred cCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec--C-----------
Q 012363 342 GSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD--V----------- 408 (465)
Q Consensus 342 ~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~--~----------- 408 (465)
++||++||++|+|++++|+.++++++++++++++++|+++|+++. +++.+..+++.|+|+++++. .
T Consensus 340 g~T~~Gnpla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~-~~~~v~~vRG~Gl~~gielv~~~~~~~~~~~~~~ 418 (473)
T 4e3q_A 340 GFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIA-ERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLS 418 (473)
T ss_dssp CCTTTTCHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHT-TSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGC
T ss_pred CCCCCCCcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHh-cCCCeeEEeecceEEEEEEecCccccccccccHH
Confidence 999999999999999999999999999999999999999999874 56788999999999999982 1
Q ss_pred ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012363 409 SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 409 ~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
....+.+.|+++||++.+.+ +.+||+||+++|++|+|+++++|+++++++.+
T Consensus 419 ~~~~~~~~~~~~Gll~~~~g--~~i~l~PPL~it~~eid~~~~~l~~al~~v~a 470 (473)
T 4e3q_A 419 VSERIANTCTDLGLICRPLG--QSVVLCPPFILTEAQMDEMFDKLEKALDKVFA 470 (473)
T ss_dssp HHHHHHHHHHHTTEECEEET--TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCcEEEecC--CEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 13568899999999999876 78999999999999999999999999988754
No 4
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=100.00 E-value=3.8e-64 Score=515.49 Aligned_cols=393 Identities=25% Similarity=0.456 Sum_probs=344.0
Q ss_pred HHHHHHHhccccccC-------CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-
Q 012363 64 EVMEAEKKLLVGTYN-------RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN- 135 (465)
Q Consensus 64 ~~~~~~~~~~~~~~~-------~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~- 135 (465)
++.+...++.|++|. ..|+++++++|+++||.||++||||+++++++++||+||+|++|+.+++++..+++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~ 92 (476)
T 3i5t_A 13 AVGAAMRDHILLPAQEMAKLGKSAQPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPW 92 (476)
T ss_dssp CHHHHHHHHBCCTTEEGGGTTTCCCCBEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTT
T ss_pred HHHhhcccccccCcccccccccCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcccC
Confidence 344455556666543 258999999999999999999999999999999999999999999999998765444
Q ss_pred CCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012363 136 MYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 136 ~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
.++++...+|+++|++.++ .++|+|+|||+||++.|+++++.+....+.. ++++||+++++|||++..++++++.
T Consensus 93 ~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~---~~~~vi~~~~~yHg~~~~~~~~~~~ 169 (476)
T 3i5t_A 93 YMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRP---QKKRIIVRYDGYHGSTALTAACTGR 169 (476)
T ss_dssp TCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCT---TCCEEEEETTCCCCSSHHHHHTCCC
T ss_pred ccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEcCCcCcCChhhccccCC
Confidence 5778889999999999985 7899999999999999999999874332221 4789999999999999999999888
Q ss_pred CCcCCCCCCCCCCceEeeCCC----------------HHHHHhhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHH
Q 012363 214 EHYRSPFEPVMPGVNFVEYGN----------------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRD 274 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d----------------~~~le~~l~---~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~ 274 (465)
+.++..+.+..+++.+++++. +++|+++++ ++++++||+||+++++|.++++++||++|++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~ 249 (476)
T 3i5t_A 170 TGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKA 249 (476)
T ss_dssp GGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHH
T ss_pred hhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHH
Confidence 877777777777777666332 789999886 2578999999999999999999999999999
Q ss_pred HHHHhCCEEEEeccccCCCCCCcccccc-ccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccCC-------CCcCCC
Q 012363 275 ACDDAGALLVFDEVQCGLGRTGYLWAHE-HYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG-------DHGSTF 345 (465)
Q Consensus 275 l~~~~g~llI~DEv~~g~gr~g~~~~~~-~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~-------~~~~t~ 345 (465)
+|++||++||+||||+||||+|.+++++ ++++.||++||||++++| +|+|++++++++++.+.+. .+++||
T Consensus 250 lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~ 329 (476)
T 3i5t_A 250 ICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTY 329 (476)
T ss_dssp HHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEEECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTT
T ss_pred HHHHcCCEEEEEecccCCccccCceeeecccCCCcchhhhhhhhcCCCcCeEEEEECHHHHHHHhcCCcccccccccCCC
Confidence 9999999999999999999999988888 899999999999999999 9999999999999998753 678999
Q ss_pred CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC-------------hHH
Q 012363 346 AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS-------------ATP 412 (465)
Q Consensus 346 ~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~-------------~~~ 412 (465)
++||++|+|++++|+.++++++.++++++++++++.|+++ ..+|.+..+++.|+|+++++... ...
T Consensus 330 ~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~v~~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~ 408 (476)
T 3i5t_A 330 SNQPVACAAALANIELMEREGIVDQAREMADYFAAALASL-RDLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLK 408 (476)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTT-TTSTTEEEEEEETTEEEEEECCC-----CCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hcCCCeEEEEecCceeEEEEecCccccccccchhHHHHH
Confidence 9999999999999999877889999999999999999854 57788889999999999998422 457
Q ss_pred HHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012363 413 VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 413 ~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
+.+.|+++||++.+.+ +++||+|++++|++++++++++|+++++++.+
T Consensus 409 ~~~~l~~~Gv~v~~~g--~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~~ 456 (476)
T 3i5t_A 409 IDERCFELGLIVRPLG--DLCVISPPLIISRAQIDEMVAIMRQAITEVSA 456 (476)
T ss_dssp HHHHHHHTTEECEEET--TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEEecC--CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999876 79999999999999999999999999987653
No 5
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=100.00 E-value=3.5e-64 Score=514.98 Aligned_cols=394 Identities=27% Similarity=0.465 Sum_probs=342.2
Q ss_pred chHHHHHHHHhccccccCC-------CceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccc-
Q 012363 61 NNKEVMEAEKKLLVGTYNR-------APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH- 132 (465)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~-------~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~- 132 (465)
+.+.+.+...++.+++|.. .|+++++++|+++||.||++||||++++++++|||+||+|++|+.++++++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~ 90 (472)
T 3hmu_A 11 PTAELQALDAAHHLHPFSANNALGEEGTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYY 90 (472)
T ss_dssp CHHHHHHHHHHHEECTTEEHHHHHHHCCEEEEEEEBTEEEETTCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCC
T ss_pred CHHHHHHHHHhhccCCcccccccccCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcccc
Confidence 3455666667777877653 68999999999999999999999999999999999999999999999988652
Q ss_pred -ccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccc
Q 012363 133 -VSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA 209 (465)
Q Consensus 133 -~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~ 209 (465)
....++++...+|+++|++.++ .++|+|+|||+||++.|+++++.++...+.+ ++++||+++++|||++..+++
T Consensus 91 ~~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~---~~~~ii~~~~~yHg~t~~~~~ 167 (472)
T 3hmu_A 91 NTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQP---EKTVIISRKNAYHGSTVASSA 167 (472)
T ss_dssp CSSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCT---TCCEEEEETTCCCCSSHHHHH
T ss_pred ccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEcCcCCCccHHhhh
Confidence 2335677889999999999985 6899999999999999999999987544432 578999999999999999998
Q ss_pred ccCCCCcCCCCCCCCCCceEeeCC------C-----------HHHHHhhcC---CCCeEEEEEcccCCCCCcccCCHHHH
Q 012363 210 LTSKEHYRSPFEPVMPGVNFVEYG------N-----------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFL 269 (465)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~------d-----------~~~le~~l~---~~~~a~vi~ep~~~~~G~~~~~~~~l 269 (465)
+++.+.++..+. ..+++..++.+ | +++|+++++ ++++++||+||+++++|.++++++||
T Consensus 168 ~~~~~~~~~~~~-~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l 246 (472)
T 3hmu_A 168 LGGMAGMHAQSG-LIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYW 246 (472)
T ss_dssp HSCCHHHHHTTC-CCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHH
T ss_pred ccCChhhccccC-CCCCcEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHH
Confidence 887766555555 45566655532 2 788998886 25789999999999999999999999
Q ss_pred HHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccC--CCCcCCCC
Q 012363 270 QFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINY--GDHGSTFA 346 (465)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~--~~~~~t~~ 346 (465)
++|+++|++||++||+||||+||||+|..++++++++.||++||||++++| +|+|++++++++++.+.. ..+++||+
T Consensus 247 ~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~t~~ 326 (472)
T 3hmu_A 247 PEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYS 326 (472)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCCTTT
T ss_pred HHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCceeeechhhhcCCcceEEEEECHHHHHhcccCCccccCCCC
Confidence 999999999999999999999999999988889999999999999999987 899999999999998843 36788999
Q ss_pred ChHHHHHHHHHHHHHhcCchHHHHHH-HHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC--------------hH
Q 012363 347 GSPLVCNAAIAVLDKISNPAFLASVS-KKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS--------------AT 411 (465)
Q Consensus 347 ~~~~~~~aa~a~L~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~--------------~~ 411 (465)
+||++|+|++++|+.++++++.++++ ++++++++.|+++ ..+|.+..+++.|+|+++++..+ ..
T Consensus 327 ~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~ 405 (472)
T 3hmu_A 327 GHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEAL-TDHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGY 405 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGG-GGSTTEEEEEEETTEEEEEECSCGGGTCCBSSCTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hcCCCeEEEEecCceEEEEEecCccccccccchhHHHHH
Confidence 99999999999999887788999999 9999999999664 56888889999999999998321 45
Q ss_pred HHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012363 412 PVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 412 ~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
.+.+.|+++||++.+++ +++||+|++++|++++++++++|+++++++.
T Consensus 406 ~~~~~l~~~Gv~v~~~g--~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~~ 453 (472)
T 3hmu_A 406 ICRERCFANNLIMRHVG--DRMIISPPLVITPAEIDEMFVRIRKSLDEAQ 453 (472)
T ss_dssp HHHHHHHHTTBCCEEET--TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCcEEEecC--CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999886 8999999999999999999999999987653
No 6
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=100.00 E-value=1.6e-63 Score=508.29 Aligned_cols=393 Identities=33% Similarity=0.512 Sum_probs=348.7
Q ss_pred chHHHHHHHHhccccccC-CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCC
Q 012363 61 NNKEVMEAEKKLLVGTYN-RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYY 138 (465)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~-~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~-~~~~ 138 (465)
.+++++++..++...++. +.|+++++++|+++||.||++||||+++++++++||+||+|++|+.+++++..++. ..++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~v~d~~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~ 105 (453)
T 4ffc_A 26 RSGALAERRRAAVSAGVGSTAPVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCFMVTP 105 (453)
T ss_dssp HHHHHHHHHHHHBCTTTCCSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTTTTSC
T ss_pred CHHHHHHHHHHhcCCCcCCCCCceEEeeecCEEEeCCCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhccccccCcCC
Confidence 456677777777766654 68999999999999999999999999999999999999999999999998875543 3567
Q ss_pred CHHHHHHHHHHHhhcC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCC-
Q 012363 139 SIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE- 214 (465)
Q Consensus 139 ~~~~~~la~~l~~~~~---~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~- 214 (465)
++...+|+++|++.++ .++|+|+|||+||++.|+++++.+++ +++||+++++|||++..++++++..
T Consensus 106 ~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~g---------~~~ii~~~~~yhg~~~~~~~~~~~~~ 176 (453)
T 4ffc_A 106 YEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATG---------RPAVVAFDNAYHGRTNLTMALTAKSM 176 (453)
T ss_dssp CHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHC---------CCEEEEETTCCCCSSHHHHHHCCCCT
T ss_pred CHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhcC---------CCEEEEEcCccCCcchHHHhhcCCCc
Confidence 8889999999999986 57999999999999999999998763 7899999999999999998887764
Q ss_pred CcCCCCCCCCCCceEeeCC----C-------------HHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHH
Q 012363 215 HYRSPFEPVMPGVNFVEYG----N-------------IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACD 277 (465)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~----d-------------~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~ 277 (465)
.+...+.+..+++..+|++ | +++|++.+.++++++||+||+++++|+++++++|+++|+++|+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~ 256 (453)
T 4ffc_A 177 PYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWAS 256 (453)
T ss_dssp TTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHH
T ss_pred ccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHH
Confidence 5566666777777777765 4 4667777766689999999999999999999999999999999
Q ss_pred HhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHH
Q 012363 278 DAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIA 357 (465)
Q Consensus 278 ~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a 357 (465)
+||++||+||||+|||++|..++++++++.||++||||++++|+|+||+++++++++.+.+..+.+||++||++++|+++
T Consensus 257 ~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~sK~~~~G~~~G~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~a 336 (453)
T 4ffc_A 257 ENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMAKGIAGGMPLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAAVA 336 (453)
T ss_dssp HHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTSSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHH
T ss_pred HcCCEEEEecCccCCCcccccchhhhcCCCcchHhhhhhhcCCcCeEEEEECHHHHhhhcccCcCCCCCcCHHHHHHHHH
Confidence 99999999999999999999888899999999999999999999999999999999999887889999999999999999
Q ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC---------ChHHHHHHHHHCCceEeecC
Q 012363 358 VLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV---------SATPVVDACRDSGLLVLTAG 428 (465)
Q Consensus 358 ~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~---------~~~~~~~~l~~~Gv~v~~~~ 428 (465)
+|+.++++++.++++++++++++.|++++..++.+..+++.|+|+++++.. ...++.+.|+++||++.+++
T Consensus 337 al~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~ 416 (453)
T 4ffc_A 337 ALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCG 416 (453)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEEC
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCC
Confidence 999887788999999999999999999988899888899999999998831 24578899999999999876
Q ss_pred C-CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012363 429 K-GNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 429 ~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
. ++++||+|++.+|++++++++++|+++++++.+
T Consensus 417 ~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 451 (453)
T 4ffc_A 417 TFGNVIRLLPPLVIGDDLLDEGITALSDIIRAKAS 451 (453)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4 578999999999999999999999999987653
No 7
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=100.00 E-value=6.7e-63 Score=503.56 Aligned_cols=390 Identities=31% Similarity=0.512 Sum_probs=343.8
Q ss_pred chHHHHHHHHhccccccC-CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCC
Q 012363 61 NNKEVMEAEKKLLVGTYN-RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYY 138 (465)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~-~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~-~~~~ 138 (465)
.+++++++..++..+++. +.|+++++|+|+++||.||++||||+++++++++||+||+|++|+.+++++..++. ..++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~ 102 (451)
T 3oks_A 23 RSQALIDRKGTAVARGVGTTMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTP 102 (451)
T ss_dssp HHHHHHHHHHHHBCTTBCCSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCSCCTTTTSC
T ss_pred cHHHHHHHHHhhccCCcCCCCCceEEEeecCEEEECCCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhcccccCCccC
Confidence 456677777777766665 68999999999999999999999999999999999999999999999998865543 3467
Q ss_pred CHHHHHHHHHHHhhcC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCC-
Q 012363 139 SIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE- 214 (465)
Q Consensus 139 ~~~~~~la~~l~~~~~---~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~- 214 (465)
++...+|+++|++.++ .++|+|++||+||++.|+++++.+++ +++||+++++|||++..++++++..
T Consensus 103 ~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~g---------~~~ii~~~~~yhG~~~~~~~~~~~~~ 173 (451)
T 3oks_A 103 YEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTH---------KPAVVAFDHAYHGRTNLTMALTAKVM 173 (451)
T ss_dssp CHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHHC---------CCEEEEETTCCCCSSHHHHHHCCCCT
T ss_pred CHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhcC---------CCeEEEEcCCcCCccHHHHHhcCCCc
Confidence 7889999999999985 57999999999999999999998774 7899999999999999999887764
Q ss_pred CcCCCCCCCCCCceEeeCC------------------CHHHHHhhc----CCCCeEEEEEcccCCCCCcccCCHHHHHHH
Q 012363 215 HYRSPFEPVMPGVNFVEYG------------------NIEATRKLI----QPGKTAAVFVEPIQGEGGIYSATKEFLQFL 272 (465)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~------------------d~~~le~~l----~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l 272 (465)
.+...+.+..+++.++|++ +++.+++.+ .++++++||+||+++++|+++++++|+++|
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l 253 (451)
T 3oks_A 174 PYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTL 253 (451)
T ss_dssp TTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHH
T ss_pred ccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHH
Confidence 5666666777788777765 133333333 346799999999999999999999999999
Q ss_pred HHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHH
Q 012363 273 RDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVC 352 (465)
Q Consensus 273 ~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~ 352 (465)
+++|++||++||+||||+|||++|..++++++++.||++||||++++|+|+|++++++++++.+.+..+.+||++||+++
T Consensus 254 ~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G~~iG~v~~~~~~~~~~~~~~~~~t~~~~~~~~ 333 (451)
T 3oks_A 254 LDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAKGIAGGLPLSAVTGRAEIMDSPHVSGLGGTYGGNPIAC 333 (451)
T ss_dssp HHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCEEEEEEHHHHTCSCTTSBCCSSSSCHHHH
T ss_pred HHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCCeeeehhhhhCCcceEEEEECHHHHhhhcCCCcCCCCCCCHHHH
Confidence 99999999999999999999999998889999999999999999999999999999999999998878899999999999
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC---------ChHHHHHHHHHCCce
Q 012363 353 NAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV---------SATPVVDACRDSGLL 423 (465)
Q Consensus 353 ~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~---------~~~~~~~~l~~~Gv~ 423 (465)
+|+.++|+.++++++.++++++++++++.|++++..++.+..+++.|+|+++++.. ...++.+.|+++||+
T Consensus 334 aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 413 (451)
T 3oks_A 334 AAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVI 413 (451)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEeeEEEEEEEecCccCCCCHHHHHHHHHHHHhCCcE
Confidence 99999999887778999999999999999999988899888999999999998831 245688999999999
Q ss_pred EeecCC-CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012363 424 VLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 424 v~~~~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
+.+++. ++++||+|++.+|++++++++++|++++++
T Consensus 414 v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 414 VLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp CEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred EecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 998764 578999999999999999999999998864
No 8
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=100.00 E-value=1.5e-62 Score=502.38 Aligned_cols=395 Identities=25% Similarity=0.423 Sum_probs=343.6
Q ss_pred HHHHHHhccccccC---------CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccc--c
Q 012363 65 VMEAEKKLLVGTYN---------RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH--V 133 (465)
Q Consensus 65 ~~~~~~~~~~~~~~---------~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~--~ 133 (465)
+.+...++.+++|. +.|+++++++|+++||.||++||||+++++++++||+||+|++|+.+++++..+ .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~ 88 (460)
T 3gju_A 9 LNAWDRDHFFHPSTHMGTHARGESPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHA 88 (460)
T ss_dssp HHHHHHHHCCCTTSCHHHHHHTCSCCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHhhhcccccCccccccccccCCCceEEEEeeccEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcccccc
Confidence 44444555666553 346999999999999999999999999999999999999999999999988653 2
Q ss_pred cCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccccc
Q 012363 134 SNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT 211 (465)
Q Consensus 134 ~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~ 211 (465)
...++++...+|+++|++.++ .++|+|++||+||++.|+++++.++..++.+ ++++||+++++|||++..+++++
T Consensus 89 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~---~~~~vi~~~~~yhg~~~~~~~~~ 165 (460)
T 3gju_A 89 YVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRP---EKKKIISRWRGYHGSGVMTGSLT 165 (460)
T ss_dssp CTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCT---TCCEEEEETTCCCCSSHHHHHHC
T ss_pred ccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCC---CCCEEEEECCCcCCCCHHHhhcc
Confidence 335667889999999999874 7899999999999999999999886544332 57899999999999999999988
Q ss_pred CCCCcCCCCCCCCCCceEeeC------CC------------HHHHHhhcC---CCCeEEEEEcccCCCCCcccCCHHHHH
Q 012363 212 SKEHYRSPFEPVMPGVNFVEY------GN------------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQ 270 (465)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~------~d------------~~~le~~l~---~~~~a~vi~ep~~~~~G~~~~~~~~l~ 270 (465)
+...++..+.+...++..+|. +| +++|+++++ ++++++|++||+++++|.+++++++++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~ 245 (460)
T 3gju_A 166 GLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWE 245 (460)
T ss_dssp CCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHH
T ss_pred CCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHH
Confidence 877777667776677766652 23 688999886 257899999999999999999999999
Q ss_pred HHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhcc-------CCCCc
Q 012363 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAIN-------YGDHG 342 (465)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~-------~~~~~ 342 (465)
+|+++|++||++||+||||+||||+|..++.+++++.||++||||++++| +|+|++++++++++.+. ...++
T Consensus 246 ~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~ 325 (460)
T 3gju_A 246 KIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHG 325 (460)
T ss_dssp HHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCC
T ss_pred HHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeeeeehhhcCCCCCeEEEEECHHHHHHHhcccccccccccC
Confidence 99999999999999999999999999888888999999999999999988 79999999999999883 44678
Q ss_pred CCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC-------------
Q 012363 343 STFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS------------- 409 (465)
Q Consensus 343 ~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~------------- 409 (465)
.||++||++++|++++|+.++++++.++++++.+++++.|.+.+.+++.+..+++.|+|+++++..+
T Consensus 326 ~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (460)
T 3gju_A 326 WTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFVADKDDRVFFDASQKI 405 (460)
T ss_dssp CTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeEEEEEEEccCccccccccchHHH
Confidence 9999999999999999998877889999999999999999988888888889999999999988311
Q ss_pred hHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012363 410 ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 410 ~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
..++.+.|+++||++.+.+.++++||+|++++|++++++++++|+++++++.+
T Consensus 406 ~~~~~~~l~~~Gv~v~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 458 (460)
T 3gju_A 406 GPQVATALAASGVIGRAMPQGDILGFAPPLCLTREQADIVVSKTADAVKSVFA 458 (460)
T ss_dssp HHHHHHHHHHTTEECEECSSSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCeEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 45788999999999998764489999999999999999999999999988764
No 9
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=100.00 E-value=1.7e-62 Score=500.70 Aligned_cols=397 Identities=31% Similarity=0.461 Sum_probs=340.9
Q ss_pred chHHHHHHHHhccccccCCC------ceEEEeeeccEEEeC-CCC--EEEecccCcccccCCCCCHHHHHHHHHHHhhcc
Q 012363 61 NNKEVMEAEKKLLVGTYNRA------PVVLASGKGCKLYDA-EGR--EYLDLSSGIAVNALGHGDADWIKAVVDQANVLT 131 (465)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~------p~~~~~~~G~~~~d~-dG~--~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~ 131 (465)
..+++++.+.++.+++|.+. |+++++++|+++||. ||+ +||||+++++++++||+||+|++|+.+++++..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~d~~dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~ 108 (457)
T 3tfu_A 29 TPEQIIAVDGAHLWHPYSSIGREAVSPVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMN 108 (457)
T ss_dssp CHHHHHHHHHHHBCCTTCCSSCCSSCCEEEEEEEBTEEEEEETTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHhhcCcccccccccCCCCceEEeeecCEEEEccCCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHhcc
Confidence 35677788888999998875 899999999999999 999 999999999999999999999999999998876
Q ss_pred ccc-CCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccc
Q 012363 132 HVS-NMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL 208 (465)
Q Consensus 132 ~~~-~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~ 208 (465)
+.+ ..++++...+|+++|++.++ .++|+|++||+||++.|+++++.+....+.+ ++++||+++++|||++..++
T Consensus 109 ~~~~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~---g~~~ii~~~~~yhg~~~~~~ 185 (457)
T 3tfu_A 109 HVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLP---GKRRLMTWRGGYHGDTFLAM 185 (457)
T ss_dssp CCCSSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCT---TCCEEEEETTCCCCSSHHHH
T ss_pred CccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCC---CCceEEEEcCCcCCccHHhh
Confidence 544 45677889999999999985 7899999999999999999999874332211 46799999999999999988
Q ss_pred cccC-CCCcCCCCCCCCCCceEeeC-------CCHHHHHhhcC--CCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHH
Q 012363 209 ALTS-KEHYRSPFEPVMPGVNFVEY-------GNIEATRKLIQ--PGKTAAVFVEP-IQGEGGIYSATKEFLQFLRDACD 277 (465)
Q Consensus 209 ~~~~-~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~--~~~~a~vi~ep-~~~~~G~~~~~~~~l~~l~~l~~ 277 (465)
++++ ...+...+.+..+++.++|. +|+++|+++++ ++++++|++|| +++++|+++++++++++|+++|+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~ 265 (457)
T 3tfu_A 186 SICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICR 265 (457)
T ss_dssp TTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHH
T ss_pred cccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHH
Confidence 8753 44455555666667766665 47899999997 25799999999 99999999999999999999999
Q ss_pred HhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhcc---CC--CCcCCCCChHHH
Q 012363 278 DAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAIN---YG--DHGSTFAGSPLV 351 (465)
Q Consensus 278 ~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~---~~--~~~~t~~~~~~~ 351 (465)
+||++||+||||+||||+|.+++++++++.||++||||+++|| +|+|++++++++++.+. .. .+++||++||++
T Consensus 266 ~~gillI~DEv~~g~gr~G~~~a~~~~~~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a 345 (457)
T 3tfu_A 266 RYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLA 345 (457)
T ss_dssp HHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHH
T ss_pred HcCCEEEEEcCccCCccccchhHhHhcCCCceEEEEChhhhCCCcceEEEEEcHHHHHHhhccCCCceeEecCCCcCHHH
Confidence 9999999999999999999988889999999999999999998 69999999999999884 33 678999999999
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec--CChHHHHHHHHHCCceEeecCC
Q 012363 352 CNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGK 429 (465)
Q Consensus 352 ~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~~ 429 (465)
|+|++++|+.++++++.++++++++++++.|+++. .++.+..+++.|+|+++++. .+..++.+.|+++||++.+.+
T Consensus 346 ~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~v~~vr~~G~~~~i~l~~~~~~~~~~~~l~~~Gv~v~~~~- 423 (457)
T 3tfu_A 346 CAVSVASVELLLGQDWRTRITELAAGLTAGLDTAR-ALPAVTDVRVCGAIGVIECDRPVDLAVATPAALDRGVWLRPFR- 423 (457)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGG-GSTTEEEEEECSSCEEEEESSCCCHHHHHHHHHHTTEECCCBT-
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-cCCCeeeeecCCeEEEEEECCcccHHHHHHHHHHCCeEEEecC-
Confidence 99999999998778899999999999999998764 67778889999999999984 346789999999999998865
Q ss_pred CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhhc
Q 012363 430 GNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 430 ~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
+++||+|++.+|++|+++++++|+++++++..+
T Consensus 424 -~~lRi~p~~~~t~eei~~~l~~L~~~l~~~~~~ 456 (457)
T 3tfu_A 424 -NLVYAMPPYICTPAEITQITSAMVEVARLVGSL 456 (457)
T ss_dssp -TEEEECCCTTCCHHHHHHHHHHHHHHHHHC---
T ss_pred -CEEEEECCCCCCHHHHHHHHHHHHHHHHHhccC
Confidence 789999999999999999999999999876543
No 10
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=100.00 E-value=2.8e-62 Score=500.32 Aligned_cols=377 Identities=28% Similarity=0.490 Sum_probs=330.6
Q ss_pred CceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccc--ccCCCCCHHHHHHHHHHHhhcC--C
Q 012363 80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH--VSNMYYSIPQIELAKRLVACSF--A 155 (465)
Q Consensus 80 ~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~la~~l~~~~~--~ 155 (465)
.|+++++|+|+++||.||++||||++++++++|||+||+|++|+.+++++..+ ....++++...+|+++|++.++ .
T Consensus 32 ~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~ 111 (459)
T 4a6r_A 32 GARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTPAGF 111 (459)
T ss_dssp --CCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTTSSSCCHHHHHHHHHHHHHSCTTC
T ss_pred CCeeEEEeecCEEEECCCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCC
Confidence 58999999999999999999999999999999999999999999999988652 2335678889999999999985 7
Q ss_pred CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC--
Q 012363 156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-- 233 (465)
Q Consensus 156 ~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 233 (465)
++|+|++||+||++.|+++++.++...+.+ ++++||+++|+|||++..++++++.+.++..+.+..+++.+++.+
T Consensus 112 ~~v~~~~ggseA~~~al~~~~~~~~~~g~~---~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 188 (459)
T 4a6r_A 112 DRVFYTNSGSESVDTMIRMVRRYWDVQGKP---EKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWW 188 (459)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHTTCT---TCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCH
T ss_pred CEEEEeCchHHHHHHHHHHHHHHHHhcCCC---CCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCcc
Confidence 899999999999999999999886544432 588999999999999999999888777766666666677666632
Q ss_pred -------C--------HHHHHhhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCC
Q 012363 234 -------N--------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT 295 (465)
Q Consensus 234 -------d--------~~~le~~l~---~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~ 295 (465)
| +++|+++++ ++++++|++||+++++|.++++++++++|+++|++||++||+||||+||||+
T Consensus 189 ~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~ 268 (459)
T 4a6r_A 189 YKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRT 268 (459)
T ss_dssp HHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT
T ss_pred ccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcc
Confidence 2 788999886 2578999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhcc---CCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHH
Q 012363 296 GYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAIN---YGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASV 371 (465)
Q Consensus 296 g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~---~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~ 371 (465)
|..++.+++++.||++||||++++| +|+|++++++++++.+. ...+++||++||++++|++++|+.++++++.+++
T Consensus 269 G~~~~~~~~~~~pdi~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~ 348 (459)
T 4a6r_A 269 GEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRV 348 (459)
T ss_dssp SSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred cccchHhhcCCCCCeeehhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHH
Confidence 9888888999999999999999987 89999999999999886 5567789999999999999999988778899999
Q ss_pred H-HHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC-------------hHHHHHHHHHCCceEeecCCCCEEEEec
Q 012363 372 S-KKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS-------------ATPVVDACRDSGLLVLTAGKGNVVRLVP 437 (465)
Q Consensus 372 ~-~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~-------------~~~~~~~l~~~Gv~v~~~~~~~~lRi~~ 437 (465)
+ ++++++++.|.+.+..++.+..+++.|+|+++++..+ ..++.+.|+++||++.+++ +++||+|
T Consensus 349 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g--~~iRi~~ 426 (459)
T 4a6r_A 349 KDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACG--DHIVSAP 426 (459)
T ss_dssp HHTHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEET--TEEEECC
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecCC--CEEEEEC
Confidence 9 9999999999666677888889999999999988321 5678899999999999976 7999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhh
Q 012363 438 PLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 438 ~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
++++|++++++++++|+++++++.
T Consensus 427 ~~~~t~e~i~~~l~~l~~~l~~~~ 450 (459)
T 4a6r_A 427 PLVMTRAEVDEMLAVAERCLEEFE 450 (459)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998764
No 11
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=100.00 E-value=2.1e-61 Score=492.38 Aligned_cols=393 Identities=30% Similarity=0.492 Sum_probs=319.2
Q ss_pred HHHHHHhccccccC------CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccc-cCCC
Q 012363 65 VMEAEKKLLVGTYN------RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV-SNMY 137 (465)
Q Consensus 65 ~~~~~~~~~~~~~~------~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~-~~~~ 137 (465)
+.+...++.++++. ..|+++++|+|+++||.||++||||+++++++++||+||+|++|+.+++++..++ ...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~ 84 (448)
T 3dod_A 5 LIEKSKKHLWLPFTQMKDYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLLGM 84 (448)
T ss_dssp HHHHHHHHBCCTTCCHHHHHHSCCEEEEEEBTEEEETTSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCCCSSS
T ss_pred HHHhhhhcccccccccccccCCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCcccccc
Confidence 44455566666553 3689999999999999999999999999999999999999999999999886543 3456
Q ss_pred CCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCC
Q 012363 138 YSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH 215 (465)
Q Consensus 138 ~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~ 215 (465)
+++...+++++|++.++ .++|+|++||+||++.|+++++.+....+. +.+++||+++++|||++..++++++.+.
T Consensus 85 ~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~---~~~~~vi~~~~~yhg~~~~~~~~~~~~~ 161 (448)
T 3dod_A 85 TNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGK---PEKQKFIAMKNGYHGDTIGAVSVGSIEL 161 (448)
T ss_dssp EEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTC---TTCCEEEEEC------------------
T ss_pred CCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCC---CCCCEEEEECCCCCCccHHHHHhcCCcc
Confidence 67778999999999985 689999999999999999999987221111 1278999999999999999988887776
Q ss_pred cCCCCCCCCCCceEeeCCC----------------HHHHHhhcC--CCCeEEEEEcccC-CCCCcccCCHHHHHHHHHHH
Q 012363 216 YRSPFEPVMPGVNFVEYGN----------------IEATRKLIQ--PGKTAAVFVEPIQ-GEGGIYSATKEFLQFLRDAC 276 (465)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~d----------------~~~le~~l~--~~~~a~vi~ep~~-~~~G~~~~~~~~l~~l~~l~ 276 (465)
+...+.+..+++..+|+++ +++|+++++ ++++++|++||++ +++|.++++++++++|+++|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~ 241 (448)
T 3dod_A 162 FHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELC 241 (448)
T ss_dssp -----------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHH
T ss_pred ccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHH
Confidence 6666666666677776654 899999997 4578999999998 99999999999999999999
Q ss_pred HHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccC-------CCCcCCCCCh
Q 012363 277 DDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINY-------GDHGSTFAGS 348 (465)
Q Consensus 277 ~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~-------~~~~~t~~~~ 348 (465)
++||++||+||||+|||++|..++.+++++.||++||||++++| +|+|++++++++++.+.. ..+++||++|
T Consensus 242 ~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 321 (448)
T 3dod_A 242 TTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGN 321 (448)
T ss_dssp HHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTTC
T ss_pred HHhCCEEEEeccccCCCcccchhhhhhcCCCCCEEEecccccCCcCceEEEEECHHHHHHhhhccccCCcccccCCCCcC
Confidence 99999999999999999999988889999999999999999999 599999999999999876 5678999999
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC-------------hHHHHH
Q 012363 349 PLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS-------------ATPVVD 415 (465)
Q Consensus 349 ~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~-------------~~~~~~ 415 (465)
|++++|+.++|+.++++++.++++++++++++.|.+ +..++.+..+++.|+++++++..+ ..++++
T Consensus 322 ~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (448)
T 3dod_A 322 QLGCAVALENLALFESENIVEQVAEKSKKLHFLLQD-LHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSL 400 (448)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-HTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-HhcCCCeEEEEeeeEEEEEEEccCcccccccchhhHHHHHHHH
Confidence 999999999999887788999999999999999999 778888888999999999998321 367899
Q ss_pred HHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhhc
Q 012363 416 ACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 416 ~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
.|+++||++.|++ +++||+|++.+|++++++++++|+++++++...
T Consensus 401 ~l~~~Gv~~~~~~--~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 446 (448)
T 3dod_A 401 KMRELGMLTRPLG--DVIAFLPPLASTAEELSEMVAIMKQAIHEVTSL 446 (448)
T ss_dssp HHHHTTEECCEET--TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHCCcEEeccC--CEEEEECCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999875 789999999999999999999999999887654
No 12
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=100.00 E-value=8e-61 Score=485.71 Aligned_cols=399 Identities=34% Similarity=0.569 Sum_probs=327.9
Q ss_pred chHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCH
Q 012363 61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140 (465)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~ 140 (465)
.++++.+...++....|.+.|+++++++|+++||.||++||||.++++++++||+||+|++|+.+++++..+.+..++.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~~~~~~~~~ 107 (433)
T 1z7d_A 28 TPEDYINNELKYGAHNYDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSV 107 (433)
T ss_dssp CHHHHHHHHHHHBCCCCCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEEH
T ss_pred cHHHHHHHHHHhcccccCCCCceEEeeecCEEEECCCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCCccCCcCCH
Confidence 45567776667777778888999999999999999999999999999889999999999999999998765443445667
Q ss_pred HHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhc-CCCCCCCCceEEEEcCCcccCccccccccCCCCcCCC
Q 012363 141 PQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHS-NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP 219 (465)
Q Consensus 141 ~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~-~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 219 (465)
...+++++|+++++.++|+|++||+||++.|+++++.++... +.. +++++||+++++|||++..++.+++.+.+...
T Consensus 108 ~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~--~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~ 185 (433)
T 1z7d_A 108 PLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIP--ENMAKIVVCKNNFSGRTLGCISASTTKKCTSN 185 (433)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCC--TTCCEEEEETTC--------------------
T ss_pred HHHHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCC--CCCCeEEEEeCCcCCcchhhhcccCCcccccc
Confidence 789999999999999999999999999999999988653110 000 12489999999999999887777665444444
Q ss_pred CCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc
Q 012363 220 FEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299 (465)
Q Consensus 220 ~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~ 299 (465)
+.|...++..+|++|+++|+++++.+++++|++||+++++|.++++++++++|+++|++||++||+||+|+|||++|.++
T Consensus 186 ~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~ 265 (433)
T 1z7d_A 186 FGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLL 265 (433)
T ss_dssp ------CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS
T ss_pred CCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcch
Confidence 55666778888999999999999545789999999999999888899999999999999999999999999999999888
Q ss_pred cccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 012363 300 AHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYF 378 (465)
Q Consensus 300 ~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l 378 (465)
+++.+++.||++||||++++| +|+|++++++++++.+.+..+..||++||++++++.++|+.++++++.++++++++++
T Consensus 266 ~~~~~~~~~di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l 345 (433)
T 1z7d_A 266 CVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPF 345 (433)
T ss_dssp GGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred hhHhcCCCCCEEEECccccCCCCCeEEEEECHHHHhhhccccccccCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 888889999999999999999 9999999999999998877788999999999999999999887678999999999999
Q ss_pred HHHHHHHHHcCCCceeeeccceEEEEEecC---ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHH
Q 012363 379 KETLKQKLARNPHVKDVRGLGLIIGIEFDV---SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 379 ~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~---~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~ 455 (465)
++.|+++...++.+..+++.|+++++++.. +..++.+.|+++||++.+++. +++|++|++.+|++|+++++++|++
T Consensus 346 ~~~L~~l~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~iRi~~~~~~t~e~i~~~l~~l~~ 424 (433)
T 1z7d_A 346 LENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLKENGLITRDVHD-KTIRLTPPLCITKEQLDECTEIIVK 424 (433)
T ss_dssp HHHHHHHHTTCTTEEEEEEETTEEEEEECTTTCCHHHHHHHHHHTTEECCEETT-TEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEeeeeEEEEEEccChhHHHHHHHHHHHCCeEEecCCC-CEEEEECCcCCCHHHHHHHHHHHHH
Confidence 999998766777777788999999999843 367899999999999998754 7899999999999999999999999
Q ss_pred HHHHhhh
Q 012363 456 TLPVLDS 462 (465)
Q Consensus 456 ~l~~~~~ 462 (465)
+++++.+
T Consensus 425 ~l~~~~~ 431 (433)
T 1z7d_A 425 TVKFFDE 431 (433)
T ss_dssp HHHHHC-
T ss_pred HHHHHHh
Confidence 9987643
No 13
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=1.4e-60 Score=484.35 Aligned_cols=400 Identities=23% Similarity=0.341 Sum_probs=342.2
Q ss_pred hhccccccchhhhccCCCCCCcchHHHHHHHHhccccccC-CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCH
Q 012363 39 AAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYN-RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDA 117 (465)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p 117 (465)
...|.++ ++++.+++|+|++++.|.+. .+. +.|+++++++|+++||.||++||||++++++++|||+||
T Consensus 5 ~~~s~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p 74 (434)
T 3l44_A 5 FTKSEAL-HKEALEHIVGGVNSPSRSFK---------AVGGGAPIAMERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHP 74 (434)
T ss_dssp CHHHHHH-HHHHHHHBGGGCSSGGGSSG---------GGTCSCCCCEEEEEBTEEEETTCCEEEECCGGGTTCSSCBTCH
T ss_pred ChhHHHH-HHHHHhhCCCCcCccccccc---------cccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCH
Confidence 3567777 99999999999987776542 122 579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEE
Q 012363 118 DWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196 (465)
Q Consensus 118 ~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~ 196 (465)
+|++|+.+++.+... ..++++...+|+++|++.++ .++|+|++||+||++.|+++++.++ ++++||++
T Consensus 75 ~v~~a~~~~~~~~~~--~~~~~~~~~~l~~~la~~~~~~~~v~~~~sGsea~~~ai~~a~~~~---------~~~~vi~~ 143 (434)
T 3l44_A 75 HITKAITTAAENGVL--YGTPTALEVKFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARAYT---------GRTKIMKF 143 (434)
T ss_dssp HHHHHHHHHHHHCSC--CSSCCHHHHHHHHHHHHHCTTCSEEEEESSHHHHHHHHHHHHHHHH---------CCCEEEEE
T ss_pred HHHHHHHHHHHhCcC--CCCCCHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHHhh---------CCCEEEEE
Confidence 999999999987432 45678889999999999984 8999999999999999999998876 47899999
Q ss_pred cCCcccCccccccccCCCCcCCCC--CCC-----CCCceEeeCCCHHHHHhhcC--CCCeEEEEEcccCCCCCcccCCHH
Q 012363 197 TNSFHGRTMGALALTSKEHYRSPF--EPV-----MPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKE 267 (465)
Q Consensus 197 ~~~yhg~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~d~~~le~~l~--~~~~a~vi~ep~~~~~G~~~~~~~ 267 (465)
+++|||++..++..++........ .+. ..++..+|++|+++|+++++ ++++++|++||+++++|.++++++
T Consensus 144 ~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~ 223 (434)
T 3l44_A 144 AGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPG 223 (434)
T ss_dssp TTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTT
T ss_pred cCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHH
Confidence 999999998888766543221110 111 12566788999999999997 257899999999999999999999
Q ss_pred HHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccC---CCCcCC
Q 012363 268 FLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY---GDHGST 344 (465)
Q Consensus 268 ~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~---~~~~~t 344 (465)
++++|+++|++||++||+||||+|| ++|..++.+++++.||++||||++++|+|+|++++++++++.+.+ ..+++|
T Consensus 224 ~l~~l~~l~~~~~illI~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t 302 (434)
T 3l44_A 224 FLEKVNELVHEAGALVIYDEVITAF-RFMYGGAQDLLGVTPDLTALGKVIGGGLPIGAYGGKKEIMEQVAPLGPAYQAGT 302 (434)
T ss_dssp HHHHHHHHHHTTTCEEEEECTTTTT-TSSSSCHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCT
T ss_pred HHHHHHHHHHHcCCEEEEeccccce-eccccHHHHHcCCCCCeeehhhhhcCCcCeeeEEEcHHHHHhhccCCCcccCCC
Confidence 9999999999999999999999999 999888888999999999999999999999999999999998875 347789
Q ss_pred CCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC---------------
Q 012363 345 FAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS--------------- 409 (465)
Q Consensus 345 ~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~--------------- 409 (465)
|++|+++++|+.++|+.++++++.++++++++++++.|+++...++.+..+++.|+++++++...
T Consensus 303 ~~~~~~a~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (434)
T 3l44_A 303 MAGNPASMASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEM 382 (434)
T ss_dssp TTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHH
T ss_pred CCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHH
Confidence 99999999999999999877889999999999999999998888887778899999999988211
Q ss_pred hHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhhc
Q 012363 410 ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 410 ~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
..++.+.|+++||++.+++. +.+|+ ++.+|++++++++++|++++++++++
T Consensus 383 ~~~~~~~l~~~Gv~v~~~~~-~~~rl--~~~~t~e~i~~~l~~l~~~l~~~~~~ 433 (434)
T 3l44_A 383 FGKFFKLMLQEGVNLAPSKY-EAWFL--TTEHTKEDIEYTIEAVGRAFAALADN 433 (434)
T ss_dssp HHHHHHHHHHTTEECCSSTT-CCEEC--CTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCeEEeecCC-CcEEE--ecccCHHHHHHHHHHHHHHHHHHHhc
Confidence 25688899999999998765 55666 67999999999999999999887654
No 14
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=100.00 E-value=3.1e-60 Score=482.08 Aligned_cols=394 Identities=33% Similarity=0.526 Sum_probs=340.8
Q ss_pred chHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCH
Q 012363 61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140 (465)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~ 140 (465)
..+++++.+.++..+.|.+.|+++++++|+++||.||++||||.+++++.++||+||+|++|+.+++++..+.+..++++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~d~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~~~~~~~~ 118 (439)
T 2oat_A 39 TSDDIFEREYKYGAHNYHPLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNN 118 (439)
T ss_dssp CHHHHHHHHHHHBCCCCCCCSCEEEEEEBTEEEETTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEES
T ss_pred CHHHHHHHHHHhcccccCCCCeeEEeeecCEEEECCCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCcccCccCCH
Confidence 45667777777788888888999999999999999999999999999999999999999999999998765443345556
Q ss_pred HHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhc-CCCCCCCCceEEEEcCCcccCccccccccCCCCcCCC
Q 012363 141 PQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHS-NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP 219 (465)
Q Consensus 141 ~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~-~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 219 (465)
...+++++|+++++.++|+|++||+||++.|+++++.++... +.. +++++||+++++|||++..++.+++.+.+...
T Consensus 119 ~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~--~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~ 196 (439)
T 2oat_A 119 VLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQ--KYKAKIVFAAGNFWGRTLSAISSSTDPTSYDG 196 (439)
T ss_dssp SHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCC--TTCCEEEEETTCCCCSSHHHHTTCCCHHHHTT
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHhhhccCCC--CCCCeEEEEcCCCCCCCHhHhhcCCChhcccC
Confidence 688999999999899999999999999999999998653110 000 12489999999999999887777664444444
Q ss_pred CCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc
Q 012363 220 FEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299 (465)
Q Consensus 220 ~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~ 299 (465)
+.|...++..+|++|+++|+++++.+++++|++||+++++|.++++++++++|+++|++||++||+||+|+|||++|..+
T Consensus 197 ~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~ 276 (439)
T 2oat_A 197 FGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWL 276 (439)
T ss_dssp SCSCCTTEEEECSSCHHHHHHHTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS
T ss_pred CCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcch
Confidence 55666788889999999999999645789999999999999888999999999999999999999999999999999888
Q ss_pred cccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 012363 300 AHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYF 378 (465)
Q Consensus 300 ~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l 378 (465)
+++.+++.||++|+||++++| +|+|++++++++++.+.+..++.||++||++++++.++|+.++++++.++++++++++
T Consensus 277 ~~~~~~~~~Di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l 356 (439)
T 2oat_A 277 AVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIIL 356 (439)
T ss_dssp GGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred hHHHhCCCCcEEEecccccCCCCCeEEEEECHHHHhccCCCCcccCCCcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 888899999999999999999 9999999999999999877788999999999999999999887678899999999999
Q ss_pred HHHHHHHHHcCCCceeeeccceEEEEEecC----ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHH
Q 012363 379 KETLKQKLARNPHVKDVRGLGLIIGIEFDV----SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILC 454 (465)
Q Consensus 379 ~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~----~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~ 454 (465)
++.|+++ .++.+..+++.|+++++++.. ...++.+.|+++||++.+.+. +++||+|++.+|++++++++++|+
T Consensus 357 ~~~L~~l--~~~~~~~~~~~g~~~~v~l~~~~~~~~~~l~~~l~~~Gv~v~~~~~-~~iRi~~~~~~t~e~i~~~l~~l~ 433 (439)
T 2oat_A 357 RNELMKL--PSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHG-DIIRFAPPLVIKEDELRESIEIIN 433 (439)
T ss_dssp HHHHTTS--CTTTEEEEEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECCBSSS-SEEEECCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHh--cCCCcEEEEeeeeEEEEEEecCccHHHHHHHHHHHHCCeEEecCCC-CEEEEECccCCCHHHHHHHHHHHH
Confidence 9988775 456666678899999999843 367899999999999998654 899999999999999999999999
Q ss_pred HHHHH
Q 012363 455 KTLPV 459 (465)
Q Consensus 455 ~~l~~ 459 (465)
+++++
T Consensus 434 ~~l~~ 438 (439)
T 2oat_A 434 KTILS 438 (439)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 98864
No 15
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=100.00 E-value=1.6e-60 Score=486.43 Aligned_cols=394 Identities=31% Similarity=0.553 Sum_probs=340.0
Q ss_pred hHHHHHHHHhcccc---ccC-CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCC
Q 012363 62 NKEVMEAEKKLLVG---TYN-RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMY 137 (465)
Q Consensus 62 ~~~~~~~~~~~~~~---~~~-~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~ 137 (465)
.+++++...++.++ .|. +.|+++++|+|+++||.||++||||+++++++++||+||+|++|+.+++++..+....+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~ 88 (452)
T 3n5m_A 9 TDELLAKDEQYVWHGMRPFSPNSTTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFPMSQ 88 (452)
T ss_dssp HHHHHHHHHHHBCCTTSCSCGGGCCEEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCCCCTTS
T ss_pred HHHHHHHhhhhccccccccccCCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCCccccc
Confidence 45566666777777 443 57899999999999999999999999999999999999999999999998865533456
Q ss_pred CCHHHHHHHHHHHhhcC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCc
Q 012363 138 YSIPQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHY 216 (465)
Q Consensus 138 ~~~~~~~la~~l~~~~~-~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~ 216 (465)
+++...+++++|++.++ ...|+|++||+||++.|+++++.+....+. +++++||+++++|||++..++++++.+.+
T Consensus 89 ~~~~~~~la~~l~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~---~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 165 (452)
T 3n5m_A 89 SHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQKGE---PHRYKFMSRYRGYHGNTMATMAATGQAQR 165 (452)
T ss_dssp EEHHHHHHHHHHHHHHTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTC---TTCCEEEEETTCCCCSSHHHHHSCCCGGG
T ss_pred CCHHHHHHHHHHHHhCCCCceEEEeCchHHHHHHHHHHHHHHHHhcCC---CCCCEEEEECCCcCCCCHHHHhcCCchhh
Confidence 77889999999999986 223999999999999999999977322111 14789999999999999998888887776
Q ss_pred CCCCCCCCCCceEeeC--------CC---------HHHHHhhcC---CCCeEEEEEccc-CCCCCcccCCHHHHHHHHHH
Q 012363 217 RSPFEPVMPGVNFVEY--------GN---------IEATRKLIQ---PGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDA 275 (465)
Q Consensus 217 ~~~~~~~~~~~~~~~~--------~d---------~~~le~~l~---~~~~a~vi~ep~-~~~~G~~~~~~~~l~~l~~l 275 (465)
...+.+..+++.+++. +| +++|+++++ ++++++|++||+ ++ +|.++|+++++++|+++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l 244 (452)
T 3n5m_A 166 RYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHET 244 (452)
T ss_dssp TTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHH
T ss_pred ccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHH
Confidence 6666666666655543 45 899999986 357899999999 88 99889999999999999
Q ss_pred HHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccC------CCCcCCCCCh
Q 012363 276 CDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINY------GDHGSTFAGS 348 (465)
Q Consensus 276 ~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~------~~~~~t~~~~ 348 (465)
|++||++||+||||+||||+|..++.+.+++.||++||||++++| +|+|++++++++++.+.. ..+++|+++|
T Consensus 245 ~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~ 324 (452)
T 3n5m_A 245 CQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGN 324 (452)
T ss_dssp HHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTTC
T ss_pred HHHcCCEEEEecchhCCCcccccchhhhcCCCCCEEeecccccCCCcceEEEEECHHHHHHHhhccCCCCccccCCCCCC
Confidence 999999999999999999999988899999999999999999999 999999999999999843 2477899999
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec--CC---------hHHHHHHH
Q 012363 349 PLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD--VS---------ATPVVDAC 417 (465)
Q Consensus 349 ~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~--~~---------~~~~~~~l 417 (465)
|++++|++++|+.++++++.++++++++++++.|++++..++.+..+++.|+++++++. .. ..++++.|
T Consensus 325 ~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l 404 (452)
T 3n5m_A 325 PAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNAC 404 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSSCEEEEEEEETTTTEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCCcccCCCCHHHHHHHHHHH
Confidence 99999999999988778899999999999999999988888888889999999999872 11 24688899
Q ss_pred HHCCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012363 418 RDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 418 ~~~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
+++||++.+++. ++++||+|++.+|++++++++++|++++++
T Consensus 405 ~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 405 KEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp HHTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 999999998762 489999999999999999999999998864
No 16
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=100.00 E-value=1.4e-60 Score=483.60 Aligned_cols=398 Identities=23% Similarity=0.367 Sum_probs=342.8
Q ss_pred chhccccccchhhhccCCCCCCcchHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCH
Q 012363 38 VAAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDA 117 (465)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p 117 (465)
+...|.++ ++++.+++|+|++++.+.+. .+++.|+++++++|+++||.||++||||++++++++|||+||
T Consensus 3 ~~~~s~~~-~~~~~~~~~~g~~~~~~~~~---------~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p 72 (429)
T 3k28_A 3 KFDKSIAA-FEEAQDLMPGGVNSPVRAFK---------SVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHAND 72 (429)
T ss_dssp CCHHHHHH-HHHHTTTSGGGSSSGGGGCG---------GGTCCCCCEEEEEBTEEEETTCCEEEESCGGGTTCTTCBSCH
T ss_pred CChhHHHH-HHHHHhhcCCCcCccccccc---------ccCCCCceEEEeecCEEEECCCCEEEECCCChhhcccCCCCH
Confidence 34567788 99999999999988877532 234789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhc-CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEE
Q 012363 118 DWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196 (465)
Q Consensus 118 ~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~-~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~ 196 (465)
+|++|+.+++++..+ ..++++...+|+++|++.+ +.++|+|++||+||++.|+++++.++ ++++||++
T Consensus 73 ~v~~A~~~~~~~~~~--~~~~~~~~~~l~~~la~~~~~~~~v~~~~~Gsea~~~ai~~a~~~~---------~~~~vi~~ 141 (429)
T 3k28_A 73 RVVEALKAVAERGTS--FGAPTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGYT---------GRNKILKF 141 (429)
T ss_dssp HHHHHHHHHHHHCSC--CSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHH---------TCCEEEEE
T ss_pred HHHHHHHHHHhhCcC--cCCCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhh---------CCCEEEEE
Confidence 999999999987543 3567888999999999998 48999999999999999999999876 37899999
Q ss_pred cCCcccCccccccccCCCCcCCCC--CCC-----CCCceEeeCCCHHHHHhhcC--CCCeEEEEEcccCCCCCcccCCHH
Q 012363 197 TNSFHGRTMGALALTSKEHYRSPF--EPV-----MPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKE 267 (465)
Q Consensus 197 ~~~yhg~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~d~~~le~~l~--~~~~a~vi~ep~~~~~G~~~~~~~ 267 (465)
+++|||++..++..++........ .+. ...+..+|++|+++|+++++ ++++++|++||+++++|.++++++
T Consensus 142 ~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~ 221 (429)
T 3k28_A 142 IGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPG 221 (429)
T ss_dssp ETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTT
T ss_pred CCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHH
Confidence 999999998887766543221111 111 12456789999999999997 357899999999999999999999
Q ss_pred HHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCC---CCcCC
Q 012363 268 FLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYG---DHGST 344 (465)
Q Consensus 268 ~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~---~~~~t 344 (465)
++++|+++|++||++||+||||+|| ++|..++.+.+++.||++||||++++|+|+|++++++++++.+.+. .+++|
T Consensus 222 ~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G~~iG~~~~~~~~~~~~~~~~~~~~~~t 300 (429)
T 3k28_A 222 FLEGLREVTEQNGALLIFDEVMTGF-RVAYNCGQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGT 300 (429)
T ss_dssp HHHHHHHHHHHHTCEEEEECTTTTT-TSSTTHHHHHHTCCCSEEEECGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCT
T ss_pred HHHHHHHHHHHcCCEEEEecccccc-ccCcchHHHHhCCCCceehhhhhhcCCCCeEEEEEcHHHHhhhccCCCccccCC
Confidence 9999999999999999999999999 9998888888999999999999999999999999999999988653 37789
Q ss_pred CCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC---------------
Q 012363 345 FAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS--------------- 409 (465)
Q Consensus 345 ~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~--------------- 409 (465)
|++|+++++|+.++|+.++ +++.++++++++++++.|+++...++.+..+++.|+++++++...
T Consensus 301 ~~~~~~a~aaa~aal~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (429)
T 3k28_A 301 LSGNPLAMAAGYETLVQLT-PESYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQF 379 (429)
T ss_dssp TTTCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHH
T ss_pred CCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEeeccEEEEEEecCCcccccccccccHHH
Confidence 9999999999999999876 788999999999999999998888888888999999999987311
Q ss_pred hHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012363 410 ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 410 ~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
..++++.|+++||++.+++. +.+|+ ++.+|++++++++++|++++++++
T Consensus 380 ~~~~~~~l~~~Gv~v~~~~~-~~~r~--~~~~t~e~i~~~l~~l~~~l~~~~ 428 (429)
T 3k28_A 380 FAAYYREMVEQGVFLPPSQF-EGLFL--STVHSDADIEATIAAAEIAMSKLK 428 (429)
T ss_dssp HHHHHHHHHHTTEECCSSTT-SCBCC--CTTCCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHCCeEEecCCC-CCEEE--ECCCCHHHHHHHHHHHHHHHHHHh
Confidence 26788899999999998764 45665 789999999999999999998754
No 17
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=100.00 E-value=6.9e-60 Score=473.33 Aligned_cols=384 Identities=41% Similarity=0.746 Sum_probs=345.1
Q ss_pred HhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHH
Q 012363 70 KKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRL 149 (465)
Q Consensus 70 ~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l 149 (465)
.++..+.|.+.|+++++++|+++||.||++||||+++++++++||+||+|++|+.+++++..+.+..++++...+++++|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l 87 (395)
T 3nx3_A 8 QSHIIPTYKRFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNL 87 (395)
T ss_dssp CCSCBCGGGSCSCBEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCCTTSBCHHHHHHHHHH
T ss_pred hhhhhhccCCCCceEEeeeeeEEEECCCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHH
Confidence 34566778889999999999999999999999999999999999999999999999998876655556788899999999
Q ss_pred HhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceE
Q 012363 150 VACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF 229 (465)
Q Consensus 150 ~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (465)
++.++.++|+|++||+||++.|+++++.++...+. ++++||+++++|||++..+..+++.+.+...+.+...++..
T Consensus 88 a~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~----~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (395)
T 3nx3_A 88 AKASALERVFFTNSGTESIEGAMKTARKYAFNKGV----KGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKF 163 (395)
T ss_dssp HHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTC----TTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEE
T ss_pred HHhcCCCeEEEeCCHHHHHHHHHHHHHHHhhccCC----CCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEE
Confidence 99999999999999999999999999877432221 47899999999999999888887766555555666678888
Q ss_pred eeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCccc
Q 012363 230 VEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPD 309 (465)
Q Consensus 230 ~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pd 309 (465)
+|++|+++|+++++ +++++|+++|+++++|.++++++++++|+++|++||++||+||+|+|||++|..++.+.+++.||
T Consensus 164 ~~~~d~~~l~~~l~-~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d 242 (395)
T 3nx3_A 164 AKYNDISSVEKLVN-EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPD 242 (395)
T ss_dssp ECTTCHHHHHTTCC-TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCS
T ss_pred eCCCCHHHHHHhcc-CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCC
Confidence 99999999999997 46899999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEEecccCCCccceeeEEeCHHH-HhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHc
Q 012363 310 IMTLAKPLAGGLPIGAALVTEKV-ASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLAR 388 (465)
Q Consensus 310 i~t~sK~lg~G~~iG~v~~~~~i-~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 388 (465)
++||||++++|+|+|++++++++ ++.+.+..++.++++|+++++++.++|+.++++++.++++++.+++++.|.++...
T Consensus 243 ~~t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (395)
T 3nx3_A 243 IMTSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINE 322 (395)
T ss_dssp EEEECGGGTTTSCCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecccccCCCceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999 88888777889999999999999999998877789999999999999999998888
Q ss_pred CCCceeeeccceEEEEEecC--ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012363 389 NPHVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 389 ~~~~~~~~~~g~~~~i~~~~--~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
++.+..+++.|+++++++.. ...++.+.|+++||++.+++. +++||+|++.+|++++++++++|++++++
T Consensus 323 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 323 FDFCKKRKGLGFMQGLSLDKSVKVAKVIQKCQENALLLISCGE-NDLRFLPPLILQKEHIDEMSEKLRKALKS 394 (395)
T ss_dssp CTTEEEEEEETTEEEEEECTTSCHHHHHHHHHHTTEECEEETT-TEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEeEEEEEEEEeCCcchHHHHHHHHHHCCCEEecCCC-CEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 88788888999999999843 678899999999999998865 89999999999999999999999998864
No 18
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=100.00 E-value=2.8e-59 Score=474.16 Aligned_cols=394 Identities=22% Similarity=0.350 Sum_probs=329.0
Q ss_pred ccccccchhhhccCCCCCCcchHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHH
Q 012363 41 ASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWI 120 (465)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~ 120 (465)
.|.++ ++++.+++|+|++++.+.+ ..|.+.|+++++++|+++||.||++||||+++++++++||+||+|+
T Consensus 6 ~~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~ 75 (429)
T 4e77_A 6 KSENL-YAQAQQLIPGGVNSPVRAF---------TGVGGIPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIR 75 (429)
T ss_dssp HHHHH-HHHHHHHSGGGCSSGGGGT---------TTTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHH
T ss_pred hhHHH-HHHHHhhcCCCcCcccccc---------cccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHH
Confidence 45667 8999999999987666532 2345789999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCC
Q 012363 121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNS 199 (465)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~ 199 (465)
+|+.+++++..+ ..++++...+|+++|++.++ .++|+|++||+||++.|+++++.+++ +++||+++++
T Consensus 76 ~A~~~~~~~~~~--~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGsea~~~al~~a~~~~~---------~~~ii~~~~~ 144 (429)
T 4e77_A 76 QAVIEAVERGLS--FGAPTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGYTG---------RDKIIKFEGC 144 (429)
T ss_dssp HHHHHHHTTCSC--CSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHC---------CCEEEEETTC
T ss_pred HHHHHHHHhCcc--cCCCCHHHHHHHHHHHhhCCCCCEEEEeCcHHHHHHHHHHHHHHhhC---------CCEEEEEcCc
Confidence 999999987543 34677889999999999985 89999999999999999999988763 7899999999
Q ss_pred cccCccccccccCCCCc--CCCC-----CCCCCCceEeeCCCHHHHHhhcC--CCCeEEEEEcccCCCCCcccCCHHHHH
Q 012363 200 FHGRTMGALALTSKEHY--RSPF-----EPVMPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQ 270 (465)
Q Consensus 200 yhg~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~d~~~le~~l~--~~~~a~vi~ep~~~~~G~~~~~~~~l~ 270 (465)
|||++...+...+.... ..+. ......+..++++|+++|+++++ ++++++|++||+++++|.+.++++|++
T Consensus 145 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~ 224 (429)
T 4e77_A 145 YHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLP 224 (429)
T ss_dssp CCC------------------CCCTTSCGGGGTTEEEECTTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHH
T ss_pred cCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCCHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHH
Confidence 99999865543321111 0000 11123456778899999999997 357899999999999999999999999
Q ss_pred HHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCC---CCcCCCCC
Q 012363 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYG---DHGSTFAG 347 (465)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~---~~~~t~~~ 347 (465)
+|+++|++||++||+||||+|| |+|..++.+.+++.||++||||++++|+|+|++++++++++.+.+. .+.+||++
T Consensus 225 ~l~~l~~~~~~lli~DEv~~g~-r~g~~~~~~~~~~~pdi~t~sK~~~~G~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~ 303 (429)
T 4e77_A 225 GLRALCDEFGALLIIDEVMTGF-RVALAGAQDYYHVIPDLTCLGKIIGGGMPVGAFGGRREVMNALAPTGPVYQAGTLSG 303 (429)
T ss_dssp HHHHHHHHHTCEEEEEETTTBT-TTBTTCHHHHTTCCCSEEEEEGGGGTTSCCEEEEECHHHHTTBTTTSSBCC--CCCC
T ss_pred HHHHHHHHcCCEEEEeccccCc-ccCcchHHHhcCCCCCeeeecccccCCCCeEEEEECHHHHHHhccCCCccccCCCCC
Confidence 9999999999999999999999 9998888889999999999999999999999999999999998753 47889999
Q ss_pred hHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC----------------hH
Q 012363 348 SPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS----------------AT 411 (465)
Q Consensus 348 ~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~----------------~~ 411 (465)
|+++++++.++|+.++++++.++++++++++++.|++++..++....+++.|+++++++... ..
T Consensus 304 ~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (429)
T 4e77_A 304 NPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFK 383 (429)
T ss_dssp CHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHH
Confidence 99999999999999877889999999999999999998888887778899999999998432 16
Q ss_pred HHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012363 412 PVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 412 ~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
++.+.|+++||++.+++. . |+++++.+|++++++++++|++++++
T Consensus 384 ~~~~~l~~~Gi~v~~~~~-~--~~~~~~~~t~e~i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 384 RFFHLMLEEGVYLAPSAF-E--AGFMSLAHSNEDIQKTVNAARRCFAK 428 (429)
T ss_dssp HHHHHHHHTTEECCSSTT-S--CEECCTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCeEEeecCC-C--CEEEeccCCHHHHHHHHHHHHHHHHh
Confidence 788999999999998765 3 34568899999999999999998754
No 19
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=100.00 E-value=2.7e-64 Score=510.48 Aligned_cols=384 Identities=26% Similarity=0.312 Sum_probs=334.0
Q ss_pred hccccccchhhhccCCCCCCcchHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHH
Q 012363 40 AASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119 (465)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v 119 (465)
..|.++ ++++.+++|+|++++++.+. +.|+++++++|+++||+|||+||||+++++++++||+||+|
T Consensus 55 ~~s~~l-~~~~~~~~~~g~~~~~~~~~------------~~p~~~~~~~G~~l~D~dG~~yiD~~~~~~~~~lGh~~p~V 121 (465)
T 2yky_A 55 PVSAGH-HERARRSMPGGNTRSILFHR------------PFPLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVI 121 (465)
Confidence 356777 99999999999988776542 56999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhc-CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcC
Q 012363 120 IKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN 198 (465)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~-~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~ 198 (465)
++|+.+++++... ..++++...+|+++|++++ +.++++|+|||+||++.|+++++.+++ +++||++++
T Consensus 122 ~~Av~~q~~~~~~--~~~~~~~~~~Lae~L~~~~p~~~~v~~~nSGseA~~~Aik~ar~~tg---------r~~ii~~~~ 190 (465)
T 2yky_A 122 RAAVERALAVGLN--LSTQTENEALFAEAVCDRFPSIDLVRFTNSGTEANLMALATATAITG---------RKTVLAFDG 190 (465)
Confidence 9999999987432 3467777899999999998 588999999999999999999988764 889999999
Q ss_pred CcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC--CCeEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q 012363 199 SFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC 276 (465)
Q Consensus 199 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~--~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~ 276 (465)
+|||++..++ ++ +. .... ...+..+|++|+++|+++++. +++++|++||+++++|.++++++|+++|+++|
T Consensus 191 ~yHG~~~~~~--sg-~~-~~g~---~~~~~~~~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~ 263 (465)
T 2yky_A 191 GYHGGLLNFA--SG-HA-PTNA---PYHVVLGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEA 263 (465)
Confidence 9999998877 22 11 1011 114456788999999999973 57899999999999998899999999999999
Q ss_pred HHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccC-----CCCcCCCCChHHH
Q 012363 277 DDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY-----GDHGSTFAGSPLV 351 (465)
Q Consensus 277 ~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~-----~~~~~t~~~~~~~ 351 (465)
++||++||+||||+ | |+|.+++++++++.||++||||++++|+|+||+++++++++.+.+ ..+.+||++||++
T Consensus 264 ~~~g~llI~DEv~~-~-r~g~~~a~~~~gv~pDi~t~sK~lg~G~piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla 341 (465)
T 2yky_A 264 SRCGALLIFDEVMT-S-RLSGGGAQEMLGISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILT 341 (465)
Confidence 99999999999999 7 889888899999999999999999999999999999999999876 2477899999999
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC---------------ChHHHHHH
Q 012363 352 CNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV---------------SATPVVDA 416 (465)
Q Consensus 352 ~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~---------------~~~~~~~~ 416 (465)
|+|++++|+.++++++++++++++++++++|++++.+++.+..+++.|+|+++++.. ....+++.
T Consensus 342 ~aAa~aaL~~l~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ 421 (465)
T 2yky_A 342 MSAGHAALTQIYTRQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFH 421 (465)
Confidence 999999999998888999999999999999999887777777889999999998732 13468889
Q ss_pred HHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012363 417 CRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 417 l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
|+++||++.|++.+ . +++++|++||++++++|++++++++
T Consensus 422 ll~~GV~v~p~~~~-~----~s~~~t~edid~~l~~l~~~l~~~~ 461 (465)
T 2yky_A 422 MLRKGIYLAPRGMY-A----LSLEIADAGRDAFAEALADFIGEQR 461 (465)
Confidence 99999999987642 1 7889999999999999999988764
No 20
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=100.00 E-value=1.2e-58 Score=469.14 Aligned_cols=395 Identities=23% Similarity=0.323 Sum_probs=340.0
Q ss_pred hccccccchhhhccCCCCCCcchHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHH
Q 012363 40 AASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119 (465)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v 119 (465)
..|.++ ++++.+++|+|++++.+.+ ..+.+.|+++++|+|+++||.||++||||+++++++++||+||+|
T Consensus 4 ~~s~~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v 73 (427)
T 3fq8_A 4 IKSDEI-FAAAQKLMPGGVSSPVRAF---------KSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEV 73 (427)
T ss_dssp HHHHHH-HHHHTTTSGGGSSSGGGGC---------TTTTSCCCCEEEEEBTEEEETTSCEEEESSGGGTTCTTCBTCHHH
T ss_pred chHHHH-HHHHHhhcCCCcccccccc---------cccCCCCceEEEeeeCEEEECCCCEEEECCCchhhhccCCCCHHH
Confidence 456777 9999999999987766532 234578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcC
Q 012363 120 IKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN 198 (465)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~ 198 (465)
++|+.+++++..+ ..++++...+|+++|++.++ .++|+|++||+||++.|+++++.+++ +++||++++
T Consensus 74 ~~a~~~~~~~~~~--~~~~~~~~~~la~~l~~~~~~~~~v~~~~ggsea~~~al~~a~~~~~---------~~~vi~~~~ 142 (427)
T 3fq8_A 74 IEALKVAMEKGTS--FGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYTG---------RDKIIKFEG 142 (427)
T ss_dssp HHHHHHHHTTCSC--CSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHC---------CCEEEEEET
T ss_pred HHHHHHHHHhCCC--cCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhC---------CCEEEEECC
Confidence 9999999987544 23477889999999999985 88999999999999999999998864 789999999
Q ss_pred CcccCccccccccCCCCcCC--CCCCC-----CCCceEeeCCCHHHHHhhcCC--CCeEEEEEcccCCCCCcccCCHHHH
Q 012363 199 SFHGRTMGALALTSKEHYRS--PFEPV-----MPGVNFVEYGNIEATRKLIQP--GKTAAVFVEPIQGEGGIYSATKEFL 269 (465)
Q Consensus 199 ~yhg~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~d~~~le~~l~~--~~~a~vi~ep~~~~~G~~~~~~~~l 269 (465)
+|||++..++..++...... +..+. ...+..+|++|+++|+++++. +++++|++||+++++|.+.++++|+
T Consensus 143 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l 222 (427)
T 3fq8_A 143 CYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFL 222 (427)
T ss_dssp CCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHH
T ss_pred CcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHH
Confidence 99999988776654332110 11111 123567889999999999973 4799999999999999999999999
Q ss_pred HHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCC---CCcCCCC
Q 012363 270 QFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYG---DHGSTFA 346 (465)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~---~~~~t~~ 346 (465)
++|+++|++||++||+||+|+|| ++|..+..+.+++.||++||||++++|+|+|++++++++++.+.+. .+.+|++
T Consensus 223 ~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~ 301 (427)
T 3fq8_A 223 EGLREITLEHDALLVFDEVITGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLS 301 (427)
T ss_dssp HHHHHHHHHTTCEEEEECTTTBT-TTBTTHHHHHTTCCCSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTT
T ss_pred HHHHHHHHHcCCEEEEecccccc-ccCcchhhHhcCCCCChhhhhhhhhCCcceEEEEEcHHHHHhhccCCCccccCCCC
Confidence 99999999999999999999999 8888778888999999999999999999999999999999988753 4778999
Q ss_pred ChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC---------------hH
Q 012363 347 GSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS---------------AT 411 (465)
Q Consensus 347 ~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~---------------~~ 411 (465)
+|+++++++.++|+.++++++.++++++++++++.|+++...++....+++.|+++++++... ..
T Consensus 302 ~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (427)
T 3fq8_A 302 GNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFS 381 (427)
T ss_dssp TCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHH
Confidence 999999999999998877889999999999999999998877777677889999999988321 35
Q ss_pred HHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012363 412 PVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 412 ~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
++.+.|+++||++.+++. .|+++++.+|++++++++++|++++++
T Consensus 382 ~l~~~l~~~Gi~v~~~~~---~r~~~~~~~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 382 RFHRGMLEQGIYLAPSQF---EAGFTSLAHTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp HHHHHHHHTTEECCSSTT---SCEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCcEEecCCC---CCEEeeCcCCHHHHHHHHHHHHHHHHh
Confidence 788999999999998764 367789999999999999999998875
No 21
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=100.00 E-value=5.1e-60 Score=509.44 Aligned_cols=394 Identities=24% Similarity=0.374 Sum_probs=324.8
Q ss_pred HHHHHhccccccCC-------CceEEEeeecc--EEEeCCCC----EEEecccCcccccCCCC-CHHHHHHHHHHHhhcc
Q 012363 66 MEAEKKLLVGTYNR-------APVVLASGKGC--KLYDAEGR----EYLDLSSGIAVNALGHG-DADWIKAVVDQANVLT 131 (465)
Q Consensus 66 ~~~~~~~~~~~~~~-------~p~~~~~~~G~--~~~d~dG~----~ylD~~~~~~~~~lGh~-~p~v~~a~~~~~~~~~ 131 (465)
.+...++.|++|.. .|+++++++|. |+||.||+ +|||+++++|++++||+ ||+|.+|+.+|++++.
T Consensus 335 ~~~~~~~~whp~t~~~~~~~~~p~~i~~a~G~g~~l~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~ 414 (831)
T 4a0g_A 335 AKLAGEVFWWPFTQHKLVHQETVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFG 414 (831)
T ss_dssp HHHHHHHBCCTTCCGGGCCGGGCEEEEEEETTEEEEEEHHHHSEEEEEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhhhhccCCccCcccccCCCCeEEEEeeccceEEEECCCCccchheeeecccHhhcCCCCCCCHHHHHHHHHHHhhcc
Confidence 34455677877652 37899999995 99999999 99999999999999999 9999999999999987
Q ss_pred cccC-CCCCHHHHHHHHHHHhhcC---CCeEEecCCHHHHHHHHHHHH-HHHhhhcCCCC-----CCCCceEEEEcCCcc
Q 012363 132 HVSN-MYYSIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFA-RKFQRHSNPDS-----KEPATEFVSFTNSFH 201 (465)
Q Consensus 132 ~~~~-~~~~~~~~~la~~l~~~~~---~~~v~~~~sG~eA~~~al~~a-~~~t~~~~~~~-----~~~~~~ii~~~~~yh 201 (465)
+... .+.+++..+|+++|++..+ .++|+|+|||+|||+.|+|++ +.|+...+... .+++.+||.++.+||
T Consensus 415 h~~~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syH 494 (831)
T 4a0g_A 415 HVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYH 494 (831)
T ss_dssp SCCCTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCC
T ss_pred cccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcc
Confidence 6532 3567889999999999987 679999999999999999999 66775433210 013779999999999
Q ss_pred cCccccccccCCCCcCC----CC----CCCC--------CCceEee--------------CCCH----------------
Q 012363 202 GRTMGALALTSKEHYRS----PF----EPVM--------PGVNFVE--------------YGNI---------------- 235 (465)
Q Consensus 202 g~~~~~~~~~~~~~~~~----~~----~~~~--------~~~~~~~--------------~~d~---------------- 235 (465)
|.+.+++++++...++. ++ .+.. +++.+++ ++|+
T Consensus 495 G~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (831)
T 4a0g_A 495 GDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARI 574 (831)
T ss_dssp CSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHH
T ss_pred cCceeeeeccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHH
Confidence 99999999987654432 11 0000 1222221 2232
Q ss_pred --HHHHhhcC-------CCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccC
Q 012363 236 --EATRKLIQ-------PGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYG 305 (465)
Q Consensus 236 --~~le~~l~-------~~~~a~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~ 305 (465)
++|+++|+ .+++++||+||+ ++.+|+++++++||++|+++|++||++||+|||++||||+|.+|++++++
T Consensus 575 ~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~g 654 (831)
T 4a0g_A 575 YSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLG 654 (831)
T ss_dssp HHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHS
T ss_pred HHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcC
Confidence 56888875 357999999997 99999999999999999999999999999999999999999999999999
Q ss_pred CcccEEEecccCCCc-cceeeEEeCHHHHhhccCC------CCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 012363 306 IFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG------DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYF 378 (465)
Q Consensus 306 ~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~------~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l 378 (465)
+.||++|+||+++|| +|+|++++++++++.+... .|++||++||++|+|++++|+.++++++.+++.++++++
T Consensus 655 v~PDiitlsK~L~gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l 734 (831)
T 4a0g_A 655 CKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTL 734 (831)
T ss_dssp SCCSEEEECGGGGTTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBB
T ss_pred CCCcEEEEecccccCccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999 7999999999999988653 388999999999999999999998777777777666655
Q ss_pred H----HHHHHHHHcCCCceeeeccceEEEEEecC----------ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHH
Q 012363 379 K----ETLKQKLARNPHVKDVRGLGLIIGIEFDV----------SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQ 444 (465)
Q Consensus 379 ~----~~l~~~~~~~~~~~~~~~~g~~~~i~~~~----------~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e 444 (465)
+ +.+.+.+.++|.+..+++.|+|+++++.. .+.++.+.|+++||++.|.+ +.+||+|++.+|++
T Consensus 735 ~~~l~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p~g--~~lrl~pp~~~t~e 812 (831)
T 4a0g_A 735 RELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTRPLG--NVIYLMCGPCTSPE 812 (831)
T ss_dssp CCCSCHHHHHHHHHSTTEEEEEEETTEEEEEEC---------CHHHHHHHHHHHHTTEECCCBT--TEEEEECCTTCCHH
T ss_pred HHHHHHHHHHHHhhCCCceeEeecccEEEEEEecCccccccchHHHHHHHHHHHHCCcEEEecC--CEEEEECCCCCCHH
Confidence 4 34555566788899999999999999832 13468889999999999875 79999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 012363 445 ELDQAVEILCKTLPVLD 461 (465)
Q Consensus 445 ~i~~~l~~l~~~l~~~~ 461 (465)
+|++++++|.++++++.
T Consensus 813 ~id~~~~~l~~~l~~l~ 829 (831)
T 4a0g_A 813 ICRRLLTKLYKRLGEFN 829 (831)
T ss_dssp HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999987663
No 22
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=100.00 E-value=3.1e-58 Score=465.02 Aligned_cols=395 Identities=38% Similarity=0.694 Sum_probs=326.6
Q ss_pred chHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCH
Q 012363 61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140 (465)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~ 140 (465)
.+..+++.+.++.++.|.+.|+++++++|+++||.||++||||.++++++++||+||+|++|+.+++++..+.+..+..+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~ 99 (420)
T 2pb2_A 20 QTAITRATFDEVILPVYAPADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNE 99 (420)
T ss_dssp -------------------CCSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTSCCH
T ss_pred hHHHHHHHHHHhhhccccCCCceEEeeecCEEEECCCCEEEEccccccccccCCCCHHHHHHHHHHHHhcccccCccCCH
Confidence 34455566667777788888999999999999999999999999999999999999999999999998765544446678
Q ss_pred HHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCC
Q 012363 141 PQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPF 220 (465)
Q Consensus 141 ~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 220 (465)
...+++++|+++++.++|+|++||+||++.|+++++.+....+.+ ++++||+++|+|||++..++..++...+...+
T Consensus 100 ~~~~l~~~la~~~g~~~v~~~~ggteA~~~al~~~~~~~~~~~~~---g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~ 176 (420)
T 2pb2_A 100 PALRLGRKLIDATFAERVLFMNSGTEANETAFKLARHYACVRHSP---FKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGF 176 (420)
T ss_dssp HHHHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHHHHHHHHTCT---TCCEEEEETTCCCCSSHHHHHHSSCHHHHTTS
T ss_pred HHHHHHHHHHhhCCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCC---CCCEEEEEeCCcCCcCHHHHHhcCCccccccC
Confidence 899999999999999999999999999999999988763221111 35689999999999998877766554444455
Q ss_pred CCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccc
Q 012363 221 EPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300 (465)
Q Consensus 221 ~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~ 300 (465)
.|..+++..+|++|+++|++++++ ++++|++||+++++|+++++.+++++|+++|++||++||+||+|+|||++|..++
T Consensus 177 ~p~~~~~~~~~~~d~~~le~~i~~-~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~ 255 (420)
T 2pb2_A 177 GPKPADIIHVPFNDLHAVKAVMDD-HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFA 255 (420)
T ss_dssp SSCCSCEEEECTTCHHHHHHHCCT-TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSH
T ss_pred CCCCCCeEEecCCCHHHHHHHhcc-CceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHH
Confidence 677777888899999999999974 6899999999998888888999999999999999999999999999999998777
Q ss_pred ccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Q 012363 301 HEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKE 380 (465)
Q Consensus 301 ~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~ 380 (465)
++.+++.||++||||++++|+|+|++++++++++.+.+..+..||++|+++++++.++|+.++++++.++++++++++++
T Consensus 256 ~~~~~~~~diit~sK~l~~G~~iG~~~~~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~~~~~~~l~~ 335 (420)
T 2pb2_A 256 YMHYGVTPDILTSAKALGGGFPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQ 335 (420)
T ss_dssp HHHHTCCCSEEEECGGGGTTSCCEEEEECHHHHTTCC----CCEECCCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCeEEecccccCCCceEEEEEhHHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 77888999999999999999999999999999998876667889999999999999999998777889999999999999
Q ss_pred HHHHHHHcCCCceeeeccceEEEEEecC----ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012363 381 TLKQKLARNPHVKDVRGLGLIIGIEFDV----SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 381 ~l~~~~~~~~~~~~~~~~g~~~~i~~~~----~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
.|+++...++.+..+++.|+++++++.. ...++.+.|+++||++.+++. +++||+|++.++++++++++++|+++
T Consensus 336 ~L~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~-~~iRl~~~~~~t~eei~~~~~~l~~~ 414 (420)
T 2pb2_A 336 HLQAIDEQFDIFSDIRGMGLLIGAELKPKYKGRARDFLYAGAEAGVMVLNAGA-DVMRFAPSLVVEEADIHEGMQRFAQA 414 (420)
T ss_dssp HHHHHHHHHCCEEEEEEETTEEEEEECGGGTTCHHHHHHHHHHTTEECEESST-TEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCeEEEEecceEEEEEECCCchHHHHHHHHHHHHCCCEEEeCCC-CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9988755567666778899999998842 467899999999999998764 89999999999999999999999999
Q ss_pred HHHh
Q 012363 457 LPVL 460 (465)
Q Consensus 457 l~~~ 460 (465)
++++
T Consensus 415 l~~~ 418 (420)
T 2pb2_A 415 VGKV 418 (420)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 23
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=100.00 E-value=1.9e-58 Score=468.19 Aligned_cols=386 Identities=30% Similarity=0.472 Sum_probs=315.1
Q ss_pred ccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCCCHHHHHHHHHHH
Q 012363 72 LLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYYSIPQIELAKRLV 150 (465)
Q Consensus 72 ~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~ 150 (465)
+.+++|.+.|+++++++|+++||.||++||||+++++++++||+||+|++|+.+++++..+++ ..++++...+++++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la 82 (430)
T 3i4j_A 3 NVFYRSSKPYPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLA 82 (430)
T ss_dssp CBCCSSSSCCCEEEEEEBTEEEETTSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCEEHHHHHHHHHHH
T ss_pred ccccCCCCCCceEEeeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHH
Confidence 456667778999999999999999999999999999999999999999999999998865443 2566777999999999
Q ss_pred hhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCC--C
Q 012363 151 ACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP--G 226 (465)
Q Consensus 151 ~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~--~ 226 (465)
+.++ .++|+|++||+||++.|+++++.+....+.. ++++||+++|+|||++..+..+++...+...+.+..+ +
T Consensus 83 ~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~---~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (430)
T 3i4j_A 83 RFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEP---GRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEA 159 (430)
T ss_dssp HHTTCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCT---TCCEEEEETTC-------------------------CGGG
T ss_pred HhCCCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCC
Confidence 9985 7899999999999999999998763322221 4789999999999999888887776655555556556 6
Q ss_pred ceEeeCCC--------HHHHHhhcCC---CCeEEEEEcccCC-CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCC
Q 012363 227 VNFVEYGN--------IEATRKLIQP---GKTAAVFVEPIQG-EGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR 294 (465)
Q Consensus 227 ~~~~~~~d--------~~~le~~l~~---~~~a~vi~ep~~~-~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr 294 (465)
+.++|+++ +++|+++++. +++++|++||+++ ++|.++++++++++|+++|++||++||+||||+|||+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~ 239 (430)
T 3i4j_A 160 WPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGR 239 (430)
T ss_dssp SCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred ceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCc
Confidence 77777763 4899998862 5789999999999 9999999999999999999999999999999999999
Q ss_pred CCcccccccc-CCcccEEEecccCCCc-cceeeEEeCHHHHhhccCC----CCcCCCCChHHHHHHHHHHHHHhcCchHH
Q 012363 295 TGYLWAHEHY-GIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG----DHGSTFAGSPLVCNAAIAVLDKISNPAFL 368 (465)
Q Consensus 295 ~g~~~~~~~~-~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~----~~~~t~~~~~~~~~aa~a~L~~~~~~~~~ 368 (465)
+|..++.+++ ++.||++||||++++| +|+|++++++++++.+... .+..||++|+++++|+.++|+.++++++.
T Consensus 240 ~g~~~~~~~~~~~~~di~t~sK~l~~G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 319 (430)
T 3i4j_A 240 CGSPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLT 319 (430)
T ss_dssp TSSSSGGGGTTTCCCSEEEECGGGTTTSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHH
T ss_pred ccchhhhhhhcCCCCcEEEEcccccCCccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHH
Confidence 9988888888 9999999999999999 9999999999999988653 67889999999999999999988778899
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec-----------CChHHHHHHHHHCCceEeec-----C-CCC
Q 012363 369 ASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD-----------VSATPVVDACRDSGLLVLTA-----G-KGN 431 (465)
Q Consensus 369 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~-----------~~~~~~~~~l~~~Gv~v~~~-----~-~~~ 431 (465)
++++++.+++++.|.+++..+|.+..+++.|+|+++++. ....++.+.|+++||++.++ + .++
T Consensus 320 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~ 399 (430)
T 3i4j_A 320 GAAKERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGD 399 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEC------------CHHHHHHHHHHTTEECC-----------C
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEecccccCCCCCC
Confidence 999999999999999988888888889999999999883 11257899999999999886 1 147
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012363 432 VVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 432 ~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
++||++++.+|++++++++++|+++++++
T Consensus 400 ~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 400 HLLLGPPLSITAAEVDGLLALLAGALEDV 428 (430)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999865
No 24
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=100.00 E-value=1.5e-57 Score=462.79 Aligned_cols=373 Identities=29% Similarity=0.525 Sum_probs=323.4
Q ss_pred CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCCCHHHHHHHHHHHhhcC--C
Q 012363 79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYYSIPQIELAKRLVACSF--A 155 (465)
Q Consensus 79 ~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~~~--~ 155 (465)
..|+++++++|+++||.||++||||+++.+++++||+||+|++|+.+++++..++. ..++++...+++++|++.++ .
T Consensus 24 ~~~~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~ 103 (439)
T 3dxv_A 24 FFPLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASNAPAVTLAERLLASFPGEG 103 (439)
T ss_dssp SSCCEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCSCSCSSSSEEHHHHHHHHHHHHTTTCTT
T ss_pred CCCceEEEeeeCEEEeCCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCC
Confidence 36899999999999999999999999999999999999999999999998765432 45567789999999999984 5
Q ss_pred -CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCC--cCCCCCCCCCCceEeeC
Q 012363 156 -DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH--YRSPFEPVMPGVNFVEY 232 (465)
Q Consensus 156 -~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 232 (465)
++|+|++||+||++.|+++++.++ ++++||+++++|||++..++.+++... ++..+.+..+++..+|+
T Consensus 104 ~~~v~~~~ggsea~~~al~~~~~~~---------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (439)
T 3dxv_A 104 THKIWFGHSGSDANEAAYRAIVKAT---------GRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPY 174 (439)
T ss_dssp TEEEEEESSHHHHHHHHHHHHHHHH---------SCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSS
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHHh---------CCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCC
Confidence 799999999999999999988766 378899999999999998888776544 44444454445556666
Q ss_pred C----------CHHHHHhhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc
Q 012363 233 G----------NIEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299 (465)
Q Consensus 233 ~----------d~~~le~~l~---~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~ 299 (465)
+ |+++|+++++ .+++++|+++|+++++|.+.++++++++|+++|++||++||+||+|+|||++|..+
T Consensus 175 ~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~ 254 (439)
T 3dxv_A 175 RPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLH 254 (439)
T ss_dssp SCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSS
T ss_pred CcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhh
Confidence 5 6899999993 45799999999999999999999999999999999999999999999999999877
Q ss_pred cccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 012363 300 AHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFK 379 (465)
Q Consensus 300 ~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~ 379 (465)
..+.+++.||++||||++++|+|+|++++++++++.+.+..+..|+ +||++++++.++|+.++++++.++++++.++++
T Consensus 255 ~~~~~~~~~di~s~sK~~~~G~riG~~~~~~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~ 333 (439)
T 3dxv_A 255 CFEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASAFAMQTLH-GNPISAAAGLAVLETIDRDDLPAMAERKGRLLR 333 (439)
T ss_dssp GGGGTTCCCSEEEECGGGGTTSCCEEEEEEHHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEcchhcCCcceEEEEECHHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999999999877778899 999999999999998877889999999999999
Q ss_pred HHHHHHHHcCCCceeeeccceEEEEEec----------CChHHHHHHHHHCCceEeecCC-CCEEEEecCCCCcHHHHHH
Q 012363 380 ETLKQKLARNPHVKDVRGLGLIIGIEFD----------VSATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQ 448 (465)
Q Consensus 380 ~~l~~~~~~~~~~~~~~~~g~~~~i~~~----------~~~~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~e~i~~ 448 (465)
+.|.++...++.+..+++.|+|+++++. ....++.+.|+++||++.+++. ++++||++++.+|++++++
T Consensus 334 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~ 413 (439)
T 3dxv_A 334 DGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHK 413 (439)
T ss_dssp HHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEESTTSCEEEECCCTTCCHHHHHH
T ss_pred HHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCCCCHHHHHH
Confidence 9999988888888888999999999872 1245788999999999998764 4789999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 012363 449 AVEILCKTLPVLD 461 (465)
Q Consensus 449 ~l~~l~~~l~~~~ 461 (465)
++++|+++++++.
T Consensus 414 ~l~~l~~~l~~~~ 426 (439)
T 3dxv_A 414 ALDLLDRAFSELS 426 (439)
T ss_dssp HHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 25
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=100.00 E-value=3.9e-56 Score=451.73 Aligned_cols=394 Identities=23% Similarity=0.331 Sum_probs=328.5
Q ss_pred ccccccchhhhccCCCCCCcchHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHH
Q 012363 41 ASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWI 120 (465)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~ 120 (465)
.|.++ ++++.+++++|+.+..+.+. .+.|+++++++|+++||.||++||||.++++++++||+||+|+
T Consensus 11 ~~~~~-~~~~~~~~~~~~~~~~~~~~-----------~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~ 78 (434)
T 2epj_A 11 KSRML-FERTKELFPGGVNSPVRAAV-----------KPYPFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVL 78 (434)
T ss_dssp HHHHH-HHHHTTTSGGGSSSGGGGGC-----------SSSCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHH
T ss_pred chHHH-HHHHHhhcCCCcCccccccc-----------CCCCeeEEeeecCEEEECCCCEEEEcccchhcccCCCCCHHHH
Confidence 34556 78888888888766655320 2569999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccCCCCCHHHHHHHHHHHhhc-CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCC
Q 012363 121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNS 199 (465)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~-~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~ 199 (465)
+|+.+++++..+ ..++.+...+++++|++++ +.++|+|++||+||++.|+++++.+++ +++||+++++
T Consensus 79 ~a~~~~~~~~~~--~~~~~~~~~~l~~~la~~~~~~~~v~~~~sgseA~~~al~~ar~~~~---------~~~vi~~~~~ 147 (434)
T 2epj_A 79 EAVEEALARGWL--YGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGYTG---------RDLILKFDGC 147 (434)
T ss_dssp HHHHHHHHTCSC--CSSCCHHHHHHHHHHHHHHCTTCEEEEESSHHHHHHHHHHHHHHHHC---------CCEEEEEETC
T ss_pred HHHHHHHHhCCC--CCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhC---------CCeEEEEcCC
Confidence 999999987432 3457778899999999998 689999999999999999999887763 7789999999
Q ss_pred cccCccccccccCCCCcC--CCCC-CC----CCCceEeeCCCHHHHHhhcCC--CCeEEEEEcccCCCCCcccCCHHHHH
Q 012363 200 FHGRTMGALALTSKEHYR--SPFE-PV----MPGVNFVEYGNIEATRKLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQ 270 (465)
Q Consensus 200 yhg~~~~~~~~~~~~~~~--~~~~-~~----~~~~~~~~~~d~~~le~~l~~--~~~a~vi~ep~~~~~G~~~~~~~~l~ 270 (465)
|||++..++...+..... .+.. .. ...+..+|++|+++|+++++. +++++|++||+++++|.+++++++++
T Consensus 148 yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~ 227 (434)
T 2epj_A 148 YHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLA 227 (434)
T ss_dssp CCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHH
T ss_pred cCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCCCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHH
Confidence 999998776554321100 0010 01 124566788999999999973 47899999999999998888999999
Q ss_pred HHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccC-C--CCcCCCCC
Q 012363 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY-G--DHGSTFAG 347 (465)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~-~--~~~~t~~~ 347 (465)
+|+++|++||++||+||+|+|| ++|..++++.+++.||++||||++++|+|+|++++++++++.+.+ . .+.+||++
T Consensus 228 ~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~ 306 (434)
T 2epj_A 228 ALQRLSRESGALLILDEVVTGF-RLGLEGAQGYFNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNA 306 (434)
T ss_dssp HHHHHHHHHTCEEEEEETTTTT-TSSTTHHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTT
T ss_pred HHHHHHHHcCCEEEEEcchhce-eCCcchhhHHhCCCCCeeeecchhcCCcceeeeeecHHHHHhhccCCCcccCCCCCc
Confidence 9999999999999999999999 778777778889999999999999999999999999999998875 2 36688999
Q ss_pred hHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC---------------ChHH
Q 012363 348 SPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV---------------SATP 412 (465)
Q Consensus 348 ~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~---------------~~~~ 412 (465)
||++++++.++|+.++++++.++++++++++++.|+++..+++....+++.|+++++++.. ...+
T Consensus 307 ~~~~~aa~~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 386 (434)
T 2epj_A 307 HPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVK 386 (434)
T ss_dssp CHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHH
Confidence 9999999999999887678999999999999999998766566655678899999999843 1356
Q ss_pred HHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012363 413 VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 413 ~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
+.+.|+++||++.+++. . |+++++.+|++++++++++|+++++++.
T Consensus 387 ~~~~l~~~Gv~v~~~~~-~--~~~~~~~~t~e~i~~~l~~l~~~l~~~~ 432 (434)
T 2epj_A 387 LHEEMLRRGVFIAPSNL-E--AVFTGLPHQGEALEIAVEGLRSSLKTVL 432 (434)
T ss_dssp HHHHHHHTTEECCSSTT-S--CEECCTTCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCeEEeccCC-C--cEEEeccCCHHHHHHHHHHHHHHHHHHh
Confidence 88999999999998764 2 4567889999999999999999998763
No 26
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=100.00 E-value=2.8e-56 Score=451.39 Aligned_cols=392 Identities=27% Similarity=0.405 Sum_probs=329.2
Q ss_pred hccccccchhhhccCCCCCCcchHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHH
Q 012363 40 AASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119 (465)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v 119 (465)
..|.++ ++++.+++|+|++++.+.+. .|...|+++++++|+++||.||++||||.++.+++++||+||+|
T Consensus 4 ~~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~p~~~~~~~g~~~~d~~g~~~iD~~~~~~~~~lG~~~p~v 73 (424)
T 2e7u_A 4 PISEAY-FQEAKRHIPGGVSSPVRAFK---------AVGGTPPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKV 73 (424)
T ss_dssp HHHHHH-HHHHHHHSGGGSSSGGGGCT---------TTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHH
T ss_pred chHHHH-HHHHHHhcCCCcCCcceecc---------ccCCCCeeEEeeecCEEEeCCCCEEEEccccccccccCCCCHHH
Confidence 456677 89999999999888776431 23456999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhc-CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcC
Q 012363 120 IKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN 198 (465)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~-~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~ 198 (465)
++|+.+++++..+ ..++.+...+++++|++++ +.++|+|++||+||++.|+++++.+++ +++||+++|
T Consensus 74 ~~a~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~ea~~~al~~ar~~~~---------~~~vi~~~~ 142 (424)
T 2e7u_A 74 LARVRETLERGLT--FGAPSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYTG---------RPYIVKFRG 142 (424)
T ss_dssp HHHHHHHHHTCSC--CSSCCHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHHHHHHC---------CCEEEEETT
T ss_pred HHHHHHHHHhCCC--CCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhC---------CCEEEEECC
Confidence 9999999987432 3467777999999999998 589999999999999999999887774 688999999
Q ss_pred CcccCccccccccCCCC--cCCCCCC-C----CCCceEeeCCCHHHHHhhcCC--CCeEEEEEcccCCCCCcccCCHHHH
Q 012363 199 SFHGRTMGALALTSKEH--YRSPFEP-V----MPGVNFVEYGNIEATRKLIQP--GKTAAVFVEPIQGEGGIYSATKEFL 269 (465)
Q Consensus 199 ~yhg~~~~~~~~~~~~~--~~~~~~~-~----~~~~~~~~~~d~~~le~~l~~--~~~a~vi~ep~~~~~G~~~~~~~~l 269 (465)
+|||++..++...+... +..+... . ...+..+|++|+++|+++++. +++++|++||+++++|.++++++++
T Consensus 143 ~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l 222 (424)
T 2e7u_A 143 NYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFL 222 (424)
T ss_dssp CCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHH
T ss_pred CcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCCCCHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHH
Confidence 99999887765443211 1001110 0 124566788999999999862 4789999999999989888899999
Q ss_pred HHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccC-C--CCcCCCC
Q 012363 270 QFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY-G--DHGSTFA 346 (465)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~-~--~~~~t~~ 346 (465)
++|+++ ++||++||+||+|+|| ++|..++++.+++.||++||||++++|+|+|++++++++++.+.+ . .+.+||+
T Consensus 223 ~~l~~l-~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~ 300 (424)
T 2e7u_A 223 KALHEA-KAYGVLLIADEVMTGF-RLAFGGATELLGLKPDLVTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLS 300 (424)
T ss_dssp HHHHHG-GGGTCEEEEECTTTTT-TSSTTHHHHHHTCCCSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTC
T ss_pred HHHHHH-HHcCCEEEEecCcccc-ccchhHHHHHhCCCcchhhhhhhhhCCcceEEEEEcHHHHhhhcccCCcccCCCCC
Confidence 999999 9999999999999999 888777778889999999999999999999999999999998875 2 3678999
Q ss_pred ChHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC---------------Ch
Q 012363 347 GSPLVCNAAIAVLDKISN-PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV---------------SA 410 (465)
Q Consensus 347 ~~~~~~~aa~a~L~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~---------------~~ 410 (465)
+||++++|+.++|+.+++ +++.++++++++++++.|+++..+++....+++.|+|+++++.. ..
T Consensus 301 ~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~ 380 (424)
T 2e7u_A 301 GNPLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELF 380 (424)
T ss_dssp SCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHH
T ss_pred CCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHH
Confidence 999999999999998876 78999999999999999998876677655678899999999842 13
Q ss_pred HHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012363 411 TPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 411 ~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
.++.+.|+++||++.+++. . |+++++.+|++++++++++|++++
T Consensus 381 ~~~~~~l~~~Gv~v~~~~~-~--~~~~~~~~t~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 381 KRFFHGLLDRGIYWPPSNF-E--AAFLSVAHREEDVEKTLEALRKAL 424 (424)
T ss_dssp HHHHHHHHTTTEECCSSSS-S--CEECCTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCeEEeccCC-C--ceEeeccCCHHHHHHHHHHHHHhC
Confidence 4688899999999998764 2 456688999999999999998763
No 27
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=100.00 E-value=1e-55 Score=448.48 Aligned_cols=388 Identities=30% Similarity=0.507 Sum_probs=323.5
Q ss_pred HHHHHHHHhccccccCC-CceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHH
Q 012363 63 KEVMEAEKKLLVGTYNR-APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIP 141 (465)
Q Consensus 63 ~~~~~~~~~~~~~~~~~-~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~ 141 (465)
+++.++..++..+.+.. .|+++.+++|+++||.||++||||.++.++.++||+||+|++|+.+++++..+....++.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~ 86 (433)
T 1zod_A 7 ATFWRNARHHLVRYGGTFEPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSRP 86 (433)
T ss_dssp HHHHHHHHHHCCCCSSCCCSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTCCCHH
T ss_pred HHHHHHHHHhhcccccccCCceEEEeecCEEEeCCCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCcccccccCCHH
Confidence 33444443333333433 48899999999999999999999999999899999999999999999987644334566777
Q ss_pred HHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCC
Q 012363 142 QIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP 219 (465)
Q Consensus 142 ~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 219 (465)
..+++++|+++++ .++|+|++||+||++.|+++++.+++ +++||+++|+|||++..++..++... ...
T Consensus 87 ~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~~~---------~~~vi~~~~~yhg~~~~~~~~~~~~~-~~~ 156 (433)
T 1zod_A 87 VVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTG---------KYEIVGFAQSWHGMTGAAASATYSAG-RKG 156 (433)
T ss_dssp HHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHT---------CCEEEEETTCCCCSSHHHHHTCCSSC-CSS
T ss_pred HHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhC---------CCeEEEECCCcCCCChhHHhhcCCcc-ccc
Confidence 8999999999986 78999999999999999998876653 67899999999999988776654332 222
Q ss_pred CCCCCCCceEee--------CC---------CHHHHHhhcCC---CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh
Q 012363 220 FEPVMPGVNFVE--------YG---------NIEATRKLIQP---GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDA 279 (465)
Q Consensus 220 ~~~~~~~~~~~~--------~~---------d~~~le~~l~~---~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~ 279 (465)
+.+...++..++ ++ |+++|+++++. +++++|++||+++++|.++++++++++|+++|++|
T Consensus 157 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~ 236 (433)
T 1zod_A 157 VGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEAR 236 (433)
T ss_dssp SCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHH
T ss_pred cCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHh
Confidence 333334444433 23 38999998862 57899999999888898889999999999999999
Q ss_pred CCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCC--CcCCCCChHHHHHHHHH
Q 012363 280 GALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAIA 357 (465)
Q Consensus 280 g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~--~~~t~~~~~~~~~aa~a 357 (465)
|++||+||||+|||++|..++++.+++.||++||||++++|+|+|++++++++++.+.... +++|+++|+++++|+.+
T Consensus 237 ~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~s~sK~~~~G~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a 316 (433)
T 1zod_A 237 GMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLR 316 (433)
T ss_dssp TCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHTTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHH
T ss_pred CCEEEEeccccCCCcCchHhHHhhcCCCCCEEEecccccCCCCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHHH
Confidence 9999999999999999887777888999999999999999999999999999998886533 44889999999999999
Q ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC----------ChHHHHHHHHHCCceEeec
Q 012363 358 VLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV----------SATPVVDACRDSGLLVLTA 427 (465)
Q Consensus 358 ~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~----------~~~~~~~~l~~~Gv~v~~~ 427 (465)
+|+.++++++.++++++++++++.|+++...++.+..+++.|+|+++++.. ...++.+.|+++||++.++
T Consensus 317 al~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~ 396 (433)
T 1zod_A 317 VLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIV 396 (433)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEE
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEecc
Confidence 999887778899999999999999998766777777788899999998731 2567899999999999887
Q ss_pred CC-C--CEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012363 428 GK-G--NVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 428 ~~-~--~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
+. + +++||++++.+|++++++++++|+++++++
T Consensus 397 ~~~~~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~~ 432 (433)
T 1zod_A 397 QLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA 432 (433)
T ss_dssp CCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHHh
Confidence 53 3 789999999999999999999999998764
No 28
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=100.00 E-value=4.4e-56 Score=452.99 Aligned_cols=393 Identities=27% Similarity=0.405 Sum_probs=325.8
Q ss_pred hHHHHHHHHhcc-ccccCCCceEEEeeeccEEEe-CCCCEEEecccCcccccCCCCCHHHH-H-HHHH---HHhhccccc
Q 012363 62 NKEVMEAEKKLL-VGTYNRAPVVLASGKGCKLYD-AEGREYLDLSSGIAVNALGHGDADWI-K-AVVD---QANVLTHVS 134 (465)
Q Consensus 62 ~~~~~~~~~~~~-~~~~~~~p~~~~~~~G~~~~d-~dG~~ylD~~~~~~~~~lGh~~p~v~-~-a~~~---~~~~~~~~~ 134 (465)
.+.+++...++. ...| +.++.+++++|+++|| .||++||||++++++++|||+||+|+ + |+.+ ++++..+.+
T Consensus 17 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~d~~~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~~~ 95 (449)
T 2cjg_A 17 PDRVHEVLGRSMLVDGL-DIVLDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSN 95 (449)
T ss_dssp GGGHHHHHHTTSCCCSC-SSCBCTTTCBBTEEEBTTTCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHHHhhcccCC-CeeEEEeeeeeCEEEECCCCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 344555555554 3233 4444456999999999 99999999999999999999999999 9 9999 887765443
Q ss_pred CCCCCHHHHHHHHHHHhhcC---CCeEEecCCHHHHHHHHHHHHHHHhhhc---CCCCCCCCceEEEEcCCcccCccccc
Q 012363 135 NMYYSIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHS---NPDSKEPATEFVSFTNSFHGRTMGAL 208 (465)
Q Consensus 135 ~~~~~~~~~~la~~l~~~~~---~~~v~~~~sG~eA~~~al~~a~~~t~~~---~~~~~~~~~~ii~~~~~yhg~~~~~~ 208 (465)
..+.++...+++++|+++++ .++|+|++||+||++.|+++++.+++.. .+.+.+++++||+++++|||++..++
T Consensus 96 ~~~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~ 175 (449)
T 2cjg_A 96 SDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTL 175 (449)
T ss_dssp TTCCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGG
T ss_pred cccCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchh
Confidence 45677778999999999873 7899999999999999999998776411 00000127899999999999999888
Q ss_pred cccCC-CCcCCCCCCCCCCceEeeCCC--HHH-------------HHhhcC--CCCeEEEEEcccCCCCCcccCCHHHHH
Q 012363 209 ALTSK-EHYRSPFEPVMPGVNFVEYGN--IEA-------------TRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQ 270 (465)
Q Consensus 209 ~~~~~-~~~~~~~~~~~~~~~~~~~~d--~~~-------------le~~l~--~~~~a~vi~ep~~~~~G~~~~~~~~l~ 270 (465)
.+++. +.+...+.+..+++.++|++| .+. |+++++ .+++++|++||+++++|.+++++++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~ 255 (449)
T 2cjg_A 176 SLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFA 255 (449)
T ss_dssp GTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHH
T ss_pred hhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHH
Confidence 87764 333334556666777788877 433 888885 357899999999999998899999999
Q ss_pred HHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhc-----cCCCCcCCC
Q 012363 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAI-----NYGDHGSTF 345 (465)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~-----~~~~~~~t~ 345 (465)
+|+++|++||++||+||||+|||++|..++++.+++.||++||||++ |+|++++++++++.+ .+..+++|+
T Consensus 256 ~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l----~iG~~~~~~~~~~~l~~~~~~~~~~~~t~ 331 (449)
T 2cjg_A 256 AMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKT----QVCGVMAGRRVDEVADNVFAVPSRLNSTW 331 (449)
T ss_dssp HHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGG----SSEEEEECGGGGGSTTCTTTSTTSSCCSS
T ss_pred HHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEEEecCcc----cEEEEEECHHHhhhhhhcccCCcccccCC
Confidence 99999999999999999999999999877788889999999999998 899999999998863 334577899
Q ss_pred CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCC-ceeeeccceEEEEEecC--ChHHHHHHHHHCCc
Q 012363 346 AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPH-VKDVRGLGLIIGIEFDV--SATPVVDACRDSGL 422 (465)
Q Consensus 346 ~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~g~~~~i~~~~--~~~~~~~~l~~~Gv 422 (465)
++|+++++|+.++|+.+.++++.++++++++++++.|+++...++. +..+++.|+|+++++.. ...++.+.|+++||
T Consensus 332 ~~n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~Gv 411 (449)
T 2cjg_A 332 GGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLPTTADRDELIRQLWQRAV 411 (449)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEEEEECSSHHHHHHHHHHHHHTTE
T ss_pred CCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEEEEEECChHHHHHHHHHHHHCCe
Confidence 9999999999999998876788999999999999999987667775 77788999999998842 35679999999999
Q ss_pred eEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012363 423 LVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 423 ~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
++.+++. +++||+|++.+|++++++++++|+++++++
T Consensus 412 ~v~~~g~-~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 412 IVLPAGA-DTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp ECEEETT-TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999865 899999999999999999999999998764
No 29
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=100.00 E-value=1.5e-54 Score=435.76 Aligned_cols=388 Identities=41% Similarity=0.717 Sum_probs=341.9
Q ss_pred hccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHH
Q 012363 71 KLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLV 150 (465)
Q Consensus 71 ~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~ 150 (465)
++..+.|.+.|+++++++|+++||.+|++||||.++.+++++||+||++.+++.+++.+..+....++.+...+++++|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la 91 (406)
T 4adb_A 12 EWMIPVYAPAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLI 91 (406)
T ss_dssp HHBCSSCCCCSSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSCCHHHHHHHHHHH
T ss_pred HHhhhhcCCCCceEEeeccCEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhcccccCCcCCHHHHHHHHHHH
Confidence 45666778889999999999999999999999999999999999999999999999987555445567788999999999
Q ss_pred hhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEe
Q 012363 151 ACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV 230 (465)
Q Consensus 151 ~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (465)
++++.++|++++||++|++.++++++.+....+.. ++++||+++|+||++...+...++.+.+...+.+...++..+
T Consensus 92 ~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~---g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (406)
T 4adb_A 92 DATFADRVFFCNSGAEANEAALKLARKFAHDRYGS---HKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHA 168 (406)
T ss_dssp HHSSCSEEEEESSHHHHHHHHHHHHHHHHHHHTCT---TCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEE
T ss_pred hhCCCCeEEEeCcHHHHHHHHHHHHHHHHHhcCCC---CCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEe
Confidence 99998899999999999999999887652211111 368999999999999988888877666655566666788889
Q ss_pred eCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccE
Q 012363 231 EYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDI 310 (465)
Q Consensus 231 ~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi 310 (465)
|++|+++|+++++ .++++|+++|+|++||+++++.+++++|+++|++||++||+||+|+||++.|..+..+.+++.||+
T Consensus 169 ~~~d~~~l~~~l~-~~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~ 247 (406)
T 4adb_A 169 AYNDINSASALID-DSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDL 247 (406)
T ss_dssp CTTCHHHHHTTCS-TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSE
T ss_pred CCCcHHHHHHHhc-CCeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCCE
Confidence 9999999999997 478999999999999998889999999999999999999999999999999987777888999999
Q ss_pred EEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCC
Q 012363 311 MTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNP 390 (465)
Q Consensus 311 ~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 390 (465)
+||||++++|+|+|++++++++++.+.+..+..+++.++++++++.++|+.++.+++.++++++.+++++.|+++...++
T Consensus 248 ~t~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 327 (406)
T 4adb_A 248 LTTAKALGGGFPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINHRYG 327 (406)
T ss_dssp EEECGGGGTTSCCEEEEECHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEechhhcCCCCeEEEEEcHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999877788899999999999999999887788899999999999999998766666
Q ss_pred CceeeeccceEEEEEecC----ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhhc
Q 012363 391 HVKDVRGLGLIIGIEFDV----SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 391 ~~~~~~~~g~~~~i~~~~----~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
.+..+++.|.++++.+.. ...++.+.|+++||.+.+++. +++|+++++.+|++++++++++|+++++++.++
T Consensus 328 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~-~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~~ 403 (406)
T 4adb_A 328 LFSEVRGLGLLIGCVLNADYAGQAKQISQEAAKAGVMVLIAGG-NVVRFAPALNVSEEEVTTGLDRFAAACEHFVSR 403 (406)
T ss_dssp CEEEEEEETTEEEEEECTTTTTCHHHHHHHHHHTTEECEESST-TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CceEEEEEEEEEEEEEeCCcHHHHHHHHHHHHHCCcEEeecCC-CeEEEECCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 677788889999999843 578899999999999998765 899999999999999999999999999887653
No 30
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=2.5e-54 Score=432.39 Aligned_cols=387 Identities=35% Similarity=0.597 Sum_probs=335.9
Q ss_pred HHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHH
Q 012363 65 VMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIE 144 (465)
Q Consensus 65 ~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~ 144 (465)
+++.+.++..+.|.+.|+++++++|+++||.||++||||.+++++.++||+||+|.+|+.+++++..+.+..++.+...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~ 82 (392)
T 3ruy_A 3 IIELTDTYGANNYHPLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRAFHSDQLGP 82 (392)
T ss_dssp HHHHHHHHBCTTCCCCSCEECEEEBTEEECTTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSEETTHHH
T ss_pred HHHHHHhhhhccCCCCCceEEeeeeCEEEeCCCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccccccCCHHHHH
Confidence 34455677778888999999999999999999999999999999999999999999999999987665544456667899
Q ss_pred HHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhh-hcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCC
Q 012363 145 LAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQR-HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV 223 (465)
Q Consensus 145 la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~-~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 223 (465)
++++|++.++.++++|++||++|++.|+++++.... ..+.. +++++||+++++|||.+..++.+++...+...+.+.
T Consensus 83 l~~~la~~~g~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~--~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (392)
T 3ruy_A 83 WYEKVAKLTNKEMVLPMNTGAEAVETAIKTARRWAYDVKKVE--ANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPM 160 (392)
T ss_dssp HHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCC--TTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSC
T ss_pred HHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHHhhhhccCCC--CCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCC
Confidence 999999999999999999999999999998876510 00000 136799999999999999888877766666666677
Q ss_pred CCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccc
Q 012363 224 MPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEH 303 (465)
Q Consensus 224 ~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~ 303 (465)
.+++..++++|+++|+++++ .++++|+++|+++++|.+.++++++++|+++|++||++||+||+|++|+++|..+..+.
T Consensus 161 ~~~~~~~~~~d~~~l~~~l~-~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~ 239 (392)
T 3ruy_A 161 LPGIIVIPYGDLEALKAAIT-PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDW 239 (392)
T ss_dssp CSSEEEECTTCHHHHHHHCC-TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGG
T ss_pred CCCCeeeCcccHHHHHHHhc-cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhc
Confidence 77788889999999999997 47899999999999999988999999999999999999999999999999998777888
Q ss_pred cCCcccEEEecccCCCc-cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Q 012363 304 YGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETL 382 (465)
Q Consensus 304 ~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l 382 (465)
+++.||++||||+++|| +|+|++++++++++.+.+..+..+++.|+++++++.++|+.+..+++.++++++.+++++.|
T Consensus 240 ~~~~~d~~~~SK~l~gG~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L 319 (392)
T 3ruy_A 240 DNVTPDMYILGKALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQL 319 (392)
T ss_dssp GTCCCSEEEECGGGGTTTSCCEEEEECHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEchhhhCChhhhEEEEECHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 89999999999999999 99999999999999998777888999999999999999998766778888888888888877
Q ss_pred HHHHHcCCCceeeeccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012363 383 KQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 383 ~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
+++ ..+.+..+++.|.++++.++.+..++.+.|+++||.+.+++. +++|+++++.+|++++++++++|++++
T Consensus 320 ~~~--~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~-~~iRi~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 320 KEI--DNPMITEVRGKGLFIGIELNEPARPYCEQLKAAGLLCKETHE-NVIRIAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp TTC--CCTTEEEEEEETTEEEEEESSCSHHHHHHHHTTTEECCCBTT-TEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHh--cCCCceEEEeeeeEEEEEEcchHHHHHHHHHHCCcEEecCCC-CEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 654 235566778889999998855778899999999999998765 899999999999999999999999876
No 31
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=100.00 E-value=7.3e-55 Score=444.79 Aligned_cols=391 Identities=21% Similarity=0.283 Sum_probs=308.3
Q ss_pred hccccccchhhhccCCCCCCcchHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHH
Q 012363 40 AASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119 (465)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v 119 (465)
..|.++ ++++.+++|+|+++..+. |.+.|+++++++|+++||.||++||||.++.++.++||+||+|
T Consensus 12 ~~~~~~-~~~~~~~~~~~~~~~~~~------------~~~~p~~~~~~~G~~~~d~~g~~~iD~~~~~~~~~lg~~~~~v 78 (453)
T 2cy8_A 12 EGSVFW-AQRARSVMPDGVTADTRA------------FDPHGLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRV 78 (453)
T ss_dssp HHHHHH-HHHHHHHSCCC------C------------CSSCCCCEEEEEBTEEEETTCCEEEESCTTTTSCTTCBTCHHH
T ss_pred chhHHH-HHHHHhhcCCCCCccccc------------cCCCCceEEEeecCEEEECCCCEEEECcccHhhcccCCCCHHH
Confidence 355667 888889999887665542 2357999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhc-CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcC
Q 012363 120 IKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN 198 (465)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~-~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~ 198 (465)
++|+.+++++..+ ..++.+.+.++++++++.+ +.++|+|++||+||++.|+++++.+++ +++||+++|
T Consensus 79 ~~a~~~~~~~~~~--~~~~~~~~~~la~~l~~~~~~~~~v~~~~gg~eA~~~al~~ar~~~~---------~~~vi~~~~ 147 (453)
T 2cy8_A 79 NAAIAEALSHGVQ--YAASHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFTG---------RRMILRFEG 147 (453)
T ss_dssp HHHHHHHHTTTCS--SCSSCHHHHHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHHHHHC---------CCEEEEECC
T ss_pred HHHHHHHHHhCCC--CCCCCHHHHHHHHHHHhhCCCCCEEEEeCCHHHHHHHHHHHHHHhhC---------CCEEEEEcC
Confidence 9999999987432 2467788999999999988 488999999999999999999887764 678999999
Q ss_pred CcccCccccccccCC----CCcCCCCC-CCCCCceEeeCCCHHHHHhhcCC--CCeEEEEEcccCCCCCcccCCHHHHHH
Q 012363 199 SFHGRTMGALALTSK----EHYRSPFE-PVMPGVNFVEYGNIEATRKLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQF 271 (465)
Q Consensus 199 ~yhg~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~d~~~le~~l~~--~~~a~vi~ep~~~~~G~~~~~~~~l~~ 271 (465)
+|||++..++...+. +... ... .....+..+|++|+++|+++++. .++++|++||+++++|.++++++++++
T Consensus 148 ~yhg~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~ 226 (453)
T 2cy8_A 148 HYHGWHDFSASGYNSHFDGQPAP-GVLPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLRE 226 (453)
T ss_dssp -----------------------------CGGGEEEECTTCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHH
T ss_pred CcCCCchhhHhhcCCccCCCcCC-CCCccccCceeecCCCCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHH
Confidence 999998876654322 1100 000 01124556788899999999972 478999999998888888889999999
Q ss_pred HHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccC---C--CCcCCCC
Q 012363 272 LRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY---G--DHGSTFA 346 (465)
Q Consensus 272 l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~---~--~~~~t~~ 346 (465)
|+++|++||++||+||+|+|| ++|..++++.+++.||++|+||++++|+|+|++++++++++.+.. . .+.+||+
T Consensus 227 l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~ 305 (453)
T 2cy8_A 227 GAELARQYGALFILDEVISGF-RVGNHGMQALLDVQPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFT 305 (453)
T ss_dssp HHHHHHHTTCEEEEECTTTTT-TTCTTHHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTSSSCC---------CC
T ss_pred HHHHHHHcCCEEEEecCcccc-ccCchhhhHHhCCCCcEEEEChhhhCCcceEEEechHHHHHHhccccCCCceeCCCCC
Confidence 999999999999999999999 888777777889999999999999999999999999999998875 1 3567899
Q ss_pred ChHHHHHHHHHHHHH-hcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC-----C-----------
Q 012363 347 GSPLVCNAAIAVLDK-ISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV-----S----------- 409 (465)
Q Consensus 347 ~~~~~~~aa~a~L~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~-----~----------- 409 (465)
+||++++++.++|+. + .+++.++++++++++++.|+++...++....+++.|+++++++.. .
T Consensus 306 ~n~~~~aa~~aal~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~ 384 (453)
T 2cy8_A 306 GNPITAAAAIAAIDTIL-EDDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVAR 384 (453)
T ss_dssp CCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCC
T ss_pred CCHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEecccccccccccccccccc
Confidence 999999999999998 7 678899999999999999998876677666678899999999853 1
Q ss_pred -----hHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012363 410 -----ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 410 -----~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
..++.+.|+++||++.+. + |+++++.++++++++++++|+++++++.+
T Consensus 385 ~~~~~~~~l~~~l~~~Gv~v~~~---~--~~~l~~~~t~~~i~~~l~~l~~~l~~~~~ 437 (453)
T 2cy8_A 385 PDVKMIAAMRMALILEGVDIGGR---G--SVFLSAQHEREHVEHLVTTFDRVLDRLAD 437 (453)
T ss_dssp CCHHHHHHHHHHHHHTTEECBTT---T--EEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCCeEEeCC---C--CEEeeccCCHHHHHHHHHHHHHHHHHHHh
Confidence 357889999999999643 2 34567999999999999999999987754
No 32
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=100.00 E-value=6.2e-55 Score=446.69 Aligned_cols=392 Identities=26% Similarity=0.361 Sum_probs=306.4
Q ss_pred chHHHHHHHHhccccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhc--ccccCCC-
Q 012363 61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL--THVSNMY- 137 (465)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~--~~~~~~~- 137 (465)
..+++.++..++......+.|..+++++|+++||.||++||||++++++.+|||+||+|++|+.+++... .+.+..+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~ 105 (472)
T 1ohv_A 26 RSRELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGI 105 (472)
T ss_dssp HHHHHHHHHHHHSCCTTCCCCBCGGGCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTT
T ss_pred cHHHHHHHHHhhhccccccCCceEEEEEcCEEEeCCCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhccccccccccc
Confidence 3455555555554333345677889999999999999999999999999999999999999999987542 2221111
Q ss_pred --CCHHHHHHHHHHHhhc--CCCeEEecCCHHHHHHHHHHHHHHHhhh--cC---------------CCCCCCCceEEEE
Q 012363 138 --YSIPQIELAKRLVACS--FADRVFFSNTGTEANEAAIKFARKFQRH--SN---------------PDSKEPATEFVSF 196 (465)
Q Consensus 138 --~~~~~~~la~~l~~~~--~~~~v~~~~sG~eA~~~al~~a~~~t~~--~~---------------~~~~~~~~~ii~~ 196 (465)
..+..++++++|++.. +.++|+|++||+|||+.|+++++.++.. ++ ..+..++++||++
T Consensus 106 ~~~~~l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~ 185 (472)
T 1ohv_A 106 LPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSF 185 (472)
T ss_dssp SCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEE
T ss_pred ccHHHHHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEE
Confidence 2344666777777766 3789999999999999999999876420 00 0000014899999
Q ss_pred cCCcccCccccccccCCCCcCCCCCCCCCCceE-------------eeCC------CHHHHHhhcCC-----CCeEEEEE
Q 012363 197 TNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF-------------VEYG------NIEATRKLIQP-----GKTAAVFV 252 (465)
Q Consensus 197 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~------d~~~le~~l~~-----~~~a~vi~ 252 (465)
+++|||++.+++++++...+.....+. .++.+ .+++ |+++|+++|++ .++++|++
T Consensus 186 ~~~yHg~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~viv 264 (472)
T 1ohv_A 186 MGAFHGRTMGCLATTHSKAIHKIDIPS-FDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIV 264 (472)
T ss_dssp TTCCCCSSHHHHHHCCSCHHHHTTSCC-CCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCcccccHHHHhcCCCccccccCCCC-CCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 999999999998877643221000010 00000 0122 68899999863 16899999
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCc--ccEEEeccc-CCCccceeeEEeC
Q 012363 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIF--PDIMTLAKP-LAGGLPIGAALVT 329 (465)
Q Consensus 253 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~--pdi~t~sK~-lg~G~~iG~v~~~ 329 (465)
||+++++|.++++++|+++|+++|++||++||+||||+|||++|.+++++.+++. ||++||||+ ++||++ + +
T Consensus 265 e~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~sK~~l~GG~~----~-~ 339 (472)
T 1ohv_A 265 EPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFF----H-K 339 (472)
T ss_dssp CSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEEEECGGGSSEEEE----E-C
T ss_pred cCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEEEEccccccCCcc----C-c
Confidence 9999999999999999999999999999999999999999999987788888986 999999999 676543 3 6
Q ss_pred HHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCC-CceeeeccceEEEEEecC
Q 012363 330 EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNP-HVKDVRGLGLIIGIEFDV 408 (465)
Q Consensus 330 ~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~g~~~~i~~~~ 408 (465)
+++ ..+.+..+.+|+++||++++|+.++|+.+.++++.++++++++++++.|+++..++| .+..+++.|+|+++++..
T Consensus 340 ~~~-~~~~~~~~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~~~~~~~~~ 418 (472)
T 1ohv_A 340 EEF-RPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPD 418 (472)
T ss_dssp GGG-SCSSSSSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEEEEECSS
T ss_pred hhh-cccccccccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCceEEEEEeCC
Confidence 665 334455678999999999999999999887778899999999999999998766677 366788899999998742
Q ss_pred --ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012363 409 --SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 409 --~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
...++++.|+++||++.+++. +++||+|++.+|++||++++++|+++++++
T Consensus 419 ~~~~~~~~~~l~~~Gv~~~~~g~-~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 471 (472)
T 1ohv_A 419 ESIRNKLISIARNKGVMLGGCGD-KSIRFRPTLVFRDHHAHLFLNIFSDILADF 471 (472)
T ss_dssp HHHHHHHHHHHHHTTEECEEETT-TEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHCCeEEecCCC-CEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 356799999999999998764 799999999999999999999999998764
No 33
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=100.00 E-value=2.6e-54 Score=440.22 Aligned_cols=375 Identities=27% Similarity=0.466 Sum_probs=314.5
Q ss_pred CceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHHhhcC--CC
Q 012363 80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF--AD 156 (465)
Q Consensus 80 ~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~~~--~~ 156 (465)
.|+++++++|+++||.||++||||.++.+++++||+||+|++|+.+++++...... .+..+...+++++|+++++ .+
T Consensus 32 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~ 111 (449)
T 3a8u_X 32 DPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYGHPLSFQLAEKITDLTPGNLN 111 (449)
T ss_dssp SCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCSCCCSSSCCCHHHHHHHHHHHTTSSTTEE
T ss_pred CCceEEeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 58899999999999999999999999999999999999999999999987531112 4667778999999999984 78
Q ss_pred eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC---
Q 012363 157 RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG--- 233 (465)
Q Consensus 157 ~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 233 (465)
+|+|++||+||++.|+++++.++..++.+ ++++||+++|+|||++..++..++.+.++..+.+...++..++.+
T Consensus 112 ~v~~~~ggsea~~~al~~~~~~~~~~g~~---~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~ 188 (449)
T 3a8u_X 112 HVFFTDSGSECALTAVKMVRAYWRLKGQA---TKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLA 188 (449)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTCT---TCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCG
T ss_pred EEEEcCcHHHHHHHHHHHHHHHHHhcCCC---CCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccc
Confidence 99999999999999999998876433321 478999999999999987776655433333333333444433321
Q ss_pred -------C--------HHHHHhhcCC---CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCC
Q 012363 234 -------N--------IEATRKLIQP---GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT 295 (465)
Q Consensus 234 -------d--------~~~le~~l~~---~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~ 295 (465)
| +++|+++++. +++++|++||+++++|.++++++++++|+++|++||++||+||||++||++
T Consensus 189 ~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~ 268 (449)
T 3a8u_X 189 SNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRT 268 (449)
T ss_dssp GGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred cCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc
Confidence 5 8999999862 478999999999888988899999999999999999999999999999999
Q ss_pred CccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccCC---------CCcCCCCChHHHHHHHHHHHHHhcCc
Q 012363 296 GYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG---------DHGSTFAGSPLVCNAAIAVLDKISNP 365 (465)
Q Consensus 296 g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~---------~~~~t~~~~~~~~~aa~a~L~~~~~~ 365 (465)
|..+..+.+++.||++|+||++++| +|+|++++++++++.+... .+..|+++|+++++++.++|+.++++
T Consensus 269 g~~~~~~~~~~~~di~s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~ 348 (449)
T 3a8u_X 269 GSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKE 348 (449)
T ss_dssp SSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHT
T ss_pred CcchhhhhcCCCCCEEEEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhc
Confidence 8877778889999999999999988 9999999999999888653 35678999999999999999988767
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCC-------hHHHHHHHHHCCceEeecCCCCEEEEecC
Q 012363 366 AFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVS-------ATPVVDACRDSGLLVLTAGKGNVVRLVPP 438 (465)
Q Consensus 366 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~-------~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~ 438 (465)
++.++++++++++++.|++ +..++.+..+++.|+++++++... ..++.+.|+++||++.+++ +++||+|+
T Consensus 349 ~~~~~~~~~~~~l~~~L~~-l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g--~~iRis~~ 425 (449)
T 3a8u_X 349 NLVQSVAEVAPHFEKALHG-IKGAKNVIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRFGG--DTLQFGPT 425 (449)
T ss_dssp THHHHHHHHHHHHHHHHHT-TTTSTTEEEEEEETTEEEEEECCBTTBSSHHHHHHHHHHHHHTEECEEET--TEEEECCC
T ss_pred CHHHHHHHHHHHHHHHHHH-HhcCCCeEEEeeeEEEEEEEEecCcccccccHHHHHHHHHHCCcEEecCC--CEEEEECC
Confidence 8899999999999999977 345666666788899999998421 1268999999999999875 78999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHh
Q 012363 439 LIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 439 ~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
+.+|++++++++++|+++++++
T Consensus 426 ~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 426 FNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998764
No 34
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.2e-54 Score=434.07 Aligned_cols=377 Identities=41% Similarity=0.702 Sum_probs=310.0
Q ss_pred hHHHHHHHHhc-cccccCC--CceEEEeeeccEEEeCCCCEEEecccCcccccCCCC-CHHHHHHHHHHHhhcccc-cCC
Q 012363 62 NKEVMEAEKKL-LVGTYNR--APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHG-DADWIKAVVDQANVLTHV-SNM 136 (465)
Q Consensus 62 ~~~~~~~~~~~-~~~~~~~--~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~-~p~v~~a~~~~~~~~~~~-~~~ 136 (465)
.++++++..++ ..+.|.+ .|+++.+++|+++||.||++||||.++.+++++||+ ||+|++|+.+++++..+. ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~~~~~ 82 (419)
T 2eo5_A 3 SRKIIEESDIYLATSTRDPELFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAAND 82 (419)
T ss_dssp HHHHHHHHHHHSCCCCCSSCCCCCCEEEEEBTEEEETTSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCCSCSC
T ss_pred hHHHHHHHHhhhccccccccCCCceEEeeecCEEEECCCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCccccccc
Confidence 45566666666 6667766 799999999999999999999999999999999998 999999999999875432 234
Q ss_pred CCCHHHHHHHHHHHhhcC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012363 137 YYSIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 137 ~~~~~~~~la~~l~~~~~---~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
++++...+++++|+++++ .++|+|++||+||++.|+++++.++ +++||+++|+|||++..++.+++.
T Consensus 83 ~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~~----------~~~vi~~~p~yh~~~~~~~~~~~~ 152 (419)
T 2eo5_A 83 FYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTG----------RKYIIAFLGGFHGRTFGSISLTAS 152 (419)
T ss_dssp SCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTTS----------CCEEEEETTCCCCSSHHHHHHCCS
T ss_pred cCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHhh----------CCcEEEECCCcCCCCHhhHhhcCC
Confidence 677778999999999987 4699999999999999999887432 678999999999999888776654
Q ss_pred C-CcCCCCCCCCCCceEeeCC---------------------CHHHHH-hhcCC----CCeEEEEEcccCCCCCcccCCH
Q 012363 214 E-HYRSPFEPVMPGVNFVEYG---------------------NIEATR-KLIQP----GKTAAVFVEPIQGEGGIYSATK 266 (465)
Q Consensus 214 ~-~~~~~~~~~~~~~~~~~~~---------------------d~~~le-~~l~~----~~~a~vi~ep~~~~~G~~~~~~ 266 (465)
. .+...+.+...++..+|++ |+++|+ ++++. +++++|++||+++++|.+++++
T Consensus 153 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~ 232 (419)
T 2eo5_A 153 KAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPK 232 (419)
T ss_dssp CGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCT
T ss_pred ccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCH
Confidence 3 3333333444456666554 367888 88762 4689999999998889888999
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccCCCCcCCC
Q 012363 267 EFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTF 345 (465)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~~~~~t~ 345 (465)
+++++|+++|++||++||+||+|++||++|..++.+.+++.||++||||++++| +|+||++++++++ .+ ...+.+|+
T Consensus 233 ~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~~G~~riG~~~~~~~~~-~~-~~~~~~t~ 310 (419)
T 2eo5_A 233 NFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDLD-FK-PGMHSNTF 310 (419)
T ss_dssp THHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTTSCCEEEEEEGGGC-CC-------CC
T ss_pred HHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEEEecccccCCccceEEEEEchHhh-cC-CcccCCCC
Confidence 999999999999999999999999999998766777788999999999999999 9999999999988 77 44677899
Q ss_pred CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec---CChHHHHHHHHHCCc
Q 012363 346 AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD---VSATPVVDACRDSGL 422 (465)
Q Consensus 346 ~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~---~~~~~~~~~l~~~Gv 422 (465)
++|+++++|+.++|+.+++ +.++++++++++++.|.++ +..+++.|+|+++++. .... +.+.|+++||
T Consensus 311 ~~n~~~~~aa~aal~~~~~--~~~~~~~~~~~l~~~L~~~------~~~~~~~g~~~~i~~~~~~~~~~-~~~~l~~~Gv 381 (419)
T 2eo5_A 311 GGNALACAIGSKVIDIVKD--LLPHVNEIGKIFAEELQGL------ADDVRGIGLAWGLEYNEKKVRDR-IIGESFKRGL 381 (419)
T ss_dssp CCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTS------SSEEEEETTEEEEECSCHHHHHH-HHHHHHHTTE
T ss_pred CCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh------hhheEeeeEEEEEEEecCccHHH-HHHHHHHCCC
Confidence 9999999999999997643 7788888888887777543 3456788999999883 2245 8889999999
Q ss_pred eEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012363 423 LVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 423 ~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
++.+++. +++||+|++.+|++++++++++|+++++++
T Consensus 382 ~v~~~~~-~~lRis~~~~~t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 382 LLLPAGR-SAIRVIPPLVISEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp ECEEETT-TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EEecCCC-CEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999764 789999999999999999999999998764
No 35
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=100.00 E-value=1.7e-52 Score=424.27 Aligned_cols=384 Identities=31% Similarity=0.508 Sum_probs=313.3
Q ss_pred hccccccC----CCceE-EEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccc-cCCCCCHHHHH
Q 012363 71 KLLVGTYN----RAPVV-LASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV-SNMYYSIPQIE 144 (465)
Q Consensus 71 ~~~~~~~~----~~p~~-~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~-~~~~~~~~~~~ 144 (465)
++.++++. +.|++ +++++|+++||.||++||||.++.+++++||+||+|++|+.+++++..+. ...++++...+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 90 (429)
T 1s0a_A 11 RHILHPFTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIE 90 (429)
T ss_dssp HHBCCTTCCSSSCCCCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEECHHHHH
T ss_pred HhhccccccccccCCceeEEeeeeeEEEeCCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccccccccCCHHHHH
Confidence 44455443 34665 89999999999999999999999999999999999999999999875432 22456677889
Q ss_pred HHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCC-cCCCCC
Q 012363 145 LAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH-YRSPFE 221 (465)
Q Consensus 145 la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~-~~~~~~ 221 (465)
++++|+++++ .++|+|++||+||++.++++++.+++..+. ++++||+++|+||++...++.+++... +...+.
T Consensus 91 l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~----~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~ 166 (429)
T 1s0a_A 91 LCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGE----ARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWK 166 (429)
T ss_dssp HHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTC----CCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGT
T ss_pred HHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhcccCC----CCCeEEEECCCCCCCchhhhhhcCCchhhccccc
Confidence 9999999985 889999999999999999988766532111 378999999999999877766554221 111222
Q ss_pred CCCCCceEee-----------CCCHHHHHhhcCC--CCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCEEEEec
Q 012363 222 PVMPGVNFVE-----------YGNIEATRKLIQP--GKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDE 287 (465)
Q Consensus 222 ~~~~~~~~~~-----------~~d~~~le~~l~~--~~~a~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DE 287 (465)
+..+++..++ ..|+++|+++++. .++++|+++|+ ++++|.++++++++++|+++|++||++||+||
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De 246 (429)
T 1s0a_A 167 GYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADE 246 (429)
T ss_dssp TTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEee
Confidence 2223333322 2478999998862 47899999999 88889888999999999999999999999999
Q ss_pred cccCCCCCCccccccccCCcccEEEecccCCCc-cceeeEEeCHHHHhhccCC-----CCcCCCCChHHHHHHHHHHHHH
Q 012363 288 VQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG-----DHGSTFAGSPLVCNAAIAVLDK 361 (465)
Q Consensus 288 v~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~-----~~~~t~~~~~~~~~aa~a~L~~ 361 (465)
+|+|||++|..++++.+++.||++||||++++| +|+|++++++++++.+... .+.+|+++|+++++|+.++|+.
T Consensus 247 ~~~~~g~~g~~~~~~~~~~~~d~~t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~ 326 (429)
T 1s0a_A 247 IATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAI 326 (429)
T ss_dssp TTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHH
T ss_pred hhhCCcccchHHHhhhcCCCCCEEEecccccCCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHH
Confidence 999999988766777788899999999999999 9999999999998888653 2567899999999999999998
Q ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec--CChHHHHHHHHHCCceEeecCCCCEEEEecCC
Q 012363 362 ISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGKGNVVRLVPPL 439 (465)
Q Consensus 362 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~ 439 (465)
+.++++.++++++++++++.|+++. .++.+..+++.|+++++++. .+..++.+.|+++||++.+.+ +++||++++
T Consensus 327 ~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~--~~iRis~~~ 403 (429)
T 1s0a_A 327 LESGDWQQQVADIEVQLREQLAPAR-DAEMVADVRVLGAIGVVETTHPVNMAALQKFFVEQGVWIRPFG--KLIYLMPPY 403 (429)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHGGGG-GCTTEEEEEEETTEEEEEESSCBCHHHHHHHHHHTTEECCCBT--TEEEECCCT
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHh-cCCCEEEEEEeeEEEEEEECCcccHHHHHHHHHHCCCEEeccC--CEEEEECCC
Confidence 8777888999999999998887653 35656567788999999884 357789999999999998864 789999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHhh
Q 012363 440 IISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 440 ~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
.+|++++++++++|+++++++.
T Consensus 404 ~~t~e~i~~~~~~l~~~~~~~~ 425 (429)
T 1s0a_A 404 IILPQQLQRLTAAVNRAVQDET 425 (429)
T ss_dssp TCCHHHHHHHHHHHHHHTSSGG
T ss_pred CCCHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999876543
No 36
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=100.00 E-value=9.9e-52 Score=418.03 Aligned_cols=391 Identities=34% Similarity=0.581 Sum_probs=322.8
Q ss_pred HHHHHHHHhccccccCC-CceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCCCH
Q 012363 63 KEVMEAEKKLLVGTYNR-APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYYSI 140 (465)
Q Consensus 63 ~~~~~~~~~~~~~~~~~-~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~-~~~~~~ 140 (465)
+++.++..++.++.+.. .|+++++++|+++||.+|++||||.++.++.++||+||+|++++.+++++..+.. ..++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~ 84 (426)
T 1sff_A 5 KELMQRRSQAIPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYE 84 (426)
T ss_dssp HHHHHHHHHHSCTTBCCSEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTTEECH
T ss_pred HHHHHHHHHhcCccccccCCceEEecccCEEEeCCCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCCCccccccCCH
Confidence 44555555666665554 5889999999999999999999999999888999999999999999987654322 345667
Q ss_pred HHHHHHHHHHhhc-C-C-CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCC-Cc
Q 012363 141 PQIELAKRLVACS-F-A-DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE-HY 216 (465)
Q Consensus 141 ~~~~la~~l~~~~-~-~-~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~-~~ 216 (465)
...+|+++|++++ + . ++|++++||++|++.++++++.+++ +++||+++|+||++....+...+.. .+
T Consensus 85 ~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~~---------~~~vi~~~p~y~~~~~~~~~~~g~~~~~ 155 (426)
T 1sff_A 85 PYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATK---------RSGTIAFSGAYHGRTHYTLALTGKVNPY 155 (426)
T ss_dssp HHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHT---------CCEEEEETTCCCCSSHHHHHHSSCCTTT
T ss_pred HHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhhC---------CCeEEEECCCcCCCchHhhhhcCCcccc
Confidence 7889999999998 5 4 8999999999999999997766654 3489999999999987666554332 22
Q ss_pred CCCCCCCCCCceEeeCC----------CHHHHHhhcCC----CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCE
Q 012363 217 RSPFEPVMPGVNFVEYG----------NIEATRKLIQP----GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGAL 282 (465)
Q Consensus 217 ~~~~~~~~~~~~~~~~~----------d~~~le~~l~~----~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~l 282 (465)
+..+.+...++..+|.+ |+++|+++++. .++++|+++|+++++|.+.++++++++|.++|++||++
T Consensus 156 ~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~ 235 (426)
T 1sff_A 156 SAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIM 235 (426)
T ss_dssp TTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCE
T ss_pred ccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 22333333445445542 68899988862 46889999999888887889999999999999999999
Q ss_pred EEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHh
Q 012363 283 LVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKI 362 (465)
Q Consensus 283 lI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~ 362 (465)
||+||+|+||++.|..+.++.+++.||+++|||++++|+|+||+++++++++.+....+..+++.|+++++++.++|+.+
T Consensus 236 li~De~~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~GlriG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~ 315 (426)
T 1sff_A 236 LIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVF 315 (426)
T ss_dssp EEEECTTTTTTTTSSSSGGGGTTSCCSEEEECGGGGTSSCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHH
T ss_pred EEEechhhccCcccchhhhhhcCCCCCEEEEcccccCCCceEEEEEcHHHHhhhccCCcCcCCCCCHHHHHHHHHHHHHH
Confidence 99999999999888766677788889999999999999999999999999998876567788999999999999999988
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC----------ChHHHHHHHHHCCceEeecCC-CC
Q 012363 363 SNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV----------SATPVVDACRDSGLLVLTAGK-GN 431 (465)
Q Consensus 363 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~----------~~~~~~~~l~~~Gv~v~~~~~-~~ 431 (465)
.++++.++++++++++++.|+++...++.+..+++.|.++++++.. ...++.+.|+++||++.++.. ++
T Consensus 316 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~ 395 (426)
T 1sff_A 316 EQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYN 395 (426)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSC
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCCCCC
Confidence 6678899999999999999988765577666667789999999831 246788999999999998763 47
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012363 432 VVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 432 ~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
++||++++.++++++++++++|++++++++|
T Consensus 396 ~iRi~~~~~~~~~~i~~~~~~l~~~l~~~~~ 426 (426)
T 1sff_A 396 VLRILVPLTIEDAQIRQGLEIISQCFDEAKQ 426 (426)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEEECCccCCHHHHHHHHHHHHHHHHHHhC
Confidence 8999999999999999999999999987653
No 37
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=100.00 E-value=3.2e-50 Score=403.37 Aligned_cols=377 Identities=48% Similarity=0.851 Sum_probs=315.1
Q ss_pred ccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCC
Q 012363 76 TYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA 155 (465)
Q Consensus 76 ~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~ 155 (465)
.+.+.|+++.+++|+++||.+|++||||.++.+++++||++|++.+|+.+++++..+....++.+...+++++|+++++.
T Consensus 18 ~~~~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~ 97 (397)
T 2ord_A 18 TYSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNRPQMELAELLSKNTFG 97 (397)
T ss_dssp CCCCCSCEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCTTSEEHHHHHHHHHHHHTTTS
T ss_pred cccCCCceEEeeecCEEEECCCCEEEECCccccccccCCCCHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHhcCC
Confidence 45568999999999999999999999999998889999999999999999998754433334567789999999999999
Q ss_pred CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCH
Q 012363 156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNI 235 (465)
Q Consensus 156 ~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 235 (465)
++|++++||++|+..++++++.+..... +++++||+++++||+....++...+...+..++.|...++..+|++|+
T Consensus 98 ~~v~~~~gg~~a~~~al~~~~~~~~~~~----~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~ 173 (397)
T 2ord_A 98 GKVFFANTGTEANEAAIKIARKYGKKKS----EKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNV 173 (397)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHHC----TTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECTTCH
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhcCC----CCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecCCCH
Confidence 9999999999999999998875421000 025689999999999987555544333222233455566778888999
Q ss_pred HHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecc
Q 012363 236 EATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAK 315 (465)
Q Consensus 236 ~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK 315 (465)
++|++++++ ++++|+++|.++++|.++++.+++++|+++|++||++||+||+|+||++.|..+....++..||++||||
T Consensus 174 ~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~s~sK 252 (397)
T 2ord_A 174 EDLRRKMSE-DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLTTAK 252 (397)
T ss_dssp HHHHHHCCT-TEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECG
T ss_pred HHHHHHhhc-CeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCeeeecc
Confidence 999999974 6899999998888887678999999999999999999999999999988887655566777899999999
Q ss_pred cCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceee
Q 012363 316 PLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDV 395 (465)
Q Consensus 316 ~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 395 (465)
++++|+|+|+++++++++ .+....+..+++.|+++++++.++|+.+.++++.++++++.+++++.|+++...++.+..+
T Consensus 253 ~~~~G~r~G~~~~~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 331 (397)
T 2ord_A 253 GLGGGVPIGAVIVNERAN-VLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEEYDVVADV 331 (397)
T ss_dssp GGGTTSCCEEEEECSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred ccCCCcCeEEEEEchHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 999999999999998887 7765556788999999999999999988777789999999999999998865456655556
Q ss_pred eccceEEEEEecC--ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012363 396 RGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 396 ~~~g~~~~i~~~~--~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
++.|.++++.+.. ...++.+.|+++||.+.+++. +.+||++++.++++++++++++|++++++
T Consensus 332 ~~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~-~~iRis~~~~~~~e~i~~~~~~l~~~l~~ 396 (397)
T 2ord_A 332 RGMGLMIGIQFREEVSNREVATKCFENKLLVVPAGN-NTIRFLPPLTVEYGEIDLAVETLKKVLQG 396 (397)
T ss_dssp EEETTEEEEEECTTSCHHHHHHHHHHTTEECEEETT-TEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEeEEEEEEECChHHHHHHHHHHHHCCCEEccCCC-CEEEEECCcCCCHHHHHHHHHHHHHHHhh
Confidence 7789999998843 477899999999999998764 78999999999999999999999998764
No 38
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=100.00 E-value=1.4e-49 Score=398.27 Aligned_cols=380 Identities=39% Similarity=0.712 Sum_probs=313.7
Q ss_pred HHHHHHhccc---cccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHH
Q 012363 65 VMEAEKKLLV---GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIP 141 (465)
Q Consensus 65 ~~~~~~~~~~---~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~ 141 (465)
+.+.+.+|.+ ..|.+.|+++++++|+++||.+|++||||.++.+++++||.+|.+++++.+++++..+....++.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~ 88 (395)
T 1vef_A 9 WRALLEAEKTLDSGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPTPM 88 (395)
T ss_dssp CHHHHHHHHHHBCSCSCCCSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCCHH
T ss_pred HHHHHHhhhhhcccccCCCCccEEecccCEEEeCCCCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCCCccccCCHH
Confidence 3344444443 6677889999999999999999999999999988889999999999999999987544333456777
Q ss_pred HHHHHHHHHhhc--CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCC
Q 012363 142 QIELAKRLVACS--FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP 219 (465)
Q Consensus 142 ~~~la~~l~~~~--~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 219 (465)
..++++++++++ +.++|++++||++|+..++++++.++ ++++||+++++||+.........+.......
T Consensus 89 ~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~---------~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~ 159 (395)
T 1vef_A 89 RGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHT---------GRKKFVAAMRGFSGRTMGSLSVTWEPKYREP 159 (395)
T ss_dssp HHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHH---------SCCEEEEETTCCCCSSHHHHHTCCCHHHHGG
T ss_pred HHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHHh---------CCCeEEEEcCCcCCCchhhhhhcCCcccccc
Confidence 899999999999 47899999999999999999876444 4788999999999988765554433221112
Q ss_pred CCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc
Q 012363 220 FEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299 (465)
Q Consensus 220 ~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~ 299 (465)
+.|...++..++++|+++|++++++ ++++|+++|+++++|.+.++++++++|.++|++||++||+||+|+||++.|..+
T Consensus 160 ~~p~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~ 238 (395)
T 1vef_A 160 FLPLVEPVEFIPYNDVEALKRAVDE-ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRF 238 (395)
T ss_dssp GCSCSSCEEEECTTCHHHHHHHCCT-TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS
T ss_pred cCCCCCCeeEeCCCcHHHHHHHhcc-CEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchh
Confidence 2344455666777899999999974 689999999988888888899999999999999999999999999998887765
Q ss_pred cccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 012363 300 AHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFK 379 (465)
Q Consensus 300 ~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~ 379 (465)
..+..++.+|+++|||++++|+|+|++++++++++.+....+..+++.++++++++.++|+.+.++++.++++++.++++
T Consensus 239 ~~~~~~~~~d~~s~sK~~~~g~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~ 318 (395)
T 1vef_A 239 AFEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFM 318 (395)
T ss_dssp THHHHTCCCSEEEECGGGGTTSSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HhhhcCCCCCEEEEcccccCCCceEEEEehHHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 56677888999999999999999999999999988887655677888999999999999998765667888888888888
Q ss_pred HHHHHHHHcCCCceeeeccceEEEEEecCChHHHHHHHH-HCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012363 380 ETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACR-DSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 380 ~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
+.|+++ ..+.+..+++.|.++++.++....++.+.|+ ++||.+.+++. +++||++++.++++++++++++|++++
T Consensus 319 ~~l~~~--~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~-~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 319 EKLRAI--PSPKIREVRGMGLMVGLELKEKAAPYIARLEKEHRVLALQAGP-TVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp HHHHTS--CCTTEEEEEEETTEEEEEESSCSHHHHHHHHHHHCEECEESST-TEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHh--hcCceEEEEEEEEEEEEEEcChHHHHHHHHHHHCCeEEecCCC-CEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 877654 1233344567788999988545778999999 99999998754 799999999999999999999998875
No 39
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=100.00 E-value=8.1e-48 Score=382.68 Aligned_cols=369 Identities=43% Similarity=0.775 Sum_probs=306.4
Q ss_pred ccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhc
Q 012363 74 VGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS 153 (465)
Q Consensus 74 ~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~ 153 (465)
.+.+.+.|+++++++|+++||.+|+.||||.++.+++++||.+|.+.+++.+++++..+....|+.....+++++|++++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~~~~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~~ 83 (375)
T 2eh6_A 4 MNNYARLPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYENPWQEELAHKLVKHF 83 (375)
T ss_dssp CSCCCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCCTTBCCHHHHHHHHHHHHTS
T ss_pred cccCcCCCccEEeeecCEEEeCCCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHhhc
Confidence 44566789999999999999999999999999988789999999999999999876533333456667889999999999
Q ss_pred CC-CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC-ceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEee
Q 012363 154 FA-DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA-TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVE 231 (465)
Q Consensus 154 ~~-~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~-~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (465)
+. ++|++++||++|+..++++++.++.. +. ++ ++|++++|+||++...+...++...+...+.+...++..+|
T Consensus 84 g~~~~v~~~~g~t~a~~~~~~~~~~~~~~-~~----~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (375)
T 2eh6_A 84 WTEGKVFFANSGTESVEAAIKLARKYWRD-KG----KNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAK 158 (375)
T ss_dssp SSCEEEEEESSHHHHHHHHHHHHHHHHHH-TT----CCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEEC
T ss_pred CCCCeEEEeCchHHHHHHHHHHHHHHhcc-CC----CCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCC
Confidence 86 99999999999999999976555400 00 34 89999999999998777665544433323345555677788
Q ss_pred CCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE
Q 012363 232 YGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM 311 (465)
Q Consensus 232 ~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~ 311 (465)
+.|+++|++++++ ++++|+++|+++++|.+.++++++++|.++|++||++||+||+|++|++.+..+....++..+|++
T Consensus 159 ~~d~~~l~~~l~~-~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~ 237 (375)
T 2eh6_A 159 LNDIDSVYKLLDE-ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVI 237 (375)
T ss_dssp TTCHHHHHTTCCT-TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE
T ss_pred CchHHHHHHHhcC-CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEE
Confidence 8899999999974 689999999988889888899999999999999999999999999998877655566677789999
Q ss_pred EecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012363 312 TLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPH 391 (465)
Q Consensus 312 t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 391 (465)
+|||++++|+|+|++++++++++.+.+..+..+++.++++++++.++|+.+. ++.++++++.+++++.|+++ +.
T Consensus 238 s~SK~~~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~----~~ 311 (375)
T 2eh6_A 238 ALAKGLGGGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEVE--KLLPHVREVGNYFKEKLKEL----GK 311 (375)
T ss_dssp EECGGGGTTSCCEEEEEEHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHT----TS
T ss_pred EEcccccCCCCeEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH----hc
Confidence 9999999999999999999999888765567788899999999999998765 67778888888887777653 32
Q ss_pred ceeeeccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012363 392 VKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 392 ~~~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
..+++.|.+++++++.+..++++.|+++||.+.+++. +++|+++++.++++++++++++|+++
T Consensus 312 -~~~~~~g~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~-~~iRi~~~~~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 312 -GKVKGRGLMLGLELERECKDYVLKALEKGLLINCTAG-KVLRFLPPLIIQKEHIDRAISVLREI 374 (375)
T ss_dssp -SEEEEETTEEEEECSSCCHHHHHHHHHTTEECEEETT-TEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred -CCceEEEEEEEEEEcCcHHHHHHHHHHCCCEEecCCC-CEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3456778999998855577899999999999998754 78999999999999999999999875
No 40
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=100.00 E-value=5.3e-41 Score=339.07 Aligned_cols=358 Identities=11% Similarity=0.069 Sum_probs=265.0
Q ss_pred ccCCCceEEEeeeccEEEeCC--CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhc
Q 012363 76 TYNRAPVVLASGKGCKLYDAE--GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS 153 (465)
Q Consensus 76 ~~~~~p~~~~~~~G~~~~d~d--G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~ 153 (465)
.|...+++..+++|+++||.+ |++||||..+. ..+ +.+|+|++|+.+++++..+.+.....+..+++++++++.+
T Consensus 37 ~y~~~~~~~~~g~g~~~~d~~~~g~~~i~~~~~~--~~~-~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~l~~~l~~~~ 113 (421)
T 3l8a_A 37 RYDFTTRPDRLNQFTYKWKTSENNPELLQMWVAD--MDF-LPVPEIKEAIINYGREHIFGYNYFNDDLYQAVIDWERKEH 113 (421)
T ss_dssp -CCCSCCCCCTTTTBTTTGGGTTCTTCEECCSSC--CCS-CCCHHHHHHHHHHHHHCCSSCBCCCHHHHHHHHHHHHHHH
T ss_pred hccCCcccccCCCCCccccccCCCCCeeecccCC--CCC-CCCHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHh
Confidence 456667888899999999999 89999997764 233 4899999999999987444333344556788889988876
Q ss_pred C----CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCC-CCce
Q 012363 154 F----ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM-PGVN 228 (465)
Q Consensus 154 ~----~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-~~~~ 228 (465)
+ .++|+|++||+||++.+++++.. ++++|++++|+||++...+...+..... .+.. .+..
T Consensus 114 g~~~~~~~v~~~~g~~ea~~~a~~~~~~-----------~gd~Vi~~~~~y~~~~~~~~~~g~~~~~----~~~~~~~~~ 178 (421)
T 3l8a_A 114 DYAVVKEDILFIDGVVPAISIALQAFSE-----------KGDAVLINSPVYYPFARTIRLNDHRLVE----NSLQIINGR 178 (421)
T ss_dssp CCCCCGGGEEEESCHHHHHHHHHHHHSC-----------TEEEEEEEESCCHHHHHHHHHTTEEEEE----EECEEETTE
T ss_pred CCCCCHHHEEEcCCHHHHHHHHHHHhcC-----------CCCEEEECCCCcHHHHHHHHHCCCEEEe----ccccccCCC
Confidence 5 67899999999999999997641 5789999999999987655443322111 0110 0000
Q ss_pred EeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc-cc-----c
Q 012363 229 FVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AH-----E 302 (465)
Q Consensus 229 ~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~-~~-----~ 302 (465)
+. .|+++|+++++..++++|++++.++++| .+++++++++|+++|++||++||+||+|++|+++|... .+ +
T Consensus 179 ~~--~d~~~le~~i~~~~~~~vil~~p~nptG-~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~ 255 (421)
T 3l8a_A 179 FE--IDFEQLEKDIIDNNVKIYLLCSPHNPGG-RVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDAS 255 (421)
T ss_dssp EE--CCHHHHHHHHHHTTEEEEEEESSBTTTT-BCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTT
T ss_pred ee--eCHHHHHHHhhccCCeEEEECCCCCCCC-CcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCch
Confidence 00 2899999999734678888888777777 56788899999999999999999999999998877421 11 2
Q ss_pred ccCCcccEEEecccCC-CccceeeEEeC-HHHHhhccCCC-CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 012363 303 HYGIFPDIMTLAKPLA-GGLPIGAALVT-EKVASAINYGD-HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFK 379 (465)
Q Consensus 303 ~~~~~pdi~t~sK~lg-~G~~iG~v~~~-~~i~~~~~~~~-~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~ 379 (465)
..+..+++.++||+++ +|+|+|+++++ +++++.+.... ...++++|+++++++.++|+.. +++.+++.+..+.++
T Consensus 256 ~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~--~~~~~~~~~~~~~~~ 333 (421)
T 3l8a_A 256 YKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYG--KPWLEELKTVIEGNI 333 (421)
T ss_dssp GGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHH
T ss_pred hcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhcc--HHHHHHHHHHHHHHH
Confidence 2355677889999998 68999999998 89988886543 3345689999999999999853 334444444444444
Q ss_pred HHHHHHHHcCCCceeeeccceEEE-EEec---CChHHHHHHHHH-CCceEeecC-----CCCEEEEecCCCCcHHHHHHH
Q 012363 380 ETLKQKLARNPHVKDVRGLGLIIG-IEFD---VSATPVVDACRD-SGLLVLTAG-----KGNVVRLVPPLIISEQELDQA 449 (465)
Q Consensus 380 ~~l~~~~~~~~~~~~~~~~g~~~~-i~~~---~~~~~~~~~l~~-~Gv~v~~~~-----~~~~lRi~~~~~~t~e~i~~~ 449 (465)
+.|.+.++++|.+..+++.|.++. +++. .+..++.+.|++ +||++.++. ..+++||+++ +++++|+++
T Consensus 334 ~~l~~~L~~~~~i~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~i~~~ 411 (421)
T 3l8a_A 334 KLVIKELEAKTKIKVMEPEGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA--TPKNTVQEA 411 (421)
T ss_dssp HHHHHHHHHHCSCEEECCSBSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC--SCHHHHHHH
T ss_pred HHHHHHHHhCCCceEeCCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEec--CCHHHHHHH
Confidence 444444444355666677776655 7774 356789999985 599998752 1378999877 589999999
Q ss_pred HHHHHHHHH
Q 012363 450 VEILCKTLP 458 (465)
Q Consensus 450 l~~l~~~l~ 458 (465)
+++|+++++
T Consensus 412 l~~l~~~l~ 420 (421)
T 3l8a_A 412 LSRIISVFG 420 (421)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHh
Confidence 999998864
No 41
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=100.00 E-value=5.7e-38 Score=317.49 Aligned_cols=346 Identities=14% Similarity=0.054 Sum_probs=267.6
Q ss_pred CCceEEE-eeeccEEEeCCCCEEEecccCcccccCC-CCCHHHHHHHHHHHhhcccccC-----CCCCHHHHHHHHHHHh
Q 012363 79 RAPVVLA-SGKGCKLYDAEGREYLDLSSGIAVNALG-HGDADWIKAVVDQANVLTHVSN-----MYYSIPQIELAKRLVA 151 (465)
Q Consensus 79 ~~p~~~~-~~~G~~~~d~dG~~ylD~~~~~~~~~lG-h~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~la~~l~~ 151 (465)
+.+.++. +++|+++|| ||++||||.++. ++| |.||+|++++.+++.+...... .+..+...+++++|++
T Consensus 45 r~~~~~~~~~~g~~~~~-~g~~~id~~~~~---~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~ 120 (427)
T 2w8t_A 45 PFAIVMEQVKSPTEAVI-RGKDTILLGTYN---YMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRD 120 (427)
T ss_dssp TTCCCCSEEEETTEEEE-TTEEEEECSCCC---TTCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHH
T ss_pred eeeeeccccCCCceEee-CCceEEEEECcc---cccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHH
Confidence 4455677 999999999 999999999985 478 6999999999999887432111 1245668999999999
Q ss_pred hcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEee
Q 012363 152 CSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVE 231 (465)
Q Consensus 152 ~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (465)
+++.+.+++++||++|+..+++++. + +++.|++..++|.... ..+...+ ..+..+|
T Consensus 121 ~~g~~~~i~~~sGs~a~~~al~~l~---~--------~gd~vl~~~~~h~~~~-~~~~~~g------------~~~~~~~ 176 (427)
T 2w8t_A 121 FYGTTGAIVFSTGYMANLGIISTLA---G--------KGEYVILDADSHASIY-DGCQQGN------------AEIVRFR 176 (427)
T ss_dssp HHTCSEEEEESCHHHHHHHHHHHHS---C--------TTCEEEEETTCCHHHH-HHHHHSC------------SEEEEEC
T ss_pred HhCCCceEEecCcHHHHHHHHHHhc---C--------CCCEEEECCcccHHHH-HHHHHcC------------CeeEEeC
Confidence 9997888999999999999888653 2 5777888777664433 3332222 2334567
Q ss_pred CCCHHHHHhhcCCC---CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC--CCCCccccccccCC
Q 012363 232 YGNIEATRKLIQPG---KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL--GRTGYLWAHEHYGI 306 (465)
Q Consensus 232 ~~d~~~le~~l~~~---~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~--gr~g~~~~~~~~~~ 306 (465)
++|+++|+++++.. ++++|+++++++++|.+.+ +++|+++|++||++||+||+|+++ +++|.+ ..+.+++
T Consensus 177 ~~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~----l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~-~~~~~~~ 251 (427)
T 2w8t_A 177 HNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP----LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRG-VYEAQGL 251 (427)
T ss_dssp TTCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCC-HHHHTTC
T ss_pred CCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCc-hHhhcCC
Confidence 78999999999642 6899999999988898776 999999999999999999999974 333333 3445666
Q ss_pred ccc----EEEecccCCCccceeeEEeCHHHHhhccCCC--CcCCCCChHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHH
Q 012363 307 FPD----IMTLAKPLAGGLPIGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAIAVLDKISN-PAFLASVSKKGHYFK 379 (465)
Q Consensus 307 ~pd----i~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~--~~~t~~~~~~~~~aa~a~L~~~~~-~~~~~~~~~~~~~l~ 379 (465)
.+| +.||||++| .+.|++++++++++.+.... ...+++.+++.++++.++|+.+.. ++..++++++.++++
T Consensus 252 ~~~~di~~~s~sK~~g--~~gG~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~ 329 (427)
T 2w8t_A 252 EGQIDFVVGTFSKSVG--TVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALH 329 (427)
T ss_dssp TTCCSEEEEESSSTTC--SCCEEEEECCTTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CcCCcEEEecchhhhc--cCCCEEEeCHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 555 668999996 45699999999998886542 234567889999999999998765 678889999999999
Q ss_pred HHHHHHHHcCCCceeeec-cceEEEEEecC--ChHHHHHHHHHCCceEeecCC------CCEEEEecCCCCcHHHHHHHH
Q 012363 380 ETLKQKLARNPHVKDVRG-LGLIIGIEFDV--SATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQAV 450 (465)
Q Consensus 380 ~~l~~~~~~~~~~~~~~~-~g~~~~i~~~~--~~~~~~~~l~~~Gv~v~~~~~------~~~lRi~~~~~~t~e~i~~~l 450 (465)
+.|+++ .++. ..++ .|.++++.+.. ...++.+.|+++||++.++.. .+++||+++..+|++++++++
T Consensus 330 ~~L~~~--g~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~ 405 (427)
T 2w8t_A 330 GGLKAM--GFRL--GTETCDSAIVAVMLEDQEQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVL 405 (427)
T ss_dssp HHHHHH--TCEE--SCSSCCSSEEEEEESSHHHHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHH
T ss_pred HHHHHc--CCcc--cCCCCCCCEEEEEECCHHHHHHHHHHHHHCCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHH
Confidence 988875 3321 1133 67888888842 356799999999999987632 258999999999999999999
Q ss_pred HHHHHHHHHhhhc
Q 012363 451 EILCKTLPVLDSN 463 (465)
Q Consensus 451 ~~l~~~l~~~~~~ 463 (465)
++|+++++++...
T Consensus 406 ~~l~~~l~~~~~~ 418 (427)
T 2w8t_A 406 GMFQAAGRAVGVI 418 (427)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCcc
Confidence 9999999887543
No 42
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=1.6e-36 Score=303.59 Aligned_cols=345 Identities=18% Similarity=0.214 Sum_probs=265.2
Q ss_pred cCCCceEEEeeeccEEEeCCCCEEEecccCcccccCC-CCCHHHHHHHHHHHhhcccccC-----CCCCHHHHHHHHHHH
Q 012363 77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALG-HGDADWIKAVVDQANVLTHVSN-----MYYSIPQIELAKRLV 150 (465)
Q Consensus 77 ~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lG-h~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~la~~l~ 150 (465)
+.+.|..+++++|.++|| +|++||||.++ .++| |++|++.+++.+++.+..+... .+..+...+++++++
T Consensus 23 ~~~~~~~~~~~~g~~v~~-~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la 98 (399)
T 3tqx_A 23 LYKSERIITSPQNAEIKV-GEKEVLNFCAN---NYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDIS 98 (399)
T ss_dssp CCCCCCCBCSCSSSEEEE-TTEEEEECSSC---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHH
T ss_pred CccccccccCCCCceEee-CCeeEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHH
Confidence 345677888999999999 99999999998 4678 7999999999999887533211 124456889999999
Q ss_pred hhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEe
Q 012363 151 ACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV 230 (465)
Q Consensus 151 ~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (465)
++++.+..+++++|++|+..+++.+. + +++.|++.+|+|++....+ ...+ ..+..+
T Consensus 99 ~~~~~~~~i~~~sGt~a~~~~l~~~~---~--------~gd~v~~~~~~~~~~~~~~-~~~g------------~~~~~~ 154 (399)
T 3tqx_A 99 EFLGTDDTILYSSCFDANGGLFETLL---G--------PEDAIISDELNHASIIDGI-RLCK------------AQRYRY 154 (399)
T ss_dssp HHHTCSEEEEESCHHHHHHTTHHHHC---C--------TTCEEEEETTCCHHHHHHH-HSCC------------SEEEEE
T ss_pred HHHCCCcEEEECchHHHHHHHHHHhc---C--------CCCEEEECCcccHHHHHHH-HHcC------------CceeEe
Confidence 99997777788889999999888654 1 6788998888876654332 2211 223456
Q ss_pred eCCCHHHHHhhcCC-----CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CC-CCCCccccccc
Q 012363 231 EYGNIEATRKLIQP-----GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-GL-GRTGYLWAHEH 303 (465)
Q Consensus 231 ~~~d~~~le~~l~~-----~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~-gr~g~~~~~~~ 303 (465)
|..|+++|+++++. .++++|++++.++++|.+.+ +++|.++|++||++||+||+|. |+ +..+.. ....
T Consensus 155 ~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~-~~~~ 229 (399)
T 3tqx_A 155 KNNAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD----LKSICDLADKYNALVMVDDSHAVGFIGENGRG-TPEY 229 (399)
T ss_dssp CTTCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCC-HHHH
T ss_pred CCCCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCc-hHHh
Confidence 66789999998863 16888889888888887765 9999999999999999999994 53 333332 3455
Q ss_pred cCC--cccEE--EecccCCCccceeeEEeCHHHHhhccCCCC--cCCCCChHHHHHHHHHHHHHh-c-CchHHHHHHHHH
Q 012363 304 YGI--FPDIM--TLAKPLAGGLPIGAALVTEKVASAINYGDH--GSTFAGSPLVCNAAIAVLDKI-S-NPAFLASVSKKG 375 (465)
Q Consensus 304 ~~~--~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~--~~t~~~~~~~~~aa~a~L~~~-~-~~~~~~~~~~~~ 375 (465)
+++ .+|++ ++||+++ |++.|++++++++++.+..... ..+.+.+++.++++.++++.+ + .++..++++++.
T Consensus 230 ~~~~~~~di~~~s~sK~~~-g~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 308 (399)
T 3tqx_A 230 CGVADRVDILTGTLGKALG-GASGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENS 308 (399)
T ss_dssp HTCTTCCSEEEEESSSSSC-SSCCEEEEECHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hCCCCCCcEEEecchHhcc-cCceEEEEcCHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 565 67887 8999998 6788999999999888764321 234467899999999999876 3 256777888888
Q ss_pred HHHHHHHHHHHHcCCCceeeeccceEEEEEecC--ChHHHHHHHHHCCceEeecCC------CCEEEEecCCCCcHHHHH
Q 012363 376 HYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELD 447 (465)
Q Consensus 376 ~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~--~~~~~~~~l~~~Gv~v~~~~~------~~~lRi~~~~~~t~e~i~ 447 (465)
+++.+.|+++ .+. ..++.|.++++.++. +..++.+.|+++||.+.+... .+++|++++..+++++++
T Consensus 309 ~~l~~~L~~~--g~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~ 383 (399)
T 3tqx_A 309 RYFRAGMEKL--GFQ---LVPGNHPIIPVMLGDAQLATNMADHLLQEGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLD 383 (399)
T ss_dssp HHHHHHHHHH--TCC---BCCCSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTTSCTTCEEEEEECCTTCCHHHHH
T ss_pred HHHHHHHHHc--CCC---cCCCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHH
Confidence 8888888776 222 336678888888742 467899999999999986531 258999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 012363 448 QAVEILCKTLPVL 460 (465)
Q Consensus 448 ~~l~~l~~~l~~~ 460 (465)
+++++|+++++++
T Consensus 384 ~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 384 RAIEAFGQVGKKL 396 (399)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999875
No 43
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=100.00 E-value=7.2e-37 Score=303.84 Aligned_cols=343 Identities=15% Similarity=0.056 Sum_probs=246.9
Q ss_pred EeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC----CCeEEe
Q 012363 85 ASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF----ADRVFF 160 (465)
Q Consensus 85 ~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~----~~~v~~ 160 (465)
.+++|+++||.||++||||.++.. +++ .+|+|++|+.+++.+..+.+.....+.++++++++.+.++ .++|++
T Consensus 10 ~~~~g~~~~d~~g~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~lr~~la~~~~~~~~~~~~~~~i~~ 86 (377)
T 3fdb_A 10 LRARNTMKWTRYGQGVLPLWVAES--DFS-TCPAVLQAITDAVQREAFGYQPDGSLLSQATAEFYADRYGYQARPEWIFP 86 (377)
T ss_dssp HHHTCCHHHHSSCTTSEECCSSCC--CSC-CCHHHHHHHHHHHHTTCCSSCCSSCCHHHHHHHHHHHHHCCCCCGGGEEE
T ss_pred hcCCCCceeeccCCCeeeecccCC--CCC-CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEE
Confidence 379999999999999999998853 454 8899999999998763222111224557777777776543 679999
Q ss_pred cCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC---CCHHH
Q 012363 161 SNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY---GNIEA 237 (465)
Q Consensus 161 ~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~ 237 (465)
|+||++|+..+++.+. .++++|++.+|+||++...+...+.. +..+|. .|+++
T Consensus 87 t~g~~~a~~~~~~~~~-----------~~gd~vl~~~~~~~~~~~~~~~~g~~-------------~~~~~~~~~~d~~~ 142 (377)
T 3fdb_A 87 IPDVVRGLYIAIDHFT-----------PAQSKVIVPTPAYPPFFHLLSATQRE-------------GIFIDATGGINLHD 142 (377)
T ss_dssp ESCHHHHHHHHHHHHS-----------CTTCCEEEEESCCTHHHHHHHHHTCC-------------EEEEECTTSCCHHH
T ss_pred eCChHHHHHHHHHHhc-----------CCCCEEEEcCCCcHhHHHHHHHcCCE-------------EEEccCCCCCCHHH
Confidence 9999999999998764 15789999999999987655443322 222333 28999
Q ss_pred HHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCC-c----cccccccCCcccEEE
Q 012363 238 TRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG-Y----LWAHEHYGIFPDIMT 312 (465)
Q Consensus 238 le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g-~----~~~~~~~~~~pdi~t 312 (465)
|+++++++..++++++|.|+ +|. .++.+.+++|+++|++||+++|+||+|+++++.| . .......+..+++.+
T Consensus 143 l~~~l~~~~~~v~i~~p~np-tG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s 220 (377)
T 3fdb_A 143 VEKGFQAGARSILLCNPYNP-LGM-VFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITA 220 (377)
T ss_dssp HHHHHHTTCCEEEEESSBTT-TTB-CCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEEC
T ss_pred HHHHhccCCCEEEEeCCCCC-CCC-CCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEe
Confidence 99999865556666777444 454 4578889999999999999999999999987776 2 112222334466778
Q ss_pred ecccCC-CccceeeEEe-CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHc-C
Q 012363 313 LAKPLA-GGLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLAR-N 389 (465)
Q Consensus 313 ~sK~lg-~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~ 389 (465)
+||.+| +|+|+||+++ ++++++.+.......+++.|+++++++.++|+.. +++.++.++.....++.+.+.+.+ +
T Consensus 221 ~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~ 298 (377)
T 3fdb_A 221 PSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYG--TDFLNQEVAYLKNNHDFLLHEIPKRI 298 (377)
T ss_dssp STTTTTCGGGCCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ChHhccCcchhheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999997 5899998776 7888888876555667889999999999999853 233344444444444444444433 4
Q ss_pred CCceeeeccceE-EEEEecC--ChHHHHHHHHHC-CceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012363 390 PHVKDVRGLGLI-IGIEFDV--SATPVVDACRDS-GLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 390 ~~~~~~~~~g~~-~~i~~~~--~~~~~~~~l~~~-Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
|.+....+.+.+ +++.+.. ...++...|+++ ||.+.++.. ++++|++++ .+++++++++++|+++++++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~--~~~e~i~~~l~~l~~~l~~~ 376 (377)
T 3fdb_A 299 PGAKITPMQATYLMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFA--TSREVLEEAIDRMAKAVSHH 376 (377)
T ss_dssp TTCEECCCSBCSEEEEECTTSCCCSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHHHTTC
T ss_pred CCceEecCCeeEEEEEECcccCCCHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHhhc
Confidence 444444444444 4677742 235678888776 999987631 378999877 38999999999999988653
No 44
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=100.00 E-value=1.4e-35 Score=297.15 Aligned_cols=348 Identities=16% Similarity=0.161 Sum_probs=262.4
Q ss_pred cCCCceEEEeeeccEEEeCCCCEEEecccCcccccCCC-CCHHHHHHHHHHHhhcccccC--CC---CCHHHHHHHHHHH
Q 012363 77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVSN--MY---YSIPQIELAKRLV 150 (465)
Q Consensus 77 ~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~~~~~--~~---~~~~~~~la~~l~ 150 (465)
+.+.|..+++++|+++||.||++||||.++ +++|| ++|++.+++.+++.+....+. .+ ..+...+++++|+
T Consensus 24 ~~~~~~~~~~~~g~~~~~~~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la 100 (401)
T 1fc4_A 24 LFKEERIITSAQQADITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLA 100 (401)
T ss_dssp CCCCCCCBCSCSSSEEEBTTSCEEEECCCS---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHH
T ss_pred CeeeeeeeccCCCceEEeeCCccEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHH
Confidence 345788899999999999999999999998 35896 899999999999876432111 11 2456889999999
Q ss_pred hhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEe
Q 012363 151 ACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV 230 (465)
Q Consensus 151 ~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (465)
++++.+..+++++|++|+..+++.+. + +++.|++.+++|.... ......+ ..+..+
T Consensus 101 ~~~g~~~~i~~~sGs~a~~~~~~~~~---~--------~gd~v~~~~~~~~~~~-~~~~~~g------------~~~~~~ 156 (401)
T 1fc4_A 101 AFLGMEDAILYSSCFDANGGLFETLL---G--------AEDAIISDALNHASII-DGVRLCK------------AKRYRY 156 (401)
T ss_dssp HHHTCSEEEEESCHHHHHHTTHHHHC---C--------TTCEEEEETTCCHHHH-HHHHTSC------------SEEEEE
T ss_pred HHhCCCcEEEeCChHHHHHHHHHHHc---C--------CCCEEEEcchhHHHHH-HHHHHcC------------CceEEE
Confidence 99986677788889999999888653 1 5778888887764433 2222211 223445
Q ss_pred eCCCHHHHHhhcCC--C---CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CCC-CCCccccccc
Q 012363 231 EYGNIEATRKLIQP--G---KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-GLG-RTGYLWAHEH 303 (465)
Q Consensus 231 ~~~d~~~le~~l~~--~---~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~g-r~g~~~~~~~ 303 (465)
|..|+++|+++++. . ++++|++++.++++|.+.+ +++|.++|++||++||+||+|. |+. +.|..+ ...
T Consensus 157 ~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~-~~~ 231 (401)
T 1fc4_A 157 ANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENGRGS-HEY 231 (401)
T ss_dssp CTTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCH-HHH
T ss_pred CCCCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCC----HHHHHHHHHHcCCEEEEECcccccccCCCCCcc-HHH
Confidence 66789999998863 1 5778888887777787765 9999999999999999999995 873 455432 223
Q ss_pred cCCc--ccEE--EecccCCCccceeeEEeCHHHHhhccCCC--CcCCCCChHHHHHHHHHHHHHhcC-chHHHHHHHHHH
Q 012363 304 YGIF--PDIM--TLAKPLAGGLPIGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAIAVLDKISN-PAFLASVSKKGH 376 (465)
Q Consensus 304 ~~~~--pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~~--~~~t~~~~~~~~~aa~a~L~~~~~-~~~~~~~~~~~~ 376 (465)
.++. .|++ ++||+++++. .|++++++++++.+.... +..+++.++++++++.++|+.+.. ++..++++++.+
T Consensus 232 ~~~~~~~di~~~s~sK~~~~~~-gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 310 (401)
T 1fc4_A 232 CDVMGRVDIITGTLGKALGGAS-GGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANAR 310 (401)
T ss_dssp TTCTTCCSEEEEESSSTTCSSS-CEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cCCCcCCcEEEecchhhccCCC-CEEEEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3443 3676 7899996654 499999999988876432 223667899999999999987743 567788888888
Q ss_pred HHHHHHHHHHHcCCCceeeeccceEEEEEecC--ChHHHHHHHHHCCceEeecCC------CCEEEEecCCCCcHHHHHH
Q 012363 377 YFKETLKQKLARNPHVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQ 448 (465)
Q Consensus 377 ~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~--~~~~~~~~l~~~Gv~v~~~~~------~~~lRi~~~~~~t~e~i~~ 448 (465)
++.+.|++. .+. ..++.|.++++.++. +..++.+.|.++||.+.++.. .+++|++++..++++++++
T Consensus 311 ~l~~~L~~~--g~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~ 385 (401)
T 1fc4_A 311 QFREQMSAA--GFT---LAGADHAIIPVMLGDAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITR 385 (401)
T ss_dssp HHHHHHHHT--TCC---BCCSSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHH
T ss_pred HHHHHHHHc--CCc---ccCCCCCEEEEEcCChHHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHH
Confidence 888887764 222 224678899988842 456789999999999987642 2579999998899999999
Q ss_pred HHHHHHHHHHHhhh
Q 012363 449 AVEILCKTLPVLDS 462 (465)
Q Consensus 449 ~l~~l~~~l~~~~~ 462 (465)
++++|+++++++.-
T Consensus 386 ~~~~l~~~~~~~~~ 399 (401)
T 1fc4_A 386 AVEAFTRIGKQLGV 399 (401)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999987754
No 45
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=100.00 E-value=2.8e-36 Score=300.96 Aligned_cols=355 Identities=12% Similarity=0.063 Sum_probs=255.0
Q ss_pred eEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC----CCe
Q 012363 82 VVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF----ADR 157 (465)
Q Consensus 82 ~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~----~~~ 157 (465)
++..+++|+++||.+|++||||..+.. .+ +.+|.|++++.+++.+..+.+.....+.++++++++++.++ .++
T Consensus 11 ~~~~~~~g~~~~d~~g~~~i~~~~~~~--~~-~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~ 87 (391)
T 3dzz_A 11 HVPKRQGNSIKWGVLKEKELPMWIAEM--DF-KIAPEIMASMEEKLKVAAFGYESVPAEYYKAVADWEEIEHRARPKEDW 87 (391)
T ss_dssp SCCCCCTTBTTTTTCCTTCEECCSSCC--SS-CCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHSCCCCGGG
T ss_pred hhccCCCCccceeccCCCceeccccCC--CC-CCCHHHHHHHHHHHhcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCHHH
Confidence 566789999999999999999998743 34 48999999999998764332222234557888888888765 679
Q ss_pred EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCC-CCceEeeCCCHH
Q 012363 158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM-PGVNFVEYGNIE 236 (465)
Q Consensus 158 v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~ 236 (465)
|++++||++|+..+++.+. .++++|++.+|+||++...+...+...... +.. .+..+. .|++
T Consensus 88 i~~~~g~~~a~~~~~~~l~-----------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~--~d~~ 150 (391)
T 3dzz_A 88 CVFASGVVPAISAMVRQFT-----------SPGDQILVQEPVYNMFYSVIEGNGRRVISS----DLIYENSKYS--VNWA 150 (391)
T ss_dssp EEEESCHHHHHHHHHHHHS-----------CTTCEEEECSSCCHHHHHHHHHTTCEEEEC----CCEEETTEEE--CCHH
T ss_pred EEECCCHHHHHHHHHHHhC-----------CCCCeEEECCCCcHHHHHHHHHcCCEEEEe----eeeecCCcee--ecHH
Confidence 9999999999999999764 168899999999999876555443322111 110 011110 3899
Q ss_pred HHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc-cccccccCC-ccc----E
Q 012363 237 ATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAHEHYGI-FPD----I 310 (465)
Q Consensus 237 ~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~-~~~~~~~~~-~pd----i 310 (465)
+|+++++..++++|+++..++++|. .++.+.+++|+++|++||++||+||+|+++.+.|. .......+. .+| +
T Consensus 151 ~l~~~l~~~~~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~ 229 (391)
T 3dzz_A 151 DLEEKLATPSVRMMVFCNPHNPIGY-AWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSL 229 (391)
T ss_dssp HHHHHHTSTTEEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEE
T ss_pred HHHHHHhccCceEEEEECCCCCCCc-ccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEE
Confidence 9999997446677666555555665 45788899999999999999999999999877764 223333322 266 5
Q ss_pred EEecccCC-CccceeeEEeC-HHHHhhccCCC-CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Q 012363 311 MTLAKPLA-GGLPIGAALVT-EKVASAINYGD-HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLA 387 (465)
Q Consensus 311 ~t~sK~lg-~G~~iG~v~~~-~~i~~~~~~~~-~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 387 (465)
.++||++| +|+|+|+++++ +++++.+.... ...+++.++++++++.++|+.. +++.+++++.....++.+.+.+.
T Consensus 230 ~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~l~ 307 (391)
T 3dzz_A 230 ISPSKTFNLAALHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEG--HDWLRELKQVLRDNFAYAREFLA 307 (391)
T ss_dssp ECSHHHHTCTTTCCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeChhhccccchhheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899998 68999999997 88888876432 2455778999999999999863 33344444444444444444444
Q ss_pred c-CCCceeeecc-ceEEEEEec---CChHHHHHHHH-HCCceEeecC---C--CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012363 388 R-NPHVKDVRGL-GLIIGIEFD---VSATPVVDACR-DSGLLVLTAG---K--GNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 388 ~-~~~~~~~~~~-g~~~~i~~~---~~~~~~~~~l~-~~Gv~v~~~~---~--~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
+ +|.+....+. +.++++.+. .+..++.+.|+ ++||.+.++. . .+++|++++ ++++++++++++|.++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~ 385 (391)
T 3dzz_A 308 KEVPEVKVLDSNASYLAWVDISALGMNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLA--CPKELVIDGMQRLKQG 385 (391)
T ss_dssp HHCTTSEECCCCBSSEEEEECGGGCSCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred hhCCCcEEeccCceEEEEEehhhcCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHH
Confidence 4 4444443444 445567773 36788999996 8999998753 1 378999877 6899999999999999
Q ss_pred HHHhh
Q 012363 457 LPVLD 461 (465)
Q Consensus 457 l~~~~ 461 (465)
+++++
T Consensus 386 l~~~~ 390 (391)
T 3dzz_A 386 VLNLN 390 (391)
T ss_dssp HHTCC
T ss_pred HHHhh
Confidence 98754
No 46
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=100.00 E-value=7.5e-35 Score=290.88 Aligned_cols=353 Identities=11% Similarity=0.072 Sum_probs=231.7
Q ss_pred EEEeeeccEEEeCCCC-----EEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCH-HHHHHHHHHHhhcC--
Q 012363 83 VLASGKGCKLYDAEGR-----EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI-PQIELAKRLVACSF-- 154 (465)
Q Consensus 83 ~~~~~~G~~~~d~dG~-----~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~-~~~~la~~l~~~~~-- 154 (465)
+-.+++|+++||.+|+ ++|||..+.. .+| .+|.|.+++.+++......+.....+ .++++++++.+.++
T Consensus 8 ~~~~~~~~~~~d~~~~~~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~~lr~~la~~l~~~~g~~ 84 (390)
T 1d2f_A 8 VDRHGTWCTQWDYVADRFGTADLLPFTISDM--DFA-TAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTA 84 (390)
T ss_dssp ----------------------CEECCSSSC--SSC-CCHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHHSCCC
T ss_pred ccccCCCccchhhhccccCCCCeeEeeecCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHHHHhcCCC
Confidence 3458999999999998 7899987754 567 78999999999986532221212445 66777777766554
Q ss_pred --CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCC-ceEee
Q 012363 155 --ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPG-VNFVE 231 (465)
Q Consensus 155 --~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 231 (465)
.++|++++||++|++.+++++. .++++|++.+|+||++...+...+..... .+...+ ..+.
T Consensus 85 ~~~~~v~~t~g~~~al~~~~~~l~-----------~~gd~vl~~~p~y~~~~~~~~~~g~~~~~----v~~~~~~~~~~- 148 (390)
T 1d2f_A 85 IDSQTVVYGPSVIYMVSELIRQWS-----------ETGEGVVIHTPAYDAFYKAIEGNQRTVMP----VALEKQADGWF- 148 (390)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHSS-----------CTTCEEEEEESCCHHHHHHHHHTTCEEEE----EECEECSSSEE-
T ss_pred CCHHHEEEcCCHHHHHHHHHHHhc-----------CCCCEEEEcCCCcHHHHHHHHHCCCEEEE----eecccCCCccc-
Confidence 6789999999999999999664 15789999999999987665443322111 011100 0000
Q ss_pred CCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc-cccccCCc-cc
Q 012363 232 YGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHYGIF-PD 309 (465)
Q Consensus 232 ~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~-~~~~~~~~-pd 309 (465)
.|+++|++++++.++++|++...++++|.+ ++.+++++|.++|++||++||+||+|+++.+.|..+ .....+.. +|
T Consensus 149 -~d~~~l~~~l~~~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d 226 (390)
T 1d2f_A 149 -CDMGKLEAVLAKPECKIMLLCSPQNPTGKV-WTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWA 226 (390)
T ss_dssp -CCHHHHHHHHTSTTEEEEEEESSCTTTCCC-CCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEE
T ss_pred -cCHHHHHHHhccCCCeEEEEeCCCCCCCcC-cCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHh
Confidence 389999999975456666543334444544 577899999999999999999999999987666422 11111110 13
Q ss_pred -EEEecccCC-CccceeeEEeC-HHHHhhccCCCC-cCCC-CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Q 012363 310 -IMTLAKPLA-GGLPIGAALVT-EKVASAINYGDH-GSTF-AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQ 384 (465)
Q Consensus 310 -i~t~sK~lg-~G~~iG~v~~~-~~i~~~~~~~~~-~~t~-~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~ 384 (465)
+.++||.++ +|+|+||++++ +++++.+..... ..++ +.|+++++++.++|+.. +++.++.++.....++.+.+
T Consensus 227 ~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~ 304 (390)
T 1d2f_A 227 LLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQG--APWLDALRIYLKDNLTYIAD 304 (390)
T ss_dssp EEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHH
T ss_pred hccCccHhhcccChhheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHH
Confidence 788999998 69999999985 788877754333 4455 77999999999999852 34455555555555555555
Q ss_pred HHHc-CCCceeeeccc-eEEEEEec---CChHHHHHHHH-HCCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHH
Q 012363 385 KLAR-NPHVKDVRGLG-LIIGIEFD---VSATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEIL 453 (465)
Q Consensus 385 ~~~~-~~~~~~~~~~g-~~~~i~~~---~~~~~~~~~l~-~~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l 453 (465)
.+.+ +|.+...++.| .++++.++ .+..++.+.|+ ++||.+.++.. ++++|++++. +++++++++++|
T Consensus 305 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~--~~~~l~~~l~~l 382 (390)
T 1d2f_A 305 KMNAAFPELNWQIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC--PRSKLEKGVAGL 382 (390)
T ss_dssp HHHHHCSSCCCCCCSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHH
T ss_pred HHHhhCCCCEEecCCccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC--CHHHHHHHHHHH
Confidence 4444 44344444555 44567874 36778999999 68999987631 3689998875 588999999999
Q ss_pred HHHHHHh
Q 012363 454 CKTLPVL 460 (465)
Q Consensus 454 ~~~l~~~ 460 (465)
.++++++
T Consensus 383 ~~~l~~~ 389 (390)
T 1d2f_A 383 INAIRAV 389 (390)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9998764
No 47
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=100.00 E-value=5.1e-35 Score=290.96 Aligned_cols=351 Identities=11% Similarity=0.026 Sum_probs=237.7
Q ss_pred ceEEEeeeccEEEeCC-CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC----C
Q 012363 81 PVVLASGKGCKLYDAE-GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF----A 155 (465)
Q Consensus 81 p~~~~~~~G~~~~d~d-G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~----~ 155 (465)
+++..+++|+++||.+ |+++|||..+.. .++ .||+|.+++.+++.+..+.+.....+.+.++++++++.++ .
T Consensus 6 ~~~~~~~~g~~~~d~~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~~~~~ 82 (383)
T 3kax_A 6 KTVNRRGTHSIKWDTYKNEELIHAWIADM--DFE-VPQPIQTALKKRIEHPIFGYTLPPENIGDIICNWTKKQYNWDIQK 82 (383)
T ss_dssp -------------CCCSSSCCEECCCSSC--SSC-CCHHHHHHHHHHHHSCCCCCCCCCTTHHHHHHHHHHHHHCCCCCG
T ss_pred ceeeccCCCceeeeccCCCCeeecccccC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCh
Confidence 4566789999999954 589999998853 444 8899999999998764332232355668899999988765 6
Q ss_pred CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCC-CceEeeCCC
Q 012363 156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP-GVNFVEYGN 234 (465)
Q Consensus 156 ~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d 234 (465)
++|++|+||++|+..+++.+. .++++|++.+|+||++...+...+...... +... +..+. .|
T Consensus 83 ~~v~~~~g~~~a~~~~~~~l~-----------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~--~d 145 (383)
T 3kax_A 83 EWIVFSAGIVPALSTSIQAFT-----------KENESVLVQPPIYPPFFEMVTTNNRQLCVS----PLQKQNDTYA--ID 145 (383)
T ss_dssp GGEEEESCHHHHHHHHHHHHC-----------CTTCEEEECSSCCHHHHHHHHHTTCEEEEC----CCEEETTEEE--CC
T ss_pred hhEEEcCCHHHHHHHHHHHhC-----------CCCCEEEEcCCCcHHHHHHHHHcCCEEEec----cceecCCcEE--Ec
Confidence 789999999999999999764 168899999999999876554443222111 1110 00010 28
Q ss_pred HHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc-cccc-----cCCcc
Q 012363 235 IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEH-----YGIFP 308 (465)
Q Consensus 235 ~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~-~~~~-----~~~~p 308 (465)
+++|++++++ ++++|+++..++++|. .++.+.+++|.++|++||++||+||+|+++++.|... .... .+..+
T Consensus 146 ~~~l~~~l~~-~~~~v~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i 223 (383)
T 3kax_A 146 FEHLEKQFQQ-GVKLMLLCSPHNPIGR-VWKKEELTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPFASLSEELAARTI 223 (383)
T ss_dssp HHHHHHHHTT-TCCEEEEESSBTTTTB-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEE
T ss_pred HHHHHHHhCc-CCeEEEEeCCCCCCCc-CcCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCceeHhhcCccccCcEE
Confidence 9999999964 4555555444444555 4588899999999999999999999999987776421 1111 24456
Q ss_pred cEEEecccCC-CccceeeEEe-CHHHHhhccCCCC-cCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Q 012363 309 DIMTLAKPLA-GGLPIGAALV-TEKVASAINYGDH-GSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQK 385 (465)
Q Consensus 309 di~t~sK~lg-~G~~iG~v~~-~~~i~~~~~~~~~-~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~ 385 (465)
++.++||.++ +|+|+||+++ ++++++.+..... ..+++.|+++++++.++|+.. +++.+++++.....++.+.+.
T Consensus 224 ~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~ 301 (383)
T 3kax_A 224 TCMAPSKTFNIAGLQASIIIIPNEKLRQAFTSIQYRQGFHGLNIFAYTAMQSAYTEC--NDWLNEIRFYIEDNAKFACEY 301 (383)
T ss_dssp EEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHTTTC--HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEChhhccCcchhheEEEeCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999 6999999998 6888887764322 334578999999999988742 333444444444444444444
Q ss_pred HHc-CCCceeeeccceE-EEEEec---CChHHHHHHHH-HCCceEeecC---C--CCEEEEecCCCCcHHHHHHHHHHHH
Q 012363 386 LAR-NPHVKDVRGLGLI-IGIEFD---VSATPVVDACR-DSGLLVLTAG---K--GNVVRLVPPLIISEQELDQAVEILC 454 (465)
Q Consensus 386 ~~~-~~~~~~~~~~g~~-~~i~~~---~~~~~~~~~l~-~~Gv~v~~~~---~--~~~lRi~~~~~~t~e~i~~~l~~l~ 454 (465)
+.+ +|.+....+.+.+ .++.+. .+..++.+.|+ ++||.+.++. . .+++|++++ .+++++++++++|+
T Consensus 302 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~--~~~~~i~~~l~~l~ 379 (383)
T 3kax_A 302 IKDHIPTLSVMKPEGSFLLWIDCSALNLSQDERTKLLEEKGKIIVEPGEKYGLGGEEHIGINIG--CPRSVLEEILNRLR 379 (383)
T ss_dssp HHHHCTTCEECCCSBSSEEEEECGGGCCCHHHHHHHHHHTSCEECEESGGGCTTCTTEEEEECS--SCHHHHHHHHHHHH
T ss_pred HHhhCCCceEecCCceEEEEEEccccCCCHHHHHHHHHhhCCEEeECchhhcCCCCCeEEEEEc--CCHHHHHHHHHHHH
Confidence 443 4444444445544 457773 36788999998 6899998752 1 378999876 58999999999999
Q ss_pred HHH
Q 012363 455 KTL 457 (465)
Q Consensus 455 ~~l 457 (465)
+++
T Consensus 380 ~~l 382 (383)
T 3kax_A 380 HTF 382 (383)
T ss_dssp HHH
T ss_pred HHh
Confidence 876
No 48
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=100.00 E-value=2.2e-34 Score=288.22 Aligned_cols=342 Identities=18% Similarity=0.148 Sum_probs=259.2
Q ss_pred CCceEEEeeeccEEEeCCCCEEEecccCcccccCCC-CCHHHHHHHHHHHhhccccc-----CCCCCHHHHHHHHHHHhh
Q 012363 79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVS-----NMYYSIPQIELAKRLVAC 152 (465)
Q Consensus 79 ~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~~~~-----~~~~~~~~~~la~~l~~~ 152 (465)
+.|+++++++|+++| .+|++|+||.++.+ +|+ .+|.+.+++.++++.....+ ..+..+...++++++++.
T Consensus 25 ~~~~~~~~~~g~~~~-~~g~~~idl~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~ 100 (398)
T 3a2b_A 25 AYFRPIQSKQDTEVK-IDGRRVLMFGSNSY---LGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAY 100 (398)
T ss_dssp CSSCCBCSCSSSEEE-ETTEEEEECSCSCT---TCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHH
T ss_pred cceeeecCCCCceEE-ECCceEEEeecccc---cCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHH
Confidence 578889999999999 89999999999854 687 88999999999987643211 122456689999999999
Q ss_pred cCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC
Q 012363 153 SFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY 232 (465)
Q Consensus 153 ~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (465)
++.+++++++||++|+..+++.+. .+++.|++.+|+|.++...+... + ..+..+|.
T Consensus 101 ~g~~~v~~~~ggt~a~~~~~~~~~-----------~~gd~V~~~~p~~~~~~~~~~~~-g------------~~~~~v~~ 156 (398)
T 3a2b_A 101 VGKEAAILFSTGFQSNLGPLSCLM-----------GRNDYILLDERDHASIIDGSRLS-F------------SKVIKYGH 156 (398)
T ss_dssp HTCSEEEEESSHHHHHHHHHHHSS-----------CTTCEEEEETTCCHHHHHHHHHS-S------------SEEEEECT
T ss_pred hCCCcEEEECCHHHHHHHHHHHHh-----------CCCCEEEECCccCHHHHHHHHHc-C------------CceEEeCC
Confidence 998999999999999999999764 15788999999886665332222 1 12344566
Q ss_pred CCHHHHHhhcCCC---CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC--CCCCccccccccCCc
Q 012363 233 GNIEATRKLIQPG---KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL--GRTGYLWAHEHYGIF 307 (465)
Q Consensus 233 ~d~~~le~~l~~~---~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~--gr~g~~~~~~~~~~~ 307 (465)
.|+++|+++++.. ++++|+++++++++|.+.+ +++|.++|++||+++|+||+|..+ ++.+... .+.+++.
T Consensus 157 ~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~----~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~ 231 (398)
T 3a2b_A 157 NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN----LPELTSIANEFDAAVMVDDAHSLGVIGHKGAGT-ASHFGLN 231 (398)
T ss_dssp TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCH-HHHHTCG
T ss_pred CCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCCcccccCCCCCch-HhhcCCC
Confidence 7999999998742 5788888888877787765 899999999999999999999754 3333322 3334543
Q ss_pred --ccEE--EecccCCC-ccceeeEEeCHHHHhhccCC--CCcCCCCChHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHH
Q 012363 308 --PDIM--TLAKPLAG-GLPIGAALVTEKVASAINYG--DHGSTFAGSPLVCNAAIAVLDKISN-PAFLASVSKKGHYFK 379 (465)
Q Consensus 308 --pdi~--t~sK~lg~-G~~iG~v~~~~~i~~~~~~~--~~~~t~~~~~~~~~aa~a~L~~~~~-~~~~~~~~~~~~~l~ 379 (465)
+|++ ++||+++. | ||+++++++++.+... .+..+...+++.++++.++|+.++. ++..++++++.+++.
T Consensus 232 ~~~di~~~s~sK~~~~~G---G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~ 308 (398)
T 3a2b_A 232 DDVDLIMGTFSKSLASLG---GFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAK 308 (398)
T ss_dssp GGCSEEEEESSSTTCSSC---EEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHH
T ss_pred cCCeEEEecccccccCCC---cEEEeCHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 5777 89999984 5 9999999998887642 1344455667766677788876532 456777788888888
Q ss_pred HHHHHHHHcCCCceeeeccceEEEEEecC--ChHHHHHHHHHCCceEeecCC------CCEEEEecCCCCcHHHHHHHHH
Q 012363 380 ETLKQKLARNPHVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVE 451 (465)
Q Consensus 380 ~~l~~~~~~~~~~~~~~~~g~~~~i~~~~--~~~~~~~~l~~~Gv~v~~~~~------~~~lRi~~~~~~t~e~i~~~l~ 451 (465)
+.|+++ .+. ..++.|.++++.++. +..++.+.|+++||.+.++.. .+++|++++..+++++++++++
T Consensus 309 ~~L~~~--g~~---~~~~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~ 383 (398)
T 3a2b_A 309 AQLLDH--GFD---LGATESPILPIFIRSNEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIE 383 (398)
T ss_dssp HHHHHT--TCC---BCSCCSSEEEEECCCHHHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHH
T ss_pred HHHHhc--CCC---cCCCCCCEEEEEcCCHHHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHH
Confidence 777664 222 234568888888742 356799999999999988642 3689999998889999999999
Q ss_pred HHHHHHHHhh
Q 012363 452 ILCKTLPVLD 461 (465)
Q Consensus 452 ~l~~~l~~~~ 461 (465)
+|+++++++.
T Consensus 384 ~l~~~l~~~~ 393 (398)
T 3a2b_A 384 KMVKVFKQAE 393 (398)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHhC
Confidence 9999987653
No 49
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=100.00 E-value=2.8e-35 Score=294.78 Aligned_cols=356 Identities=13% Similarity=0.062 Sum_probs=247.9
Q ss_pred EEEeeeccEEEeCCCC-------EEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC-
Q 012363 83 VLASGKGCKLYDAEGR-------EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF- 154 (465)
Q Consensus 83 ~~~~~~G~~~~d~dG~-------~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~- 154 (465)
+..+++|+++||.+|+ +++||.++.. .++ .+|.|.+++.++++.....+.....+.++++++++.+.++
T Consensus 9 ~~~~~~g~~~~d~~g~~~g~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~ 85 (399)
T 1c7n_A 9 ISRKNLGSLKWDLMYSQNPEVGNEVVPLSVADM--EFK-NPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQW 85 (399)
T ss_dssp CCCTTTTBHHHHHHHHHCTTCCTTCCCCCSSSC--SSC-CCHHHHHHHHHHHHHCCCSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred ccccCCCccccccchhhccccCCCceeeeecCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHhCC
Confidence 3457999999999884 7899988753 455 6899999999998753221111123345666666655444
Q ss_pred ---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCC-CCceEe
Q 012363 155 ---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM-PGVNFV 230 (465)
Q Consensus 155 ---~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 230 (465)
.++|++|+||++|+..+++.+. .++++|++.+|+||++...+...+..... .+.. .+..+.
T Consensus 86 ~~~~~~v~~t~g~~~a~~~~~~~l~-----------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~----~~~~~~~g~~~ 150 (399)
T 1c7n_A 86 DIQTDWIINTAGVVPAVFNAVREFT-----------KPGDGVIIITPVYYPFFMAIKNQERKIIE----CELLEKDGYYT 150 (399)
T ss_dssp CCCGGGEEEESSHHHHHHHHHHHHC-----------CTTCEEEECSSCCTHHHHHHHTTTCEEEE----CCCEEETTEEE
T ss_pred CCChhhEEEcCCHHHHHHHHHHHhc-----------CCCCEEEEcCCCcHhHHHHHHHcCCEEEe----cccccCCCCEE
Confidence 6789999999999999999764 15789999999999988665443322111 1111 000111
Q ss_pred eCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-ccccc-----c
Q 012363 231 EYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEH-----Y 304 (465)
Q Consensus 231 ~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~~~~-----~ 304 (465)
.|+++|+++++..++++|++...++++|. .++++++++|+++|++||++||+||+|++|++.|.. ..... .
T Consensus 151 --~d~~~l~~~l~~~~~~~v~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 227 (399)
T 1c7n_A 151 --IDFQKLEKLSKDKNNKALLFCSPHNPVGR-VWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLA 227 (399)
T ss_dssp --CCHHHHHHHHTCTTEEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHH
T ss_pred --EcHHHHHHHhccCCCcEEEEcCCCCCCCc-CcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCcccc
Confidence 38999999997445666665444444555 468899999999999999999999999998766632 12221 2
Q ss_pred CCcccEEEecccCC-CccceeeEEeC-HHHHhhccCCCCcCCC-CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Q 012363 305 GIFPDIMTLAKPLA-GGLPIGAALVT-EKVASAINYGDHGSTF-AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKET 381 (465)
Q Consensus 305 ~~~pdi~t~sK~lg-~G~~iG~v~~~-~~i~~~~~~~~~~~t~-~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~ 381 (465)
+....+.++||.++ +|+|+||++++ +++++.+.......++ +.|+++++++.++|+.. +++.+++++.....++.
T Consensus 228 ~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~ 305 (399)
T 1c7n_A 228 DKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKEC--GKWLDGCIKVIDKNQRI 305 (399)
T ss_dssp TTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHH
Confidence 33445668999999 69999999997 6788877643333334 57899999999998753 34455555555555555
Q ss_pred HHHHHHc-CCCceeeeccceE-EEEEec---CChHHHHHHHH-HCCceEeecC-----CCCEEEEecCCCCcHHHHHHHH
Q 012363 382 LKQKLAR-NPHVKDVRGLGLI-IGIEFD---VSATPVVDACR-DSGLLVLTAG-----KGNVVRLVPPLIISEQELDQAV 450 (465)
Q Consensus 382 l~~~~~~-~~~~~~~~~~g~~-~~i~~~---~~~~~~~~~l~-~~Gv~v~~~~-----~~~~lRi~~~~~~t~e~i~~~l 450 (465)
+.+.+.+ +|.+...++.|.+ +++.++ .+..++.+.|+ ++||.+.++. ..+++|++++.. ++++++++
T Consensus 306 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~--~~~l~~~l 383 (399)
T 1c7n_A 306 VKDFFEVNHPEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAP--SSVIQESL 383 (399)
T ss_dssp HHHHHHHHCTTSBCCCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSC--HHHHHHHH
T ss_pred HHHHHHhhCCCCeEecCCceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEeccC--HHHHHHHH
Confidence 5555554 5544444555554 467874 35778999998 6899998753 136899988754 78999999
Q ss_pred HHHHHHHHHhhhc
Q 012363 451 EILCKTLPVLDSN 463 (465)
Q Consensus 451 ~~l~~~l~~~~~~ 463 (465)
++|.+++++++++
T Consensus 384 ~~l~~~l~~~~~~ 396 (399)
T 1c7n_A 384 ERLNKALKDLKNR 396 (399)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887643
No 50
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=100.00 E-value=3.6e-35 Score=292.88 Aligned_cols=349 Identities=11% Similarity=0.030 Sum_probs=249.1
Q ss_pred eEEEeeeccEEEeCCCCEE-----EecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--
Q 012363 82 VVLASGKGCKLYDAEGREY-----LDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-- 154 (465)
Q Consensus 82 ~~~~~~~G~~~~d~dG~~y-----lD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-- 154 (465)
++..+++|+++||.+|++| +||..+.. ..+.||+|++++.+++.+..+.+..+..+.+.++++++++.++
T Consensus 11 ~~~~~~~g~~~~d~~~~~~~~~~~i~l~~~~~---~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~~ 87 (391)
T 4dq6_A 11 IVDRSNNFSSKWSEMEKKYGTNDLLPMWVADM---DFKAAPCIIDSLKNRLEQEIYGYTTRPDSYNESIVNWLYRRHNWK 87 (391)
T ss_dssp CCCCTTTTBHHHHCHHHHHSCSCSEECCSSSC---SSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHCCC
T ss_pred ccccccCCceeeeecccccCCCCceeccccCC---CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 3445789999999987655 99988743 3347899999999998764333333445668899999988876
Q ss_pred --CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCC--CCceEe
Q 012363 155 --ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM--PGVNFV 230 (465)
Q Consensus 155 --~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 230 (465)
.++|++++||++|+..+++.+. .++++|++.+|+||++...+...+...... +.. .+..+.
T Consensus 88 ~~~~~v~~~~g~~~a~~~~~~~~~-----------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~ 152 (391)
T 4dq6_A 88 IKSEWLIYSPGVIPAISLLINELT-----------KANDKIMIQEPVYSPFNSVVKNNNRELIIS----PLQKLENGNYI 152 (391)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHHS-----------CTTCEEEECSSCCTHHHHHHHHTTCEEEEC----CCEECTTSCEE
T ss_pred CcHHHeEEcCChHHHHHHHHHHhC-----------CCCCEEEEcCCCCHHHHHHHHHcCCeEEee----eeeecCCCceE
Confidence 6789999999999999999774 158899999999999876655443322211 111 000000
Q ss_pred eCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-ccccc-----c
Q 012363 231 EYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEH-----Y 304 (465)
Q Consensus 231 ~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~~~~-----~ 304 (465)
-|+++|++++++ +++|+++..++++|. .++.+.+++|+++|++||++||+||+|++|.+.|.. ..... .
T Consensus 153 --~d~~~l~~~l~~--~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 227 (391)
T 4dq6_A 153 --MDYEDIENKIKD--VKLFILCNPHNPVGR-VWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFE 227 (391)
T ss_dssp --CCHHHHHHHCTT--EEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHH
T ss_pred --eeHHHHHHHhhc--CCEEEEECCCCCCCc-CcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCcccc
Confidence 289999999976 555555544555565 457888999999999999999999999998776642 11211 1
Q ss_pred CCcccEEEecccCC-CccceeeEEeCH-HHHhhccCC-CCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Q 012363 305 GIFPDIMTLAKPLA-GGLPIGAALVTE-KVASAINYG-DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKET 381 (465)
Q Consensus 305 ~~~pdi~t~sK~lg-~G~~iG~v~~~~-~i~~~~~~~-~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~ 381 (465)
+....+.++||.++ +|+|+|++++++ ++++.+... ....+++.|+++++++.++|+.. +++.++.++.....++.
T Consensus 228 ~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~ 305 (391)
T 4dq6_A 228 KNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNG--ESWLESFLEYLESNIDF 305 (391)
T ss_dssp HTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhch--HHHHHHHHHHHHHHHHH
Confidence 22344668999998 689999999875 888877643 23345678999999999999853 33444455554555555
Q ss_pred HHHHHHc-CCCceeeeccceE-EEEEec---CChHHHHHHHHHC-CceEeecC-----CCCEEEEecCCCCcHHHHHHHH
Q 012363 382 LKQKLAR-NPHVKDVRGLGLI-IGIEFD---VSATPVVDACRDS-GLLVLTAG-----KGNVVRLVPPLIISEQELDQAV 450 (465)
Q Consensus 382 l~~~~~~-~~~~~~~~~~g~~-~~i~~~---~~~~~~~~~l~~~-Gv~v~~~~-----~~~~lRi~~~~~~t~e~i~~~l 450 (465)
+.+.+.+ +|.+...++.+.+ .++.++ .+..++.+.|+++ ||.+.++. ..+++|++++ ++++++++++
T Consensus 306 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l 383 (391)
T 4dq6_A 306 AIKYINENMPKLKVRKPEGTYLLWVDFSALGLSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLA--CPRSMLEEAL 383 (391)
T ss_dssp HHHHHHHHCTTSEECCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECC--SCHHHHHHHH
T ss_pred HHHHHHhhCCCCEecCCCccEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEc--CCHHHHHHHH
Confidence 5554444 4544445555554 457774 3678899999998 99998752 1378999877 6899999999
Q ss_pred HHHHHHH
Q 012363 451 EILCKTL 457 (465)
Q Consensus 451 ~~l~~~l 457 (465)
++|++++
T Consensus 384 ~~l~~~l 390 (391)
T 4dq6_A 384 IRIKNAI 390 (391)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999876
No 51
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=100.00 E-value=2.7e-35 Score=296.09 Aligned_cols=335 Identities=18% Similarity=0.143 Sum_probs=251.6
Q ss_pred eeeccEEEeCCCCEEEecccCcccccCCC-CCHHHHHHHHHHHhhcccc-----cCCCCCHHHHHHHHHHHhhcCCCeEE
Q 012363 86 SGKGCKLYDAEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHV-----SNMYYSIPQIELAKRLVACSFADRVF 159 (465)
Q Consensus 86 ~~~G~~~~d~dG~~ylD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~~~-----~~~~~~~~~~~la~~l~~~~~~~~v~ 159 (465)
++.+.+++|.+|++||||+++.+ +|+ +||+|++++.+++++.... ...+..+...+++++++++++.+..+
T Consensus 47 ~~~~~~~~~~~g~~~ld~~s~~~---l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i 123 (409)
T 3kki_A 47 NGKHLVLGKQASPDDIILQSNDY---LALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDECL 123 (409)
T ss_dssp TSSCTTCCCCCCTTSEECCCSCT---TCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCSEEE
T ss_pred CCCeeeeCCCCCCceEEeeccCc---cCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCCCeEE
Confidence 57788899999999999999754 565 7899999999999874221 11122344678999999999977788
Q ss_pred ecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHH
Q 012363 160 FSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATR 239 (465)
Q Consensus 160 ~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 239 (465)
++++|++|+..+++++. + +++.|++.+++|...... ....+ ..+..++.+|+++|+
T Consensus 124 ~~~sGt~a~~~~l~~~~---~--------~gd~Vl~~~~~~~~~~~~-~~~~g------------~~~~~~~~~d~~~le 179 (409)
T 3kki_A 124 LSQSGWNANVGLLQTIC---Q--------PNTNVYIDFFAHMSLWEG-ARYAN------------AQAHPFMHNNCDHLR 179 (409)
T ss_dssp EESCHHHHHHHHHHHHC---C--------TTCEEEEETTSCHHHHHH-HHHTT------------CEEEEECTTCHHHHH
T ss_pred EecchHHHHHHHHHHhc---C--------CCCEEEECCCcCHHHHHH-HHHcC------------CeEEEecCCCHHHHH
Confidence 88999999999998654 2 688888888877554432 22221 122344557999999
Q ss_pred hhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC--CCCCCccccccccCC--cccE--EEe
Q 012363 240 KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG--LGRTGYLWAHEHYGI--FPDI--MTL 313 (465)
Q Consensus 240 ~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g--~gr~g~~~~~~~~~~--~pdi--~t~ 313 (465)
++++.+++++|+++++++++|.+.+ +++|+++|++||++||+||+|++ +|++|..+. ..+++ .+|+ .++
T Consensus 180 ~~l~~~~~~~vi~~~~~nptG~~~~----l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~-~~~~~~~~~di~~~s~ 254 (409)
T 3kki_A 180 MLIQRHGPGIIVVDSIYSTLGTIAP----LAELVNISKEFGCALLVDESHSLGTHGPNGAGLL-AELGLTREVHFMTASL 254 (409)
T ss_dssp HHHHHHCSCEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHH-HHHTCGGGCSEEEEES
T ss_pred HHHHhcCCeEEEECCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCcch-hhcCCCCCCCEEEeec
Confidence 9997444689999999888888765 99999999999999999999998 777666443 44455 4566 578
Q ss_pred cccCCCccceeeEEeCHHHHhhccCCCCc--CCCCChHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHcCC
Q 012363 314 AKPLAGGLPIGAALVTEKVASAINYGDHG--STFAGSPLVCNAAIAVLDKISN-PAFLASVSKKGHYFKETLKQKLARNP 390 (465)
Q Consensus 314 sK~lg~G~~iG~v~~~~~i~~~~~~~~~~--~t~~~~~~~~~aa~a~L~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~ 390 (465)
||++++| .|++++++++++.+...... .+.+.+++.++++.++++.+++ +++.++++++.+++++.|+++ .+.
T Consensus 255 sK~~~~~--gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~ 330 (409)
T 3kki_A 255 AKTFAYR--AGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQL--GLT 330 (409)
T ss_dssp SSTTCSS--CEEEEESSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT--TCC
T ss_pred chhhCCC--ceEEEECHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc--CCc
Confidence 9999876 59999999988877542221 1223678899999999987744 466777777777777777654 222
Q ss_pred CceeeeccceEEEEEecC--ChHHHHHHHHHCCceEeecCC------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012363 391 HVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 391 ~~~~~~~~g~~~~i~~~~--~~~~~~~~l~~~Gv~v~~~~~------~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
+.+.+.++++.+.. ...++.+.|+++||++.+... .+++||+++..+|++++++++++|+++++..
T Consensus 331 ----~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 404 (409)
T 3kki_A 331 ----IRSESQIIGLETGDERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNYG 404 (409)
T ss_dssp ----CCCSSSEEEEEEESHHHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred ----cCCCCCEEEEEeCCHHHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhcC
Confidence 23578888888742 356789999999999875321 3689999999999999999999999998754
No 52
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=100.00 E-value=7.7e-34 Score=288.76 Aligned_cols=338 Identities=13% Similarity=0.106 Sum_probs=239.4
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcc-----cccCCCCCHHHHHHHHHHHhhcC---CCeEEecCCHHHHHH
Q 012363 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-----HVSNMYYSIPQIELAKRLVACSF---ADRVFFSNTGTEANE 169 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~-----~~~~~~~~~~~~~la~~l~~~~~---~~~v~~~~sG~eA~~ 169 (465)
..+|||.++.+.. .+++++.+.+++.+++++.. +....+..+.++++++++.+.++ .++|++|+||++|+.
T Consensus 76 ~~~i~l~~g~p~~-~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~ 154 (448)
T 3aow_A 76 SDIISLAGGLPNP-KTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALD 154 (448)
T ss_dssp SSSEECCCCCCCG-GGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHH
T ss_pred CCcEeCCCCCCCc-hhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHH
Confidence 4589999988654 35788999999999887531 11111122334555555544335 479999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC----CCHHHHHhhcC--
Q 012363 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY----GNIEATRKLIQ-- 243 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~-- 243 (465)
.+++++. ++++.|++.+|+|+++...+...+.. +..+|. .|+++|+++++
T Consensus 155 ~~~~~l~-----------~~Gd~Vlv~~p~y~~~~~~~~~~g~~-------------~~~v~~~~~g~d~~~L~~~l~~~ 210 (448)
T 3aow_A 155 LIGRVFL-----------NPGDIVVVEAPTYLAALQAFNFYEPQ-------------YIQIPLDDEGMKVEILEEKLKEL 210 (448)
T ss_dssp HHHHHHC-----------CTTCEEEEEESCCHHHHHHHHTTCCE-------------EEEEEEETTEECHHHHHHHHHHH
T ss_pred HHHHHHc-----------CCCCEEEEeCCChHHHHHHHHHcCCE-------------EEEeccCCCCCCHHHHHHHHhhh
Confidence 9999764 26899999999999987655433221 112222 28999999886
Q ss_pred --C-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc----ccccccCCcccEEEeccc
Q 012363 244 --P-GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL----WAHEHYGIFPDIMTLAKP 316 (465)
Q Consensus 244 --~-~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~----~~~~~~~~~pdi~t~sK~ 316 (465)
+ .++++|++.|+.+|++...++.+++++|.++|++||++||+||+|+++.+.|.. ..++..+..+++.+|||.
T Consensus 211 ~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~ 290 (448)
T 3aow_A 211 KSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKI 290 (448)
T ss_dssp HHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTT
T ss_pred hccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhh
Confidence 4 367887666654443234568999999999999999999999999988665542 223333456778899999
Q ss_pred CCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHc-CC-Ccee
Q 012363 317 LAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLAR-NP-HVKD 394 (465)
Q Consensus 317 lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~-~~~~ 394 (465)
++.|+|+||+++++++++.+.......+++.|+++++++.++|+....+++.+++++.....++.+.+.+.+ .| .+..
T Consensus 291 ~~~GlriG~v~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~ 370 (448)
T 3aow_A 291 LAPGFRIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKW 370 (448)
T ss_dssp TCGGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEE
T ss_pred ccccccEEEEEeCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 998999999999999998886544455677899999999999874311334444444443444444444433 34 2333
Q ss_pred e-eccceEEEEEec--CChHHHHHHHHHCCceEeecC-------CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012363 395 V-RGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAG-------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 395 ~-~~~g~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~-------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
+ +..|+++|+.++ .+..++++.|+++||.+.++. ..+++|++++. .++++|++++++|.+++++..
T Consensus 371 ~~p~~g~~~~v~~~~~~~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~~-~~~e~i~~~~~~L~~~l~~~~ 446 (448)
T 3aow_A 371 TKPEGGMFIWVTLPDGIDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTY-VDEDKIMEGIKRLAETIKEEL 446 (448)
T ss_dssp CCCSBSSEEEEECSTTCCHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS-SCTHHHHHHHHHHHHHHHHHH
T ss_pred eCCCccEEEEEEcCCCCCHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 3 345788888884 357789999999999998852 13789999876 489999999999999998764
No 53
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=100.00 E-value=1.3e-33 Score=281.29 Aligned_cols=344 Identities=19% Similarity=0.151 Sum_probs=251.3
Q ss_pred cccccCCCceEEEeeeccEEEeCCCCEEEecccCcccccCC-CCCHHHHHHHHHHHhhcccc--cCC---CCCHHHHHHH
Q 012363 73 LVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALG-HGDADWIKAVVDQANVLTHV--SNM---YYSIPQIELA 146 (465)
Q Consensus 73 ~~~~~~~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lG-h~~p~v~~a~~~~~~~~~~~--~~~---~~~~~~~~la 146 (465)
....+.+.|.++.+++|+++| .+|++||||.++.+ +| +.+|++++++.++++..... ... ...+...+++
T Consensus 15 ~~~~~~~~~~~~~~~~g~~~~-~~g~~~id~~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~ 90 (384)
T 1bs0_A 15 RAADALRRRYPVAQGAGRWLV-ADDRQYLNFSSNDY---LGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALE 90 (384)
T ss_dssp CGGGCCCCCCCCSBCSSSEEE-ETTEEEEECSCCCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHH
T ss_pred HhcCCccccccccCCCCceEE-ECCceEEEeeccCc---cCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHH
Confidence 333455778889999999999 79999999999743 67 58999999999998763221 111 2346688999
Q ss_pred HHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCC
Q 012363 147 KRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPG 226 (465)
Q Consensus 147 ~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~ 226 (465)
++|+++++.++++++++|++|+..+++.+. + +++.|++.+|+|. .........+ ..
T Consensus 91 ~~la~~~g~~~~i~~~sGt~a~~~~~~~~~---~--------~gd~v~~~~~~~~-~~~~~~~~~g------------~~ 146 (384)
T 1bs0_A 91 EELAEWLGYSRALLFISGFAANQAVIAAMM---A--------KEDRIAADRLSHA-SLLEAASLSP------------SQ 146 (384)
T ss_dssp HHHHHHHTCSEEEEESCHHHHHHHHHHHHC---C--------TTCEEEEETTCCH-HHHHHHHTSS------------SE
T ss_pred HHHHHHhCCCcEEEeCCcHHHHHHHHHHhC---C--------CCcEEEEcccccH-HHHHHHHHcC------------CC
Confidence 999999997788888889999999988653 1 5777777777654 4333332221 22
Q ss_pred ceEeeCCCHHHHHhhcCCC--CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC--CCCCcccccc
Q 012363 227 VNFVEYGNIEATRKLIQPG--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL--GRTGYLWAHE 302 (465)
Q Consensus 227 ~~~~~~~d~~~le~~l~~~--~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~--gr~g~~~~~~ 302 (465)
+..+|..|+++|++++++. .+++|++++.++++|.+.+ +++|.++|++||++||+||+|..+ ++.|..+ ..
T Consensus 147 ~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~-~~ 221 (384)
T 1bs0_A 147 LRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGS-CW 221 (384)
T ss_dssp EEEECTTCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCH-HH
T ss_pred EEEeCCCCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCcccceecCCCCch-HH
Confidence 3456667999999998642 3678888877777777765 899999999999999999999632 3334432 24
Q ss_pred ccCCcccEE--EecccCCCccceeeEEeCHHHHhhccCC--CCcCCCCChHHHHHHHHHHHHHhcC---chHHHHHHHHH
Q 012363 303 HYGIFPDIM--TLAKPLAGGLPIGAALVTEKVASAINYG--DHGSTFAGSPLVCNAAIAVLDKISN---PAFLASVSKKG 375 (465)
Q Consensus 303 ~~~~~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~--~~~~t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~ 375 (465)
.++..+|++ ++||+++. +.|++++++++++.+... .+..+.+.+++.++++.++|+.+.+ ++..++++++.
T Consensus 222 ~~~~~~di~~~s~sK~~~~--~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~ 299 (384)
T 1bs0_A 222 LQKVKPELLVVTFGKGFGV--SGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALI 299 (384)
T ss_dssp HTTCCCSEEEEESSSTTSS--CCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred hcCCCCcEEEeeccchhhc--cCcEEEeCHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 455668888 89999974 449999999998877542 1233446899999999999987653 34555666666
Q ss_pred HHHHHHHHHHHHcCCCceeeeccceEEEEEec--CChHHHHHHHHHCCceEeecCC------CCEEEEecCCCCcHHHHH
Q 012363 376 HYFKETLKQKLARNPHVKDVRGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELD 447 (465)
Q Consensus 376 ~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~~------~~~lRi~~~~~~t~e~i~ 447 (465)
+++.+.|++ .+. ....+.|.++++.++ .+..++.+.|.++||.+.++.. .+++|++++..+++++++
T Consensus 300 ~~l~~~L~~----~g~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~ 374 (384)
T 1bs0_A 300 TRFRAGVQD----LPF-TLADSCSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDID 374 (384)
T ss_dssp HHHHHHHTT----SSC-EECSCCSSBCCEEEESHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHH
T ss_pred HHHHHHHHh----cCC-cccCCCCCEEEEEeCCHHHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHH
Confidence 666655544 332 222356778778774 2456799999999999987632 268999999888999999
Q ss_pred HHHHHHHHH
Q 012363 448 QAVEILCKT 456 (465)
Q Consensus 448 ~~l~~l~~~ 456 (465)
+++++|+++
T Consensus 375 ~~~~~l~~~ 383 (384)
T 1bs0_A 375 RLLEVLHGN 383 (384)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999999764
No 54
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=100.00 E-value=6.1e-34 Score=285.81 Aligned_cols=336 Identities=15% Similarity=0.113 Sum_probs=240.1
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCC----CCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHH
Q 012363 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM----YYSIPQIELAKRLVACSF----ADRVFFSNTGTEAN 168 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~----~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~ 168 (465)
|+++|||.++.+. ..||++|.+.+++.+++++......+ ...+.++++++++.+.++ .++|++|+||++|+
T Consensus 33 g~~~idl~~g~~~-~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~ 111 (407)
T 2zc0_A 33 GVKLISLAAGDPD-PELIPRAVLGEIAKEVLEKEPKSVMYTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGAL 111 (407)
T ss_dssp SCCCEECCSCCCC-TTTSCHHHHHHHHHHHHHHCGGGGSCCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHH
T ss_pred CCceEeCCCCCCC-chhCCHHHHHHHHHHHHhhccccccCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHH
Confidence 7789999988764 34788999999999998763211111 112335555555544335 67899999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC----CCHHHHHhhcC-
Q 012363 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY----GNIEATRKLIQ- 243 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~- 243 (465)
..+++.+.. ++++|++.+|+||++...+...+.. +..+|. .|+++|+++++
T Consensus 112 ~~~~~~~~~-----------~gd~vl~~~p~~~~~~~~~~~~g~~-------------~~~v~~~~~~~d~~~l~~~l~~ 167 (407)
T 2zc0_A 112 DLLGRVLID-----------PGDVVITENPSYINTLLAFEQLGAK-------------IEGVPVDNDGMRVDLLEEKIKE 167 (407)
T ss_dssp HHHHHHHCC-----------TTCEEEEEESCCHHHHHHHHTTTCE-------------EEEEEEETTEECHHHHHHHHHH
T ss_pred HHHHHHhcC-----------CCCEEEEeCCChHHHHHHHHHcCCE-------------EEEcccCCCCCCHHHHHHHHHh
Confidence 999997741 5789999999999986544332211 112221 28999999886
Q ss_pred ---C-CCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-cccccc---CCcccEEEec
Q 012363 244 ---P-GKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEHY---GIFPDIMTLA 314 (465)
Q Consensus 244 ---~-~~~a~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~~~~~---~~~pdi~t~s 314 (465)
+ .++++|++.+. ++++|. .++.+++++|.++|++||++||+||+|+++.+.|.. .....+ +...++.++|
T Consensus 168 ~~~~~~~~~~v~~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 246 (407)
T 2zc0_A 168 LKAKGQKVKLIYTIPTGQNPMGV-TMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLS 246 (407)
T ss_dssp HHHTTCCEEEEEECCSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEEST
T ss_pred hhcccCCceEEEECCCCCCCCCc-CCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccc
Confidence 4 35777755544 444555 468899999999999999999999999988665542 222222 3345677899
Q ss_pred ccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHh--c---CchHHHHHHHHHHHHHHHHHHHHHcC
Q 012363 315 KPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKI--S---NPAFLASVSKKGHYFKETLKQKLARN 389 (465)
Q Consensus 315 K~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~--~---~~~~~~~~~~~~~~l~~~l~~~~~~~ 389 (465)
|.+++|+|+|++++++++++.+.......+++.+++++.++.++|+.. . -+...++++++.+++.+.|++. .
T Consensus 247 K~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~ 323 (407)
T 2zc0_A 247 KVLGTGFRIGWIIAEGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENH---L 323 (407)
T ss_dssp TTTCTTSCCEEEECCHHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHH---C
T ss_pred cccCCCcceEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHh---C
Confidence 999989999999999999888865445566778999999999998754 1 1334555566666666666543 2
Q ss_pred CCcee-eeccceEEEEEec--CChHHHHHHHHHC-CceEeecC-------CCCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012363 390 PHVKD-VRGLGLIIGIEFD--VSATPVVDACRDS-GLLVLTAG-------KGNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 390 ~~~~~-~~~~g~~~~i~~~--~~~~~~~~~l~~~-Gv~v~~~~-------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
+.+.. .+..|.++++.++ .+..++.+.|.++ ||.+.++. ..+++|++++.. +++++++++++|+++++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~ 402 (407)
T 2zc0_A 324 PNAEFTKPIAGMFVMFFLPEGADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRP-SKEEIPIGIKKLAKLYK 402 (407)
T ss_dssp TTSCBCCCSBSSEEEEECSTTCCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSS-CTTHHHHHHHHHHHHHH
T ss_pred CCCEEecCCCcEEEEEEcCCCCCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHH
Confidence 22222 2345778888884 3577899999998 99998752 137899998876 89999999999999998
Q ss_pred Hhhh
Q 012363 459 VLDS 462 (465)
Q Consensus 459 ~~~~ 462 (465)
++.+
T Consensus 403 ~~~~ 406 (407)
T 2zc0_A 403 EKFG 406 (407)
T ss_dssp HHC-
T ss_pred HHhc
Confidence 7643
No 55
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=100.00 E-value=6.3e-35 Score=292.82 Aligned_cols=355 Identities=13% Similarity=0.071 Sum_probs=246.5
Q ss_pred EEEeeeccEEEeCCCC---EEEecccCcccccCCCCCHHHHHHHHHHHhhcc---cccCCCCCHHHHHHHHHHHhhcCC-
Q 012363 83 VLASGKGCKLYDAEGR---EYLDLSSGIAVNALGHGDADWIKAVVDQANVLT---HVSNMYYSIPQIELAKRLVACSFA- 155 (465)
Q Consensus 83 ~~~~~~G~~~~d~dG~---~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~la~~l~~~~~~- 155 (465)
++.+++|.++++.+++ ++|||.+|.+. +++ .+|.|++|+.+++.+.. +....+..+.++++++++++.++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~id~~~g~~~-~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~ 98 (407)
T 3nra_A 21 VRQSAAGLEALIRGAPIEGRPVDFSHGDVD-AHE-PTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAP 98 (407)
T ss_dssp ------CCTTTCCSCCCCSCCEETTSCCTT-TSC-CCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHhhhhHHHhhcCCCCCceeeecCcCCC-CCC-CcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 4567788777765555 59999987653 444 78999999999987532 212223445688899999888773
Q ss_pred ----CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCC--C-CCCce
Q 012363 156 ----DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEP--V-MPGVN 228 (465)
Q Consensus 156 ----~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~--~-~~~~~ 228 (465)
++|++|+||++|+..+++.+. .++++|++.+|+|+++...+...+...... +..+ . ..+..
T Consensus 99 ~~~~~~i~~~~g~~~a~~~~~~~l~-----------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~ 166 (407)
T 3nra_A 99 VDARDGLIITPGTQGALFLAVAATV-----------ARGDKVAIVQPDYFANRKLVEFFEGEMVPV-QLDYVSADETRAG 166 (407)
T ss_dssp CCTTTSEEEESHHHHHHHHHHHTTC-----------CTTCEEEEEESCCTHHHHHHHHTTCEEEEE-EBCCCSSCCSSCC
T ss_pred CCCCCcEEEeCCcHHHHHHHHHHhC-----------CCCCEEEEcCCcccchHHHHHHcCCEEEEe-ecccccccCcCCC
Confidence 799999999999999998653 168899999999998775554433221110 0000 0 00000
Q ss_pred EeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc-cccc----
Q 012363 229 FVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEH---- 303 (465)
Q Consensus 229 ~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~-~~~~---- 303 (465)
.|+++|+++++++..+++++.|. +++|. .++.+++++|+++|++||++||+||+|+++++.|..+ ....
T Consensus 167 ----~d~~~l~~~l~~~~~~v~~~~p~-nptG~-~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~ 240 (407)
T 3nra_A 167 ----LDLTGLEEAFKAGARVFLFSNPN-NPAGV-VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAV 240 (407)
T ss_dssp ----BCHHHHHHHHHTTCCEEEEESSC-TTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTS
T ss_pred ----cCHHHHHHHHhhCCcEEEEcCCC-CCCCc-ccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcc
Confidence 28999999997644455566664 44454 4588999999999999999999999999887666432 2222
Q ss_pred -cCCcccEEEecccCC-CccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Q 012363 304 -YGIFPDIMTLAKPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKET 381 (465)
Q Consensus 304 -~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~ 381 (465)
.+..+++.++||.++ +|+|+||+++++++++.+.......+++.++++++++.++|+. .+++.++..+....+++.
T Consensus 241 ~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~~ 318 (407)
T 3nra_A 241 DAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDE--APGWMEDRIARHQAIRDE 318 (407)
T ss_dssp CGGGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCC--CTTHHHHHHHHHHHHHHH
T ss_pred cCCcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHHHHhhhccCCChHHHHHHHHHHhc--cchHHHHHHHHHHHHHHH
Confidence 233455668999999 6899999999999998886555556677888888887777752 234445555555555666
Q ss_pred HHHHHHcCCCceeeecc-ceEEEEEec---CChHHHHHHHHH-CCceEeecC-----CCCEEEEecCCCCcHHHHHHHHH
Q 012363 382 LKQKLARNPHVKDVRGL-GLIIGIEFD---VSATPVVDACRD-SGLLVLTAG-----KGNVVRLVPPLIISEQELDQAVE 451 (465)
Q Consensus 382 l~~~~~~~~~~~~~~~~-g~~~~i~~~---~~~~~~~~~l~~-~Gv~v~~~~-----~~~~lRi~~~~~~t~e~i~~~l~ 451 (465)
|.+.+.+++.+....+. |.++++.+. .+..++.+.|++ +||++.++. ..+++|++++. ++++|+++++
T Consensus 319 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~--~~~~i~~~~~ 396 (407)
T 3nra_A 319 LLHVLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ--DHEAAVAAAR 396 (407)
T ss_dssp HHHHHHTSTTCBCCCCSBSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCS--CHHHHHHHHH
T ss_pred HHHHHhcCCCceeccCCeeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCC--CHHHHHHHHH
Confidence 66666666544443333 577777763 356789999976 599998753 14789998874 8999999999
Q ss_pred HHHHHHHHhh
Q 012363 452 ILCKTLPVLD 461 (465)
Q Consensus 452 ~l~~~l~~~~ 461 (465)
+|++++++++
T Consensus 397 ~l~~~~~~~~ 406 (407)
T 3nra_A 397 RIVTLVERYR 406 (407)
T ss_dssp HHHHHHHHHB
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 56
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=100.00 E-value=7.1e-34 Score=284.21 Aligned_cols=348 Identities=16% Similarity=0.037 Sum_probs=247.1
Q ss_pred CCceEEEeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHHhhcC---
Q 012363 79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF--- 154 (465)
Q Consensus 79 ~~p~~~~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~~~--- 154 (465)
+.|+....+.+.+++|.+|+++|||.++.. .++ .+|.|++++.+++.....+.. .+..+.++++++++.+.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~ 87 (396)
T 3jtx_A 11 PYPFARLHEAMQGISAPEGMEAVPLHIGEP--KHP-TPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLT 87 (396)
T ss_dssp SCHHHHHHHHTTTCCCCTTCCCEECSCCSC--CSC-CCHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHHTTTCC
T ss_pred CChHHHHHHHHHhhhhccCCCeEEeCCcCC--CCC-CCHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHhcCCCC
Confidence 344444456777788899999999999875 455 689999999998864333222 1234557788888877654
Q ss_pred --CC-eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC-----ceEEEEcCCcccCccccccccCCCCcCCCCCCCC-C
Q 012363 155 --AD-RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA-----TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM-P 225 (465)
Q Consensus 155 --~~-~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~-----~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-~ 225 (465)
.+ +|++|+||++|+..+++.+.. ++ +.|++.+|+||++...+...+...... +.. .
T Consensus 88 ~~~~~~i~~t~g~~~al~~~~~~~~~-----------~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v----~~~~~ 152 (396)
T 3jtx_A 88 VDADNEILPVLGSREALFSFVQTVLN-----------PVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFA----NCPAP 152 (396)
T ss_dssp CCTTTSEEEESSHHHHHHHHHHHHCC-----------C---CCCCEEEEEESCCHHHHHHHHHTTCEEEEE----ECCTT
T ss_pred CCCCCeEEEcCCcHHHHHHHHHHHhC-----------CCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEe----ecCCC
Confidence 56 999999999999999997752 33 699999999999876554443222111 111 1
Q ss_pred CceEeeCCCHHHHHhhcCCCCeEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCC-cccccc-
Q 012363 226 GVNFVEYGNIEATRKLIQPGKTAAVF-VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG-YLWAHE- 302 (465)
Q Consensus 226 ~~~~~~~~d~~~le~~l~~~~~a~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g-~~~~~~- 302 (465)
+.. .|+++|++++++ ++++|+ ++|.| ++|. .++.+.+++|.++|++||++||+||+|++|.+.| ......
T Consensus 153 g~~----~d~~~l~~~~~~-~~~~v~l~~p~n-ptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~ 225 (396)
T 3jtx_A 153 SFN----PDWRSISEEVWK-RTKLVFVCSPNN-PSGS-VLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQ 225 (396)
T ss_dssp TCC----CCGGGSCHHHHH-TEEEEEEESSCT-TTCC-CCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHH
T ss_pred CCc----cCHHHHHHhhcc-CcEEEEEECCCC-CCCC-cCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHh
Confidence 111 177888888865 455555 45544 4444 4578889999999999999999999999987766 332221
Q ss_pred -------ccCCcccEEEecccCC-CccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHH
Q 012363 303 -------HYGIFPDIMTLAKPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKK 374 (465)
Q Consensus 303 -------~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~ 374 (465)
..+..+++.++||.++ +|+|+||+++++++++.+.......+++.++++++++.++|+. ++..++.++.
T Consensus 226 ~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~ 302 (396)
T 3jtx_A 226 AAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWDD---EQHVIDNRRL 302 (396)
T ss_dssp HHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHC---CHHHHHHHHH
T ss_pred hhhhcccccCcEEEEeccccccCCcccceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHhCC---HHHHHHHHHH
Confidence 1456677889999987 4899999999999998886544556778899999999999873 4455555555
Q ss_pred HHHHHHHHHHHHHcCCCceeeeccceEEEEEec-CChHHHHHHHHH-CCceEeecC-----------CCCEEEEecCCCC
Q 012363 375 GHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD-VSATPVVDACRD-SGLLVLTAG-----------KGNVVRLVPPLII 441 (465)
Q Consensus 375 ~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~-~~~~~~~~~l~~-~Gv~v~~~~-----------~~~~lRi~~~~~~ 441 (465)
....++.+.+.+.++..+ ..+..|.++++.++ .+..++++.|++ +||.+.++. ..+++||+++.
T Consensus 303 ~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~-- 379 (396)
T 3jtx_A 303 YQEKFERVIPILQQVFDV-KLPDASFYIWLKVPDGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA-- 379 (396)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS--
T ss_pred HHHHHHHHHHHHHhcCCc-cCCCeeEEEEEECCCCCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC--
Confidence 555555555555543211 22344778888885 367788998864 699998752 13789998764
Q ss_pred cHHHHHHHHHHHHHHH
Q 012363 442 SEQELDQAVEILCKTL 457 (465)
Q Consensus 442 t~e~i~~~l~~l~~~l 457 (465)
+++++++++++|++++
T Consensus 380 ~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 380 DVATCVKAAEDIVSLY 395 (396)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999998764
No 57
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=100.00 E-value=1.8e-33 Score=277.01 Aligned_cols=329 Identities=14% Similarity=0.085 Sum_probs=240.0
Q ss_pred eeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCH
Q 012363 87 GKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTG 164 (465)
Q Consensus 87 ~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG 164 (465)
.+|.++++.+|+++|||.++.. +++ .+|+|++++.+++... ..|+.....+++++++++++ .++|++++||
T Consensus 5 ~~~~~~~~~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~ 77 (354)
T 3ly1_A 5 PESAAFTAPSTDNPIRINFNEN--PLG-MSPKAQAAARDAVVKA----NRYAKNEILMLGNKLAAHHQVEAPSILLTAGS 77 (354)
T ss_dssp ----CCCCCCSSSCEECSSCCC--SSC-CCHHHHHHHHHTGGGT----TSCCHHHHHHHHHHHHHHTTSCGGGEEEESHH
T ss_pred cccccccCCCCCceEEccCCCC--CCC-CCHHHHHHHHHHHhhC----cCCCCCchHHHHHHHHHHhCCChHHEEEeCCh
Confidence 4567788899999999999864 555 7899999999988752 33455667899999999988 6899999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC-----CHHHHH
Q 012363 165 TEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATR 239 (465)
Q Consensus 165 ~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le 239 (465)
++|+..+++.+. .++++|++.+|+|+++...+...+.. +..+|.+ |+++|+
T Consensus 78 ~~a~~~~~~~l~-----------~~gd~vl~~~~~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~d~~~l~ 133 (354)
T 3ly1_A 78 SEGIRAAIEAYA-----------SLEAQLVIPELTYGDGEHFAKIAGMK-------------VTKVKMLDNWAFDIEGLK 133 (354)
T ss_dssp HHHHHHHHHHHC-----------CTTCEEEEESSSCTHHHHHHHHTTCE-------------EEEECCCTTSCCCHHHHH
T ss_pred HHHHHHHHHHHh-----------CCCCeEEECCCCchHHHHHHHHcCCE-------------EEEecCCCCCCCCHHHHH
Confidence 999999999764 16889999999999887554443322 1222222 899999
Q ss_pred hhcCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc-c---cccc-CCcccEEEe
Q 012363 240 KLIQP-GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-A---HEHY-GIFPDIMTL 313 (465)
Q Consensus 240 ~~l~~-~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~-~---~~~~-~~~pdi~t~ 313 (465)
++++. .++++|+++..++++|.+ .+.+.+++|+++| +||+++|+||+|.++.+.+... . .... +....+.++
T Consensus 134 ~~l~~~~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 211 (354)
T 3ly1_A 134 AAVAAYSGPSIVYLVNPNNPTGTI-TPADVIEPWIASK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTF 211 (354)
T ss_dssp HHHHTCSSCEEEEEESSCTTTCCC-CCHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEES
T ss_pred HHhccCCCCCEEEEeCCCCCcCCC-cCHHHHHHHHHhC-CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeC
Confidence 99972 355666554444445544 4777888888888 7999999999999886665321 1 1222 444556689
Q ss_pred cccCC-CccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012363 314 AKPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS-NPAFLASVSKKGHYFKETLKQKLARNPH 391 (465)
Q Consensus 314 sK~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 391 (465)
||.++ +|+|+|++++++++++.+..... .++.|+++++++.++|+... -++..++++++.+++.+.|++. +
T Consensus 212 sK~~g~~G~r~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----~- 284 (354)
T 3ly1_A 212 SKIHAMAGMRVGYAVAHPTVIALMGRYVA--GEKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDL----K- 284 (354)
T ss_dssp SSTTCCGGGCCEEEECCHHHHHHHGGGTT--CSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH----T-
T ss_pred hhhccChhhhheeeecCHHHHHHHHHhcC--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC----C-
Confidence 99998 69999999999999998875432 37889999999998887321 1223344444555555555443 3
Q ss_pred ceeeeccceEEEEEecCChHHHHHHHHHCCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012363 392 VKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 392 ~~~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
+...++.|.++++.++.+..++.+.|.++||.+. +. ..+++|++++ +++++++++++|++++++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~-g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 285 LPYLPSEGNFVFHQLVVPLKDYQTHMADAGVLIG-RAFPPADNWCRISLG---TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp CCBCCCCSSEEEEECSSCHHHHHHHHHHTTEECC-CCCTTCTTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred CeECCCCceEEEEECCCCHHHHHHHHHHCCEEEe-ecCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHHh
Confidence 2334567889888886577889999999999987 32 2478999854 789999999999998864
No 58
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=100.00 E-value=4e-33 Score=275.14 Aligned_cols=338 Identities=14% Similarity=0.118 Sum_probs=235.5
Q ss_pred ceEEEeeeccEEEe-CCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCe
Q 012363 81 PVVLASGKGCKLYD-AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADR 157 (465)
Q Consensus 81 p~~~~~~~G~~~~d-~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~ 157 (465)
++++.+|.+.+.++ .+|+++|||.++.. +++ .+|.|++++.++++.... +++....+++++++++++ .++
T Consensus 8 ~~~~~~g~~~~~~~~~~~~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~~~----y~~~~~~~l~~~la~~~~~~~~~ 80 (361)
T 3ftb_A 8 GDLMIHGGDIYTEGVFKGRELLDYSSNIN--PLG-IPKSFLNNIDEGIKNLGV----YPDVNYRRLNKSIENYLKLKDIG 80 (361)
T ss_dssp --------------------CEETTCCCC--TTC-SCHHHHTTHHHHHHGGGS----CCCTTCHHHHHHHHHHHTCCSCE
T ss_pred CccccCCCCHHHHhhcCCCCEEEecCCCC--CCC-CCHHHHHHHHHHHHHhcC----CCCccHHHHHHHHHHHhCCCcce
Confidence 34555555544444 48999999999865 455 689999999999876422 344446788888988887 689
Q ss_pred EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHH
Q 012363 158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEA 237 (465)
Q Consensus 158 v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 237 (465)
|++|+||++|+..+++.+ ++|++.+|+||++...+...+...... +...+.. -++++
T Consensus 81 i~~~~g~t~al~~~~~~~---------------d~vi~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~----~~~~~ 137 (361)
T 3ftb_A 81 IVLGNGASEIIELSISLF---------------EKILIIVPSYAEYEINAKKHGVSVVFS----YLDENMC----IDYED 137 (361)
T ss_dssp EEEESSHHHHHHHHHTTC---------------SEEEEEESCCTHHHHHHHHTTCEEEEE----ECCTTSC----CCHHH
T ss_pred EEEcCCHHHHHHHHHHHc---------------CcEEEecCChHHHHHHHHHcCCeEEEe----ecCcccC----CCHHH
Confidence 999999999999988844 479999999999876554443222111 1111111 26799
Q ss_pred HHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCc---ccEEEec
Q 012363 238 TRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIF---PDIMTLA 314 (465)
Q Consensus 238 le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~---pdi~t~s 314 (465)
+++++++ ..++++++|.|++ |. .++.+.+++|+++|++||+++|+||+|+++.+.+........+.. ..+.++|
T Consensus 138 l~~~l~~-~~~v~i~~p~npt-G~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 214 (361)
T 3ftb_A 138 IISKIDD-VDSVIIGNPNNPN-GG-LINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMT 214 (361)
T ss_dssp HHHHTTT-CSEEEEETTBTTT-TB-CCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESS
T ss_pred HHHhccC-CCEEEEeCCCCCC-CC-CCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeCh
Confidence 9999986 4555566665554 44 458888999999999999999999999988654211222222222 2344789
Q ss_pred ccCC-CccceeeEE-eCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 012363 315 KPLA-GGLPIGAAL-VTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHV 392 (465)
Q Consensus 315 K~lg-~G~~iG~v~-~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 392 (465)
|.++ +|+|+|+++ +++++++.+... ..+++.|+++++++.++|+ +.+..++.++.....++.+.+.+.++|.+
T Consensus 215 K~~~~~G~r~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 289 (361)
T 3ftb_A 215 KFFAMPGIRFGYGITNNKEIAAKIKAK--QNPWNINCFAEMAAINCLK---DTNYIEESLLWIKKERKRFIEELNKIGFI 289 (361)
T ss_dssp STTSCGGGCCEEEEESCHHHHHHHHTT--SCTTCSCHHHHHHHHHTSS---CHHHHHHHHHHHHHHHHHHHHHHHHSSSE
T ss_pred hhcCCCCcceeEEEeCCHHHHHHHHhh--CCCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9998 689999998 899999988743 3467889999999988887 34556666666666667776666677766
Q ss_pred e-eeeccceEEEEEecC-ChHHHHHHHHHCCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012363 393 K-DVRGLGLIIGIEFDV-SATPVVDACRDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 393 ~-~~~~~g~~~~i~~~~-~~~~~~~~l~~~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
. ..++.|.++++.++. +..++.+.|.++||.+.++.. ++++|++++ +.++++++++.|+++.+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~~~~ 360 (361)
T 3ftb_A 290 KRVFSPHANFVLCRLENISGEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK---DEKKNTKFLRALKGVENN 360 (361)
T ss_dssp EEEECCSSSEEEEEESSSCHHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred ceecCCCCeEEEEEcCCCCHHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHhc
Confidence 6 677889999988853 678899999999999988531 478999865 788888888888877653
No 59
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=100.00 E-value=4.8e-34 Score=285.77 Aligned_cols=337 Identities=14% Similarity=0.097 Sum_probs=236.0
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCC-HHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHH
Q 012363 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS-IPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIK 173 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~-~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~ 173 (465)
++++|||.++.+. ..||++|.+.+++.+++++.......|.. ....++++.++++++ .++|++++||++|+..+++
T Consensus 31 ~~~~i~l~~g~~~-~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~ 109 (397)
T 2zyj_A 31 RPGILSFAGGLPA-PELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGK 109 (397)
T ss_dssp STTCEEESSCCCC-GGGCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHH
T ss_pred CCCceecCCCCCC-chhCCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHH
Confidence 4568999888754 35788999999999988753211112222 235677777777776 5799999999999999999
Q ss_pred HHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC----CCHHHHHhhcCCCCeEE
Q 012363 174 FARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY----GNIEATRKLIQPGKTAA 249 (465)
Q Consensus 174 ~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~~~~~a~ 249 (465)
++. .++++|++.+|+||++...+...+.. +..+|. .|+++|++++++.++++
T Consensus 110 ~~~-----------~~gd~Vl~~~p~y~~~~~~~~~~g~~-------------~~~~~~~~~~~d~~~l~~~l~~~~~~~ 165 (397)
T 2zyj_A 110 VFL-----------DEGSPVLLEAPSYMGAIQAFRLQGPR-------------FLTVPAGEEGPDLDALEEVLKRERPRF 165 (397)
T ss_dssp HHC-----------CTTCEEEEEESCCHHHHHHHHTTCCE-------------EEEEEEETTEECHHHHHHHHHHCCCSC
T ss_pred HhC-----------CCCCEEEEeCCCcHHHHHHHHHcCCE-------------EEecCcCCCCCCHHHHHHHHhhcCCeE
Confidence 764 15789999999999987654433221 111221 28999999986434566
Q ss_pred EEEcc-cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-cccccc------CCcccEEEecccCCCcc
Q 012363 250 VFVEP-IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEHY------GIFPDIMTLAKPLAGGL 321 (465)
Q Consensus 250 vi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~~~~~------~~~pdi~t~sK~lg~G~ 321 (465)
|++.+ .++++|. .++.+++++|.++|++||++||+||+|+++.+.|.. .....+ +....+.++||++++|+
T Consensus 166 v~~~~~~~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~ 244 (397)
T 2zyj_A 166 LYLIPSFQNPTGG-LTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPGL 244 (397)
T ss_dssp EEECCBSCTTTCC-BCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGGG
T ss_pred EEECCCCcCCCCC-cCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEecccccccccc
Confidence 54333 3333454 468899999999999999999999999998766642 222222 23344668999999889
Q ss_pred ceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHc-CC-Ccee-eecc
Q 012363 322 PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLAR-NP-HVKD-VRGL 398 (465)
Q Consensus 322 ~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~-~~~~-~~~~ 398 (465)
|+||+++++++++.+.......+++.|+++++++.++|+.... +..++.++.....++.+.+.+.+ .| .+.. .+..
T Consensus 245 r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~ 323 (397)
T 2zyj_A 245 RVAFAVAHPEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFS-ERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKG 323 (397)
T ss_dssp CCEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHH-HHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSB
T ss_pred eeEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCc
Confidence 9999999999988876544445567799999998888874211 23333333333333444443333 33 2333 2355
Q ss_pred ceEEEEEec--CChHHHHHHHHHCCceEeecC-------CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012363 399 GLIIGIEFD--VSATPVVDACRDSGLLVLTAG-------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 399 g~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~-------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
|.+++++++ .+..++.+.|.++||.+.++. ..+++||+++.. +++++++++++|+++++++.
T Consensus 324 g~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~ 394 (397)
T 2zyj_A 324 GMFVWMELPKGLSAEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATL-DREGIAEGVRRLGRALKGLL 394 (397)
T ss_dssp SSEEEEECSTTCCHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 788888884 357789999999999998752 237899998875 89999999999999998764
No 60
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=7.3e-34 Score=287.12 Aligned_cols=344 Identities=12% Similarity=0.103 Sum_probs=239.6
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcc----cc-cCCCCCHHHHHHHHHHHhhcC-----CCeEEecCCHHH
Q 012363 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT----HV-SNMYYSIPQIELAKRLVACSF-----ADRVFFSNTGTE 166 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~----~~-~~~~~~~~~~~la~~l~~~~~-----~~~v~~~~sG~e 166 (465)
++++|||.++.+.. .||++|.+.+++.++++... .+ ...+..+.++++++++.+.++ .++|++|+||++
T Consensus 42 ~~~~idl~~g~~~~-~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~ 120 (425)
T 1vp4_A 42 DKDAISFGGGVPDP-ETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQ 120 (425)
T ss_dssp STTCEECCCCSCCG-GGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHH
T ss_pred CCCceeCCCCCCCc-ccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHH
Confidence 45789999987643 58899999999999887521 11 111223345666666655434 468999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC--
Q 012363 167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP-- 244 (465)
Q Consensus 167 A~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-- 244 (465)
|+..+++++. + ++++|++.+|+||++...+...+.... . .+...+ . .|+++|++++++
T Consensus 121 al~~~~~~l~---~--------~gd~Vl~~~p~y~~~~~~~~~~g~~~~-~---v~~~~~-~----~d~~~l~~~l~~~~ 180 (425)
T 1vp4_A 121 ALDLIGKLFL---D--------DESYCVLDDPAYLGAINAFRQYLANFV-V---VPLEDD-G----MDLNVLERKLSEFD 180 (425)
T ss_dssp HHHHHHHHHC---C--------TTCEEEEEESCCHHHHHHHHTTTCEEE-E---EEEETT-E----ECHHHHHHHHHHHH
T ss_pred HHHHHHHHhC---C--------CCCEEEEeCCCcHHHHHHHHHcCCEEE-E---eccCCC-C----CCHHHHHHHHHhhh
Confidence 9999999664 1 578999999999998765544332111 0 011111 0 289999998864
Q ss_pred -----CCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-ccccc---cCCcccEEEec
Q 012363 245 -----GKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEH---YGIFPDIMTLA 314 (465)
Q Consensus 245 -----~~~a~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~~~~---~~~~pdi~t~s 314 (465)
.++++|++.|+ ++++|. .++.+++++|.++|++||++||+||+|++|.+.|.. ..... .+....+.++|
T Consensus 181 ~~~~~~~~~~v~~~~~~~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~s 259 (425)
T 1vp4_A 181 KNGKIKQVKFIYVVSNFHNPAGV-TTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFS 259 (425)
T ss_dssp HTTCGGGEEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEEST
T ss_pred hcccCCCceEEEECCCCCCCCCC-cCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccc
Confidence 25777754443 333344 468899999999999999999999999998665542 22222 23334466899
Q ss_pred ccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcC----chHHHHHHHHHHHHHHHHHHHHHcCC
Q 012363 315 KPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN----PAFLASVSKKGHYFKETLKQKLARNP 390 (465)
Q Consensus 315 K~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~ 390 (465)
|++++|+|+||+++++++++.+.......+++.|+++++++.++|+.... +...++++++.+++.+.|++.+..++
T Consensus 260 K~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 339 (425)
T 1vp4_A 260 KVLAPGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIP 339 (425)
T ss_dssp TTTCGGGCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTST
T ss_pred cccccccceEEEeeCHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99998899999999999988876544445567799999999999986421 23344455555666666555322111
Q ss_pred Cceee-eccceEEEEEec--CChHHHHHHHHHCCceEeecC-------CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012363 391 HVKDV-RGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAG-------KGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 391 ~~~~~-~~~g~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~-------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
.+..+ +..|.++++.++ .+..++.+.|.++||.+.++. ..+++||+++.. +++++++++++|+++++++
T Consensus 340 g~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~e~i~~~l~~l~~~l~~~ 418 (425)
T 1vp4_A 340 GVKWVKSEGGLFIWLTLPEGFDTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLP-PDEKIVEGIKRLREVVLEY 418 (425)
T ss_dssp TCEECCCSBSSEEEEECCTTCCTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred ceEEecCCccEEEEEEcCCCCCHHHHHHHHHHCCCEEECchhhcCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHH
Confidence 23332 455778888884 246678999999999998752 137899998864 8999999999999999887
Q ss_pred hhc
Q 012363 461 DSN 463 (465)
Q Consensus 461 ~~~ 463 (465)
.++
T Consensus 419 ~~~ 421 (425)
T 1vp4_A 419 GKE 421 (425)
T ss_dssp HHH
T ss_pred Hhh
Confidence 654
No 61
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=100.00 E-value=2.9e-33 Score=277.01 Aligned_cols=328 Identities=14% Similarity=0.101 Sum_probs=242.7
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCC---CeEEecCCHHHHHHHHHH
Q 012363 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA---DRVFFSNTGTEANEAAIK 173 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~---~~v~~~~sG~eA~~~al~ 173 (465)
.+.+|||.++. ++++ .+|+|++++.+++..... ..|+.....+++++++++++. ++|++|+||++|+..+++
T Consensus 29 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~--~~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~ 103 (367)
T 3euc_A 29 SHGLVKLDAME--NPYR-LPPALRSELAARLGEVAL--NRYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLAL 103 (367)
T ss_dssp CTTCEECCSSC--CCCC-CCHHHHHHHHHHHHHHHT--TCSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHH
T ss_pred CCCeeEccCCC--CCCC-CCHHHHHHHHHHhhhhhh--hcCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHH
Confidence 36789999886 3555 789999999998875311 234444577899999998874 799999999999999998
Q ss_pred HHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEc
Q 012363 174 FARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE 253 (465)
Q Consensus 174 ~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~e 253 (465)
.+. .++++|++.+|+|+++...+...+...... +...+. ..|+++|+++++++++++|+++
T Consensus 104 ~~~-----------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v----~~~~~~----~~d~~~l~~~l~~~~~~~v~~~ 164 (367)
T 3euc_A 104 AAA-----------RPGAKVMAPVPGFVMYAMSAQFAGLEFVGV----PLRADF----TLDRGAMLAAMAEHQPAIVYLA 164 (367)
T ss_dssp HTC-----------CTTCEEEEEESCSCCSCHHHHTTTCEEEEE----ECCTTS----CCCHHHHHHHHHHHCCSEEEEE
T ss_pred HHc-----------CCCCEEEEcCCCHHHHHHHHHHcCCeEEEe----cCCCCC----CCCHHHHHHHhhccCCCEEEEc
Confidence 664 158899999999999876554433221111 111111 1289999999975245566555
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHh--CCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHH
Q 012363 254 PIQGEGGIYSATKEFLQFLRDACDDA--GALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEK 331 (465)
Q Consensus 254 p~~~~~G~~~~~~~~l~~l~~l~~~~--g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~ 331 (465)
..++.+|.+ ++.+.+++|.++|++| |+++|+||+|++|+..+........+..+++.++||...+|+|+||++++++
T Consensus 165 ~~~nptG~~-~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~ 243 (367)
T 3euc_A 165 YPNNPTGNL-FDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKLGLAGIRLGYVAGDPQ 243 (367)
T ss_dssp SSCTTTCCC-CCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCTTSCSCCEEEEEECHH
T ss_pred CCCCCCCCC-CCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhhcccccCceeeeeCHH
Confidence 444545554 4788899999999999 9999999999988654433344445556777899999335899999999999
Q ss_pred HHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCChH
Q 012363 332 VASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSAT 411 (465)
Q Consensus 332 i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~ 411 (465)
+++.+... ..+++.|+++++++.++|+. .++.++.++....+++.+.+.+.++|.+...++.|.++++.++ +..
T Consensus 244 ~~~~~~~~--~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~-~~~ 317 (367)
T 3euc_A 244 WLEQLDKV--RPPYNVNVLTEATALFALEH---VAVLDEQAAQLRAERSRVAEGMAAHGGVTVFPSAANFLLARVP-DAA 317 (367)
T ss_dssp HHHHHGGG--CCSSCCCHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHTSTTCEECCCSSSEEEEECS-CHH
T ss_pred HHHHHHHh--CCCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCCCCeEEEEECC-CHH
Confidence 99888743 34677899999999999874 3445555555566666666666666655566777889888886 778
Q ss_pred HHHHHHHHCCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012363 412 PVVDACRDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 412 ~~~~~l~~~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
++.+.|.++||.+.++.. .+++|++++ +++|+++++++|+++++
T Consensus 318 ~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 318 QTFDRLLARKVLIKNVSKMHPLLANCLRVTVS---TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp HHHHHHHTTTEECEECGGGCGGGTTEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCeEEEECCccCCCCCCEEEEecC---CHHHHHHHHHHHHHHhc
Confidence 899999999999987542 478999855 89999999999988763
No 62
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=100.00 E-value=5.1e-33 Score=281.18 Aligned_cols=338 Identities=16% Similarity=0.109 Sum_probs=237.0
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhc---ccccCC--CCCHHHHHHHHHHHhhcC----CC-eEEecCCHHHHH
Q 012363 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVL---THVSNM--YYSIPQIELAKRLVACSF----AD-RVFFSNTGTEAN 168 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~---~~~~~~--~~~~~~~~la~~l~~~~~----~~-~v~~~~sG~eA~ 168 (465)
.+|||.++.+ .+| .+|.+.+++.+++++. .+.+.. +..+.++++++++.+.++ .+ +|++++||++|+
T Consensus 38 ~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~ 114 (429)
T 1yiz_A 38 KPLNLGQGFP--DYH-APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEAL 114 (429)
T ss_dssp CCEECCSSSC--SSC-CCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred CEEEecCCCC--CCC-CCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHH
Confidence 4789988865 567 6899999999998752 111111 122345666666655444 56 999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCC-----ceEeeC-CCHHHHHhhc
Q 012363 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPG-----VNFVEY-GNIEATRKLI 242 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~d~~~le~~l 242 (465)
..+++++. .++++|++.+|+||++...+...+..... .+...+ +....+ .|+++|++++
T Consensus 115 ~~~~~~~~-----------~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~d~~~l~~~l 179 (429)
T 1yiz_A 115 YATIQGHV-----------DEGDEVIIIEPFFDCYEPMVKAAGGIPRF----IPLKPNKTGGTISSADWVLDNNELEALF 179 (429)
T ss_dssp HHHHHHHC-----------CTTCEEEEEESCCTTHHHHHHHTTCEEEE----EECBCCCSSSSEEGGGCBCCHHHHHHHC
T ss_pred HHHHHHhc-----------CCCCEEEEcCCCchhHHHHHHHcCCEEEE----EeCCcccccccccccCcccCHHHHHHHh
Confidence 99999764 15789999999999987654433321111 111111 000011 3899999999
Q ss_pred CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-cccc----ccCCcccEEEecccC
Q 012363 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHE----HYGIFPDIMTLAKPL 317 (465)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~~~----~~~~~pdi~t~sK~l 317 (465)
++ ++++|++++.++++|.+ ++++++++|+++|++||++||+||+|++|++.|.. ..+. ..+..+++.++||.+
T Consensus 180 ~~-~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~ 257 (429)
T 1yiz_A 180 NE-KTKMIIINTPHNPLGKV-MDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTF 257 (429)
T ss_dssp CT-TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHH
T ss_pred cc-CceEEEECCCCCCCCcc-CCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhcc
Confidence 74 57777766666666654 57899999999999999999999999998766541 1121 234556677899999
Q ss_pred C-CccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHH-----hcCchHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012363 318 A-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK-----ISNPAFLASVSKKGHYFKETLKQKLARNPH 391 (465)
Q Consensus 318 g-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~-----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 391 (465)
+ +|+|+|++++++++++.+....+..+++.++++++++.++|+. ...+++.+++++..+..++.|.+.+.+++.
T Consensus 258 ~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 337 (429)
T 1yiz_A 258 SLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGM 337 (429)
T ss_dssp TCGGGCCEEEESCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCcceEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8 6899999999999998886544556888999999999999987 433455555555555555555544444443
Q ss_pred ceeeeccceEEEEEecC--------------ChHHHHHHHH-HCCceEeecC----------CCCEEEEecCCCCcHHHH
Q 012363 392 VKDVRGLGLIIGIEFDV--------------SATPVVDACR-DSGLLVLTAG----------KGNVVRLVPPLIISEQEL 446 (465)
Q Consensus 392 ~~~~~~~g~~~~i~~~~--------------~~~~~~~~l~-~~Gv~v~~~~----------~~~~lRi~~~~~~t~e~i 446 (465)
....+..|.+++++++. +..++.+.|+ ++||++.++. .++++||+++ .++++|
T Consensus 338 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~--~~~e~i 415 (429)
T 1yiz_A 338 NPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF--KKDENL 415 (429)
T ss_dssp EEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECC--SCHHHH
T ss_pred cccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEec--CCHHHH
Confidence 22233347788888842 2457888887 7999998752 0368999887 489999
Q ss_pred HHHHHHHHHHHH
Q 012363 447 DQAVEILCKTLP 458 (465)
Q Consensus 447 ~~~l~~l~~~l~ 458 (465)
++++++|+++++
T Consensus 416 ~~~l~~l~~~l~ 427 (429)
T 1yiz_A 416 QKAAEILRKWKG 427 (429)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHhcc
Confidence 999999998764
No 63
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=100.00 E-value=1.2e-32 Score=278.37 Aligned_cols=344 Identities=13% Similarity=0.104 Sum_probs=239.2
Q ss_pred EeCCCCEEEecccCcccc-cCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC-------CCeEEecCCH
Q 012363 93 YDAEGREYLDLSSGIAVN-ALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-------ADRVFFSNTG 164 (465)
Q Consensus 93 ~d~dG~~ylD~~~~~~~~-~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-------~~~v~~~~sG 164 (465)
.+.+|+.+|||..+.+.. .-.+.+|.|++|+.+++..... ..+.+.....++++.++++++ .++|++|+||
T Consensus 49 ~~~~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~-~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~ 127 (427)
T 3dyd_A 49 KPNPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKY-NGYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSGC 127 (427)
T ss_dssp CCCTTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCS-SSCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSH
T ss_pred cccCCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcC-CCCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecCc
Confidence 345688999999987532 1124789999999999876321 111122334566666666554 6799999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCC--CceEeeCCCHHHHHhhc
Q 012363 165 TEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP--GVNFVEYGNIEATRKLI 242 (465)
Q Consensus 165 ~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~le~~l 242 (465)
++|+..+++.+.. ++++|++.+|+|+++...+...+...... +..+ +.. -|+++|++++
T Consensus 128 t~al~~~~~~l~~-----------~gd~vl~~~p~~~~~~~~~~~~g~~~~~~----~~~~~~~~~----~d~~~l~~~l 188 (427)
T 3dyd_A 128 SQAIDLCLAVLAN-----------PGQNILVPRPGFSLYKTLAESMGIEVKLY----NLLPEKSWE----IDLKQLEYLI 188 (427)
T ss_dssp HHHHHHHHHHHCC-----------TTCEEEEEESCCTHHHHHHHHTTCEEEEE----EEEGGGTTE----ECHHHHHSSC
T ss_pred HHHHHHHHHHhcC-----------CCCEEEEcCCCchhHHHHHHHcCCEEEEE----ecccccCCC----CCHHHHHHHh
Confidence 9999999997752 68899999999998876554433221110 1000 001 1899999999
Q ss_pred CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc-cccccCCcccEE---EecccCC
Q 012363 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHYGIFPDIM---TLAKPLA 318 (465)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~-~~~~~~~~pdi~---t~sK~lg 318 (465)
+++..++++++| ++++|. .++++++++|+++|++||+++|+||+|++|++.|..+ ....++..++++ ++||.++
T Consensus 189 ~~~~~~v~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~ 266 (427)
T 3dyd_A 189 DEKTACLIVNNP-SNPCGS-VFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWL 266 (427)
T ss_dssp CTTEEEEEEESS-CTTTCC-CCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSS
T ss_pred ccCCCEEEEECC-CCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCC
Confidence 764444555556 444454 5688999999999999999999999999998777532 344445455555 8999987
Q ss_pred C-ccceeeEEeC-------HHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCC
Q 012363 319 G-GLPIGAALVT-------EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNP 390 (465)
Q Consensus 319 ~-G~~iG~v~~~-------~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 390 (465)
. |+|+||++++ +++++.+... ...+++.++++++++.++|+... .+..++..+.....++.+.+.+.++|
T Consensus 267 ~~G~riG~~~~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~~~a~~~~L~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~ 344 (427)
T 3dyd_A 267 VPGWRLGWILIHDRRDIFGNEIRDGLVKL-SQRILGPCTIVQGALKSILCRTP-GEFYHNTLSFLKSNADLCYGALAAIP 344 (427)
T ss_dssp CGGGCCEEEEEECSTTSSHHHHHHHHHHH-HHHHCCSCHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CcCcceEEEEecCcchhhHHHHHHHHHHH-HhccCCCCHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5 8999999987 4677666432 12367889999999999998532 23334444444444455555555555
Q ss_pred Cceee-eccceEEEEEec-------CChHHHHHHHH-HCCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012363 391 HVKDV-RGLGLIIGIEFD-------VSATPVVDACR-DSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 391 ~~~~~-~~~g~~~~i~~~-------~~~~~~~~~l~-~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
.+..+ +..|.++++.++ .+..++++.|+ ++||++.++. .++++|+++. ++++++++++++|.++++
T Consensus 345 g~~~~~p~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l~ 422 (427)
T 3dyd_A 345 GLRPVRPSGAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVIT--VPEVMMLEACSRIQEFCE 422 (427)
T ss_dssp TEEEECCSBTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEESC--SCHHHHHHHHHHHHHHHH
T ss_pred CceecCCCeeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEEC--CCHHHHHHHHHHHHHHHH
Confidence 55444 445677777774 34678888886 7899999863 2478999864 789999999999999998
Q ss_pred Hhhh
Q 012363 459 VLDS 462 (465)
Q Consensus 459 ~~~~ 462 (465)
++++
T Consensus 423 ~~~~ 426 (427)
T 3dyd_A 423 QHYH 426 (427)
T ss_dssp HHCC
T ss_pred Hhhc
Confidence 8764
No 64
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=100.00 E-value=3.6e-33 Score=276.09 Aligned_cols=325 Identities=14% Similarity=0.125 Sum_probs=233.2
Q ss_pred eCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHH
Q 012363 94 DAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAA 171 (465)
Q Consensus 94 d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~a 171 (465)
+.||+++|||.++.. ++| .+|++++++.++++... .|+.....+++++++++++ .++|++++||++|+..+
T Consensus 20 ~~~~~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~~----~y~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~ 92 (364)
T 1lc5_A 20 GISPDQLLDFSANIN--PLG-MPVSVKRALIDNLDCIE----RYPDADYFHLHQALARHHQVPASWILAGNGETESIFTV 92 (364)
T ss_dssp TSCGGGSEECSSCCC--TTC-CCHHHHHHHHHTGGGGG----SCCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHH
T ss_pred CCCccceEEeccccC--CCC-CCHHHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHH
Confidence 457889999998864 577 78999999999876532 2233335688888888887 57999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC-----C-HHHHHhhcCCC
Q 012363 172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----N-IEATRKLIQPG 245 (465)
Q Consensus 172 l~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d-~~~le~~l~~~ 245 (465)
++.+ . +++|++.+|+||++...+...+... ..+|.+ + ++++.+.+.++
T Consensus 93 ~~~~----~---------gd~vl~~~p~y~~~~~~~~~~g~~~-------------~~v~~~~~~~~~~l~~~~~~~~~~ 146 (364)
T 1lc5_A 93 ASGL----K---------PRRAMIVTPGFAEYGRALAQSGCEI-------------RRWSLREADGWQLTDAILEALTPD 146 (364)
T ss_dssp HHHH----C---------CSEEEEEESCCTHHHHHHHHTTCEE-------------EEEECCGGGTTCCCTTHHHHCCTT
T ss_pred HHHc----C---------CCeEEEeCCCcHHHHHHHHHcCCeE-------------EEEeCCcccccchhHHHHHhccCC
Confidence 9876 1 4789999999999876554433211 112211 1 34455555433
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-cc-ccccCCcccEEEecccCC-Cccc
Q 012363 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WA-HEHYGIFPDIMTLAKPLA-GGLP 322 (465)
Q Consensus 246 ~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~-~~~~~~~pdi~t~sK~lg-~G~~ 322 (465)
..++++++|.|++ |. .++.+++++|.++|++||+++|+||+|++|++.+.. .. .+.++....+.++||.++ +|+|
T Consensus 147 ~~~v~i~~p~npt-G~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 224 (364)
T 1lc5_A 147 LDCLFLCTPNNPT-GL-LPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLR 224 (364)
T ss_dssp CCEEEEESSCTTT-CC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTC
T ss_pred CCEEEEeCCCCCC-CC-CCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCccc
Confidence 3345556775554 44 458899999999999999999999999987654432 11 122344455668999998 6899
Q ss_pred eeeEE-eCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceE
Q 012363 323 IGAAL-VTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLI 401 (465)
Q Consensus 323 iG~v~-~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~ 401 (465)
+||++ +++++++.+... ..+++.|+++++++.++|+. .++.++.++.....++.+.+.+.++|.+...++.|.+
T Consensus 225 ~G~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~ 299 (364)
T 1lc5_A 225 LGYLVNSDDAAMARMRRQ--QMPWSVNALAALAGEVALQD---SAWQQATWHWLREEGARFYQALCQLPLLTVYPGRANY 299 (364)
T ss_dssp CEEEECCCHHHHHHHHHH--SCTTCSCHHHHHHHHHGGGC---HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCSSSE
T ss_pred eEEEEECCHHHHHHHHHh--CCCCCCCHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCCCCeE
Confidence 99999 999998887642 24678899999998888863 3455666666666666666666666555555677888
Q ss_pred EEEEecCChHHHHHHHHHCCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012363 402 IGIEFDVSATPVVDACRDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 402 ~~i~~~~~~~~~~~~l~~~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
+++.++....++.+.|.++||.+.++.. ++++|+++. ++++++++++.|+++++++.
T Consensus 300 ~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~~~~~~ 361 (364)
T 1lc5_A 300 LLLRCEREDIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR---SAAQNERLLAALRNVLTGIA 361 (364)
T ss_dssp EEEEESCTTCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHC----
T ss_pred EEEECCCcHHHHHHHHHHCCcEEeeCcccCCCCCCEEEEEeC---CHHHHHHHHHHHHHHhhccc
Confidence 8888754445789999999999988631 368999853 68889999999998877653
No 65
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=100.00 E-value=1.1e-32 Score=272.35 Aligned_cols=316 Identities=17% Similarity=0.155 Sum_probs=232.8
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHH
Q 012363 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFA 175 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a 175 (465)
+++|||.++.. +++ .+|+|++++.++++.. ..++.....+++++++++++ .++|++++||++|+..+++.+
T Consensus 32 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~ 104 (363)
T 3ffh_A 32 TKITKLSSNEN--PLG-TSKKVAAIQANSSVET----EIYPDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVL 104 (363)
T ss_dssp SCCEECSSCSC--TTC-CCHHHHHHHHTCBSCC----CBC----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH
T ss_pred CceEEccCCCC--CCC-CCHHHHHHHHHHHHHh----hcCCCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHH
Confidence 57899998855 565 7899999998876542 23444456788899998887 689999999999999999976
Q ss_pred HHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC-----CHHHHHhhcCCCCeEEE
Q 012363 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPGKTAAV 250 (465)
Q Consensus 176 ~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~a~v 250 (465)
. .++++|++.+|+|+++...+...+.. +..+|.+ |++++++++++ ++++|
T Consensus 105 ~-----------~~gd~vl~~~~~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~d~~~l~~~i~~-~~~~v 159 (363)
T 3ffh_A 105 L-----------DTTTNTVMATPTFVQYRQNALIEGAE-------------VREIPLLQDGEHDLEGMLNAIDE-KTTIV 159 (363)
T ss_dssp C-----------STTCEEEEEESSCHHHHHHHHHHTCE-------------EEEEECCTTSCCCHHHHHHHCCT-TEEEE
T ss_pred c-----------cCCCEEEEcCCChHHHHHHHHHcCCE-------------EEEecCCCCCCcCHHHHHHhccc-CCCEE
Confidence 4 15889999999999877555443322 2223332 89999999975 46666
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCccc----EEEecccCC-Cccceee
Q 012363 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPD----IMTLAKPLA-GGLPIGA 325 (465)
Q Consensus 251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pd----i~t~sK~lg-~G~~iG~ 325 (465)
+++..++.+|.+ .+.+.+.+|++.|++ |+++|+||+|++|++ +...........+| +.++||.+| +|+|+|+
T Consensus 160 ~~~~p~nptG~~-~~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~ 236 (363)
T 3ffh_A 160 WICNPNNPTGNY-IELADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGY 236 (363)
T ss_dssp EEESSCTTTCCC-CCHHHHHHHHTTSCT-TSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEE
T ss_pred EEeCCCCCcCCC-cCHHHHHHHHHhCCC-CcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEeechhhhcCchhceee
Confidence 665555555654 466777777777777 999999999998866 54322211111122 568999998 6999999
Q ss_pred EEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEE
Q 012363 326 ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIE 405 (465)
Q Consensus 326 v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~ 405 (465)
+++++++++.+.... .+++.|+++++++.++|+. .++.++.++....+++.+.+.+.+++.+...++.|.++++.
T Consensus 237 ~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~ 311 (363)
T 3ffh_A 237 GIADKEIIRQLNIVR--PPFNTTSIGQKLAIEAIKD---QAFIGECRTSNANGIKQYEAFAKRFEKVKLYPANGNFVLID 311 (363)
T ss_dssp EEECHHHHHHHHHTC--CSCCCBHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCSSEEEEE
T ss_pred eecCHHHHHHHHHhC--CCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHhhCCCceECCCCCeEEEEE
Confidence 999999998887543 3788999999999999973 34555555555666666666665544455567778899988
Q ss_pred ecCChHHHHHHHHHCCceEeecCC---CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012363 406 FDVSATPVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 406 ~~~~~~~~~~~l~~~Gv~v~~~~~---~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
++.+..++.+.|.++||.+.++.. ++++|++++ +++|+++++++|+++
T Consensus 312 ~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 312 LGIEAGTIFSYLEKNGYITRSGAALGFPTAVRITIG---KEEDNSAVIALLEKL 362 (363)
T ss_dssp CSSCHHHHHHHHHHTTEECEETTTTTCTTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCeEEEeCccCCCCCeEEEECC---CHHHHHHHHHHHHHh
Confidence 865788899999999999998642 478999865 899999999999875
No 66
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.2e-32 Score=277.10 Aligned_cols=338 Identities=13% Similarity=0.094 Sum_probs=230.9
Q ss_pred CCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcc-ccc--CCCCCHHHHHHHHHHHhhcC----C-CeEEecCCHHH
Q 012363 95 AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-HVS--NMYYSIPQIELAKRLVACSF----A-DRVFFSNTGTE 166 (465)
Q Consensus 95 ~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~-~~~--~~~~~~~~~~la~~l~~~~~----~-~~v~~~~sG~e 166 (465)
.+|+++|||.++.. .+| .+|.+++++.+++++.. +.+ ..+..+.++++++++.+.++ . ++|++|+||++
T Consensus 34 ~~g~~~idl~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~ 110 (412)
T 2x5d_A 34 RRGEDIIDLSMGNP--DGP-TPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKE 110 (412)
T ss_dssp HTTCCCEECSSCCC--CSC-CCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHH
T ss_pred hcCCCEEecCCCCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHH
Confidence 47889999999874 566 78999999999876531 111 11122335555555544435 3 69999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCC
Q 012363 167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGK 246 (465)
Q Consensus 167 A~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 246 (465)
|+..+++.+. + ++++|++.+|+||++...+...+..... .+......+. .|+++|+++++++.
T Consensus 111 a~~~~~~~~~---~--------~gd~Vl~~~p~~~~~~~~~~~~g~~~~~----~~~~~~~~~~--~d~~~l~~~i~~~~ 173 (412)
T 2x5d_A 111 GLAHLMLATL---D--------HGDTILVPNPSYPIHIYGAVIAGAQVRS----VPLVPGIDFF--NELERAIRESIPKP 173 (412)
T ss_dssp HHHHHHHHHC---C--------TTCEEEEEESCCHHHHHHHHHHTCEEEE----EECSTTSCHH--HHHHHHHHTEESCC
T ss_pred HHHHHHHHhC---C--------CCCEEEEcCCCchhHHHHHHHcCCEEEE----eecCCccCCC--CCHHHHHHhcccCc
Confidence 9999999764 1 5789999999999987655443321110 0111110000 16789999987433
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc-cccccc----cCCcccEEEecccCC-Cc
Q 012363 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAHEH----YGIFPDIMTLAKPLA-GG 320 (465)
Q Consensus 247 ~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~-~~~~~~----~~~~pdi~t~sK~lg-~G 320 (465)
.++++++|.|++ |. .++.+++++|.++|++||++||+||+|+++.+.|. ...... .+..+.+.++||.++ +|
T Consensus 174 ~~v~l~~p~npt-G~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 251 (412)
T 2x5d_A 174 RMMILGFPSNPT-AQ-CVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAG 251 (412)
T ss_dssp SEEEEESSCTTT-CC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTT
T ss_pred eEEEECCCCCCC-CC-cCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcc
Confidence 344445665444 44 45889999999999999999999999999866553 111111 244455668999998 69
Q ss_pred cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHcCCCceeeecc
Q 012363 321 LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN--PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGL 398 (465)
Q Consensus 321 ~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 398 (465)
+|+||+++++++++.+.......+++.|+++++++.++|+...+ ++..++++++.+++.+.|++. ... ..++.
T Consensus 252 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~---~~~~~ 326 (412)
T 2x5d_A 252 WRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREA--GWM---VENPK 326 (412)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHH--TCC---CCCCS
T ss_pred cceEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC--CCE---ecCCC
Confidence 99999999999998886544455788899999999999985321 234455555666666666554 222 22333
Q ss_pred -ceEEEEEecC-----ChHHHHHHHHH-CCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012363 399 -GLIIGIEFDV-----SATPVVDACRD-SGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 399 -g~~~~i~~~~-----~~~~~~~~l~~-~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
|.++++.++. +..++.+.|++ +||++.++.. .+++|++++. +++++++++++|.++++++.
T Consensus 327 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~~~l~~~l~~l~~~l~~~~ 399 (412)
T 2x5d_A 327 ASMYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE--NRDRLRQAVRGIKAMFRADG 399 (412)
T ss_dssp BSSEEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHHHHHTT
T ss_pred eeeEEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHhcC
Confidence 6678888742 56789999875 6999987631 3689999875 89999999999999998754
No 67
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=100.00 E-value=1.3e-32 Score=274.68 Aligned_cols=329 Identities=12% Similarity=0.060 Sum_probs=229.4
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC--CCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHHH
Q 012363 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN--MYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANE 169 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~ 169 (465)
+|+++|||.++.. .++ .+|+|++++.+++.+....+. .+..+.++++++++.+.++ .++|++|+||++|+.
T Consensus 29 ~g~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~ 105 (391)
T 3h14_A 29 AGRRIIHMEVGQP--GTG-APRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFL 105 (391)
T ss_dssp TTCCCEECCCSSC--SSC-SCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHH
T ss_pred cCCCeEEccCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHH
Confidence 6889999999875 455 378999999998865322111 1123335666666655433 689999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC-------CCHHHHHhhc
Q 012363 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-------GNIEATRKLI 242 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l 242 (465)
.+++.+. .++++|++.+|+|+++...+...+.. +..+|. .|+++|+++
T Consensus 106 ~~~~~l~-----------~~gd~vl~~~p~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~d~~~l~~~- 160 (391)
T 3h14_A 106 LAFTALF-----------DSGDRVGIGAPGYPSYRQILRALGLV-------------PVDLPTAPENRLQPVPADFAGL- 160 (391)
T ss_dssp HHHHHHC-----------CTTCEEEEEESCCHHHHHHHHHTTCE-------------EEEEECCGGGTTSCCHHHHTTS-
T ss_pred HHHHHhc-----------CCCCEEEEcCCCCccHHHHHHHcCCE-------------EEEeecCcccCCCCCHHHHHhc-
Confidence 9998764 16889999999999887554433321 122222 178888877
Q ss_pred CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccc-ccccCCcccEEEecccCC-Cc
Q 012363 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA-HEHYGIFPDIMTLAKPLA-GG 320 (465)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~-~~~~~~~pdi~t~sK~lg-~G 320 (465)
++++|+++..++++|. ..+.+.+++|.++|++||+++|+||+|++|.+.|.... ....+....+.++||.+| +|
T Consensus 161 ---~~~~v~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G 236 (391)
T 3h14_A 161 ---DLAGLMVASPANPTGT-MLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTG 236 (391)
T ss_dssp ---CCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTT
T ss_pred ---CCeEEEECCCCCCCCc-cCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCcc
Confidence 3444444444444454 45788899999999999999999999999877664322 222233344558999998 79
Q ss_pred cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeecc-c
Q 012363 321 LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGL-G 399 (465)
Q Consensus 321 ~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-g 399 (465)
+|+||+++++++++.+.......+++.++++++++.++|+ ..+..++.++....+++.+.+.+.+++.....++. +
T Consensus 237 ~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 313 (391)
T 3h14_A 237 WRVGWMVVPEDQVRVVERIAQNMFICAPHASQVAALAALD---CDAELQANLDVYKANRKLMLERLPKAGFTRIAPPDGA 313 (391)
T ss_dssp SCCEEEECCGGGHHHHHHHHHHTTCCCCHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCCBT
T ss_pred ceeEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCee
Confidence 9999999999998888655556678889999999988887 33444555555555555555544444543333333 4
Q ss_pred eEEEEEec---CChHHHHHHHHHC-CceEeecC------CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012363 400 LIIGIEFD---VSATPVVDACRDS-GLLVLTAG------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 400 ~~~~i~~~---~~~~~~~~~l~~~-Gv~v~~~~------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
.++++.++ .+..++.+.|+++ ||.+.++. ..+++|++++. +++++++++++|++++++..
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~~~~~~ 383 (391)
T 3h14_A 314 FYVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR--ATADIEEGLDRLEAFMQARG 383 (391)
T ss_dssp TEEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS--CHHHHHHHHHHHHHHHHHC-
T ss_pred EEEEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHHhc
Confidence 66777773 3677899998875 99998752 13689998775 78999999999999988654
No 68
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-33 Score=282.47 Aligned_cols=334 Identities=18% Similarity=0.143 Sum_probs=233.7
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhc--cccc-CCCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHH
Q 012363 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL--THVS-NMYYSIPQIELAKRLVACSF----ADRVFFSNTGTEAN 168 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~--~~~~-~~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~ 168 (465)
.|+++|||..+.+ .++ .+|.|.+++.+++++. ..+. ..+..+.++++++++.+.++ .++|++|+||++|+
T Consensus 55 ~~~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al 131 (447)
T 3b46_A 55 QGRELINLGQGFF--SYS-PPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGI 131 (447)
T ss_dssp TTSCCEECCCCSC--SSC-CCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHH
T ss_pred cCCCeEEccCCCC--CCC-CCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence 4567899999875 455 7899999999998752 1111 11223446677777766555 46899999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCc-------eEeeC-CCHHHHHh
Q 012363 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGV-------NFVEY-GNIEATRK 240 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~d~~~le~ 240 (465)
..+++.+. .++++|++.+|+||++...+...+...... +..+.. ....+ .|+++|++
T Consensus 132 ~~~~~~l~-----------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v----~~~~~~~~~~~~~~~~~~~~d~~~l~~ 196 (447)
T 3b46_A 132 LSCLMGLL-----------NAGDEVIVFEPFFDQYIPNIELCGGKVVYV----PINPPKELDQRNTRGEEWTIDFEQFEK 196 (447)
T ss_dssp HHHHHHHC-----------CTTCEEEEEESCCTTHHHHHHHTTCEEEEE----EEECCGGGGTSCBCSTTSEECHHHHHT
T ss_pred HHHHHHHc-----------CCCCEEEEeCCCchhHHHHHHHcCCEEEEE----eCCCccccccccccccCcccCHHHHHH
Confidence 99999764 268999999999999876554433221111 110100 00001 28999999
Q ss_pred hcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc---ccc--cccCCcccEEEecc
Q 012363 241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL---WAH--EHYGIFPDIMTLAK 315 (465)
Q Consensus 241 ~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~---~~~--~~~~~~pdi~t~sK 315 (465)
++++ ++++|++++.++++|.+ ++++++++|+++|++||++||+||+|+++.+.|.. ..+ +.++..+++.++||
T Consensus 197 ~l~~-~~~~v~l~~p~nptG~~-~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK 274 (447)
T 3b46_A 197 AITS-KTKAVIINTPHNPIGKV-FTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGK 274 (447)
T ss_dssp TCCT-TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHH
T ss_pred hhcc-CCeEEEEeCCCCCCCcc-cCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCch
Confidence 9974 56666665555555554 57899999999999999999999999998766531 112 13466677889999
Q ss_pred cCC-CccceeeEEe-CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHH----HHHHHHHHHHHHHHHHHHHcC
Q 012363 316 PLA-GGLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL----ASVSKKGHYFKETLKQKLARN 389 (465)
Q Consensus 316 ~lg-~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~----~~~~~~~~~l~~~l~~~~~~~ 389 (465)
.++ .|+|+||+++ ++++++.+....+..+++.++++++++.++|+....+++. ++++++.+++.+.|+++
T Consensus 275 ~~~~~G~riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---- 350 (447)
T 3b46_A 275 SFAATGWRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDEL---- 350 (447)
T ss_dssp HTTCTTSCCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred hcCCcchhhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHC----
Confidence 999 6999999999 9999988865444567888999999999999865333434 44445555555555443
Q ss_pred CCceeeeccceEEEEEecC-----------------ChHHHHHHHH-HCCceEeecC----------CCCEEEEecCCCC
Q 012363 390 PHVKDVRGLGLIIGIEFDV-----------------SATPVVDACR-DSGLLVLTAG----------KGNVVRLVPPLII 441 (465)
Q Consensus 390 ~~~~~~~~~g~~~~i~~~~-----------------~~~~~~~~l~-~~Gv~v~~~~----------~~~~lRi~~~~~~ 441 (465)
+.....+..|.++++++.. +..++++.|+ ++||.+.|+. .++++||+++ .
T Consensus 351 g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~--~ 428 (447)
T 3b46_A 351 GLPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVC--K 428 (447)
T ss_dssp TCCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECC--S
T ss_pred CCeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEe--C
Confidence 3222234457788888742 2457888887 5899998762 0378999876 4
Q ss_pred cHHHHHHHHHHHHH
Q 012363 442 SEQELDQAVEILCK 455 (465)
Q Consensus 442 t~e~i~~~l~~l~~ 455 (465)
++++|++++++|++
T Consensus 429 ~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 429 DDAYLENAVERLKL 442 (447)
T ss_dssp CHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHH
Confidence 89999999999976
No 69
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=100.00 E-value=5.9e-33 Score=275.58 Aligned_cols=324 Identities=11% Similarity=-0.002 Sum_probs=233.1
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHHHH
Q 012363 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANEA 170 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~~ 170 (465)
+| ++|||.++.. +++ .||.|++++.+++.....+.. .+..+.++++++++.+.++ .++|++|+||++|+..
T Consensus 22 ~g-~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~ 97 (376)
T 3ezs_A 22 KK-RGLDLGIGEP--QFE-TPKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFN 97 (376)
T ss_dssp SS-CCCBCSSCCC--CSC-CCHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHH
T ss_pred cC-CEEEeCCCCC--CCC-CCHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHH
Confidence 67 8999999875 566 689999999988744322221 1223446777777766655 5799999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCC--CceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHH----HHHhhcCC
Q 012363 171 AIKFARKFQRHSNPDSKEP--ATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIE----ATRKLIQP 244 (465)
Q Consensus 171 al~~a~~~t~~~~~~~~~~--~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~----~le~~l~~ 244 (465)
+++.+.. + +++|++.+|+||++...+...+... ..+|.++.+ ++++.+.+
T Consensus 98 ~~~~~~~-----------~~~gd~vl~~~p~~~~~~~~~~~~g~~~-------------~~~~~~~~~~~~~~l~~~~~~ 153 (376)
T 3ezs_A 98 FPSFVLF-----------DYQNPTIAYPNPFYQIYEGAAKFIKAKS-------------LLMPLTKENDFTPSLNEKELQ 153 (376)
T ss_dssp HHHHHTT-----------TCSSCEEEEEESCCTHHHHHHHHTTCEE-------------EEEECCGGGTSCCCCCHHHHH
T ss_pred HHHHHcC-----------CCCCCEEEEecCCcHhHHHHHHHcCCEE-------------EEcccCCCCCcchhHHhhhcc
Confidence 9997752 5 7899999999998876554433221 122221110 34444443
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccc-c--------ccCCcccEEEecc
Q 012363 245 GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH-E--------HYGIFPDIMTLAK 315 (465)
Q Consensus 245 ~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~-~--------~~~~~pdi~t~sK 315 (465)
+..++++++|.| ++|. .++.+.+++|+++|++||++||+||+|++|.+.+..... . ..+..+.+.++||
T Consensus 154 ~~~~v~~~~p~n-ptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK 231 (376)
T 3ezs_A 154 EVDLVILNSPNN-PTGR-TLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSK 231 (376)
T ss_dssp HCSEEEECSSCT-TTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTT
T ss_pred CCCEEEEcCCCC-CcCC-CCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchh
Confidence 233444445544 4444 458888999999999999999999999998776643222 1 3455667789999
Q ss_pred cCC-CccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCcee
Q 012363 316 PLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKD 394 (465)
Q Consensus 316 ~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 394 (465)
.+| +|+|+||+++++++++.+.......+++.|+++++++.++|+. .+..++.++.....++.+.+.+. +. .
T Consensus 232 ~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~--~~-~- 304 (376)
T 3ezs_A 232 RSSAPGLRSGFIAGDSRLLEKYKAFRAYLGYTSANAIQKASEAAWLD---DRHAEFFRNIYANNLKLARKIFK--NT-L- 304 (376)
T ss_dssp TTTCGGGCCEEEEECHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHC---SHHHHHHHHHHHHHHHHHHHHST--TC-C-
T ss_pred ccCCccceeEEEeeCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHhc--CC-C-
Confidence 997 6999999999999998887655566788999999999999983 34455555555555666655544 22 2
Q ss_pred eeccceEEEEEecCChHHHHHHHHH-CCceEeecC-------CCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012363 395 VRGLGLIIGIEFDVSATPVVDACRD-SGLLVLTAG-------KGNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 395 ~~~~g~~~~i~~~~~~~~~~~~l~~-~Gv~v~~~~-------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
.+..|.++++.++ +..++.+.|++ +||++.++. ..+++||+++ .+++++++++++|++++++
T Consensus 305 ~~~~~~~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l~~ 374 (376)
T 3ezs_A 305 IYPYSFYVYLPVQ-NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALV--YDTPLLEKPLEIIETYREN 374 (376)
T ss_dssp CCSBSSEEEEECS-CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECC--SCHHHHHHHHHHHHHHHCC
T ss_pred CCCcceEEEEECC-CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEc--CCHHHHHHHHHHHHHHHHh
Confidence 4567888888885 67889999998 899998752 2478999876 3999999999999998864
No 70
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=100.00 E-value=2.1e-36 Score=302.48 Aligned_cols=352 Identities=12% Similarity=0.047 Sum_probs=243.6
Q ss_pred eEEEeeeccEEEeCCCC--EEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC----C
Q 012363 82 VVLASGKGCKLYDAEGR--EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF----A 155 (465)
Q Consensus 82 ~~~~~~~G~~~~d~dG~--~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~----~ 155 (465)
++..+++|+++||.+|+ +++||..+.+ .++ .+|++++++.+++.+..+.+.....+.++++++++.+.++ .
T Consensus 13 ~~~~~~~g~~~~d~~g~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~ 89 (392)
T 3b1d_A 13 APNRLSHHTYKWKETETDPQLLPAWIADM--DFE-VMPEVKQAIHDYAEQLVYGYTYASDELLQAVLDWEKSEHQYSFDK 89 (392)
Confidence 44567999999999999 9999988865 455 6789999999988653222111123335566666655544 6
Q ss_pred CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCC-ceEeeCCC
Q 012363 156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPG-VNFVEYGN 234 (465)
Q Consensus 156 ~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d 234 (465)
++|++++||++|+..+++++.. ++++|++.+|+||++...+...+..... .+.... ..+. .|
T Consensus 90 ~~v~~~~g~~~a~~~~~~~~~~-----------~gd~vl~~~p~~~~~~~~~~~~g~~~~~----~~~~~~~g~~~--~d 152 (392)
T 3b1d_A 90 EDIVFVEGVVPAISIAIQAFTK-----------EGEAVLINSPVYPPFARSVRLNNRKLVS----NSLKEENGLFQ--ID 152 (392)
Confidence 7899999999999999997752 5789999999999988655443322111 111100 0000 27
Q ss_pred HHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc----cccccc--cCCcc
Q 012363 235 IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY----LWAHEH--YGIFP 308 (465)
Q Consensus 235 ~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~----~~~~~~--~~~~p 308 (465)
+++|+++++..++++|++...++++|. .++.+++++|+++|++||++||+||+|++|.+.|. ...+.. .+..+
T Consensus 153 ~~~l~~~l~~~~~~~v~~~~~~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i 231 (392)
T 3b1d_A 153 FEQLENDIVENDVKLYLLCNPHNPGGR-VWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFAL 231 (392)
Confidence 888998887334556665444444554 45778999999999999999999999999876653 222222 44557
Q ss_pred cEEEecccCC-CccceeeEEeCH-HHHhhccCCCCcCCC-CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Q 012363 309 DIMTLAKPLA-GGLPIGAALVTE-KVASAINYGDHGSTF-AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQK 385 (465)
Q Consensus 309 di~t~sK~lg-~G~~iG~v~~~~-~i~~~~~~~~~~~t~-~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~ 385 (465)
++.++||+++ +|+|+||+++++ ++++.+.......++ +.|+++++++.++|+.. +++.+++++.....++.+.+.
T Consensus 232 ~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~ 309 (392)
T 3b1d_A 232 VLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYG--KPWLVALKAVLEENIQFAVEY 309 (392)
Confidence 7889999998 799999999875 588888754444443 46899999999988742 344455555555555555555
Q ss_pred HHc-CCCceeeeccceEE-EEEec---CChHHHHHHHH-HCCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHH
Q 012363 386 LAR-NPHVKDVRGLGLII-GIEFD---VSATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILC 454 (465)
Q Consensus 386 ~~~-~~~~~~~~~~g~~~-~i~~~---~~~~~~~~~l~-~~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~ 454 (465)
+.+ +|.+..+++.|.++ ++++. .+..++.+.|+ ++||++.++.. ++++|+++. .+++++++++++|+
T Consensus 310 l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~e~i~~~l~~l~ 387 (392)
T 3b1d_A 310 FAQEAPRLKVMKPQGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIA--APKSLVEEICKRIV 387 (392)
Confidence 444 44444455666665 46763 24567888897 78999987531 257888654 47899999999999
Q ss_pred HHHH
Q 012363 455 KTLP 458 (465)
Q Consensus 455 ~~l~ 458 (465)
++++
T Consensus 388 ~~l~ 391 (392)
T 3b1d_A 388 CCLP 391 (392)
Confidence 8775
No 71
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=4.4e-33 Score=276.64 Aligned_cols=330 Identities=13% Similarity=0.062 Sum_probs=233.6
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCC-HHHHHHHHHHHhhc----CC----C-eEEecCCHH
Q 012363 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS-IPQIELAKRLVACS----FA----D-RVFFSNTGT 165 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~-~~~~~la~~l~~~~----~~----~-~v~~~~sG~ 165 (465)
+|+++|||.++.+ .+| .+|.+++++.+++++.. ...|+. ....++++.+++++ +. + +|++++||+
T Consensus 23 ~g~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~~--~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~ 97 (376)
T 2dou_A 23 RGVGLIDLSIGST--DLP-PPEAPLKALAEALNDPT--TYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQ 97 (376)
T ss_dssp TTCCCEECSSCCC--CCC-CCHHHHHHHHHHTTCGG--GSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHH
T ss_pred cCCCEEeccCCCC--CCC-CCHHHHHHHHHHHhCCC--cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcH
Confidence 5788999999875 577 58999999999886521 123444 23556666666654 62 4 899999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCC
Q 012363 166 EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG 245 (465)
Q Consensus 166 eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~ 245 (465)
+|+..+++.+. .++++|++.+|+||++...+...+...... +...+.. .|+++|++++++
T Consensus 98 ~a~~~~~~~l~-----------~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~----~~~~~~~----~d~~~l~~~l~~- 157 (376)
T 2dou_A 98 EGLAHLLLALT-----------EPEDLLLLPEVAYPSYFGAARVASLRTFLI----PLREDGL----ADLKAVPEGVWR- 157 (376)
T ss_dssp HHHHHHHHHHC-----------CTTCEEEEESSCCHHHHHHHHHTTCEEEEE----CBCTTSS----BCGGGSCHHHHH-
T ss_pred HHHHHHHHHhc-----------CCCCEEEECCCCcHhHHHHHHHcCCEEEEe----eCCCCCC----CCHHHHHHhhcc-
Confidence 99999998764 157899999999999876654433221111 1111111 277888887753
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc-cccc---cCCcccEEEecccCC-Cc
Q 012363 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEH---YGIFPDIMTLAKPLA-GG 320 (465)
Q Consensus 246 ~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~-~~~~---~~~~pdi~t~sK~lg-~G 320 (465)
++++|+++..++++|. .++.+++++|.++|++||++||+||+|+++.+.|... .... .+..+++.++||.++ +|
T Consensus 158 ~~~~v~l~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 236 (376)
T 2dou_A 158 EAKVLLLNYPNNPTGA-VADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAG 236 (376)
T ss_dssp HEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGG
T ss_pred CceEEEECCCCCCcCc-cCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChh
Confidence 4666666533444454 4588999999999999999999999999886655321 1222 234455678999998 68
Q ss_pred cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeec-cc
Q 012363 321 LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRG-LG 399 (465)
Q Consensus 321 ~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~g 399 (465)
+|+||+++++++++.+.......+++.|+++++++.++|+.. +++.++.++.....++.+.+.+.++ +...++ .|
T Consensus 237 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~ 312 (376)
T 2dou_A 237 FRLGFALGSEEALARLERVKGVIDFNQYAGVLRMGVEALKTP--KEVVRGYARVYRERALGMAEALKGV--LSLLPPRAT 312 (376)
T ss_dssp GCCEEEEECHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHHHHTTT--SEECCCCBS
T ss_pred heeEEEecCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHHh--cCccCCCee
Confidence 999999999999988865444556778999999999888742 3455555555555566666655554 333333 46
Q ss_pred eEEEEEec--CChHHHHHHHHHCCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012363 400 LIIGIEFD--VSATPVVDACRDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 400 ~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
.+++++++ .+..++.+.|+++||.+.++.. .+++|++++. +++++++++++|++++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~~--~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 313 MYLWGRLPEGVDDLEFGLRLVERGVALAPGRGFGPGGKGFVRIALVR--PLEELLEAAKRIREAL 375 (376)
T ss_dssp SEEEEECCTTCCHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence 67888874 3467899999999999987531 3789998764 8999999999998764
No 72
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=100.00 E-value=2.2e-32 Score=271.06 Aligned_cols=323 Identities=11% Similarity=0.059 Sum_probs=227.5
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC--CCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHHH
Q 012363 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN--MYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANE 169 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~ 169 (465)
+|++++||.++.+ .+|+ +|.+++++.++++.....+. ....+.++++++++.+.++ .++|++++||++|+.
T Consensus 27 ~g~~~i~l~~~~~--~~~~-~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~ 103 (370)
T 2z61_A 27 EGKKVIHLEIGEP--DFNT-PKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLF 103 (370)
T ss_dssp TTCCCEECCCCSC--SSCC-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHH
T ss_pred cCCCEEEccCCCC--CCCC-CHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHH
Confidence 4778899998865 5776 79999999998875322111 1123346666666655433 578999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEE
Q 012363 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAA 249 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~ 249 (465)
.+++.+. .++++|++.+|+||++...+...+. .+..+| .|+++|++++++ ++++
T Consensus 104 ~~~~~~~-----------~~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~v~-~d~~~l~~~l~~-~~~~ 157 (370)
T 2z61_A 104 FALSSII-----------DDGDEVLIQNPCYPCYKNFIRFLGA-------------KPVFCD-FTVESLEEALSD-KTKA 157 (370)
T ss_dssp HHHHHHC-----------CTTCEEEEESSCCTHHHHHHHHTTC-------------EEEEEC-SSHHHHHHHCCS-SEEE
T ss_pred HHHHHhc-----------CCCCEEEEeCCCchhHHHHHHHcCC-------------EEEEeC-CCHHHHHHhccc-CceE
Confidence 9999764 1578999999999998755433221 223344 589999999975 5666
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccccccc----CCcccEEEecccCC-Ccccee
Q 012363 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHY----GIFPDIMTLAKPLA-GGLPIG 324 (465)
Q Consensus 250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~----~~~pdi~t~sK~lg-~G~~iG 324 (465)
|+++..++.+|.+.+ ++ |.++|++||++||+||+|+++.+.|.......+ +....+.++||.++ +|+|+|
T Consensus 158 v~~~~p~nptG~~~~----~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 232 (370)
T 2z61_A 158 IIINSPSNPLGEVID----RE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIG 232 (370)
T ss_dssp EEEESSCTTTCCCCC----HH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCE
T ss_pred EEEcCCCCCcCcccC----HH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEE
Confidence 666555555666554 33 999999999999999999988665543222222 33334558999998 689999
Q ss_pred eEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHH-hcC--chHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceE
Q 012363 325 AALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK-ISN--PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLI 401 (465)
Q Consensus 325 ~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~-~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~ 401 (465)
++++++++++.+.......+++.|+++++++.++|+. ..+ ++..++++++.+++.+.|++. +.....+..|.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~ 308 (370)
T 2z61_A 233 YVISNDEIIEAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF----GWEVNNPIGAYY 308 (370)
T ss_dssp EEECCHHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCBCCCCCBTTE
T ss_pred EEEECHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc----CCeecCCCcceE
Confidence 9999999988886544556678899999998888864 211 234455555566666555543 221112233666
Q ss_pred EEEEecCChHHHHHHHH-HCCceEeecC-----CCCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012363 402 IGIEFDVSATPVVDACR-DSGLLVLTAG-----KGNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 402 ~~i~~~~~~~~~~~~l~-~~Gv~v~~~~-----~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
+++.++.+..++.+.|+ ++||.+.++. ..+++|++++ ++++++++++++|+++++
T Consensus 309 ~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 309 VFPNIGEDGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA--NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp ECCBCSSCHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred EEEecCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 67776436778999998 7899998752 1368999887 699999999999998764
No 73
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=100.00 E-value=6.8e-32 Score=269.17 Aligned_cols=338 Identities=15% Similarity=0.077 Sum_probs=235.8
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC--CCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHHH
Q 012363 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN--MYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANE 169 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~ 169 (465)
+|++++||.++.+ .++ .+|.+.+++.++++.....+. .+..+.+.++++++.+.++ .++|++++||++|+.
T Consensus 28 ~g~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~ 104 (388)
T 1j32_A 28 EGIDVCSFSAGEP--DFN-TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIF 104 (388)
T ss_dssp TTCCCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEECCCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHH
Confidence 6788999999865 466 679999999998865321111 1123346666666665544 578999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC-CCHHHHHhhcCCCCeE
Q 012363 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-GNIEATRKLIQPGKTA 248 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~a 248 (465)
.+++.+. .++++|++.+|+||++...+...+..... .+..... .+ .|+++|++++++ +++
T Consensus 105 ~~~~~~~-----------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~----v~~~~~~---~~~~d~~~l~~~l~~-~~~ 165 (388)
T 1j32_A 105 NLMLAMI-----------EPGDEVIIPAPFWVSYPEMVKLAEGTPVI----LPTTVET---QFKVSPEQIRQAITP-KTK 165 (388)
T ss_dssp HHHHHHC-----------CTTCEEEEESSCCTHHHHHHHHTTCEEEE----ECCCGGG---TTCCCHHHHHHHCCT-TEE
T ss_pred HHHHHhc-----------CCCCEEEEcCCCChhHHHHHHHcCCEEEE----ecCCccc---CCCCCHHHHHHhcCc-Cce
Confidence 9999774 15789999999999977544332221110 1111100 01 279999999975 466
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc----ccccc--cCCcccEEEecccCC-Ccc
Q 012363 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL----WAHEH--YGIFPDIMTLAKPLA-GGL 321 (465)
Q Consensus 249 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~----~~~~~--~~~~pdi~t~sK~lg-~G~ 321 (465)
+|++++.++.+|.+ ++++.+++|.++|++||+++|+||+|+++.+.|.. ..+.. ++..+++.++||.++ .|+
T Consensus 166 ~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~ 244 (388)
T 1j32_A 166 LLVFNTPSNPTGMV-YTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGW 244 (388)
T ss_dssp EEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTT
T ss_pred EEEEeCCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCccc
Confidence 66655555555654 57889999999999999999999999998665531 11211 345567779999998 589
Q ss_pred ceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeecc-ce
Q 012363 322 PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGL-GL 400 (465)
Q Consensus 322 ~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-g~ 400 (465)
|+|++++++++++.+.......+++.+++++.++.++|+.. +++.+++++.....++.+.+.+.+++.+....+. |.
T Consensus 245 r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~ 322 (388)
T 1j32_A 245 RVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENS--QDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAF 322 (388)
T ss_dssp CCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSC--SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTT
T ss_pred ceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCeeE
Confidence 99999999999888765445567888999999999988743 3334444444444444555544555433333333 45
Q ss_pred EEEEEec---CChHHHHHHHHH-CCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012363 401 IIGIEFD---VSATPVVDACRD-SGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 401 ~~~i~~~---~~~~~~~~~l~~-~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
++++.+. .+..++.+.|++ +||.+.++. .++++|++++ ++++++++++++|+++++++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~i~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 323 YMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA--TDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp EECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence 5566553 356789999986 799998863 1378999875 68999999999999998764
No 74
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=100.00 E-value=2.2e-32 Score=277.10 Aligned_cols=340 Identities=11% Similarity=0.089 Sum_probs=240.3
Q ss_pred eeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcc-cccCC--CCCHHHHHHHHHHHhhcC----CCeEE
Q 012363 87 GKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-HVSNM--YYSIPQIELAKRLVACSF----ADRVF 159 (465)
Q Consensus 87 ~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~-~~~~~--~~~~~~~~la~~l~~~~~----~~~v~ 159 (465)
.....+++.+|+++|||.++.. +++ .+|.|++++.+++.... ..+.. +..+.++++++++.+.++ .++|+
T Consensus 33 ~~~~~~~~~~g~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~ 109 (437)
T 3g0t_A 33 ALVTNLEKATGTKFCRMEMGVP--GLP-APQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACV 109 (437)
T ss_dssp HHHHHHHHHHTCCCEECCCCSC--CSC-CCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEE
T ss_pred HHHHHHHHhcCCCEEeccCcCC--CCC-CCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEE
Confidence 4445566778999999999976 455 78999999999887522 11111 112335566666655433 67999
Q ss_pred ecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc--eEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC----
Q 012363 160 FSNTGTEANEAAIKFARKFQRHSNPDSKEPAT--EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG---- 233 (465)
Q Consensus 160 ~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~--~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 233 (465)
+|+||++|+..+++.+..+ + +++ +|++.+|+|+++...+...+.. +..+|.+
T Consensus 110 ~t~g~t~al~~~~~~l~~~-~--------~gd~~~Vl~~~p~~~~~~~~~~~~g~~-------------~~~v~~~~~~~ 167 (437)
T 3g0t_A 110 PTVGSMQGCFVSFLVANRT-H--------KNREYGTLFIDPGFNLNKLQCRILGQK-------------FESFDLFEYRG 167 (437)
T ss_dssp EESHHHHHHHHHHHHHTTS-C--------TTCSCCEEEEESCCHHHHHHHHHHTCC-------------CEEEEGGGGCT
T ss_pred EeCCHHHHHHHHHHHHhcC-C--------CCCccEEEEeCCCcHhHHHHHHHcCCE-------------EEEEeecCCCC
Confidence 9999999999999876410 1 577 8999999999987655443322 2222221
Q ss_pred --CHHHHHhhcC-CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc---------ccc
Q 012363 234 --NIEATRKLIQ-PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL---------WAH 301 (465)
Q Consensus 234 --d~~~le~~l~-~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~---------~~~ 301 (465)
|+++|+++++ ++..++++++|.|++ |. ..+.+.+++|.++|++||++||+||+|+++.+.+.. ..+
T Consensus 168 ~~d~~~l~~~l~~~~~~~v~l~~p~npt-G~-~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 245 (437)
T 3g0t_A 168 EKLREKLESYLQTGQFCSIIYSNPNNPT-WQ-CMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSV 245 (437)
T ss_dssp THHHHHHHHHHTTTCCCEEEEESSCTTT-CC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCG
T ss_pred ccCHHHHHHHHhcCCceEEEEeCCCCCC-CC-cCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhcc
Confidence 7899999994 433445556775444 44 457888999999999999999999999986544321 122
Q ss_pred cc-cCCcccEEEecccCC-CccceeeEEeCHHHHh-h-----------------ccCCCCcCCCCChHHHHHHHHHHHHH
Q 012363 302 EH-YGIFPDIMTLAKPLA-GGLPIGAALVTEKVAS-A-----------------INYGDHGSTFAGSPLVCNAAIAVLDK 361 (465)
Q Consensus 302 ~~-~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i~~-~-----------------~~~~~~~~t~~~~~~~~~aa~a~L~~ 361 (465)
.. .+....+.++||.++ .|+|+||+++++++++ . +.......+++.++++++++.++|+.
T Consensus 246 ~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~ 325 (437)
T 3g0t_A 246 ANYTDNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKA 325 (437)
T ss_dssp GGTCSCEEEEEESTTTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCccCCCCccceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhC
Confidence 21 344445668999999 6999999999999998 7 65444455778899999999999987
Q ss_pred hcC-----chHHHHHHHHHHHHHHHHHHHHHcCCCceee-------e-ccceEEEEEec-CChHHHHHHHHHCCceEeec
Q 012363 362 ISN-----PAFLASVSKKGHYFKETLKQKLARNPHVKDV-------R-GLGLIIGIEFD-VSATPVVDACRDSGLLVLTA 427 (465)
Q Consensus 362 ~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-------~-~~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~ 427 (465)
... +...++++++.+++.+.| .+++ +... + ..|.++++.++ .+..++.+.|.++||.+.++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~l~~~L----~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~ 400 (437)
T 3g0t_A 326 CNDGEYNFRDSVIEYGRKARIMKKMF----LDNG-FNIVYDKDGNEPLADGFYFTVGYKGMDSSKLIEKFVRYGMCAITL 400 (437)
T ss_dssp HHTTSCCHHHHHHHHHHHHHHHHHHH----HTTT-EEESSCEETTEECCSSSEEEEEETTCCHHHHHHHHHHTTEECEES
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHH----HHcC-CEEeccccCCCCCceeEEEEEecCCCCHHHHHHHHHHcCeEEeec
Confidence 532 234444455555555444 4443 2222 4 56788888884 56788999999999999886
Q ss_pred CC-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012363 428 GK-----GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 428 ~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
.. ++++|++++.. +++++++++++|++++++
T Consensus 401 ~~~~~~~~~~iRis~~~~-~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 401 KTTGSKRNEAMRICTSLL-PESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp TTTTCCCTTCEEEECSSS-CGGGHHHHHHHHHHHHHH
T ss_pred cccCCCCCCEEEEEEecC-CHHHHHHHHHHHHHHHhc
Confidence 42 16799998844 999999999999988753
No 75
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=100.00 E-value=7.7e-32 Score=268.85 Aligned_cols=338 Identities=12% Similarity=0.062 Sum_probs=229.8
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCC--CCCHHHHHHHHHHHhhcC----CCe-EEecCCHHHHHHHH
Q 012363 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM--YYSIPQIELAKRLVACSF----ADR-VFFSNTGTEANEAA 171 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~la~~l~~~~~----~~~-v~~~~sG~eA~~~a 171 (465)
.++||.++.. .++ .+|.+.+++.+++++....+.. ...+.+.++++++.+.++ .++ |++|+||++|+..+
T Consensus 27 ~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~ 103 (389)
T 1gd9_A 27 DVISLGIGEP--DFD-TPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMG 103 (389)
T ss_dssp SCEECCCCSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHH
T ss_pred CeEecCCCCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHH
Confidence 5789988865 466 6899999999998763221111 123345666666655445 578 99999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC-CCHHHHHhhcCCCCeEEE
Q 012363 172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-GNIEATRKLIQPGKTAAV 250 (465)
Q Consensus 172 l~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~a~v 250 (465)
++.+. .++++|++.+|+||++...+...+..... .+...+. .+ -|+++|++++++ ++++|
T Consensus 104 ~~~~~-----------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~----v~~~~~~---~~~~d~~~l~~~l~~-~~~~v 164 (389)
T 1gd9_A 104 LSAFL-----------KDGEEVLIPTPAFVSYAPAVILAGGKPVE----VPTYEED---EFRLNVDELKKYVTD-KTRAL 164 (389)
T ss_dssp HTTTC-----------CTTCEEEEEESCCTTHHHHHHHHTCEEEE----EECCGGG---TTCCCHHHHHHHCCT-TEEEE
T ss_pred HHHhC-----------CCCCEEEEcCCCchhHHHHHHHCCCEEEE----eccCCcc---CCCCCHHHHHHhcCc-CceEE
Confidence 98653 15889999999999987554333321110 0111100 01 189999999975 46666
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc-ccccccc-CC-ccc--EEEecccCC-Ccccee
Q 012363 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAHEHY-GI-FPD--IMTLAKPLA-GGLPIG 324 (465)
Q Consensus 251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~-~~~~~~~-~~-~pd--i~t~sK~lg-~G~~iG 324 (465)
+++..++++|. .++.+.+++|.++|++||+++|+||+|+++.+.|. ......+ +. ..| +.++||.++ +|+|+|
T Consensus 165 ~~~~~~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 243 (389)
T 1gd9_A 165 IINSPCNPTGA-VLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLG 243 (389)
T ss_dssp EEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCE
T ss_pred EEECCCCCCCc-CCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceE
Confidence 66544444554 45788999999999999999999999999866554 2222222 21 234 557999998 689999
Q ss_pred eEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEE
Q 012363 325 AALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGI 404 (465)
Q Consensus 325 ~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i 404 (465)
++++++++++.+.......+++.+++++.++.++|+....+.+.+++++.....++.+.+.+.+++.....+..|.++++
T Consensus 244 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 323 (389)
T 1gd9_A 244 FVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFYIFP 323 (389)
T ss_dssp EEECCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBTTEECC
T ss_pred EEEECHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCeecCCCeeeEEEE
Confidence 99999999888865445567888999999999888753221234444444334444444433333321112233566777
Q ss_pred Eec---CChHHHHHHHH-HCCceEeecC-----CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012363 405 EFD---VSATPVVDACR-DSGLLVLTAG-----KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 405 ~~~---~~~~~~~~~l~-~~Gv~v~~~~-----~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
.++ .+..++.+.|+ ++||.+.++. .++++||+++. +++++++++++|.+++++.+
T Consensus 324 ~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~--~~~~i~~~l~~l~~~~~~~~ 387 (389)
T 1gd9_A 324 RIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT--AYEKLEEAMDRMERVLKERK 387 (389)
T ss_dssp BCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS--CHHHHHHHHHHHHHHHHHTT
T ss_pred eccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHhcc
Confidence 763 35778999998 8999998763 13689998774 89999999999999987643
No 76
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=7.8e-32 Score=269.03 Aligned_cols=333 Identities=17% Similarity=0.159 Sum_probs=234.4
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC--CCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHHH
Q 012363 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN--MYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANE 169 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~ 169 (465)
.|++++||.++.+ .+++ +|.+.+++.++++.....+. .+..+.++++++++.+.++ .++|++++||++|+.
T Consensus 39 ~g~~~i~l~~~~~--~~~~-~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~ 115 (389)
T 1o4s_A 39 KGEDVINLTAGEP--DFPT-PEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALF 115 (389)
T ss_dssp TTCCCEECCCSSC--SSCC-CHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEEccCCCC--CCCC-CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHH
Confidence 4778899998865 5674 79999999998875322111 1122335566666654434 578999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC-CCHHHHHhhcCCCCeE
Q 012363 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-GNIEATRKLIQPGKTA 248 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~a 248 (465)
.+++.+. .++++|++.+|+|+++...+...+..... .+...+. .+ .|+++|++++++ +++
T Consensus 116 ~~~~~l~-----------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~----v~~~~~~---~~~~d~~~l~~~l~~-~~~ 176 (389)
T 1o4s_A 116 NAFMALL-----------DPGDEVIVFSPVWVSYIPQIILAGGTVNV----VETFMSK---NFQPSLEEVEGLLVG-KTK 176 (389)
T ss_dssp HHHHHHC-----------CTTCEEEEEESCCTTHHHHHHHTTCEEEE----EECCGGG---TTCCCHHHHHHTCCT-TEE
T ss_pred HHHHHhC-----------CCCCEEEEcCCCchhHHHHHHHcCCEEEE----EecCCcc---CCCCCHHHHHHhccc-Cce
Confidence 9999764 15789999999999987554333221110 0111100 01 178999999975 466
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccc----cCCcccEEEecccCC-Cccce
Q 012363 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEH----YGIFPDIMTLAKPLA-GGLPI 323 (465)
Q Consensus 249 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~----~~~~pdi~t~sK~lg-~G~~i 323 (465)
+|+++..++.+|. .++++++++|.++|++||++||+||+|+++.+.|....... .+....+.++||+++ .|+|+
T Consensus 177 ~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~ 255 (389)
T 1o4s_A 177 AVLINSPNNPTGV-VYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRV 255 (389)
T ss_dssp EEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCC
T ss_pred EEEEcCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccce
Confidence 6666554555565 45789999999999999999999999998866553222222 233344568999998 68999
Q ss_pred eeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEE
Q 012363 324 GAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIG 403 (465)
Q Consensus 324 G~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~ 403 (465)
|++++++++++.+.......+++.+++++.++.++|+.. .+++.++++++.+++.+.|+++ .+... .+..|.+++
T Consensus 256 G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~l~~~L~~~--g~~~~--~~~~~~~~~ 330 (389)
T 1o4s_A 256 GYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVVERLKKM--GVKFV--EPEGAFYLF 330 (389)
T ss_dssp EEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHT--TCCCC--CCSBSSEEE
T ss_pred EEEEeCHHHHHHHHHHhhhcccCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHhc--CCeee--cCCcceEEE
Confidence 999999999888765444557788999999988888643 3556677777777777777664 33221 122366677
Q ss_pred EEecCChHHHHHHHH-HCCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012363 404 IEFDVSATPVVDACR-DSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 404 i~~~~~~~~~~~~l~-~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
+.++.+..++.+.|+ ++||.+.++. .++++|++++ .+++++++++++|.++++
T Consensus 331 ~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~--~~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 331 FKVRGDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFA--TSIERLTEALDRIEDFLN 387 (389)
T ss_dssp EECSSCHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred EeCCCCHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 776445678999998 8999998763 1368999877 389999999999998874
No 77
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=100.00 E-value=9.1e-32 Score=267.63 Aligned_cols=327 Identities=15% Similarity=0.104 Sum_probs=229.1
Q ss_pred EEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCH-HHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHH
Q 012363 100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI-PQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFAR 176 (465)
Q Consensus 100 ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~-~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~ 176 (465)
++||.++.+ .++ .+|.+.+++.+++++ .. .|+.. ...++++.++++++ .++|++++||++|++.+++.+.
T Consensus 27 ~i~l~~~~~--~~~-~~~~v~~a~~~~~~~-~~---~y~~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~ 99 (381)
T 1v2d_A 27 AVNLGQGFP--SNP-PPPFLLEAVRRALGR-QD---QYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV 99 (381)
T ss_dssp CEECCCCSC--SSC-CCHHHHHHHHHHTTT-SC---SCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC
T ss_pred eEEecCCCC--CCC-CCHHHHHHHHHHHHH-hc---CCCCCCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC
Confidence 689988865 455 789999999998875 11 22222 35688888888887 4689999999999999999774
Q ss_pred HHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCC--CCceEeeCCCHHHHHhhcCCCCeEEEEEcc
Q 012363 177 KFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM--PGVNFVEYGNIEATRKLIQPGKTAAVFVEP 254 (465)
Q Consensus 177 ~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~le~~l~~~~~a~vi~ep 254 (465)
.++++|++.+|+||++...+...+.... . .+.. +.. . ..|+++|++++++ ++++|++++
T Consensus 100 -----------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~-~---v~~~~~~~~-~--~~d~~~l~~~l~~-~~~~v~~~~ 160 (381)
T 1v2d_A 100 -----------GPGDEVVVLEPFFDVYLPDAFLAGAKAR-L---VRLDLTPEG-F--RLDLSALEKALTP-RTRALLLNT 160 (381)
T ss_dssp -----------CTTCEEEEEESCCTTHHHHHHHTTCEEE-E---EECEEETTE-E--ECCHHHHHTTCCT-TEEEEEEES
T ss_pred -----------CCCCEEEEcCCCchhHHHHHHHcCCEEE-E---EeCCCCCcc-C--CcCHHHHHHhcCc-CCEEEEECC
Confidence 1588999999999998754332221111 0 1111 000 0 1389999999975 567777665
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc-ccccc--ccCCcccEEEecccCC-CccceeeEEeCH
Q 012363 255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAHE--HYGIFPDIMTLAKPLA-GGLPIGAALVTE 330 (465)
Q Consensus 255 ~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~-~~~~~--~~~~~pdi~t~sK~lg-~G~~iG~v~~~~ 330 (465)
.++.+|.+ ++.+++++|.++|++||+++|+||+|+++.+ |. ..... ..+..+++.++||.++ .|+|+|++++++
T Consensus 161 ~~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~ 238 (381)
T 1v2d_A 161 PMNPTGLV-FGERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPK 238 (381)
T ss_dssp SCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCT
T ss_pred CCCCCCCc-cCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHhcCCCEEEEeechhhcCCcccceEEEEeCH
Confidence 55555654 5789999999999999999999999998744 32 11111 3466777889999998 589999999999
Q ss_pred HHHhhccCCCCcCCCCChHHHHHHHHHHHHHh--cC--chHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEe
Q 012363 331 KVASAINYGDHGSTFAGSPLVCNAAIAVLDKI--SN--PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF 406 (465)
Q Consensus 331 ~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~--~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~ 406 (465)
++++.+.......+++.++++++++.++|+.. .+ ++..++++++.+++.+.|++ .+.....+..|.++++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~~~~~~~~~ 314 (381)
T 1v2d_A 239 EFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRA----MGLRVYVPEGTYFLMAEL 314 (381)
T ss_dssp TTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH----TTCCEECCSBSSEEEEEC
T ss_pred HHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHH----CCCEecCCCcceEEEEec
Confidence 88887764434456788999999999999865 22 23445555566666655554 232212223367788887
Q ss_pred cCChHHHHHHHHHCCceEeecC-------CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012363 407 DVSATPVVDACRDSGLLVLTAG-------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 407 ~~~~~~~~~~l~~~Gv~v~~~~-------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
+.. . +.+.|.++||.+.++. .++++||+++. +++++++++++|++++++.++
T Consensus 315 ~~~-~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~~r~ 373 (381)
T 1v2d_A 315 PGW-D-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK--TEEELHLALERLGRVVNSPRE 373 (381)
T ss_dssp TTC-C-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS--CHHHHHHHHHHHHHHC-----
T ss_pred ChH-h-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC--CHHHHHHHHHHHHHHHhhccc
Confidence 432 2 6677789999998752 13689999875 899999999999999887654
No 78
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=100.00 E-value=2.7e-32 Score=273.86 Aligned_cols=336 Identities=15% Similarity=0.090 Sum_probs=230.9
Q ss_pred CCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhc-ccccC--CCCCHHHHHHHHHHHhhcC----C-CeEEecCCHHH
Q 012363 95 AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL-THVSN--MYYSIPQIELAKRLVACSF----A-DRVFFSNTGTE 166 (465)
Q Consensus 95 ~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~-~~~~~--~~~~~~~~~la~~l~~~~~----~-~~v~~~~sG~e 166 (465)
..|+++|||.++.+ .+| .+|.|++++.+++++. ...+. ....+.++++++++.+.++ + ++|++++||++
T Consensus 44 ~~g~~~idl~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~ 120 (404)
T 2o1b_A 44 HGPLPLINMAVGIP--DGP-TPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKN 120 (404)
T ss_dssp CCSSCCEECCCCSC--SSC-CCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHH
T ss_pred cCCCCEEecCCcCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHH
Confidence 35788999999876 567 6899999999987542 11111 1222335555555555446 2 68999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCC-CceEeeCCCHHHHHhhcCCC
Q 012363 167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP-GVNFVEYGNIEATRKLIQPG 245 (465)
Q Consensus 167 A~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~ 245 (465)
|+..+++.+. .++++|++.+|+||++...+...+..... .+... +.. .|+++|++++++
T Consensus 121 al~~~~~~l~-----------~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~----v~~~~~~~~----~d~~~l~~~l~~- 180 (404)
T 2o1b_A 121 GLVAVPTCVI-----------NPGDYVLLPDPGYTDYLAGVLLADGKPVP----LNLEPPHYL----PDWSKVDSQIID- 180 (404)
T ss_dssp HHHHHHHHHC-----------CTTCEEEEEESCCSSHHHHHHHTTCEEEE----EECCTTTCC----CCGGGSCHHHHH-
T ss_pred HHHHHHHHhc-----------CCCCEEEEcCCCchhHHHHHHHCCCEEEE----eccCcccCc----CCHHHHHHhhcc-
Confidence 9999999764 15789999999999987655443322111 11111 111 277888888753
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccc-cc---cCCcccEEEecccCC-Cc
Q 012363 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH-EH---YGIFPDIMTLAKPLA-GG 320 (465)
Q Consensus 246 ~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~-~~---~~~~pdi~t~sK~lg-~G 320 (465)
++++|+++..++++|. .++.+++++|.++|++||++||+||+|++|.+.|..... .. .+..+.+.++||.++ +|
T Consensus 181 ~~~~v~l~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G 259 (404)
T 2o1b_A 181 KTKLIYLTYPNNPTGS-TATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSG 259 (404)
T ss_dssp HEEEEEECSSCTTTCC-CCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGG
T ss_pred CceEEEEcCCCCCCCc-cCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCch
Confidence 4667666533444454 458899999999999999999999999988665532111 11 233455668999998 68
Q ss_pred cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeec-cc
Q 012363 321 LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRG-LG 399 (465)
Q Consensus 321 ~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~g 399 (465)
+|+||+++++++++.+.......+++.++++++++.++|+.. +++.+++++.....++.+.+.+.+++. ...++ .|
T Consensus 260 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~g 336 (404)
T 2o1b_A 260 FRVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHY--DDFLEEQSNVFKTRRDRFEAMLAKADL-PFVHAKGG 336 (404)
T ss_dssp GCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHTTC-CEECCCBS
T ss_pred hheEeEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhcCC-eecCCCcc
Confidence 999999999999988865444556788999999999999863 334444444444444444444444432 23333 35
Q ss_pred eEEEEEec--CChHHHHHHHH-HCCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012363 400 LIIGIEFD--VSATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 400 ~~~~i~~~--~~~~~~~~~l~-~~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
.++++.++ .+..++.+.|+ ++||.+.++.. .+++||+++. +++++++++++|++++++
T Consensus 337 ~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~e~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 337 IYVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL--DDQKLDEAAIRLTELAYL 402 (404)
T ss_dssp SEEEEECCTTCCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS--CTTHHHHHHHHHHGGGGG
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 66888874 24578889887 57999987531 3789998875 788999999999988764
No 79
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=100.00 E-value=1.3e-31 Score=268.08 Aligned_cols=332 Identities=13% Similarity=0.111 Sum_probs=233.9
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcc----c-c-cCCCCCHHHHHHHHHHHhhcC----CCeEEecCCHHH
Q 012363 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT----H-V-SNMYYSIPQIELAKRLVACSF----ADRVFFSNTGTE 166 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~----~-~-~~~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~e 166 (465)
|+++|||.++.. .+ ..+|.+++++.+++.+.. + + ...+..+.++++++++.+.++ .++|++|+||++
T Consensus 34 ~~~~i~l~~~~~--~~-~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~ 110 (398)
T 3ele_A 34 KENVYDFSIGNP--SI-PAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAA 110 (398)
T ss_dssp GGGCEECCSCCC--CS-CCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHH
T ss_pred CCCeEEeecCCC--CC-CCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHH
Confidence 467899998844 22 378999999999987631 1 1 111223446677777766554 679999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCC-ceEEEEcCCcccCccccccccCCCCcCCCCCCCCC-CceEeeCCCHHHHHhhcCC
Q 012363 167 ANEAAIKFARKFQRHSNPDSKEPA-TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP-GVNFVEYGNIEATRKLIQP 244 (465)
Q Consensus 167 A~~~al~~a~~~t~~~~~~~~~~~-~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~ 244 (465)
|+..+++.+.. ++ ++|++.+|+|+++...+...+...... +... +.. -|+++|++++++
T Consensus 111 al~~~~~~l~~-----------~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v----~~~~~~~~----~d~~~l~~~l~~ 171 (398)
T 3ele_A 111 SLSICFRALTS-----------DAYDEFITIAPYFPEYKVFVNAAGARLVEV----PADTEHFQ----IDFDALEERINA 171 (398)
T ss_dssp HHHHHHHHHCC-----------STTCEEEEESSCCTHHHHHHHHTTCEEEEE----CCCTTTSS----CCHHHHHHTCCT
T ss_pred HHHHHHHHHcC-----------CCCCEEEEeCCCchhhHHHHHHcCCEEEEE----ecCCcCCc----CCHHHHHHHhCc
Confidence 99999997741 57 899999999999876554433221111 1111 111 189999999975
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH------hCCEEEEeccccCCCCCCcc--ccccccCCcccEEEeccc
Q 012363 245 GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDD------AGALLVFDEVQCGLGRTGYL--WAHEHYGIFPDIMTLAKP 316 (465)
Q Consensus 245 ~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~------~g~llI~DEv~~g~gr~g~~--~~~~~~~~~pdi~t~sK~ 316 (465)
++++|+++..++++|. .++.+.+++|.++|++ ||++||+||+|++|.+.|.. .....++..+.+.++||.
T Consensus 172 -~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~ 249 (398)
T 3ele_A 172 -HTRGVIINSPNNPSGT-VYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKS 249 (398)
T ss_dssp -TEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTT
T ss_pred -CCCEEEEcCCCCCCCC-CCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhc
Confidence 4666665443444454 4578889999999999 99999999999998776632 222344555666789999
Q ss_pred CC-CccceeeEEeCHHHHh------hccCC-CCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHc
Q 012363 317 LA-GGLPIGAALVTEKVAS------AINYG-DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLAR 388 (465)
Q Consensus 317 lg-~G~~iG~v~~~~~i~~------~~~~~-~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 388 (465)
++ +|+|+||+++++++++ .+... ....+++.+++++.++.+.++ .....++++++.+++.+.|+++ .
T Consensus 250 ~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~l~~~L~~~--g 324 (398)
T 3ele_A 250 LSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQG---ATGDINAYKENRDLLYEGLTRI--G 324 (398)
T ss_dssp SSCTTTCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTT---CCCCHHHHHHHHHHHHHHHHHH--T
T ss_pred CCCccceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHc--C
Confidence 99 7999999999887443 22211 122466778888888776665 3345678888888888888775 2
Q ss_pred CCCceeeeccceEEEEEec-CChHHHHHHHHHCCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012363 389 NPHVKDVRGLGLIIGIEFD-VSATPVVDACRDSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 389 ~~~~~~~~~~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
. ....+..|.++++.++ .+..++.+.|.++||.+.++. .++++|++++ ++++++++++++|++++++++
T Consensus 325 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l~~~~ 397 (398)
T 3ele_A 325 Y--HCFKPDGAFYMFVKALEDDSNAFCEKAKEEDVLIVAADGFGCPGWVRISYC--VDREMIKHSMPAFEKIYKKYN 397 (398)
T ss_dssp C--CEECCSBSSEEEEECSSSCHHHHHHHHHTTTEECEESGGGTCTTEEEEECC--SCHHHHHHHHHHHHHHHHHHC
T ss_pred C--eecCCCeeEEEEEEcCCCCHHHHHHHHHHCCEEEeCccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHhh
Confidence 2 1122233555888874 467789999999999998864 1478999875 699999999999999998765
No 80
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=100.00 E-value=1.5e-31 Score=269.79 Aligned_cols=340 Identities=13% Similarity=0.091 Sum_probs=237.4
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhcc---ccc-CCCCCHHHHHHHHHHHhhcC----C-CeEEecCCHHHHHH
Q 012363 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLT---HVS-NMYYSIPQIELAKRLVACSF----A-DRVFFSNTGTEANE 169 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~---~~~-~~~~~~~~~~la~~l~~~~~----~-~~v~~~~sG~eA~~ 169 (465)
.+|||..+.. .++ .+|.|++++.+++.+.. .+. ..+..+.++++++++.+.++ . ++|++|+||++|+.
T Consensus 29 ~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~ 105 (422)
T 3fvs_A 29 DVVNLGQGFP--DFP-PPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALF 105 (422)
T ss_dssp CCEECCCSSC--SSC-CCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHH
T ss_pred CceEeCCCCC--CCC-CCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHH
Confidence 5789988865 343 78999999999987632 111 11223446777777776655 2 68999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCC--CCC-----ceEeeCCCHHHHHhhc
Q 012363 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV--MPG-----VNFVEYGNIEATRKLI 242 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~d~~~le~~l 242 (465)
.+++.+. .++++|++.+|+||++...+...+...... +..+. ..+ ..+ .-|+++|++++
T Consensus 106 ~~~~~~~-----------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~-~~~~~~~~~G~~~~~~~~--~~d~~~l~~~~ 171 (422)
T 3fvs_A 106 TAFQALV-----------DEGDEVIIIEPFFDCYEPMTMMAGGRPVFV-SLKPGPIQNGELGSSSNW--QLDPMELAGKF 171 (422)
T ss_dssp HHHHHHC-----------CTTCEEEEEESCCTTHHHHHHHTTCEEEEE-ECBCCCCCSSSCCBGGGS--BCCHHHHHTTC
T ss_pred HHHHHHc-----------CCCCEEEEcCCCchhhHHHHHHcCCEEEEE-ecccccccccccccccCC--CCCHHHHHhhc
Confidence 9999764 168899999999999876554433222111 01000 000 000 02899999999
Q ss_pred CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-ccccc----cCCcccEEEecccC
Q 012363 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEH----YGIFPDIMTLAKPL 317 (465)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~~~~----~~~~pdi~t~sK~l 317 (465)
++ ++++|+++..++++|.+ ++++.+++|+++|++||++||+||+|++|.+.|.. ..... ++..+++.++||.+
T Consensus 172 ~~-~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~ 249 (422)
T 3fvs_A 172 TS-RTKALVLNTPNNPLGKV-FSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTF 249 (422)
T ss_dssp CT-TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHH
T ss_pred CC-CceEEEECCCCCCCCcC-CCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhcc
Confidence 75 46666665555555654 58899999999999999999999999998776642 12222 23335566899999
Q ss_pred C-CccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHH-----hcCchHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012363 318 A-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK-----ISNPAFLASVSKKGHYFKETLKQKLARNPH 391 (465)
Q Consensus 318 g-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~-----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 391 (465)
| +|+|+||+++++++++.+.......+++.++++++++.++|+. ...+++.+++++.....++.+.+.+.+++.
T Consensus 250 g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 329 (422)
T 3fvs_A 250 SATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGL 329 (422)
T ss_dssp TCGGGCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCccceEEEEEeCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8 6999999999999998886555567888999999999999985 222445555666666666666666666654
Q ss_pred ceeeeccceEEEEEecC-----C----------hHHHHHHHH-HCCceEeecC----------CCCEEEEecCCCCcHHH
Q 012363 392 VKDVRGLGLIIGIEFDV-----S----------ATPVVDACR-DSGLLVLTAG----------KGNVVRLVPPLIISEQE 445 (465)
Q Consensus 392 ~~~~~~~g~~~~i~~~~-----~----------~~~~~~~l~-~~Gv~v~~~~----------~~~~lRi~~~~~~t~e~ 445 (465)
....+..|.++++.+.. . ..+++..|+ ++||.+.++. ..+++||++. .++++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~--~~~e~ 407 (422)
T 3fvs_A 330 KPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFV--KDEAT 407 (422)
T ss_dssp EEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECC--CCHHH
T ss_pred eecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEec--CCHHH
Confidence 33445667788887721 1 447788766 4799998743 1378999755 49999
Q ss_pred HHHHHHHHHHHHHH
Q 012363 446 LDQAVEILCKTLPV 459 (465)
Q Consensus 446 i~~~l~~l~~~l~~ 459 (465)
|++++++|++++++
T Consensus 408 i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 408 LQAMDEKLRKWKVE 421 (422)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998865
No 81
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=100.00 E-value=2.5e-31 Score=264.94 Aligned_cols=330 Identities=15% Similarity=0.100 Sum_probs=230.3
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC--CCCCHHHHHHHHHHHhhcC----CC-eEEecCCHHHHHHHH
Q 012363 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN--MYYSIPQIELAKRLVACSF----AD-RVFFSNTGTEANEAA 171 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~----~~-~v~~~~sG~eA~~~a 171 (465)
.+|||.++.+ .+| .+|.+.+++.++++.....+. .+..+.++++++++.+.++ .+ +|++++||++|+..+
T Consensus 31 ~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~ 107 (386)
T 1u08_A 31 QAINLSQGFP--DFD-GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAA 107 (386)
T ss_dssp TCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHH
T ss_pred CeEEecCCCC--CCC-CCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHH
Confidence 4788988865 466 689999999999875211111 1123345666666655444 56 899999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEE
Q 012363 172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVF 251 (465)
Q Consensus 172 l~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi 251 (465)
++.+. .++++|++.+|+||++...+...+.... . .+...+. + ..|+++|++++++ ++++|+
T Consensus 108 ~~~~~-----------~~gd~vl~~~p~~~~~~~~~~~~g~~~~-~---v~~~~~~-~--~~d~~~l~~~l~~-~~~~v~ 168 (386)
T 1u08_A 108 ITALV-----------RNGDEVICFDPSYDSYAPAIALSGGIVK-R---MALQPPH-F--RVDWQEFAALLSE-RTRLVI 168 (386)
T ss_dssp HHHHC-----------CTTCEEEEEESCCTTHHHHHHHTTCEEE-E---EECCTTT-C--CCCHHHHHHHCCT-TEEEEE
T ss_pred HHHhC-----------CCCCEEEEeCCCchhHHHHHHHcCCEEE-E---eecCccc-C--cCCHHHHHHhhcc-cCEEEE
Confidence 99764 1578999999999987754433322111 0 0111100 0 1389999999974 566666
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc----cccc-ccCCcccEEEecccCC-Cccceee
Q 012363 252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL----WAHE-HYGIFPDIMTLAKPLA-GGLPIGA 325 (465)
Q Consensus 252 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~----~~~~-~~~~~pdi~t~sK~lg-~G~~iG~ 325 (465)
++..++.+|.+ ++.+++++|.++|++||+++|+||+|++|.+.|.. .... ..+..+.+.++||.++ .|+|+||
T Consensus 169 l~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~ 247 (386)
T 1u08_A 169 LNTPHNPSATV-WQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGY 247 (386)
T ss_dssp EESSCTTTCCC-CCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEE
T ss_pred EeCCCCCCCcc-CCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEE
Confidence 65545555654 57889999999999999999999999998665531 1221 2455666778999999 6899999
Q ss_pred EEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEE
Q 012363 326 ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIE 405 (465)
Q Consensus 326 v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~ 405 (465)
+++++++++.+.......+++.++++++++.++|+.. +++.+++++.....++.+.+.+.+++.....+..|.++++.
T Consensus 248 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~ 325 (386)
T 1u08_A 248 CVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAE--PEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVD 325 (386)
T ss_dssp EECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC--THHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCBSSEEEEE
T ss_pred EEcCHHHHHHHHHHHHhhccCCChHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCceEEEEEe
Confidence 9999999888765444457788899999999999864 34455555555555566665555554322223346788888
Q ss_pred ec----CChHHHHHHHH-HCCceEeecC-------CCCEEEEecCCCCcHHHHHHHHHHHHH
Q 012363 406 FD----VSATPVVDACR-DSGLLVLTAG-------KGNVVRLVPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 406 ~~----~~~~~~~~~l~-~~Gv~v~~~~-------~~~~lRi~~~~~~t~e~i~~~l~~l~~ 455 (465)
++ .+..++.+.|+ ++||.+.++. ..+++||+++ .++++|++++++|++
T Consensus 326 ~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~--~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 326 YSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA--KKESTLLAAAERLRQ 385 (386)
T ss_dssp CTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred cCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEc--CCHHHHHHHHHHHhh
Confidence 84 25678888887 6899998752 2368999876 489999999998864
No 82
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=100.00 E-value=1e-31 Score=265.29 Aligned_cols=322 Identities=15% Similarity=0.125 Sum_probs=226.3
Q ss_pred CCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHH
Q 012363 95 AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAI 172 (465)
Q Consensus 95 ~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al 172 (465)
.+|+.+|||.++.. +++ .+|+|++++.+++.+.......|+.....+++++++++++ .++|++|+||++|+..++
T Consensus 23 ~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~ 99 (360)
T 3hdo_A 23 PDIASWIKLNTNEN--PYP-PSPEVVKAILEELGPDGAALRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLI 99 (360)
T ss_dssp SCCTTSEECSSCCC--SSC-CCHHHHHHHHHHHTTTCGGGGSCCCSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHH
T ss_pred ccccceeeccCCCC--CCC-CCHHHHHHHHHHHhcccchhhcCCCCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHH
Confidence 47789999999865 455 7899999999998763211223333335688888888887 789999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC---CHHHHHhhcCCCCeEE
Q 012363 173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG---NIEATRKLIQPGKTAA 249 (465)
Q Consensus 173 ~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~le~~l~~~~~a~ 249 (465)
+.+. .++++|++.+|+|+++...+...+... ..+|.+ +++++++.++ ...+
T Consensus 100 ~~l~-----------~~gd~Vl~~~p~~~~~~~~~~~~g~~~-------------~~v~~~~~~~~~~l~~~~~--~~~v 153 (360)
T 3hdo_A 100 RAFA-----------AEGEEIGYVHPSYSYYGTLAEVQGARV-------------RTFGLTGDFRIAGFPERYE--GKVF 153 (360)
T ss_dssp HHHC-----------CTTCEEEEESSSCTHHHHHHHHHTCEE-------------EEECBCTTSSBTTCCSSBC--SSEE
T ss_pred HHHh-----------CCCCEEEEcCCChHHHHHHHHHCCCEE-------------EEeeCCCCCCHHHHHhhcC--CCEE
Confidence 9664 168899999999998876554443221 122221 1223333232 2244
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCC-CccceeeEEe
Q 012363 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAALV 328 (465)
Q Consensus 250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~ 328 (465)
++++| ++++|.+.+ +++|.++|+++|++||+||+|++|...+.....+..+..+.+.++||.++ +|+|+||+++
T Consensus 154 ~i~~p-~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 228 (360)
T 3hdo_A 154 FLTTP-NAPLGPSFP----LEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGMRIGLAIA 228 (360)
T ss_dssp EEESS-CTTTCCCCC----HHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEEC
T ss_pred EEeCC-CCCCCCCcC----HHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCccceeeEee
Confidence 44555 444565555 67889999999999999999998743322222233455566778999998 6899999999
Q ss_pred CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec-
Q 012363 329 TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD- 407 (465)
Q Consensus 329 ~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~- 407 (465)
++++++.+... ..+++.|+++++++.++|+. .++.++.++.....++.+.+.+.+++ +...++.|.++++.++
T Consensus 229 ~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~ 302 (360)
T 3hdo_A 229 RPEVIAALDKI--RDHYNLDRLAQAACVAALRD---QAYLSECCRRIRETREWFTTELRSIG-YDVIPSQGNYLFATPPD 302 (360)
T ss_dssp CHHHHHHHHHH--SCSCCSCHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHTT-CEECCCSSSEEEEECTT
T ss_pred CHHHHHHHHHh--CCCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHHCC-CEEcCCCccEEEEECCC
Confidence 99999888643 24578999999999999984 33344444444444444444444443 3445677888888874
Q ss_pred CChHHHHHHHHHCCceEeecCC---CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012363 408 VSATPVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 408 ~~~~~~~~~l~~~Gv~v~~~~~---~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
.+..++.+.|.++||.+.+++. ++++|++++ +++|+++++++|+++.+.
T Consensus 303 ~~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~e~~~l~~al~~~~~~ 354 (360)
T 3hdo_A 303 RDGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG---TREEMEQTLAALKEIGEG 354 (360)
T ss_dssp CCHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC---CHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHhcc
Confidence 4678899999999999987642 478999865 899999999999877543
No 83
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=100.00 E-value=2.2e-31 Score=263.88 Aligned_cols=322 Identities=15% Similarity=0.119 Sum_probs=224.7
Q ss_pred EecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhh------cC--CCeEEecCCHHHHHHHHH
Q 012363 101 LDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVAC------SF--ADRVFFSNTGTEANEAAI 172 (465)
Q Consensus 101 lD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~------~~--~~~v~~~~sG~eA~~~al 172 (465)
|||.++.+ ++| .+|++.+++.+++++.......|+.....++++.++++ .+ .++|++++|+++|+..++
T Consensus 33 idl~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~ 109 (369)
T 3cq5_A 33 IRLNTNEN--PYP-PSEALVADLVATVDKIATELNRYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLL 109 (369)
T ss_dssp EECSSCCC--CSC-CCHHHHHHHHHHHHHHGGGTTSCCCTTCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHH
T ss_pred eeccCCCC--CCC-CCHHHHHHHHHHHHhcccccccCCCccHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHH
Confidence 89998865 566 78999999999987631111222222223555555554 33 578999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEE
Q 012363 173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV 252 (465)
Q Consensus 173 ~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ 252 (465)
+.+.. ++++|++.+|+||++...+...+...... +...+. ..|++++++++++.++++|++
T Consensus 110 ~~l~~-----------~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v----~~~~~~----~~d~~~l~~~i~~~~~~~v~~ 170 (369)
T 3cq5_A 110 QAFGG-----------PGRTALGFQPSYSMHPILAKGTHTEFIAV----SRGADF----RIDMDVALEEIRAKQPDIVFV 170 (369)
T ss_dssp HHHCS-----------TTCEEEEEESSCTHHHHHHHHTTCEEEEE----ECCTTS----SCCHHHHHHHHHHHCCSEEEE
T ss_pred HHhcC-----------CCCEEEEcCCChHHHHHHHHHcCCEEEEe----cCCcCC----CCCHHHHHHHhhccCCCEEEE
Confidence 87641 57899999999998876544333221110 111110 127899999886424567777
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccc-cccC-CcccEEEecccCC-CccceeeEEeC
Q 012363 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH-EHYG-IFPDIMTLAKPLA-GGLPIGAALVT 329 (465)
Q Consensus 253 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~-~~~~-~~pdi~t~sK~lg-~G~~iG~v~~~ 329 (465)
++.++++|.+. + ++++.++|+.+++++|+||+|+++++....... +.++ ..+++.++||+++ +|+|+|+++++
T Consensus 171 ~~~~nptG~~~-~---~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 246 (369)
T 3cq5_A 171 TTPNNPTGDVT-S---LDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVAN 246 (369)
T ss_dssp ESSCTTTCCCC-C---HHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEEC
T ss_pred eCCCCCCCCCC-C---HHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeC
Confidence 66666667665 4 566666777777999999999988643222221 3334 4566778999998 68999999999
Q ss_pred HHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC
Q 012363 330 EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS-NPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV 408 (465)
Q Consensus 330 ~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~ 408 (465)
+++++.+... ..+|+.|+++++++.++|+..+ -++..++++++.+++.+.|++. + +...++.|.++++.++.
T Consensus 247 ~~~~~~l~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g-~~~~~~~~~~~~~~~~~ 319 (369)
T 3cq5_A 247 PAFIDAVMLV--RLPYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL----G-YAVVPSESNFVFFGDFS 319 (369)
T ss_dssp THHHHHHHTT--SCTTCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH----T-CEEECCSSSEEEEECCS
T ss_pred HHHHHHHHHc--CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC----C-CEECCCCCeEEEEECCC
Confidence 9998888743 3457789999999999998421 1334455556666666666552 2 33346678888888755
Q ss_pred ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012363 409 SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 409 ~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
+..++.+.|.++||.+.+++.++++|++++ +++|+++++++|++++.
T Consensus 320 ~~~~l~~~l~~~gi~v~~~~~~~~iRis~~---~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 320 DQHAAWQAFLDRGVLIRDVGIAGHLRTTIG---VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp SHHHHHHHHHHTTEECBCCSCTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCEEEEECCCCCeEEEEeC---CHHHHHHHHHHHHHHHh
Confidence 677899999999999988744478999876 78999999999998763
No 84
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=4.4e-31 Score=265.34 Aligned_cols=329 Identities=14% Similarity=0.108 Sum_probs=229.0
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC--CCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHHH
Q 012363 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN--MYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANE 169 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~ 169 (465)
+|++++||.++.+ .++ .+|.+++++ ++++.....+. .+..+.++++++++.+.++ .++|++|+||++|+.
T Consensus 41 ~g~~~i~l~~~~~--~~~-~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~ 116 (409)
T 2gb3_A 41 RGVRIHHLNIGQP--DLK-TPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAIL 116 (409)
T ss_dssp TTCEEEECSSCCC--CSC-CCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEeccCCCC--CCC-CCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHH
Confidence 5788999998876 456 578999999 88865321111 1123345666666655443 478999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC-----C-HHHHHhhcC
Q 012363 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----N-IEATRKLIQ 243 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d-~~~le~~l~ 243 (465)
.+++.+. .++++|++.+|+||++...+...+.. +..+|.+ + +++|+++++
T Consensus 117 ~~~~~~~-----------~~gd~Vl~~~~~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~~~~l~~~l~ 172 (409)
T 2gb3_A 117 FSFAVIA-----------NPGDEILVLEPFYANYNAFAKIAGVK-------------LIPVTRRMEEGFAIPQNLESFIN 172 (409)
T ss_dssp HHHHHHC-----------CTTCEEEEEESCCTHHHHHHHHHTCE-------------EEEEECCGGGTSCCCTTGGGGCC
T ss_pred HHHHHhC-----------CCCCEEEEcCCCchhHHHHHHHcCCE-------------EEEeccCCCCCCccHHHHHHhhC
Confidence 9999764 15889999999999887644333221 1222221 1 678888887
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCC-cccEE--EecccCC-C
Q 012363 244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI-FPDIM--TLAKPLA-G 319 (465)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~-~pdi~--t~sK~lg-~ 319 (465)
+ ++++|++++.++.+|.+ ++.+++++|.++|++||++||+||+|+++.+.|..... ..++ ..|++ ++||.++ +
T Consensus 173 ~-~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~g~~ 249 (409)
T 2gb3_A 173 E-RTKGIVLSNPCNPTGVV-YGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA-LSIESDKVVVIDSVSKKFSAC 249 (409)
T ss_dssp T-TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG-GGSCCTTEEEEEESTTTTTCG
T ss_pred c-CCeEEEECCCCCCCCCC-cCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc-cccCCCCEEEEecchhccCCc
Confidence 5 56666666555555654 57899999999999999999999999988665543222 1122 23544 7899998 5
Q ss_pred ccceeeEEeCH-HHHhhccCCCCcCCCCChHHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHcCCCce-ee
Q 012363 320 GLPIGAALVTE-KVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS--NPAFLASVSKKGHYFKETLKQKLARNPHVK-DV 395 (465)
Q Consensus 320 G~~iG~v~~~~-~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~ 395 (465)
|+|+|++++++ ++++.+.......+ +.++++++++.++|+... .+.+.++++++.+++.+.|++ ++... ..
T Consensus 250 G~r~G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~ 324 (409)
T 2gb3_A 250 GARVGCLITRNEELISHAMKLAQGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEE----HGLKRFTK 324 (409)
T ss_dssp GGCCEEEECSCHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH----TTCCCBCC
T ss_pred cceEEEEEECcHHHHHHHHHHHhccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH----cCceeeeC
Confidence 89999999998 88887764333444 788999999998886421 122344445555555555544 33211 12
Q ss_pred eccceEEEEEec-CChHHHHHHHHHC------CceEeecC--------CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012363 396 RGLGLIIGIEFD-VSATPVVDACRDS------GLLVLTAG--------KGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 396 ~~~g~~~~i~~~-~~~~~~~~~l~~~------Gv~v~~~~--------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
+..|.++++.+. .+..++.+.|+++ ||.+.++. .++++|++++ ++++++++++++|+++++++
T Consensus 325 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~l~~~ 402 (409)
T 2gb3_A 325 PSGAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV--LEKDLLSRAIDVLMEGLKMF 402 (409)
T ss_dssp CSBSSEEEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred CCeeEEEEEEeCCCCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHHh
Confidence 334677777773 4677899999987 99998752 1378999877 79999999999999999887
Q ss_pred hh
Q 012363 461 DS 462 (465)
Q Consensus 461 ~~ 462 (465)
++
T Consensus 403 ~~ 404 (409)
T 2gb3_A 403 CS 404 (409)
T ss_dssp HC
T ss_pred hh
Confidence 64
No 85
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=100.00 E-value=2.9e-31 Score=266.35 Aligned_cols=339 Identities=17% Similarity=0.061 Sum_probs=231.8
Q ss_pred CCCEEEecccCcccc-cCCCCCHHHHHHHHHHHhhcccccCC--CCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHH
Q 012363 96 EGREYLDLSSGIAVN-ALGHGDADWIKAVVDQANVLTHVSNM--YYSIPQIELAKRLVACSF----ADRVFFSNTGTEAN 168 (465)
Q Consensus 96 dG~~ylD~~~~~~~~-~lGh~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~ 168 (465)
+|++++||..+.+.. .++ .+|.+.+++.+++......+.. +..+.+.++++++.+.++ .++|++|+||++|+
T Consensus 36 ~g~~~i~l~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al 114 (406)
T 1xi9_A 36 KGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEAL 114 (406)
T ss_dssp TTCCCEECCCCCGGGTTCC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred cCCCEEEecCCCCCcCCCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHH
Confidence 678899999887632 456 5799999999988753211111 122346666666655433 57999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCC--CceEeeCCCHHHHHhhcCCCC
Q 012363 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP--GVNFVEYGNIEATRKLIQPGK 246 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~le~~l~~~~ 246 (465)
..+++.+. .++++|++.+|+||++...+...+..... .+... +.. .|+++|++++++ +
T Consensus 115 ~~~~~~l~-----------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~----v~~~~~~~~~----~d~~~l~~~l~~-~ 174 (406)
T 1xi9_A 115 QLIFGALL-----------DPGDEILVPGPSYPPYTGLVKFYGGKPVE----YRTIEEEDWQ----PDIDDIRKKITD-R 174 (406)
T ss_dssp HHHHHHHC-----------CTTCEEEEEESCCHHHHHHHHHTTCEEEE----EEEEGGGTSE----ECHHHHHHHCCT-T
T ss_pred HHHHHHhC-----------CCCCEEEEcCCCCccHHHHHHHcCCEEEE----eecCCCcCCc----CCHHHHHHhhCc-C
Confidence 99999764 15889999999999987554333221110 01100 001 189999999975 4
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcc-cE--EEecccCC-Cccc
Q 012363 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFP-DI--MTLAKPLA-GGLP 322 (465)
Q Consensus 247 ~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~p-di--~t~sK~lg-~G~~ 322 (465)
+++|++++.++++|.+ ++++++++|.++|++||++||+||+|+++.+.+.......++... ++ .++||.++ +|+|
T Consensus 175 ~~~v~i~~p~nptG~~-~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 253 (406)
T 1xi9_A 175 TKAIAVINPNNPTGAL-YDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWR 253 (406)
T ss_dssp EEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGC
T ss_pred ceEEEEECCCCCCCCC-cCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCccE
Confidence 6666666555555654 578999999999999999999999999886633332333332111 33 36899998 5899
Q ss_pred eeeEE--eCH----HHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeee
Q 012363 323 IGAAL--VTE----KVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVR 396 (465)
Q Consensus 323 iG~v~--~~~----~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 396 (465)
+|+++ +++ ++++.+....... ++.|+++++++.++|+.. .+..+++++.....++.+.+.+.++|.+....
T Consensus 254 ~G~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 330 (406)
T 1xi9_A 254 LGYMYFVDPENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGLTGP--MDYLKEYMKKLKERRDYIYKRLNEIPGISTTK 330 (406)
T ss_dssp CEEEEEECTTCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHHSC--CHHHHHHHHHHHHHHHHHHHHHHTSTTEECCC
T ss_pred EEEEEEecCchhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHHHHhCCCCeeec
Confidence 99999 898 8888776432223 678889999999999743 22244444444444455555555554443333
Q ss_pred cc-ceEEEEEec----CChHHHHHHHH-HCCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012363 397 GL-GLIIGIEFD----VSATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 397 ~~-g~~~~i~~~----~~~~~~~~~l~-~~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
+. |.++++.++ .+..++.+.|+ ++||.+.++.. .+++||+++ ++++++++++++|+++++++.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~--~~~~~i~~~~~~l~~~l~~~~ 404 (406)
T 1xi9_A 331 PQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL--PPIEILEEAMDRFEKFMKERL 404 (406)
T ss_dssp CCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC--SCHHHHHHHHHHHHHHHHHC-
T ss_pred CCeeEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHHHh
Confidence 43 555666664 35678999987 89999987631 368999987 799999999999999998754
No 86
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=100.00 E-value=1.1e-31 Score=271.86 Aligned_cols=340 Identities=17% Similarity=0.090 Sum_probs=225.0
Q ss_pred EEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccc----------cCCCCCHHHHHHHHHHHhhcC-------
Q 012363 92 LYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV----------SNMYYSIPQIELAKRLVACSF------- 154 (465)
Q Consensus 92 ~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~----------~~~~~~~~~~~la~~l~~~~~------- 154 (465)
.||.++|.+.++..+...++++ +|.+.+++.++.....+. ..+.......+|++.|+++++
T Consensus 30 ~y~~~~~p~~~i~lg~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~ 107 (435)
T 3piu_A 30 PYHEVHNTNGIIQMGLAENQLC--FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKV 107 (435)
T ss_dssp BCBTTTBTTSBEECSSCCCCSS--HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSS
T ss_pred CCCcccCCCCeEEecccccccc--HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCC
Confidence 3778888776666666666665 678888887765432211 011111112344444444433
Q ss_pred ---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEee
Q 012363 155 ---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVE 231 (465)
Q Consensus 155 ---~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (465)
.++|++++||++|+..++++++. +++.|++.+|+|+++........+.. +..++
T Consensus 108 ~~~~~~v~~~~gg~~a~~~~~~~l~~-----------~gd~vl~~~p~~~~~~~~~~~~~g~~------------~~~~~ 164 (435)
T 3piu_A 108 TFDPNHLVLTAGATSANETFIFCLAD-----------PGEAVLIPTPYYPGFDRDLKWRTGVE------------IVPIH 164 (435)
T ss_dssp CCCGGGEEEEEHHHHHHHHHHHHHCC-----------TTCEEEEEESCCTTHHHHTTTTTCCE------------EEEEE
T ss_pred CCCHHHEEEcCChHHHHHHHHHHhcC-----------CCCeEEECCCccccHHHHHHHhcCCE------------EEEee
Confidence 78999999999999999997652 68899999999988765443222211 12222
Q ss_pred C-------CCHHHHHhhcCC-----CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc
Q 012363 232 Y-------GNIEATRKLIQP-----GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299 (465)
Q Consensus 232 ~-------~d~~~le~~l~~-----~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~ 299 (465)
+ .|+++|++++++ .++++|++++.++++|. +++.+.+++|+++|++||++||+||+|+++++.|..+
T Consensus 165 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~ 243 (435)
T 3piu_A 165 CTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGT-TMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSF 243 (435)
T ss_dssp CCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCC
T ss_pred CCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCC
Confidence 2 188999999863 25666665554455554 4578889999999999999999999999876666432
Q ss_pred c-ccccC----Cc-----cc----EEEecccCC-CccceeeEEe-CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhc
Q 012363 300 A-HEHYG----IF-----PD----IMTLAKPLA-GGLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS 363 (465)
Q Consensus 300 ~-~~~~~----~~-----pd----i~t~sK~lg-~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~ 363 (465)
. ..... +. +| +.++||++| +|+|+||+++ ++++++.+. ....++..++++++++.++|+...
T Consensus 244 ~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~ 321 (435)
T 3piu_A 244 ISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAAT--KMSSFGLVSSQTQHLLSAMLSDKK 321 (435)
T ss_dssp CCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHH--HHGGGSCCCHHHHHHHHHHHHCHH
T ss_pred cCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHH--HHhhcCCCCHHHHHHHHHHhcChH
Confidence 1 11111 11 23 568999998 6999999999 567777665 233455678889988888887322
Q ss_pred C-chHHHHHHHHHHHHHHHHHHHHHcCCCceeeecc-ceEEEEEecC--------ChHHHHHHHHHC-CceEeecC----
Q 012363 364 N-PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGL-GLIIGIEFDV--------SATPVVDACRDS-GLLVLTAG---- 428 (465)
Q Consensus 364 ~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-g~~~~i~~~~--------~~~~~~~~l~~~-Gv~v~~~~---- 428 (465)
. ++..++.++.....++.+.+.+.+.+. ...++. |.++++.++. ...++.+.|+++ ||++.++.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~ 400 (435)
T 3piu_A 322 LTKNYIAENHKRLKQRQKKLVSGLQKSGI-SCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHC 400 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTC-EECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCC
Confidence 1 122233333333444444444444443 333444 4888888842 345788888887 99998752
Q ss_pred -CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012363 429 -KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 429 -~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
..+++||+++.. +++++++++++|+++++++.
T Consensus 401 ~~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~~~ 433 (435)
T 3piu_A 401 TEPGWFRVCFANL-PERTLDLAMQRLKAFVGEYY 433 (435)
T ss_dssp SSTTEEEEECSSS-CHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEeeCC-CHHHHHHHHHHHHHHHHHHh
Confidence 147899998655 99999999999999998765
No 87
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.98 E-value=3.1e-31 Score=260.70 Aligned_cols=325 Identities=14% Similarity=0.101 Sum_probs=217.7
Q ss_pred EeeeccEEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecC
Q 012363 85 ASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSN 162 (465)
Q Consensus 85 ~~~~G~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~ 162 (465)
.+++|.++++.+|+++|||.++.. +++ .+|++++++.+++.... .|+.....+++++++++++ .++|++|+
T Consensus 2 ~~~~g~~~~~~~g~~~id~~~~~~--~~~-~~~~v~~a~~~~~~~~~----~y~~~~~~~lr~~la~~~~~~~~~i~~t~ 74 (350)
T 3fkd_A 2 IFGHGDEGITPLSSEIVNFSTTVW--TDG-DKDHLEKHLVENLNCIR----HYPEPDAGTLRQMLAKRNSVDNNAILVTN 74 (350)
T ss_dssp --------------CCEECSCCSC--CCS-CCHHHHHHHHHTGGGGG----SCCCTTCHHHHHHHHHHTTCCGGGEEEES
T ss_pred cccccchHhhhccccEEEccCCCC--CCC-CCHHHHHHHHHhHhHHh----cCCCCcHHHHHHHHHHHhCcCHHHEEEcC
Confidence 468899999999999999999865 556 78999999998874322 2333333688999999887 57999999
Q ss_pred CHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC-CCHHHHHhh
Q 012363 163 TGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-GNIEATRKL 241 (465)
Q Consensus 163 sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~ 241 (465)
||++|+..+++++. +++|++.+|+|+++...+...+. .+..+|. ++.+.+
T Consensus 75 g~~~al~~~~~~l~-------------gd~Vi~~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~~--- 125 (350)
T 3fkd_A 75 GPTAAFYQIAQAFR-------------GSRSLIAIPSFAEYEDACRMYEH-------------EVCFYPSNEDIGEA--- 125 (350)
T ss_dssp HHHHHHHHHHHHTT-------------TCEEEEEESCCHHHHHHHHHTTC-------------EEEEEETTSCGGGS---
T ss_pred CHHHHHHHHHHHHC-------------CCEEEEeCCCcHHHHHHHHHcCC-------------eEEEEecCCccccC---
Confidence 99999999998664 57899999999988754433321 2333444 222221
Q ss_pred cCCCCeEE-EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc--cccccCCcccEEEecccCC
Q 012363 242 IQPGKTAA-VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW--AHEHYGIFPDIMTLAKPLA 318 (465)
Q Consensus 242 l~~~~~a~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~--~~~~~~~~pdi~t~sK~lg 318 (465)
...++++ +++.|.|++ |.+ .+.+.+++|.++|+++ +||+||+|.+|++.+... ..+..+....+.++||.++
T Consensus 126 -~~~~~~~v~i~~p~npt-G~~-~~~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~ 200 (350)
T 3fkd_A 126 -DFSNMDFCWLCNPNNPD-GRL-LQRTEILRLLNDHPDT--TFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYG 200 (350)
T ss_dssp -CCTTCSEEEEESSCTTT-CCC-CCHHHHHHHHHHCTTS--EEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHS
T ss_pred -ccCCCCEEEEeCCCCCc-CCC-CCHHHHHHHHHhCCCC--EEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhcc
Confidence 1123444 445554444 443 4666677777777655 999999999887665422 2222333455668999999
Q ss_pred -CccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHcCCCceeee
Q 012363 319 -GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS-NPAFLASVSKKGHYFKETLKQKLARNPHVKDVR 396 (465)
Q Consensus 319 -~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 396 (465)
.|+|+||+++++++++.+... ..+++.++++++++.++|+... -.+..++..++.+++.+.| .++|.+...+
T Consensus 201 ~~G~r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L----~~~~~~~~~~ 274 (350)
T 3fkd_A 201 IPGLRIGYIVANKDFMKRVAAF--STPWAVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITAL----NRLDGVEVHP 274 (350)
T ss_dssp CGGGCCEEEECCHHHHHHHHTT--CCTTCSCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHH----HHSTTEEECC
T ss_pred CcchheEeEEeCHHHHHHHHHh--CCCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH----hcCCCcEECC
Confidence 689999999999999988743 3467889999999999998543 1122222334444544444 4455555566
Q ss_pred ccceEEEEEecC-ChHHHHHHHHH-CCceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012363 397 GLGLIIGIEFDV-SATPVVDACRD-SGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 397 ~~g~~~~i~~~~-~~~~~~~~l~~-~Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
+.|.++++.++. +..++.+.|.+ +||.+.++.. ++++||+++ +++++++++++|++++++
T Consensus 275 ~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~---~~~~~~~l~~al~~~~~~ 341 (350)
T 3fkd_A 275 SGTTFFLLRLKKGTAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ---RPAQNQLFIKALETFLEK 341 (350)
T ss_dssp CSSSEEEEEESSSCHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHHTC
T ss_pred CCCcEEEEECCCCCHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHHH
Confidence 778888888853 67889999998 9999988631 478999855 788899999999887654
No 88
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.98 E-value=3.2e-31 Score=266.56 Aligned_cols=334 Identities=16% Similarity=0.109 Sum_probs=227.5
Q ss_pred EEecccCcccccCCCCCHHHHHHHHHHHhhcccccC--CCCCHHHHHHHHHHHhhcC----CC-eEEecCCHHHHHHHHH
Q 012363 100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN--MYYSIPQIELAKRLVACSF----AD-RVFFSNTGTEANEAAI 172 (465)
Q Consensus 100 ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~----~~-~v~~~~sG~eA~~~al 172 (465)
+|||.++.. .++ .+|.+.+++.+++++....+. .+..+.++++++++.+.++ .+ +|++|+||++|+..++
T Consensus 27 ~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~ 103 (411)
T 2o0r_A 27 AVNLGQGFP--DED-GPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAV 103 (411)
T ss_dssp CEESSCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHH
T ss_pred eeeccCcCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHH
Confidence 689988865 466 689999999999876211111 1123346666666665544 45 8999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCC-ceEeeCCCHHHHHhhcCCCCeEEEE
Q 012363 173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPG-VNFVEYGNIEATRKLIQPGKTAAVF 251 (465)
Q Consensus 173 ~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~le~~l~~~~~a~vi 251 (465)
+.+. .++++|++.+|+||++...+...+.... . .+.... ..+ ..|+++|++++++ ++++|+
T Consensus 104 ~~~~-----------~~gd~Vl~~~~~y~~~~~~~~~~g~~~~-~---v~~~~~~~~~--~~d~~~l~~~l~~-~~~~v~ 165 (411)
T 2o0r_A 104 LGLV-----------EPGSEVLLIEPFYDSYSPVVAMAGAHRV-T---VPLVPDGRGF--ALDADALRRAVTP-RTRALI 165 (411)
T ss_dssp HHHC-----------CTTCEEEEEESCCTTHHHHHHHTTCEEE-E---EECEEETTEE--ECCHHHHHHHCCT-TEEEEE
T ss_pred HHhc-----------CCCCEEEEeCCCcHhHHHHHHHcCCEEE-E---eeccccccCC--CCCHHHHHHhhcc-CceEEE
Confidence 8764 1578999999999997654433222111 0 011100 000 0389999999975 566776
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-ccccc----cCCcccEEEecccCC-Cccceee
Q 012363 252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEH----YGIFPDIMTLAKPLA-GGLPIGA 325 (465)
Q Consensus 252 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~~~~----~~~~pdi~t~sK~lg-~G~~iG~ 325 (465)
+++.++++|.+ ++.+++++|+++|++||++||+||+|+++.+.|.. ..... .+..+.+.++||.++ .|+|+|+
T Consensus 166 l~~~~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~ 244 (411)
T 2o0r_A 166 INSPHNPTGAV-LSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGW 244 (411)
T ss_dssp EESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEE
T ss_pred EeCCCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEE
Confidence 66555556654 57899999999999999999999999988766532 12211 233455668999998 6899999
Q ss_pred EEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEE
Q 012363 326 ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN--PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIG 403 (465)
Q Consensus 326 v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~ 403 (465)
+++++++++.+.......+++.++++++++.++|+...+ ++..++++++.+++.+.|++. +.....+..|.+++
T Consensus 245 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~g~~~~ 320 (411)
T 2o0r_A 245 ACGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTEI----GFAVHDSYGTYFLC 320 (411)
T ss_dssp EECCHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH----TCEECCCCBSSEEE
T ss_pred EeeCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc----CCEecCCCeeEEEE
Confidence 999999988876544445677788889999999975411 233444555555555555543 32212233466888
Q ss_pred EEec----CChHHHHHHHH-HCCceEeecC----------------CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012363 404 IEFD----VSATPVVDACR-DSGLLVLTAG----------------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 404 i~~~----~~~~~~~~~l~-~~Gv~v~~~~----------------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
+.+. .+..++.+.|+ ++||.+.++. ..+++||++. .+++++++++++|++++++.+
T Consensus 321 ~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~~~~~~ 397 (411)
T 2o0r_A 321 ADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC--KRDDTLDEAIRRLSVLAERPA 397 (411)
T ss_dssp EECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECC--SCHHHHHHHHHHHGGGGC---
T ss_pred EecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHhccC
Confidence 8884 24678888887 6799998741 1257999875 489999999999998776544
No 89
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.98 E-value=1.5e-30 Score=261.28 Aligned_cols=337 Identities=14% Similarity=0.088 Sum_probs=232.6
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhccc-ccC--CCCCHHHHHHHHHHHhhcC----C-CeEEecCCHHHHHH
Q 012363 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH-VSN--MYYSIPQIELAKRLVACSF----A-DRVFFSNTGTEANE 169 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~-~~~--~~~~~~~~~la~~l~~~~~----~-~~v~~~~sG~eA~~ 169 (465)
..+|||..+.. .++ .+|.|++++.+++..... .+. .+..+.++++++++.+.++ . ++|++++||++|+.
T Consensus 23 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~ 99 (410)
T 3e2y_A 23 PSVVNLGQGFP--DIS-PPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLF 99 (410)
T ss_dssp TTSEECSSCCC--CSC-CCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred CCeEEecCCCC--CCC-CCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHH
Confidence 45788888764 344 679999999999875311 111 1123446666666665543 4 79999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCC-CCC-----ceEeeCCCHHHHHhhcC
Q 012363 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV-MPG-----VNFVEYGNIEATRKLIQ 243 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~d~~~le~~l~ 243 (465)
.+++.+. .++++|++.+|+|+++...+...+...... +..+. ..+ ..+. -|+++++++++
T Consensus 100 ~~~~~~~-----------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~-~~~~~~~~g~~~~~~~~~--~d~~~l~~~~~ 165 (410)
T 3e2y_A 100 NSIQGLV-----------DPGDEVIIMVPFYDCYEPMVRMAGAVPVFI-PLRSKPTDGMKWTSSDWT--FDPRELESKFS 165 (410)
T ss_dssp HHHHHHC-----------CTTCEEEEEESCCTTHHHHHHHTTCEEEEE-ECEECCCCSSCCBGGGEE--CCHHHHHTTCC
T ss_pred HHHHHhc-----------CCCCEEEEeCCCchhhHHHHHHcCCEEEEE-eccccccccccccccCCc--CCHHHHHhhcC
Confidence 9999764 168899999999998876544433221111 00000 000 0000 28999999997
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-cccccc----CCcccEEEecccCC
Q 012363 244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEHY----GIFPDIMTLAKPLA 318 (465)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~-~~~~~~----~~~pdi~t~sK~lg 318 (465)
+ ++++|++++.++++|.+ ++++.+++|+++|++||++||+||+|++|.+.|.. ...... +...++.++||.++
T Consensus 166 ~-~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g 243 (410)
T 3e2y_A 166 S-KTKAIILNTPHNPLGKV-YTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFS 243 (410)
T ss_dssp T-TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSS
T ss_pred C-CceEEEEeCCCCCCCcC-cCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcC
Confidence 5 56777776655556654 58888999999999999999999999998776642 122222 23355668999999
Q ss_pred -CccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHH-----hcCchHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 012363 319 -GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK-----ISNPAFLASVSKKGHYFKETLKQKLARNPHV 392 (465)
Q Consensus 319 -~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~-----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 392 (465)
+|+|+||+++++++++.+.......+++.++++++++.++|+. ...+++.+++++.....++.+.+.+.+++..
T Consensus 244 ~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 323 (410)
T 3e2y_A 244 VTGWKLGWSIGPAHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLK 323 (410)
T ss_dssp CGGGCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred CCCceEEEEEECHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 6999999999999998886555567888999999999999984 1224455666666666666666666666544
Q ss_pred eeeeccceEEEEEecC-----C--------hHHHHHHHH-HCCceEeecCC----------CCEEEEecCCCCcHHHHHH
Q 012363 393 KDVRGLGLIIGIEFDV-----S--------ATPVVDACR-DSGLLVLTAGK----------GNVVRLVPPLIISEQELDQ 448 (465)
Q Consensus 393 ~~~~~~g~~~~i~~~~-----~--------~~~~~~~l~-~~Gv~v~~~~~----------~~~lRi~~~~~~t~e~i~~ 448 (465)
...+..|.++++++.. + ..+++..|+ ++||.+.++.. .+++||++ ..+++++++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~--~~~~e~l~~ 401 (410)
T 3e2y_A 324 PIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCF--IKKDSTLDA 401 (410)
T ss_dssp EEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEEC--CCCHHHHHH
T ss_pred ecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEE--cCCHHHHHH
Confidence 3455667888887731 1 136777665 67999987531 26899975 459999999
Q ss_pred HHHHHHH
Q 012363 449 AVEILCK 455 (465)
Q Consensus 449 ~l~~l~~ 455 (465)
++++|++
T Consensus 402 ~l~~l~~ 408 (410)
T 3e2y_A 402 AEEIFRA 408 (410)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999875
No 90
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.98 E-value=6.6e-31 Score=259.80 Aligned_cols=321 Identities=17% Similarity=0.154 Sum_probs=229.7
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHH
Q 012363 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFA 175 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a 175 (465)
+.+|||.++.. +++ .+|.|++++.+++.... .|+.....+++++++++++ .++|++++||++|+..+++.+
T Consensus 30 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~----~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l 102 (365)
T 3get_A 30 KEVIKLASNEN--PFG-TPPKAIECLRQNANKAH----LYPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSK 102 (365)
T ss_dssp SCCEECSSCCC--TTC-SCHHHHHHHHHHGGGTT----SCCCTTCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH
T ss_pred CceEEecCCCC--CCC-CCHHHHHHHHHHHHhhc----cCCCCChHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHH
Confidence 67899998855 466 78999999999887532 2333333688888888887 679999999999999999876
Q ss_pred HHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCC-CCCceEeeCCCHHHHHhhcCCCCeEEEEEcc
Q 012363 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV-MPGVNFVEYGNIEATRKLIQPGKTAAVFVEP 254 (465)
Q Consensus 176 ~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep 254 (465)
. .++++|++.+|+|+++...+...+...... +. ..+. .|+++|++++++ ++++|+++.
T Consensus 103 ~-----------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v----~~~~~~~-----~d~~~l~~~l~~-~~~~v~~~~ 161 (365)
T 3get_A 103 L-----------NSKNAFLQAGVTFAMYEIYAKQCGAKCYKT----QSITHNL-----DEFKKLYETHKD-EIKLIFLCL 161 (365)
T ss_dssp C-----------CTTCEEEECSSCCTHHHHHHHHHTCEEEEC----SSSSCCH-----HHHHHHHHHTTT-TEEEEEEES
T ss_pred h-----------CCCCEEEEeCCChHHHHHHHHHcCCEEEEE----ecCCCCC-----CCHHHHHHHhCC-CCCEEEEcC
Confidence 4 168999999999998876554443322211 11 1111 278999999974 566666543
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCC--CC-cc-cc---ccccCCcccEEEecccCC-CccceeeE
Q 012363 255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR--TG-YL-WA---HEHYGIFPDIMTLAKPLA-GGLPIGAA 326 (465)
Q Consensus 255 ~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr--~g-~~-~~---~~~~~~~pdi~t~sK~lg-~G~~iG~v 326 (465)
.++.+|.+ .+.+.+++|+++| ++|+++|+||+|.++.+ .+ .. .. .+..+....+.++||.++ .|+|+|++
T Consensus 162 p~nptG~~-~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~ 239 (365)
T 3get_A 162 PNNPLGEC-LDASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYG 239 (365)
T ss_dssp SCTTTCCC-CCHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEE
T ss_pred CCCCCCCC-cCHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEE
Confidence 33444443 4777788888888 57999999999997642 22 11 11 122344455668999998 68999999
Q ss_pred EeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEe
Q 012363 327 LVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF 406 (465)
Q Consensus 327 ~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~ 406 (465)
++++++++.+... ..+++.|+++++++.++|+. .+..++.++.....++.+.+.+.+++ +...++.|.++++.+
T Consensus 240 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~~~~~~~~~~ 313 (365)
T 3get_A 240 IANANIISAFYKL--RAPFNVSNLALKAAVAAMDD---DEFTEKTLENNFSQMELYKEFAKKHN-IKIIDSYTNFITYFF 313 (365)
T ss_dssp EECHHHHHHHHHH--SCTTCSCHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHHHHHHHTT-CEECCCSSSEEEEEC
T ss_pred EcCHHHHHHHHHh--cCCCCcCHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHhCC-CEECCCCCeEEEEEC
Confidence 9999999888642 23467899999999998873 34444455544445555555554443 344567788888888
Q ss_pred cC-ChHHHHHHHHHCCceEeecCC--CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012363 407 DV-SATPVVDACRDSGLLVLTAGK--GNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 407 ~~-~~~~~~~~l~~~Gv~v~~~~~--~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
+. +..++.+.|.++||.+.++.. .+++|++++ +++++++++++|++++
T Consensus 314 ~~~~~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~---~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 314 DEKNSTDLSEKLLKKGIIIRNLKSYGLNAIRITIG---TSYENEKFFTEFDKIL 364 (365)
T ss_dssp SSSCHHHHHHHHHTTTEECEECGGGTCSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCEEEEECccCCCCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence 54 778899999999999988642 378999865 8999999999998876
No 91
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.97 E-value=3.5e-30 Score=255.58 Aligned_cols=311 Identities=17% Similarity=0.165 Sum_probs=226.8
Q ss_pred HHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEc
Q 012363 121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFT 197 (465)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~---~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~ 197 (465)
+++.+++..... .+++.....++++.+++++. .++|++++||++|+..+++.+. .++++|++.+
T Consensus 46 ~~~~~~~~~~~~--~y~~~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~-----------~~gd~Vl~~~ 112 (375)
T 3op7_A 46 EDFYKKLQGTKL--NYGWIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLI-----------EPGDHVISLY 112 (375)
T ss_dssp HHHHHHHHTSCC--SSCCTTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHC-----------CTTCEEEEEE
T ss_pred HHHHHHHhcCCc--CCCCCCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhc-----------CCCCEEEEeC
Confidence 455555544322 22233335688888888763 6899999999999999999764 2689999999
Q ss_pred CCcccCccccccccCCCCcCCCCCCCCCCceEeeCC-------CHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 012363 198 NSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-------NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQ 270 (465)
Q Consensus 198 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~ 270 (465)
|+|++....+...+.. +..+|.+ |+++|++++++ ++++|++++.++++|. +++.++++
T Consensus 113 ~~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~-~~~~~~l~ 177 (375)
T 3op7_A 113 PTYQQLYDIPKSLGAE-------------VDLWQIEEENGWLPDLEKLRQLIRP-TTKMICINNANNPTGA-VMDRTYLE 177 (375)
T ss_dssp SSCTHHHHHHHHTTCE-------------EEEEEEEGGGTTEECHHHHHHHCCT-TCCEEEEESSCTTTCC-CCCHHHHH
T ss_pred CCchhHHHHHHHcCCE-------------EEEEeccccCCCCCCHHHHHHhhcc-CCeEEEEcCCCCCCCC-CCCHHHHH
Confidence 9999876554333221 1122211 89999999975 5667777766666665 45889999
Q ss_pred HHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCC-CccceeeEEeCHHHHhhccCCCCcCCCCChH
Q 012363 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSP 349 (465)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~ 349 (465)
+|.++|++||++||+||+|+++++.+.....+.++..+++.+|||.++ +|+|+|++++++++++.+.......+++.++
T Consensus 178 ~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~~~~~~~~~~~ 257 (375)
T 3op7_A 178 ELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDYTMICAGV 257 (375)
T ss_dssp HHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEEEEEESSSSSSCGGGCCEEEECCHHHHHHHTTTGGGTTSCCCH
T ss_pred HHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEEEEeEChhhcCCcccceEEEEeCHHHHHHHHHHHhhhccCCCc
Confidence 999999999999999999999876543334455667788889999998 6899999999999999998766777888899
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeecc-ceEEEEEe--cCChHHHHHHHH-HCCceEe
Q 012363 350 LVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGL-GLIIGIEF--DVSATPVVDACR-DSGLLVL 425 (465)
Q Consensus 350 ~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-g~~~~i~~--~~~~~~~~~~l~-~~Gv~v~ 425 (465)
++++++.++|+.. +.+.++.++.....++.+.+.+.+++.+..+.+. |.+.++.+ ..+..++++.|+ ++||.+.
T Consensus 258 ~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~ 335 (375)
T 3op7_A 258 FDDLVAQLALAHY--QEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDMPMEDFCLQLLQEHGVLLV 335 (375)
T ss_dssp HHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSSCHHHHHHHHHHHHCEECE
T ss_pred HHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCCCHHHHHHHHHHhCCEEEe
Confidence 9999999888742 3445555555555566666666666655444433 44556665 345678888885 7899998
Q ss_pred ecCC---CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhhc
Q 012363 426 TAGK---GNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 426 ~~~~---~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
++.. .+++|+++ ..+.+++++++++|.++++++.++
T Consensus 336 ~g~~~~~~~~iRi~~--~~~~~~i~~~l~~l~~~l~~~~~~ 374 (375)
T 3op7_A 336 PGNRFERDGYVRLGF--ACEQETLIKGLEKLSQFLRRFDKE 374 (375)
T ss_dssp EGGGGTCTTEEEECC--CSCHHHHHHHHHHHHHHHGGGC--
T ss_pred ChhhhCCCCeEEEEe--cCCHHHHHHHHHHHHHHHHHHhhc
Confidence 8642 47888865 456689999999999999887643
No 92
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.97 E-value=1.3e-30 Score=257.11 Aligned_cols=315 Identities=15% Similarity=0.137 Sum_probs=218.9
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHH
Q 012363 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFA 175 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a 175 (465)
+++|||.+|. +++|++ |.+ + +.. ...|++....++++.++++++ .++|++++|++||+..+++.+
T Consensus 29 ~~~i~l~~~~--~~~~~~-~~v--a----~~~----~~~Y~~~~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~ 95 (356)
T 1fg7_A 29 NGDVWLNANE--YPTAVE-FQL--T----QQT----LNRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAF 95 (356)
T ss_dssp TCSEECSSCC--CSSCCC-CCC--C----CCC----TTSCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHH
T ss_pred CceEEeeCCC--CCCCCC-HhH--h----hhh----hccCCCccHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHH
Confidence 5689999985 478874 555 2 221 123444335688888888887 579999999999999999976
Q ss_pred HHHhhhcCCCCCCCC-ceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcc
Q 012363 176 RKFQRHSNPDSKEPA-TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEP 254 (465)
Q Consensus 176 ~~~t~~~~~~~~~~~-~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep 254 (465)
.. ++ ++|++.+|+||++...+...+...... +...+.. .|+++++++++ ++++|+++.
T Consensus 96 ~~-----------~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v----~~~~~~~----~d~~~l~~~i~--~~~~v~l~~ 154 (356)
T 1fg7_A 96 CE-----------PGKDAILYCPPTYGMYSVSAETIGVECRTV----PTLDNWQ----LDLQGISDKLD--GVKVVYVCS 154 (356)
T ss_dssp CC-----------TTTCEEEECSSSCTHHHHHHHHHTCEEEEC----CCCTTSC----CCHHHHHTSCT--TEEEEEEES
T ss_pred hC-----------CCCCEEEEeCCChHHHHHHHHHcCCEEEEe----eCCCCCC----CCHHHHHHHhc--CCCEEEEeC
Confidence 41 46 899999999999886655443322111 2111111 28999999986 455555544
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccc-cccCCcccEEEecccCC-CccceeeEEeCHHH
Q 012363 255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH-EHYGIFPDIMTLAKPLA-GGLPIGAALVTEKV 332 (465)
Q Consensus 255 ~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~-~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i 332 (465)
.++++|.+ .+.+++++|.++|+ +|+++|+||+|++|+........ +.++....+.++||.+| +|+|+||+++++++
T Consensus 155 p~nptG~~-~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~ 232 (356)
T 1fg7_A 155 PNNPTGQL-INPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEV 232 (356)
T ss_dssp SCTTTCCC-CCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHH
T ss_pred CCCCCCCC-CCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeCHHH
Confidence 44445544 57899999999999 99999999999988632222222 22344455668999998 69999999999999
Q ss_pred HhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCC-ceeeeccceEEEEEecCChH
Q 012363 333 ASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPH-VKDVRGLGLIIGIEFDVSAT 411 (465)
Q Consensus 333 ~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~g~~~~i~~~~~~~ 411 (465)
++.+... ..+|+.|+++++++.++|+.... +..++.++.....++.|.+.+.+++. ....++.|+++++.++ +..
T Consensus 233 ~~~l~~~--~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~-~~~ 308 (356)
T 1fg7_A 233 INLLMKV--IAPYPLSTPVADIAAQALSPQGI-VAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK-ASS 308 (356)
T ss_dssp HHHHHHH--SCSSCSCHHHHHHHHHHTSHHHH-HHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET-THH
T ss_pred HHHHHHh--cCCCCCCHHHHHHHHHHhcCccH-HHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCCCeEEEEECC-CHH
Confidence 8888632 34567899999999888864211 11444444444444455444445553 2334567888888885 677
Q ss_pred HHHHHHHHCCceEee-cCC---CCEEEEecCCCCcHHHHHHHHHHHHH
Q 012363 412 PVVDACRDSGLLVLT-AGK---GNVVRLVPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 412 ~~~~~l~~~Gv~v~~-~~~---~~~lRi~~~~~~t~e~i~~~l~~l~~ 455 (465)
++.+.|.++||.+.+ +.. ++++|++++ +++|+++++++|++
T Consensus 309 ~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~---~~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 309 AVFKSLWDQGIILRDQNKQPSLSGCLRITVG---TREESQRVIDALRA 353 (356)
T ss_dssp HHHHHHHHTTEECEECTTSTTCTTEEEEECC---CHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCEEEEECCCCCCCCCeEEEEeC---CHHHHHHHHHHHHh
Confidence 899999999999998 421 368999865 68999999998875
No 93
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.97 E-value=1.3e-30 Score=265.16 Aligned_cols=341 Identities=13% Similarity=0.058 Sum_probs=225.2
Q ss_pred CCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcc--cccCCCC-CHHHHHHHHHHHhhc----C--CCeEEecCCHH
Q 012363 95 AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT--HVSNMYY-SIPQIELAKRLVACS----F--ADRVFFSNTGT 165 (465)
Q Consensus 95 ~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~--~~~~~~~-~~~~~~la~~l~~~~----~--~~~v~~~~sG~ 165 (465)
.+|+++|||.++.. .++ .+|.|++|+.+++.+.. .....|. .....+|++.+++++ + .++|++++|++
T Consensus 66 ~~~~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~ 142 (449)
T 3qgu_A 66 NPDAKIISLGIGDT--TEP-LPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGSK 142 (449)
T ss_dssp CTTCCCEECSSCCC--CCC-CCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHH
T ss_pred CCCCCEEEeeCCCC--CCC-CCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHH
Confidence 36889999999864 343 68999999999988532 1112232 223456777777665 3 67999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC-
Q 012363 166 EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP- 244 (465)
Q Consensus 166 eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~- 244 (465)
+++..+ ..+. .+++.|++.+|+|+++...+...+....+.. ....++..+|.++.+.+...+..
T Consensus 143 ~al~~~-~~l~-----------~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 207 (449)
T 3qgu_A 143 CDIARI-QMMF-----------GSKPTVAVQDPSYPVYVDTSVMMGMTGDHNG---TGFDGIEYMVCNPDNHFFPDLSKA 207 (449)
T ss_dssp HHHHHH-HHHH-----------CSSSCEEEEESCCTHHHHHHHHHTCSCCBCS---SSBTTEEEEECCGGGTTCCCGGGC
T ss_pred HHHHHH-HHHh-----------CCCCEEEEcCCCChhHHHHHHHcCCcccccc---cccceeEEEecccccCCcCChhHc
Confidence 999987 4333 1688999999999998876655443211110 00012344554432222111111
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc-cccccc----cCCcccEEEecccCC-
Q 012363 245 GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAHEH----YGIFPDIMTLAKPLA- 318 (465)
Q Consensus 245 ~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~-~~~~~~----~~~~pdi~t~sK~lg- 318 (465)
.++++|+++..++++|. +++.+++++|+++|++||++||+||+|++|++.|. ...... .+..+++.+|||++|
T Consensus 208 ~~~~~v~l~~p~NPtG~-~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~ 286 (449)
T 3qgu_A 208 KRTDIIFFCSPNNPTGA-AATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGF 286 (449)
T ss_dssp CCCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTC
T ss_pred CCCCEEEEeCCCCCCCC-cCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCC
Confidence 23445554443444444 45889999999999999999999999999876653 112222 234456778999998
Q ss_pred CccceeeEEeCHHHHhh--------ccCCCCcCCCCChHHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHHHHHH
Q 012363 319 GGLPIGAALVTEKVASA--------INYGDHGSTFAGSPLVCNAAIAVLDKIS---NPAFLASVSKKGHYFKETLKQKLA 387 (465)
Q Consensus 319 ~G~~iG~v~~~~~i~~~--------~~~~~~~~t~~~~~~~~~aa~a~L~~~~---~~~~~~~~~~~~~~l~~~l~~~~~ 387 (465)
+|+|+||+++++++++. +.......+++.++++++++.++|+... .++..++++++.+++++.|++
T Consensus 287 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~--- 363 (449)
T 3qgu_A 287 TGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTE--- 363 (449)
T ss_dssp TTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred ccceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 69999999999887752 2222234455789999999998886421 134455555566666555554
Q ss_pred cCCCceeeeccceEEEEEec-CChHHHHHHHHHC-CceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012363 388 RNPHVKDVRGLGLIIGIEFD-VSATPVVDACRDS-GLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 388 ~~~~~~~~~~~g~~~~i~~~-~~~~~~~~~l~~~-Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
.+.....+..|.++++.++ .+..++++.|+++ ||++.|+.. .+++||+ +..+++++++++++|++++++-
T Consensus 364 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis--~~~~~e~i~~~l~~l~~~~~~~ 440 (449)
T 3qgu_A 364 -MGFSVYGGDDAPYIWVGFPGKPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRAS--AFGSRENILEAVRRFKEAYGKR 440 (449)
T ss_dssp -TTCCEEESSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHHHHHC--
T ss_pred -CCCeeeCCCCeeEEEEECCCCCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEE--ecCCHHHHHHHHHHHHHHHHhc
Confidence 3322222334788888874 4567899888876 999987531 3789997 4569999999999999988653
No 94
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.97 E-value=7.1e-30 Score=254.49 Aligned_cols=332 Identities=17% Similarity=0.118 Sum_probs=224.9
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC--CCCCHHHHHHHHHHHhhcC----CCeEEecCCHHHHHHH
Q 012363 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN--MYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANEA 170 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~~ 170 (465)
|+.++||..+.+ .++ .+|.+.+++.+++......+. .+..+.++++++++.+.++ +++|++|+||++|+..
T Consensus 30 ~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~ 106 (385)
T 1b5p_A 30 GVDLVALTAGEP--DFD-TPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFN 106 (385)
T ss_dssp TCCCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHH
T ss_pred CCCEEEecCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHH
Confidence 456788888755 344 468899999988865322111 1223446677777765544 5789999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCC--CceEeeCCCHHHHHhhcCCCCeE
Q 012363 171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP--GVNFVEYGNIEATRKLIQPGKTA 248 (465)
Q Consensus 171 al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~le~~l~~~~~a 248 (465)
+++.+. .++++|++.+|+|+++...+...+..... .+..+ +.. .|+++|+++++++..+
T Consensus 107 ~~~~l~-----------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~----v~~~~~~~~~----~d~~~l~~~l~~~~~~ 167 (385)
T 1b5p_A 107 LFQAIL-----------DPGDEVIVLSPYWVSYPEMVRFAGGVVVE----VETLPEEGFV----PDPERVRRAITPRTKA 167 (385)
T ss_dssp HHHHHC-----------CTTCEEEEEESCCTHHHHHHHHTTCEEEE----EECCGGGTTC----CCHHHHHTTCCTTEEE
T ss_pred HHHHhc-----------CCCCEEEEcCCCchhHHHHHHHcCCEEEE----eecCcccCCC----CCHHHHHHhcCCCCEE
Confidence 998764 16889999999998876544333221111 11111 111 2789999999754334
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccccccc--CCcccEEEecccCC-Cccceee
Q 012363 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHY--GIFPDIMTLAKPLA-GGLPIGA 325 (465)
Q Consensus 249 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~--~~~pdi~t~sK~lg-~G~~iG~ 325 (465)
+++++|+|++|. +++.+.+++|.++|++||++||+||+|..+...|.......+ +....+.+|||.++ .|+|+||
T Consensus 168 v~~~~p~NPtG~--~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~ 245 (385)
T 1b5p_A 168 LVVNSPNNPTGA--VYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGY 245 (385)
T ss_dssp EEEESSCTTTCC--CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEE
T ss_pred EEEeCCCCCCCC--CcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcccceEE
Confidence 555677666653 458899999999999999999999999987554421122222 22233458999998 5999999
Q ss_pred EEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHH---hcC--chHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccce
Q 012363 326 ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK---ISN--PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGL 400 (465)
Q Consensus 326 v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~---~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~ 400 (465)
+++++++++.+.......+++.+++++.++.++|+. ..+ ++..++++++.+++.+.|+++ ... ...+..|.
T Consensus 246 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~--~~~~~~~~ 321 (385)
T 1b5p_A 246 ACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL--GLK--AVRPSGAF 321 (385)
T ss_dssp EECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCC--BCCCSBTT
T ss_pred EEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC--CCe--ecCCCeeE
Confidence 999999988876544445677889999999888863 211 234455555566666666553 222 11223355
Q ss_pred EEEEEec---CChHHHHHHHHHCCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012363 401 IIGIEFD---VSATPVVDACRDSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 401 ~~~i~~~---~~~~~~~~~l~~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
++++.+. .+..++.+.|.++||.+.++. ..+++||++. .+++++++++++|.++++
T Consensus 322 ~~~~~~~~~~~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~~--~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 322 YVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYA--TSEENLRKALERFARVLG 383 (385)
T ss_dssp EEEEECTTTCSSHHHHHHHHHHTTEECEESGGGTCTTEEEEECC--SCHHHHHHHHHHGGGGC-
T ss_pred EEEEecCCCCCCHHHHHHHHHHCCeEEecccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 6676763 357789999999999998863 1368999865 789999999999987664
No 95
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.97 E-value=4e-30 Score=258.85 Aligned_cols=342 Identities=13% Similarity=0.061 Sum_probs=227.9
Q ss_pred CEEEecccCcccc-cCCCCCHHHHHHHHHHHhhccc-ccC--CCCCHHHHHHHHHHHhh----------cCCCeEEecCC
Q 012363 98 REYLDLSSGIAVN-ALGHGDADWIKAVVDQANVLTH-VSN--MYYSIPQIELAKRLVAC----------SFADRVFFSNT 163 (465)
Q Consensus 98 ~~ylD~~~~~~~~-~lGh~~p~v~~a~~~~~~~~~~-~~~--~~~~~~~~~la~~l~~~----------~~~~~v~~~~s 163 (465)
+.+|||..+.+.. .-.+.+|.+++++.+++..... .+. ....+.++++++++.+. ...++|++++|
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g 112 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSG 112 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESH
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCC
Confidence 4678998887542 1234889999999998875321 111 11223355566666521 12679999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC-CCHHHHHhhc
Q 012363 164 GTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-GNIEATRKLI 242 (465)
Q Consensus 164 G~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l 242 (465)
|++|+..+++.+. .++++|++.+|+||++...+...+..... .+..++. .+ .|+++|++++
T Consensus 113 ~~~al~~~~~~l~-----------~~gd~vl~~~p~y~~~~~~~~~~g~~~~~----v~~~~~~---~~~~d~~~l~~~l 174 (416)
T 1bw0_A 113 GSHGILMAITAIC-----------DAGDYALVPQPGFPHYETVCKAYGIGMHF----YNCRPEN---DWEADLDEIRRLK 174 (416)
T ss_dssp HHHHHHHHHHHHC-----------CTTCEEEEEESCCTHHHHHHHHTTCEEEE----EEEEGGG---TTEECHHHHHHHC
T ss_pred hHHHHHHHHHHhC-----------CCCCEEEEcCCCcHhHHHHHHHcCcEEEE----eecCccc---CCCCCHHHHHHHh
Confidence 9999999999764 15789999999999987544333221110 0100000 01 2899999999
Q ss_pred CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc----c-ccccccCC---cccEEEec
Q 012363 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY----L-WAHEHYGI---FPDIMTLA 314 (465)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~----~-~~~~~~~~---~pdi~t~s 314 (465)
+++..++++++|.|++ |. .++++++++|.++|++||++||+||+|+++.+.|. . .....++. ...+.++|
T Consensus 175 ~~~~~~v~i~~p~npt-G~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~s 252 (416)
T 1bw0_A 175 DDKTKLLIVTNPSNPC-GS-NFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTA 252 (416)
T ss_dssp CTTEEEEEEESSCTTT-CC-CCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEEST
T ss_pred ccCCeEEEEeCCCCCC-Cc-ccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecch
Confidence 7644556677775544 44 46889999999999999999999999999865554 1 12222221 22344789
Q ss_pred ccCC-CccceeeEEeCHH--HHhhccCC---CCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHc
Q 012363 315 KPLA-GGLPIGAALVTEK--VASAINYG---DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLAR 388 (465)
Q Consensus 315 K~lg-~G~~iG~v~~~~~--i~~~~~~~---~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 388 (465)
|.++ +|+|+||++++++ +++.+... ....+++.|+++++++.++|+... ++.+++..+.....++.+.+.+.+
T Consensus 253 K~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~ 331 (416)
T 1bw0_A 253 KNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTP-QEHLDQIVAKIEESAMYLYNHIGE 331 (416)
T ss_dssp TTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9987 5899999998763 43333210 112467789999999999998532 334444445555555555555555
Q ss_pred CCCceeee-ccceEEEEEec-------CChHHHHHHHH-HCCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012363 389 NPHVKDVR-GLGLIIGIEFD-------VSATPVVDACR-DSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 389 ~~~~~~~~-~~g~~~~i~~~-------~~~~~~~~~l~-~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
+|.+..+. ..|.++++.++ .+..++.+.|+ ++||.+.++. .++++|+++. .+++++++++++|.++
T Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~~--~~~e~l~~~l~~l~~~ 409 (416)
T 1bw0_A 332 CIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTT--RPVEVYREAVERIKAF 409 (416)
T ss_dssp STTEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred CCCCcccCCCeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEec--CCHHHHHHHHHHHHHH
Confidence 55444333 34777887774 35677888885 8899998863 2478999874 6899999999999999
Q ss_pred HHHhhh
Q 012363 457 LPVLDS 462 (465)
Q Consensus 457 l~~~~~ 462 (465)
+++.++
T Consensus 410 l~~~~~ 415 (416)
T 1bw0_A 410 CQRHAA 415 (416)
T ss_dssp HHHHBC
T ss_pred HHHhhc
Confidence 987654
No 96
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.97 E-value=1.8e-29 Score=252.81 Aligned_cols=328 Identities=17% Similarity=0.145 Sum_probs=232.8
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccccc----C-CCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHH
Q 012363 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS----N-MYYSIPQIELAKRLVACSFADRVFFSNTGTEANEA 170 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~----~-~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~ 170 (465)
||++|+||.++.. ..+| .+|+|.+++.+++++..... . ....+...+++++|+++++.+..+++++|++++..
T Consensus 44 ~g~~~i~~~~~~~-~~~~-~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sG~~a~~~ 121 (401)
T 2bwn_A 44 GKQDITVWCGNDY-LGMG-QHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDA 121 (401)
T ss_dssp CEEEEEECSCSCT-TSGG-GCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHH
T ss_pred CCCcEEEeeCCCc-ccCC-CCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEECCcHHHHHH
Confidence 7899999998643 1244 47899999999988643211 1 12345688999999999984444444677779888
Q ss_pred HHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC--C-CCe
Q 012363 171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ--P-GKT 247 (465)
Q Consensus 171 al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~--~-~~~ 247 (465)
++.++.... +++.|++.+++|++........ ...+..+|.+|+++|+++++ . .++
T Consensus 122 ~~~~l~~~~---------~gd~Vl~~~~~~~~~~~~~~~~-------------g~~~~~v~~~d~~~le~~l~~~~~~~~ 179 (401)
T 2bwn_A 122 TLSTLRVLF---------PGLIIYSDSLNHASMIEGIKRN-------------AGPKRIFRHNDVAHLRELIAADDPAAP 179 (401)
T ss_dssp HHHHHHHHS---------TTCEEEEETTCCHHHHHHHHHS-------------CCCEEEECTTCHHHHHHHHHHSCTTSC
T ss_pred HHHHHhcCC---------CCCEEEECchhhHHHHHHHHHc-------------CCeEEEEcCCCHHHHHHHHHhhccCCc
Confidence 888653221 4788999988887665433211 13345667778999999886 1 367
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-C-CCCCCccccccccCC----cccEEEecccCCC-c
Q 012363 248 AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-G-LGRTGYLWAHEHYGI----FPDIMTLAKPLAG-G 320 (465)
Q Consensus 248 a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g-~gr~g~~~~~~~~~~----~pdi~t~sK~lg~-G 320 (465)
++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ | +|+.|.++. ..+++ .+.+.++||++++ |
T Consensus 180 ~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~-~~~~~~~~~~i~~~s~sK~~~~~G 254 (401)
T 2bwn_A 180 KLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVA-ERDGLMHRIDIFNGTLAKAYGVFG 254 (401)
T ss_dssp EEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHH-HHHTCGGGCSEEEEESSSTTCSCC
T ss_pred eEEEEecCcCCCCCcCC----HHHHHHHHHHcCCEEEEeccccccccCCCCceee-eccCccccCcEEEeechhhccCCC
Confidence 88888888888887765 8999999999999999999998 3 555565433 33443 2334489999984 4
Q ss_pred cceeeEEeCHHHHhhccCCC--CcCCCCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCceee
Q 012363 321 LPIGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKDV 395 (465)
Q Consensus 321 ~~iG~v~~~~~i~~~~~~~~--~~~t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 395 (465)
||+++++++++.+.... ...+.+.++++++++.++++.+.+ ++..++++++.+++.+.|+++ .+...
T Consensus 255 ---G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~--- 326 (401)
T 2bwn_A 255 ---GYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL--GMPII--- 326 (401)
T ss_dssp ---EEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH--TCCBC---
T ss_pred ---CEEecCHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC--CCccc---
Confidence 89999998887765311 111223466888999999998765 367778888888888888775 33322
Q ss_pred eccceEEEEEecC--ChHHHHHHHH-HCCceEeecCC-----C-CEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012363 396 RGLGLIIGIEFDV--SATPVVDACR-DSGLLVLTAGK-----G-NVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 396 ~~~g~~~~i~~~~--~~~~~~~~l~-~~Gv~v~~~~~-----~-~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
.+.+.++++.++. +..++.+.|+ ++||.+.++.. + +++|++++..++++++++++++|+++++++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~~ 400 (401)
T 2bwn_A 327 DHGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWARC 400 (401)
T ss_dssp CCSSSCEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC---
T ss_pred CCCCCeEEEEeCChHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Confidence 2345688888742 4567888896 78999987531 1 589999998899999999999999887653
No 97
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.97 E-value=1.3e-31 Score=271.01 Aligned_cols=333 Identities=11% Similarity=0.056 Sum_probs=225.9
Q ss_pred CEEEecccCcccccCCCCCHHH--HHHHHHHHhhcccccCCCCCH-HHHHHHHHHHhhc-----C--CCe---EEecCCH
Q 012363 98 REYLDLSSGIAVNALGHGDADW--IKAVVDQANVLTHVSNMYYSI-PQIELAKRLVACS-----F--ADR---VFFSNTG 164 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v--~~a~~~~~~~~~~~~~~~~~~-~~~~la~~l~~~~-----~--~~~---v~~~~sG 164 (465)
+.++||..+.+. .+|+ +|.+ ++++.+++... ....|+.. ...++++.+++++ + .++ |++|+||
T Consensus 47 ~~~i~l~~g~~~-~~~~-~~~~~~~~a~~~~~~~~--~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~ 122 (430)
T 2x5f_A 47 STTYNATIGMAT-NKDG-KMFASSLDAMFNDLTPD--EIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNAL 122 (430)
T ss_dssp TCSEECCCSSCE-ETTE-ECCCHHHHTTBSSCCGG--GTSSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHH
T ss_pred CCcEEeeeeecc-CCCC-chhhHHHHHHHHhcCcc--cccccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCc
Confidence 568999998764 5775 5666 77777665431 11122221 2345555555554 4 577 9999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccc-ccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC
Q 012363 165 TEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA-LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ 243 (465)
Q Consensus 165 ~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~ 243 (465)
++|+..+++.+. .++++|++.+|+||++...+.. .+.... . .+..... + ..|+++|+++++
T Consensus 123 ~~al~~~~~~l~-----------~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~-~---~~~~~~~-~--~~d~~~l~~~l~ 184 (430)
T 2x5f_A 123 THGLSLVGDLFV-----------NQDDTILLPEHNWGNYKLVFNTRNGANLQ-T---YPIFDKD-G--HYTTDSLVEALQ 184 (430)
T ss_dssp HHHHHHHHHHHC-----------CTTCEEEEESSCCTHHHHHHTTTTCCEEE-E---ECCBCTT-S--CBCSHHHHHHHH
T ss_pred hHHHHHHHHHHh-----------CCCCEEEEcCCcCccHHHHHHHhcCCeEE-E---EeccCcc-C--CcCHHHHHHHHH
Confidence 999999999764 1588999999999998765544 332211 1 1111100 0 127899999886
Q ss_pred C--CCeE-EEEEcccCCCCCcccCCHHHHHHHHHHHHH-----hCCEEEEeccccCCCCCCcc-ccc--cccCCccc---
Q 012363 244 P--GKTA-AVFVEPIQGEGGIYSATKEFLQFLRDACDD-----AGALLVFDEVQCGLGRTGYL-WAH--EHYGIFPD--- 309 (465)
Q Consensus 244 ~--~~~a-~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~-----~g~llI~DEv~~g~gr~g~~-~~~--~~~~~~pd--- 309 (465)
+ .+++ +++++|.|+ +|. .++.+++++|.++|++ ||+++|+||+|++|.+.|.. ... ...+..++
T Consensus 185 ~~~~~~~~v~i~~p~np-tG~-~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (430)
T 2x5f_A 185 SYNKDKVIMILNYPNNP-TGY-TPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAIL 262 (430)
T ss_dssp HCCSSEEEEEECSSCTT-TCC-CCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEE
T ss_pred hcCCCCEEEEEcCCCCC-CCC-cCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcce
Confidence 3 2444 456667444 454 4688999999999999 99999999999998766542 111 22122233
Q ss_pred ---EEEecccCC-CccceeeEEe---CHHHHhhccCCCCc----CCCCChHHHHHHHHHHHH-HhcCchHHHH---HHHH
Q 012363 310 ---IMTLAKPLA-GGLPIGAALV---TEKVASAINYGDHG----STFAGSPLVCNAAIAVLD-KISNPAFLAS---VSKK 374 (465)
Q Consensus 310 ---i~t~sK~lg-~G~~iG~v~~---~~~i~~~~~~~~~~----~t~~~~~~~~~aa~a~L~-~~~~~~~~~~---~~~~ 374 (465)
+.++||.++ +|+|+||+++ ++++++.+...... .+++.|+++++++.++|+ .. ++.++ .++.
T Consensus 263 ~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~ 339 (430)
T 2x5f_A 263 PIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNK---QFDKEIEQNIQT 339 (430)
T ss_dssp EEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCH---HHHHHHHHHHHH
T ss_pred EEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccCh---HHHHHHHHHHHH
Confidence 557899998 6999999999 99998887643333 677899999999999997 42 22222 3334
Q ss_pred HHHHHHHHHHHHH----cCCCceeeecc-ceEEEEEec-CChHHHHHHHHH-CCceEeecCCCCEEEEecCCCCcHHHHH
Q 012363 375 GHYFKETLKQKLA----RNPHVKDVRGL-GLIIGIEFD-VSATPVVDACRD-SGLLVLTAGKGNVVRLVPPLIISEQELD 447 (465)
Q Consensus 375 ~~~l~~~l~~~~~----~~~~~~~~~~~-g~~~~i~~~-~~~~~~~~~l~~-~Gv~v~~~~~~~~lRi~~~~~~t~e~i~ 447 (465)
....++.+.+.+. ..+ +....+. |.++++.++ .+..++.+.|++ +||.+.+++. +++|++++. .++++++
T Consensus 340 ~~~~~~~l~~~L~~~~~~~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~-~~iRis~~~-~~~e~i~ 416 (430)
T 2x5f_A 340 LKERYEVTKEVVYADQYHSH-WQAYDFNSGYFMAIKVHDVDPEALRKHLIDKYSIGVIALNA-TDIRIAFSC-VEKDDIP 416 (430)
T ss_dssp HHHHHHHHHHHHTCGGGTTT-EEECCCCBSSEEEEEESSSCHHHHHHHHHHHHCEECEECSS-SEEEEEGGG-SCGGGHH
T ss_pred HHHHHHHHHHHHHhhCCCCC-ceeeCCCceEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCC-CeEEEEEec-CCHHHHH
Confidence 4444444444444 333 3333333 566888874 467789999998 9999998744 789999885 4899999
Q ss_pred HHHHHHHHHHHHh
Q 012363 448 QAVEILCKTLPVL 460 (465)
Q Consensus 448 ~~l~~l~~~l~~~ 460 (465)
+++++|+++++++
T Consensus 417 ~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 417 HVFDSIAKAIDDL 429 (430)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998765
No 98
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.97 E-value=7.1e-31 Score=262.40 Aligned_cols=327 Identities=13% Similarity=0.070 Sum_probs=207.8
Q ss_pred EEeCCCCEEEecccCcccccCC--CCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhc---C-----CCeEEe-
Q 012363 92 LYDAEGREYLDLSSGIAVNALG--HGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS---F-----ADRVFF- 160 (465)
Q Consensus 92 ~~d~dG~~ylD~~~~~~~~~lG--h~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~---~-----~~~v~~- 160 (465)
+.+..|+++|||.+|.+..+.| +.+|.+++++.+++++... ..+.+.....++++.+++++ + .++|++
T Consensus 20 ~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~ 98 (396)
T 2q7w_A 20 FRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETT-KNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTA 98 (396)
T ss_dssp --------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCC-CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred HhccCCCCceecccccccCCCCCccCcHHHHHHHHhhcCcccc-cCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEE
Confidence 3333567899999998655556 5679999999988765311 11112222344555555443 1 678998
Q ss_pred -cCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC---C---
Q 012363 161 -SNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY---G--- 233 (465)
Q Consensus 161 -~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--- 233 (465)
|+||++|++.+++++..+. ++++|++.+|+||++...+...+... ..+|. +
T Consensus 99 ~~~g~~~a~~~~~~~~~~~~---------~gd~Vl~~~p~y~~~~~~~~~~g~~~-------------~~~~~~~~~~~~ 156 (396)
T 2q7w_A 99 QTPGGTGALRVAADFLAKNT---------SVKRVWVSNPSWPNHKSVFNSAGLEV-------------REYAYYDAENHT 156 (396)
T ss_dssp EESHHHHHHHHHHHHHHHHS---------CCCEEEEEESCCTHHHHHHHHTTCEE-------------EEEECEETTTTE
T ss_pred ecccchhhHHHHHHHHHHhC---------CCCEEEEcCCCchhHHHHHHHcCCce-------------EEEecccCCCCC
Confidence 9999999999998776443 58899999999999876554433221 12222 1
Q ss_pred -CHHHHHhhcCCC--CeEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCC--ccccccccC--
Q 012363 234 -NIEATRKLIQPG--KTAAVF-VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG--YLWAHEHYG-- 305 (465)
Q Consensus 234 -d~~~le~~l~~~--~~a~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g--~~~~~~~~~-- 305 (465)
|+++|+++++.. ++++++ ++|.|++ |. .++.+++++|.++|++||++||+||+|++|++.| .......+.
T Consensus 157 ~d~~~l~~~l~~~~~~~~~v~~~~p~npt-G~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 234 (396)
T 2q7w_A 157 LDFDALINSLNEAQAGDVVLFHGCCHNPT-GI-DPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAM 234 (396)
T ss_dssp ECHHHHHHHHTTCCTTCEEEEECSSCTTT-CC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHH
T ss_pred cCHHHHHHHHHhCCCCCEEEEeCCCCCCC-CC-CCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhc
Confidence 799999998742 244444 4455554 43 5688999999999999999999999999986653 222222221
Q ss_pred --CcccEEEecccCC-CccceeeEEe---CH----HHHhhccCCCCcCCC-CChHHHHHHHHHHHHHhc--------Cch
Q 012363 306 --IFPDIMTLAKPLA-GGLPIGAALV---TE----KVASAINYGDHGSTF-AGSPLVCNAAIAVLDKIS--------NPA 366 (465)
Q Consensus 306 --~~pdi~t~sK~lg-~G~~iG~v~~---~~----~i~~~~~~~~~~~t~-~~~~~~~~aa~a~L~~~~--------~~~ 366 (465)
...-+.++||.++ +|+|+||+++ ++ ++++.+... ...++ +.|+++++++.++|+... -++
T Consensus 235 ~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~ 313 (396)
T 2q7w_A 235 HKELIVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAA-IRANYSNPPAHGASVVATILSNDALRAIWEQELTD 313 (396)
T ss_dssp CSCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHH-HHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeccccccccccccceEEEEcCCHHHHHHHHHHHHHH-HhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHH
Confidence 1122458999999 6999999987 55 355444321 12334 348999999888886420 012
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC---Ccee-eeccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCc
Q 012363 367 FLASVSKKGHYFKETLKQKLARNP---HVKD-VRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIIS 442 (465)
Q Consensus 367 ~~~~~~~~~~~l~~~l~~~~~~~~---~~~~-~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t 442 (465)
..++++++.+++.+.|++ .+ .+.. .+..|.++++.+ +...+...|.++||++.++ +|++++.. +
T Consensus 314 ~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gv~v~~~-----~Ris~~~~-~ 381 (396)
T 2q7w_A 314 MRQRIQRMRQLFVNTLQE----KGANRDFSFIIKQNGMFSFSGL--TKEQVLRLREEFGVYAVAS-----GRVNVAGM-T 381 (396)
T ss_dssp C-CHHHHHHHHHHHHHHH----TTCCSCCTHHHHCCSSEEECCC--CHHHHHHHHHHHCEECCTT-----CEEEGGGC-C
T ss_pred HHHHHHHHHHHHHHHHHh----cCCCCCcceecCCCceEEEecC--CHHHHHHHHHhcCeeecCC-----ceEEEeec-C
Confidence 233444444444444443 33 1222 223456656554 3445566667899999863 69998754 8
Q ss_pred HHHHHHHHHHHHHH
Q 012363 443 EQELDQAVEILCKT 456 (465)
Q Consensus 443 ~e~i~~~l~~l~~~ 456 (465)
++++++++++|+++
T Consensus 382 ~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 382 PDNMAPLCEAIVAV 395 (396)
T ss_dssp TTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999875
No 99
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.97 E-value=1.2e-30 Score=263.23 Aligned_cols=344 Identities=11% Similarity=0.028 Sum_probs=235.4
Q ss_pred EEecccCcccccCCCCCHHHHHHHH--HHHhhcccccCCC--CCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHH--HH
Q 012363 100 YLDLSSGIAVNALGHGDADWIKAVV--DQANVLTHVSNMY--YSIPQIELAKRLVACSF--ADRVFFSNTGTEANE--AA 171 (465)
Q Consensus 100 ylD~~~~~~~~~lGh~~p~v~~a~~--~~~~~~~~~~~~~--~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~--~a 171 (465)
.|||..+.+...+...+|.+++++. +.+... .....| +.....+|++.++++++ .++|++|+|+++|+. .+
T Consensus 27 ~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~-~~~~~Yp~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~ 105 (423)
T 3ez1_A 27 NLNMQRGQPADADFDLSNGLLTVLGAEDVRMDG-LDLRNYPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVL 105 (423)
T ss_dssp CEESCCCCCCHHHHHTTGGGGGSCCGGGCEETT-EETTSSCSCTTCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHH
T ss_pred eEecCCCCCChHhCCCcHHHHHHHhhhHHhhcc-hhhhCCCCCCCChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHH
Confidence 4788877665333445667888875 443321 111223 22335688888988887 679999999999997 78
Q ss_pred HHHHHHHhhhcCCCCCCC--------CceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC
Q 012363 172 IKFARKFQRHSNPDSKEP--------ATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ 243 (465)
Q Consensus 172 l~~a~~~t~~~~~~~~~~--------~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~ 243 (465)
++.+.... ++ +++|++.+|+|+++...+...+...... +...+ . .|+++|+++++
T Consensus 106 ~~~l~~~~--------~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v----~~~~~-g----~d~~~l~~~l~ 168 (423)
T 3ez1_A 106 TFALLHGV--------RGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTV----DMQSD-G----PDVDAVERLAG 168 (423)
T ss_dssp HHHHHTCC--------TTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEE----EEETT-E----ECHHHHHHHHH
T ss_pred HHHHhccC--------CCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEec----cCCCC-C----CCHHHHHHHHh
Confidence 87665210 01 5899999999999876554443221111 11111 1 28999999995
Q ss_pred -CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH-HHhCCEEEEeccccCCCCCC-c------cccc----cccCCcccE
Q 012363 244 -PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC-DDAGALLVFDEVQCGLGRTG-Y------LWAH----EHYGIFPDI 310 (465)
Q Consensus 244 -~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~-~~~g~llI~DEv~~g~gr~g-~------~~~~----~~~~~~pdi 310 (465)
..++++|+++|..+|++...++.+.+++|.++| ++||++||+||+|..+...+ . .+.. +..+....+
T Consensus 169 ~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 248 (423)
T 3ez1_A 169 TDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVF 248 (423)
T ss_dssp SCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEE
T ss_pred hCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEE
Confidence 346888888875444433556888899999999 99999999999998532222 1 1111 123445567
Q ss_pred EEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHH-hc-Cch----HHHHHHHHHHHHHHHHHH
Q 012363 311 MTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK-IS-NPA----FLASVSKKGHYFKETLKQ 384 (465)
Q Consensus 311 ~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~-~~-~~~----~~~~~~~~~~~l~~~l~~ 384 (465)
.+|||.+.+|+|+||+++++++++.+.......+++.+++++.++.++|+. .. -.. ..+.++++.+.+.+.|.+
T Consensus 249 ~S~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 328 (423)
T 3ez1_A 249 ASTSKITFAGAGLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRA 328 (423)
T ss_dssp EESTTTSCSSSSCEEEEECHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCchhhccCCcceEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999667999999999999998887655567788999999999998885 11 112 223334445555555555
Q ss_pred HHHcCC-Cce-eeeccceEEEEEec-CChHHHHHHHHHCCceEeecC---------CCCEEEEecCCCCcHHHHHHHHHH
Q 012363 385 KLARNP-HVK-DVRGLGLIIGIEFD-VSATPVVDACRDSGLLVLTAG---------KGNVVRLVPPLIISEQELDQAVEI 452 (465)
Q Consensus 385 ~~~~~~-~~~-~~~~~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~---------~~~~lRi~~~~~~t~e~i~~~l~~ 452 (465)
.+...+ .+. ..+..|+++++.++ .+...+.+.|.++||.+.+++ ..+++||+++.. +++++++++++
T Consensus 329 ~l~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~ 407 (423)
T 3ez1_A 329 ELGEGGEYATWTLPKGGYFISLDTAEPVADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRP-PVEEVRTAMQV 407 (423)
T ss_dssp HHTTTTSSEEECCCSBSSCEEEEESSSCHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSS-CHHHHHHHHHH
T ss_pred hcCcCCCceEEeCCCccEEEEEECCCCcHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCC-CHHHHHHHHHH
Confidence 444444 222 23456888899884 356778888999999998832 137899998755 99999999999
Q ss_pred HHHHHHHhhh
Q 012363 453 LCKTLPVLDS 462 (465)
Q Consensus 453 l~~~l~~~~~ 462 (465)
|.++++++..
T Consensus 408 l~~~l~~~~~ 417 (423)
T 3ez1_A 408 VAACIRLATE 417 (423)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 100
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.97 E-value=8.9e-30 Score=257.35 Aligned_cols=331 Identities=15% Similarity=0.090 Sum_probs=216.1
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHH------------hhcccccCC-CCCHHHHHHHHHHHhhcC------CCeEE
Q 012363 99 EYLDLSSGIAVNALGHGDADWIKAVVDQA------------NVLTHVSNM-YYSIPQIELAKRLVACSF------ADRVF 159 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~------------~~~~~~~~~-~~~~~~~~la~~l~~~~~------~~~v~ 159 (465)
.++||.++. +++| +|.+.+++.++. .....+... +..+.++++++++.+.++ .++|+
T Consensus 37 ~~i~l~~~~--~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~ 112 (428)
T 1iay_A 37 GVIQMGLAE--NQLC--LDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVV 112 (428)
T ss_dssp SBEECSSCC--CCSS--HHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCE
T ss_pred ceeeecccc--chhh--HHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEE
Confidence 478888764 3565 468888887532 111111111 122335555555554322 67899
Q ss_pred ecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHH
Q 012363 160 FSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATR 239 (465)
Q Consensus 160 ~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 239 (465)
+++|+++|+..++++++. ++++|++.+|+||++........+..... .+......+ ..|+++|+
T Consensus 113 ~~~G~~~ai~~~~~~~~~-----------~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~---v~~~~~~~~--~~d~~~l~ 176 (428)
T 1iay_A 113 MAGGATGANETIIFCLAD-----------PGDAFLVPSPYYPAFNRDLRWRTGVQLIP---IHCESSNNF--KITSKAVK 176 (428)
T ss_dssp EEEHHHHHHHHHHHHHCC-----------TTCEEEEESSCCTTHHHHTTTTTCCEEEE---ECCCTTTTT--CCCHHHHH
T ss_pred EccChHHHHHHHHHHhCC-----------CCCeEEEccCCCcchHHHHHHhcCCEEEE---eecCCccCC--cCCHHHHH
Confidence 999999999999997651 57899999999998765333222221111 111110000 02789999
Q ss_pred hhcCC-----CCeEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc-ccccc-------C
Q 012363 240 KLIQP-----GKTAAVF-VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHY-------G 305 (465)
Q Consensus 240 ~~l~~-----~~~a~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~-~~~~~-------~ 305 (465)
++++. .++++|+ ++|.| ++|. .++.+++++|.++|++||++||+||+|+++++.+..+ ..... +
T Consensus 177 ~~l~~~~~~~~~~~~v~l~~p~n-ptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (428)
T 1iay_A 177 EAYENAQKSNIKVKGLILTNPSN-PLGT-TLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTY 254 (428)
T ss_dssp HHHHHHHHTTCCEEEEEEESSCT-TTCC-CCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTT
T ss_pred HHHHHHHhcCCceEEEEEcCCCC-CCCC-cCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhcccccccc
Confidence 88852 2466555 45544 4454 4588999999999999999999999999875554321 11111 1
Q ss_pred Cccc----EEEecccCC-CccceeeEEe-CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhc-C----chHHHHHHHH
Q 012363 306 IFPD----IMTLAKPLA-GGLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS-N----PAFLASVSKK 374 (465)
Q Consensus 306 ~~pd----i~t~sK~lg-~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~-~----~~~~~~~~~~ 374 (465)
+.+| +.++||++| +|+|+|++++ ++++++.+.. ...+++.++++++++.++|+... . ++..++++++
T Consensus 255 ~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 332 (428)
T 1iay_A 255 CNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARK--MSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKR 332 (428)
T ss_dssp SCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHH--HHTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHH--HHhcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 2256 568999998 6999999999 6888887753 23346788999999888886421 0 2234444455
Q ss_pred HHHHHHHHHHHHHcCCCceeeec-cceEEEEEecC--------ChHHHHHHHHHC-CceEeecCC-----CCEEEEecCC
Q 012363 375 GHYFKETLKQKLARNPHVKDVRG-LGLIIGIEFDV--------SATPVVDACRDS-GLLVLTAGK-----GNVVRLVPPL 439 (465)
Q Consensus 375 ~~~l~~~l~~~~~~~~~~~~~~~-~g~~~~i~~~~--------~~~~~~~~l~~~-Gv~v~~~~~-----~~~lRi~~~~ 439 (465)
.+++.+.|++ ++. ...++ .|+|+++++.. ...++.+.|+++ ||++.++.. ++++||+++
T Consensus 333 ~~~l~~~L~~----~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~- 406 (428)
T 1iay_A 333 HKHFTNGLEV----VGI-KCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA- 406 (428)
T ss_dssp HHHHHHHHHH----TTC-CBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECS-
T ss_pred HHHHHHHHHh----cCC-cccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe-
Confidence 5555555544 332 22334 57888888842 234788999886 999988641 368999988
Q ss_pred CCcHHHHHHHHHHHHHHHHH
Q 012363 440 IISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 440 ~~t~e~i~~~l~~l~~~l~~ 459 (465)
.++++++++++++|++++++
T Consensus 407 ~~~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 407 NMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp SSCHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHhc
Confidence 57999999999999998865
No 101
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.97 E-value=1.8e-30 Score=260.97 Aligned_cols=335 Identities=11% Similarity=0.020 Sum_probs=215.8
Q ss_pred CCCEEEecccCcccccCCC--CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhc-C-------CCeEEe--cCC
Q 012363 96 EGREYLDLSSGIAVNALGH--GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-F-------ADRVFF--SNT 163 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh--~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~-~-------~~~v~~--~~s 163 (465)
+|+.++||..+.+..+.|| .+|.+.+++.+++........+.+.....++++.+++++ + .++|++ |+|
T Consensus 28 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~g 107 (412)
T 1ajs_A 28 PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLG 107 (412)
T ss_dssp CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH
T ss_pred CCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCC
Confidence 3677899999876445554 458999999988732111111112222344555555444 2 589999 999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCC-----ceEEEEcCCcccCccccccccCC-CCcCCCCCCCC--CCceEeeCCCH
Q 012363 164 GTEANEAAIKFARKFQRHSNPDSKEPA-----TEFVSFTNSFHGRTMGALALTSK-EHYRSPFEPVM--PGVNFVEYGNI 235 (465)
Q Consensus 164 G~eA~~~al~~a~~~t~~~~~~~~~~~-----~~ii~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~d~ 235 (465)
|++|++.+++++..+. ++ ++|++.+|+||++...+...+.. .... +.. .+.. .|+
T Consensus 108 g~~a~~~~~~~~~~~~---------~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~----~~~~~~~~~----~d~ 170 (412)
T 1ajs_A 108 GTGALRIGAEFLARWY---------NGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSY----RYWDTEKRG----LDL 170 (412)
T ss_dssp HHHHHHHHHHHHHHHS---------SSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEE----ECEETTTTE----ECH
T ss_pred cHHHHHHHHHHHHHhC---------cCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEE----eeecCCCCc----cCH
Confidence 9999999988665432 46 89999999999987655444332 1111 110 1111 178
Q ss_pred HHHHhhcCC--CCeEEE-EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCC---ccccccccCCccc
Q 012363 236 EATRKLIQP--GKTAAV-FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG---YLWAHEHYGIFPD 309 (465)
Q Consensus 236 ~~le~~l~~--~~~a~v-i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g---~~~~~~~~~~~pd 309 (465)
++|++++++ .++.++ +++|+|++| . .++.+++++|.++|++||++||+||+|++|++.| .......+...+|
T Consensus 171 ~~l~~~l~~~~~~~~~v~~~~p~nptG-~-~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~ 248 (412)
T 1ajs_A 171 QGFLSDLENAPEFSIFVLHACAHNPTG-T-DPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGF 248 (412)
T ss_dssp HHHHHHHHHSCTTCEEEEESSSCTTTC-C-CCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCCcEEEEECCCCCCCC-C-CCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCC
Confidence 999998863 234444 456666654 3 5688999999999999999999999999998765 3222322211223
Q ss_pred ----EEEecccCCC-ccceeeEEe---CHHHH----hhccCCCCcCCCC-ChHHHHHHHHHHHHHhc--------CchHH
Q 012363 310 ----IMTLAKPLAG-GLPIGAALV---TEKVA----SAINYGDHGSTFA-GSPLVCNAAIAVLDKIS--------NPAFL 368 (465)
Q Consensus 310 ----i~t~sK~lg~-G~~iG~v~~---~~~i~----~~~~~~~~~~t~~-~~~~~~~aa~a~L~~~~--------~~~~~ 368 (465)
+.++||.+++ |+|+||+++ +++++ +.+.. .+..+++ .++++++++.++|+... .++..
T Consensus 249 ~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 327 (412)
T 1ajs_A 249 ELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQK-IVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMA 327 (412)
T ss_dssp CEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHH-HHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHH-HHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHH
Confidence 5589999997 999999999 88743 33331 1334555 58899999999997531 12344
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC-Cceee-eccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHH
Q 012363 369 ASVSKKGHYFKETLKQKLARNP-HVKDV-RGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQEL 446 (465)
Q Consensus 369 ~~~~~~~~~l~~~l~~~~~~~~-~~~~~-~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i 446 (465)
++++++.+++.+.|+++ ..| .+... +..|.+.++.+ +...+...|.++||++.++ +|++++. .+++++
T Consensus 328 ~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gv~v~~~-----~Ris~~~-~~~~~i 397 (412)
T 1ajs_A 328 DRILSMRSELRARLEAL--KTPGTWNHITDQIGMFSFTGL--NPKQVEYLINQKHIYLLPS-----GRINMCG-LTTKNL 397 (412)
T ss_dssp HHHHHHHHHHHHHHHHT--TCSSCCHHHHHCCSSEEECCC--CHHHHHHHHHTTCEECCTT-----SEEEGGG-CCTTTH
T ss_pred HHHHHHHHHHHHHHHhh--CCCCCeeEEcCCCceEEEeCC--CHHHHHHHHHhCCEEecCC-----cEEEeee-CCHHHH
Confidence 45555555555555443 101 12222 33456665544 3444445556889999863 5888774 489999
Q ss_pred HHHHHHHHHHHHHh
Q 012363 447 DQAVEILCKTLPVL 460 (465)
Q Consensus 447 ~~~l~~l~~~l~~~ 460 (465)
++++++|+++++++
T Consensus 398 ~~~~~~l~~~l~~~ 411 (412)
T 1ajs_A 398 DYVATSIHEAVTKI 411 (412)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998764
No 102
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.97 E-value=2.8e-30 Score=260.57 Aligned_cols=352 Identities=13% Similarity=0.064 Sum_probs=231.3
Q ss_pred EEecccCcccccCCCCCHHHHHHHHHHHh-hcccccCCCCCHH-HHHHHHHHHhhcC--CCeEEecCCHHHHH--HHHHH
Q 012363 100 YLDLSSGIAVNALGHGDADWIKAVVDQAN-VLTHVSNMYYSIP-QIELAKRLVACSF--ADRVFFSNTGTEAN--EAAIK 173 (465)
Q Consensus 100 ylD~~~~~~~~~lGh~~p~v~~a~~~~~~-~~~~~~~~~~~~~-~~~la~~l~~~~~--~~~v~~~~sG~eA~--~~al~ 173 (465)
.|||..|.+...+...+|.+++++.+++. ........|+... ..+|++.++++++ +++|++|+|+++++ ..+++
T Consensus 34 ~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~ 113 (422)
T 3d6k_A 34 SLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFDLISW 113 (422)
T ss_dssp CEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHH
T ss_pred eEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHH
Confidence 58888876532112245577777765531 1110112233332 5678888888776 67999999999997 56666
Q ss_pred HHHHHhhhcCCCCC-C-CCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEE
Q 012363 174 FARKFQRHSNPDSK-E-PATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVF 251 (465)
Q Consensus 174 ~a~~~t~~~~~~~~-~-~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi 251 (465)
++..... .+.... . .+++|++.+|+|+++...+...+...... +...+ . .|+++|++++++.++++|+
T Consensus 114 ~l~~~~~-~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v----~~~~~-g----~d~~~l~~~l~~~~~~~v~ 183 (422)
T 3d6k_A 114 SYTWGNN-DSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINV----PMTDE-G----PDMGVVRELVKDPQVKGMW 183 (422)
T ss_dssp HHHHCCT-TCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEE----EEETT-E----ECHHHHHHHHTSTTEEEEE
T ss_pred HhcCccc-ccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEec----CCCCC-C----CCHHHHHHHHhcCCCeEEE
Confidence 5542000 000000 0 03479999999999886554443221110 11111 1 2899999999754678887
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHH-HhCCEEEEeccccC--CCCCCcc-ccc-------cccCCcccEEEecccCCCc
Q 012363 252 VEPIQGEGGIYSATKEFLQFLRDACD-DAGALLVFDEVQCG--LGRTGYL-WAH-------EHYGIFPDIMTLAKPLAGG 320 (465)
Q Consensus 252 ~ep~~~~~G~~~~~~~~l~~l~~l~~-~~g~llI~DEv~~g--~gr~g~~-~~~-------~~~~~~pdi~t~sK~lg~G 320 (465)
+.|+.+|++..+++.+++++|.++|+ +||+++|+||+|.. |+..+.. ... +..+..+++.+|||..++|
T Consensus 184 ~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G 263 (422)
T 3d6k_A 184 TVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITHAG 263 (422)
T ss_dssp ECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTSCTT
T ss_pred EcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhhcCcc
Confidence 66654443334679999999999999 99999999999974 6544421 111 2345566778999996669
Q ss_pred cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhc-----CchHHHHHHHHHHHHHHHHHHHHHcCCCcee-
Q 012363 321 LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS-----NPAFLASVSKKGHYFKETLKQKLARNPHVKD- 394 (465)
Q Consensus 321 ~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~- 394 (465)
+|+||+++++++++.+.......+++.+++++.++.++|+... -+...+.++++.+.+.+.|.+.+...+.+..
T Consensus 264 lriG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~ 343 (422)
T 3d6k_A 264 SGVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWT 343 (422)
T ss_dssp SSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEC
T ss_pred cceEEEEeCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEe
Confidence 9999999999999888654445567889999999988886310 0122333444555666666655444443332
Q ss_pred eeccceEEEEEecC-ChHHHHHHHHHCCceEeecC---------CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012363 395 VRGLGLIIGIEFDV-SATPVVDACRDSGLLVLTAG---------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 395 ~~~~g~~~~i~~~~-~~~~~~~~l~~~Gv~v~~~~---------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
.+..|+++++.++. +...+.+.|.++||.+.+++ ..+++||+++. .+++++++++++|+++++++.+
T Consensus 344 ~p~~g~~~~~~~~~~~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~~~ 420 (422)
T 3d6k_A 344 SPTGGYFISVDVVPGTASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSL-PPVAELEVAMDGFATCVLMAAL 420 (422)
T ss_dssp CCSBSSCEEEEESTTCHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcceEEEEECCCCCHHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCC-CCHHHHHHHHHHHHHHHHHHHh
Confidence 33457888998843 46678888899999998832 13689998877 7999999999999999987754
No 103
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.97 E-value=1.4e-28 Score=246.15 Aligned_cols=331 Identities=16% Similarity=0.060 Sum_probs=224.4
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCC-------CCHHHHHHHHHHHhhcCC---CeEEecCCHH
Q 012363 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMY-------YSIPQIELAKRLVACSFA---DRVFFSNTGT 165 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~-------~~~~~~~la~~l~~~~~~---~~v~~~~sG~ 165 (465)
+|+.++++..+.. |+.+|++++++.+++++.......+ +.....+++++++++++. ++|++++||+
T Consensus 20 ~g~~~i~l~~~~~----~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t 95 (406)
T 1kmj_A 20 NGLPLAYLDSAAS----AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTT 95 (406)
T ss_dssp TTEECEECCTTTC----CCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHH
T ss_pred CCCceEEecCCcc----CCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChh
Confidence 4544444433322 4688999999999987642111111 234478899999999875 7899999999
Q ss_pred HHHHHHHHHHHHH-hhhcCCCCCCCCceEEEEcCCcccCccccc---cccCCCCcCCCCCCCCCCceEeeCCCHHHHHhh
Q 012363 166 EANEAAIKFARKF-QRHSNPDSKEPATEFVSFTNSFHGRTMGAL---ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKL 241 (465)
Q Consensus 166 eA~~~al~~a~~~-t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 241 (465)
+|+..+++.++.. . .++++|++.+++||+...... ...+..... .+...+. ..|+++|+++
T Consensus 96 ~a~~~~~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~----~~d~~~l~~~ 160 (406)
T 1kmj_A 96 EGINLVANSWGNSNV--------RAGDNIIISQMEHHANIVPWQMLCARVGAELRV---IPLNPDG----TLQLETLPTL 160 (406)
T ss_dssp HHHHHHHHHTHHHHC--------CTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEE---ECBCTTS----CBCGGGHHHH
T ss_pred HHHHHHHHHhhhhcC--------CCCCEEEEecccchHHHHHHHHHHHhCCCEEEE---EecCCCC----CcCHHHHHHH
Confidence 9999999987432 1 158899999999998764321 111111111 1111111 1278999999
Q ss_pred cCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE--EecccCCC
Q 012363 242 IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG 319 (465)
Q Consensus 242 l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~ 319 (465)
+++ ++++|++++.++++|.+.+ +++|.++|++||++||+||+|+. |.. .+..... .+|++ +++|.+|.
T Consensus 161 l~~-~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~-g~~--~~~~~~~--~~d~~~~s~~K~~g~ 230 (406)
T 1kmj_A 161 FDE-KTRLLAITHVSNVLGTENP----LAEMITLAHQHGAKVLVDGAQAV-MHH--PVDVQAL--DCDFYVFSGHKLYGP 230 (406)
T ss_dssp CCT-TEEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTT-TTS--CCCHHHH--TCSEEEEEGGGTTSC
T ss_pred hcc-CCeEEEEeCCCccccCcCC----HHHHHHHHHHcCCEEEEEchhhc-CCC--CCccccc--CCCEEEEEchhccCC
Confidence 975 5788888888777887765 99999999999999999999974 332 1122222 36665 68899953
Q ss_pred ccceeeEEeCHHHHhhccCCCCcC---------------------CCCChHHHHHHHH-HHHHHhcC---chHHHHHHHH
Q 012363 320 GLPIGAALVTEKVASAINYGDHGS---------------------TFAGSPLVCNAAI-AVLDKISN---PAFLASVSKK 374 (465)
Q Consensus 320 G~~iG~v~~~~~i~~~~~~~~~~~---------------------t~~~~~~~~~aa~-a~L~~~~~---~~~~~~~~~~ 374 (465)
..+|++++++++++.+.+...++ +.+.+++.+.+++ ++++.+.+ +.+.++++++
T Consensus 231 -~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~ 309 (406)
T 1kmj_A 231 -TGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNL 309 (406)
T ss_dssp -TTCEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred -CCcEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 22899999999998886543221 1234555665555 67776643 2344444455
Q ss_pred HHHHHHHHHHHHHcCCCceeeec--cceEEEEEec-CChHHHHHHHHHCCceEeecC-----------CCCEEEEecCCC
Q 012363 375 GHYFKETLKQKLARNPHVKDVRG--LGLIIGIEFD-VSATPVVDACRDSGLLVLTAG-----------KGNVVRLVPPLI 440 (465)
Q Consensus 375 ~~~l~~~l~~~~~~~~~~~~~~~--~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~-----------~~~~lRi~~~~~ 440 (465)
.+++.+. +.+.+.+..... .|.++.+.++ .+..++.+.|.++||.+.++. ..+++|++++..
T Consensus 310 ~~~l~~~----L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~ 385 (406)
T 1kmj_A 310 MHYALSQ----LESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMY 385 (406)
T ss_dssp HHHHHHH----HTTSTTEEEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTT
T ss_pred HHHHHHH----HhcCCCeEEecCCCcCCEEEEEECCCCHHHHHHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEeecC
Confidence 5555444 444443443444 6788888774 356788999999999998753 137899999999
Q ss_pred CcHHHHHHHHHHHHHHHHHh
Q 012363 441 ISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 441 ~t~e~i~~~l~~l~~~l~~~ 460 (465)
+|++|+++++++|+++++.+
T Consensus 386 ~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 386 NTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999988765
No 104
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.97 E-value=4.8e-29 Score=251.82 Aligned_cols=302 Identities=12% Similarity=0.071 Sum_probs=210.9
Q ss_pred CCHHHHHHHHHHHhhcC--C---------CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccc
Q 012363 138 YSIPQIELAKRLVACSF--A---------DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMG 206 (465)
Q Consensus 138 ~~~~~~~la~~l~~~~~--~---------~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~ 206 (465)
..+.++++++++.+.++ . ++|++|+|+++|+..+++++. .++++|++.+|+|+++...
T Consensus 80 ~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-----------~~gd~Vlv~~p~y~~~~~~ 148 (425)
T 2r2n_A 80 IPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII-----------NPGDNVLLDEPAYSGTLQS 148 (425)
T ss_dssp CHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHC-----------CTTCEEEEESSCCHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhC-----------CCCCEEEEeCCCcHHHHHH
Confidence 34557778888777665 2 589999999999999999764 2689999999999998765
Q ss_pred cccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC-----------CCeEEEEEcccCCCCCcccCCHHHHHHHHHH
Q 012363 207 ALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP-----------GKTAAVFVEPIQGEGGIYSATKEFLQFLRDA 275 (465)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-----------~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l 275 (465)
+...+.... . .+...+ . .|+++|+++++. .++++|+++|..+|++..+++.+.+++|.++
T Consensus 149 ~~~~g~~~~-~---v~~~~~-~----~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~ 219 (425)
T 2r2n_A 149 LHPLGCNII-N---VASDES-G----IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYEL 219 (425)
T ss_dssp HGGGTCEEE-E---ECEETT-E----ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHH
T ss_pred HHHcCCEEE-E---eCcCCC-C----CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHH
Confidence 543332211 1 011111 1 278999998862 3467887776433332245688999999999
Q ss_pred HHHhCCEEEEeccccCCCCCCcc----ccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHH
Q 012363 276 CDDAGALLVFDEVQCGLGRTGYL----WAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLV 351 (465)
Q Consensus 276 ~~~~g~llI~DEv~~g~gr~g~~----~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~ 351 (465)
|++||++||+||+|+++.+.|.. ..++..+....+.+|||+++.|+|+||+++++++++.+.......+++.|+++
T Consensus 220 a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~ 299 (425)
T 2r2n_A 220 ARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPKPLIERVILHIQVSTLHPSTFN 299 (425)
T ss_dssp HHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHHHHHHHHHHHHTTTCSSCHHH
T ss_pred HHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCHHHHHHHHHHHHHhcCCCCHHH
Confidence 99999999999999987655531 22222344456678999999899999999999998888654455678889999
Q ss_pred HHHHHHHHHHhcCc---hHHHHHHHHHHHHHHHHHHHHHc-CCCc-e-eeeccceEEEEEecC--ChHH-HHHHHHHCCc
Q 012363 352 CNAAIAVLDKISNP---AFLASVSKKGHYFKETLKQKLAR-NPHV-K-DVRGLGLIIGIEFDV--SATP-VVDACRDSGL 422 (465)
Q Consensus 352 ~~aa~a~L~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~-~~~~-~-~~~~~g~~~~i~~~~--~~~~-~~~~l~~~Gv 422 (465)
+.++.++|+.+.++ ++.+++++.....++.+.+.+.+ +|.+ . ..+..|.+++++++. +..+ +.+.|.++||
T Consensus 300 q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~l~~~gv 379 (425)
T 2r2n_A 300 QLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGINDVKELIEEKAVKMGV 379 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCSCCHHHHHTHHHHTTE
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCCCHHHHHHHHHHHCCc
Confidence 99999999864222 23333333333333444443433 3332 2 234567888998842 4455 5788889999
Q ss_pred eEeecCC--------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012363 423 LVLTAGK--------GNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 423 ~v~~~~~--------~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
.+.|+.. .+++||+++. .+++++++++++|++++++.
T Consensus 380 ~v~pg~~f~~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~~ 424 (425)
T 2r2n_A 380 LMLPGNAFYVDSSAPSPYLRASFSS-ASPEQMDVAFQVLAQLIKES 424 (425)
T ss_dssp ECEEGGGGSSSTTSCCCEEEEECSS-CCHHHHHHHHHHHHHHHHHH
T ss_pred EEechhhhcCCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHh
Confidence 9987521 2689998774 59999999999999988653
No 105
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.97 E-value=2e-29 Score=253.62 Aligned_cols=297 Identities=13% Similarity=0.067 Sum_probs=198.3
Q ss_pred HHHHHHHHHhhcC----CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc-----eEEEE-cCCcccCcccccccc
Q 012363 142 QIELAKRLVACSF----ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT-----EFVSF-TNSFHGRTMGALALT 211 (465)
Q Consensus 142 ~~~la~~l~~~~~----~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~-----~ii~~-~~~yhg~~~~~~~~~ 211 (465)
++++++++.+.++ +++|++|+||++|+..+++++.. +++ +|++. +|+||++...+....
T Consensus 81 r~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~-----------~gd~~~~~~vi~~~~p~~~~~~~~~~~~~ 149 (417)
T 3g7q_A 81 LNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAG-----------RRADGSTKKVLFPLAPEYIGYADSGLEDD 149 (417)
T ss_dssp HHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSB-----------C----CCBEEEESSCCCHHHHHC-----C
T ss_pred HHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHcC-----------CCccCCcceEEEeCCCccccchhhccchh
Confidence 4445555444333 68999999999999999997752 333 78886 999999875543221
Q ss_pred CCCCcCCCCCCCCCCceEeeC------CCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Q 012363 212 SKEHYRSPFEPVMPGVNFVEY------GNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVF 285 (465)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~------~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~ 285 (465)
.. ....+.+..++. -|+++|+ +.+ ++++|+++..++.+|. .++.+.+++|.++|++||+++|+
T Consensus 150 ~~-------~~~~~~~~~~~~~~~~~~~d~~~l~--~~~-~~~~v~~~~p~NptG~-~~~~~~~~~l~~~a~~~~~~li~ 218 (417)
T 3g7q_A 150 LF-------VSARPNIELLPEGQFKYHVDFEHLH--IGE-ETGMICVSRPTNPTGN-VITDEELMKLDRLANQHNIPLVI 218 (417)
T ss_dssp CE-------EECCCEEEEEGGGEEEEECCGGGCC--CCT-TEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCCEEE
T ss_pred hh-------ccccCcccccCCcccccccCHHHhc--ccc-CceEEEECCCCCCCCC-ccCHHHHHHHHHHHHHcCCEEEE
Confidence 10 011111222221 2777777 544 4555555433444454 45788899999999999999999
Q ss_pred eccccCCCCCCccc---cccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHh
Q 012363 286 DEVQCGLGRTGYLW---AHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKI 362 (465)
Q Consensus 286 DEv~~g~gr~g~~~---~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~ 362 (465)
||+|..+ ..+..+ .....+....+.+|||...+|+|+||+++++++++.+....+..+++.++++++++.+.|+..
T Consensus 219 De~~~~~-~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 297 (417)
T 3g7q_A 219 DNAYGVP-FPGIIFSEARPLWNPNIILCMSLSKLGLPGSRCGIIIANDKTITAIANMNGIISLAPGGMGPAMMCEMIKRN 297 (417)
T ss_dssp ECTTCTT-TTCCBCSCCCCCCCTTEEEEEESGGGTCTTSCCEEEECCHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTT
T ss_pred eCCCccc-cccccccccccCCCCCEEEEEechhccCCCcceEEEEeCHHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCc
Confidence 9999753 122111 111223445577899964468999999999999998876556667788999999999888743
Q ss_pred cCc-----hHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec---CChHHHHHHHHHCCceEeecCC-----
Q 012363 363 SNP-----AFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD---VSATPVVDACRDSGLLVLTAGK----- 429 (465)
Q Consensus 363 ~~~-----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~---~~~~~~~~~l~~~Gv~v~~~~~----- 429 (465)
... .+.++++++.+.+.+.|.+.+...+.....+..|.++++.++ .+..++.+.|.++||.+.++..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~ 377 (417)
T 3g7q_A 298 DLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAIFLWLWFKDLPITTELLYQRLKARGVLMVPGHYFFPGL 377 (417)
T ss_dssp CHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCCBSSEEEEECTTCSSCHHHHHHHHHHTTEECEEGGGGCTTB
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCCcceEEEEEcCCCCCCHHHHHHHHHHCCEEEECchhhCCCC
Confidence 211 134445556666666666544333332333456888888884 3678899999999999987531
Q ss_pred -------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhhc
Q 012363 430 -------GNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 430 -------~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
.+++||+++. +++++++++++|.++++++.++
T Consensus 378 ~~~~~~~~~~iRis~~~--~~~~i~~~~~~l~~~l~~~~~~ 416 (417)
T 3g7q_A 378 DKPWPHTHQCMRMNYVP--EPDKIEAGVKILAEEIERAWRE 416 (417)
T ss_dssp SSCCGGGGGEEEEESCS--CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCeEEEEecC--CHHHHHHHHHHHHHHHHHHHhc
Confidence 2589999874 9999999999999999887653
No 106
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.97 E-value=2e-29 Score=251.07 Aligned_cols=327 Identities=14% Similarity=0.083 Sum_probs=225.1
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccC----CCCC--HHHHHHHHHHHhhcC--CCeEEecCCHHHH
Q 012363 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN----MYYS--IPQIELAKRLVACSF--ADRVFFSNTGTEA 167 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~----~~~~--~~~~~la~~l~~~~~--~~~v~~~~sG~eA 167 (465)
++..|+|.. ..|+.+|.|++|+.+++....+... .++. ....+++++|+++++ .++|++++||++|
T Consensus 15 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 88 (390)
T 1elu_A 15 ANKTYFNFG------GQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTG 88 (390)
T ss_dssp TTSEECCTT------TCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHH
T ss_pred CCeEEecCC------ccCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHH
Confidence 345666643 2578889999999998876421111 2222 457889999999988 4589999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccc---cccCCCCcCCCCCCCC--CCceEeeCCCHHHHHhhc
Q 012363 168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL---ALTSKEHYRSPFEPVM--PGVNFVEYGNIEATRKLI 242 (465)
Q Consensus 168 ~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~le~~l 242 (465)
+..+++.++ . .++++|++.+|+||++..... ...+..... .+.. .+. ..|+++|++++
T Consensus 89 ~~~~~~~~~--~--------~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~~~~----~~d~~~l~~~i 151 (390)
T 1elu_A 89 CDIVLWGLD--W--------HQGDEILLTDCEHPGIIAIVQAIAARFGITYRF---FPVAATLNQ----GDAAAVLANHL 151 (390)
T ss_dssp HHHHHHHSC--C--------CTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEE---ECCGGGSSS----SCHHHHHHTTC
T ss_pred HHHHHhCCC--C--------CCCCEEEEecCcccHHHHHHHHHHHHhCcEEEE---EcCCCCCCc----cchHHHHHHhc
Confidence 999999763 1 158899999999999764321 111111100 0110 000 12789999999
Q ss_pred CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHH----HhCCEEEEeccccCCCCCCccccccccCCcccEEE--eccc
Q 012363 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACD----DAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKP 316 (465)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~----~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~ 316 (465)
++ ++++|++++.++++|.+.+ +++|.++|+ +||+++|+||+|+ +|... .+.....+|+++ ++|+
T Consensus 152 ~~-~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~li~Dea~~-~g~~~----~~~~~~~~d~~~~s~~K~ 221 (390)
T 1elu_A 152 GP-KTRLVILSHLLWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSLP----LDFSRLEVDYYAFTGHKW 221 (390)
T ss_dssp CT-TEEEEEEESBCTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTBC----CCTTTSCCSEEEEESSST
T ss_pred CC-CceEEEEeccccCCceecC----HHHHHHHHhhhhhhcCcEEEEEcccc-cCCcC----CChhhcCCCEEEcccccc
Confidence 75 5788888877777777765 899999999 9999999999997 44332 111233467765 8898
Q ss_pred CCCccceeeEEeCHHHHhhccCCC----------------------CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHH
Q 012363 317 LAGGLPIGAALVTEKVASAINYGD----------------------HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKK 374 (465)
Q Consensus 317 lg~G~~iG~v~~~~~i~~~~~~~~----------------------~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~ 374 (465)
+.+|.++|++++++++++.+.+.. ...+.+.++++++++.++++.+.+.++.+++.+.
T Consensus 222 ~~~~~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~ 301 (390)
T 1elu_A 222 FAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQA 301 (390)
T ss_dssp TCCCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred ccCCCceEEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777888999999999888776421 1112345778888888888866443333333333
Q ss_pred HHHHHHHHHHHHHcCCCceee---eccceEEEEEec--CChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHH
Q 012363 375 GHYFKETLKQKLARNPHVKDV---RGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQA 449 (465)
Q Consensus 375 ~~~l~~~l~~~~~~~~~~~~~---~~~g~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~ 449 (465)
...+++.+.+.+.+++.+... ++.|.++.+.++ .+..++.+.|.++||.+.++...+++||+++..+++++++++
T Consensus 302 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~iRis~~~~~~~~~i~~~ 381 (390)
T 1elu_A 302 ICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPLGHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDEEEINHL 381 (390)
T ss_dssp HHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSSCHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcEEecCccccccEEEEEcCCCCCHHHHHHHHHHCCEEEEecCCCCeEEEecccCCCHHHHHHH
Confidence 333444444444444333333 456888888873 357789999999999999875347899999889999999999
Q ss_pred HHHHHH
Q 012363 450 VEILCK 455 (465)
Q Consensus 450 l~~l~~ 455 (465)
+++|++
T Consensus 382 ~~~l~~ 387 (390)
T 1elu_A 382 LARLAD 387 (390)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 999865
No 107
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.97 E-value=3.9e-30 Score=259.92 Aligned_cols=353 Identities=14% Similarity=0.081 Sum_probs=233.3
Q ss_pred EEecccCcccccCCCCCHHHHHHH--HHHHhhcccccCCCCC-HHHHHHHHHHHhhcC--CCeEEecCCHHHHH--HHHH
Q 012363 100 YLDLSSGIAVNALGHGDADWIKAV--VDQANVLTHVSNMYYS-IPQIELAKRLVACSF--ADRVFFSNTGTEAN--EAAI 172 (465)
Q Consensus 100 ylD~~~~~~~~~lGh~~p~v~~a~--~~~~~~~~~~~~~~~~-~~~~~la~~l~~~~~--~~~v~~~~sG~eA~--~~al 172 (465)
.+||..|.+...+...++.+.+++ .+++.........|+. ....+|++.++++++ .++|++|+|+++|+ ..++
T Consensus 35 ~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~ 114 (427)
T 3ppl_A 35 KLDLTRGKPSSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVIS 114 (427)
T ss_dssp CEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHH
T ss_pred eEecCCCCCChHHCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHH
Confidence 478887765433332333466665 4444432211222332 235678888888776 68999999999999 5777
Q ss_pred HHHHHHhh-hcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEE
Q 012363 173 KFARKFQR-HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVF 251 (465)
Q Consensus 173 ~~a~~~t~-~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi 251 (465)
+++...+. ...++...++++|++.+|+|+++...+...+...... +...+. -|+++|+++++..++++|+
T Consensus 115 ~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~~~~v----~~~~~g-----~d~~~l~~~l~~~~~~~v~ 185 (427)
T 3ppl_A 115 WSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMISV----PMNEDG-----PDMDAVEELVKNPQVKGMW 185 (427)
T ss_dssp HHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCEEEEE----EEETTE-----ECHHHHHHHTTSTTEEEEE
T ss_pred HHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCEEEEe----CCCCCC-----CCHHHHHHHHhcCCCeEEE
Confidence 76653100 0000000017899999999998876554433221110 111110 1899999999645788998
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHH-HHhCCEEEEeccccCCCCCCcc----ccc------cccCCcccEEEecccCCCc
Q 012363 252 VEPIQGEGGIYSATKEFLQFLRDAC-DDAGALLVFDEVQCGLGRTGYL----WAH------EHYGIFPDIMTLAKPLAGG 320 (465)
Q Consensus 252 ~ep~~~~~G~~~~~~~~l~~l~~l~-~~~g~llI~DEv~~g~gr~g~~----~~~------~~~~~~pdi~t~sK~lg~G 320 (465)
++|..+|++....+.+.+++|.++| ++||+++|+||+|.++.+.+.. ... +..+...++.+|||.+++|
T Consensus 186 ~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G 265 (427)
T 3ppl_A 186 VVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAG 265 (427)
T ss_dssp ECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTT
T ss_pred ECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcC
Confidence 8885444333556888899999999 9999999999999985333321 111 1345566778999996679
Q ss_pred cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhc---C--chHHHHHHHHHHHHHHHHHHHHHcCCCce-e
Q 012363 321 LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS---N--PAFLASVSKKGHYFKETLKQKLARNPHVK-D 394 (465)
Q Consensus 321 ~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~---~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~ 394 (465)
+|+||+++++++++.+.......+++.+++++.++.++|+... + ....+.++++.+.+.+.|.+.+...+.+. .
T Consensus 266 ~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~ 345 (427)
T 3ppl_A 266 AGVSFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWT 345 (427)
T ss_dssp SSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEEC
T ss_pred ccEEEEEcCHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEe
Confidence 9999999999999888655555677889999999888876311 0 12334444555556666655444333222 2
Q ss_pred eeccceEEEEEec-CChHHHHHHHHHCCceEeecC---------CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012363 395 VRGLGLIIGIEFD-VSATPVVDACRDSGLLVLTAG---------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 395 ~~~~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~---------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
.+..|+++++.++ .+..++.+.|.++||.+.+++ ..+++||+++.. +++++++++++|.++++++..
T Consensus 346 ~p~~g~~~~~~~~~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~l~~~~~ 422 (427)
T 3ppl_A 346 VPAGGYFISLDVVPGTASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLP-PVEELEVAMDGVATCVLLAAA 422 (427)
T ss_dssp CCSBSSCEEEECSTTCHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccEEEEEECCcchHHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 3345888899884 357788999999999998832 237899988655 899999999999999987653
No 108
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.97 E-value=2.3e-29 Score=254.67 Aligned_cols=338 Identities=12% Similarity=0.060 Sum_probs=217.4
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccc--ccCCCC-CHHHHHHHHHHHhhc----C--CCeEEecCCHHH
Q 012363 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH--VSNMYY-SIPQIELAKRLVACS----F--ADRVFFSNTGTE 166 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~--~~~~~~-~~~~~~la~~l~~~~----~--~~~v~~~~sG~e 166 (465)
+|+++|||.++.+. -..+|.|++|+.+++++... ....|. .....+|++.+++++ + .++|++++|+++
T Consensus 54 ~~~~~i~l~~~~~~---~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~ 130 (432)
T 3ei9_A 54 PDAQVISLGIGDTT---EPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKC 130 (432)
T ss_dssp TTCCCEECSSCCCC---SCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHH
T ss_pred CCCCeEEccCCCCC---CCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCChHH
Confidence 57889999998663 34889999999999885322 112222 222345555555553 3 679999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCH----HHHHhhc
Q 012363 167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNI----EATRKLI 242 (465)
Q Consensus 167 A~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~----~~le~~l 242 (465)
++..+ ..+. + +++.|++.+|+|+++...+...+....+.. .......+..+|.++. .++++
T Consensus 131 al~~l-~~l~---~--------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~-- 195 (432)
T 3ei9_A 131 DISRL-QVMF---G--------SNVTIAVQDPSYPAYVDSSVIMGQTGQFNT-DVQKYGNIEYMRCTPENGFFPDLST-- 195 (432)
T ss_dssp HHHHH-HHHH---C--------TTCCEEEEESCCTHHHHHHHHHTCSCCEET-TTTEETTCEEEECCGGGTTSCCGGG--
T ss_pred HHHHH-HHHc---C--------CCCEEEEeCCCCHHHHHHHHHcCCcccccc-cccccCceEEeccCcccCCcCChhh--
Confidence 99874 3222 1 689999999999998766544332211100 0000012334443321 12222
Q ss_pred CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccc----cCCcccEEEecccCC
Q 012363 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEH----YGIFPDIMTLAKPLA 318 (465)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~----~~~~pdi~t~sK~lg 318 (465)
.++...++++.|.|++| . +++.+.+++|+++|++||++||+||+|++|...+....... .+....+.|+||++|
T Consensus 196 ~~~~~~v~l~~p~NPtG-~-~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 273 (432)
T 3ei9_A 196 VGRTDIIFFCSPNNPTG-A-AATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAG 273 (432)
T ss_dssp CCCCSEEEEESSCTTTC-C-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHC
T ss_pred CCCCCEEEEeCCCCCCC-C-CCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccC
Confidence 12233455555555444 3 45888999999999999999999999998755443222222 123345668999998
Q ss_pred -CccceeeEEeCHHH--------HhhccCCCCcCCCCChHHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHHHHH
Q 012363 319 -GGLPIGAALVTEKV--------ASAINYGDHGSTFAGSPLVCNAAIAVLDKIS---NPAFLASVSKKGHYFKETLKQKL 386 (465)
Q Consensus 319 -~G~~iG~v~~~~~i--------~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~---~~~~~~~~~~~~~~l~~~l~~~~ 386 (465)
.|+|+||+++++++ ++.+.......+++.++++++++.+++.... .++..++++++.+++++.|++
T Consensus 274 ~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-- 351 (432)
T 3ei9_A 274 FTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTS-- 351 (432)
T ss_dssp TTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CcccceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 69999999999887 5555432233455688999999888875311 133445555555566555544
Q ss_pred HcCCCceeeeccceEEEEEec-CChHHHHHHHHHC-CceEeecCC-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012363 387 ARNPHVKDVRGLGLIIGIEFD-VSATPVVDACRDS-GLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 387 ~~~~~~~~~~~~g~~~~i~~~-~~~~~~~~~l~~~-Gv~v~~~~~-----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
.+........|.++++.++ .+..+++..|+++ ||++.++.. .+++||++ ..+++++++++++|++--..
T Consensus 352 --~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~--~~~~e~l~~~l~rl~~~~~~ 427 (432)
T 3ei9_A 352 --LGYDVYGGKNAPYVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSA--FGHRENILEACRRFKQLYKH 427 (432)
T ss_dssp --TTCCEEECSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEEC--CSCHHHHHHHHHHHHHHHTT
T ss_pred --CCceecCCCcceEEEEECCCCCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEe--cCCHHHHHHHHHHHHHHhhh
Confidence 3322222235778888884 4567788888765 999987521 37899974 66999999999999875443
No 109
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=1.2e-28 Score=245.72 Aligned_cols=322 Identities=14% Similarity=0.078 Sum_probs=217.5
Q ss_pred CCCHHHHHHHHHHHhhcccccCCC--CCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhh--cCCCCC
Q 012363 114 HGDADWIKAVVDQANVLTHVSNMY--YSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRH--SNPDSK 187 (465)
Q Consensus 114 h~~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~--~~~~~~ 187 (465)
..+|++.+++.+++......+..+ ..+...++++++++.++ .++|++++||++|+..++++++..... ......
T Consensus 41 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~ 120 (397)
T 3f9t_A 41 NVLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSK 120 (397)
T ss_dssp CCCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccC
Confidence 367899999999887532211222 13346788999999887 678999999999999999988764100 000000
Q ss_pred CCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC-----CHHHHHhhcCCCCeEEEEEcccCCCCCcc
Q 012363 188 EPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPGKTAAVFVEPIQGEGGIY 262 (465)
Q Consensus 188 ~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~a~vi~ep~~~~~G~~ 262 (465)
.++++|++.+++|+++...+...+.. +..+|.+ |+++|++++++.++++|++++.++.+|.+
T Consensus 121 ~~gd~vl~~~~~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~ 187 (397)
T 3f9t_A 121 NEHPKIIVPITAHFSFEKGREMMDLE-------------YIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTI 187 (397)
T ss_dssp CSSCEEEEETTCCTHHHHHHHHHTCE-------------EEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCB
T ss_pred CCCeEEEECCcchhHHHHHHHHcCce-------------eEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCC
Confidence 14789999999998876544333221 2222322 89999999975245555555555556666
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEeccccCCC--CCCc---------cccccccCCcccEEEecccCCCccceeeEEeCHH
Q 012363 263 SATKEFLQFLRDACDDAGALLVFDEVQCGLG--RTGY---------LWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEK 331 (465)
Q Consensus 263 ~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g--r~g~---------~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~ 331 (465)
.+ +++|.++|++||++||+||+|+++. ..+. .+.... ++.+.+.+++|.+++|+++|+++++++
T Consensus 188 ~~----l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~ 262 (397)
T 3f9t_A 188 DN----IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILFKDI 262 (397)
T ss_dssp CC----HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEESSG
T ss_pred CC----HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCCceEEEEeCH
Confidence 54 9999999999999999999998742 2222 222233 444445567798888889999988654
Q ss_pred -HHhhcc---CCCC--------cCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccc
Q 012363 332 -VASAIN---YGDH--------GSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLG 399 (465)
Q Consensus 332 -i~~~~~---~~~~--------~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g 399 (465)
+.+.+. +... +.+...+++++.++++.+.....++..++++++.+++.+.|++. .+.. ...+.+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~--~~~~~~ 338 (397)
T 3f9t_A 263 GYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN--NFKP--VIEPIL 338 (397)
T ss_dssp GGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCCB--SSCCSS
T ss_pred HHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHC--CCEE--EcCCCc
Confidence 444432 1111 22233466777777776654333556677777777777777664 3322 223456
Q ss_pred eEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012363 400 LIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 400 ~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
.++++.+. ...++.+.|.++||.+.++..++++|++++..+|++++++++++|+++++
T Consensus 339 ~~~~~~~~-~~~~~~~~l~~~gi~v~~~~~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 339 NIVAIEDE-DYKEVCKKLRDRGIYVSVCNCVKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp SEEEEECT-THHHHHHHHHHTTCBCEECSSSSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred cEEEEEeC-CHHHHHHHHHhCCeEEeccCCCCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 77777763 36789999999999999876558999999988999999999999998764
No 110
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.97 E-value=1.6e-29 Score=254.71 Aligned_cols=338 Identities=12% Similarity=0.059 Sum_probs=224.5
Q ss_pred CCEEEecccCcc---cccCCCCCHHHHHHHHHHHhhc--ccccCCCCCHHHHHHHHHHHhhcCCC---eEEecCCHHHHH
Q 012363 97 GREYLDLSSGIA---VNALGHGDADWIKAVVDQANVL--THVSNMYYSIPQIELAKRLVACSFAD---RVFFSNTGTEAN 168 (465)
Q Consensus 97 G~~ylD~~~~~~---~~~lGh~~p~v~~a~~~~~~~~--~~~~~~~~~~~~~~la~~l~~~~~~~---~v~~~~sG~eA~ 168 (465)
|..+|||..+.+ ...+. .+|.|.+++.+..... .+....+..+.++++++++....+.+ +|++|+||++|+
T Consensus 37 ~~~~i~l~~g~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al 115 (418)
T 3rq1_A 37 RENVVNGTLGAIHDEEGNLV-FLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGI 115 (418)
T ss_dssp GGGCEECCSSCCBCTTSCBC-CCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHH
T ss_pred CCCeEECCCCcccCCCCCcc-ccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhcccCccccccEEECCchHHHH
Confidence 345677777654 12222 6677888876644321 11111223344666777776665666 999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC----
Q 012363 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP---- 244 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~---- 244 (465)
..+++.+. .++++|++.+|+|+++...+...+...... +...... ..|+++|++++++
T Consensus 116 ~~~~~~l~-----------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v----~~~~~~~---~~d~~~l~~~l~~~~~~ 177 (418)
T 3rq1_A 116 HHLIHNYT-----------EPGDEVLTADWYWGAYRVICSDTGRTLVTY----SLFDEHN---NFNHEAFQNRVNELAAK 177 (418)
T ss_dssp HHHHHHHS-----------CTTCEEEEESSCCTHHHHHHHHTTCEEEEE----CSBCTTS---SBCHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-----------CCCCEEEECCCCchhHHHHHHHcCCEEEEE----eeeCCCC---CcCHHHHHHHHHHhhcc
Confidence 99998664 268999999999998876554444322211 1111110 1278999998863
Q ss_pred CCeEEEEEc-ccCCCCCcccCCHHHHHHHHHHHH------HhCCEEEEeccccCCCCCCc---cccccccCCccc---EE
Q 012363 245 GKTAAVFVE-PIQGEGGIYSATKEFLQFLRDACD------DAGALLVFDEVQCGLGRTGY---LWAHEHYGIFPD---IM 311 (465)
Q Consensus 245 ~~~a~vi~e-p~~~~~G~~~~~~~~l~~l~~l~~------~~g~llI~DEv~~g~gr~g~---~~~~~~~~~~pd---i~ 311 (465)
+..++++++ |.++++|. .++.+.+++|+++|+ +||++||+||+|.+|++.|. .+.....++.++ ++
T Consensus 178 ~~~~~vi~~~p~~NPtG~-~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 256 (418)
T 3rq1_A 178 QTNVVVIFNTPGNNPTGY-SIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCV 256 (418)
T ss_dssp CSEEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEE
T ss_pred CCCEEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEE
Confidence 445455554 62444454 458888999999999 89999999999999977664 222233345555 22
Q ss_pred --EecccCC-CccceeeEEe---CHHHHhhccCCCC----cCCCCChHHHHHHHHHHHHHhc------C--chHHHHHHH
Q 012363 312 --TLAKPLA-GGLPIGAALV---TEKVASAINYGDH----GSTFAGSPLVCNAAIAVLDKIS------N--PAFLASVSK 373 (465)
Q Consensus 312 --t~sK~lg-~G~~iG~v~~---~~~i~~~~~~~~~----~~t~~~~~~~~~aa~a~L~~~~------~--~~~~~~~~~ 373 (465)
+|||.++ .|+|+||+++ ++++++.+..... +.+.+.+.+++.++.++|+... + ..+.+++++
T Consensus 257 ~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~ 336 (418)
T 3rq1_A 257 CYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRD 336 (418)
T ss_dssp EEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 7999998 5899999999 8999887754211 1223578888888888775321 0 123445555
Q ss_pred HHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHH
Q 012363 374 KGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEIL 453 (465)
Q Consensus 374 ~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l 453 (465)
+.+.+.+.|+++ .+.. ..+..|.++++.+ .+..++++.|.++||.+.+++ +++||++. .++++++++++++|
T Consensus 337 ~~~~l~~~L~~~--g~~~--~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~g~--~~iRis~~-~~~~~~i~~~~~~l 408 (418)
T 3rq1_A 337 RADIFKQEAAQV--GLPM--LPYRGGFFITIPT-DSANAICEELKKEHIYVIALA--NGIRIAAC-GIPKCQMTGLAEKI 408 (418)
T ss_dssp HHHHHHHHHHHH--TCCC--CCCCSSSEEEEEC-TTHHHHHHHHHHTTEECEECS--SEEEEEGG-GSCHHHHTTHHHHH
T ss_pred HHHHHHHHHHhc--CCCC--CCCCceEEEEcCC-CCHHHHHHHHHhCCEEEecCC--CCeEEEEe-cCCHHHHHHHHHHH
Confidence 666666666554 2322 2223355566655 357789999999999999874 67999865 46999999999999
Q ss_pred HHHHHHhhh
Q 012363 454 CKTLPVLDS 462 (465)
Q Consensus 454 ~~~l~~~~~ 462 (465)
+++++++.+
T Consensus 409 ~~~l~~~~~ 417 (418)
T 3rq1_A 409 YNAMKSLGK 417 (418)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHhc
Confidence 999987653
No 111
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.97 E-value=4.7e-29 Score=249.85 Aligned_cols=327 Identities=13% Similarity=0.074 Sum_probs=217.2
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccc--cCCC-CCHHHHHHHHHHHhh--cC---CCeEEecCCHHHHH
Q 012363 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV--SNMY-YSIPQIELAKRLVAC--SF---ADRVFFSNTGTEAN 168 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~--~~~~-~~~~~~~la~~l~~~--~~---~~~v~~~~sG~eA~ 168 (465)
|+++|||.++.+ .++ .+|.+++++.++++..... ...| +.....++++.++++ .+ .++|++++|+++|+
T Consensus 32 ~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al 108 (400)
T 3asa_A 32 QHTVINLSIGDT--TQP-LNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDL 108 (400)
T ss_dssp TSCCEECSSCCC--CCC-CCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHH
T ss_pred CCceEeccCCCC--CCC-CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHH
Confidence 677899988865 344 6899999999988764221 1223 223356788888887 34 67899999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCH----HHHHhhcCC
Q 012363 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNI----EATRKLIQP 244 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~----~~le~~l~~ 244 (465)
..+++++. ++++|++.+|+|+++...+...+.. .+..+|.++- .++++.
T Consensus 109 ~~~~~~~~------------~gd~Vl~~~p~y~~~~~~~~~~g~~------------~~~~~~~~~~~~~~~~l~~~--- 161 (400)
T 3asa_A 109 FRLLSFFG------------PNQTVAIQDPSYPAYLDIARLTGAK------------EIIALPCLQENAFFPEFPED--- 161 (400)
T ss_dssp HHHHHHHC------------SSCEEEEEESCCHHHHHHHHHTTCS------------EEEEEECCGGGTTCCCCCTT---
T ss_pred HHHHHHcC------------CCCEEEECCCCcHHHHHHHHHcCCc------------ceEecccchhcCcccChhhc---
Confidence 98665331 5789999999999987544332211 0112222100 011211
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc-cccccccC----CcccEEEecccCC-
Q 012363 245 GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAHEHYG----IFPDIMTLAKPLA- 318 (465)
Q Consensus 245 ~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~-~~~~~~~~----~~pdi~t~sK~lg- 318 (465)
.++++|++++.++++|. .++.+++++|.++|++||+++|+||+|++|++.|. ......++ ....+.++||.+|
T Consensus 162 ~~~~~v~l~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~ 240 (400)
T 3asa_A 162 THIDILCLCSPNNPTGT-VLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGF 240 (400)
T ss_dssp CCCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTT
T ss_pred cCccEEEEeCCCCCCCC-cCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCC
Confidence 24555555443444454 46889999999999999999999999998865553 12222222 2344668999998
Q ss_pred CccceeeEEeCHHH-------HhhccCCCCcCCC-CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCC
Q 012363 319 GGLPIGAALVTEKV-------ASAINYGDHGSTF-AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNP 390 (465)
Q Consensus 319 ~G~~iG~v~~~~~i-------~~~~~~~~~~~t~-~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 390 (465)
+|+|+||+++++++ ++.+.......++ +.|++++.++.++|+....++..++++++.+++.+.|++. +
T Consensus 241 ~GlriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~----g 316 (400)
T 3asa_A 241 AGIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLAT----G 316 (400)
T ss_dssp TTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT----T
T ss_pred cchheeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHC----C
Confidence 79999999999887 4444321222334 5789999999999986534566777777887777777653 3
Q ss_pred Cceeeec-cceEEEEE-ec--CChHHHHHHHHH-CCceEeecC-----CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012363 391 HVKDVRG-LGLIIGIE-FD--VSATPVVDACRD-SGLLVLTAG-----KGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 391 ~~~~~~~-~g~~~~i~-~~--~~~~~~~~~l~~-~Gv~v~~~~-----~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
. ....+ .|.++++. ++ .+..++.+.|++ +||.+.++. .++++||+ +..+++++++++++|++++++.
T Consensus 317 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis--~~~~~e~i~~~l~~l~~~~~~~ 393 (400)
T 3asa_A 317 F-EVFGGEHAPYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFS--SLGKREDILAACERLQMAPALQ 393 (400)
T ss_dssp C-EEEECSSSSEEEEECCCTTCCTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEE--CCSCHHHHHHHHHHHHC-----
T ss_pred C-eeeCCCCceEEEEeccCCCCCHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEE--eeCCHHHHHHHHHHHHHHHHhh
Confidence 2 23333 47788888 63 245568888875 599998763 13679997 4679999999999999988754
Q ss_pred h
Q 012363 461 D 461 (465)
Q Consensus 461 ~ 461 (465)
.
T Consensus 394 ~ 394 (400)
T 3asa_A 394 S 394 (400)
T ss_dssp -
T ss_pred h
Confidence 3
No 112
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.97 E-value=1.3e-29 Score=253.22 Aligned_cols=332 Identities=12% Similarity=0.049 Sum_probs=215.1
Q ss_pred CCEEEecccCcccccCC--CCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhc-----CCCeEEe--cCCHHHH
Q 012363 97 GREYLDLSSGIAVNALG--HGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-----FADRVFF--SNTGTEA 167 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lG--h~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~-----~~~~v~~--~~sG~eA 167 (465)
|..++||..+.+..+.+ +.+|.|.+++.++++... ...+.+.....++++.+++++ ..++|++ |+||++|
T Consensus 25 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a 103 (394)
T 2ay1_A 25 RQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETET-TKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGA 103 (394)
T ss_dssp CTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCC-CCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHH
T ss_pred CccccccccceeeCCCCCccCcHHHHHHHHHhcCCcc-cCCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhH
Confidence 45689999988755555 578999999998876521 111112222345555555543 2578999 9999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCC--CCceEeeCCCHHHHHhhcCCC
Q 012363 168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM--PGVNFVEYGNIEATRKLIQPG 245 (465)
Q Consensus 168 ~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~le~~l~~~ 245 (465)
++.++++++.+. ++++|++.+|+||++...+...+...... +.. .+.. .|+++++++++..
T Consensus 104 ~~~~~~~~~~~~---------~gd~vl~~~p~~~~~~~~~~~~g~~~~~~----~~~~~~~~~----~d~~~l~~~l~~~ 166 (394)
T 2ay1_A 104 LRQALELARMAN---------PDLRVFVSDPTWPNHVSIMNFMGLPVQTY----RYFDAETRG----VDFEGMKADLAAA 166 (394)
T ss_dssp HHHHHHHHHHHC---------TTCCEEEEESCCHHHHHHHHHHTCCEEEE----ECEETTTTE----ECHHHHHHHHHTC
T ss_pred HHHHHHHHHhcC---------CCCEEEEcCCCChhHHHHHHHcCCceEEE----ecccccCCc----cCHHHHHHHHHhC
Confidence 999999877543 47899999999999876554443221110 110 0111 1789999998632
Q ss_pred --CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCC--cccccccc-CCccc---EEEecccC
Q 012363 246 --KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG--YLWAHEHY-GIFPD---IMTLAKPL 317 (465)
Q Consensus 246 --~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g--~~~~~~~~-~~~pd---i~t~sK~l 317 (465)
.++++++...++++|. .++.+++++|.++|++||+++|+||+|++|++.| .......+ ...++ +.++||.+
T Consensus 167 ~~~~~~~~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 245 (394)
T 2ay1_A 167 KKGDMVLLHGCCHNPTGA-NLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNF 245 (394)
T ss_dssp CTTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTT
T ss_pred CCCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCC
Confidence 3455554444444454 5688999999999999999999999999987653 11112211 11233 44789999
Q ss_pred C-CccceeeEEe---CHHHHhhccCC---CCcCCCC-ChHHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHHHH
Q 012363 318 A-GGLPIGAALV---TEKVASAINYG---DHGSTFA-GSPLVCNAAIAVLDKIS--------NPAFLASVSKKGHYFKET 381 (465)
Q Consensus 318 g-~G~~iG~v~~---~~~i~~~~~~~---~~~~t~~-~~~~~~~aa~a~L~~~~--------~~~~~~~~~~~~~~l~~~ 381 (465)
+ +|+|+||+++ ++++++.+... .+..+++ .++++++++.++|+... .++..++++++.+++.+.
T Consensus 246 ~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 325 (394)
T 2ay1_A 246 GIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGE 325 (394)
T ss_dssp TCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 6999999998 66654433210 1123333 48899999988887431 133445555566666666
Q ss_pred HHHHHHcCCCceee-eccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012363 382 LKQKLARNPHVKDV-RGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 382 l~~~~~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
|+++.... .+... +..|.++++.+ +...+.+.|.++||++.++ +||+++ .++++++++++++|+++
T Consensus 326 L~~~~~~~-~~~~~~~~~g~~~~~~~--~~~~~~~~l~~~gi~v~~~-----~Ris~~-~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 326 LRDLSGSD-RFGFVAEHRGMFSRLGA--TPEQVKRIKEEFGIYMVGD-----SRINIA-GLNDNTIPILARAIIEV 392 (394)
T ss_dssp HHHHHTSS-TTTHHHHCCSSEEECCC--CHHHHHHHHHHHCEECCTT-----CEEEGG-GCCTTTHHHHHHHHHHH
T ss_pred HHhcCCCC-CeeEEcCCceEEEeeCC--CHHHHHHHHHhCCEEecCC-----CeEEee-cCCHhhHHHHHHHHHHc
Confidence 65542110 12222 23467766655 3455666777899999763 599887 47899999999999875
No 113
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.97 E-value=6.2e-29 Score=249.90 Aligned_cols=334 Identities=11% Similarity=0.068 Sum_probs=218.6
Q ss_pred CCEEEecccCcccccCCC--CCHHHHHHHHHHHhhc--ccccCCCCCHHHHHHHHHHHhhcCCC---eEEecCCHHHHHH
Q 012363 97 GREYLDLSSGIAVNALGH--GDADWIKAVVDQANVL--THVSNMYYSIPQIELAKRLVACSFAD---RVFFSNTGTEANE 169 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh--~~p~v~~a~~~~~~~~--~~~~~~~~~~~~~~la~~l~~~~~~~---~v~~~~sG~eA~~ 169 (465)
|+.+|||..+.+...-|+ .+|.|.+|+.+..... .+....+..+.++++++++.+..+.+ +|++|+||++|+.
T Consensus 36 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~~~~~~~~i~~t~g~~~al~ 115 (413)
T 3t18_A 36 REAVINAALGTLLDDKGKIIALPSVYDRLDEMDRSHIASYAPIEGEKDYRKIVIDTLFGPYKPEGYISAIATPGGTGAIR 115 (413)
T ss_dssp GGGCEECCSCCCBCTTSCBCCCHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHH
T ss_pred ccceEeccccCccCCCCCcCChHHHHHHHHhcCcccccCcCCCCCCHHHHHHHHHHHhcccCccccCcEEEcCccHHHHH
Confidence 456788888765322232 5677888876643321 12122223344777777776665556 9999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCC-CCCceEeeCCCHHHHHhhcCC----
Q 012363 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV-MPGVNFVEYGNIEATRKLIQP---- 244 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~le~~l~~---- 244 (465)
.+++.+. .+++.|++.+|+|+++...+...+...... +. ..+.. .|+++|++++++
T Consensus 116 ~~~~~~~-----------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~----~~~~~~~~----~d~~~l~~~l~~~~~~ 176 (413)
T 3t18_A 116 SAIFSYL-----------DEGDPLICHDYYWAPYRKICEEFGRNFKTF----EFFTDDFA----FNIDVYKEAIDEGIRD 176 (413)
T ss_dssp HHHHHHC-----------CSSCEEEEESSCCTHHHHHHHHHTCEEEEE----CCBCTTSS----BCHHHHHHHHHHHHHH
T ss_pred HHHHHhc-----------CCCCEEEECCCCcccHHHHHHHhCCeEEEe----eccCCCCC----cCHHHHHHHHHHHhhc
Confidence 9998664 268999999999998876554443322111 11 01111 288999999863
Q ss_pred CCeEEEEEc-ccCCCCCcccCCHHHHHHHHHHHH------HhCCEEEEeccccCCCCCCcc---ccccccCCccc---EE
Q 012363 245 GKTAAVFVE-PIQGEGGIYSATKEFLQFLRDACD------DAGALLVFDEVQCGLGRTGYL---WAHEHYGIFPD---IM 311 (465)
Q Consensus 245 ~~~a~vi~e-p~~~~~G~~~~~~~~l~~l~~l~~------~~g~llI~DEv~~g~gr~g~~---~~~~~~~~~pd---i~ 311 (465)
+..++++++ |.++++|. +++.+.+++|+++|+ +||++||+||+|.+|++.|.. +.....++.++ ++
T Consensus 177 ~~~~~vi~~~p~~NPtG~-~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 255 (413)
T 3t18_A 177 SDRIASLINSPGNNPTGY-SLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGDQQRKFFEKFSNLPRNLFVVV 255 (413)
T ss_dssp CSEEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSSTTTGGGGGGTTCCTTEEEEE
T ss_pred CCCEEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHHhhccCCcEEEEEecccccccCChhhHHHHHHHHhhcCCCeeEEE
Confidence 345456555 52444454 458888999999999 899999999999999877642 22223344445 22
Q ss_pred --EecccCC-CccceeeEEe---CHHHHhhccCCCC----cCCCCChHHHHHHHHHHHHHhc-------CchHHHHHHHH
Q 012363 312 --TLAKPLA-GGLPIGAALV---TEKVASAINYGDH----GSTFAGSPLVCNAAIAVLDKIS-------NPAFLASVSKK 374 (465)
Q Consensus 312 --t~sK~lg-~G~~iG~v~~---~~~i~~~~~~~~~----~~t~~~~~~~~~aa~a~L~~~~-------~~~~~~~~~~~ 374 (465)
+|||.++ .|+|+||+++ ++++++.+..... +.+.+.+++++.++.++|+... .+.+.++++++
T Consensus 256 ~~S~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~ 335 (413)
T 3t18_A 256 AFSMSKSHTAYGLRSGAAVGISSSKEIIEEFEASLAHSARCNWSNGTHAAQNILIELERAENKKIYEQELVDLRNMLKSR 335 (413)
T ss_dssp EEEHHHHTTCGGGCCEEEEEEESCHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCccCCCcCcCcEEEEEecCCHHHHHHHHHHHHHhhhccccCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 7899999 6999999998 8999888764311 1224578888888887775321 01233444445
Q ss_pred HHHHHHHHHHHHHcCCCceeeecc-ceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHH
Q 012363 375 GHYFKETLKQKLARNPHVKDVRGL-GLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEIL 453 (465)
Q Consensus 375 ~~~l~~~l~~~~~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l 453 (465)
.+.+.+.|++ .+. ....+. |.++++.+ .+..++.+.|.++||.+.+++ +++||+++.. +++++ +++|
T Consensus 336 ~~~l~~~l~~----~g~-~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gv~v~~g~--~~iRis~~~~-~~~~~---l~~l 403 (413)
T 3t18_A 336 ADVFVTAAKE----NKL-TMIPYFGGFFTFIPT-DKAFDIVKDLEKENIFTIPSA--KGIRVAICGV-GEEKI---PKLV 403 (413)
T ss_dssp HHHHHHHHHH----TTC-CCBCCCSSSCEEEEC-SCHHHHHHHHHHTTEECEECS--SEEEECTTTS-CGGGH---HHHH
T ss_pred HHHHHHHHHH----cCC-CccCCCceEEEEeCC-CCHHHHHHHHHhCCEEEecCC--CceEEEEeeC-CHHHH---HHHH
Confidence 5555555544 332 222333 45566655 467789999999999999873 7899988744 44555 8888
Q ss_pred HHHHHHhhh
Q 012363 454 CKTLPVLDS 462 (465)
Q Consensus 454 ~~~l~~~~~ 462 (465)
.++++++++
T Consensus 404 ~~~l~~~~~ 412 (413)
T 3t18_A 404 QRLAFYTNK 412 (413)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 888887654
No 114
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.96 E-value=9.4e-30 Score=251.80 Aligned_cols=321 Identities=13% Similarity=0.104 Sum_probs=227.4
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcc-------cccCCCCCHHHHHHHHH-HHhhcCCCeEEecCCHHHHHH
Q 012363 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-------HVSNMYYSIPQIELAKR-LVACSFADRVFFSNTGTEANE 169 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~-------~~~~~~~~~~~~~la~~-l~~~~~~~~v~~~~sG~eA~~ 169 (465)
-.|||+.. +.++.+|++.+++.+++.... +....++.+...+++++ ++++++.++|++++||++|+.
T Consensus 9 ~i~ld~~~-----~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~~v~~~~g~t~a~~ 83 (371)
T 2e7j_A 9 FINIDPLQ-----TGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKF 83 (371)
T ss_dssp CEECCHHH-----HTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSSEEEEESSHHHHHH
T ss_pred cEEecccc-----cCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCCEEEEeCChHHHHH
Confidence 45777633 245688999999999876532 11122344457899999 999998559999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEee--CC-----CHHHHHhhc
Q 012363 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVE--YG-----NIEATRKLI 242 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----d~~~le~~l 242 (465)
.+++.+. .++++|++.+++||+....+...+.. +..+| .+ |+++|++++
T Consensus 84 ~~~~~~~-----------~~gd~vl~~~~~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~d~~~l~~~l 139 (371)
T 2e7j_A 84 AVMHSLA-----------KKDAWVVMDENCHYSSYVAAERAGLN-------------IALVPKTDYPDYAITPENFAQTI 139 (371)
T ss_dssp HHHHHHC-----------CTTCEEEEETTCCHHHHHHHHHTTCE-------------EEEECCCCTTTCCCCHHHHHHHH
T ss_pred HHHHHHh-----------CCCCEEEEccCcchHHHHHHHHcCCe-------------EEEeecccCCCCCcCHHHHHHHH
Confidence 9999774 16889999999999887664332211 12222 22 899999998
Q ss_pred CC----CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE--Eeccc
Q 012363 243 QP----GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKP 316 (465)
Q Consensus 243 ~~----~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~ 316 (465)
+. .++++|++++.++++|.+.+ +++|.++|++||+++|+||+|+.+ ..+ .....++ +|++ ++||+
T Consensus 140 ~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~li~D~a~~~~-~~~--~~~~~~~--~di~~~s~sK~ 210 (371)
T 2e7j_A 140 EETKKRGEVVLALITYPDGNYGNLPD----VKKIAKVCSEYDVPLLVNGAYAIG-RMP--VSLKEIG--ADFIVGSGHKS 210 (371)
T ss_dssp HHHTTTSCEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTTBT-TBC--CCHHHHT--CSEEEEEHHHH
T ss_pred HhhcccCCeEEEEEECCCCCCcccCC----HHHHHHHHHHcCCeEEEECccccC-CCC--CChhhcC--CCEEEecCCcC
Confidence 62 36788888888777777765 799999999999999999999864 222 1222333 4555 56899
Q ss_pred CCCccceeeEEeCHHHHhh-ccCCCC--cC-----CCCChHHHHHHHHHHHHHhcCchHHHHH--HHHHHHHHHHHHHHH
Q 012363 317 LAGGLPIGAALVTEKVASA-INYGDH--GS-----TFAGSPLVCNAAIAVLDKISNPAFLASV--SKKGHYFKETLKQKL 386 (465)
Q Consensus 317 lg~G~~iG~v~~~~~i~~~-~~~~~~--~~-----t~~~~~~~~~aa~a~L~~~~~~~~~~~~--~~~~~~l~~~l~~~~ 386 (465)
+++|.|+|++++++++++. +.+... .. +++.++..++++.++++.+.+ ++.+++ +++.+++.+.|+++
T Consensus 211 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~l~~~L~~~- 288 (371)
T 2e7j_A 211 MAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRE-RIKRWDEEVEKARRFAAEMEKL- 288 (371)
T ss_dssp SSCCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHH-HGGGHHHHHHHHHHHHHHHHHT-
T ss_pred CCCCCCcEEEEEechhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc-
Confidence 9987899999999998887 765433 22 455677888888888887654 666777 77888888777664
Q ss_pred HcCCCceeeeccceEEEEEecCChHHHHHHHHHCCceEeec-------C-CCCEEE-EecCCC-CcHHHHHHHHHHHHHH
Q 012363 387 ARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTA-------G-KGNVVR-LVPPLI-ISEQELDQAVEILCKT 456 (465)
Q Consensus 387 ~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~-------~-~~~~lR-i~~~~~-~t~e~i~~~l~~l~~~ 456 (465)
.+.......+.+.++++.++ +..++.+.|.++||.+.+. + ..+++| ++++.. ++++++++++++|+++
T Consensus 289 -~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~ 366 (371)
T 2e7j_A 289 -GIKQLGDNPHNHDLMFFHAE-VLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEI 366 (371)
T ss_dssp -TCEEESSSSCCSSEEEEECH-HHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred -CcEEecCCCccCceEEEECC-CHHHHHHHHHHCCEEEEeccccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHH
Confidence 22211111114778888875 5667888888999998761 1 136799 998877 8999999999999999
Q ss_pred HHHh
Q 012363 457 LPVL 460 (465)
Q Consensus 457 l~~~ 460 (465)
++++
T Consensus 367 ~~~~ 370 (371)
T 2e7j_A 367 IEKY 370 (371)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 8764
No 115
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.96 E-value=1.3e-28 Score=249.86 Aligned_cols=298 Identities=15% Similarity=0.136 Sum_probs=202.2
Q ss_pred HHHHHHHHHhhcC----CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc--------------eEEEE-cCCccc
Q 012363 142 QIELAKRLVACSF----ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT--------------EFVSF-TNSFHG 202 (465)
Q Consensus 142 ~~~la~~l~~~~~----~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~--------------~ii~~-~~~yhg 202 (465)
++++++++.+.++ .++|++|+||++|+.++++.+.. +++ +||+. +|+|++
T Consensus 89 r~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~-----------~gd~~~~~~~~~~g~~~~vi~~~~p~~~~ 157 (444)
T 3if2_A 89 IDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGG-----------AFVNEHSQDKESKSVDKSILLPLTPEYIG 157 (444)
T ss_dssp HHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSE-----------EEECC-------CEEEEEEEESSSSCCGG
T ss_pred HHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhC-----------CCccccccccccccccceEEEeCCCCccc
Confidence 5555555544433 68999999999999999987642 344 57665 899998
Q ss_pred CccccccccCCCCcCCCCCCCCCCceEee----------CCCHHHHHhh---cCCCCeEEEEE-cccCCCCCcccCCHHH
Q 012363 203 RTMGALALTSKEHYRSPFEPVMPGVNFVE----------YGNIEATRKL---IQPGKTAAVFV-EPIQGEGGIYSATKEF 268 (465)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~d~~~le~~---l~~~~~a~vi~-ep~~~~~G~~~~~~~~ 268 (465)
+......... +......+..++ .-|+++|+++ +.+ ++++|++ +|.| .+|. +.+.+.
T Consensus 158 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~-~~~~v~i~~p~n-ptG~-~~~~~~ 227 (444)
T 3if2_A 158 YSDVHVEGQH-------FAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEG-RIGAICCSRPTN-PTGN-VLTDEE 227 (444)
T ss_dssp GTTCCSSSCC-------EEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTT-CEEEEEEESSCT-TTCC-CCCHHH
T ss_pred hhhcccccch-------hhccCceEEecccccccCccccCCCHHHHHHHHHhcCC-CceEEEeCCCCC-CCCC-cCCHHH
Confidence 8754321100 001111122222 1289999998 554 4555555 5654 4444 458888
Q ss_pred HHHHHHHHHHhCCEEEEeccccCCCCCCccc---cccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCCcCCC
Q 012363 269 LQFLRDACDDAGALLVFDEVQCGLGRTGYLW---AHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTF 345 (465)
Q Consensus 269 l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~---~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~ 345 (465)
+++|.++|++||++||+||+|..+ ..+..+ .....+...++.++||...+|+|+||+++++++++.+....+..++
T Consensus 228 l~~i~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~l~~~~~~~~~~~~~ 306 (444)
T 3if2_A 228 MAHLAEIAKRYDIPLIIDNAYGMP-FPNIIYSDAHLNWDNNTILCFSLSKIGLPGMRTGIIVADAKVIEAVSAMNAVVNL 306 (444)
T ss_dssp HHHHHHHHHHTTCCEEEECTTCTT-TTCCBCSCCCCCCCTTEEEEEESTTTTCGGGCCEEEECCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCEEEEECCCCCc-ccccccccccccCCCCEEEEechhhccCCCCceEEEEECHHHHHHHHHHHHhccC
Confidence 999999999999999999999743 111111 1122345566779999855689999999999999888755555667
Q ss_pred CChHHHHHHHHHHHHHhcCc-----hHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec---CChHHHHHHH
Q 012363 346 AGSPLVCNAAIAVLDKISNP-----AFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD---VSATPVVDAC 417 (465)
Q Consensus 346 ~~~~~~~~aa~a~L~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~---~~~~~~~~~l 417 (465)
+.++++++++.+.++..... .+.++++++.+.+.+.|.+.+...+.....+..|.++++.++ .+..++.+.|
T Consensus 307 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l 386 (444)
T 3if2_A 307 APTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPISTLDLYERL 386 (444)
T ss_dssp SCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCSSCHHHHHHHH
T ss_pred CCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCCCCHHHHHHHH
Confidence 88889999988888743211 134445555566666665544333222223456888888884 3577899999
Q ss_pred HHCCceEeecCC---C----------CEEEEecCCCCcHHHHHHHHHHHHHHHHHhhhc
Q 012363 418 RDSGLLVLTAGK---G----------NVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 418 ~~~Gv~v~~~~~---~----------~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
.++||.+.++.. + +++||+++. ++++|++++++|.++++++.++
T Consensus 387 ~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~~~~~~ 443 (444)
T 3if2_A 387 KAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA--DEQTLIDGIKVIGEVVRELYDN 443 (444)
T ss_dssp HHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS--CHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHCCeEEecchhhcCCCCCcccccCCCeEEEEEeC--CHHHHHHHHHHHHHHHHHHHcc
Confidence 999999987531 1 579999886 9999999999999999887754
No 116
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.96 E-value=9.4e-28 Score=241.37 Aligned_cols=332 Identities=13% Similarity=0.106 Sum_probs=227.0
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccc----cCCCC---CHHHHHHHHHHHhhcCC---CeEEecCCHH
Q 012363 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV----SNMYY---SIPQIELAKRLVACSFA---DRVFFSNTGT 165 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~----~~~~~---~~~~~~la~~l~~~~~~---~~v~~~~sG~ 165 (465)
+|+++++|..+.. ++.+|.|++++.+++++.... ...+. .....+++++|+++++. ++|++++||+
T Consensus 25 ~g~~~i~l~~~~~----~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t 100 (420)
T 1t3i_A 25 NGHPLVYLDNAAT----SQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNAT 100 (420)
T ss_dssp TTEECEECBTTTC----CCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHH
T ss_pred CCCceEEecCCcc----CCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChH
Confidence 6777888877654 468899999999998763211 11121 23467899999999885 8999999999
Q ss_pred HHHHHHHHHHHHH-hhhcCCCCCCCCceEEEEcCCcccCcccc---c-cccCCCCcCCCCCCCCCCceEeeCCCHHHHHh
Q 012363 166 EANEAAIKFARKF-QRHSNPDSKEPATEFVSFTNSFHGRTMGA---L-ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRK 240 (465)
Q Consensus 166 eA~~~al~~a~~~-t~~~~~~~~~~~~~ii~~~~~yhg~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 240 (465)
+|+..+++.++.. . .++++|++.+++||+..... . ..+..... .+...+.. .|+++|++
T Consensus 101 ~a~~~~~~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~----v~~~~~~~----~d~~~l~~ 164 (420)
T 1t3i_A 101 EAINLVAYSWGMNNL--------KAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKF----VQLDEQES----FDLEHFKT 164 (420)
T ss_dssp HHHHHHHHHTHHHHC--------CTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEE----ECBCTTSS----BCHHHHHH
T ss_pred HHHHHHHHHhhhccc--------CCCCEEEECcchhHHHHHHHHHHHHhcCcEEEE----eccCCCCC----cCHHHHHH
Confidence 9999999987321 1 15789999999999964211 1 11111110 11111110 38999999
Q ss_pred hcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEe--cccCC
Q 012363 241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL--AKPLA 318 (465)
Q Consensus 241 ~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~--sK~lg 318 (465)
++++ ++++|++++.++++|.+.+ +++|.++|++||++||+||+|+. |... +....++ +|++++ +|.++
T Consensus 165 ~l~~-~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~-~~~~--~~~~~~~--~di~~~s~sK~~~ 234 (420)
T 1t3i_A 165 LLSE-KTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQSA-PHYP--LDVQLID--CDWLVASGHKMCA 234 (420)
T ss_dssp HCCT-TEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTTT-TTSC--CCHHHHT--CSEEEEEGGGTTS
T ss_pred hhCC-CceEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEEhhhcc-CCcc--CchhhcC--CCEEEEehhhhcC
Confidence 9975 5788888888777787765 89999999999999999999973 3221 1222233 677755 59665
Q ss_pred CccceeeEEeCHHHHhhccCCCCcC--------------------CCCChHHHHHHHHH-HHHHhcC---chHHHHHHHH
Q 012363 319 GGLPIGAALVTEKVASAINYGDHGS--------------------TFAGSPLVCNAAIA-VLDKISN---PAFLASVSKK 374 (465)
Q Consensus 319 ~G~~iG~v~~~~~i~~~~~~~~~~~--------------------t~~~~~~~~~aa~a-~L~~~~~---~~~~~~~~~~ 374 (465)
+ ..+|++++++++++.+.+..... +.+.+++.+.++++ +++.+.+ +.+.++.+++
T Consensus 235 ~-~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~ 313 (420)
T 1t3i_A 235 P-TGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVEL 313 (420)
T ss_dssp C-TTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred C-CceEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4 23899999999998886543221 23455566665554 6776543 3445555555
Q ss_pred HHHHHHHHHHHHHcCCCceeeec------cceEEEEEec-CChHHHHHHHHHCCceEeec-----------CCCCEEEEe
Q 012363 375 GHYFKETLKQKLARNPHVKDVRG------LGLIIGIEFD-VSATPVVDACRDSGLLVLTA-----------GKGNVVRLV 436 (465)
Q Consensus 375 ~~~l~~~l~~~~~~~~~~~~~~~------~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~-----------~~~~~lRi~ 436 (465)
.+++.+.|+ +.+.+..... .|.++.+.++ .+..++.+.|.++||.+.++ +..+++|++
T Consensus 314 ~~~l~~~L~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~g~~~~iRis 389 (420)
T 1t3i_A 314 THYLWQGLG----QIPQLRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARAS 389 (420)
T ss_dssp HHHHHHHHH----TCTTEEEESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEE
T ss_pred HHHHHHHHH----hCCCeEEeCCCccccccCCEEEEEECCCCHHHHHHHHHHCCeEEeeccccchHHHHhcCCCCeEEEe
Confidence 555555554 4433332222 3778888774 35678899999999999876 213789999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012363 437 PPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 437 ~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
++..++++++++++++|+++++.+++
T Consensus 390 ~~~~~~~~~i~~~~~~l~~~~~~~~~ 415 (420)
T 1t3i_A 390 LYFYNTKEEIDLFLQSLQATIRFFSD 415 (420)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHTC-
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99889999999999999999987753
No 117
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.96 E-value=9.3e-28 Score=238.65 Aligned_cols=327 Identities=13% Similarity=0.068 Sum_probs=227.7
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCC---CeEEecCCHHHHHHHHHHH
Q 012363 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA---DRVFFSNTGTEANEAAIKF 174 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~---~~v~~~~sG~eA~~~al~~ 174 (465)
+.|+|+.+ .++.+|++.+|+.+++.. ++ .....+...++++++++.++. +++++++||++|+..+++.
T Consensus 20 ~~~l~~~~------~~~~~~~v~~a~~~~~~~--~~-~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~ 90 (386)
T 2dr1_A 20 KYKLFTAG------PVACFPEVLEIMKVQMFS--HR-SKEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRN 90 (386)
T ss_dssp CSEECCSS------SCCCCHHHHHHTTSCCCC--TT-SHHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHH
T ss_pred cceeecCC------CcCCcHHHHHHHhccccc--cc-CHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHH
Confidence 45777643 245788999888776542 11 111134578899999998873 5699999999999999997
Q ss_pred HHHHhhhcCCCCCCCCceEEEEcCCccc--CccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC-CCCeEEEE
Q 012363 175 ARKFQRHSNPDSKEPATEFVSFTNSFHG--RTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ-PGKTAAVF 251 (465)
Q Consensus 175 a~~~t~~~~~~~~~~~~~ii~~~~~yhg--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~-~~~~a~vi 251 (465)
+. .++++|++.+|+||+ +...+...+..... .+...+. ..|+++|+++++ ..++++|+
T Consensus 91 l~-----------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~----v~~~~~~----~~d~~~l~~~l~~~~~~~~v~ 151 (386)
T 2dr1_A 91 GV-----------SKGGKVLVTIIGAFGKRYKEVVESNGRKAVV----LEYEPGK----AVKPEDLDDALRKNPDVEAVT 151 (386)
T ss_dssp HS-----------CTTCEEEEEESSHHHHHHHHHHHHTTCEEEE----EECCTTC----CCCHHHHHHHHHHCTTCCEEE
T ss_pred hh-----------cCCCeEEEEcCCchhHHHHHHHHHhCCceEE----EecCCCC----CCCHHHHHHHHhcCCCCcEEE
Confidence 64 158899999999998 43222222211110 0111110 148999999994 23567777
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEe--cccCCCccceeeEEeC
Q 012363 252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL--AKPLAGGLPIGAALVT 329 (465)
Q Consensus 252 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~--sK~lg~G~~iG~v~~~ 329 (465)
+++.++++|.+.+ +++|.++|++||++||+||+|+.+ ... ..... ..+|++++ +|+++++.++|+++++
T Consensus 152 ~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~~-~~~--~~~~~--~~~di~~~s~sK~~~~~~g~G~~~~~ 222 (386)
T 2dr1_A 152 ITYNETSTGVLNP----LPELAKVAKEHDKLVFVDAVSAMG-GAD--IKFDK--WGLDVVFSSSQKAFGVPPGLAIGAFS 222 (386)
T ss_dssp EESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTBT-TBC--CCTTT--TTCSEEEEETTSTTCCCSSCEEEEEC
T ss_pred EEeecCCcchhCC----HHHHHHHHHHcCCeEEEEcccccc-Ccc--ccccc--cCCcEEEEeccccccCCCceEEEEEC
Confidence 7776677777655 899999999999999999998743 221 12222 23577755 5999976569999999
Q ss_pred HHHHhhccCC------------------CCcCCCCChHHHHHHHHHHHHHhcCc----hHHHHHHHHHHHHHHHHHHHHH
Q 012363 330 EKVASAINYG------------------DHGSTFAGSPLVCNAAIAVLDKISNP----AFLASVSKKGHYFKETLKQKLA 387 (465)
Q Consensus 330 ~~i~~~~~~~------------------~~~~t~~~~~~~~~aa~a~L~~~~~~----~~~~~~~~~~~~l~~~l~~~~~ 387 (465)
+++++.+.+. ....+++.++++++++.++|+.+.+. +..++++++.+++.+.|+++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-- 300 (386)
T 2dr1_A 223 ERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREI-- 300 (386)
T ss_dssp HHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc--
Confidence 9988776421 12345677889999999999876433 56677777777777777664
Q ss_pred cCCCceee-eccceEEEEEec--CChHHHHHHHHHCCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012363 388 RNPHVKDV-RGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 388 ~~~~~~~~-~~~g~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
.+...... ...+.++++.++ .+..++.+.|.++||.+.++. .++++|++++..++++++++++++|+++++++.
T Consensus 301 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 380 (386)
T 2dr1_A 301 GLDILAEPGHESPTITAVLTPPGIKGDEVYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVINELK 380 (386)
T ss_dssp TCCBSSCTTCBCSSEEEEECCTTCCHHHHHHHHHHTTEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeeCcCccccCCceEEEEcCCCCCHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 22211110 114778888874 357789999999999998863 237899999988999999999999999998875
Q ss_pred hc
Q 012363 462 SN 463 (465)
Q Consensus 462 ~~ 463 (465)
.+
T Consensus 381 ~~ 382 (386)
T 2dr1_A 381 KQ 382 (386)
T ss_dssp HH
T ss_pred CC
Confidence 43
No 118
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.96 E-value=2.1e-27 Score=231.87 Aligned_cols=314 Identities=15% Similarity=0.091 Sum_probs=216.8
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHH
Q 012363 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIK 173 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~ 173 (465)
+.+++|||.+|. +++| .+|.|.+++.+.+... ..|+++...+++++++++++ .++|++|+|+++++..+++
T Consensus 14 ~~~~~i~l~~n~--~~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~ 86 (337)
T 3p1t_A 14 AAAQAVCLAFNE--NPEA-VEPRVQAAIAAAAARI----NRYPFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISA 86 (337)
T ss_dssp CCCCCEECSSCC--CCSC-CCHHHHHHHHHHGGGT----TSCCTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHH
T ss_pred CCCCceEeeCCC--CCCC-CCHHHHHHHHHhhhhh----ccCCCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHH
Confidence 456789999885 4677 7799999999887653 23455668899999999987 5699999999999999888
Q ss_pred HHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEc
Q 012363 174 FARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE 253 (465)
Q Consensus 174 ~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~e 253 (465)
.+ ++++|++.+|+|+++...+...+..... .+...+.. .|+++|+++. +...++++.
T Consensus 87 ~~-------------~gd~vl~~~p~~~~~~~~~~~~g~~~~~----v~~~~~~~----~d~~~l~~~~--~~~~v~i~~ 143 (337)
T 3p1t_A 87 EF-------------SSMRFVTAWPGFDGYRARIAVSGLRHFE----IGLTDDLL----LDPNDLAQVS--RDDCVVLAN 143 (337)
T ss_dssp HS-------------TTSEEEEESSSCSHHHHHHTTSCCEEEE----ECBCTTSS----BCHHHHTTCC--TTEEEEEES
T ss_pred hc-------------CCCeEEEeCCCcHHHHHHHHHcCCEEEE----ecCCCCCC----CCHHHHHhhc--CCCEEEEeC
Confidence 65 1789999999999877554333221110 01111111 2788988873 234455555
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCC-CccceeeEEeCHHH
Q 012363 254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAALVTEKV 332 (465)
Q Consensus 254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i 332 (465)
|.|+ +|.+.+ ++++.++|+++++ +|+||+|.+|+..+.. .....+....+.++||.++ .|+|+||+++++++
T Consensus 144 p~np-tG~~~~----~~~l~~l~~~~~~-~ivDea~~~~~~~~~~-~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~ 216 (337)
T 3p1t_A 144 PSNP-TGQALS----AGELDQLRQRAGK-LLIDETYVDYSSFRAR-GLAYGENELVFRSFSKSYGLAGLRLGALFGPSEL 216 (337)
T ss_dssp SCTT-TCCCCC----HHHHHHHHHHCSE-EEEECTTGGGSSCSSS-CCCCBTTEEEEEESSSTTCCTTTCCEEEECCHHH
T ss_pred CCCC-CCCCCC----HHHHHHHHHhCCc-EEEECCChhhcccccc-ccccCCCEEEEeeCchhccCcchheEEEEeCHHH
Confidence 5554 455554 6678888889887 5669999987644432 1122233344568999998 69999999999999
Q ss_pred HhhccCCCCcCCCCChHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecCChH
Q 012363 333 ASAINYGDHGSTFAGSPLVCNAAIAVLDKIS-NPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSAT 411 (465)
Q Consensus 333 ~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~ 411 (465)
++.+... ..+++.+++++.++.++|+... .++..+++.++.+++.+.|++ ++ +...++.|.++++... +..
T Consensus 217 ~~~l~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~----~g-~~~~~~~~~~~~~~~~-~~~ 288 (337)
T 3p1t_A 217 IAAMKRK--QWFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRG----LG-YRVASSEANFVLVENA-AGE 288 (337)
T ss_dssp HHHHHTT--SCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH----TT-CCBCCCSSSEEEEECT-TTH
T ss_pred HHHHHhh--cCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH----Cc-CEECCCCCeEEEEEcC-CHH
Confidence 9988743 3456788899988888886321 123344444444555544444 33 2334566788887763 346
Q ss_pred HHHHHHHHCCceEeecCC---CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012363 412 PVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 412 ~~~~~l~~~Gv~v~~~~~---~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
.+.+.|.++||.+.++.. ++++|++++ +++++++++++|++++
T Consensus 289 ~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~~~~l~~al~~~~ 334 (337)
T 3p1t_A 289 RTLRFLRERGIQVKDAGQFGLHHHIRISIG---REEDNDRLLAALAEYS 334 (337)
T ss_dssp HHHHHHHHTTEECEEGGGGTCCSEEEEECC---CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCeEEEECccCCCCCeEEEecC---CHHHHHHHHHHHHHHh
Confidence 788889999999988642 478999865 7899999999988764
No 119
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.96 E-value=1.5e-27 Score=240.38 Aligned_cols=332 Identities=16% Similarity=0.130 Sum_probs=223.4
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHh--hcccccCC-------CCCHHHHHHHHHHHhhcC--CCeEEecCCH
Q 012363 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQAN--VLTHVSNM-------YYSIPQIELAKRLVACSF--ADRVFFSNTG 164 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~--~~~~~~~~-------~~~~~~~~la~~l~~~~~--~~~v~~~~sG 164 (465)
++.-|||+.++ |+.+|.|++++.+++. ........ ...+...++++++++.++ .++|++++||
T Consensus 21 ~~~iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg 94 (423)
T 3lvm_A 21 KLPIYLDYSAT------TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGA 94 (423)
T ss_dssp CSSEECBTTTC------CCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSH
T ss_pred CCCEeecCCCc------CCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCh
Confidence 55678887654 4688999999999877 32111100 112336789999999988 4599999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccc--cCCCCcCCCCCCCCCCceEeeCCCHHHHHhhc
Q 012363 165 TEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL--TSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI 242 (465)
Q Consensus 165 ~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l 242 (465)
++|++.+++.+..+.. .++++|++.+++|++.......+ .+.... +.+...+.. .|+++|++++
T Consensus 95 t~a~~~a~~~l~~~~~-------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~---~v~~~~~~~----~d~~~l~~~i 160 (423)
T 3lvm_A 95 TESDNLAIKGAANFYQ-------KKGKHIITSKTEHKAVLDTCRQLEREGFEVT---YLAPQRNGI----IDLKELEAAM 160 (423)
T ss_dssp HHHHHHHHHHHHHHHT-------TTCCEEEEETTSCHHHHHHHHHHHHTTCEEE---EECCCTTSC----CCHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhc-------cCCCEEEECCccchHHHHHHHHHHHcCCEEE---EeccCCCCc----cCHHHHHHhc
Confidence 9999999997764332 14889999999999876544322 111110 011111111 1899999999
Q ss_pred CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCc
Q 012363 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGG 320 (465)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G 320 (465)
++ ++++|+++++++++|.+.+ +++|+++|++||++||+||+|+. +.. ........+|++++| |.++ +
T Consensus 161 ~~-~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~-~~~----~~~~~~~~~di~~~s~sK~~g-~ 229 (423)
T 3lvm_A 161 RD-DTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQSV-GKL----PIDLSQLKVDLMSFSGHKIYG-P 229 (423)
T ss_dssp CT-TEEEEECCSBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTT-TTS----CCCTTTSCCSEEEEESTTTTS-C
T ss_pred CC-CcEEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEEhhhhc-CCC----CcChhhcCCCEEEechHHhcC-C
Confidence 75 6788888888877887765 89999999999999999999863 221 122223347777655 9654 3
Q ss_pred cceeeEEeCHHHHhhccCCCC-------cCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCce
Q 012363 321 LPIGAALVTEKVASAINYGDH-------GSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVK 393 (465)
Q Consensus 321 ~~iG~v~~~~~i~~~~~~~~~-------~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 393 (465)
.++|++++++++++.+.+... ..+.+.++..++++.++++.+.+. .+++.+....+++.|.+.+.+++.+.
T Consensus 230 ~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~ 307 (423)
T 3lvm_A 230 KGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEE--MATEMERLRGLRNRLWNGIKDIEEVY 307 (423)
T ss_dssp SSCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSTTEE
T ss_pred CCeEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 459999999887777765322 223455778888888888765431 34444444444455555555555433
Q ss_pred eeecc----ceEEEEEec-CChHHHHHHHHHCCceEeecCC----------------------CCEEEEecCCCCcHHHH
Q 012363 394 DVRGL----GLIIGIEFD-VSATPVVDACRDSGLLVLTAGK----------------------GNVVRLVPPLIISEQEL 446 (465)
Q Consensus 394 ~~~~~----g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~~----------------------~~~lRi~~~~~~t~e~i 446 (465)
..... +.++.+.+. .+..++.+.|.+ |.+.++.. ++++|++++..++++++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i 385 (423)
T 3lvm_A 308 LNGDLEHGAPNILNVSFNYVEGESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEI 385 (423)
T ss_dssp EESCSTTBCTTEEEEEETTSCHHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHH
T ss_pred EeCCccccCCCeEEEEeCCCCHHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHH
Confidence 33222 356666663 456777877766 66655321 27899999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 012363 447 DQAVEILCKTLPVLDS 462 (465)
Q Consensus 447 ~~~l~~l~~~l~~~~~ 462 (465)
++++++|+++++++++
T Consensus 386 ~~~~~~l~~~~~~~~~ 401 (423)
T 3lvm_A 386 DYTIELVRKSIGRLRD 401 (423)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999987754
No 120
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.96 E-value=5.5e-28 Score=243.67 Aligned_cols=329 Identities=13% Similarity=0.042 Sum_probs=212.8
Q ss_pred CEEEecccCcccccCCCCC--HHHHHHHHHHHhhcc-cc--cCCCCCHHHHHHHHHHHhhcC----CC--eEEecCCHHH
Q 012363 98 REYLDLSSGIAVNALGHGD--ADWIKAVVDQANVLT-HV--SNMYYSIPQIELAKRLVACSF----AD--RVFFSNTGTE 166 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~--p~v~~a~~~~~~~~~-~~--~~~~~~~~~~~la~~l~~~~~----~~--~v~~~~sG~e 166 (465)
..+|||..|.+..+.|+.+ |.|++|+.++++... +. ...+..+.++++++++....+ ++ +|++|+||++
T Consensus 49 ~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~ 128 (420)
T 4f4e_A 49 PTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTG 128 (420)
T ss_dssp SSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred CCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHH
Confidence 3578999987666677765 899999999887621 11 111223446666666655443 56 8999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC----C---CHHHHH
Q 012363 167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY----G---NIEATR 239 (465)
Q Consensus 167 A~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---d~~~le 239 (465)
|+..+++++.... ++++|++.+|+|+++...+...+... ..+|. + |+++|+
T Consensus 129 al~~~~~~~~~~~---------~gd~Vlv~~p~~~~~~~~~~~~g~~~-------------~~v~~~~~~~~~~d~~~l~ 186 (420)
T 4f4e_A 129 ALKIGADFLRTLN---------PKAKVAISDPSWENHRALFDMAGFEV-------------VAYPYYDAKTNGVNFDGML 186 (420)
T ss_dssp HHHHHHHHHHHHC---------TTCCEEEEESCCHHHHHHHHHTTCCE-------------EEEECEETTTTEECHHHHH
T ss_pred HHHHHHHHHHHhC---------CCCEEEEeCCCcHhHHHHHHHcCCeE-------------EEeeeeccccCccCHHHHH
Confidence 9999987554322 68899999999999876554443222 22222 1 899999
Q ss_pred hhcCC--CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc--ccccc----ccCCcccEE
Q 012363 240 KLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY--LWAHE----HYGIFPDIM 311 (465)
Q Consensus 240 ~~l~~--~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~--~~~~~----~~~~~pdi~ 311 (465)
+.++. .++++++++..++++|. .++.+.+++|.++|++||+++|+||+|.+|++.+. ..... ..+....+.
T Consensus 187 ~~l~~~~~~~~~v~i~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 265 (420)
T 4f4e_A 187 AALNGYEPGTIVVLHACCHNPTGV-DLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSS 265 (420)
T ss_dssp HHHTTCCTTCEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEE
T ss_pred HHHHhCCCCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEE
Confidence 99972 34566666554444554 45888999999999999999999999999876541 11111 123333445
Q ss_pred EecccCC-CccceeeEEe---CHHHHhhc----cCCCCcCCCCChHHHHHHHHHHHHHhc--------CchHHHHHHHHH
Q 012363 312 TLAKPLA-GGLPIGAALV---TEKVASAI----NYGDHGSTFAGSPLVCNAAIAVLDKIS--------NPAFLASVSKKG 375 (465)
Q Consensus 312 t~sK~lg-~G~~iG~v~~---~~~i~~~~----~~~~~~~t~~~~~~~~~aa~a~L~~~~--------~~~~~~~~~~~~ 375 (465)
+|||.++ .|+|+||+++ ++++++.+ .......+.+.+++++.++.++|+... -+++.++++++.
T Consensus 266 S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 345 (420)
T 4f4e_A 266 SFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMR 345 (420)
T ss_dssp ECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999 5999999864 45655432 211113344567778887777776321 023344444455
Q ss_pred HHHHHHHHHHHHcCCCceeeeccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHH
Q 012363 376 HYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 376 ~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~ 455 (465)
+.+.+.|+++....+.....+..|.+.++.+ +...+.+.|.++||++.+++ |++++ ..+++++++++++|++
T Consensus 346 ~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~l~~~gI~v~~~~-----Ris~~-~~~~~~i~~~~~~l~~ 417 (420)
T 4f4e_A 346 NGLVERLKAAGIERDFSFINAQRGMFSYSGL--TSAQVDRLREEFGIYAVSTG-----RICVA-ALNTRNLDVVANAIAA 417 (420)
T ss_dssp HHHHHHHHHTTCSSCCTHHHHSCSSEEECCC--CHHHHHHHHHHHCEECCTTS-----EEEGG-GCCTTTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCceeECCCccEEEEeCC--CHHHHHHHHHhCCEEecCCC-----eEEEe-cCCHHHHHHHHHHHHH
Confidence 5555555443211122222234566666554 45566677778999998753 88875 3477789999999998
Q ss_pred HH
Q 012363 456 TL 457 (465)
Q Consensus 456 ~l 457 (465)
++
T Consensus 418 ~l 419 (420)
T 4f4e_A 418 VL 419 (420)
T ss_dssp HH
T ss_pred Hh
Confidence 76
No 121
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.96 E-value=3.4e-27 Score=234.32 Aligned_cols=328 Identities=14% Similarity=0.125 Sum_probs=221.2
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhcc-cccCCC-----CCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHH
Q 012363 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-HVSNMY-----YSIPQIELAKRLVACSF--ADRVFFSNTGTEANEA 170 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~-~~~~~~-----~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~ 170 (465)
.|||+.++ |+.+|+|++|+.+++.+.. .....+ ......+++++++++++ .++|++++||++|+..
T Consensus 3 ~yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~ 76 (384)
T 1eg5_A 3 VYFDNNAT------TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINW 76 (384)
T ss_dssp EECBTTTC------CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHH
T ss_pred EEEecCcc------CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHH
Confidence 57887664 4689999999999987521 100000 12336789999999988 4699999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccc--cccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeE
Q 012363 171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL--ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA 248 (465)
Q Consensus 171 al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a 248 (465)
+++.+..... .++++|++.+++||+...... ...+..... .+...+. ..|+++|++++++ +++
T Consensus 77 ~~~~~~~~~~-------~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~~----~~d~~~l~~~i~~-~~~ 141 (384)
T 1eg5_A 77 ILKTVAETFE-------KRKRTIITTPIEHKAVLETMKYLSMKGFKVKY---VPVDSRG----VVKLEELEKLVDE-DTF 141 (384)
T ss_dssp HHHHHHHHTT-------TTCCEEEECTTSCHHHHHHHHHHHHTTCEEEE---CCBCTTS----CBCHHHHHHHCCT-TEE
T ss_pred HHHhhhhhcc-------CCCCEEEECCCCchHHHHHHHHHHhcCCEEEE---EccCCCC----ccCHHHHHHHhCC-CCe
Confidence 9998763210 157899999999998754432 111211111 1111111 1389999999975 577
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhC--CEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCC-ccce
Q 012363 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAG--ALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAG-GLPI 323 (465)
Q Consensus 249 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g--~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~-G~~i 323 (465)
+|++++.++++|.+.+ +++|.++|++|| ++||+||+|+ +|... .... ...+|++++| |.++. | +
T Consensus 142 ~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~~~~~--~~~~--~~~~di~~~s~sK~~g~~G--~ 210 (384)
T 1eg5_A 142 LVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKIP--FSLE--KLEVDYASFSAHKFHGPKG--V 210 (384)
T ss_dssp EEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTSC--CCCT--TTCCSEEEEEGGGGTSCTT--C
T ss_pred EEEEECCCCCcccccC----HHHHHHHHHhcCCceEEEEEhhhh-cCCcc--cCch--hcCCCEEEecHHHhcCCCc--e
Confidence 7777777777777665 899999999999 9999999997 64321 1222 2246777655 98764 5 7
Q ss_pred eeEEeCHHH--HhhccCCC---CcCCCCChHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHcCCCceeee
Q 012363 324 GAALVTEKV--ASAINYGD---HGSTFAGSPLVCNAAIAVLDKISN--PAFLASVSKKGHYFKETLKQKLARNPHVKDVR 396 (465)
Q Consensus 324 G~v~~~~~i--~~~~~~~~---~~~t~~~~~~~~~aa~a~L~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 396 (465)
|++++++++ ...+.... ...+++.++++++++.++|+.+.+ ++..++++++.+++.+.|++ .+ +....
T Consensus 211 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g-~~~~~ 285 (384)
T 1eg5_A 211 GITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN----LG-AHIIT 285 (384)
T ss_dssp EEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT----TT-CEECS
T ss_pred EEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC----CC-eEEeC
Confidence 999999876 33332211 124567889999999999987532 34455555666666655544 22 22111
Q ss_pred ----ccceEEEEEec-CChHHHHHHHHHCCceEeecCC----------------------CCEEEEecCCCCcHHHHHHH
Q 012363 397 ----GLGLIIGIEFD-VSATPVVDACRDSGLLVLTAGK----------------------GNVVRLVPPLIISEQELDQA 449 (465)
Q Consensus 397 ----~~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~~----------------------~~~lRi~~~~~~t~e~i~~~ 449 (465)
..+.++++.+. .+..++.+.|.++||.+.++.. .+++||+++..+++++++++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~ 365 (384)
T 1eg5_A 286 PLEISLPNTLSVSFPNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYF 365 (384)
T ss_dssp CTTSBCTTEEEEECTTCCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHH
T ss_pred CcccCCCCEEEEEeCCCCHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHH
Confidence 13456666663 4577899999999999987420 26899998888899999999
Q ss_pred HHHHHHHHHHhhhc
Q 012363 450 VEILCKTLPVLDSN 463 (465)
Q Consensus 450 l~~l~~~l~~~~~~ 463 (465)
+++|+++++++++.
T Consensus 366 ~~~l~~~~~~~~~~ 379 (384)
T 1eg5_A 366 LKKIEEILSFLDLT 379 (384)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887654
No 122
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.96 E-value=1.1e-26 Score=233.43 Aligned_cols=331 Identities=18% Similarity=0.107 Sum_probs=232.1
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhc-ccccC--C---CCCHHHHHHHHHHHhhcC--CCeEEecCCHHHH
Q 012363 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL-THVSN--M---YYSIPQIELAKRLVACSF--ADRVFFSNTGTEA 167 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~-~~~~~--~---~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA 167 (465)
+|..|+|+.+ .|+.+|.|.+++.+++... ..... . ...+...+++++++++++ .++|++++||+++
T Consensus 27 ~~~~yld~~~------~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 100 (416)
T 1qz9_A 27 EGVIYLDGNS------LGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSIN 100 (416)
T ss_dssp TTCEECCTTT------SCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHH
T ss_pred CCeEeecCCC------cCCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHH
Confidence 5788999754 3578899999999998752 11110 0 112446789999999998 4689999999999
Q ss_pred HHHHHHHHHHHh---hhcCCCCCCCCceEEEEcCCcccCcccccc-ccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC
Q 012363 168 NEAAIKFARKFQ---RHSNPDSKEPATEFVSFTNSFHGRTMGALA-LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ 243 (465)
Q Consensus 168 ~~~al~~a~~~t---~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~ 243 (465)
+..+++.++.+. . +++++|+.++.+|+....... +.... .....+..+|. +++|+++++
T Consensus 101 l~~al~~~~~~~~~~~--------~gd~vii~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~v~~--~~~l~~~i~ 163 (416)
T 1qz9_A 101 LFKVLSAALRVQATRS--------PERRVIVTETSNFPTDLYIAEGLADML-------QQGYTLRLVDS--PEELPQAID 163 (416)
T ss_dssp HHHHHHHHHHHHHHHS--------TTCCEEEEETTSCHHHHHHHHHHHHHH-------CSSCEEEEESS--GGGHHHHCS
T ss_pred HHHHHHhhcccccccC--------CCCcEEEEcCCCCCchHHHHHHHHHHh-------cCCceEEEeCc--HHHHHHHhC
Confidence 999998775331 1 466778888878875433221 10000 00112344544 788999997
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEe--cccCCCcc
Q 012363 244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL--AKPLAGGL 321 (465)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~--sK~lg~G~ 321 (465)
+ ++++|++++.++++|.+.+ +++|.++|++||+++|+||+|+ +|... .....+ .+|++++ +|++++|.
T Consensus 164 ~-~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~~--~~d~~~~s~~K~l~~g~ 233 (416)
T 1qz9_A 164 Q-DTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHS-AGAVP--VDLHQA--GADYAIGCTYKYLNGGP 233 (416)
T ss_dssp T-TEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCHHHH--TCSEEEECSSSTTCCCT
T ss_pred C-CceEEEEeccccCcccccC----HHHHHHHHHHcCCEEEEEcccc-ccCcC--CChhhc--CCCEEEecCcccCCCCC
Confidence 5 6788888888877887765 8999999999999999999997 44332 122222 3677765 59998888
Q ss_pred ce-eeEEeCHHHHhhccCCCCc-----------------------CCCCChHHHHHHHHHHHHHhcC---chHHHHHHHH
Q 012363 322 PI-GAALVTEKVASAINYGDHG-----------------------STFAGSPLVCNAAIAVLDKISN---PAFLASVSKK 374 (465)
Q Consensus 322 ~i-G~v~~~~~i~~~~~~~~~~-----------------------~t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~ 374 (465)
++ |++++++++++.+.+...+ ...+.++.+++++.++|+.+.+ +++.++++++
T Consensus 234 ~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~ 313 (416)
T 1qz9_A 234 GSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLAL 313 (416)
T ss_dssp TCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 88 9999999987776542111 1224678888888889987753 3567778888
Q ss_pred HHHHHHHHHHHHH--cCCCceee--eccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecC-CCCcHHHHHHH
Q 012363 375 GHYFKETLKQKLA--RNPHVKDV--RGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPP-LIISEQELDQA 449 (465)
Q Consensus 375 ~~~l~~~l~~~~~--~~~~~~~~--~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~-~~~t~e~i~~~ 449 (465)
.+++.+.|.+++. .+...... ...+.++++.+. +..++.+.|.++||.+...+. +++|++++ +.+++++++++
T Consensus 314 ~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~gi~~~~~~~-~~lRis~~~~~~t~~~i~~~ 391 (416)
T 1qz9_A 314 TDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP-EGYAVIQALIDRGVIGDYREP-RIMRFGFTPLYTTFTEVWDA 391 (416)
T ss_dssp HHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT-THHHHHHHHHTTTEECEEETT-TEEEEECCTTTCCHHHHHHH
T ss_pred HHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecC-CHHHHHHHHHhCCcEeccCCC-CeEEEeCcccCCCHHHHHHH
Confidence 8888888876532 22211111 023667788774 367899999999999876544 78999987 58899999999
Q ss_pred HHHHHHHHHHhh
Q 012363 450 VEILCKTLPVLD 461 (465)
Q Consensus 450 l~~l~~~l~~~~ 461 (465)
+++|++++++..
T Consensus 392 ~~~l~~~~~~~~ 403 (416)
T 1qz9_A 392 VQILGEILDRKT 403 (416)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHhccc
Confidence 999999987643
No 123
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.96 E-value=4.4e-28 Score=251.25 Aligned_cols=336 Identities=12% Similarity=0.013 Sum_probs=214.1
Q ss_pred ccCCCCCHHHHHHHHHHHhhcccc-cCCCCCHHHHHHHHHHHhhc-C------CCeEEecCCHHHHHHHHHHHHHH--Hh
Q 012363 110 NALGHGDADWIKAVVDQANVLTHV-SNMYYSIPQIELAKRLVACS-F------ADRVFFSNTGTEANEAAIKFARK--FQ 179 (465)
Q Consensus 110 ~~lGh~~p~v~~a~~~~~~~~~~~-~~~~~~~~~~~la~~l~~~~-~------~~~v~~~~sG~eA~~~al~~a~~--~t 179 (465)
...++.+|++++++.+++....++ +..+....++++++.+.+.+ + .++|++|+||++|+..+++.+.. ..
T Consensus 111 g~~~~~~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l~ 190 (533)
T 3f6t_A 111 TELGLNRDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLL 190 (533)
T ss_dssp HTTCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSS
T ss_pred CCCCcCCcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhcc
Confidence 345567889998888887653332 22233445777777776551 2 37999999999999999986322 12
Q ss_pred hhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEE-EcccCCC
Q 012363 180 RHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVF-VEPIQGE 258 (465)
Q Consensus 180 ~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi-~ep~~~~ 258 (465)
.+++.|++.+|+|+++.......+..............+... |+++|++++++ ++++|+ +.|.|++
T Consensus 191 --------~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~----d~~~l~~~l~~-~~k~v~l~~p~NPt 257 (533)
T 3f6t_A 191 --------KKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEI----EPNEIEKLKDP-SIKALIVVNPTNPT 257 (533)
T ss_dssp --------CTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEE----CHHHHHHHSCT-TEEEEEEESSCTTT
T ss_pred --------CCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCC----CHHHHHHHhCC-CCeEEEEeCCCCCC
Confidence 158899999999998876554433221111000000011111 78999999975 455555 4565544
Q ss_pred CCcccCCHHHHHHHHHHHH-HhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCC-CccceeeEEeCHH-----
Q 012363 259 GGIYSATKEFLQFLRDACD-DAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAALVTEK----- 331 (465)
Q Consensus 259 ~G~~~~~~~~l~~l~~l~~-~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~----- 331 (465)
|. +++.+.+++|.++|+ +||+++|+||+|.+|...+........+....+.||||.+| .|+|+||++++++
T Consensus 258 -G~-~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~~ 335 (533)
T 3f6t_A 258 -SK-EFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTGWRLGVIALNEKNVFDD 335 (533)
T ss_dssp -CB-CCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGGGCEEEEEEESSCHHHH
T ss_pred -cc-ccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCcccceEEEEECcHHHHHH
Confidence 43 458888999999999 68999999999998855333222222234466779999998 5999999999876
Q ss_pred HHhhc--------------------------------cCCCCcCCCCChHHHHHH----HHHHHHH----hcCchHHHHH
Q 012363 332 VASAI--------------------------------NYGDHGSTFAGSPLVCNA----AIAVLDK----ISNPAFLASV 371 (465)
Q Consensus 332 i~~~~--------------------------------~~~~~~~t~~~~~~~~~a----a~a~L~~----~~~~~~~~~~ 371 (465)
+++.+ .......+.+.+++.+.+ +.++|.. -....+.+++
T Consensus 336 li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~ 415 (533)
T 3f6t_A 336 NIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIA 415 (533)
T ss_dssp HHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCHHHHHH
T ss_pred HHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccchHHHHHHH
Confidence 54433 233444556677777776 3444420 0123344444
Q ss_pred HHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEec------------------CChHHHHHHHH-HCCceEeecC----
Q 012363 372 SKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD------------------VSATPVVDACR-DSGLLVLTAG---- 428 (465)
Q Consensus 372 ~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~------------------~~~~~~~~~l~-~~Gv~v~~~~---- 428 (465)
++.....++.|.+.+. .+.....+..|.++++.+. .+..+++..|+ ++||++.|+.
T Consensus 416 ~~~~~~r~~~l~~~L~-~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~ 494 (533)
T 3f6t_A 416 RKLVSERYDQLHDAMQ-APKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGA 494 (533)
T ss_dssp HHHHHHHHHHHHHHHT-CCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECS
T ss_pred HHHHHHHHHHHHHhcC-CCccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcccCC
Confidence 4444444444544443 4432223445667777763 13456666665 6799998753
Q ss_pred CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012363 429 KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 429 ~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
..+++|+++. .++++++++++++|.++++++.+
T Consensus 495 ~~~~iRls~a-~~~~e~i~~~i~~L~~~l~~~~~ 527 (533)
T 3f6t_A 495 KPGELRVSQA-NLPTEDYALIGKQVLELLKEYYE 527 (533)
T ss_dssp STTEEEEESS-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEe-eCCHHHHHHHHHHHHHHHHHHHH
Confidence 1368999874 36899999999999999987653
No 124
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.96 E-value=2e-27 Score=236.32 Aligned_cols=332 Identities=15% Similarity=0.100 Sum_probs=220.8
Q ss_pred EEEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC-CCeEEecCCHHHHHH
Q 012363 91 KLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-ADRVFFSNTGTEANE 169 (465)
Q Consensus 91 ~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~v~~~~sG~eA~~ 169 (465)
.++|.+++.+.++...++..+++|..++..+.+ .++++++++.++ .+.++|++||++|++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~-------------------~~~~~~l~~~~~~~~~v~~~~sgt~a~~ 65 (379)
T 3ke3_A 5 LRQDIDPNGLLEYSVVYTDRALNHMSKAFQEVM-------------------NDLLSNLKTVYNAEAAVIIPGSGTYGME 65 (379)
T ss_dssp ---CCSTTSCCCCCSSCCTTSCCTTSHHHHHHH-------------------HHHHHHHHHHHTCSEEEEEESCHHHHHH
T ss_pred hhccCCHHHHHHHHHhccCCCCCCCCHHHHHHH-------------------HHHHHHHHHHhCCCCEEEEcCChhHHHH
Confidence 468889999999887666666778777654332 344556666666 467889999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccc-cCCCCcCCCCCCCCC----Cc-eEeeCCCHHHHHhhcC
Q 012363 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL-TSKEHYRSPFEPVMP----GV-NFVEYGNIEATRKLIQ 243 (465)
Q Consensus 170 ~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~-~~~~~~~~~~~~~~~----~~-~~~~~~d~~~le~~l~ 243 (465)
.+++.+. ++++||+++++||+.....+.. .+... ...+.+... +. ......|+++++++++
T Consensus 66 ~~~~~~~------------~gd~vi~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~ 132 (379)
T 3ke3_A 66 AVARQLT------------IDEDCLIIRNGWFSYRWTQILEKGKFAK-SSTVLTAERTEDTEAPKPFAPVDIETAVAKIK 132 (379)
T ss_dssp HHHHHHC------------TTCEEEEEECSHHHHHHHHHHHHHCCSS-EEEEEECEESSCCSSCCCEECCCHHHHHHHHH
T ss_pred HHHHhCC------------CCCeEEEEeCCchhHHHHHHHHHhCCCC-ceEEEeccccccccccCCCCCCCHHHHHHHHh
Confidence 9886432 5889999999999875432221 11100 000000000 00 0011358999999995
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccce
Q 012363 244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPI 323 (465)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~i 323 (465)
..++++|++..+++..|.+ .+.+++++|+++|++||+++|+||+++ | +..+....+++.+.+.+++|+++++.++
T Consensus 133 ~~~~~~v~~~~~~~~~G~~-~~~~~l~~i~~~~~~~~~~li~D~~~~--g--~~~~~~~~~~~d~~~~s~~K~l~~~~g~ 207 (379)
T 3ke3_A 133 EDKSAIVYAPHVETSSGII-LSEEYIKALSEAVHSVGGLLVIDCIAS--G--CVWLDMKELGIDVLISAPQKGWSSTPCA 207 (379)
T ss_dssp HHTCSEEEEESEETTTTEE-CCHHHHHHHHHHHHHTTCEEEEECTTC--T--TCCCCHHHHTCSEEEECTTTTTCSCCCE
T ss_pred hcCCcEEEEEeecCCCcee-CCHHHHHHHHHHHHHcCCEEEEEeccc--C--CccccccccCCCEEEecchhhcCCCCce
Confidence 3346677777766666754 578899999999999999999999987 3 3344555566655555566999887789
Q ss_pred eeEEeCHHHHhhccCCC---C-------------------cCCCCChHHHHHHHHHHHHHhcCc---hHHHHHHHHHHHH
Q 012363 324 GAALVTEKVASAINYGD---H-------------------GSTFAGSPLVCNAAIAVLDKISNP---AFLASVSKKGHYF 378 (465)
Q Consensus 324 G~v~~~~~i~~~~~~~~---~-------------------~~t~~~~~~~~~aa~a~L~~~~~~---~~~~~~~~~~~~l 378 (465)
|++++++++++.+.+.. . ..+++.++..++++.++|+.+.++ +..++.+++.+++
T Consensus 208 g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l 287 (379)
T 3ke3_A 208 GLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRV 287 (379)
T ss_dssp EEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred EEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence 99999999888775421 0 012366788888888999877543 5566667777777
Q ss_pred HHHHHHHHHcCCCceee-eccceEEEEEecCChHHHHHHHHHCCceEeecCC--------CCEEEEecCCCCcHHHHHHH
Q 012363 379 KETLKQKLARNPHVKDV-RGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGK--------GNVVRLVPPLIISEQELDQA 449 (465)
Q Consensus 379 ~~~l~~~~~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~--------~~~lRi~~~~~~t~e~i~~~ 449 (465)
++.|+++ .+...... ...+.+..+..+.....+.+.|.++||.+.++.. ++.+||+++..+|++||+++
T Consensus 288 ~~~l~~~--g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~ 365 (379)
T 3ke3_A 288 RKVLTDK--GIESVAAEGFEAPGVVVSYTERDDMHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGT 365 (379)
T ss_dssp HHHHHHT--TCCBSBCTTCBCSSEEEEECSCHHHHSSHHHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHH
T ss_pred HHHHHHc--CCEecCCccccCceEEEEccCCcchHHHHHHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHH
Confidence 7777654 22211111 1123334444322222236778899999987631 47899999999999999999
Q ss_pred HHHHHHHHHHhh
Q 012363 450 VEILCKTLPVLD 461 (465)
Q Consensus 450 l~~l~~~l~~~~ 461 (465)
+++|+++++++.
T Consensus 366 ~~~l~~~l~~~~ 377 (379)
T 3ke3_A 366 VERFEKALDEVL 377 (379)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999998765
No 125
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.96 E-value=1.9e-27 Score=237.62 Aligned_cols=333 Identities=11% Similarity=0.055 Sum_probs=210.7
Q ss_pred CEEEecccCcccccCCCCC--HHHHHHHHH-HHhhccc-ccC--CCCCHHHHHHHHHHHhhcC----CC--eEEecCCHH
Q 012363 98 REYLDLSSGIAVNALGHGD--ADWIKAVVD-QANVLTH-VSN--MYYSIPQIELAKRLVACSF----AD--RVFFSNTGT 165 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~--p~v~~a~~~-~~~~~~~-~~~--~~~~~~~~~la~~l~~~~~----~~--~v~~~~sG~ 165 (465)
..++||..|.+..+.|+.+ |.|++|+.+ ++..... .+. .+..+.++++++++....+ .+ +|++|+||+
T Consensus 26 ~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~ 105 (397)
T 3fsl_A 26 SDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGS 105 (397)
T ss_dssp SCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHH
T ss_pred CCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcH
Confidence 3479999887555566655 899999999 8765211 111 1122335566666654433 56 899999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCC--CCCceEeeCCCHHHHHhhcC
Q 012363 166 EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV--MPGVNFVEYGNIEATRKLIQ 243 (465)
Q Consensus 166 eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~le~~l~ 243 (465)
+|+..+++++.... ++++|++.+|+|+++...+...+...... +. ..+... |+++|+++++
T Consensus 106 ~a~~~~~~~~~~~~---------~gd~vl~~~p~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~----d~~~l~~~l~ 168 (397)
T 3fsl_A 106 GALKVGADFLKRYF---------PESGVWVSDPTWENHVAIFAGAGFEVSTY----PWYDEATNGV----RFNDLLATLK 168 (397)
T ss_dssp HHHHHHHHHHHHHC---------TTCCEEEESSCCHHHHHHHHHTTCCEEEE----CCEETTTTEE----CHHHHHHHHT
T ss_pred HHHHHHHHHHHhcC---------CCCeEEEeCCCchhHHHHHHHcCCceEEE----eeeeccCCcC----cHHHHHHHHH
Confidence 99999987554332 58899999999999875554433221111 11 011111 8999999997
Q ss_pred C--CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCC--ccccc----cccCCcccEEEecc
Q 012363 244 P--GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG--YLWAH----EHYGIFPDIMTLAK 315 (465)
Q Consensus 244 ~--~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g--~~~~~----~~~~~~pdi~t~sK 315 (465)
. .+++++++...++++|. .++.+.+++|.++|++||++||+||+|.+|...+ ..... +..+....+.++||
T Consensus 169 ~~~~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 247 (397)
T 3fsl_A 169 TLQAGSIVLLHPCCHNPTGA-DLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSK 247 (397)
T ss_dssp TCCTTCEEEECSSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTT
T ss_pred hCCCCCEEEEeCCCCCCCCc-CCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccc
Confidence 2 34555555444444444 5688889999999999999999999999886542 11111 12333445568999
Q ss_pred cCC-CccceeeEEe---CHHHHhhccCC----CCcCCCCChHHHHHHHHHHHHHh------c--CchHHHHHHHHHHHHH
Q 012363 316 PLA-GGLPIGAALV---TEKVASAINYG----DHGSTFAGSPLVCNAAIAVLDKI------S--NPAFLASVSKKGHYFK 379 (465)
Q Consensus 316 ~lg-~G~~iG~v~~---~~~i~~~~~~~----~~~~t~~~~~~~~~aa~a~L~~~------~--~~~~~~~~~~~~~~l~ 379 (465)
.++ .|+|+||+++ ++++++.+... ....+.+.+++++.++.++|+.. . .++..++++++.+++.
T Consensus 248 ~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 327 (397)
T 3fsl_A 248 IFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELV 327 (397)
T ss_dssp TTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 5999999974 45555433211 01233445677777777666521 0 1234555566666666
Q ss_pred HHHHHHHHcCCCceeeeccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012363 380 ETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 380 ~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
+.|++.....+.....+..|.++++.+ +...+.+.|.++||.+.+++ ||+++ .+++++|++++++|+++
T Consensus 328 ~~L~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gi~v~~g~-----Ris~~-~~~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 328 KVLSTEMPERNFDYLLNQRGMFSYTGL--SAAQVDRLREEFGVYLIASG-----RMCVA-GLNTANVQRVAKAFAAV 396 (397)
T ss_dssp HHHHHHCTTSCCTHHHHCCSSEEECCC--CHHHHHHHHHTTCEECCTTC-----EEEGG-GCCTTTHHHHHHHHHHH
T ss_pred HHHHhcCCCCCceeecCCceEEEecCC--CHHHHHHHHHhCCEEECCCC-----eEEEE-ecCHhhHHHHHHHHHhh
Confidence 666554211122222233466666554 45556677778999998754 88875 34677899999999875
No 126
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.96 E-value=1.3e-27 Score=238.57 Aligned_cols=322 Identities=16% Similarity=0.082 Sum_probs=222.5
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CC-eEEecCCHHHHHHHHH
Q 012363 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--AD-RVFFSNTGTEANEAAI 172 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~-~v~~~~sG~eA~~~al 172 (465)
+++.|+|..+. ++.+|++.+|+.+++.. ++ .....+...++++++++.++ .+ +|++|+||++|+..++
T Consensus 32 ~~~~~l~~~~~------~~~~~~v~~a~~~~~~~--~~-~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~ 102 (393)
T 1vjo_A 32 VPSRLLLGPGP------SNAHPSVLQAMNVSPVG--HL-DPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATI 102 (393)
T ss_dssp CCCCEECSSSC------CCCCHHHHHHHSSCCCC--TT-SHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHH
T ss_pred CccceeccCCC------CCCCHHHHHHHhccccc--cc-CHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHH
Confidence 34568875432 45789999998876543 11 11122447889999999887 45 8999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCCceEEEEcCCccc--CccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEE
Q 012363 173 KFARKFQRHSNPDSKEPATEFVSFTNSFHG--RTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV 250 (465)
Q Consensus 173 ~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~v 250 (465)
+.+. .++++|++.+|+||+ +...+...+.... . .+...+. ..|+++|++++++.++++|
T Consensus 103 ~~~~-----------~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~-~---v~~~~~~----~~d~~~l~~~l~~~~~~~v 163 (393)
T 1vjo_A 103 ANAV-----------EPGDVVLIGVAGYFGNRLVDMAGRYGADVR-T---ISKPWGE----VFSLEELRTALETHRPAIL 163 (393)
T ss_dssp HHHC-----------CTTCEEEEEESSHHHHHHHHHHHHTTCEEE-E---EECCTTC----CCCHHHHHHHHHHHCCSEE
T ss_pred Hhcc-----------CCCCEEEEEcCChhHHHHHHHHHHcCCceE-E---EecCCCC----CCCHHHHHHHHhhCCceEE
Confidence 9774 158899999999998 4432222221111 0 0111110 1489999999864145667
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCccceeeEEe
Q 012363 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALV 328 (465)
Q Consensus 251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~ 328 (465)
++++.++.+|.+.+ +++|.++|++||++||+||+|+ +|... .......+|+++.| |+++++.++|++++
T Consensus 164 ~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~----~~~~~~~~di~~~s~sK~l~~~~~~G~l~~ 234 (393)
T 1vjo_A 164 ALVHAETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LGGVP----IFLDAWGVDLAYSCSQKGLGCSPGASPFTM 234 (393)
T ss_dssp EEESEETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TTTSC----CCTTTTTCSEEECCSSSTTCSCSSCEEEEE
T ss_pred EEeccCCCcceecc----HHHHHHHHHHcCCEEEEECCcc-ccCcC----CcccccCccEEEEcCcccccCCCceEEEEE
Confidence 77776666777655 8899999999999999999998 65432 12223457888655 99987559999999
Q ss_pred CHHHHhhccCC-------CC------------cCCC-CChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHH
Q 012363 329 TEKVASAINYG-------DH------------GSTF-AGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQK 385 (465)
Q Consensus 329 ~~~i~~~~~~~-------~~------------~~t~-~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~ 385 (465)
++++++.+... .+ ..++ +.++++++++.++|+.+.+ ++..++++++.+++.+.|+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 314 (393)
T 1vjo_A 235 SSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI 314 (393)
T ss_dssp CHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc
Confidence 99988876321 11 2234 6788999999999987633 356677777777777777664
Q ss_pred HHcCCCceeeec--cceEEEEEec--CChHHHHHHHHHC-CceEeecC---CCCEEEEec-CCCCcHHHHHHHHHHHHHH
Q 012363 386 LARNPHVKDVRG--LGLIIGIEFD--VSATPVVDACRDS-GLLVLTAG---KGNVVRLVP-PLIISEQELDQAVEILCKT 456 (465)
Q Consensus 386 ~~~~~~~~~~~~--~g~~~~i~~~--~~~~~~~~~l~~~-Gv~v~~~~---~~~~lRi~~-~~~~t~e~i~~~l~~l~~~ 456 (465)
.+.... ..+ .+.++++.++ .+..++.+.|.++ ||.+.++. .++++|+++ ++..+++++++++++|+++
T Consensus 315 --g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~ 391 (393)
T 1vjo_A 315 --GLSLHV-EKEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQV 391 (393)
T ss_dssp --TCCBSS-CGGGBCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHH
T ss_pred --CCcccC-CccccCCcEEEEEcCCCCCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHHHH
Confidence 332211 111 2456777763 3577899999988 99998764 247899994 5677888999999999987
Q ss_pred H
Q 012363 457 L 457 (465)
Q Consensus 457 l 457 (465)
+
T Consensus 392 l 392 (393)
T 1vjo_A 392 L 392 (393)
T ss_dssp H
T ss_pred h
Confidence 6
No 127
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.95 E-value=1.1e-27 Score=240.75 Aligned_cols=335 Identities=14% Similarity=0.054 Sum_probs=211.2
Q ss_pred CCEEEecccCcccccCCC--CCHHHHHHHHH-HHhhcc-ccc--CCCCCHHHHHHHHHHHhhcC----CCeEEe--cCCH
Q 012363 97 GREYLDLSSGIAVNALGH--GDADWIKAVVD-QANVLT-HVS--NMYYSIPQIELAKRLVACSF----ADRVFF--SNTG 164 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh--~~p~v~~a~~~-~~~~~~-~~~--~~~~~~~~~~la~~l~~~~~----~~~v~~--~~sG 164 (465)
|+.++||..+.+...-|+ .+|.|.+++.+ ++.... +.+ ..+..+.++++++++....+ .++|++ |+||
T Consensus 28 ~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~ 107 (412)
T 1yaa_A 28 RATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSG 107 (412)
T ss_dssp CSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHH
T ss_pred CCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccch
Confidence 566788888875333343 56889999998 775321 111 11122335555555543333 679999 9999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCC-CC-CceEeeCCCHHHHHhhc
Q 012363 165 TEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV-MP-GVNFVEYGNIEATRKLI 242 (465)
Q Consensus 165 ~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~d~~~le~~l 242 (465)
++|++++++++..+. ++++|++.+|+|+++...+...+...... +. .+ +.. .|+++|++++
T Consensus 108 ~~a~~~~~~~~~~~~---------~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v----~~~~~~~~~----~d~~~l~~~l 170 (412)
T 1yaa_A 108 TGALHISAKFFSKFF---------PDKLVYLSKPTWANHMAIFENQGLKTATY----PYWANETKS----LDLNGFLNAI 170 (412)
T ss_dssp HHHHHHHHHHHHHHC---------TTCCEEEEESCCTTHHHHHHTTTCCEEEE----ECEETTTTE----ECHHHHHHHH
T ss_pred HhHHHHHHHHHHHhC---------CCCEEEEeCCCCccHHHHHHHcCceEEEE----eeecCCCCc----cCHHHHHHHH
Confidence 999999977665442 57899999999999876554433221110 11 00 111 2789999988
Q ss_pred CCC--CeEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCC---ccccc-cc--cC----Cccc
Q 012363 243 QPG--KTAAVF-VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG---YLWAH-EH--YG----IFPD 309 (465)
Q Consensus 243 ~~~--~~a~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g---~~~~~-~~--~~----~~pd 309 (465)
++. ..++++ +.|.|++| ..++.+.+++|.++|++||+++|+||+|.+|++.+ ..... .. .+ ....
T Consensus 171 ~~~~~~~~~~~~~~p~nPtG--~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 248 (412)
T 1yaa_A 171 QKAPEGSIFVLHSCAHNPTG--LDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFV 248 (412)
T ss_dssp HHSCTTCEEEEECSSCTTTC--CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEE
T ss_pred HhCCCCCEEEEeCCCCCCCC--CCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEE
Confidence 632 234444 44455444 35688999999999999999999999999886554 22112 11 11 1222
Q ss_pred EEEecccCCC-ccceeeEE--e-----CHH----HHhhccCCCCcCCCCChHHHHHHHHHHHHHhc--------CchHHH
Q 012363 310 IMTLAKPLAG-GLPIGAAL--V-----TEK----VASAINYGDHGSTFAGSPLVCNAAIAVLDKIS--------NPAFLA 369 (465)
Q Consensus 310 i~t~sK~lg~-G~~iG~v~--~-----~~~----i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~--------~~~~~~ 369 (465)
+.++||.++. |+|+||++ + +++ +++.+.......+.+.+++++.++.++|+... .++..+
T Consensus 249 ~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 328 (412)
T 1yaa_A 249 CQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSS 328 (412)
T ss_dssp EEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred EeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4578999997 99999998 7 566 77766532223334558899999998887541 123344
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCceeee-ccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHH
Q 012363 370 SVSKKGHYFKETLKQKLARNPHVKDVR-GLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQ 448 (465)
Q Consensus 370 ~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~ 448 (465)
+++++.+++.+.|++..... .+.... ..|.++++.+ +...+...+.++||.+.+ .+||+++. .+++++++
T Consensus 329 ~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gi~v~~-----~~Ris~~~-~~~~~i~~ 399 (412)
T 1yaa_A 329 RITKMRHALRDHLVKLGTPG-NWDHIVNQCGMFSFTGL--TPQMVKRLEETHAVYLVA-----SGRASIAG-LNQGNVEY 399 (412)
T ss_dssp HHHHHHHHHHHHHHHHTCSS-CCTHHHHCCSSEEECCC--CHHHHHHHHHHHCEECCT-----TSEEEGGG-CCTTTHHH
T ss_pred HHHHHHHHHHHHHHhhCCCC-CeeeeccCceEEEeeCC--CHHHHHHHHHhCCEEecc-----CcEEEEcc-CCHhHHHH
Confidence 45555555555555431000 122222 3345555433 445564445578999876 26998874 58999999
Q ss_pred HHHHHHHHHHH
Q 012363 449 AVEILCKTLPV 459 (465)
Q Consensus 449 ~l~~l~~~l~~ 459 (465)
++++|+++++.
T Consensus 400 ~~~~l~~~~~~ 410 (412)
T 1yaa_A 400 VAKAIDEVVRF 410 (412)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998864
No 128
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.95 E-value=7.5e-26 Score=226.70 Aligned_cols=325 Identities=14% Similarity=0.038 Sum_probs=219.7
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccc-cCCC-----CCHHHHHHHHHHHhhcC--CCeEEecCCHHHHH
Q 012363 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV-SNMY-----YSIPQIELAKRLVACSF--ADRVFFSNTGTEAN 168 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~-~~~~-----~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~ 168 (465)
+..|||+.++. +.+|+|++++.+++...... ...+ ..+...+++++++++++ .++|++++||++++
T Consensus 26 ~~~~ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al 99 (406)
T 3cai_A 26 GWVHFDAPAGM------LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLL 99 (406)
T ss_dssp SCEECBGGGCC------CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHH
T ss_pred CeEEEeCCCcC------CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHH
Confidence 57888887653 47899999999998763211 1112 13447889999999988 46899999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccc----cCCCCcCCCCCCCC-CCceEeeCCCHHHHHhhcC
Q 012363 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL----TSKEHYRSPFEPVM-PGVNFVEYGNIEATRKLIQ 243 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~d~~~le~~l~ 243 (465)
..+++.+..... ++++|++.+++|++.......+ +....+ .+.. .+.. -|+++|+++++
T Consensus 100 ~~~~~~l~~~~~--------~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~----v~~~~~~~~----~d~~~l~~~l~ 163 (406)
T 3cai_A 100 SLLAEASSSRAG--------LGYEVIVSRLDDEANIAPWLRAAHRYGAKVKW----AEVDIETGE----LPTWQWESLIS 163 (406)
T ss_dssp HHHHHHTGGGGB--------TTCEEEEETTSCGGGTHHHHHHHHHHBCEEEE----ECCCTTTCC----CCGGGHHHHCC
T ss_pred HHHHHHHhhccC--------CCCEEEEcCCccHHHHHHHHHHHHhcCCeEEE----EecCcccCC----cCHHHHHHHhC
Confidence 998886521111 5789999999998865443321 111110 1111 1110 18899999997
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE--EecccCCCcc
Q 012363 244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGL 321 (465)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~G~ 321 (465)
+ ++++|++++.++++|.+.+ +++|.++|++||++||+||+|+ +|... +....++ +|++ +++|.+|++
T Consensus 164 ~-~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~~~--~d~~~~s~~K~~g~~- 232 (406)
T 3cai_A 164 K-STRLVAVNSASGTLGGVTD----LRAMTKLVHDVGALVVVDHSAA-APYRL--LDIRETD--ADVVTVNAHAWGGPP- 232 (406)
T ss_dssp T-TEEEEEEESBCTTTCBBCC----CHHHHHHHHHTTCEEEEECTTT-TTTCC--CCHHHHC--CSEEEEEGGGGTSCS-
T ss_pred C-CceEEEEeCCcCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCCC--CCchhcC--CCEEEeehhhhcCCC-
Confidence 5 5788888887777787765 8899999999999999999997 33221 2223334 5665 567987643
Q ss_pred cee-eEEeCHHHHhhccCCCC---------cCCCCChHHHHHHHHHHHHHhcCch-------------HHHHHHHHHHHH
Q 012363 322 PIG-AALVTEKVASAINYGDH---------GSTFAGSPLVCNAAIAVLDKISNPA-------------FLASVSKKGHYF 378 (465)
Q Consensus 322 ~iG-~v~~~~~i~~~~~~~~~---------~~t~~~~~~~~~aa~a~L~~~~~~~-------------~~~~~~~~~~~l 378 (465)
+| ++++++++++.+.+..+ ....+.++.+++++.++++.+.+.+ ..+++.+....+
T Consensus 233 -~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (406)
T 3cai_A 233 -IGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRV 311 (406)
T ss_dssp -CEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred -cCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHH
Confidence 89 99999999888765432 1123457777777778887664321 234444444444
Q ss_pred HHHHHHHHHcCCCceeeec---cceEEEEEec-CChHHHHHHHHHCCceEeecC------------CCCEEEEecCCCCc
Q 012363 379 KETLKQKLARNPHVKDVRG---LGLIIGIEFD-VSATPVVDACRDSGLLVLTAG------------KGNVVRLVPPLIIS 442 (465)
Q Consensus 379 ~~~l~~~~~~~~~~~~~~~---~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~------------~~~~lRi~~~~~~t 442 (465)
++.+.+.+.+.+.+..... .+.++++.+. .+..++.+.|.++||.+.++. ..+++|++++..++
T Consensus 312 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~~~t 391 (406)
T 3cai_A 312 FDYLMVSLRSLPLVMLIGRPEAQIPVVSFAVHKVPADRVVQRLADNGILAIANTGSRVLDVLGVNDVGGAVTVGLAHYST 391 (406)
T ss_dssp HHHHHHHHHTCTTEEECCCCSSBCSEEEEEETTBCHHHHHHHHHHTTEECEECCSCHHHHHHTTTTTTCCEEEECCTTCC
T ss_pred HHHHHHHHhcCCCeEEcCCccccCCEEEEEECCcCHHHHHHHHHHCCcEEecCChHHHHHHcCCCCCCCeEEEEeecCCC
Confidence 5555555555543322221 3457777773 457789999999999998753 13689999999899
Q ss_pred HHHHHHHHHHHHH
Q 012363 443 EQELDQAVEILCK 455 (465)
Q Consensus 443 ~e~i~~~l~~l~~ 455 (465)
++++++++++|++
T Consensus 392 ~e~i~~~~~~l~~ 404 (406)
T 3cai_A 392 MAEVDQLVRALAS 404 (406)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999874
No 129
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.95 E-value=7.3e-28 Score=239.86 Aligned_cols=318 Identities=16% Similarity=0.096 Sum_probs=216.3
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--C-CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 012363 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--A-DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT 191 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~-~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~ 191 (465)
.+|+|++|+.+++.. +. .....+...+++++++++++ . ++|++++||++|++.+++.+. .+++
T Consensus 34 ~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~-----------~~gd 99 (393)
T 3kgw_A 34 LAPRVLAAGSLRMIG--HM-QKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLL-----------EPGD 99 (393)
T ss_dssp CCHHHHHHTTCCCCC--TT-SHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHC-----------CTTC
T ss_pred CCHHHHHHhcccccC--cc-cHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcC-----------CCCC
Confidence 678888888764321 11 11112346788999999887 2 369999999999999999764 2689
Q ss_pred eEEEEcCCcccCcc-ccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 012363 192 EFVSFTNSFHGRTM-GALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQ 270 (465)
Q Consensus 192 ~ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~ 270 (465)
+|++..++||+... ......+..... .+...+. ..|+++|+++++++++++|++++.++.+|.+.+ ++
T Consensus 100 ~vl~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~----~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~----l~ 168 (393)
T 3kgw_A 100 SFLTGTNGIWGMRAAEIADRIGARVHQ---MIKKPGE----HYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQP----LD 168 (393)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTCEEEE---EECCTTC----CCCHHHHHHHHHHHCCSEEEEESEETTTTEECC----CT
T ss_pred EEEEEeCCchhHHHHHHHHHcCCceEE---EeCCCCC----CCCHHHHHHHHhhCCCcEEEEeccCCcchhhcc----HH
Confidence 99999999876431 111111111100 1111111 138999999997535667777777777777665 88
Q ss_pred HHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEE--ecccCCCccceeeEEeCHHHHhhccCCCC-------
Q 012363 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTEKVASAINYGDH------- 341 (465)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~~i~~~~~~~~~------- 341 (465)
+|+++|++||++||+||+|+ +| +..+..+.++ +|+++ ++|+++++.++|++++++++++.+.....
T Consensus 169 ~i~~l~~~~~~~li~De~~~-~g--~~~~~~~~~~--~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 243 (393)
T 3kgw_A 169 GFGELCHRYQCLLLVDSVAS-LG--GVPIYMDQQG--IDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYT 243 (393)
T ss_dssp THHHHHHHTTCEEEEECTTT-TT--TSCCCTTTTT--CCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTT
T ss_pred HHHHHHHHcCCEEEEECCcc-cc--CcccchhhcC--CCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceee
Confidence 99999999999999999987 32 2222233333 46665 55999877789999999999888754211
Q ss_pred ----------------cCCCCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCce-e-eeccce
Q 012363 342 ----------------GSTFAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVK-D-VRGLGL 400 (465)
Q Consensus 342 ----------------~~t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~-~~~~g~ 400 (465)
..+++.++.+++++.++++.+.+ +++.++++++.+++.+.|+++ ...... . ....+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~ 321 (393)
T 3kgw_A 244 DITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM--GLKFFVKDPEIRLPT 321 (393)
T ss_dssp CHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCBSSSSGGGBCSS
T ss_pred cHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc--CCeeccCChhhcCCe
Confidence 11345578888888888886644 455667777777777777664 222110 1 122356
Q ss_pred EEEEEec--CChHHHHHHHHHC-CceEeecC---CCCEEEEec-CCCCcHHHHHHHHHHHHHHHHHhhhcC
Q 012363 401 IIGIEFD--VSATPVVDACRDS-GLLVLTAG---KGNVVRLVP-PLIISEQELDQAVEILCKTLPVLDSNS 464 (465)
Q Consensus 401 ~~~i~~~--~~~~~~~~~l~~~-Gv~v~~~~---~~~~lRi~~-~~~~t~e~i~~~l~~l~~~l~~~~~~~ 464 (465)
++++.++ .+..++.+.|+++ ||.+.++. .++++|+++ ++.++++++++++++|+++++++++++
T Consensus 322 ~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~ 392 (393)
T 3kgw_A 322 ITTVTVPAGYNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQHCPKNK 392 (393)
T ss_dssp EEEEECCTTBCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSCBC-
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhhhcc
Confidence 6667763 4678899999988 99998753 247899998 777799999999999999999876553
No 130
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.95 E-value=5e-27 Score=232.74 Aligned_cols=316 Identities=12% Similarity=0.070 Sum_probs=209.8
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC-C---CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 012363 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-A---DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~---~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~ 190 (465)
.+|+|++|+.+++.. +. .....+...++++++++.++ . +.+++++||++|++.+++.+. .++
T Consensus 30 ~~~~v~~a~~~~~~~--~~-~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~-----------~~g 95 (376)
T 3f0h_A 30 SSEEVRAIGAEQVPY--FR-TTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF-----------TKK 95 (376)
T ss_dssp CCHHHHHHHTSCCCC--CS-SHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC-----------CTT
T ss_pred CcHHHHHHhcCCCCC--CC-CHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc-----------CCC
Confidence 567888887765422 11 11112346788899999887 2 345559999999999998765 168
Q ss_pred ceEEEEcCCcccCccccc-cccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 012363 191 TEFVSFTNSFHGRTMGAL-ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFL 269 (465)
Q Consensus 191 ~~ii~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l 269 (465)
++||+.+++||+...... ...+.... ..+...+. ..|+++|++++++ ++++|++++.++.+|.+.+ +
T Consensus 96 d~vi~~~~~~~~~~~~~~~~~~g~~~~---~v~~~~~~----~~d~~~l~~~~~~-~~~~v~~~~~~nptG~~~~----l 163 (376)
T 3f0h_A 96 DKVLVIDGGSFGHRFVQLCEIHEIPYV---ALKLEHGK----KLTKEKLYEYDNQ-NFTGLLVNVDETSTAVLYD----T 163 (376)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTTCCEE---EEECCTTC----CCCHHHHHTTTTS-CCCEEEEESEETTTTEECC----H
T ss_pred CeEEEEeCChhhHHHHHHHHHcCCceE---EEeCCCCC----CCCHHHHHHhhcc-CceEEEEecccCCcceecC----H
Confidence 899999999988543211 11111110 00111111 1289999998864 5667777776667777665 9
Q ss_pred HHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhccCCCC--------
Q 012363 270 QFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDH-------- 341 (465)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~-------- 341 (465)
++|+++|++||+++|+||+|+.+++. +..+.+++...+.+++|+++++.++|++++++++++.+.+...
T Consensus 164 ~~i~~l~~~~~~~li~D~~~~~~~~~---~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (376)
T 3f0h_A 164 MMIGEFCKKNNMFFVCDCVSAFLADP---FNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLK 240 (376)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTTTSC---CCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHH
T ss_pred HHHHHHHHHcCCEEEEEcCccccCcc---ccccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCceeecHH
Confidence 99999999999999999999865332 2344455545556677999876678899999999887764211
Q ss_pred ---------cCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceee-eccceEEEEEe-cCCh
Q 012363 342 ---------GSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDV-RGLGLIIGIEF-DVSA 410 (465)
Q Consensus 342 ---------~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~i~~-~~~~ 410 (465)
...++.+..+++++.++++.+.+.+..+++.+....+++.+.+.+.+.+..... ...+.++.+.. ..+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (376)
T 3f0h_A 241 DALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLPFELVSESPANGVTSVHPTTANA 320 (376)
T ss_dssp HHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECCSSBBTTEEEEEESSSCH
T ss_pred HHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCccccCceEEEEeCCCCCH
Confidence 123445555667777788766544334555555556666666655555421111 11233333333 3467
Q ss_pred HHHHHHHHHC-CceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012363 411 TPVVDACRDS-GLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 411 ~~~~~~l~~~-Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
.++.+.|.++ ||.+.++. .++++|++++..+|++++++++++|++++++
T Consensus 321 ~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 321 YDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp HHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 8899999998 99998763 2478999999999999999999999998863
No 131
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.95 E-value=1.4e-27 Score=233.20 Aligned_cols=306 Identities=16% Similarity=0.113 Sum_probs=203.7
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC-----CCeEEecCCHHHHHHHHH
Q 012363 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-----ADRVFFSNTGTEANEAAI 172 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-----~~~v~~~~sG~eA~~~al 172 (465)
.+++||.++.. +++ .+|++.+++.+++.+... ..|+.....++++.++++++ .++|++++||++|+..++
T Consensus 19 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~--~~y~~~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~ 93 (335)
T 1uu1_A 19 RDKTYLALNEN--PFP-FPEDLVDEVFRRLNSDAL--RIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMM 93 (335)
T ss_dssp CCSEEESSCCC--SSC-CCHHHHHHHHHTCCGGGG--GSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHH
T ss_pred CcceECCCCCC--CCC-CCHHHHHHHHHHhhhhhh--hcCCCCchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHH
Confidence 46899988765 455 689999999998732111 12232235567777777665 578999999999999998
Q ss_pred HHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEE-
Q 012363 173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVF- 251 (465)
Q Consensus 173 ~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi- 251 (465)
+.+ +++|++. |+||++...+...+..... .+...+.. .|+++| + ++++|+
T Consensus 94 ~~~--------------gd~Vl~~-p~y~~~~~~~~~~g~~~~~----v~~~~~~~----~d~~~l-----~-~~~~v~l 144 (335)
T 1uu1_A 94 LMF--------------DRSVFFP-PTYSCYRIFAKAVGAKFLE----VPLTKDLR----IPEVNV-----G-EGDVVFI 144 (335)
T ss_dssp HHS--------------SEEEECS-SSCHHHHHHHHHHTCEEEE----CCCCTTSC----CCCCCC-----C-TTEEEEE
T ss_pred HHh--------------CCcEEEC-CCcHHHHHHHHHcCCeEEE----eccCCCCC----CCHHHc-----C-CCCEEEE
Confidence 854 2579999 9999987654433322111 11111111 133433 2 344554
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcccc-ccccCCcccEEEecccCC-CccceeeEEeC
Q 012363 252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA-HEHYGIFPDIMTLAKPLA-GGLPIGAALVT 329 (465)
Q Consensus 252 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~-~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~ 329 (465)
++|.|++ |. .++.+++++|.++| | ++|+||+|++|+. +.... .+..+....+.++||.+| +|+|+||++++
T Consensus 145 ~~p~npt-G~-~~~~~~l~~l~~~~---~-~li~De~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~ 217 (335)
T 1uu1_A 145 PNPNNPT-GH-VFEREEIERILKTG---A-FVALDEAYYEFHG-ESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVAS 217 (335)
T ss_dssp ESSCTTT-CC-CCCHHHHHHHHHTT---C-EEEEECTTHHHHC-CCCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEEC
T ss_pred eCCCCCC-CC-CCCHHHHHHHHHhC---C-EEEEECcchhhcc-hhHHHHhhhCCCEEEEecchhhcCCcccCeEEEEeC
Confidence 7775544 44 34766676666666 8 9999999997643 22111 222344456678999998 69999999999
Q ss_pred HHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC
Q 012363 330 EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS-NPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV 408 (465)
Q Consensus 330 ~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~ 408 (465)
+++++.+... ..+++.|+++++++.++|+..+ .++..++++++.+++.+.|++. +. ...++.|.++++.++.
T Consensus 218 ~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~-~~~~~~~~~~~~~~~~ 290 (335)
T 1uu1_A 218 EKFIDAYNRV--RLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM----GY-RITDSRGNFVFVFMEK 290 (335)
T ss_dssp HHHHHHHHHH--SCTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH----TC-CBCCCCSSEEEEECCT
T ss_pred HHHHHHHHHh--cCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----Cc-EEcCCCCeEEEEECCC
Confidence 9998887642 2457889999999999998521 1334555566666666666554 22 2234557888888743
Q ss_pred -ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012363 409 -SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 409 -~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
+..++.+.|.++||.+.+.. +++|+++. +++|+++++++|+++
T Consensus 291 ~~~~~~~~~l~~~gi~v~~~~--~~iRis~~---~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 291 EEKERLLEHLRTKNVAVRSFR--EGVRITIG---KREENDMILRELEVF 334 (335)
T ss_dssp HHHHHHHHHHHHHTEEEEEET--TEEEEECC---CHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHCCEEEEECC--CeEEEEeC---CHHHHHHHHHHHHhh
Confidence 45678999999999999842 78999864 467899999988753
No 132
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.95 E-value=5.5e-27 Score=230.61 Aligned_cols=320 Identities=12% Similarity=0.074 Sum_probs=210.7
Q ss_pred EEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHH
Q 012363 100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARK 177 (465)
Q Consensus 100 ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~ 177 (465)
+++|.++. .|+.+|++++++.+++... ....+..+...++++++++.++ .++|++++||++|++.+++.++.
T Consensus 15 ~i~l~~~~----~~~~~~~v~~a~~~~~~~~--~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~~ 88 (359)
T 1svv_A 15 PYSFVNDY----SVGMHPKILDLMARDNMTQ--HAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALR 88 (359)
T ss_dssp CEECSCSC----SSCCCHHHHHHHHHHTTCC--CCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCC
T ss_pred eEEecCCC----cCCCCHHHHHHHHHHHhhc--cccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHhC
Confidence 56666542 4579999999999988642 2234556778999999999887 66899999999999999998752
Q ss_pred HhhhcCCCCCCCCceEEEEcCCcccCccc-cccccCCCCcCCCCCCCCCCceEeeCC----CHHHHHhhcCCC------C
Q 012363 178 FQRHSNPDSKEPATEFVSFTNSFHGRTMG-ALALTSKEHYRSPFEPVMPGVNFVEYG----NIEATRKLIQPG------K 246 (465)
Q Consensus 178 ~t~~~~~~~~~~~~~ii~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~~le~~l~~~------~ 246 (465)
++++|++.+|+||++... .....+ ..+..+|.+ |+++|+++++++ +
T Consensus 89 -----------~gd~vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~ 145 (359)
T 1svv_A 89 -----------PWEAVIATQLGHISTHETGAIEATG------------HKVVTAPCPDGKLRVADIESALHENRSEHMVI 145 (359)
T ss_dssp -----------TTEEEEEETTSHHHHSSTTHHHHTT------------CCEEEECCTTSCCCHHHHHHHHHHSCSTTSCE
T ss_pred -----------CCCEEEEcccchHHHHHHHHHhcCC------------CeeEEEeCCCCeecHHHHHHHHHHHHhccCCC
Confidence 588999999999988753 111111 112223322 689999998643 3
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC--CCCCccccccccC--CcccEEEe--cccCCCc
Q 012363 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL--GRTGYLWAHEHYG--IFPDIMTL--AKPLAGG 320 (465)
Q Consensus 247 ~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~--gr~g~~~~~~~~~--~~pdi~t~--sK~lg~G 320 (465)
+++|++++.+ ++|.+ .+.+++++|+++|++||++||+||+|.+| |..+.. ....+ ..+|++++ +|. ++.
T Consensus 146 ~~~v~~~~~~-ptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~--~~~~~~~~~~d~~~~s~~K~-g~~ 220 (359)
T 1svv_A 146 PKLVYISNTT-EVGTQ-YTKQELEDISASCKEHGLYLFLDGARLASALSSPVND--LTLADIARLTDMFYIGATKA-GGM 220 (359)
T ss_dssp EEEEEEESSC-TTSCC-CCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCC--CCHHHHHHHCSEEEEECTTT-TCS
T ss_pred ceEEEEEcCC-CCcee-cCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcc--hhhhhhhhcCCEEEEecccC-CCC
Confidence 7788777764 45654 46899999999999999999999999654 443321 11111 24677665 574 334
Q ss_pred cceeeEEeCHHHHhhccCCC--CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeecc
Q 012363 321 LPIGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGL 398 (465)
Q Consensus 321 ~~iG~v~~~~~i~~~~~~~~--~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 398 (465)
.++|++++++++++.+.... .+.+++.+....++..++|+...-++..++++++.+++.+.| +. ..+... .+..
T Consensus 221 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~-~~~~~~--~~~~ 296 (359)
T 1svv_A 221 FGEALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGL-EA-CGIRLA--WPSA 296 (359)
T ss_dssp SCEEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHH-HH-TTCCBS--SCCS
T ss_pred CceEEEEEcccHHHHHHHHHhcCCcccccchhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh-cc-CCeEEc--cCCc
Confidence 66789999998877665321 223333233333333233321001245566666667776666 32 122211 1233
Q ss_pred ceEEEEEecCChHHHHHHHHHC-CceEeec--CCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012363 399 GLIIGIEFDVSATPVVDACRDS-GLLVLTA--GKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 399 g~~~~i~~~~~~~~~~~~l~~~-Gv~v~~~--~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
+.++++.++ .++.+.|+++ ||.+.+. ...+++|+++++.++++++++++++|+++++++
T Consensus 297 ~~~~~~~~~---~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 358 (359)
T 1svv_A 297 SNQLFPILE---NTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST 358 (359)
T ss_dssp SSEECBEEE---HHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred cceEEEEcC---HHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence 555555553 5788999998 9998542 123689999999999999999999999887654
No 133
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.95 E-value=6.6e-27 Score=232.20 Aligned_cols=314 Identities=13% Similarity=0.101 Sum_probs=215.8
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--C--CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 012363 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--A--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~--~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~ 190 (465)
.+|+|++++.+++... ......+...++++++++.++ . ++|++++||++|+. +++.+. .++
T Consensus 13 ~~~~v~~a~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~-----------~~g 77 (384)
T 3zrp_A 13 IKEDVLVAGLENNVGF---TSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLL-----------KPN 77 (384)
T ss_dssp CCHHHHHHTTCCSCCT---TSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGC-----------CTT
T ss_pred CCHHHHHHhhcccccc---ccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhc-----------CCC
Confidence 5788888887765321 111123447788999999887 3 67999999999999 887553 268
Q ss_pred ceEEEEcCCcccCccccc-cccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 012363 191 TEFVSFTNSFHGRTMGAL-ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFL 269 (465)
Q Consensus 191 ~~ii~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l 269 (465)
++|++.+++||+.....+ ...+..... .+...+. ..|+++|+++++++++++|++++.++++|.+.+ +
T Consensus 78 d~vi~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~~----~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~----l 146 (384)
T 3zrp_A 78 DKILVVSNGVFGDRWEQIFKRYPVNVKV---LRPSPGD----YVKPGEVEEEVRKSEYKLVALTHVETSTGVREP----V 146 (384)
T ss_dssp CEEEEECSSHHHHHHHHHHTTSSCEEEE---ECCSTTC----CCCHHHHHHHHHHSCEEEEEEESEETTTTEECC----H
T ss_pred CEEEEecCCcchHHHHHHHHHcCCcEEE---ecCCCCC----CCCHHHHHHHHHhCCCcEEEEeCCCCCCceECc----H
Confidence 899999999998532221 111111100 1111111 128999999997546888888887777787765 8
Q ss_pred HHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEE--ecccCCCccceeeEEeCHHHHhhc-cCCC------
Q 012363 270 QFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTEKVASAI-NYGD------ 340 (465)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~~i~~~~-~~~~------ 340 (465)
++|.++|++||++||+||+|+ ++.. ...... ..+|+++ ++|+++++.++|++++++++++.+ .+..
T Consensus 147 ~~i~~l~~~~~~~li~D~a~~-~~~~--~~~~~~--~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~ 221 (384)
T 3zrp_A 147 KDVINKIRKYVELIVVDGVSS-VGAE--EVKAEE--WNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYL 221 (384)
T ss_dssp HHHHHHHGGGEEEEEEECTTT-TTTS--CCCTTT--TTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTT
T ss_pred HHHHHHHHhcCCEEEEECccc-ccCc--cccccc--cCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCcccc
Confidence 999999999999999999987 3221 111222 2356665 559998777899999999988776 2110
Q ss_pred ---------------CcCCC-CChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCcee--eeccc
Q 012363 341 ---------------HGSTF-AGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKD--VRGLG 399 (465)
Q Consensus 341 ---------------~~~t~-~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--~~~~g 399 (465)
....+ +.++..+++..++++.+.+ +++.++++++.+++.+.|+++ .+..... ....+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~ 299 (384)
T 3zrp_A 222 DLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL--GLEIVARRPESYSN 299 (384)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCBSCSSGGGBCS
T ss_pred cHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC--CCeEccCcccccCc
Confidence 12223 4566777777777776543 356667777777777777664 2221111 11236
Q ss_pred eEEEEEec-CChHHHHHHHHHCCceEeecCC--CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012363 400 LIIGIEFD-VSATPVVDACRDSGLLVLTAGK--GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 400 ~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~~--~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
.++++.++ .+..++.+.|.++||.+.++.. .+++|++++..++++++++++++|+++++++.
T Consensus 300 ~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~ 364 (384)
T 3zrp_A 300 TVTGVILKVADPQKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIERTLRKLG 364 (384)
T ss_dssp SEEEEECSSSCHHHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCHHHHHHHHHHCCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHHHHHHcC
Confidence 67777774 4678899999999999987642 16899999988999999999999999998765
No 134
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.95 E-value=2.2e-26 Score=226.83 Aligned_cols=324 Identities=12% Similarity=0.110 Sum_probs=217.7
Q ss_pred EEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC-C---CeEEecCCHHHHHHHHHHHH
Q 012363 100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-A---DRVFFSNTGTEANEAAIKFA 175 (465)
Q Consensus 100 ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~---~~v~~~~sG~eA~~~al~~a 175 (465)
+++|..| +++ .+|+|++|+.+++. +.+..+..+...+++++++++++ . +++++++||++|+..+++.+
T Consensus 5 ~~~~~~g----p~~-~~~~v~~a~~~~~~---~~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~ 76 (366)
T 1m32_A 5 YLLLTPG----PLT-TSRTVKEAMLFDSC---TWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSA 76 (366)
T ss_dssp CEECSSS----SCC-CCHHHHHTTCCCCC---TTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHS
T ss_pred cccccCC----CcC-CCHHHHHHHhhhhc---CCCHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHh
Confidence 5777766 333 78999999877531 21110111346788889998887 2 37999999999999999977
Q ss_pred HHHhhhcCCCCCCCCceEEEEcCCcccCcc-ccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCC-CeEEEEEc
Q 012363 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTM-GALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG-KTAAVFVE 253 (465)
Q Consensus 176 ~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-~~a~vi~e 253 (465)
+. ++++|+++++.||+... ......+..... .+.... ...|+++|+++++++ ++++|++.
T Consensus 77 ~~-----------~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~----~~~d~~~l~~~l~~~~~~~~v~~~ 138 (366)
T 1m32_A 77 LG-----------PQDKVLIVSNGAYGARMVEMAGLMGIAHHA---YDCGEV----ARPDVQAIDAILNADPTISHIAMV 138 (366)
T ss_dssp CC-----------TTCCEEEEESSHHHHHHHHHHHHHTCCEEE---EECCTT----SCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred cC-----------CCCeEEEEeCCCccHHHHHHHHHhCCceEE---EeCCCC----CCCCHHHHHHHHhcCCCeEEEEEe
Confidence 41 57889999888887532 111111111100 111111 114899999998742 34555444
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE--EecccCCCccceeeEEeCHH
Q 012363 254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAALVTEK 331 (465)
Q Consensus 254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~~~ 331 (465)
..++++|.+.+ +++|.++|++||++||+||+|+ ++... ..... ..+|++ +++|+++++.++|+++++++
T Consensus 139 ~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~~~~~--~~~~~--~~~di~~~s~~K~~~~~~g~G~~~~~~~ 209 (366)
T 1m32_A 139 HSETTTGMLNP----IDEVGALAHRYGKTYIVDAMSS-FGGIP--MDIAA--LHIDYLISSANKCIQGVPGFAFVIAREQ 209 (366)
T ss_dssp SEETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCTTT--TTCSEEEEESSSTTCCCSSEEEEEEEHH
T ss_pred cccCCcceecC----HHHHHHHHHHcCCEEEEECCcc-ccCcC--ccccc--cCccEEEecCcccccCCCceEEEEECHH
Confidence 44445566655 8999999999999999999997 43332 11222 236766 56799977667899999999
Q ss_pred HHhhccCCCC------------------cCCCCChHHHHHHHHHHHHHhcC----chHHHHHHHHHHHHHHHHHHHHHcC
Q 012363 332 VASAINYGDH------------------GSTFAGSPLVCNAAIAVLDKISN----PAFLASVSKKGHYFKETLKQKLARN 389 (465)
Q Consensus 332 i~~~~~~~~~------------------~~t~~~~~~~~~aa~a~L~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~ 389 (465)
+++.+..... ...++.++++++++.++|+.+.+ ++..++++++.+++.+.|+++ ..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~--~~ 287 (366)
T 1m32_A 210 KLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL--GF 287 (366)
T ss_dssp HHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT--TC
T ss_pred HHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC--CC
Confidence 9887764211 01357788888888888887643 335666777777777777653 22
Q ss_pred CCceee-eccceEEEEEecC----ChHHHHHHHHHCCceEeecCC--CCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012363 390 PHVKDV-RGLGLIIGIEFDV----SATPVVDACRDSGLLVLTAGK--GNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 390 ~~~~~~-~~~g~~~~i~~~~----~~~~~~~~l~~~Gv~v~~~~~--~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
...... ...|.++++.++. +..++.+.|.++||.+.++.. ++++|++++..++++++++++++|+++++++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 365 (366)
T 1m32_A 288 NTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAMYWT 365 (366)
T ss_dssp CBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHCTTC
T ss_pred eeccCchhcCceEEEEEcCccCCCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Confidence 221111 1246688888742 567899999999999987642 4789999999899999999999999887543
No 135
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.95 E-value=1.3e-26 Score=232.36 Aligned_cols=309 Identities=13% Similarity=0.090 Sum_probs=213.6
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CC-eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 012363 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--AD-RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT 191 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~-~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~ 191 (465)
.+|+|.+++.+++.. +. .........++++++++.++ .+ .+++++||++|++.+++.+. .+++
T Consensus 24 ~~~~v~~a~~~~~~~--~~-~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~-----------~~gd 89 (411)
T 3nnk_A 24 ADPRVLRAMSSQLIG--QY-DPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAI-----------RPGD 89 (411)
T ss_dssp CCHHHHHHHTSCCCC--TT-CHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHC-----------CTTC
T ss_pred CCHHHHHHhhccccc--cc-cHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhc-----------CCCC
Confidence 568888887764311 11 10112336788999999887 33 48899999999999999774 2689
Q ss_pred eEEEEcCCcccC--ccccccccCCCCcCCCCCCCCCCceEeeCC-----CHHHHHhhcCCCCeEEEEEcccCCCCCcccC
Q 012363 192 EFVSFTNSFHGR--TMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPGKTAAVFVEPIQGEGGIYSA 264 (465)
Q Consensus 192 ~ii~~~~~yhg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~ 264 (465)
+|++.+++||+. ...+...+. .+..+|.+ |+++|+++++++++++|++++.++.+|.+.+
T Consensus 90 ~Vl~~~~~~~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~ 156 (411)
T 3nnk_A 90 KVLVPVFGRFGHLLCEIARRCRA-------------EVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQP 156 (411)
T ss_dssp EEEEEECSHHHHHHHHHHHHTTC-------------EEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC
T ss_pred EEEEecCCchHHHHHHHHHHcCC-------------eEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceecc
Confidence 999999999983 222211111 12222222 8999999997435677777777777787765
Q ss_pred CHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEE--ecccCCCccceeeEEeCHHHHhhccCCC--
Q 012363 265 TKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTEKVASAINYGD-- 340 (465)
Q Consensus 265 ~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~~i~~~~~~~~-- 340 (465)
+++|+++|++||+++|+||+++ ++. ..+....++ +|+++ ++|+++++.++|++++++++++.+.+..
T Consensus 157 ----l~~i~~l~~~~~~~li~Dea~~-~~~--~~~~~~~~~--~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~ 227 (411)
T 3nnk_A 157 ----LAELGEICRRYDALFYTDATAS-LGG--NPLETDVWG--LDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCV 227 (411)
T ss_dssp ----CTTHHHHHHHHTCEEEEECTTT-BTT--BCCCTTTTT--CSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCC
T ss_pred ----HHHHHHHHHHcCCEEEEECCcc-cCC--cccchhccC--CcEEEecCccccCCCCceEEEEECHHHHHHHhhcccc
Confidence 8899999999999999999986 321 122233333 45654 5699887778999999999987765422
Q ss_pred ----------------------------------CcCCCCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHH
Q 012363 341 ----------------------------------HGSTFAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLK 383 (465)
Q Consensus 341 ----------------------------------~~~t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~ 383 (465)
....++.+..+++++.++++.+.+ ++..++++++.+++.+.|+
T Consensus 228 ~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~ 307 (411)
T 3nnk_A 228 EEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQ 307 (411)
T ss_dssp CGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 012234577888888888886643 3566677777777777776
Q ss_pred HHHHcCCCce-eeeccceEEEEEec--CChHHHHHHHHHC-CceEeecC---CCCEEEEec-CCCCcHHHHHHHHHHHHH
Q 012363 384 QKLARNPHVK-DVRGLGLIIGIEFD--VSATPVVDACRDS-GLLVLTAG---KGNVVRLVP-PLIISEQELDQAVEILCK 455 (465)
Q Consensus 384 ~~~~~~~~~~-~~~~~g~~~~i~~~--~~~~~~~~~l~~~-Gv~v~~~~---~~~~lRi~~-~~~~t~e~i~~~l~~l~~ 455 (465)
++ ...... .....+.++++.++ .+..++.+.|+++ ||.+.++. .++++|+++ ++..+++++++++++|++
T Consensus 308 ~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~ 385 (411)
T 3nnk_A 308 AM--GLETFGDLKHKMNNVLGVVIPQGINGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEA 385 (411)
T ss_dssp HT--TCCBCSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred Hc--CCEeCCCcccccccEEEEECCCCCCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHH
Confidence 63 222111 11224677778773 4677899999887 99998752 247899998 778899999999999999
Q ss_pred HHHHhh
Q 012363 456 TLPVLD 461 (465)
Q Consensus 456 ~l~~~~ 461 (465)
+++++.
T Consensus 386 ~l~~~~ 391 (411)
T 3nnk_A 386 VLNYLK 391 (411)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 998764
No 136
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.95 E-value=1.6e-26 Score=227.10 Aligned_cols=325 Identities=15% Similarity=0.130 Sum_probs=205.8
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCC-eEEecCCHHHHHHHHHHHHH
Q 012363 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFAD-RVFFSNTGTEANEAAIKFAR 176 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~v~~~~sG~eA~~~al~~a~ 176 (465)
..+|||.++. .++.+|+|++|+.+++.. +...+...+...+++++++++++.+ +|++++||++|+..++++++
T Consensus 7 ~~~id~~~~~----~~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~~~~ 80 (356)
T 1v72_A 7 PPALGFSSDN----IAGASPEVAQALVKHSSG--QAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMT 80 (356)
T ss_dssp CCCCBCSCGG----GCCCCHHHHHHHHHTTSS--CCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSC
T ss_pred CceEeeccCC----ccCCCHHHHHHHHhhccC--cccccccchHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHHHhc
Confidence 4689998763 367899999999987632 2222234566889999999998844 59999999999999998764
Q ss_pred HHhhhcCCCCCCCCceEEEEcCCcccCccc--ccccc-CCCCcCCCCCCCCCCceEeeCCCHHHHHh-hcCCC------C
Q 012363 177 KFQRHSNPDSKEPATEFVSFTNSFHGRTMG--ALALT-SKEHYRSPFEPVMPGVNFVEYGNIEATRK-LIQPG------K 246 (465)
Q Consensus 177 ~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~le~-~l~~~------~ 246 (465)
. +++.|++.+++|.+.... ..... +..... .+.. .. .-|+++|++ ++++. +
T Consensus 81 ~-----------~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~---v~~~-~~----~~d~~~l~~~~i~~~~~~~~~~ 141 (356)
T 1v72_A 81 P-----------PWGNIYCHPASHINNDECGAPEFFSNGAKLMT---VDGP-AA----KLDIVRLRERTREKVGDVHTTQ 141 (356)
T ss_dssp C-----------TTEEEEECTTSHHHHSSTTHHHHHTTSCEEEE---CCCG-GG----CCCHHHHHHHTTSSTTCTTSCE
T ss_pred C-----------CCCEEEEcCccchhhhhchHHHHHhCCcEEEE---ecCC-CC----eEcHHHHHHHhhhcchhhccCC
Confidence 1 578888887766443322 22221 211111 1110 00 128999999 88742 5
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC--CCCccccccccC--CcccEE--EecccCCCc
Q 012363 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG--RTGYLWAHEHYG--IFPDIM--TLAKPLAGG 320 (465)
Q Consensus 247 ~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g--r~g~~~~~~~~~--~~pdi~--t~sK~lg~G 320 (465)
+++|++++.+ ++|. +++.+++++|+++|++||++||+||+|..+. ..|.. ....+ ...|++ ++||+ |
T Consensus 142 ~~~v~~~~~~-~tG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~~~d~~~~s~sK~---g 214 (356)
T 1v72_A 142 PACVSITQAT-EVGS-IYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCS--PAEMTWKAGVDALSFGATKN---G 214 (356)
T ss_dssp EEEEEEESSC-TTSC-CCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC--TTTTTGGGTCCEEEECCGGG---T
T ss_pred ceEEEEEcCC-CCCc-cCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCC--HHHhhhhhcCCEEEEecccC---C
Confidence 7888888855 4665 5688999999999999999999999986431 11211 11111 124555 46787 3
Q ss_pred ccee--eEEeCHHHHhhccCC-CCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCcee-ee
Q 012363 321 LPIG--AALVTEKVASAINYG-DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKD-VR 396 (465)
Q Consensus 321 ~~iG--~v~~~~~i~~~~~~~-~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~ 396 (465)
.|+| ++++++++++.+... .+.++.... +..++.++++.++++ .+.+..+....+++.+.+.+.+++.+.. .+
T Consensus 215 ~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 291 (356)
T 1v72_A 215 VLAAEAIVLFNTSLATEMSYRRKRAGHLSSK--MRFLSAQIDAYLTDD-LWLRNARKANAAAQRLAQGLEGLGGVEVLGG 291 (356)
T ss_dssp CSSCEEEEESSGGGHHHHHHHHHHTTCCCSS--THHHHHHHHHHTSTT-HHHHHHHHHHHHHHHHHHHHTTCTTEEEESC
T ss_pred CcCccEEEEECHHHHhhHHHHhhccCchhhh--HHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhhCCCcEEccC
Confidence 3666 777888887766432 111222221 123333445555442 2222233333334444444444443332 23
Q ss_pred ccceEEEEEecCChHHHHHHHHHCCceEeecCC-CCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012363 397 GLGLIIGIEFDVSATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 397 ~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
..+.++++.++ .++.+.|.++||.+.++.. ++++|+++++.++++++++++++|++++++.
T Consensus 292 ~~~~~~~~~~~---~~~~~~l~~~gi~v~~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~ 353 (356)
T 1v72_A 292 TEANILFCRLD---SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLAADRT 353 (356)
T ss_dssp CCSSEEEEEEC---HHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHTC---
T ss_pred CCccEEEEEcC---HHHHHHHHhcCeEEeccccCCCeEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 45667777763 4789999999999986532 4789999999999999999999999887664
No 137
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.95 E-value=1.5e-25 Score=231.66 Aligned_cols=325 Identities=15% Similarity=0.081 Sum_probs=210.6
Q ss_pred CCCHHHHHHHHHHHhhcccc--cCCCCC----HHHHHHHHHHHhhcCC----CeE--EecCCHHHHHHHHHHHHHHHhhh
Q 012363 114 HGDADWIKAVVDQANVLTHV--SNMYYS----IPQIELAKRLVACSFA----DRV--FFSNTGTEANEAAIKFARKFQRH 181 (465)
Q Consensus 114 h~~p~v~~a~~~~~~~~~~~--~~~~~~----~~~~~la~~l~~~~~~----~~v--~~~~sG~eA~~~al~~a~~~t~~ 181 (465)
|.++.+.+++.+++...... ...... ..+.++++++++.++. +++ ++++||++|+..++++++...+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~ 186 (514)
T 3mad_A 107 HGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARA 186 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhh
Confidence 35677777777766543211 111111 2255677888888883 577 99999999999999999865421
Q ss_pred cCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC-----CHHHHHhhcCCCCeEEEEEcccC
Q 012363 182 SNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPGKTAAVFVEPIQ 256 (465)
Q Consensus 182 ~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~a~vi~ep~~ 256 (465)
..+ .++++|++..++|+++...+...+. ++..+|.+ |+++|++++++ ++++|++++.+
T Consensus 187 ~~g---~~~d~Vi~~~~~~~~~~~~~~~~G~-------------~v~~v~~~~~~~~d~~~Le~~i~~-~~~~v~~~~~~ 249 (514)
T 3mad_A 187 TKG---ITAPEAVVPVSAHAAFDKAAQYFGI-------------KLVRTPLDADYRADVAAMREAITP-NTVVVAGSAPG 249 (514)
T ss_dssp HHC---CSSCEEEEETTSCTHHHHHHHHHTC-------------EEEEECBCTTSCBCHHHHHHHCCT-TEEEEEEETTC
T ss_pred hcC---CCCCeEEEeCccchHHHHHHHHcCC-------------eeEEeeeCCCCCCCHHHHHHHhcc-CCEEEEEeCCC
Confidence 100 1247999999999886644433321 12233332 89999999975 57788887777
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC-----CCCc---cccccccCCcccEEEecccCCCccceeeEEe
Q 012363 257 GEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG-----RTGY---LWAHEHYGIFPDIMTLAKPLAGGLPIGAALV 328 (465)
Q Consensus 257 ~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g-----r~g~---~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~ 328 (465)
+++|.+.+ +++|+++|++||++||+||+|.++. +.|. .+.....++...+.+++|++.+|.++|++++
T Consensus 250 nptG~~~~----l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~ 325 (514)
T 3mad_A 250 YPHGVVDP----IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILY 325 (514)
T ss_dssp TTTCCCCC----HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEE
T ss_pred CCCccccC----HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEE
Confidence 77777765 8999999999999999999999862 2332 2233334543333345699888899999998
Q ss_pred CHHHHhhccCC--------------CCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCcee
Q 012363 329 TEKVASAINYG--------------DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKD 394 (465)
Q Consensus 329 ~~~i~~~~~~~--------------~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 394 (465)
+++.+...... ..++.+..+.+++.+++..+.....+++.+++.++.+++++.|++ .+.+..
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~~ 401 (514)
T 3mad_A 326 RRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRA----IPSLKI 401 (514)
T ss_dssp SSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----STTCEE
T ss_pred eCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh----CCCeEE
Confidence 87655432210 011122222344444444443222244566666666666666554 443333
Q ss_pred eeccceEEEEEec-CChHHHHHHHHHCCceEeecCCCCEEEEecC-CCCcHHHHHHHHHHHHHHHHHhhhc
Q 012363 395 VRGLGLIIGIEFD-VSATPVVDACRDSGLLVLTAGKGNVVRLVPP-LIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 395 ~~~~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~-~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
+.....++++..+ .+..++.+.|.++||.+.....++.+|+++. ...+++++++++++|++++++++++
T Consensus 402 ~~~~~~~~~~~~~~~~~~~l~~~L~~~Gi~v~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~~ 472 (514)
T 3mad_A 402 LGDPLWVIAVASDELNIYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRAH 472 (514)
T ss_dssp SSCCSSEEEEECSSSCHHHHHHHHHTTTCBCEEETTTTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHHC
T ss_pred eCCCeEEEEEeCCCCCHHHHHHHHHhcCCEeccCCCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 3233446666653 4678899999999998854443578999987 4456799999999999999887654
No 138
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.95 E-value=1.3e-26 Score=236.63 Aligned_cols=340 Identities=14% Similarity=0.125 Sum_probs=214.9
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHH
Q 012363 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFA 175 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a 175 (465)
.|+.||||.++.++ |.|++++.+++..... .+.+.+...+++++++++++.++|+||+||++|++++++++
T Consensus 41 ~g~~ylD~~~~~~~-------~~v~~a~~~~~~~~~~--~y~~~~~~~~l~~~la~~~~~~~v~~t~ggt~A~~~al~~~ 111 (467)
T 1ax4_A 41 SSAVYIDLLTDSGT-------NAMSDHQWAAMITGDE--AYAGSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVL 111 (467)
T ss_dssp GGGCSEECSCSSSC-------CCEEHHHHHHHHTCCC--CSSSCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHH
T ss_pred CCceeeecccCcCC-------HHHHHHHHHHHhhccc--ccccCccHHHHHHHHHHHcCCCcEEEcCCcHHHHHHHHHHH
Confidence 46789999887653 6788888887764322 22345667899999999999899999999999999999998
Q ss_pred HHHhhhcCCCCCCCCce---EEEEcCCcccCccccccccCCCCcCCCCC-CCCCCceEeeC---CCHHHHHhhcCC---C
Q 012363 176 RKFQRHSNPDSKEPATE---FVSFTNSFHGRTMGALALTSKEHYRSPFE-PVMPGVNFVEY---GNIEATRKLIQP---G 245 (465)
Q Consensus 176 ~~~t~~~~~~~~~~~~~---ii~~~~~yhg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~d~~~le~~l~~---~ 245 (465)
+.+... +++. ||+. ..+|+.+...+...+......... ..... ...++ .|+++|+++++. .
T Consensus 112 ~~~~~~-------~Gd~~~~viv~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~d~~~le~~i~~~~~~ 182 (467)
T 1ax4_A 112 LKYKQK-------EGKAKNPVFIS-NFHFDTTAAHVELNGCKAINIVTEKAFDSE-TYDDWKGDFDIKKLKENIAQHGAD 182 (467)
T ss_dssp HHHHHH-------TTCCSSCEEEE-SSCCHHHHHHHHHTTCEEEECBCGGGGCTT-SCCTTTTCBCHHHHHHHHHHHCGG
T ss_pred HHhhcc-------CCCccceEEEe-ccccchhhHHHhccCCceeccccccccccc-ccCCcccccCHHHHHHHHHhcCCC
Confidence 754210 2555 7776 333344333333222211110000 00000 00112 289999999973 3
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC---C-------CCCCccccccccC----CcccEE
Q 012363 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG---L-------GRTGYLWAHEHYG----IFPDIM 311 (465)
Q Consensus 246 ~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g---~-------gr~g~~~~~~~~~----~~pdi~ 311 (465)
++++|+++++++++|..+++.+++++|+++|++||++||+||++.. + +..|.. ..... ..+|++
T Consensus 183 ~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~ 260 (467)
T 1ax4_A 183 NIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNAT--IKEVIFDMYKYADAL 260 (467)
T ss_dssp GEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCC--HHHHHHHHGGGCSEE
T ss_pred CeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCc--hhhhhhhhccccceE
Confidence 6889999988777755677899999999999999999999998652 0 222211 00000 124665
Q ss_pred --EecccCCCccce-eeEEeC-H-HHHhhccCC----CCcCCCCChHHHH-HHHHHHHHHhcCchHHHHHHHHHHHHHHH
Q 012363 312 --TLAKPLAGGLPI-GAALVT-E-KVASAINYG----DHGSTFAGSPLVC-NAAIAVLDKISNPAFLASVSKKGHYFKET 381 (465)
Q Consensus 312 --t~sK~lg~G~~i-G~v~~~-~-~i~~~~~~~----~~~~t~~~~~~~~-~aa~a~L~~~~~~~~~~~~~~~~~~l~~~ 381 (465)
++||+++ .|+ |+++++ + ++++.+... ....++++++..+ +++.++|+...+++..++..++.+++++.
T Consensus 261 ~~s~sK~~g--~~~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~ 338 (467)
T 1ax4_A 261 TMSAKKDPL--LNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDR 338 (467)
T ss_dssp EEETTSTTC--CSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeccccCC--CCcceEEEeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 4567664 465 455566 6 777655321 1122344433333 33333676554444566666777778777
Q ss_pred HHHHHHcCCCceeeeccceEEEEE-------ec---CChHHHHHHH-HHCCceEeecC----------------CCCEEE
Q 012363 382 LKQKLARNPHVKDVRGLGLIIGIE-------FD---VSATPVVDAC-RDSGLLVLTAG----------------KGNVVR 434 (465)
Q Consensus 382 l~~~~~~~~~~~~~~~~g~~~~i~-------~~---~~~~~~~~~l-~~~Gv~v~~~~----------------~~~~lR 434 (465)
|++ ..++.. .+..|.++++. +. .+..++++.| .++||.+.+.+ ..+++|
T Consensus 339 L~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iR 414 (467)
T 1ax4_A 339 LRE--AGIPIQ--YPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMR 414 (467)
T ss_dssp HHH--TTCCBC--SSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEE
T ss_pred HHh--CCCCcc--cCCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEE
Confidence 766 233322 23346667776 31 1356788988 88999998721 026899
Q ss_pred EecC-CCCcHHHHHHHHHHHHHHHHHhh
Q 012363 435 LVPP-LIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 435 i~~~-~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
|+++ ..+|++++++++++|++++++++
T Consensus 415 ls~~~~~~t~e~i~~~~~~l~~~~~~~~ 442 (467)
T 1ax4_A 415 LTIARRVYTNDHMDYIADALIGLKEKFA 442 (467)
T ss_dssp EECCTTSSCHHHHHHHHHHHHTTHHHHT
T ss_pred EecccccCCHHHHHHHHHHHHHHHHhhh
Confidence 9998 55899999999999999988754
No 139
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.95 E-value=9.9e-27 Score=233.08 Aligned_cols=328 Identities=16% Similarity=0.138 Sum_probs=214.2
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhh-ccccc--CCC--CCHH---HHH-HHHHHHhhcCCCeE-EecCCHHHH
Q 012363 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANV-LTHVS--NMY--YSIP---QIE-LAKRLVACSFADRV-FFSNTGTEA 167 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~-~~~~~--~~~--~~~~---~~~-la~~l~~~~~~~~v-~~~~sG~eA 167 (465)
++|||+.++... + +|.|++|+.+++.+ ..+.+ ..+ ..+. .++ .+++++++++.+.. +++++|++|
T Consensus 23 ~~~i~~~~~~~~--~---~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~~i~~~sGt~a 97 (407)
T 2dkj_A 23 REGLELIASENF--V---SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWANVQPHSGSQA 97 (407)
T ss_dssp HTSEECCTTCCC--C---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHH
T ss_pred hcceeeccCCCC--C---CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcceEEecchHHH
Confidence 357898888653 3 89999999998864 22211 111 2222 222 22488888885443 566778999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcc--ccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCC
Q 012363 168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTM--GALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG 245 (465)
Q Consensus 168 ~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~ 245 (465)
+..+++++. .++++|++.+++|+++.. ..+...+......++ +..+.. ...|+++|++++++.
T Consensus 98 ~~~~~~~~~-----------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~---~~~d~~~l~~~l~~~ 162 (407)
T 2dkj_A 98 NMAVYMALM-----------EPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSY-GVRPDT---ELIDLEEVRRLALEH 162 (407)
T ss_dssp HHHHHHHHC-----------CTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEE-CCCTTT---SSCCHHHHHHHHHHH
T ss_pred HHHHHHHhc-----------CCCCEEEEecccccCccchHHHHHhcCceEEEEec-CCCccc---CccCHHHHHHHHhhc
Confidence 999999774 158899999999988742 222221110000000 000000 113899999998632
Q ss_pred CeEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC-CCCCCccccccccCCcccEE--EecccCCCcc
Q 012363 246 KTAAVFV-EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG-LGRTGYLWAHEHYGIFPDIM--TLAKPLAGGL 321 (465)
Q Consensus 246 ~~a~vi~-ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g-~gr~g~~~~~~~~~~~pdi~--t~sK~lg~G~ 321 (465)
++++|++ +|+++ ...+ +++|.++|++||++||+||+|++ +...|.... ..+ .+|++ ++||+++ |.
T Consensus 163 ~~~~v~~~~p~~~---~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~-~~di~~~s~sK~l~-g~ 231 (407)
T 2dkj_A 163 RPKVIVAGASAYP---RFWD----FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPN--PLP-YAHVVTSTTHKTLR-GP 231 (407)
T ss_dssp CCSEEEECCSSCC---SCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCC--CTT-TCSEEEEESSGGGC-CC
T ss_pred CCeEEEEeccccC---CCCC----HHHHHHHHHHcCCEEEEEccccccccccCccCC--ccc-cccEEEEeccccCC-CC
Confidence 4566666 67765 3333 89999999999999999999985 422332211 111 25776 7899887 56
Q ss_pred ceeeEEeC-HHHHhhccCC-CCcCCCCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCceeee
Q 012363 322 PIGAALVT-EKVASAINYG-DHGSTFAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKDVR 396 (465)
Q Consensus 322 ~iG~v~~~-~~i~~~~~~~-~~~~t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 396 (465)
++|+++++ +++++.+... ....+.+.++..++++.++|+.+.. +++.++++++.+++.+.|++. .++... .+
T Consensus 232 ~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~-~~ 308 (407)
T 2dkj_A 232 RGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR--GYRIVT-GG 308 (407)
T ss_dssp SCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--TCEEGG-GS
T ss_pred CceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC--Cceeec-CC
Confidence 78999999 8988877542 2333344567677777788876533 455666666777776666653 222111 13
Q ss_pred ccceEEEEEecC---ChHHHHHHHHHCCceEeecC---------CCCEEEEecCC----CCcHHHHHHHHHHHHHHHHH
Q 012363 397 GLGLIIGIEFDV---SATPVVDACRDSGLLVLTAG---------KGNVVRLVPPL----IISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 397 ~~g~~~~i~~~~---~~~~~~~~l~~~Gv~v~~~~---------~~~~lRi~~~~----~~t~e~i~~~l~~l~~~l~~ 459 (465)
+.|.++++.+.. +..++.+.|.++||.+.++. .++.+|++++. .++++++++++++|++++++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 309 TDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp CSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred CCceEEEEECcccCCCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 568888888842 57789999999999998752 13679998865 37999999999999999877
No 140
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.95 E-value=2.5e-26 Score=229.85 Aligned_cols=310 Identities=15% Similarity=0.095 Sum_probs=207.3
Q ss_pred CHHHHHHHHHHHh-hcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEE
Q 012363 116 DADWIKAVVDQAN-VLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFV 194 (465)
Q Consensus 116 ~p~v~~a~~~~~~-~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii 194 (465)
.+.+.+++..+.. ...+.+..+.++...+++++++++++.+.+++++||++|+..+++.+. .++++|+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~~-----------~~gd~vi 107 (398)
T 2rfv_A 39 FDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLC-----------QQGDHIV 107 (398)
T ss_dssp CSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEE
T ss_pred cCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-----------CCCCEEE
Confidence 3455555542111 122334455677899999999999997788888999999999999764 1588999
Q ss_pred EEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHH
Q 012363 195 SFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRD 274 (465)
Q Consensus 195 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~ 274 (465)
+.+++||+.......... .....+..+|.+|++++++++++ ++++|++++.++++|.+.+ +++|.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~---------~~g~~~~~v~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~----l~~i~~ 173 (398)
T 2rfv_A 108 SASAIYGCTHAFLSHSMP---------KFGINVRFVDAAKPEEIRAAMRP-ETKVVYIETPANPTLSLVD----IETVAG 173 (398)
T ss_dssp EESSSCHHHHHHHHTHHH---------HTTCEEEEECTTSHHHHHHHCCT-TEEEEEEESSBTTTTBCCC----HHHHHH
T ss_pred EcCCCcccHHHHHHHHHH---------HcCCEEEEeCCCCHHHHHHhcCC-CCeEEEEECCCCCCCcccC----HHHHHH
Confidence 999999987654311100 01123455677799999999975 6788888888777787765 999999
Q ss_pred HHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCC-ccce-eeEEeCHHHHh-hccCCCCcC-CCCChHH
Q 012363 275 ACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAG-GLPI-GAALVTEKVAS-AINYGDHGS-TFAGSPL 350 (465)
Q Consensus 275 l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~-G~~i-G~v~~~~~i~~-~~~~~~~~~-t~~~~~~ 350 (465)
+|++||+++|+||+|..+ ..+... .++....+.++||++++ |+|+ |++++++++++ .+.+..... +.+.+++
T Consensus 174 l~~~~~~~li~De~~~~~-~~~~~~---~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (398)
T 2rfv_A 174 IAHQQGALLVVDNTFMSP-YCQQPL---QLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPF 249 (398)
T ss_dssp HHHHTTCEEEEECTTTCT-TTCCGG---GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHH
T ss_pred HHHHcCCEEEEECCCccc-ccCCch---hhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHhCCCCCCCHH
Confidence 999999999999999843 222221 23433444678999986 7898 99999998876 555433333 4577899
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH----------HHcCCCceee----eccceEEEEEecCC---hHHH
Q 012363 351 VCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQK----------LARNPHVKDV----RGLGLIIGIEFDVS---ATPV 413 (465)
Q Consensus 351 ~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~----------~~~~~~~~~~----~~~g~~~~i~~~~~---~~~~ 413 (465)
.++++.++|+.+ +...++..++.+.+.+.|++. +..+|.+... ++.|.++++++... ...+
T Consensus 250 ~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l 327 (398)
T 2rfv_A 250 NAWLTLRGVKTL--GIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRM 327 (398)
T ss_dssp HHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHH
T ss_pred HHHHHHhhhhhH--HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCHHHHHHH
Confidence 999998888643 233455555666655555432 1111211111 24688888888422 2223
Q ss_pred HHHHHHCCceEeec-------------------------C-CCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012363 414 VDACRDSGLLVLTA-------------------------G-KGNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 414 ~~~l~~~Gv~v~~~-------------------------~-~~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
.+.+...|+.+.++ + ..+.+|++++...+++++++++++|+++
T Consensus 328 ~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 328 INSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp HTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence 33333345554433 1 1378999999999999999988888653
No 141
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.95 E-value=1.3e-25 Score=222.32 Aligned_cols=322 Identities=13% Similarity=0.098 Sum_probs=214.5
Q ss_pred EEecccCcccccCCCCCHHHHHHHHHHHhhcccccCC-C-----CCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHH
Q 012363 100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM-Y-----YSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAA 171 (465)
Q Consensus 100 ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~-~-----~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~a 171 (465)
|+|+.++ +..+|.+++++.+++.+....... + ..+...+++++++++++ .++|++++||++|+..+
T Consensus 3 yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~ 76 (382)
T 4hvk_A 3 YFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLA 76 (382)
T ss_dssp BCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHH
T ss_pred eecCCCc------CCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHH
Confidence 6777654 347899999999998763211111 1 12336689999999987 56899999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccc--cCCCCcCCCCCCCCCCceEeeC-----CCHHHHHhhcCC
Q 012363 172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL--TSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQP 244 (465)
Q Consensus 172 l~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~ 244 (465)
++.+..... .+++.|++.++.|++.......+ .+. .+..+|. .|+++|++++++
T Consensus 77 ~~~~~~~~~-------~~gd~vi~~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~d~~~l~~~i~~ 137 (382)
T 4hvk_A 77 IIGYAMRNA-------RKGKHILVSAVEHMSVINPAKFLQKQGF------------EVEYIPVGKYGEVDVSFIDQKLRD 137 (382)
T ss_dssp HHHHHHHHG-------GGCCEEEEETTCCHHHHHHHHHHHHTTC------------EEEEECBCTTSCBCHHHHHHHCCT
T ss_pred HHHhhhhhc-------CCCCEEEECCCCcHHHHHHHHHHHhcCC------------EEEEeccCCCCCcCHHHHHHHhcc
Confidence 997752111 15889999999998776543322 111 1122222 289999999975
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE--EecccCCCccc
Q 012363 245 GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLP 322 (465)
Q Consensus 245 ~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~G~~ 322 (465)
++++|++++.++.+|.+.+ +++|.++|++||+ +|+||+|+ +|.. .......+ +|++ +++|.+| +.+
T Consensus 138 -~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~-li~D~a~~-~~~~--~~~~~~~~--~d~~~~s~~K~~g-~~g 205 (382)
T 4hvk_A 138 -DTILVSVQHANNEIGTIQP----VEEISEVLAGKAA-LHIDATAS-VGQI--EVDVEKIG--ADMLTISSNDIYG-PKG 205 (382)
T ss_dssp -TEEEEECCSBCTTTCBBCC----HHHHHHHHSSSSE-EEEECTTT-BTTB--CCCHHHHT--CSEEEEESGGGTS-CTT
T ss_pred -CceEEEEECCCCCceeeCC----HHHHHHHHHHcCE-EEEEhHHh-cCCC--CCCchhcC--CCEEEEeHHHhcC-CCc
Confidence 5778888887777787765 8899999999999 99999986 3221 11222233 4555 5679654 334
Q ss_pred eeeEEeCHHHHhhccCCCCc-------CCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceee
Q 012363 323 IGAALVTEKVASAINYGDHG-------STFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDV 395 (465)
Q Consensus 323 iG~v~~~~~i~~~~~~~~~~-------~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 395 (465)
+|+++++++. .+.+...+ ...+.++..++++.++++.+.+ ..++..+....+++.+.+.+..++.+...
T Consensus 206 ~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 281 (382)
T 4hvk_A 206 VGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAM--EWREEAERLRRLRDRIIDNVLKIEESYLN 281 (382)
T ss_dssp CEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTSTTEEEC
T ss_pred eEEEEEcCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Confidence 7888877654 23222111 1334577788888888875432 33344444444444444444455433322
Q ss_pred ec----cceEEEEEec-CChHHHHHHHHHCCceEeecCC----------------------CCEEEEecCCCCcHHHHHH
Q 012363 396 RG----LGLIIGIEFD-VSATPVVDACRDSGLLVLTAGK----------------------GNVVRLVPPLIISEQELDQ 448 (465)
Q Consensus 396 ~~----~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~~----------------------~~~lRi~~~~~~t~e~i~~ 448 (465)
.. .+.++.+.+. .+..++.+.|.++||.+.++.. .+++|++++..+|++++++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~ 361 (382)
T 4hvk_A 282 GHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDR 361 (382)
T ss_dssp SCSSSBCTTEEEEEETTCCHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHH
T ss_pred CCccccCCCEEEEEECCCCHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHH
Confidence 21 2346666663 4678899999999999986520 3789999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 012363 449 AVEILCKTLPVLDS 462 (465)
Q Consensus 449 ~l~~l~~~l~~~~~ 462 (465)
++++|+++++++++
T Consensus 362 ~~~~l~~~~~~~~~ 375 (382)
T 4hvk_A 362 LLEVLPGVIERLRS 375 (382)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988764
No 142
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.94 E-value=1.1e-26 Score=237.25 Aligned_cols=339 Identities=16% Similarity=0.134 Sum_probs=227.2
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccc----ccCC---CCCHHHHHHHHHHHhhcC--CCeEEecCCHHH
Q 012363 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH----VSNM---YYSIPQIELAKRLVACSF--ADRVFFSNTGTE 166 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~----~~~~---~~~~~~~~la~~l~~~~~--~~~v~~~~sG~e 166 (465)
++..|+|.. ++|+.++.+.+++.+++..+.. ++.. .......+++++++++++ .++|++++|+++
T Consensus 66 ~~~iyld~~------~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~ 139 (465)
T 3e9k_A 66 ENAIYFLGN------SLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTV 139 (465)
T ss_dssp CBCEECBTT------TSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHH
T ss_pred CCeEEecCC------ccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHH
Confidence 355677632 4687788888888887754321 1111 112335678889999887 579999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccc---ccCCCCcC--CCCCCCCCCceEeeCCCHHHHHhh
Q 012363 167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA---LTSKEHYR--SPFEPVMPGVNFVEYGNIEATRKL 241 (465)
Q Consensus 167 A~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~d~~~le~~ 241 (465)
++..+++.+.... .++++||+.+++||+....... ..+..... ....+...+.. -|+++|+++
T Consensus 140 al~~~~~~~~~~~--------~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~----~d~~~l~~~ 207 (465)
T 3e9k_A 140 NLHLLMLSFFKPT--------PKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEET----LRIEDILEV 207 (465)
T ss_dssp HHHHHHHHHCCCC--------SSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSS----CCHHHHHHH
T ss_pred HHHHHHHHhcccc--------CCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCc----cCHHHHHHH
Confidence 9999998764211 1467799999999986543322 11111000 00001111111 179999999
Q ss_pred cC--CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE--EecccC
Q 012363 242 IQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPL 317 (465)
Q Consensus 242 l~--~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~l 317 (465)
++ ..++++|+++++++.+|.+.+ +++|.++|++||+++|+|++|+ .|.. ......++ .|++ +++|.+
T Consensus 208 i~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~la~~~g~~vi~D~a~~-~g~~--~~~~~~~~--~D~~~~s~~K~l 278 (465)
T 3e9k_A 208 IEKEGDSIAVILFSGVHFYTGQHFN----IPAITKAGQAKGCYVGFDLAHA-VGNV--ELYLHDWG--VDFACWCSYKYL 278 (465)
T ss_dssp HHHHGGGEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS--CCCHHHHT--CCEEEECSSSTT
T ss_pred HHhcCCCeEEEEEeCcccCcceeec----HHHHHHHHHHcCCEEEEEhhhh-cCCc--CCchhhcC--CCEEEECccccc
Confidence 96 246889998888888888776 8999999999999999999987 3222 12222333 4655 466999
Q ss_pred CCc-cceeeEEeCHHHHhhccCCCCc---C------------C----------CCChHHHHHHHHHHHHHhcC---chHH
Q 012363 318 AGG-LPIGAALVTEKVASAINYGDHG---S------------T----------FAGSPLVCNAAIAVLDKISN---PAFL 368 (465)
Q Consensus 318 g~G-~~iG~v~~~~~i~~~~~~~~~~---~------------t----------~~~~~~~~~aa~a~L~~~~~---~~~~ 368 (465)
++| .++|++++++++.+.+.+...+ + + .+.+++++++..++++.+.+ +.+.
T Consensus 279 ~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~ 358 (465)
T 3e9k_A 279 NAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALR 358 (465)
T ss_dssp CCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred ccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHH
Confidence 644 5789999999987766543211 1 0 14567888888888887643 4566
Q ss_pred HHHHHHHHHHHHHHHHHHHc------CCCcee-----eeccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEec
Q 012363 369 ASVSKKGHYFKETLKQKLAR------NPHVKD-----VRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVP 437 (465)
Q Consensus 369 ~~~~~~~~~l~~~l~~~~~~------~~~~~~-----~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~ 437 (465)
++..++.+++.+.|++.+.. .+.+.. ....|.++++.++....++.+.|.++||.+...+. +++||++
T Consensus 359 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~-~~iRis~ 437 (465)
T 3e9k_A 359 KKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSVPNKDVFQELEKRGVVCDKRNP-NGIRVAP 437 (465)
T ss_dssp HHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECCTTCCHHHHHHTTTEECEEETT-TEEEEBC
T ss_pred HHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecCCHHHHHHHHHHCCEEEecCCC-CEEEEeC
Confidence 67777777777777664211 022222 22348888888864556799999999999986654 8999998
Q ss_pred -CCCCcHHHHHHHHHHHHHHHHHhhh
Q 012363 438 -PLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 438 -~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
++.+|++|+++++++|++++++..+
T Consensus 438 ~~~~~t~edi~~~~~~l~~~l~~~~~ 463 (465)
T 3e9k_A 438 VPLYNSFHDVYKFTNLLTSILDSAET 463 (465)
T ss_dssp CTTTCCHHHHHHHHHHHHHHHTC---
T ss_pred cccCCCHHHHHHHHHHHHHHHHhccc
Confidence 8999999999999999999876543
No 143
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.94 E-value=1.9e-25 Score=221.68 Aligned_cols=325 Identities=14% Similarity=0.100 Sum_probs=215.3
Q ss_pred EEecccCcccccCCCCCHHHHHHHHHHHhhcccc-cCCCC-----CHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHH
Q 012363 100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV-SNMYY-----SIPQIELAKRLVACSF--ADRVFFSNTGTEANEAA 171 (465)
Q Consensus 100 ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~-~~~~~-----~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~a 171 (465)
|+|+.++ |+.+|.|++++.+++...... ...+. .+...+++++++++++ .++|++++||++|+..+
T Consensus 3 yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~ 76 (382)
T 4eb5_A 3 YFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLA 76 (382)
T ss_dssp BCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHH
T ss_pred eeccCCC------CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHH
Confidence 7787664 468999999999988752111 11121 2347789999999988 46999999999999999
Q ss_pred HHHHHHHh-hhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC-----CCHHHHHhhcCCC
Q 012363 172 IKFARKFQ-RHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPG 245 (465)
Q Consensus 172 l~~a~~~t-~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~ 245 (465)
++.+..+. . +++.|++.+++|++.......+.. .. ..+..+|. .|+++|++++++
T Consensus 77 ~~~l~~~~~~--------~gd~Vl~~~~~~~~~~~~~~~~~~-~g---------~~~~~v~~~~~~~~d~~~l~~~i~~- 137 (382)
T 4eb5_A 77 IIGYAMRNAR--------KGKHILVSAVEHMSVINPAKFLQK-QG---------FEVEYIPVGKYGEVDVSFIDQKLRD- 137 (382)
T ss_dssp HHHHHHHHGG--------GCCEEEEETTCCHHHHHHHHHHTT-TT---------CEEEEECBCTTSCBCHHHHHHHCCT-
T ss_pred HHHHHhhccC--------CCCEEEECCCcchHHHHHHHHHHh-CC---------cEEEEeccCCCCccCHHHHHHHhcC-
Confidence 99876321 2 578999999999877544332110 00 11122221 289999999975
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE--EecccCCCccce
Q 012363 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPI 323 (465)
Q Consensus 246 ~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~G~~i 323 (465)
++++|+++..++++|.+.+ +++|.++|++||++ |+||+|. +|.. ......+ .+|++ +++|.+|. .++
T Consensus 138 ~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~-i~D~a~~-~g~~--~~~~~~~--~~di~~~s~sK~~g~-~g~ 206 (382)
T 4eb5_A 138 DTILVSVQHANNEIGTIQP----VEEISEVLAGKAAL-HIDATAS-VGQI--EVDVEKI--GADMLTISSNDIYGP-KGV 206 (382)
T ss_dssp TEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSEE-EEECTTT-BTTB--CCCHHHH--TCSEEEEETGGGTCC-SSC
T ss_pred CCeEEEEeccCCCccccCC----HHHHHHHHHHCCCE-EEEcchh-cCCc--ccCcccc--CCCEEEeehHHhcCC-Cce
Confidence 5778888777777777665 89999999999999 9999997 4422 1122222 35665 56797553 237
Q ss_pred eeEEeCHHH-HhhccCC----CCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeec-
Q 012363 324 GAALVTEKV-ASAINYG----DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRG- 397 (465)
Q Consensus 324 G~v~~~~~i-~~~~~~~----~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~- 397 (465)
|+++++++. +..+... ......+.++..+.++.++++.+.+ .++++.+....+++.+.+.+.++|.+.....
T Consensus 207 G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 284 (382)
T 4eb5_A 207 GALWIRKEAKLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAM--EWREEAERLRRLRDRIIDNVLKIEESYLNGHP 284 (382)
T ss_dssp EEEEEETTCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTSTTEEECSCS
T ss_pred EEEEEccccccCceecCCCccccccCCCccHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCc
Confidence 899888763 2211110 0112234566777777778876543 1333344444444444444444443322222
Q ss_pred ---cceEEEEEec-CChHHHHHHHHHCCceEeecCC----------------------CCEEEEecCCCCcHHHHHHHHH
Q 012363 398 ---LGLIIGIEFD-VSATPVVDACRDSGLLVLTAGK----------------------GNVVRLVPPLIISEQELDQAVE 451 (465)
Q Consensus 398 ---~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~~----------------------~~~lRi~~~~~~t~e~i~~~l~ 451 (465)
.+.++++.+. .+..++.+.|.++||.+.++.. .+++|++++..+++++++++++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~ 364 (382)
T 4eb5_A 285 EKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLE 364 (382)
T ss_dssp SSBCTTEEEEEETTSCHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHH
T ss_pred ccCCCCEEEEEeCCcCHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHH
Confidence 2567777773 4677899999999999987531 3689999988889999999999
Q ss_pred HHHHHHHHhhh
Q 012363 452 ILCKTLPVLDS 462 (465)
Q Consensus 452 ~l~~~l~~~~~ 462 (465)
+|+++++++++
T Consensus 365 ~l~~~~~~~~~ 375 (382)
T 4eb5_A 365 VLPGVIERLRS 375 (382)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 144
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.94 E-value=4e-26 Score=227.60 Aligned_cols=330 Identities=12% Similarity=0.074 Sum_probs=217.2
Q ss_pred CCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CC-eEEecCCHHHHHHHH
Q 012363 95 AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--AD-RVFFSNTGTEANEAA 171 (465)
Q Consensus 95 ~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~-~v~~~~sG~eA~~~a 171 (465)
.+|+.|+|..+. ++ .+|++++++.+++.. +. ..+......+++++++++++ .+ +|++++||++|+..+
T Consensus 16 ~~~~~~~~~~g~-----~~-~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~ 86 (393)
T 2huf_A 16 VTPNKLLMGPGP-----SN-APQRVLDAMSRPILG--HL-HPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEAT 86 (393)
T ss_dssp CCCCCEECSSSC-----CC-CCHHHHHHTTSCCCC--TT-SHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHH
T ss_pred CCCCeEEecCCC-----CC-CCHHHHHHHHhhhcc--CC-CHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHH
Confidence 356777765443 22 678999988776543 11 11223447889999999987 33 799999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccc-cccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEE
Q 012363 172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL-ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV 250 (465)
Q Consensus 172 l~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~v 250 (465)
++.+. .++++|++.+++||+...... ...+.... +.+...+. ..|+++|++++++.++++|
T Consensus 87 ~~~~~-----------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~---~v~~~~~~----~~d~~~l~~~i~~~~~~~v 148 (393)
T 2huf_A 87 LCNLL-----------EDGDVILIGHTGHWGDRSADMATRYGADVR---VVKSKVGQ----SLSLDEIRDALLIHKPSVL 148 (393)
T ss_dssp HHHHC-----------CTTCEEEEEESSHHHHHHHHHHHHTTCEEE---EEECCTTC----CCCHHHHHHHHHHHCCSEE
T ss_pred HHHHh-----------CCCCEEEEECCCcchHHHHHHHHHcCCeeE---EEeCCCCC----CCCHHHHHHHHhccCCcEE
Confidence 99764 158899999999998431111 11111100 01111111 1389999999864135666
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEE--ecccCCCccceeeEEe
Q 012363 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALV 328 (465)
Q Consensus 251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~ 328 (465)
++++.++++|.+.+ +++|.++|++||++||+||+++ +|.. ...... ..+|+++ ++|+++|+.++|++++
T Consensus 149 ~~~~~~nptG~~~~----l~~i~~~~~~~~~~li~D~a~~-~~~~--~~~~~~--~~~d~~~~s~sK~l~g~~G~G~~~~ 219 (393)
T 2huf_A 149 FLTQGDSSTGVLQG----LEGVGALCHQHNCLLIVDTVAS-LGGA--PMFMDR--WEIDAMYTGSQKVLGAPPGITPVSF 219 (393)
T ss_dssp EEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTB--CCCTTT--TTCSEEECCSSSTTCCCSSCEEEEE
T ss_pred EEEccCCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCC--Ccchhh--cCccEEEECCCcccccCCCeEEEEE
Confidence 66666666677655 8899999999999999999986 4322 112222 2467775 4599876445599999
Q ss_pred CHHHHhhccCCC----------------------CcCC-CCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHH
Q 012363 329 TEKVASAINYGD----------------------HGST-FAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETL 382 (465)
Q Consensus 329 ~~~i~~~~~~~~----------------------~~~t-~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l 382 (465)
++++++.+.... ...+ .+.+..+++++.++|+.+.+ ++..++++++.+++.+.|
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L 299 (393)
T 2huf_A 220 SHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGL 299 (393)
T ss_dssp CHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 999888765320 0111 23466677777778876532 345667777777777777
Q ss_pred HHHHHcCCCceeee-ccceEEEEEec--CChHHHHHHHHHC-CceEeecC---CCCEEEEec-CCCCcHHHHHHHHHHHH
Q 012363 383 KQKLARNPHVKDVR-GLGLIIGIEFD--VSATPVVDACRDS-GLLVLTAG---KGNVVRLVP-PLIISEQELDQAVEILC 454 (465)
Q Consensus 383 ~~~~~~~~~~~~~~-~~g~~~~i~~~--~~~~~~~~~l~~~-Gv~v~~~~---~~~~lRi~~-~~~~t~e~i~~~l~~l~ 454 (465)
+++ .+....... ..+.++++.+. .+..++.+.|+++ ||.+.++. .++++|+++ ++..+++++++++++|+
T Consensus 300 ~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l~ 377 (393)
T 2huf_A 300 QDA--GFELYADPKDRLSTVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQ 377 (393)
T ss_dssp HHT--TCCBSSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHH
T ss_pred HHc--CCeeccCccccCCcEEEEEcCCCCCHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccCcCCHHHHHHHHHHHH
Confidence 664 332211111 12457777763 3567899999875 99998753 247899998 55678999999999999
Q ss_pred HHHHHhhh
Q 012363 455 KTLPVLDS 462 (465)
Q Consensus 455 ~~l~~~~~ 462 (465)
+++++++.
T Consensus 378 ~~~~~~~~ 385 (393)
T 2huf_A 378 EAVAAVKP 385 (393)
T ss_dssp HHHHHHCC
T ss_pred HHHHHcCC
Confidence 99987754
No 145
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.94 E-value=6.2e-25 Score=215.29 Aligned_cols=325 Identities=17% Similarity=0.148 Sum_probs=215.1
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHH
Q 012363 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARK 177 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~ 177 (465)
+++|||.++... + .+|.+++++.+.... ...+++.+...+|+++|+++++.+.+++++||++|+.++++.+.
T Consensus 3 ~~~i~~~~~~~~--~--p~~~~~~a~~~~~~~---~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~~~~~~~- 74 (347)
T 1jg8_A 3 HMMIDLRSDTVT--K--PTEEMRKAMAQAEVG---DDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHT- 74 (347)
T ss_dssp --CEECSCGGGC--C--CCHHHHHHHHTCCCC---CGGGTCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHC-
T ss_pred ceEEEeccccCC--C--CCHHHHHHHhcCCCC---CcccCCChHHHHHHHHHHHHhCCceEEEecCcHHHHHHHHHHhc-
Confidence 467899887552 2 678888888654321 11233566678999999999998889999999999998887654
Q ss_pred HhhhcCCCCCCCCceEEEEcCCcccCccc--cccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC-----CCeEEE
Q 012363 178 FQRHSNPDSKEPATEFVSFTNSFHGRTMG--ALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP-----GKTAAV 250 (465)
Q Consensus 178 ~t~~~~~~~~~~~~~ii~~~~~yhg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-----~~~a~v 250 (465)
.++++|++.+|+|...... .....+..... . ...+.. .|+++|++++++ .++++|
T Consensus 75 ----------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~---v-~~~~~~----~d~~~l~~~i~~~~~~~~~~~~v 136 (347)
T 1jg8_A 75 ----------QRGDEVILEADSHIFWYEVGAMAVLSGVMPHP---V-PGKNGA----MDPDDVRKAIRPRNIHFPRTSLI 136 (347)
T ss_dssp ----------CTTCEEEEETTCHHHHSSTTHHHHHTCCEEEE---E-CEETTE----ECHHHHHHHSCCSCTTSCCEEEE
T ss_pred ----------CCCCEEEEcCcchhhhccccchhhccCeEEEE---e-cCCCCc----cCHHHHHHHhccccccccCceEE
Confidence 1688999999987543221 11111111100 0 000111 189999999974 157788
Q ss_pred EEcccCCCC-CcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC---CCCccccccc--cCCcccEEEecccCCCcccee
Q 012363 251 FVEPIQGEG-GIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG---RTGYLWAHEH--YGIFPDIMTLAKPLAGGLPIG 324 (465)
Q Consensus 251 i~ep~~~~~-G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g---r~g~~~~~~~--~~~~pdi~t~sK~lg~G~~iG 324 (465)
++++.++++ |. +.+.+.+++|.++|++||++||+||+|. ++ ..+. .... .+...-++++||++++ ++|
T Consensus 137 ~~~~~~npt~G~-~~~~~~l~~i~~~a~~~~~~li~D~a~~-~~~~~~~~~--~~~~~~~~~d~~~~s~sK~l~~--~~G 210 (347)
T 1jg8_A 137 AIENTHNRSGGR-VVPLENIKEICTIAKEHGINVHIDGARI-FNASIASGV--PVKEYAGYADSVMFCLSKGLCA--PVG 210 (347)
T ss_dssp EEESSBTTTTSB-CCCHHHHHHHHHHHHHHTCEEEEEETTH-HHHHHHHCC--CHHHHHHTCSEEEEESSSTTCC--SSC
T ss_pred EEeccccccCCc-cCcHHHHHHHHHHHHHCCCEEEeehhhh-hcchhhcCC--ChHHhcccccEEEEecccccCC--Cce
Confidence 777665555 65 4578889999999999999999999874 21 1111 1111 1121123468999975 467
Q ss_pred -eEEeCHHHHhhccCC--CCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceE
Q 012363 325 -AALVTEKVASAINYG--DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLI 401 (465)
Q Consensus 325 -~v~~~~~i~~~~~~~--~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~ 401 (465)
++++++++++.+... ..++++..+++.++++.++|+... +. .++..++.+++.+.|+++ ..... ..+..+.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~~~~~~~~l~~~L~~~--~~~~~-~~~~~~~~ 285 (347)
T 1jg8_A 211 SVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMV-DR-LKEDHENARFLALKLKEI--GYSVN-PEDVKTNM 285 (347)
T ss_dssp EEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSS-TT-HHHHHHHHHHHHHHHHHH--TCBCC-GGGCCSSE
T ss_pred EEEEcCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHhc--Cceec-cCCCcceE
Confidence 466788877665321 123344456677777777787542 22 344455667777777664 22211 12345778
Q ss_pred EEEEec---CChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012363 402 IGIEFD---VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 402 ~~i~~~---~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
+++.++ .+..++.+.|.++||.+.+.+. +.+|++++..++++++++++++|+++++++
T Consensus 286 ~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~-~~iRl~~~~~~~~e~i~~~~~~l~~~l~~~ 346 (347)
T 1jg8_A 286 VILRTDNLKVNAHGFIEALRNSGVLANAVSD-TEIRLVTHKDVSRNDIEEALNIFEKLFRKF 346 (347)
T ss_dssp EEEECTTSSSCHHHHHHHHHHHTEECEEEET-TEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcccccCCHHHHHHHHHHCCCEEecCCC-CeEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence 888874 3477899999999999988754 789999988899999999999999988654
No 146
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.94 E-value=1.1e-25 Score=224.33 Aligned_cols=326 Identities=13% Similarity=0.053 Sum_probs=220.0
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHH
Q 012363 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFA 175 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a 175 (465)
..|+|..+ .++.+|.|++++.+++.. +. .........+++++++++++ .++|++|+||++|+..+++.+
T Consensus 9 ~~yl~~~~------~~~~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~ 79 (392)
T 2z9v_A 9 PVITLTAG------PVNAYPEVLRGLGRTVLY--DY-DPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASL 79 (392)
T ss_dssp CSEECSSS------CCCCCHHHHHHTTSCCCC--TT-SHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHH
T ss_pred cceeecCC------CcCCCHHHHHHHhccccc--cc-cHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHh
Confidence 46777643 246889999998876643 11 11112336789999999988 479999999999999999976
Q ss_pred HHHhhhcCCCCCCCCceEEEEcCCcccCccccc-cccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC-CCCeEEEEEc
Q 012363 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL-ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ-PGKTAAVFVE 253 (465)
Q Consensus 176 ~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~-~~~~a~vi~e 253 (465)
. .++++|++.+++||+.....+ ...+..... .+...+. ..|+++|+++++ ..++++|+++
T Consensus 80 ~-----------~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~~----~~d~~~l~~~l~~~~~~~~v~~~ 141 (392)
T 2z9v_A 80 I-----------SPDDVVLNLASGVYGKGFGYWAKRYSPHLLE---IEVPYNE----AIDPQAVADMLKAHPEITVVSVC 141 (392)
T ss_dssp C-----------CTTCCEEEEESSHHHHHHHHHHHHHCSCEEE---EECCTTS----CCCHHHHHHHHHHCTTCCEEEEE
T ss_pred c-----------CCCCEEEEecCCcccHHHHHHHHHcCCceEE---eeCCCCC----CCCHHHHHHHHhcCCCCcEEEEe
Confidence 3 158899999999998631111 111111100 1111111 138999999994 2356677777
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEE--ecccCCCccceeeEEeCHH
Q 012363 254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTEK 331 (465)
Q Consensus 254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~~ 331 (465)
+.++++|.+.+ +++|.++|++||+++|+||+|+ +|.. ......+ .+|+++ ++|+++++.++|+++++++
T Consensus 142 ~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~--~~~~~~~--~~d~~~~s~sK~~~~~~g~G~l~~~~~ 212 (392)
T 2z9v_A 142 HHDTPSGTINP----IDAIGALVSAHGAYLIVDAVSS-FGGM--KTHPEDC--KADIYVTGPNKCLGAPPGLTMMGVSER 212 (392)
T ss_dssp SEEGGGTEECC----HHHHHHHHHHTTCEEEEECTTT-BTTB--SCCGGGG--TCSEEEECSSSTTCCCSCCEEEEECHH
T ss_pred ccCCCCceecc----HHHHHHHHHHcCCeEEEEcccc-cCCc--ccccccc--cceEEEecCcccccCCCceeEEEECHH
Confidence 77666777665 8999999999999999999997 3322 1122222 356665 5698887666799999999
Q ss_pred HHhhccCCC--------------------CcCCCCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHc
Q 012363 332 VASAINYGD--------------------HGSTFAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLAR 388 (465)
Q Consensus 332 i~~~~~~~~--------------------~~~t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~ 388 (465)
+++.+.+.. .....+.++.+++++.++++.+.+ ++..++++++.+++++.|+++ .
T Consensus 213 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g 290 (392)
T 2z9v_A 213 AWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM--G 290 (392)
T ss_dssp HHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--T
T ss_pred HHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc--C
Confidence 887664210 112234567777777788876543 345667777777777777663 3
Q ss_pred CCCce-ee-eccceEEEEEec--CChHHHHHHHHHC-CceEeecC---CCCEEEEec-CCCCcHHHHHHHHHHHHHHHHH
Q 012363 389 NPHVK-DV-RGLGLIIGIEFD--VSATPVVDACRDS-GLLVLTAG---KGNVVRLVP-PLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 389 ~~~~~-~~-~~~g~~~~i~~~--~~~~~~~~~l~~~-Gv~v~~~~---~~~~lRi~~-~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
..... .. ...+.++++.++ .+..++.+.|.++ ||.+.++. ..+++|+++ +..++++++++++++|++++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~ 370 (392)
T 2z9v_A 291 LSVWAASDSIASPTTTAVRTPDGVDEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAALTALGGAMNA 370 (392)
T ss_dssp CCBSSSSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred CeeccCCccccCCceEEEECCCCCCHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHHHHHHHHHHHH
Confidence 32211 10 124677778773 3577899999997 99998763 247899995 4378999999999999999987
Q ss_pred hh
Q 012363 460 LD 461 (465)
Q Consensus 460 ~~ 461 (465)
+.
T Consensus 371 ~~ 372 (392)
T 2z9v_A 371 AG 372 (392)
T ss_dssp TT
T ss_pred cC
Confidence 64
No 147
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.94 E-value=1.1e-25 Score=225.91 Aligned_cols=317 Identities=14% Similarity=0.068 Sum_probs=211.6
Q ss_pred cCCCCCHHHHHHHHHHHhhcccc-cCCCCCHHHHHHHHHHHhhcC--CCeEE-ecCCHHHHHHHHHHHHHHHhhhcCCCC
Q 012363 111 ALGHGDADWIKAVVDQANVLTHV-SNMYYSIPQIELAKRLVACSF--ADRVF-FSNTGTEANEAAIKFARKFQRHSNPDS 186 (465)
Q Consensus 111 ~lGh~~p~v~~a~~~~~~~~~~~-~~~~~~~~~~~la~~l~~~~~--~~~v~-~~~sG~eA~~~al~~a~~~t~~~~~~~ 186 (465)
.+++.++.+.+++.+++.+.... ......+...+++++++++++ .+.++ +++||++|+..+++.+.
T Consensus 14 ~~~p~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~---------- 83 (416)
T 3isl_A 14 IMTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVI---------- 83 (416)
T ss_dssp ECSSSSCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHC----------
T ss_pred eecCCCcCcCHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhc----------
Confidence 35555555666666665542211 111112337889999999987 44554 89999999999998663
Q ss_pred CCCCceEEEEcCCcccCccc-cccccCCCCcCCCCCCCCCCceEeeCC-----CHHHHHhhcCCCCeEEEEEcccCCCCC
Q 012363 187 KEPATEFVSFTNSFHGRTMG-ALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPGKTAAVFVEPIQGEGG 260 (465)
Q Consensus 187 ~~~~~~ii~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~a~vi~ep~~~~~G 260 (465)
.++++|++.+++||+.... .....+. .+..+|.+ |+++|+++++.+++++|++++.++.+|
T Consensus 84 -~~gd~Vl~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG 150 (416)
T 3isl_A 84 -EPEDDVLIPIYGRFGYLLTEIAERYGA------------NVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTG 150 (416)
T ss_dssp -CTTCEEEEEESSHHHHHHHHHHHHTTC------------EEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTT
T ss_pred -CCCCEEEEecCCcccHHHHHHHHhcCC------------eeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCc
Confidence 2689999999999983221 1111111 12222222 899999999733457777777667777
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEE--ecccCCCccceeeEEeCHHHHhhccC
Q 012363 261 IYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTEKVASAINY 338 (465)
Q Consensus 261 ~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~~i~~~~~~ 338 (465)
.+.+ +++|.++|++||+++|+||+|+ +|.. ...... ..+|+++ ++|+++++.++|++++++++++.+.+
T Consensus 151 ~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~--~~~~~~--~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~ 221 (416)
T 3isl_A 151 RIHP----LKAIGEACRTEDALFIVDAVAT-IGGC--EVKVDE--WKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAA 221 (416)
T ss_dssp EECC----CHHHHHHHHHTTCEEEEECTTT-TTTS--CCCTTT--TTCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHT
T ss_pred eecC----HHHHHHHHHHcCCEEEEECCcc-ccCC--Ccchhh--cCCCEEEecCccccCCCCCeEEEEECHHHHHHhhc
Confidence 7665 8899999999999999999987 3221 112222 2356665 45988887889999999998877653
Q ss_pred CC--------------------------------------CcCCCCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHH
Q 012363 339 GD--------------------------------------HGSTFAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHY 377 (465)
Q Consensus 339 ~~--------------------------------------~~~t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~ 377 (465)
.. .....+.+..+++++.++++.+.+ ++..++++++.++
T Consensus 222 ~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~ 301 (416)
T 3isl_A 222 RKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAA 301 (416)
T ss_dssp C------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 11 111234577788888888876543 3566667777777
Q ss_pred HHHHHHHHHHcCCCceee-eccceEEEEEec--CChHHHHHHHHHC-CceEeecC---CCCEEEEecCCCCcHHH-HHHH
Q 012363 378 FKETLKQKLARNPHVKDV-RGLGLIIGIEFD--VSATPVVDACRDS-GLLVLTAG---KGNVVRLVPPLIISEQE-LDQA 449 (465)
Q Consensus 378 l~~~l~~~~~~~~~~~~~-~~~g~~~~i~~~--~~~~~~~~~l~~~-Gv~v~~~~---~~~~lRi~~~~~~t~e~-i~~~ 449 (465)
+.+.|++. .+...... ...+.++++.++ .+..++.+.|+++ ||.+.++. .++++|++++...++++ ++++
T Consensus 302 l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~ 379 (416)
T 3isl_A 302 LAAGIKAM--GLRLFGDDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFV 379 (416)
T ss_dssp HHHHHHHT--TCCBCSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHH
T ss_pred HHHHHHHc--CCEeccCccccCCcEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHH
Confidence 77777663 22211111 123567777773 4678899999887 99998753 24789999866566666 9999
Q ss_pred HHHHHHHHHHhh
Q 012363 450 VEILCKTLPVLD 461 (465)
Q Consensus 450 l~~l~~~l~~~~ 461 (465)
+++|+++++++.
T Consensus 380 ~~~l~~~~~~~~ 391 (416)
T 3isl_A 380 LAGLEAVLLRHN 391 (416)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 999999998764
No 148
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.94 E-value=2.4e-25 Score=218.34 Aligned_cols=303 Identities=16% Similarity=0.085 Sum_probs=208.0
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCce
Q 012363 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ 192 (465)
.+|++++|+.+++.. + ..........+++++++++++ .+++++++||++|+..+++.+. .++++
T Consensus 12 ~~~~v~~a~~~~~~~--~-~~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~-----------~~gd~ 77 (352)
T 1iug_A 12 LHPKALEALARPQLH--H-RTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF-----------APGER 77 (352)
T ss_dssp CCHHHHHHHHSCCCC--T-TSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC-----------CTTCE
T ss_pred CCHHHHHHhccCCCC--c-cCHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhcc-----------CCCCe
Confidence 679999999887642 1 111112336789999999988 4689999999999999999764 15789
Q ss_pred EEEEcCCcccCccccc-cccCCCCcCCCCCCCCCCceEeeC-----CCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCH
Q 012363 193 FVSFTNSFHGRTMGAL-ALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATK 266 (465)
Q Consensus 193 ii~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~ 266 (465)
|++.+++|++...... ...+. .+..+|. .|+++|++ .++++|+++..++++|.+.+
T Consensus 78 vl~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~d~~~l~~----~~~~~v~~~~~~nptG~~~~-- 139 (352)
T 1iug_A 78 VLVPVYGKFSERFYEIALEAGL------------VVERLDYPYGDTPRPEDVAK----EGYAGLLLVHSETSTGALAD-- 139 (352)
T ss_dssp EEEEECSHHHHHHHHHHHHTTC------------EEEEEECCTTCCCCTTTSCC----SSCSEEEEESEETTTTEECC--
T ss_pred EEEEeCCchhHHHHHHHHHcCC------------ceEEEeCCCCCCCCHHHHhc----cCCcEEEEEEecCCcceecC--
Confidence 9999999998751111 11111 1111221 15666655 24566777766666677665
Q ss_pred HHHHHHHHHHHHh--CCEEEEeccccCCCCCCccccccccCCcccEE--EecccCCCccceeeEEeCHHHHhhccC----
Q 012363 267 EFLQFLRDACDDA--GALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAALVTEKVASAINY---- 338 (465)
Q Consensus 267 ~~l~~l~~l~~~~--g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~---- 338 (465)
+++|.++|++| |+++|+||+|+ +|.. .+....++ +|++ +++|+++++.++|++++++++++.+.+
T Consensus 140 --l~~i~~l~~~~~~~~~li~D~a~~-~~~~--~~~~~~~~--~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~ 212 (352)
T 1iug_A 140 --LPALARAFKEKNPEGLVGADMVTS-LLVG--EVALEAMG--VDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYY 212 (352)
T ss_dssp --HHHHHHHHHHHCTTCEEEEECTTT-BTTB--CCCSGGGT--CSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSST
T ss_pred --HHHHHHHHHhhCCCCEEEEECCcc-ccCc--ceeccccC--eeEEEecCcccccCCCceeEEEECHHHHHHhhCCCce
Confidence 89999999999 99999999986 4322 11222223 5665 456988776678999999987765211
Q ss_pred ----------CCCcCCCCChHHHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHHHHHcCCCceeeec--cceEEEE
Q 012363 339 ----------GDHGSTFAGSPLVCNAAIAVLDKISNP--AFLASVSKKGHYFKETLKQKLARNPHVKDVRG--LGLIIGI 404 (465)
Q Consensus 339 ----------~~~~~t~~~~~~~~~aa~a~L~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~g~~~~i 404 (465)
......++.++.+++++.++++.+.+. +..++++++.+++.+.|+++ +. ..... .+.++++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~-~~~~~~~~~~~~~~ 287 (352)
T 1iug_A 213 LDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG----GL-RPVPKRFSPAVAAF 287 (352)
T ss_dssp TCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT----TC-EESCSSBCTTCEEE
T ss_pred eeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CC-cccccccCCeEEEE
Confidence 011223456788888888888876543 45555666666666666553 21 22222 5778888
Q ss_pred Eec--CChHHHHHHHHHCCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012363 405 EFD--VSATPVVDACRDSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 405 ~~~--~~~~~~~~~l~~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
.++ .+..++.+.|.++||.+.++. .++++|++++...+++++++++++|+++++++.
T Consensus 288 ~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 349 (352)
T 1iug_A 288 YLPEGVPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEIL 349 (352)
T ss_dssp ECCTTCCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred EcCCCCCHHHHHHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHHhc
Confidence 874 357789999999999998763 237899999988899999999999999988764
No 149
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.94 E-value=1.2e-25 Score=224.37 Aligned_cols=315 Identities=13% Similarity=0.039 Sum_probs=211.2
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcC--CC-eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 012363 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--AD-RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT 191 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~-~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~ 191 (465)
.+|.+++|+.+.+.. + ...++.....+++++++++++ .+ +|++++||++|+..+++.+. .+++
T Consensus 29 ~~~~v~~a~~~~~~~--~-~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~-----------~~gd 94 (396)
T 2ch1_A 29 CSKRVLTAMTNTVLS--N-FHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLL-----------EEGD 94 (396)
T ss_dssp CCHHHHHHTTSCCCC--T-TCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC-----------CTTC
T ss_pred CCHHHHHHhcccccc--C-CChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhc-----------CCCC
Confidence 567888887665422 1 111122337789999999987 45 79999999999999999774 1588
Q ss_pred eEEEEcCCcccCcc-ccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 012363 192 EFVSFTNSFHGRTM-GALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQ 270 (465)
Q Consensus 192 ~ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~ 270 (465)
+|++.+|+|+++.. ......+..... .+...+. ..|+++|++++++.++++|++++.++.+|.+.+ ++
T Consensus 95 ~vl~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~~----~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~----~~ 163 (396)
T 2ch1_A 95 RVLIAVNGIWAERAVEMSERYGADVRT---IEGPPDR----PFSLETLARAIELHQPKCLFLTHGDSSSGLLQP----LE 163 (396)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTCEEEE---EECCTTS----CCCHHHHHHHHHHHCCSEEEEESEETTTTEECC----CT
T ss_pred eEEEEcCCcccHHHHHHHHHcCCceEE---ecCCCCC----CCCHHHHHHHHHhCCCCEEEEECCCCCCceecC----HH
Confidence 99999999998741 111111111100 1111111 138999999986423556666665555666655 88
Q ss_pred HHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCccceeeEEeCHHHHhhccCCC--------
Q 012363 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINYGD-------- 340 (465)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~~-------- 340 (465)
+|.++|++||+++|+||+|. +|.. ..... ...+|++++| |+++++.++|++++++++++.+....
T Consensus 164 ~i~~l~~~~~~~li~Dea~~-~g~~--~~~~~--~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 238 (396)
T 2ch1_A 164 GVGQICHQHDCLLIVDAVAS-LCGV--PFYMD--KWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYW 238 (396)
T ss_dssp THHHHHHHTTCEEEEECTTT-BTTB--CCCTT--TTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGG
T ss_pred HHHHHHHHcCCEEEEEcccc-ccCC--ccchh--hcCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEe
Confidence 99999999999999999997 5432 11222 2346877655 99987777899999998887663210
Q ss_pred ---------------CcCCCCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCceeee--ccce
Q 012363 341 ---------------HGSTFAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKDVR--GLGL 400 (465)
Q Consensus 341 ---------------~~~t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~g~ 400 (465)
....++.+..++.++.++|+.+.+ ++..++++++.+++.+.|+++ ......... ..+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~ 316 (396)
T 2ch1_A 239 DLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM--GLDIFVKDPRHRLPT 316 (396)
T ss_dssp CHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH--TCCBSSCSGGGBCTT
T ss_pred chHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC--CCeeccCCccccCCc
Confidence 112234677788888888887532 345667777777777777765 332211111 1234
Q ss_pred EEEEEec--CChHHHHHHHHHC-CceEeecC---CCCEEEEec-CCCCcHHHHHHHHHHHHHHHHHhh
Q 012363 401 IIGIEFD--VSATPVVDACRDS-GLLVLTAG---KGNVVRLVP-PLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 401 ~~~i~~~--~~~~~~~~~l~~~-Gv~v~~~~---~~~~lRi~~-~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
++++.++ .+..++.+.|+++ ||.+.++. .++++|+++ ++.++++++++++++|+++++++.
T Consensus 317 ~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~ 384 (396)
T 2ch1_A 317 VTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATH 384 (396)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEcCCCCCHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhC
Confidence 7777763 3677899999875 99998753 247899998 567799999999999999998765
No 150
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.94 E-value=8.4e-25 Score=217.86 Aligned_cols=289 Identities=15% Similarity=0.144 Sum_probs=200.8
Q ss_pred ccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccC
Q 012363 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS 212 (465)
Q Consensus 133 ~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~ 212 (465)
.+..++++...+++++|+++++.+..+++++|++|+..+++.+. .++++|++.+++||+.........
T Consensus 45 ~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~~~~~~-----------~~g~~vl~~~~~~~~~~~~~~~~~- 112 (386)
T 1cs1_A 45 DYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFL-----------KPGDLLVAPHDCYGGSYRLFDSLA- 112 (386)
T ss_dssp SBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEEEETTCCHHHHHHHHHHH-
T ss_pred ceeCCCCccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHh-----------CCCCEEEEecCCcHhHHHHHHHHH-
Confidence 34556777788999999999985566666778999999999763 158899999999998543211110
Q ss_pred CCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 012363 213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292 (465)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (465)
......+..++.+|+++|++++++ ++++|++++.++++|.+.+ +++|+++|++||+++|+||+|+++
T Consensus 113 --------~~~g~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~ 179 (386)
T 1cs1_A 113 --------KRGCYRVLFVDQGDEQALRAALAE-KPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSVVDNTFLSP 179 (386)
T ss_dssp --------TTTSCEEEEECTTCHHHHHHHHHT-CCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCT
T ss_pred --------HhcCCEEEEeCCCCHHHHHHhhcc-CCcEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCccc
Confidence 011133456677799999999975 5778888888888887765 999999999999999999999976
Q ss_pred CCCCccccccccCCcccEEEecccCCC-ccce-eeEEeCH-HHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHH
Q 012363 293 GRTGYLWAHEHYGIFPDIMTLAKPLAG-GLPI-GAALVTE-KVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLA 369 (465)
Q Consensus 293 gr~g~~~~~~~~~~~pdi~t~sK~lg~-G~~i-G~v~~~~-~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~ 369 (465)
... .. . .++....+.+++|++++ |.++ |++++++ ++++.+.+.....+.+.++++++++.++++.+ +...+
T Consensus 180 ~~~-~~--~-~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~ 253 (386)
T 1cs1_A 180 ALQ-NP--L-ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTL--VPRME 253 (386)
T ss_dssp TTC-CG--G-GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTTH--HHHHH
T ss_pred ccC-Cc--c-ccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccHH--HHHHH
Confidence 432 11 1 23433344478999986 5676 9999986 78887764333344567888888877777533 23344
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcee------------------eeccceEEEEEecCChHHHHHHHHHCCceEeec--C-
Q 012363 370 SVSKKGHYFKETLKQKLARNPHVKD------------------VRGLGLIIGIEFDVSATPVVDACRDSGLLVLTA--G- 428 (465)
Q Consensus 370 ~~~~~~~~l~~~l~~~~~~~~~~~~------------------~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~--~- 428 (465)
++.++.+.+.+.|++ ++.+.. .++.|.++.+.+......+.+.|.++||++... +
T Consensus 254 ~~~~~~~~l~~~l~~----~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~ 329 (386)
T 1cs1_A 254 LAQRNAQAIVKYLQT----QPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGG 329 (386)
T ss_dssp HHHHHHHHHHHHHTT----CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHTCSSSEEBSCCCS
T ss_pred HHHHHHHHHHHHHhc----CCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCCHHHHHHHHHhCCcceEcccCCC
Confidence 555555555555443 221111 234588888888544567788888899988741 1
Q ss_pred --------------------------CCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012363 429 --------------------------KGNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 429 --------------------------~~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
.++++|++++...++++++.+.+.|+++
T Consensus 330 ~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~ 383 (386)
T 1cs1_A 330 VESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA 383 (386)
T ss_dssp SSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred cceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 1378999999977777777776666543
No 151
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.94 E-value=4.3e-25 Score=221.27 Aligned_cols=291 Identities=14% Similarity=0.085 Sum_probs=199.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCC
Q 012363 136 MYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH 215 (465)
Q Consensus 136 ~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~ 215 (465)
....+...+++++++++++.+++++++||++|+..+++.+. .++++|++.+|.|+++........
T Consensus 58 ~~~~~~~~~l~~~ia~~~g~~~~i~~~~g~~ai~~~~~~l~-----------~~gd~Vl~~~~~y~~~~~~~~~~~---- 122 (404)
T 1e5e_A 58 RLGNPTVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTIL-----------KAGDHLISDECLYGCTHALFEHAL---- 122 (404)
T ss_dssp TTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEEEESCCCHHHHHHHHTHH----
T ss_pred CCcChHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHHHHHh-----------CCCCEEEEeCCCchhHHHHHHHHH----
Confidence 34566678999999999997789999999999999998654 168899999999987654210000
Q ss_pred cCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH-hCCEEEEeccccCCCC
Q 012363 216 YRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDD-AGALLVFDEVQCGLGR 294 (465)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~-~g~llI~DEv~~g~gr 294 (465)
......+..+|.+|+++|++++++ ++++|++++.++++|.+.+ +++|.++|++ ||+++|+||+|.++..
T Consensus 123 -----~~~g~~~~~v~~~d~~~l~~~i~~-~t~~v~l~~p~NptG~v~~----l~~i~~la~~~~~~~li~De~~~~~~~ 192 (404)
T 1e5e_A 123 -----TKFGIQVDFINTAIPGEVKKHMKP-NTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIADNTFCSPMI 192 (404)
T ss_dssp -----HHTTCEEEEECTTSTTHHHHHCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTTCTTT
T ss_pred -----HHcCCEEEEECCCCHHHHHHhcCC-CCcEEEEECCCCCCCcccC----HHHHHHHHHhhcCCEEEEECCCchhhh
Confidence 011123455666799999999975 5777777776666676654 9999999999 9999999999997643
Q ss_pred CCccccccccCCcccEEEecccCCC-ccce-eeEEeCHHHHh-hccCCCCcC-CCCChHHHHHHHHHHHHHhcCchHHHH
Q 012363 295 TGYLWAHEHYGIFPDIMTLAKPLAG-GLPI-GAALVTEKVAS-AINYGDHGS-TFAGSPLVCNAAIAVLDKISNPAFLAS 370 (465)
Q Consensus 295 ~g~~~~~~~~~~~pdi~t~sK~lg~-G~~i-G~v~~~~~i~~-~~~~~~~~~-t~~~~~~~~~aa~a~L~~~~~~~~~~~ 370 (465)
. ... .++....+.++||++++ |+|+ |++++++++++ .+.+..... +.+.+++.+.++.++|+.+ +...++
T Consensus 193 ~-~~~---~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~~~--~~~~~~ 266 (404)
T 1e5e_A 193 T-NPV---DFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTL--NIRMKA 266 (404)
T ss_dssp C-CGG---GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTH--HHHHHH
T ss_pred C-Ccc---ccCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhHhHH--HHHHHH
Confidence 2 221 23433334478999986 7998 99999999888 776544333 4567899999888888642 233444
Q ss_pred HHHHHHHHHHHHHHHH----------HcCCCcee----eeccceEEEEEecCChHHHHHHHHHCCceEeec--C------
Q 012363 371 VSKKGHYFKETLKQKL----------ARNPHVKD----VRGLGLIIGIEFDVSATPVVDACRDSGLLVLTA--G------ 428 (465)
Q Consensus 371 ~~~~~~~l~~~l~~~~----------~~~~~~~~----~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~--~------ 428 (465)
..++.+.+.+.+++.. ..+|.+.. .++.|.++.+++........+.|.+.||++... |
T Consensus 267 ~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~s~G~~~sl~ 346 (404)
T 1e5e_A 267 ESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCESLI 346 (404)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCSSSEESSCCCSSSCEE
T ss_pred HHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCCHHHHHHHHHhCCCceeccCCCCcceee
Confidence 4555555555444321 00111111 234588888887432234555666778854431 1
Q ss_pred --------------------C-CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012363 429 --------------------K-GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 429 --------------------~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
. .+++|++++. |+++++++.|+++++.+.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l~~al~~~~ 396 (404)
T 1e5e_A 347 QHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQGLDALL 396 (404)
T ss_dssp ECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHHHH
T ss_pred ecccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHHHHH
Confidence 1 3689999876 789999999999887654
No 152
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.94 E-value=3.3e-26 Score=233.73 Aligned_cols=341 Identities=12% Similarity=0.072 Sum_probs=207.6
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHH
Q 012363 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFAR 176 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~ 176 (465)
|+.||||.++.++ |+|++++.+++..... .+...+...+|+++++++++.++++||+||++|++.|+++++
T Consensus 40 ~~~ylD~~~~~~~-------~~v~~a~~~~l~~~~~--~y~~~~~~~~l~~~la~~~~~~~v~~t~~gt~A~~~al~~~~ 110 (467)
T 2oqx_A 40 EDVFIDLLTDSGT-------GAVTQSMQAAMMRGDE--AYSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLI 110 (467)
T ss_dssp GGCSEECSCCSSC-------SCCCHHHHHHTTSCCC--CSSSCHHHHHHHHHHHHHHCCSEEEEEC--CCSHHHHHHHHH
T ss_pred CCeeEecccCCCc-------HHHHHHHHHHhccCcc--eeccCchhHHHHHHHHHHhCcCcEEEcCCcHHHHHHHHHHHh
Confidence 6689999887653 7899999888754221 223455678999999999999999999999999999999987
Q ss_pred HHhh-hcCCCCCCCC-ceEEEEcCCcccCcccccc-ccCCCCcCC-CCCCCCCCceEeeC---CCHHHHHhhcCC---CC
Q 012363 177 KFQR-HSNPDSKEPA-TEFVSFTNSFHGRTMGALA-LTSKEHYRS-PFEPVMPGVNFVEY---GNIEATRKLIQP---GK 246 (465)
Q Consensus 177 ~~t~-~~~~~~~~~~-~~ii~~~~~yhg~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~---~d~~~le~~l~~---~~ 246 (465)
..+. ..+. ++ ++|+.. .||+.+..... ..+...... ...+.... ...++ .|+++|+++++. .+
T Consensus 111 ~~~~~~~G~----~~~d~Ii~~--~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~Le~~i~~~~~~~ 183 (467)
T 2oqx_A 111 KKREQEKGL----DRSKMVAFS--NYFFDTTQGHSQINGCTVRNVYIKEAFDTG-VRYDFKGNFDLEGLERGIEEVGPNN 183 (467)
T ss_dssp HHHHHHHCC----CTTTCEEEE--SSCCHHHHHHHHHTTCEEEECBCTTTTCTT-SCCTTTTCBCHHHHHHHHHHHCGGG
T ss_pred ccccccCCC----CccceEEec--ccccccchhhhhccCcceeeccccccccCC-CCCCccCCcCHHHHHHHHHhcCCCc
Confidence 6420 0000 12 676665 47754321111 111100000 00000000 00111 289999999973 36
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC----------CCCCCccc-ccc--ccCCccc--EE
Q 012363 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG----------LGRTGYLW-AHE--HYGIFPD--IM 311 (465)
Q Consensus 247 ~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g----------~gr~g~~~-~~~--~~~~~pd--i~ 311 (465)
+++|+++++++++|..+++.+++++|+++|++||++||+|+++.. .+..|... .+. .+ ..+| +.
T Consensus 184 ~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~~ 262 (467)
T 2oqx_A 184 VPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETY-KYADMLAM 262 (467)
T ss_dssp CCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHG-GGCSEEEE
T ss_pred eeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhh-ccCCeEEE
Confidence 889999987776544677899999999999999999999965432 12233211 110 00 1134 35
Q ss_pred EecccCCCccce-eeEEeCHH-HH---hhccCC----CCcCCCCCh-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Q 012363 312 TLAKPLAGGLPI-GAALVTEK-VA---SAINYG----DHGSTFAGS-PLVCNAAIAVLDKISNPAFLASVSKKGHYFKET 381 (465)
Q Consensus 312 t~sK~lg~G~~i-G~v~~~~~-i~---~~~~~~----~~~~t~~~~-~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~ 381 (465)
+++|+++. |+ |+++++++ ++ ..+.+. ....+++.. ..++++....++...+++..++..++.+++++.
T Consensus 263 s~sK~~g~--~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~~ 340 (467)
T 2oqx_A 263 SAKKDAMV--PMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDG 340 (467)
T ss_dssp ESSSTTCC--SSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ecccccCC--CCceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHH
Confidence 67898864 43 56667655 33 333211 111123322 222222223334332334566677788888888
Q ss_pred HHHHHHcCCCceeeeccceEEEEEec-----CC-----hHHHHHHH-HHCCceEeecCC----------------CCEEE
Q 012363 382 LKQKLARNPHVKDVRGLGLIIGIEFD-----VS-----ATPVVDAC-RDSGLLVLTAGK----------------GNVVR 434 (465)
Q Consensus 382 l~~~~~~~~~~~~~~~~g~~~~i~~~-----~~-----~~~~~~~l-~~~Gv~v~~~~~----------------~~~lR 434 (465)
|++. .++.. +..|.++++.+. .+ ..++++.| .++||.+.+++. .+++|
T Consensus 341 L~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iR 415 (467)
T 2oqx_A 341 LEEI--GVVCQ---QAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLR 415 (467)
T ss_dssp HHHT--TCCEE---EECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEE
T ss_pred HHHC--CCeee---cCCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEE
Confidence 8765 34332 334666777662 12 34458888 789999987431 16899
Q ss_pred EecCCC-CcHHHHHHHHHHHHHHHHHhh
Q 012363 435 LVPPLI-ISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 435 i~~~~~-~t~e~i~~~l~~l~~~l~~~~ 461 (465)
|+++.. +|+++|++++++|++++++++
T Consensus 416 l~~~~~~~t~e~i~~~~~~l~~~l~~~~ 443 (467)
T 2oqx_A 416 LTIPRATYTQTHMDFIIEAFKHVKENAA 443 (467)
T ss_dssp ECCCTTTSCHHHHHHHHHHHHHHHHSGG
T ss_pred EEecCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 999988 999999999999999998754
No 153
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.94 E-value=8.1e-26 Score=225.89 Aligned_cols=327 Identities=13% Similarity=0.092 Sum_probs=194.4
Q ss_pred EEeCCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccc------cCCCCCHHHHHHHHHHHhhcC--CCeEEecCC
Q 012363 92 LYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV------SNMYYSIPQIELAKRLVACSF--ADRVFFSNT 163 (465)
Q Consensus 92 ~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~------~~~~~~~~~~~la~~l~~~~~--~~~v~~~~s 163 (465)
.++.++..|||+.++. ..+|.+++++.+++.+.... ......+...+++++++++++ .++|++++|
T Consensus 15 ~~~~~~~iyld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g 88 (400)
T 3vax_A 15 VPRGSHMTYLDAAATT------RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTSG 88 (400)
T ss_dssp -------CCCCCCCCS------SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESC
T ss_pred CcccCCcEEecCCCCC------CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCC
Confidence 4455777889987643 47899999999988753110 011122336789999999988 468999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCc-eEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC-----CCHHH
Q 012363 164 GTEANEAAIKFARKFQRHSNPDSKEPAT-EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEA 237 (465)
Q Consensus 164 G~eA~~~al~~a~~~t~~~~~~~~~~~~-~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~ 237 (465)
|++|+..+++.+..++. .+++ .|++.++.|+++......+.. .. ..+..+|. .|+++
T Consensus 89 ~t~al~~~~~~l~~~~~-------~~gd~~Vl~~~~~~~~~~~~~~~~~~-~g---------~~~~~v~~~~~~~~d~~~ 151 (400)
T 3vax_A 89 ATESNNIALLGLAPYGE-------RTGRRHIITSAIEHKAVLEPLEHLAG-RG---------FEVDFLTPGPSGRISVEG 151 (400)
T ss_dssp HHHHHHHHHHTTHHHHH-------HHTCCEEEEETTSCHHHHHHHHHHHT-TT---------CEEEEECCCTTCCCCHHH
T ss_pred HHHHHHHHHHHHHHhhc-------cCCCCEEEECccccHhHHHHHHHHHh-cC---------CeEEEEccCCCCCcCHHH
Confidence 99999999998753321 0478 899999988876544332210 00 11222222 28999
Q ss_pred HHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEe--cc
Q 012363 238 TRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL--AK 315 (465)
Q Consensus 238 le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~--sK 315 (465)
|++++++ ++++|++++.++++|.+.+ +++|.++|++||++||+||+|+ ++... .+.... +|++++ +|
T Consensus 152 l~~~i~~-~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~~----~~~~~~-~d~~~~s~~K 220 (400)
T 3vax_A 152 VMERLRP-DTLLVSLMHVNNETGVIQP----VAELAQQLRATPTYLHVDAAQG-YGKVP----GDLTTP-IDMISISGHK 220 (400)
T ss_dssp HHTTCCT-TEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSCEEEEECTTT-TTTSG----GGGGSC-CSEEEEETGG
T ss_pred HHHhcCC-CceEEEEECCCCCceeeCc----HHHHHHHHHhcCCEEEEEhhhh-cCCCC----cChhhc-CcEEEEeHHH
Confidence 9999975 5788888888777887765 8999999999999999999997 32221 222233 777755 59
Q ss_pred cCCCccceeeEE-eCH-HHH---hhccCCCC-------cCCCCChHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHH
Q 012363 316 PLAGGLPIGAAL-VTE-KVA---SAINYGDH-------GSTFAGSPLVCNAAIAVLDKISN--PAFLASVSKKGHYFKET 381 (465)
Q Consensus 316 ~lg~G~~iG~v~-~~~-~i~---~~~~~~~~-------~~t~~~~~~~~~aa~a~L~~~~~--~~~~~~~~~~~~~l~~~ 381 (465)
.+| +.++|+++ +++ ++. ..+.+... ....+.++.+++++.++++.+.+ +++.++++++.+++.+.
T Consensus 221 ~~g-~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 299 (400)
T 3vax_A 221 IGA-PKGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAG 299 (400)
T ss_dssp GTS-CSSCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred hCC-CCceEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 543 34578887 766 221 12222111 12334577788887788876533 34455555555555555
Q ss_pred HHHHHHcCCCceeeec----cceEEEEEec-CChHHHHHHHHHCCceEeecC-----------------C-----CCEEE
Q 012363 382 LKQKLARNPHVKDVRG----LGLIIGIEFD-VSATPVVDACRDSGLLVLTAG-----------------K-----GNVVR 434 (465)
Q Consensus 382 l~~~~~~~~~~~~~~~----~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~-----------------~-----~~~lR 434 (465)
|+ .+.+..... .+.++.+.+. .+..++.+.|. +||.+.++. . .+++|
T Consensus 300 L~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR 373 (400)
T 3vax_A 300 LA-----STSFQVNGDQDHVVPHILNLSFEDVDAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLR 373 (400)
T ss_dssp HT-----TTTCEECSCTTSBCTTEEEEECTTCCHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEE
T ss_pred hC-----CCCEEEeCCcccCCCCEEEEEeCCCCHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCCCccccCceEE
Confidence 43 332222221 2456677663 46778999999 999887631 0 27899
Q ss_pred Eec-CCCCcHHHHHHHHHHHHHHHHH
Q 012363 435 LVP-PLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 435 i~~-~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
|++ +...+++++++++++|++++++
T Consensus 374 ls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 374 FSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp EEEEEC--------------------
T ss_pred EEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 999 8889999999999999988754
No 154
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.94 E-value=3.5e-26 Score=224.18 Aligned_cols=304 Identities=17% Similarity=0.139 Sum_probs=209.8
Q ss_pred CCHHHHHHHHHHHhhcccccCCCC--CHHHHHHHHHHHhhcCC----CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCC
Q 012363 115 GDADWIKAVVDQANVLTHVSNMYY--SIPQIELAKRLVACSFA----DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKE 188 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~--~~~~~~la~~l~~~~~~----~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~ 188 (465)
.+|+|++|+.+++.. + .++ .....+++++++++++. +++++|+||++|+..+++.+.
T Consensus 11 ~~~~v~~a~~~~~~~--~---~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~------------ 73 (353)
T 2yrr_A 11 IPERVQKALLRPMRG--H---LDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD------------ 73 (353)
T ss_dssp CCHHHHGGGGSCCCC--T---TCHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS------------
T ss_pred CCHHHHHHHhccccc--c---cCHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc------------
Confidence 678899988876643 1 122 23378899999999873 579999999999999998664
Q ss_pred CCceEEEEcCCcccCcc-ccccccCCCCcCCCCCCCCCCceEeeC-----CCHHHHHhhcCCCCeEEEEEcccCCCCCcc
Q 012363 189 PATEFVSFTNSFHGRTM-GALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAVFVEPIQGEGGIY 262 (465)
Q Consensus 189 ~~~~ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~a~vi~ep~~~~~G~~ 262 (465)
+ ++|++.+++||++.. ......+. .+..+|. .|+++|++++++.++++|++++.++++|.+
T Consensus 74 ~-d~vl~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~ 140 (353)
T 2yrr_A 74 R-GPVLVLVNGAFSQRVAEMAALHGL------------DPEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVL 140 (353)
T ss_dssp C-CCEEEEECSHHHHHHHHHHHHTTC------------CEEEEECCTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEE
T ss_pred C-CcEEEEcCCCchHHHHHHHHHcCC------------ceEEEeCCCCCCCCHHHHHHHHHhCCCCEEEEEccCCCccee
Confidence 3 689999999998611 11111111 1222221 389999999864245667777766666776
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEe--cccCCCccceeeEEeCHHHHhhccC--
Q 012363 263 SATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL--AKPLAGGLPIGAALVTEKVASAINY-- 338 (465)
Q Consensus 263 ~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~--sK~lg~G~~iG~v~~~~~i~~~~~~-- 338 (465)
.+ +++|.++|++||+++|+||+|. +|... .....++ +|++++ +|+++++.++|++++++++++.+..
T Consensus 141 ~~----~~~i~~l~~~~~~~li~D~a~~-~~~~~--~~~~~~~--~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~~~ 211 (353)
T 2yrr_A 141 NP----AEAIGALAKEAGALFFLDAVTT-LGMLP--FSMRAMG--VDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKR 211 (353)
T ss_dssp CC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCHHHHT--CSEEECCTTSTTCCCSSCEEEEECHHHHHHCCCCS
T ss_pred cC----HHHHHHHHHHcCCeEEEEcCcc-ccccc--ccccccC--ceEEEecCcccccCCCceEEEEECHHHHHHhccCC
Confidence 65 8899999999999999999994 65432 2222233 577764 6988765568999999998877751
Q ss_pred C-------------CCcCCCCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEE
Q 012363 339 G-------------DHGSTFAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLII 402 (465)
Q Consensus 339 ~-------------~~~~t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~ 402 (465)
. .....++.++.+++++.++++.+.+ ++..++++++.+++.+.|+++ .+.........+.++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~ 289 (353)
T 2yrr_A 212 GWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR--GFRPYPKASPLPTVL 289 (353)
T ss_dssp CSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCEESCSSSBCTTEE
T ss_pred CccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC--CCccccCccCCCeEE
Confidence 0 1122335677788888888876543 245666777777777777653 222111111145566
Q ss_pred EEEec--CChHHHHHHHHHCCceEeecC---CCCEEEEecCCCCcHHHHH-HHHHHHHHHHHH
Q 012363 403 GIEFD--VSATPVVDACRDSGLLVLTAG---KGNVVRLVPPLIISEQELD-QAVEILCKTLPV 459 (465)
Q Consensus 403 ~i~~~--~~~~~~~~~l~~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~-~~l~~l~~~l~~ 459 (465)
++.++ .+..++.+.|.++||.+.++. .++++|++++...++++++ +++++|+++++.
T Consensus 290 ~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 290 VVRPPEGVDADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp EEECCTTCCHHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 77773 357789999999999998753 2468999987778899999 999999988764
No 155
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.94 E-value=1.4e-24 Score=219.48 Aligned_cols=344 Identities=18% Similarity=0.170 Sum_probs=205.1
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCC-----CHHHHHHHHHHHhhcC--CCeEEecCCHHHH
Q 012363 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYY-----SIPQIELAKRLVACSF--ADRVFFSNTGTEA 167 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~-~~~~-----~~~~~~la~~l~~~~~--~~~v~~~~sG~eA 167 (465)
+|..|||+.++. +.+|.|++++.+++......+ ..+. .+...+++++|+++++ .++|++++||++|
T Consensus 17 ~~~~~Ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 90 (432)
T 3a9z_A 17 NRKVYMDYNATT------PLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTES 90 (432)
T ss_dssp -CCEECBTTTCC------CCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHH
T ss_pred CCcEEeeCCccC------CCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHH
Confidence 567889887652 578999999999887631111 1111 1224689999999987 4689999999999
Q ss_pred HHHHHHHHHH-HhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCC----CCCCCCceEeeC------CCHH
Q 012363 168 NEAAIKFARK-FQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPF----EPVMPGVNFVEY------GNIE 236 (465)
Q Consensus 168 ~~~al~~a~~-~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~------~d~~ 236 (465)
+..+++.+.. +..... .++++|++++|+||++.........-......+ ......+..+|. .|++
T Consensus 91 ~~~~~~~~~~~~~~~~~----~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~ 166 (432)
T 3a9z_A 91 NNLVIHSTVRCFHEQQT----LQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVE 166 (432)
T ss_dssp HHHHHHHHHHHHHHHHH----HC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHH
T ss_pred HHHHHHHHHhhhhhccc----cCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHH
Confidence 9999998742 110000 047899999999998631111100000000000 000011222222 2789
Q ss_pred HHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC----------CEEEEeccccCCCCCCccccccccCC
Q 012363 237 ATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG----------ALLVFDEVQCGLGRTGYLWAHEHYGI 306 (465)
Q Consensus 237 ~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g----------~llI~DEv~~g~gr~g~~~~~~~~~~ 306 (465)
+|++++++ ++++|++++.++++|.+.+ +++|.++|++|| ++||+||+|. +|... ..... .
T Consensus 167 ~l~~~i~~-~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~~~~~~~livDea~~-~~~~~--~~~~~--~ 236 (432)
T 3a9z_A 167 DILAAVRP-TTCLVTIMLANNETGVIMP----ISEISRRIKALNQIRAASGLPRVLVHTDAAQA-LGKRR--VDVED--L 236 (432)
T ss_dssp HHHHTCCT-TEEEEECCSBCTTTCBBCC----HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTT-TTTSC--CCHHH--H
T ss_pred HHHHhccC-CceEEEEECcccCcccccC----HHHHHHHHHhcCcccccccCCceEEEEEchhh-hCCcc--cChhh--c
Confidence 99999975 5788888887777787766 789999999999 9999999995 44321 11111 2
Q ss_pred cccEE--EecccCCCccceeeEEeCHHH-HhhccCCCC-------cCCCCChHHHHHHHHHHHHHhcC--chHHHHHHHH
Q 012363 307 FPDIM--TLAKPLAGGLPIGAALVTEKV-ASAINYGDH-------GSTFAGSPLVCNAAIAVLDKISN--PAFLASVSKK 374 (465)
Q Consensus 307 ~pdi~--t~sK~lg~G~~iG~v~~~~~i-~~~~~~~~~-------~~t~~~~~~~~~aa~a~L~~~~~--~~~~~~~~~~ 374 (465)
.+|++ +++|.+ |.++|++++++++ ...+.+..+ ..+++.|+++++++.++|+.+.+ ++..++++++
T Consensus 237 ~~d~~~~s~~K~~--g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~ 314 (432)
T 3a9z_A 237 GVDFLTIVGHKFY--GPRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRDI 314 (432)
T ss_dssp CCSEEEEEGGGTT--CCSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEehhHhc--CCcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35666 458976 4679999999876 444443211 12345688888888888886543 4566677777
Q ss_pred HHHHHHHHHHHHHcCCCc--e---eeeccceEEEEEecC---ChHHHHHHHH----HCCceEeec------------CC-
Q 012363 375 GHYFKETLKQKLARNPHV--K---DVRGLGLIIGIEFDV---SATPVVDACR----DSGLLVLTA------------GK- 429 (465)
Q Consensus 375 ~~~l~~~l~~~~~~~~~~--~---~~~~~g~~~~i~~~~---~~~~~~~~l~----~~Gv~v~~~------------~~- 429 (465)
.+++.+.|+++.. .... . .....+.+..+.+.. +..++.+.+. +.|+.+.+. +.
T Consensus 315 ~~~l~~~L~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~l~~~g~~ 393 (432)
T 3a9z_A 315 RDYLEERLEAEFG-KRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQCQTLLASVGASCHSDHEDRPSPVLLSCGIP 393 (432)
T ss_dssp HHHHHHHHHHHHG-GGEEESSCCTTCCBCTTEEEEEECSTTCCHHHHHHHCSSEECBSSCGGGGGGTTSCCHHHHHTTCC
T ss_pred HHHHHHHHHhccC-CcEEEeCCCCcccCCCCEEEEEeCCCCCcHHHHHHHhcCeEEeccccccCCCCCCccHHHHhcCCC
Confidence 7777777776421 1100 0 012345566666632 3455555442 123322221 11
Q ss_pred ----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhh
Q 012363 430 ----GNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 430 ----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
++++||+++..+|++|+++++++|+++++++++
T Consensus 394 ~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~~ 430 (432)
T 3a9z_A 394 VDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLEG 430 (432)
T ss_dssp HHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 268999999888999999999999999987754
No 156
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.93 E-value=1.6e-24 Score=220.63 Aligned_cols=336 Identities=15% Similarity=0.127 Sum_probs=213.2
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHH
Q 012363 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFA 175 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a 175 (465)
.|+.|+||.++.++.. -++++.+++. .... .+.+.+...+|+++|+++++.+++++++||++|+..+++.+
T Consensus 40 ~~~~ylD~~~~~~~~~---~~~~~~~a~~----~~~~--~y~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~al~~l 110 (456)
T 2ez2_A 40 SKDIYIDLLTDSGTNA---MSDKQWAGMM----MGDE--AYAGSENFYHLERTVQELFGFKHIVPTHQGRGAENLLSQLA 110 (456)
T ss_dssp GGGCSEECSCSSSCCC---CCHHHHHHHT----TCCC--CSSSCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHH
T ss_pred cccceeeeccccCCcc---CCHHHHHHhh----cchh--hcccChhHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHh
Confidence 4678999988765432 2466666654 2111 22345668899999999999889999999999999999876
Q ss_pred HHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCC-CCCceEee--CC-CHHHHHhhcCCCC---eE
Q 012363 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV-MPGVNFVE--YG-NIEATRKLIQPGK---TA 248 (465)
Q Consensus 176 ~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~-d~~~le~~l~~~~---~a 248 (465)
. + +++ |+.+++||+.+.......+......+..+. .+. ...+ ++ |+++|++++++++ ++
T Consensus 111 ~---~--------~gd--i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~-~~~~~~~~~d~~~l~~~i~~~t~~~~~ 176 (456)
T 2ez2_A 111 I---K--------PGQ--YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAG-LNIAFKGDIDLKKLQKLIDEKGAENIA 176 (456)
T ss_dssp C---C--------TTC--EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTT-CCCSCTTCBCHHHHHHHHHHHCGGGEE
T ss_pred C---C--------CCC--EeccccccchhHHHHHHcCCEEEEeccccccccc-ccccccCCCCHHHHHHHHHhcccccee
Confidence 4 1 456 788999987754444433322111111100 000 0011 12 8999999986322 47
Q ss_pred EEEEc-ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC----------CCCCCcccc-c-cccCCcccEEEec-
Q 012363 249 AVFVE-PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG----------LGRTGYLWA-H-EHYGIFPDIMTLA- 314 (465)
Q Consensus 249 ~vi~e-p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g----------~gr~g~~~~-~-~~~~~~pdi~t~s- 314 (465)
+|+++ |+|+.+|. +++.+++++|+++|++||++||+||+|+. +.+.|.... . +..+..+|++++|
T Consensus 177 ~v~l~~p~n~ptG~-~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~ 255 (456)
T 2ez2_A 177 YICLAVTVNLAGGQ-PVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSG 255 (456)
T ss_dssp EEEEESSBTTTTSB-CCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEET
T ss_pred EEEEeccCCCCCCc-cCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeC
Confidence 77777 66646664 66899999999999999999999999984 344453211 0 0123346888774
Q ss_pred ccCCC-ccceeeEEe-CHHHHhhccCCC---Cc-CCC-CChHHHHHH-HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Q 012363 315 KPLAG-GLPIGAALV-TEKVASAINYGD---HG-STF-AGSPLVCNA-AIAVLDKISNPAFLASVSKKGHYFKETLKQKL 386 (465)
Q Consensus 315 K~lg~-G~~iG~v~~-~~~i~~~~~~~~---~~-~t~-~~~~~~~~a-a~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~ 386 (465)
|.+++ | ++|++++ ++++++.+.... ++ .++ +.++..+.+ +.+.++.+. +++.++.+++.+++++.|.+.
T Consensus 256 kk~~~~~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~- 332 (456)
T 2ez2_A 256 KKDCLVN-IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ-YEYIEHRVKQVRYLGDKLKAA- 332 (456)
T ss_dssp TTTTCCS-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHT-
T ss_pred cccCCCC-ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHhcC-
Confidence 55544 5 6899988 678877654211 11 112 223334444 555555442 456677777777777777662
Q ss_pred HcCCCceeeeccceEEEEEec-----CChHHH-----HHHH-HHCCceEeecCC----------------CCEEEEecCC
Q 012363 387 ARNPHVKDVRGLGLIIGIEFD-----VSATPV-----VDAC-RDSGLLVLTAGK----------------GNVVRLVPPL 439 (465)
Q Consensus 387 ~~~~~~~~~~~~g~~~~i~~~-----~~~~~~-----~~~l-~~~Gv~v~~~~~----------------~~~lRi~~~~ 439 (465)
.++.. .+..|.++++.+. .+..++ .+.| .++||.+.+.+. .+.+||+++.
T Consensus 333 -g~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~ 409 (456)
T 2ez2_A 333 -GVPIV--EPVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPR 409 (456)
T ss_dssp -TCCBC--SSCCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCT
T ss_pred -CCccc--cCCCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCC
Confidence 23221 2334677777651 123344 7777 578998654221 2689999988
Q ss_pred C-CcHHHHHHHHHHHHHHHHHhh
Q 012363 440 I-ISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 440 ~-~t~e~i~~~l~~l~~~l~~~~ 461 (465)
. ++++++++++++|++++++..
T Consensus 410 ~~~t~e~i~~~~~~l~~~l~~~~ 432 (456)
T 2ez2_A 410 RVYTYAHMDVVADGIIKLYQHKE 432 (456)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTGG
T ss_pred CCCCHHHHHHHHHHHHHHHhhhh
Confidence 7 899999999999999998755
No 157
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.93 E-value=5.7e-25 Score=220.07 Aligned_cols=319 Identities=15% Similarity=0.091 Sum_probs=215.3
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHH
Q 012363 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARK 177 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~ 177 (465)
++||||..+.+. ++ |++++++.+++.... +...+...+++++++++++.+.+++++||++|+..+++.+.
T Consensus 30 ~~~id~~~~~~~--~~---~~v~~a~~~~~~~~~----y~~~~~~~~l~~~la~~~~~~~~v~~~~Gt~a~~~~l~~~~- 99 (399)
T 2oga_A 30 VPFLDLKAAYEE--LR---AETDAAIARVLDSGR----YLLGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLG- 99 (399)
T ss_dssp BCSCCHHHHHHH--TH---HHHHHHHHHHHHHTC----CSSSHHHHHHHHHHHHHTTSSEEEEESCHHHHHHHHHHHTT-
T ss_pred CcccccCcCCCC--CC---HHHHHHHHHHHhcCC----CCCchhHHHHHHHHHHHHCCCeEEEecCHHHHHHHHHHHhC-
Confidence 568999887653 32 899999999887531 22346688999999999997788999999999999998762
Q ss_pred HhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCC
Q 012363 178 FQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQG 257 (465)
Q Consensus 178 ~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~ 257 (465)
. .++++|++.+++|++....+...+.... . .+..++. ...|+++|++++++ ++++|++ +++
T Consensus 100 -~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~-~---~~~~~~~---~~~d~~~l~~~i~~-~~~~v~~--~n~ 160 (399)
T 2oga_A 100 -I--------GPGDEVIVPSHTYIASWLAVSATGATPV-P---VEPHEDH---PTLDPLLVEKAITP-RTRALLP--VHL 160 (399)
T ss_dssp -C--------CTTCEEEEESSSCTHHHHHHHHTTCEEE-E---ECBCSSS---SSBCHHHHHHHCCT-TEEEECC--BCG
T ss_pred -C--------CCcCEEEECCCccHHHHHHHHHCCCEEE-E---EecCCCC---CCcCHHHHHHhcCC-CCeEEEE--eCC
Confidence 1 1578999999999986654333222111 1 1111100 01389999999975 5677764 333
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC-CCCccccccccCCcccEEEe----cccCCC-ccceeeEEeC-H
Q 012363 258 EGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG-RTGYLWAHEHYGIFPDIMTL----AKPLAG-GLPIGAALVT-E 330 (465)
Q Consensus 258 ~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g-r~g~~~~~~~~~~~pdi~t~----sK~lg~-G~~iG~v~~~-~ 330 (465)
+|.+.+ +++|.++|++||++||+||+|+.+. ..+. ..+..+|++++ ||.+++ | ++|+++++ +
T Consensus 161 -tG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~-----~~~~~~di~~~S~~~sK~~~~~G-~~g~~~~~~~ 229 (399)
T 2oga_A 161 -YGHPAD----MDALRELADRHGLHIVEDAAQAHGARYRGR-----RIGAGSSVAAFSFYPGKNLGCFG-DGGAVVTGDP 229 (399)
T ss_dssp -GGCCCC----HHHHHHHHHHHTCEECEECTTCTTCEETTE-----ETTCTTCEEEEECCTTSSSCCSS-CCEEEEESCH
T ss_pred -cCCccC----HHHHHHHHHHcCCEEEEECcccccCccCCe-----ecccccCEEEEeCCCCccCCcCC-ceEEEEeCCH
Confidence 455544 8999999999999999999997331 1221 12333588776 499997 8 99999986 7
Q ss_pred HHHhhccCCC-C-----------cCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCcee--ee
Q 012363 331 KVASAINYGD-H-----------GSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKD--VR 396 (465)
Q Consensus 331 ~i~~~~~~~~-~-----------~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--~~ 396 (465)
++++.+.+.. . +.++..+++.++++.++++.++ .+.++.+++.+++.+.| .+.+.+.. .+
T Consensus 230 ~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~l~~~L----~~~~g~~~~~~~ 303 (399)
T 2oga_A 230 ELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLD--SWNGRRSALAAEYLSGL----AGLPGIGLPVTA 303 (399)
T ss_dssp HHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHT----TTCTTCBCCCCC
T ss_pred HHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh----ccCCCccccCCC
Confidence 8776654211 1 2334568899988888887542 34455555555554444 34332211 11
Q ss_pred ccceEE--EEEe-cCChHHHHHHHHHCCceEeecCC--------------------------CCEEEEecCCCCcHHHHH
Q 012363 397 GLGLII--GIEF-DVSATPVVDACRDSGLLVLTAGK--------------------------GNVVRLVPPLIISEQELD 447 (465)
Q Consensus 397 ~~g~~~--~i~~-~~~~~~~~~~l~~~Gv~v~~~~~--------------------------~~~lRi~~~~~~t~e~i~ 447 (465)
..+..+ .+.+ ..+..++.+.|.++||.+.+... .+.+||+++..+|++|++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~ 383 (399)
T 2oga_A 304 PDTDPVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQAL 383 (399)
T ss_dssp TTEECCCSSEEEECSSHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHH
T ss_pred CCCcceeEEEEEECCCHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHH
Confidence 122222 2333 24677899999999999876321 157999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 012363 448 QAVEILCKTLPVLDS 462 (465)
Q Consensus 448 ~~l~~l~~~l~~~~~ 462 (465)
+++++|+++++++++
T Consensus 384 ~~~~~l~~~~~~l~~ 398 (399)
T 2oga_A 384 RVIDAVREWAERVDQ 398 (399)
T ss_dssp HHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999887653
No 158
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.93 E-value=4.3e-25 Score=227.26 Aligned_cols=323 Identities=11% Similarity=0.069 Sum_probs=204.7
Q ss_pred CCHHHHHHHHHHHhhccc-ccCCC-----CCHHHHHHHHHHHhhcC----CCeEEecCCHHHHHHHHHHHHHHHhhhcCC
Q 012363 115 GDADWIKAVVDQANVLTH-VSNMY-----YSIPQIELAKRLVACSF----ADRVFFSNTGTEANEAAIKFARKFQRHSNP 184 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~-~~~~~-----~~~~~~~la~~l~~~~~----~~~v~~~~sG~eA~~~al~~a~~~t~~~~~ 184 (465)
-++++++++.+++..... ....| ..+.++++++++.+..+ .++|++|+||++|+..+++++.. .
T Consensus 107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~---- 180 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIR--N---- 180 (500)
T ss_dssp SCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCC--S----
T ss_pred CCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcC--C----
Confidence 567788888877766311 11122 22336666666665543 68999999999999999987641 1
Q ss_pred CCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCC-----Ce-EEEEEcccCCC
Q 012363 185 DSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG-----KT-AAVFVEPIQGE 258 (465)
Q Consensus 185 ~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-----~~-a~vi~ep~~~~ 258 (465)
+++.|++.+|+|+++...+...+...... ++..+..+ ..|+++|++++++. ++ ++++++|.|++
T Consensus 181 ----~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~----~~~~~~~~--~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPt 250 (500)
T 3tcm_A 181 ----EKDGILVPIPQYPLYSASIALHGGALVPY----YLNESTGW--GLETSDVKKQLEDARSRGINVRALVVINPGNPT 250 (500)
T ss_dssp ----TTEEEEEEESCCTHHHHHHHHTTCEEEEE----ECBTTTTS--BCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTT
T ss_pred ----CCCEEEEeCCCcHhHHHHHHHcCCEEEEE----ecccccCC--CCCHHHHHHHHHHHHhcCCCceEEEEECCCCCC
Confidence 58999999999998876554443222111 11111000 13899999998631 34 45566665554
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc--cccc----cccCC---ccc-EE--EecccC-C-Ccccee
Q 012363 259 GGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY--LWAH----EHYGI---FPD-IM--TLAKPL-A-GGLPIG 324 (465)
Q Consensus 259 ~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~--~~~~----~~~~~---~pd-i~--t~sK~l-g-~G~~iG 324 (465)
| .+++.+.+++|.++|++||+++|+||+|.++.+.+. ...+ ..++. ..+ ++ +|||++ | .|+|+|
T Consensus 251 G--~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G 328 (500)
T 3tcm_A 251 G--QVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGG 328 (500)
T ss_dssp C--CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCE
T ss_pred c--ccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceE
Confidence 4 345889999999999999999999999998644321 1111 11211 112 33 789999 5 499999
Q ss_pred eEEe---CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhc------------CchHHHHHHHHHHHHHHHHHHHHHcC
Q 012363 325 AALV---TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS------------NPAFLASVSKKGHYFKETLKQKLARN 389 (465)
Q Consensus 325 ~v~~---~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~------------~~~~~~~~~~~~~~l~~~l~~~~~~~ 389 (465)
|+++ ++++++.+.... ..+++.++++++++..+++..+ .+.+.++++++.+.+.+ .+.++
T Consensus 329 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~----~L~~~ 403 (500)
T 3tcm_A 329 YFEITGFSAPVREQIYKIA-SVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEH----AFNKL 403 (500)
T ss_dssp EEEEESCCTTHHHHHHHHH-HTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHH----HHHTS
T ss_pred EEEEeCCCHHHHHHHHHHH-hcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHH----HHhcC
Confidence 9998 888888775322 3456778888988888775211 12233344444444444 44445
Q ss_pred CCceeeeccc-eEEEEEecCC--------------hHHHH-HHHHHCCceEeecCC------CCEEEEecCCCCcHHHHH
Q 012363 390 PHVKDVRGLG-LIIGIEFDVS--------------ATPVV-DACRDSGLLVLTAGK------GNVVRLVPPLIISEQELD 447 (465)
Q Consensus 390 ~~~~~~~~~g-~~~~i~~~~~--------------~~~~~-~~l~~~Gv~v~~~~~------~~~lRi~~~~~~t~e~i~ 447 (465)
|.+....+.| .+.++.+..+ ...++ +.|.++||++.|+.. ...+|+++. .++++++
T Consensus 404 ~g~~~~~~~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~--~~~e~i~ 481 (500)
T 3tcm_A 404 EGITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL--PQEDKIP 481 (500)
T ss_dssp TTEECCCCCBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC--SCTTTHH
T ss_pred CCcEEecCCeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC--CCHHHHH
Confidence 5444444444 4445444211 12233 445567999997631 246899877 7899999
Q ss_pred HHHHHHHHHHHHhhh
Q 012363 448 QAVEILCKTLPVLDS 462 (465)
Q Consensus 448 ~~l~~l~~~l~~~~~ 462 (465)
+++++|.++++++.+
T Consensus 482 ~~i~~l~~~~~~~~~ 496 (500)
T 3tcm_A 482 AVISRFTVFHEAFMS 496 (500)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988754
No 159
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.93 E-value=2.4e-24 Score=215.41 Aligned_cols=292 Identities=14% Similarity=0.087 Sum_probs=200.7
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012363 134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 134 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
+..+.++...+++++++++++.+.+++++||++|+..+++.+. .++++|++.++.||+..........
T Consensus 59 ~~r~~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~~-----------~~gd~vl~~~~~~~~~~~~~~~~~~- 126 (398)
T 1gc0_A 59 YSRISNPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLL-----------RPGDEVLLGNTLYGCTFAFLHHGIG- 126 (398)
T ss_dssp ----CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEEEESSCCSHHHHHHHHTGG-
T ss_pred ccCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-----------cCCCEEEEeCCCchhHHHHHHHHHH-
Confidence 3455778899999999999987788889999999999999764 1578999999999987644321110
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012363 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
.....+.+++..|++++++++++ ++++|++++.++++|.+.+ +++|+++|++||+++|+||+|+.+
T Consensus 127 --------~~g~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~~- 192 (398)
T 1gc0_A 127 --------EFGVKLRHVDMADLQALEAAMTP-ATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVVVDNTYCTP- 192 (398)
T ss_dssp --------GGTCEEEEECTTCHHHHHHHCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTHH-
T ss_pred --------HcCCEEEEECCCCHHHHHHhcCC-CCeEEEEECCCCCCccccc----HHHHHHHHHHcCCEEEEECCCccc-
Confidence 01123455666799999999975 6888888888777787765 999999999999999999999743
Q ss_pred CCCccccccccCCcccEEEecccCCC-ccce-eeEEeCHHHHh-hccCCCCc-CCCCChHHHHHHHHHHHHHhcCchHHH
Q 012363 294 RTGYLWAHEHYGIFPDIMTLAKPLAG-GLPI-GAALVTEKVAS-AINYGDHG-STFAGSPLVCNAAIAVLDKISNPAFLA 369 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~t~sK~lg~-G~~i-G~v~~~~~i~~-~~~~~~~~-~t~~~~~~~~~aa~a~L~~~~~~~~~~ 369 (465)
..+... .++..+.+.+++|.+++ |.|+ |++++++++++ .+...... .+.+.+++.++++.++++.+ +...+
T Consensus 193 ~~~~~~---~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~ 267 (398)
T 1gc0_A 193 YLQRPL---ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTL--NLRMD 267 (398)
T ss_dssp HHCCGG---GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTH--HHHHH
T ss_pred ccCCch---hhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCCCCCHHHHHHHHhccchH--HHHHH
Confidence 222211 23444455578999996 6887 99999987665 45433233 34567888888888887643 33455
Q ss_pred HHHHHHHHHHHHHHHH----------HHcCCCce----eeeccceEEEEEecCChHHHHHHHHHCCceEee---c-----
Q 012363 370 SVSKKGHYFKETLKQK----------LARNPHVK----DVRGLGLIIGIEFDVSATPVVDACRDSGLLVLT---A----- 427 (465)
Q Consensus 370 ~~~~~~~~l~~~l~~~----------~~~~~~~~----~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~---~----- 427 (465)
+..++.+.+.+.|++. +..+|... ..++.|.++.+++........+.|.+.|+.+.. +
T Consensus 268 ~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~i~~~~~s~G~~~sl 347 (398)
T 1gc0_A 268 RHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESL 347 (398)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTHHHHHHHHHHHCSSSEECSCCSCSSCE
T ss_pred HHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCCHHHHHHHHHhCCCceeccCCCCccee
Confidence 5666666666655441 00111000 013568888888843334456666777877643 1
Q ss_pred --------------------C-CCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012363 428 --------------------G-KGNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 428 --------------------~-~~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
+ .++.+|++++...++++++.+.++|+++
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 348 AQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp EECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred eecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 0 0378999999999999999998888754
No 160
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.93 E-value=2.2e-25 Score=231.22 Aligned_cols=341 Identities=13% Similarity=0.052 Sum_probs=206.3
Q ss_pred EEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHH-Hhhc-------CCCeEEecCCHHHHHHHH
Q 012363 100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRL-VACS-------FADRVFFSNTGTEANEAA 171 (465)
Q Consensus 100 ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l-~~~~-------~~~~v~~~~sG~eA~~~a 171 (465)
++||..+. .++.+|.+++++.+.+....+....+..+.++++++.+ .+.+ ..++|++|+|+++|+..+
T Consensus 106 ~i~l~~g~----~~~~~~~~~~al~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~ 181 (546)
T 2zy4_A 106 SLSYVRDQ----LGLDPAAFLHEMVDGILGCNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYI 181 (546)
T ss_dssp HHHHHHHT----SCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHH
T ss_pred hhecccCC----CCCCChHHHHHHHHhhhcCCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHH
Confidence 46665543 45677888888888775322222223445566666554 3332 137899999999999999
Q ss_pred HHHHH--HHhhhcCCCCCCCCceEEEEcCCcccCcccccccc-CCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeE
Q 012363 172 IKFAR--KFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT-SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA 248 (465)
Q Consensus 172 l~~a~--~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a 248 (465)
++++. .++. +++.|++.+|+|+++...+...+ +..... .+..++..+. .|+++|++++..+..+
T Consensus 182 ~~~l~~~~l~~--------~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~---v~~~~~~~~~--~d~~~l~~~~~~~~k~ 248 (546)
T 2zy4_A 182 FESLKLNGLLK--------AGDKVAIGMPVFTPYIEIPELAQYALEEVA---INADPSLNWQ--YPDSELDKLKDPAIKI 248 (546)
T ss_dssp HHHHHHTTSSC--------TTCEEEEEESCCHHHHHHHHSTTSCCEEEE---EECBGGGTTB--CCHHHHGGGGSTTEEE
T ss_pred HHHhhhhhcCC--------CCCEEEEeCCCCccHHHHHHHcCCCcEEEE---EecCcccCCC--CCHHHHHHhhCCCCeE
Confidence 98642 1222 68899999999999876532211 111000 0111110000 2789999988643334
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHH--HHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCC-Cccceee
Q 012363 249 AVFVEPIQGEGGIYSATKEFLQFLRDAC--DDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGA 325 (465)
Q Consensus 249 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~--~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~ 325 (465)
+++++|.|++| .+.+.+.+++|.++| ++||++||+||+|.+|............+....+.+|||.+| .|+|+||
T Consensus 249 v~l~~p~NPtG--~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~GlRiG~ 326 (546)
T 2zy4_A 249 FFCVNPSNPPS--VKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATGWRLGV 326 (546)
T ss_dssp EEEESSCSSSC--BCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGGGCEEE
T ss_pred EEEECCCCCCC--ccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCCcceEE
Confidence 45555555554 445889999999999 889999999999998854222111111123344568999998 5999999
Q ss_pred EEeCHH-HHhhccC------------------------------------CCCcCCCCChHHHHHHHH-H-HHHHhcC-c
Q 012363 326 ALVTEK-VASAINY------------------------------------GDHGSTFAGSPLVCNAAI-A-VLDKISN-P 365 (465)
Q Consensus 326 v~~~~~-i~~~~~~------------------------------------~~~~~t~~~~~~~~~aa~-a-~L~~~~~-~ 365 (465)
++++++ +++.+.. .....+.+.+.+.+.++. . ....+.+ +
T Consensus 327 ~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~~ 406 (546)
T 2zy4_A 327 VAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEAD 406 (546)
T ss_dssp EEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTTC
T ss_pred EEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhccH
Confidence 999875 6665421 001223455666666532 1 1122222 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEecC------------------Ch-HHHHHHHHHCCceEee
Q 012363 366 AFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDV------------------SA-TPVVDACRDSGLLVLT 426 (465)
Q Consensus 366 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~------------------~~-~~~~~~l~~~Gv~v~~ 426 (465)
.+.+++++..+..++.+.+.+. .+.....+..|.++++++.. .. ..+.+.|.++||.+.|
T Consensus 407 ~~~~~~r~~~~~r~~~l~~~L~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~gV~v~p 485 (546)
T 2zy4_A 407 EYKHTLKQLIRRRETTLYRELG-MPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLP 485 (546)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGT-SSCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSCCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-CCcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHCCEEEeC
Confidence 4555555544444444444332 22211223445666777631 12 2355667789999998
Q ss_pred cCC----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012363 427 AGK----GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 427 ~~~----~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
+.. ++++|+++. ..+++++++++++|+++++++.
T Consensus 486 G~~F~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~~~ 523 (546)
T 2zy4_A 486 GRGFGSNRPSGRASLA-NLNEYEYAAIGRALRKMADELY 523 (546)
T ss_dssp SSCTTCSSCEEEEESS-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCeEEEEec-cCCHHHHHHHHHHHHHHHHHHH
Confidence 642 368999876 4589999999999999988765
No 161
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.93 E-value=5.1e-24 Score=214.10 Aligned_cols=304 Identities=21% Similarity=0.159 Sum_probs=206.6
Q ss_pred cCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 012363 111 ALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190 (465)
Q Consensus 111 ~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~ 190 (465)
.++|.+|+..+++.. ....+.+.....+...+++++++++++.+++++++||++|+..+++.+. .++
T Consensus 29 ~~~~~~~~~~~~~~~--~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~al~~l~-----------~~g 95 (412)
T 2cb1_A 29 AYGFKTLEEGQERFA--TGEGYVYARQKDPTAKALEERLKALEGALEAVVLASGQAATFAALLALL-----------RPG 95 (412)
T ss_dssp BCCCSSHHHHHHHHH--HCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTC-----------CTT
T ss_pred eeecCChHHHHHHhc--cccCcCcCCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-----------CCC
Confidence 467777766555443 2333334444567789999999999998899999999999999998663 158
Q ss_pred ceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 012363 191 TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQ 270 (465)
Q Consensus 191 ~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~ 270 (465)
++|++.++.|++......... ......+.+++. |+++|++++++ ++++|++++.++++|.+.+ ++
T Consensus 96 d~vi~~~~~~~~~~~~~~~~~---------~~~g~~~~~~~~-~~~~l~~~i~~-~~~~v~~~~~~n~~G~~~~----l~ 160 (412)
T 2cb1_A 96 DEVVAAKGLFGQTIGLFGQVL---------SLMGVTVRYVDP-EPEAVREALSA-KTRAVFVETVANPALLVPD----LE 160 (412)
T ss_dssp CEEEEETTCCHHHHHHHHHTT---------TTTTCEEEEECS-SHHHHHHHCCT-TEEEEEEESSCTTTCCCCC----HH
T ss_pred CEEEEeCCCchhHHHHHHHHH---------HHcCCEEEEECC-CHHHHHHHhcc-CCeEEEEeCCCCCCccccc----HH
Confidence 899999999987543221100 011123344554 59999999975 6788888888887787765 99
Q ss_pred HHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEE--ecccCCC-ccceeeEEeCH-----------------
Q 012363 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAG-GLPIGAALVTE----------------- 330 (465)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~lg~-G~~iG~v~~~~----------------- 330 (465)
+|+++|++||+++|+||+|++++..... ....+|+++ ++|.+++ |.|+|++++.+
T Consensus 161 ~i~~l~~~~~~~li~D~~~~~~~~~~~~-----~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 235 (412)
T 2cb1_A 161 ALATLAEEAGVALVVDNTFGAAGALCRP-----LAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLK 235 (412)
T ss_dssp HHHHHHHHHTCEEEEECGGGTTTTSCCG-----GGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC---
T ss_pred HHHHHHHHcCCEEEEECCCccccccCCc-----cccCCeEEEECCcccccCCCCcEEEEEEecccccccccccccccccc
Confidence 9999999999999999999866322211 123467765 7899986 78899887644
Q ss_pred -----------HHHhhccCCC-CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceee---
Q 012363 331 -----------KVASAINYGD-HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDV--- 395 (465)
Q Consensus 331 -----------~i~~~~~~~~-~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--- 395 (465)
++.+.++... ....+..+|..++.+...++.+ +...++..++.+++.+.|. +++.+..+
T Consensus 236 g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l--~~~~~~~~~~~~~l~~~L~----~~~~v~~v~~p 309 (412)
T 2cb1_A 236 GQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLETV--ALRVARMSETARFLAERLQ----GHPKVKALRYP 309 (412)
T ss_dssp ----HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHHH----TCTTCSEEECT
T ss_pred ccchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCchH--HHHHHHHHHHHHHHHHHHH----cCCCeeEEECC
Confidence 3333332211 1112345677776666666543 2334445556666655554 34433322
Q ss_pred ---------------eccceEEEEEecCChHHHHHHHHHCCceEeecC-----------------------------CCC
Q 012363 396 ---------------RGLGLIIGIEFDVSATPVVDACRDSGLLVLTAG-----------------------------KGN 431 (465)
Q Consensus 396 ---------------~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~-----------------------------~~~ 431 (465)
++.|.++.+.+ .+...+.+.|.+.||.+ .+. ..+
T Consensus 310 ~~~~~p~~~~~~~~~~~~~~iv~~~~-~~~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~ 387 (412)
T 2cb1_A 310 GLPEDPAHRNARKYLASGGPILTLDL-GDLERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPG 387 (412)
T ss_dssp TSTTCTTHHHHHHHCSSSCSEEEEEC-SSHHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTT
T ss_pred CCCCCccHHHHHHhCCCCceEEEEEe-CCHHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCC
Confidence 35678888888 56667777787889887 331 036
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHH
Q 012363 432 VVRLVPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 432 ~lRi~~~~~~t~e~i~~~l~~l~~ 455 (465)
.+|++++...++++++.++++|++
T Consensus 388 ~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 388 LVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp EEEEECCSSCHHHHHHHHHHHHHC
T ss_pred eEEEEeccCCHHHHHHHHHHHHhh
Confidence 899999999999999999888864
No 162
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.93 E-value=2e-24 Score=215.50 Aligned_cols=285 Identities=16% Similarity=0.151 Sum_probs=200.2
Q ss_pred cccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccccc
Q 012363 132 HVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT 211 (465)
Q Consensus 132 ~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~ 211 (465)
+.+..+.++...+++++|+++++.+.+++++||++|+..+++.+. .++++||+.++.||+.........
T Consensus 58 ~~y~r~~~~~~~~l~~~la~~~g~~~~~~~~sGt~A~~~al~~~~-----------~~gd~Vi~~~~~y~~~~~~~~~~~ 126 (392)
T 3qhx_A 58 YEYARTGNPTRTALEAALAAVEDAAFGRAFSSGMAAADCALRAML-----------RPGDHVVIPDDAYGGTFRLIDKVF 126 (392)
T ss_dssp BCBTTTCCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEEEETTCCHHHHHHHHHTG
T ss_pred ccccCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-----------CCCCEEEEeCCCcchHHHHHHHHH
Confidence 334556778889999999999998899999999999999999764 158899999999987653321110
Q ss_pred CCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC
Q 012363 212 SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291 (465)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g 291 (465)
......+.+++.+|+++|++++++ ++++|++++.++++|.+.+ +++|+++|++||+++|+||+|+.
T Consensus 127 ---------~~~g~~~~~v~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~----l~~i~~la~~~g~~li~D~~~~~ 192 (392)
T 3qhx_A 127 ---------TGWNVEYTPVALADLDAVRAAIRP-TTRLIWVETPTNPLLSIAD----IAGIAQLGADSSAKVLVDNTFAS 192 (392)
T ss_dssp ---------GGGTCEEEEECTTCHHHHHHHCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTC
T ss_pred ---------HhcCcEEEEeCCCCHHHHHHhhCC-CCeEEEEECCCCCCcEEec----HHHHHHHHHHcCCEEEEECCCcc
Confidence 111234566777899999999975 6888889988888887765 99999999999999999999974
Q ss_pred CCCCCccccccccCCcccEEE--ecccCCC-c-cceeeEEeC-HHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCch
Q 012363 292 LGRTGYLWAHEHYGIFPDIMT--LAKPLAG-G-LPIGAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPA 366 (465)
Q Consensus 292 ~gr~g~~~~~~~~~~~pdi~t--~sK~lg~-G-~~iG~v~~~-~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~ 366 (465)
+ .. ....+..+|+++ ++|.+++ | +++|+++++ +++++.+....+..++..+|+.++++...++.+ +.
T Consensus 193 ~-~~-----~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l--~~ 264 (392)
T 3qhx_A 193 P-AL-----QQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKTL--VL 264 (392)
T ss_dssp T-TT-----CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTH--HH
T ss_pred c-cc-----CChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHH--HH
Confidence 3 21 222234567775 8899996 5 789999997 688777754444456677888888887777643 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCceee------------------eccceEEEEEecC---ChHHHHHHHHHCCceEe
Q 012363 367 FLASVSKKGHYFKETLKQKLARNPHVKDV------------------RGLGLIIGIEFDV---SATPVVDACRDSGLLVL 425 (465)
Q Consensus 367 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~------------------~~~g~~~~i~~~~---~~~~~~~~l~~~Gv~v~ 425 (465)
..++..++.+++.+.| .++|.+..+ ++.|.++++++.. ....+...|...|+.+.
T Consensus 265 ~~~~~~~~~~~l~~~L----~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~~~~s 340 (392)
T 3qhx_A 265 RMQRHSENAAAVAEFL----AEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAES 340 (392)
T ss_dssp HHHHHHHHHHHHHHHH----HTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSEECSC
T ss_pred HHHHHHHHHHHHHHHH----hcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCceECCC
Confidence 3444555555555544 344433222 5568899999943 23455555554554433
Q ss_pred ecC-----------------------CCCEEEEecCCCCcHHHHHHHHHHH
Q 012363 426 TAG-----------------------KGNVVRLVPPLIISEQELDQAVEIL 453 (465)
Q Consensus 426 ~~~-----------------------~~~~lRi~~~~~~t~e~i~~~l~~l 453 (465)
.++ .++.+||++....++++++.+.++|
T Consensus 341 ~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 341 LGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQAL 391 (392)
T ss_dssp CCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred CCCCCceeeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence 221 1367999988877777666665554
No 163
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.93 E-value=6.2e-25 Score=223.17 Aligned_cols=290 Identities=14% Similarity=0.134 Sum_probs=181.6
Q ss_pred HHHHHHHHHhhc-C-------CCeEEe--cCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccc---
Q 012363 142 QIELAKRLVACS-F-------ADRVFF--SNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL--- 208 (465)
Q Consensus 142 ~~~la~~l~~~~-~-------~~~v~~--~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~--- 208 (465)
..++++.+++++ + .++|++ |+||++|+.+++.+...+. ++++|++.+|+|+++...+.
T Consensus 96 ~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~---------~gd~Vlv~~p~~~~~~~~~~~~~ 166 (448)
T 3meb_A 96 FPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWM---------PKAEFYMPSTTWPNHYGIYDKVF 166 (448)
T ss_dssp CHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHC---------TTCCEEEESSCCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHHHHHhC---------CCCEEEECCCCCHhHHHHHHhhH
Confidence 445666666554 4 368999 9999999998665443332 58899999999988875554
Q ss_pred -cccCCCCcCCCCCCC-CCC--ceEeeCCCHHHHHhhcCC--CCeEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHhCC
Q 012363 209 -ALTSKEHYRSPFEPV-MPG--VNFVEYGNIEATRKLIQP--GKTAAVF-VEPIQGEGGIYSATKEFLQFLRDACDDAGA 281 (465)
Q Consensus 209 -~~~~~~~~~~~~~~~-~~~--~~~~~~~d~~~le~~l~~--~~~a~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~ 281 (465)
..+...... +. ..+ .. -|+++|++.++. .+.++++ ++|.|++ |. .++.+.+++|.++|++||+
T Consensus 167 ~~~G~~v~~~----~~~~~~~~~~----~d~e~l~~~l~~~~~~~~~v~~~~p~NPt-G~-~~~~~~l~~i~~l~~~~~~ 236 (448)
T 3meb_A 167 NKLKVPYKEY----TYLRKDGELE----IDFSNTKKDIQSAPEKSIFLFHACAHNPS-GI-DFTEAQWKELLPIMKEKKH 236 (448)
T ss_dssp CTTTSCCEEE----CCBCTTSCSS----BCHHHHHHHHHHSCTTCEEEEESSSCTTT-CC-CCCHHHHHHHHHHHHHHTC
T ss_pred HhCCCeEEEE----eccccccCCC----cCHHHHHHHHHhCCCCcEEEEeCCCCCCC-Cc-CCCHHHHHHHHHHHHHCCC
Confidence 333221111 11 111 11 189999999872 2344444 4555544 43 4688999999999999999
Q ss_pred EEEEeccccCCCCCCc---ccccccc-CCccc---EEEecccCC-CccceeeE--Ee--------C-H----HHHhhccC
Q 012363 282 LLVFDEVQCGLGRTGY---LWAHEHY-GIFPD---IMTLAKPLA-GGLPIGAA--LV--------T-E----KVASAINY 338 (465)
Q Consensus 282 llI~DEv~~g~gr~g~---~~~~~~~-~~~pd---i~t~sK~lg-~G~~iG~v--~~--------~-~----~i~~~~~~ 338 (465)
++|+||+|.+|++.+. .+....+ +..++ +.+|||.+| .|+|+||+ ++ + + ++++.+..
T Consensus 237 ~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~ 316 (448)
T 3meb_A 237 IAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTL 316 (448)
T ss_dssp EEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHH
T ss_pred EEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHH
Confidence 9999999999876541 1222211 22234 557999999 49999998 66 3 4 56555543
Q ss_pred CCCcCCCCChHHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHHHHHcCCC------ceee-eccceEEE
Q 012363 339 GDHGSTFAGSPLVCNAAIAVLDKIS--------NPAFLASVSKKGHYFKETLKQKLARNPH------VKDV-RGLGLIIG 403 (465)
Q Consensus 339 ~~~~~t~~~~~~~~~aa~a~L~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~~~~~------~~~~-~~~g~~~~ 403 (465)
.....+.+.+.+++.++.++|+... -++..++++++.+++.+.|+++ ..+. +... +..|.+.+
T Consensus 317 ~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~--~~~~~~~~~~~~~~~~~~g~~~~ 394 (448)
T 3meb_A 317 QIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKR--KTPGPGSKGTWDHILTAIGMFTF 394 (448)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCCCSTTTCCCTHHHHCCSSEEE
T ss_pred HHhcccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CCCCcCcccccceeCCCceEEEe
Confidence 2234455677888888888775321 0223344444444444444432 1122 2222 23355555
Q ss_pred EEecCChHHHHHHH-HHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012363 404 IEFDVSATPVVDAC-RDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 404 i~~~~~~~~~~~~l-~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
..+ . .+++..| .++||++.++. .||+++ ..++++|++++++|+++++++
T Consensus 395 ~~~--~-~~~~~~ll~~~gV~v~~G~----gRis~a-~~~~~~i~~~~~~l~~~l~~~ 444 (448)
T 3meb_A 395 TGL--T-PEHVDYLKEKWSIYLVKAG----GRMSMC-GLTESNCDYVAEAIHDAVTKL 444 (448)
T ss_dssp CCC--C-HHHHHHHHHHHCEEECSGG----GEEEGG-GCCTTTHHHHHHHHHHHHHHS
T ss_pred cCC--C-HHHHHHHHHhCCEEEeCCC----cEEEEe-cCCHHHHHHHHHHHHHHHHhc
Confidence 444 3 4566666 46799998853 288775 346777999999999998754
No 164
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.93 E-value=7.5e-25 Score=219.25 Aligned_cols=329 Identities=14% Similarity=0.094 Sum_probs=210.7
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHh-hccccc--C-CC-CCHHHHHH----HHHHHhhcCCCe-EEecCCHHHHH
Q 012363 99 EYLDLSSGIAVNALGHGDADWIKAVVDQAN-VLTHVS--N-MY-YSIPQIEL----AKRLVACSFADR-VFFSNTGTEAN 168 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~-~~~~~~--~-~~-~~~~~~~l----a~~l~~~~~~~~-v~~~~sG~eA~ 168 (465)
.++|+.++.+ + +|+|++|+.+++. ....++ . .+ ..+...++ +++++++++.+. .+++++|++|+
T Consensus 25 ~~~~~~~~~~---~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~~~i~~~sGt~a~ 98 (405)
T 2vi8_A 25 KIELIASENF---V---SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQAN 98 (405)
T ss_dssp SEECCTTCCC---C---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHH
T ss_pred ceeeccCccc---C---CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceEEEecCcHHHH
Confidence 4677765432 3 8999999999885 322111 1 11 22333444 468898888544 45567789999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccc--cccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCC
Q 012363 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL--ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGK 246 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 246 (465)
..+++.+. .++++|++.+++|++...... ...+.. ......+..+.. ...|+++|++++++.+
T Consensus 99 ~~a~~~~~-----------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~---~~~d~~~l~~~i~~~~ 163 (405)
T 2vi8_A 99 MAVYFTVL-----------EHGDTVLGMNLSHGGHLTHGSPVNFSGVQ-YNFVAYGVDPET---HVIDYDDVREKARLHR 163 (405)
T ss_dssp HHHHHHHC-----------CTTCEEEEECGGGTCCTTTTCTTSHHHHH-SEEEEECBCTTT---CSBCHHHHHHHHHHHC
T ss_pred HHHHHHhc-----------CCCCEEEEecccccchhcccchhhhccce-eEEEeccccccc---CCcCHHHHHHHHHhcC
Confidence 99999774 158899999998766542111 111110 000000100000 0138999999986424
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCC-cccEE--EecccCCCccce
Q 012363 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI-FPDIM--TLAKPLAGGLPI 323 (465)
Q Consensus 247 ~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~-~pdi~--t~sK~lg~G~~i 323 (465)
+++|++.|.+. |...+ +++|+++|++||++||+||+|+ +|+.+.... ...+ .+|++ ++||+++|+..
T Consensus 164 ~~~v~~~~~~~--~~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~~~~~--~~~~~~~di~~~s~sK~~~g~~g- 233 (405)
T 2vi8_A 164 PKLIVAAAAAY--PRIID----FAKFREIADEVGAYLMVDMAHI-AGLVAAGLH--PNPVPYAHFVTTTTHKTLRGPRG- 233 (405)
T ss_dssp CSEEEECCSSC--CSCCC----HHHHHHHHHHHTCEEEEECTTT-HHHHHTTSS--CCSTTTCSEEEEESSSTTCCCSC-
T ss_pred CeEEEEeCCCC--CccCC----HHHHHHHHHHcCCEEEEEcccc-ccccccCcC--CCccccCCEEEEeccccCCCCCC-
Confidence 56777755332 32222 8999999999999999999998 433322111 1111 36766 78999985433
Q ss_pred eeEEeCHHHHhhccCCCCcCCCCC-hHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccc
Q 012363 324 GAALVTEKVASAINYGDHGSTFAG-SPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLG 399 (465)
Q Consensus 324 G~v~~~~~i~~~~~~~~~~~t~~~-~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g 399 (465)
|++++++++++.+.+.....++++ ++..++++.++++.+.+ ++..++++++.+++.+.|+++ .+.... ..+.+
T Consensus 234 G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~-~~~~~ 310 (405)
T 2vi8_A 234 GMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE--GFTLVS-GGTDN 310 (405)
T ss_dssp EEEEECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--TCEEGG-GSCSS
T ss_pred eEEEEcHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC--CCeEec-CCCCc
Confidence 999999998887754322233443 56677777788876544 456667777777777777653 222111 12457
Q ss_pred eEEEEEec---CChHHHHHHHHHCCceEeecC---------CCCEEEEecCC----CCcHHHHHHHHHHHHHHHHHhh
Q 012363 400 LIIGIEFD---VSATPVVDACRDSGLLVLTAG---------KGNVVRLVPPL----IISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 400 ~~~~i~~~---~~~~~~~~~l~~~Gv~v~~~~---------~~~~lRi~~~~----~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
.++++.+. .+..++.+.|.++||.+.++. .++.+|++++. .++++++++++++|++++++++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~~ 388 (405)
T 2vi8_A 311 HLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNVG 388 (405)
T ss_dssp SEEEEECGGGTCCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCTT
T ss_pred eEEEEEccCCCCCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhccc
Confidence 88888874 256788899999999998752 13679999886 5789999999999999987664
No 165
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.7e-24 Score=221.42 Aligned_cols=328 Identities=15% Similarity=0.087 Sum_probs=210.3
Q ss_pred CCCHHHHHHHHHHHhhccccc--CCCCC----HHHHHHHHHHHhhcCC----CeEEecCCHHHHHHHHHHHHHHHhhhcC
Q 012363 114 HGDADWIKAVVDQANVLTHVS--NMYYS----IPQIELAKRLVACSFA----DRVFFSNTGTEANEAAIKFARKFQRHSN 183 (465)
Q Consensus 114 h~~p~v~~a~~~~~~~~~~~~--~~~~~----~~~~~la~~l~~~~~~----~~v~~~~sG~eA~~~al~~a~~~t~~~~ 183 (465)
++++.+.+++.+++....... .+... ..+.++++++++.++. +.+++++||++|+..++++++.++....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~ 154 (497)
T 3mc6_A 75 HGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHR 154 (497)
T ss_dssp CCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcC
Confidence 456889999999887643221 11112 2255778888888873 4899999999999999999986543111
Q ss_pred CCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCC-CceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcc
Q 012363 184 PDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP-GVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIY 262 (465)
Q Consensus 184 ~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~ 262 (465)
+. +++.|++..++|+.+...+...+.... . .+... +.. .|+++|++++++ ++++|+++..++..|.+
T Consensus 155 g~---~~~~Vi~~~~~h~~~~~~~~~~G~~~~-~---v~~~~~~~~----~d~~~l~~~i~~-~~~~v~~~~p~nptG~~ 222 (497)
T 3mc6_A 155 GI---TEPEIIAPVTAHAGFDKAAYYFGMKLR-H---VELDPTTYQ----VDLGKVKKFINK-NTVLLVGSAPNFPHGIA 222 (497)
T ss_dssp CC---SSCEEEEETTSCHHHHHHHHHSCCEEE-E---ECBCTTTCS----BCTTTTGGGCCS-SEEEEEEETTCTTTCCC
T ss_pred CC---CCceEEEeCCccHHHHHHHHHcCCeEE-E---EecCcccCc----CCHHHHHHHHhh-CCEEEEEECCCCCCCcC
Confidence 10 246899988888765543333221111 1 11111 111 268999999975 56777777766666776
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEeccccCCCCC-----C--c--cccccccCCcccEEE--ecccCCCccceeeEEeCHH
Q 012363 263 SATKEFLQFLRDACDDAGALLVFDEVQCGLGRT-----G--Y--LWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTEK 331 (465)
Q Consensus 263 ~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~-----g--~--~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~~ 331 (465)
.+ +++|+++|++||++||+||+|.++.+. | . .+.....++ |+++ ++|.+.+|.++|+++++++
T Consensus 223 ~~----l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~--d~~~~s~~K~l~~~~~~g~~~~~~~ 296 (497)
T 3mc6_A 223 DD----IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGV--TSISCDTHKYGFAPKGSSVIMYRNS 296 (497)
T ss_dssp CS----CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTC--CEEEEETTTTTCCCSSCEEEECSSH
T ss_pred CC----HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCC--cEEEECchhhcCCCCCceeEEecCH
Confidence 55 889999999999999999999864321 1 1 122233343 6655 4598878899999999876
Q ss_pred HHhhccC----CCCcC-----CCC--ChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCceee-e
Q 012363 332 VASAINY----GDHGS-----TFA--GSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKDV-R 396 (465)
Q Consensus 332 i~~~~~~----~~~~~-----t~~--~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~ 396 (465)
.+..... ....+ ++. .+....++..++++.+.. +++.++..++.+++++.|++. .+.+..+ +
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~---~~g~~~~~~ 373 (497)
T 3mc6_A 297 DLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQEN---IPDLDIMGN 373 (497)
T ss_dssp HHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---CTTCEECSC
T ss_pred HHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc---CCCEEEecC
Confidence 6554321 11111 111 122223444444554433 344555666666666666552 2332222 3
Q ss_pred ccceEEEEEec-CChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhhc
Q 012363 397 GLGLIIGIEFD-VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 397 ~~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
+.+.++.+... .+..++.+.|.++||.+........+|++++ .+|++++++++++|+++++++.++
T Consensus 374 ~~~~~v~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~-~~t~e~i~~~~~~L~~~l~~~~~~ 440 (497)
T 3mc6_A 374 PRYSVISFSSKTLNIHELSDRLSKKGWHFNALQKPVALHMAFT-RLSAHVVDEICDILRTTVQELKSE 440 (497)
T ss_dssp CCSSEEEEECTTTTHHHHHHHHHTTTCBCEECCSSCCEEEECC-TTTTCTHHHHHHHHHHHHHHHTCC
T ss_pred CCeeEEEEeCCCCCHHHHHHHHHhCCEEEecCCCCCeEEEEEe-CCCHHHHHHHHHHHHHHHHHHHhC
Confidence 45666666653 4678899999999999887654456899988 789999999999999999887654
No 166
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.93 E-value=3.2e-24 Score=214.57 Aligned_cols=331 Identities=12% Similarity=0.047 Sum_probs=195.4
Q ss_pred EEecccCcccccCCCC--CHHHHHHHHHHHhh-cccccC--CCCCHHHHHHHHHHHhhcC----CCeEEe--cCCHHHHH
Q 012363 100 YLDLSSGIAVNALGHG--DADWIKAVVDQANV-LTHVSN--MYYSIPQIELAKRLVACSF----ADRVFF--SNTGTEAN 168 (465)
Q Consensus 100 ylD~~~~~~~~~lGh~--~p~v~~a~~~~~~~-~~~~~~--~~~~~~~~~la~~l~~~~~----~~~v~~--~~sG~eA~ 168 (465)
.|||..+.+....++. .|.+.+++.+.+.. ....+. .+..+.++++++++.+.++ .++|++ |+||++|+
T Consensus 30 ~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al 109 (401)
T 7aat_A 30 KMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSL 109 (401)
T ss_dssp CEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHH
T ss_pred ceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchHHH
Confidence 5777777652223332 24678877776553 111111 1222346666666665544 788977 99999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCC--CCceEeeCCCHHHHHhhcC--C
Q 012363 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM--PGVNFVEYGNIEATRKLIQ--P 244 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~le~~l~--~ 244 (465)
..+++++..+++ ++++|++.+|+|+++.......+...... +.. .+... |++++++.++ .
T Consensus 110 ~~~~~~l~~~~~--------~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~----d~~~l~~~l~~~~ 173 (401)
T 7aat_A 110 RVGANFLQRFFK--------FSRDVYLPKPSWGNHTPIFRDAGLQLQAY----RYYDPKTCSL----DFTGAMEDISKIP 173 (401)
T ss_dssp HHHHHHHHHHCT--------TCCEEEEEESCCTTHHHHHHHTTCEEEEE----ECEETTTTEE----CHHHHHHHHTTSC
T ss_pred HHHHHHHHHhcc--------CCCEEEEcCCCchhHHHHHHHcCCeeEee----eeeccccCcc----CHHHHHHHHHhCC
Confidence 999988776553 68999999999988865544333211110 110 01111 6776666664 2
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc---ccccc----ccCCcccEEEecccC
Q 012363 245 GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY---LWAHE----HYGIFPDIMTLAKPL 317 (465)
Q Consensus 245 ~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~---~~~~~----~~~~~pdi~t~sK~l 317 (465)
.++++|++...++++|. .++.+.+++|.++|++||+++|+||+|.+|+..+. ..... ..+...-+.++||.+
T Consensus 174 ~~~~~v~i~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~ 252 (401)
T 7aat_A 174 EKSIILLHACAHNPTGV-DPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNM 252 (401)
T ss_dssp TTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTS
T ss_pred CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCccc
Confidence 34555555444444444 46889999999999999999999999998866542 11121 112223345899999
Q ss_pred C-CccceeeEEe---CHH----HHhhccCCCCcCCCCChHHHHHHHHHHHHHh------c--CchHHHHHHHHHHHHHHH
Q 012363 318 A-GGLPIGAALV---TEK----VASAINYGDHGSTFAGSPLVCNAAIAVLDKI------S--NPAFLASVSKKGHYFKET 381 (465)
Q Consensus 318 g-~G~~iG~v~~---~~~----i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~------~--~~~~~~~~~~~~~~l~~~ 381 (465)
+ .|+|+||+++ +++ +...+.......+.+.+.+++.++..+++.. . .++..++++++.+++.+.
T Consensus 253 ~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ 332 (401)
T 7aat_A 253 GLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSN 332 (401)
T ss_dssp CCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 5999999886 555 3333332222334455566666666556421 0 122334444455555555
Q ss_pred HHHHHHcC-CCceee-eccceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012363 382 LKQKLARN-PHVKDV-RGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 382 l~~~~~~~-~~~~~~-~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
|++. .. +.+... +..|.+.++.+ +...+...+.++||.+.++ +||+++.. ++++|++++++|++++
T Consensus 333 L~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~gi~v~~~-----~Ris~~~~-~~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 333 LKKE--GSSHNWQHITDQIGMFCFTGL--KPEQVERLTKEFSIYMTKD-----GRISVAGV-ASSNVGYLAHAIHQVT 400 (401)
T ss_dssp HHHT--TCCSCCHHHHHCCSSEEECCC--CHHHHHHHHHHHCEECCTT-----CEEEGGGC-CTTTHHHHHHHHHHHH
T ss_pred HHhc--CCCCCCceecCCcceEEecCC--CHHHHHHHHHhCCEeccCC-----CeEEeccC-ChhhHHHHHHHHHHHh
Confidence 5442 11 112222 23345555443 3444433345789998753 58888754 5556999999998875
No 167
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.93 E-value=3.3e-25 Score=222.44 Aligned_cols=326 Identities=9% Similarity=0.047 Sum_probs=202.2
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhc-C-------CCeEE--ecCCHHHHH
Q 012363 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-F-------ADRVF--FSNTGTEAN 168 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~-~-------~~~v~--~~~sG~eA~ 168 (465)
.+|||..+.+. -..++|.+.+++.++.....+ .+.+.....++++.+++++ + .++|. .+++|++|+
T Consensus 42 ~~i~l~~g~~~--d~~~~~~v~~a~~~a~~~~~~--~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~ 117 (409)
T 4eu1_A 42 RKVNLSIGVYR--DDADQPFVLECVKQATLGTNM--DYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGAL 117 (409)
T ss_dssp SCEECCCSSCC--CTTSCCCCCHHHHTCCCCSCC--CCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHH
T ss_pred CceeeeeeEEE--CCCCCEeecHHHHhcCccccc--cCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHH
Confidence 46888887641 123667788888877322211 1112222345555555543 3 45674 499999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCC--CCCceEeeCCCHHHHHhhcC--C
Q 012363 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV--MPGVNFVEYGNIEATRKLIQ--P 244 (465)
Q Consensus 169 ~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~le~~l~--~ 244 (465)
.++..+++.+++ ++++|++.+|+|+++...+...+...... +. ..+... |+++|++.++ +
T Consensus 118 ~~~~~~~~~~~~--------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~----~~~~~~~~~~----d~~~l~~~l~~~~ 181 (409)
T 4eu1_A 118 RIGGDLLNRFVA--------NCNRIYGPDVGYPNHESIFAKAGMELTPY----SYYDPATKGL----NLAGMLECLDKAP 181 (409)
T ss_dssp HHHHHHGGGTSS--------SCCEEEEESSCCTHHHHHHHHTTCEEEEE----CCEETTTTEE----CHHHHHHHHHHSC
T ss_pred HHHHHHHHHhcC--------CCCEEEEeCCCcHhHHHHHHHcCCeEEEE----EeecCcCCcC----cHHHHHHHHHhCC
Confidence 988776665553 57999999999988865554433221111 11 011111 8999999985 2
Q ss_pred CCeEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc---ccccc-ccCCcccE---EEeccc
Q 012363 245 GKTAAVF-VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY---LWAHE-HYGIFPDI---MTLAKP 316 (465)
Q Consensus 245 ~~~a~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~---~~~~~-~~~~~pdi---~t~sK~ 316 (465)
.+.++++ ++|.|++| ..++.+.+++|.++|++||+++|+||+|.+|++.+. ..... ..+..+++ .+|||.
T Consensus 182 ~~~~~i~~~~p~NPtG--~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 259 (409)
T 4eu1_A 182 EGSVILVHACAHNPTG--VDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKN 259 (409)
T ss_dssp TTCEEEEESSSCTTTC--CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTT
T ss_pred CCcEEEEECCCCCCCC--CCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCccc
Confidence 3444544 56665554 346889999999999999999999999999876551 11221 12333444 479999
Q ss_pred CC-CccceeeE---EeCHH----HHhhccCCCCcCCCCChHHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHHH
Q 012363 317 LA-GGLPIGAA---LVTEK----VASAINYGDHGSTFAGSPLVCNAAIAVLDKIS--------NPAFLASVSKKGHYFKE 380 (465)
Q Consensus 317 lg-~G~~iG~v---~~~~~----i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~--------~~~~~~~~~~~~~~l~~ 380 (465)
+| .|+|+||+ +++++ +++.+.......+++.+++++.++.++|+... .++..++++++.+++.+
T Consensus 260 ~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 339 (409)
T 4eu1_A 260 FGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVS 339 (409)
T ss_dssp SSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 59999995 56677 55555432234556677899999888887321 12334444555555555
Q ss_pred HHHHHHHcCCC-ceeeec-cceEEEEEecCChHHHHHHHH-HCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012363 381 TLKQKLARNPH-VKDVRG-LGLIIGIEFDVSATPVVDACR-DSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 381 ~l~~~~~~~~~-~~~~~~-~g~~~~i~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
.|++. ..+. +....+ .|.+.++.+ + .+++..|+ ++||++.|+ .||+++ ..+++++++++++|++++
T Consensus 340 ~L~~~--g~~~~~~~~~~~~~~~~~~~~--~-~~~~~~ll~~~gv~v~p~-----~Ri~~~-~~~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 340 ELKAC--GSVHDWSHIERQVGMMAYTGL--T-REQVELLRSEYHIYMTLN-----GRAAVS-GLNSTNVEYVSQAIHNVT 408 (409)
T ss_dssp HHHHT--TCCSCCHHHHHSCSSEEECCC--C-HHHHHHHHHHHCEECCTT-----CEEEGG-GCCTTTHHHHHHHHHHHH
T ss_pred HHHhc--CCCCCcceecCCceEEEEeCC--C-HHHHHHHHHcCCEEEcCC-----CEEEEE-ecCHhhHHHHHHHHHHHh
Confidence 55442 1111 222223 344555433 3 34566666 569999875 378776 456777999999998875
No 168
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.93 E-value=1.7e-24 Score=214.40 Aligned_cols=295 Identities=15% Similarity=0.176 Sum_probs=197.8
Q ss_pred HHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcC
Q 012363 119 WIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN 198 (465)
Q Consensus 119 v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~ 198 (465)
+.+++.+.+... .+++.+...+++++++++++.+++++++||++|+..+++.+. . .++++|++.++
T Consensus 21 ~~~~~~~~~~~~----~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~~~~~~--~--------~~gd~v~~~~~ 86 (374)
T 3uwc_A 21 YLNDLREFIKTA----DFTLGAELEKFEKRFAALHNAPHAIGVGTGTDALAMSFKMLN--I--------GAGDEVITCAN 86 (374)
T ss_dssp HHHHHHHHHHHT----CCSSCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTT--C--------CTTCEEEEESS
T ss_pred HHHHHHHHHHcC----CcccChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcC--C--------CCCCEEEECCC
Confidence 566666655543 234567789999999999998899999999999999998762 1 26889999999
Q ss_pred CcccCccccccccCCCCcCCCCCCCCCCceEeeCC-----CHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHH
Q 012363 199 SFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLR 273 (465)
Q Consensus 199 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~ 273 (465)
+||+....+...+.. +..++.+ |+++|++++++ ++++|+ |++++ |...+ +++|.
T Consensus 87 ~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~--~~n~~-G~~~~----~~~i~ 145 (374)
T 3uwc_A 87 TFIASVGAIVQAGAT-------------PVLVDSENGYVIDPEKIEAAITD-KTKAIM--PVHYT-GNIAD----MPALA 145 (374)
T ss_dssp SCHHHHHHHHHTTCE-------------EEEECBCTTSSBCGGGTGGGCCT-TEEEEC--CBCGG-GCCCC----HHHHH
T ss_pred ccHHHHHHHHHcCCE-------------EEEEecCCCCCcCHHHHHHhCCC-CceEEE--EeCCc-CCcCC----HHHHH
Confidence 999887554333221 1222222 88999999975 566666 65544 55444 99999
Q ss_pred HHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec----ccCCC-ccceeeEEeC-HHHHhhccCCC-------
Q 012363 274 DACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA----KPLAG-GLPIGAALVT-EKVASAINYGD------- 340 (465)
Q Consensus 274 ~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s----K~lg~-G~~iG~v~~~-~~i~~~~~~~~------- 340 (465)
++|++||+++|+||+|+.+.. +.....+..+|++++| |++++ |. .|+++++ +++++.+....
T Consensus 146 ~~~~~~~~~li~D~~~~~g~~----~~~~~~~~~~d~~~~s~~~~K~l~~~g~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 220 (374)
T 3uwc_A 146 KIAKKHNLHIVEDACQTILGR----INDKFVGSWGQFACFSLHPLKNLNVWSD-AGVIITHSDEYAEKLRLYRNHGLINR 220 (374)
T ss_dssp HHHHHTTCEEEEECTTCTTCE----ETTEETTSSSSEEEEECSSSSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEET
T ss_pred HHHHHcCCEEEEeCCCccCce----eCCeeccccccEEEEeCCCCCcCCccce-eEEEEeCCHHHHHHHHHHHhcCcccc
Confidence 999999999999999984321 2223344456888777 99987 65 7888875 45655443211
Q ss_pred -----CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCC-ceee--e--ccce--EEEEEecC
Q 012363 341 -----HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPH-VKDV--R--GLGL--IIGIEFDV 408 (465)
Q Consensus 341 -----~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~--~--~~g~--~~~i~~~~ 408 (465)
.+.++..+++.++++...++.+ +++.++.+++.+++++.|.++ +. +... . +... .+.+.. .
T Consensus 221 ~~~~~~~~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~ 293 (374)
T 3uwc_A 221 DVCVEYGINCRMDTIQAVIANRLMNQL--ETITEKRRGIAHLYDQSFVDL----SEFIDVPVRREGVYHVFHIYVLRV-K 293 (374)
T ss_dssp TEESSCCCBCBCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHTGGG----TTTEECCCCCTTEECCCSSEEEEE-T
T ss_pred CccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccC----CCeEEeccCCCCCceeeEEEEEEc-C
Confidence 1223344566655554444322 345566666666666665543 21 1111 0 1122 122332 3
Q ss_pred ChHHHHHHHHHCCceEeecCC--------------------------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012363 409 SATPVVDACRDSGLLVLTAGK--------------------------GNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 409 ~~~~~~~~l~~~Gv~v~~~~~--------------------------~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
+..++.+.|.++||.+.++.. .+.+|++++..+|++||++++++|++++++.
T Consensus 294 ~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~~ 371 (374)
T 3uwc_A 294 YRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLEK 371 (374)
T ss_dssp THHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 677899999999999876530 1579999999999999999999999998753
No 169
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.92 E-value=6.6e-24 Score=218.15 Aligned_cols=326 Identities=9% Similarity=0.025 Sum_probs=201.4
Q ss_pred CCHHHHHHHHHHHhhcc------cccCCCCCHHHHHHHHHHHhhcC-----CCeEEecCCHHHHHHHHHHHHHHHhhhcC
Q 012363 115 GDADWIKAVVDQANVLT------HVSNMYYSIPQIELAKRLVACSF-----ADRVFFSNTGTEANEAAIKFARKFQRHSN 183 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~------~~~~~~~~~~~~~la~~l~~~~~-----~~~v~~~~sG~eA~~~al~~a~~~t~~~~ 183 (465)
.+..+.+++.+++.... +....+..+.++++++++.+..+ .++|++|+|+++|+..+++++..-.
T Consensus 102 ~P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~g---- 177 (498)
T 3ihj_A 102 FPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGG---- 177 (498)
T ss_dssp SCHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCC----
T ss_pred CCHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCC----
Confidence 35667777777776532 11112223457778888876653 6899999999999999998665200
Q ss_pred CCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCC-----CCeEEEEEcccCCC
Q 012363 184 PDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP-----GKTAAVFVEPIQGE 258 (465)
Q Consensus 184 ~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-----~~~a~vi~ep~~~~ 258 (465)
..+++.|++..|+|+.+...+...+...... +......+ .-|+++|++++++ +..++++++|.|++
T Consensus 178 ---d~~~d~Vlv~~p~y~~~~~~~~~~g~~~v~~----~~~~~~~~--~~d~~~le~~l~~~~~~~~~k~i~l~np~NPT 248 (498)
T 3ihj_A 178 ---GKSRTGVMIPIPQYPLYSAVISELDAIQVNY----YLDEENCW--ALNVNELRRAVQEAKDHCDPKVLCIINPGNPT 248 (498)
T ss_dssp ---GGGSEEEEEEESCCTHHHHHHHHTTCEEEEE----ECBGGGTT--BCCHHHHHHHHHHHTTTSEEEEEEEESSCTTT
T ss_pred ---CCCCCEEEEeCCCchhHHHHHHHcCCEEEEe----eccccccC--CCCHHHHHHHHHhhhccCCCeEEEEECCCCCC
Confidence 0013589999999988775544333221100 10000000 0189999999863 23345555665555
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc--ccccccc----------CC-cccEEEecccC-C-Cccce
Q 012363 259 GGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY--LWAHEHY----------GI-FPDIMTLAKPL-A-GGLPI 323 (465)
Q Consensus 259 ~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~--~~~~~~~----------~~-~pdi~t~sK~l-g-~G~~i 323 (465)
| .+++.+.+++|.++|++||++||+||+|..+.+.+. ...+... ++ ..-+.+|||.+ | .|+|+
T Consensus 249 G--~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~ 326 (498)
T 3ihj_A 249 G--QVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRG 326 (498)
T ss_dssp C--CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCC
T ss_pred C--CcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccce
Confidence 4 345889999999999999999999999988744331 1111110 11 11234789999 4 59999
Q ss_pred eeEE---eCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHH-----------hc-CchHHHHHHHHHHHHHHHHHHHHHc
Q 012363 324 GAAL---VTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK-----------IS-NPAFLASVSKKGHYFKETLKQKLAR 388 (465)
Q Consensus 324 G~v~---~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~-----------~~-~~~~~~~~~~~~~~l~~~l~~~~~~ 388 (465)
||++ +++++++.+... .....+.+.+++.++.++++. +. .+...++++++.+. +.+.+.+
T Consensus 327 G~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~----l~~~L~~ 401 (498)
T 3ihj_A 327 GYMEVINLHPEIKGQLVKL-LSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKL----TEDLFNQ 401 (498)
T ss_dssp EEEEEESCCHHHHHHHHHH-HHHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHH----HHHHHHT
T ss_pred EEEEEecCCHHHHHHHHHH-HhccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHH----HHHHHhc
Confidence 9998 688888877542 224456788888877766641 00 01222333344444 4444445
Q ss_pred CCCceeeeccc-eEEEEEecC-------------ChHHH-HH-HHHHCCceEeecCC------CCEEEEecCCCCcHHHH
Q 012363 389 NPHVKDVRGLG-LIIGIEFDV-------------SATPV-VD-ACRDSGLLVLTAGK------GNVVRLVPPLIISEQEL 446 (465)
Q Consensus 389 ~~~~~~~~~~g-~~~~i~~~~-------------~~~~~-~~-~l~~~Gv~v~~~~~------~~~lRi~~~~~~t~e~i 446 (465)
+|.+....+.| .++++.++. ...++ +. .|.++||.+.|+.. ...+|+++ ..+++++
T Consensus 402 ~~g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~--~~~~e~l 479 (498)
T 3ihj_A 402 VPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTI--LPPVEKL 479 (498)
T ss_dssp STTEECCCCCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEEC--CSCHHHH
T ss_pred CCCcEecCCCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEe--CCCHHHH
Confidence 55555444444 445545531 22333 44 45578999988521 24789977 4799999
Q ss_pred HHHHHHHHHHHHHhhh
Q 012363 447 DQAVEILCKTLPVLDS 462 (465)
Q Consensus 447 ~~~l~~l~~~l~~~~~ 462 (465)
++++++|.++++++.+
T Consensus 480 ~~~i~~L~~~~~~~~~ 495 (498)
T 3ihj_A 480 KTVLQKVKDFHINFLE 495 (498)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988764
No 170
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.92 E-value=9.9e-24 Score=210.33 Aligned_cols=309 Identities=13% Similarity=0.092 Sum_probs=204.7
Q ss_pred cCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 012363 111 ALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190 (465)
Q Consensus 111 ~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~ 190 (465)
.+.+.+++...++... ....+.+..++++...+++++|+++++.+.+++++||++|+..+++.+. .++
T Consensus 31 ~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~~~~-----------~~g 98 (389)
T 3acz_A 31 TFCFDSTQQGADLFMG-KGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGMGAISSSTLAFL-----------QKG 98 (389)
T ss_dssp BBCCSSHHHHHHHHTT-CSSCCCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHTTTC-----------CTT
T ss_pred ceecCChHHHHHhhcC-CCCCcccCCCCChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHh-----------CCC
Confidence 3556665444333222 1223444566788899999999999997788889999999999988653 158
Q ss_pred ceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 012363 191 TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQ 270 (465)
Q Consensus 191 ~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~ 270 (465)
++|++.+++||+......... ......+.+++..|++++++++++ ++++|++++.++++|.+.+ ++
T Consensus 99 d~vl~~~~~y~~~~~~~~~~~---------~~~g~~~~~v~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~----l~ 164 (389)
T 3acz_A 99 DHLIAGDTLYGCTVSLFTHWL---------PRFGIEVDLIDTSDVEKVKAAWKP-NTKMVYLESPANPTCKVSD----IK 164 (389)
T ss_dssp CEEEEESSCCHHHHHHHHHHH---------HHTTCEEEEECTTCHHHHHHTCCT-TEEEEEEESSCTTTCCCCC----HH
T ss_pred CEEEEeCCCchHHHHHHHHHH---------HHcCCEEEEECCCCHHHHHHhcCC-CCeEEEEECCCCCCCeecC----HH
Confidence 899999999998654321100 011133456677799999999975 5788888888887887765 99
Q ss_pred HHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE--EecccCCC-ccce-eeEEeCH-HHHhhccCCCCcCCC
Q 012363 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPI-GAALVTE-KVASAINYGDHGSTF 345 (465)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~-G~~i-G~v~~~~-~i~~~~~~~~~~~t~ 345 (465)
+|.++|++||+++|+||+|+++. .+... +..+|++ +++|++++ |.|+ |++++++ ++++.+.........
T Consensus 165 ~i~~~~~~~~~~livD~~~~~~~-~~~~~-----~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~ 238 (389)
T 3acz_A 165 GIAVVCHERGARLVVDATFTSPC-FLKPL-----ELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGS 238 (389)
T ss_dssp HHHHHHHHHTCEEEEECTTTCTT-TCCGG-----GTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCEEEEECCCcccc-ccCcc-----ccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCC
Confidence 99999999999999999998652 22221 2346777 68899986 6888 9999998 888877543221223
Q ss_pred CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH----------HcCCCce----eeeccceEEEEEecCChH
Q 012363 346 AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKL----------ARNPHVK----DVRGLGLIIGIEFDVSAT 411 (465)
Q Consensus 346 ~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~----------~~~~~~~----~~~~~g~~~~i~~~~~~~ 411 (465)
+.+++.+.++...|+.+ +...++..++...+.+.|++.. ..+|... ..++.|.++.+.+.. ..
T Consensus 239 ~~~~~~~~~~~~~l~~l--~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~-~~ 315 (389)
T 3acz_A 239 LMAPMDAFLCARGMKTL--PIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS-FE 315 (389)
T ss_dssp CCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS-HH
T ss_pred CCCHHHHHHHHcCccHH--HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC-HH
Confidence 45778887777777633 2234445555555555555420 1111110 113568888998853 55
Q ss_pred HHHHHHHHCCceEeec--C--------------------------C-CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012363 412 PVVDACRDSGLLVLTA--G--------------------------K-GNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 412 ~~~~~l~~~Gv~v~~~--~--------------------------~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
...+.|.+.|+++... | . .+.+|++++...+++ +++.|.++++
T Consensus 316 ~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~~~~~----li~~l~~al~ 387 (389)
T 3acz_A 316 AAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDD----IIADLKQALE 387 (389)
T ss_dssp HHHHHHTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSSCHHH----HHHHHHHHHT
T ss_pred HHHHHHHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccCCHHH----HHHHHHHHHh
Confidence 5666666788877552 1 0 368999988764444 4555555543
No 171
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.92 E-value=8.1e-24 Score=210.93 Aligned_cols=303 Identities=13% Similarity=0.078 Sum_probs=205.8
Q ss_pred CHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEE
Q 012363 116 DADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195 (465)
Q Consensus 116 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~ 195 (465)
+|++++++.+++++..+ .+.+...++++.++++++.+++++++||++|+..+++.+. . .++++|++
T Consensus 19 ~~~~~~a~~~~~~~~~~----~~~~~~~~l~~~la~~~~~~~~~~~~~gt~al~~~~~~~~--~--------~~gd~Vl~ 84 (393)
T 1mdo_A 19 GAEELAAVKTVLDSGWI----TTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALG--I--------GEGDEVIT 84 (393)
T ss_dssp CHHHHHHHHHHHHHTCC----SSSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTT--C--------CTTCEEEE
T ss_pred CHHHHHHHHHHHhcCCc----CCChHHHHHHHHHHHHhCCCcEEEecChHHHHHHHHHHcC--C--------CCCCEEEe
Confidence 48889999998876422 2456688999999999998899999999999999999762 1 15889999
Q ss_pred EcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHH
Q 012363 196 FTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDA 275 (465)
Q Consensus 196 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l 275 (465)
.+++|++....+...+..... .+..++.. ..|+++|++++++ ++++|++++. .|...+ +++|.++
T Consensus 85 ~~~~~~~~~~~~~~~g~~~~~----v~~~~~~~---~~d~~~l~~~l~~-~~~~v~~~~~---~G~~~~----~~~i~~l 149 (393)
T 1mdo_A 85 PSMTWVSTLNMIVLLGANPVM----VDVDRDTL---MVTPEHIEAAITP-QTKAIIPVHY---AGAPAD----LDAIYAL 149 (393)
T ss_dssp ESSSCHHHHHHHHHTTCEEEE----ECBCTTTC---CBCHHHHHHHCCT-TEEEECCBCG---GGCCCC----HHHHHHH
T ss_pred CCCccHhHHHHHHHCCCEEEE----EeccCCcC---CCCHHHHHHhcCC-CceEEEEeCC---CCCcCC----HHHHHHH
Confidence 999999876444332221111 11111100 1289999999975 5777777652 344443 8999999
Q ss_pred HHHhCCEEEEeccccC-CCCCCccccccccCCcccEEEec----ccCCCccceeeEEeC-HHHHhhccCCCC-c------
Q 012363 276 CDDAGALLVFDEVQCG-LGRTGYLWAHEHYGIFPDIMTLA----KPLAGGLPIGAALVT-EKVASAINYGDH-G------ 342 (465)
Q Consensus 276 ~~~~g~llI~DEv~~g-~gr~g~~~~~~~~~~~pdi~t~s----K~lg~G~~iG~v~~~-~~i~~~~~~~~~-~------ 342 (465)
|++||+++|+||+|+. +...+.. .+. +|++++| |++++| ++|+++++ +++++.+.+... +
T Consensus 150 ~~~~~~~li~D~a~~~g~~~~~~~-----~~~-~d~~~~S~~k~K~l~~~-~~g~~~~~~~~~~~~l~~~~~~~~~~~~~ 222 (393)
T 1mdo_A 150 GERYGIPVIEDAAHATGTSYKGRH-----IGA-RGTAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKFHGLGVDAW 222 (393)
T ss_dssp HHHHTCCBCEECTTCTTCEETTEE-----TTS-SSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTEECC--
T ss_pred HHHcCCeEEEECccccCCeECCee-----cCC-CCeEEEeCCCCCccccc-cceEEEeCCHHHHHHHHHHHhcCCcccch
Confidence 9999999999999983 3233321 222 6877665 888765 78999986 777766532111 0
Q ss_pred -----------------CCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCce------eeeccc
Q 012363 343 -----------------STFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVK------DVRGLG 399 (465)
Q Consensus 343 -----------------~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~------~~~~~g 399 (465)
..+..+++.++++.+.++.+ ++..++.+++.+++++.|.+ .+... ..++.+
T Consensus 223 ~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~ 296 (393)
T 1mdo_A 223 DRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL--DALNARRAAIAAQYHQAMAD----LPFQPLSLPSWEHIHAW 296 (393)
T ss_dssp ---------CCEESSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHT----SSCEECCCCSSCEECCC
T ss_pred hhhcccccccccccccCccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhc----CCcccccCCCCCCCcee
Confidence 01334777777776666543 34455555555555555543 34110 122445
Q ss_pred eEEEEEec-----CChHHHHHHHHHCCceEeecCC------------------------CCEEEEecCCCCcHHHHHHHH
Q 012363 400 LIIGIEFD-----VSATPVVDACRDSGLLVLTAGK------------------------GNVVRLVPPLIISEQELDQAV 450 (465)
Q Consensus 400 ~~~~i~~~-----~~~~~~~~~l~~~Gv~v~~~~~------------------------~~~lRi~~~~~~t~e~i~~~l 450 (465)
.++++.++ .+..++.+.|.++||.+.++.. ...+|++++..+|++|+++++
T Consensus 297 ~~~~v~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~ 376 (393)
T 1mdo_A 297 HLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVI 376 (393)
T ss_dssp SCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHH
T ss_pred EEEEEEecccccccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHH
Confidence 57788774 3677899999999999876421 137999988889999999999
Q ss_pred HHHHHHHHHh
Q 012363 451 EILCKTLPVL 460 (465)
Q Consensus 451 ~~l~~~l~~~ 460 (465)
++|+++++..
T Consensus 377 ~~l~~~~~~~ 386 (393)
T 1mdo_A 377 TALHQIAGQG 386 (393)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHhcC
Confidence 9999887654
No 172
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.92 E-value=1.8e-23 Score=206.83 Aligned_cols=308 Identities=14% Similarity=0.141 Sum_probs=201.6
Q ss_pred CCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceE
Q 012363 114 HGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEF 193 (465)
Q Consensus 114 h~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~i 193 (465)
..+|++++++.+++.... ..+.+...++++.|+++++.+++++++||++|+..+++.++.+. .++++|
T Consensus 10 ~~~~~v~~a~~~~~~~~~----~~~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~~~~~~--------~~gd~V 77 (375)
T 2fnu_A 10 CLDKEDKKAVLEVLNSKQ----LTQGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFS--------ADRNEI 77 (375)
T ss_dssp CCCHHHHHHHHHHHTSSC----CSSSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCC--------TTSCEE
T ss_pred CCCHHHHHHHHHHHHcCc----ccCChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcccC--------CCCCEE
Confidence 367999999999886532 12356678999999999997799999999999999999762101 157899
Q ss_pred EEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHH
Q 012363 194 VSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLR 273 (465)
Q Consensus 194 i~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~ 273 (465)
++.+++||+....+...+....+. +..++. ..|+++|++++++ ++++|++... +|.+.+ +++|.
T Consensus 78 l~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~----~~d~~~l~~~i~~-~~~~v~~~~~---tG~~~~----l~~i~ 141 (375)
T 2fnu_A 78 ITTPISFVATANMLLESGYTPVFA----GIKNDG----NIDELALEKLINE-RTKAIVSVDY---AGKSVE----VESVQ 141 (375)
T ss_dssp EECSSSCTHHHHHHHHTTCEEEEC----CBCTTS----SBCGGGSGGGCCT-TEEEEEEECG---GGCCCC----HHHHH
T ss_pred EECCCccHhHHHHHHHCCCEEEEe----ccCCCC----CCCHHHHHhhcCc-CceEEEEeCC---cCCccC----HHHHH
Confidence 999999998876544433222111 111111 1278999999975 4565444333 565554 89999
Q ss_pred HHHHHhCCEEEEeccccCCCCCCccccccccCC--cccEEEec--ccCCCccceeeEEe-C-HHHHhhccCCC-------
Q 012363 274 DACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI--FPDIMTLA--KPLAGGLPIGAALV-T-EKVASAINYGD------- 340 (465)
Q Consensus 274 ~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~--~pdi~t~s--K~lg~G~~iG~v~~-~-~~i~~~~~~~~------- 340 (465)
++|++||++||+||+|+.+ .... ....+. ..++.++| |.++.| +|++++ + +++++.+.+..
T Consensus 142 ~l~~~~~~~li~D~a~~~~-~~~~---~~~~~~~~~i~~~s~s~~K~~~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (375)
T 2fnu_A 142 KLCKKHSLSFLSDSSHALG-SEYQ---NKKVGGFALASVFSFHAIKPITTA--EGGAVVTNDSELHEKMKLFRSHGMLKK 215 (375)
T ss_dssp HHHHHHTCEEEEECTTCTT-CEET---TEETTSSSSEEEEECCTTSSSCCS--SCEEEEESCHHHHHHHHHHTBTTEEES
T ss_pred HHHHHcCCEEEEECccccC-CeEC---CeeccccCCeEEEeCCCCCCcccc--CceEEEeCCHHHHHHHHHHHhcCCccc
Confidence 9999999999999999743 2211 111222 24455788 999654 677776 3 66766554321
Q ss_pred ---------CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeee------ccceEEEEE
Q 012363 341 ---------HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVR------GLGLIIGIE 405 (465)
Q Consensus 341 ---------~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~------~~g~~~~i~ 405 (465)
.+.++..+++.++++...++.+ ++..++.+++.+++.+.|+ +++.+.... +.+.++++.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~~~~~~~~ 289 (375)
T 2fnu_A 216 DFFEGEVKSIGHNFRLNEIQSALGLSQLKKA--PFLMQKREEAALTYDRIFK----DNPYFTPLHPLLKDKSSNHLYPIL 289 (375)
T ss_dssp SSSCEEESSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHT----TCSSEEESGGGCSSCCCCSCEEEE
T ss_pred cccccccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhh----cCCCccccCCCCCCCcceEEEEEE
Confidence 1122345666666555444322 3445555555555555554 443222221 223455666
Q ss_pred ecC----ChHHHHHHHHHCCceEeecC-----------------C-------CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012363 406 FDV----SATPVVDACRDSGLLVLTAG-----------------K-------GNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 406 ~~~----~~~~~~~~l~~~Gv~v~~~~-----------------~-------~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
++. +..++.+.|.++||.+...- . .+.+|++++..+|++|+++++++|++++
T Consensus 290 ~~~~~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~ 369 (375)
T 2fnu_A 290 MHQKFFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTF 369 (375)
T ss_dssp ECGGGGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred eCccccchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 642 56789999999999987210 0 1579999998899999999999999998
Q ss_pred HHhh
Q 012363 458 PVLD 461 (465)
Q Consensus 458 ~~~~ 461 (465)
++++
T Consensus 370 ~~~~ 373 (375)
T 2fnu_A 370 ESFK 373 (375)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 7653
No 173
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.92 E-value=6.2e-25 Score=216.20 Aligned_cols=312 Identities=13% Similarity=0.076 Sum_probs=193.3
Q ss_pred CCC-CCHHHHHHHHHHHhhcc--cccCCCC-CHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCC
Q 012363 112 LGH-GDADWIKAVVDQANVLT--HVSNMYY-SIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSK 187 (465)
Q Consensus 112 lGh-~~p~v~~a~~~~~~~~~--~~~~~~~-~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~ 187 (465)
||+ +||.+.+++.++++... .....|. ++...+|+++|+++++.+..++++||++|+..+++++..
T Consensus 15 l~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~~i~~~~G~~a~~~al~~~~~---------- 84 (357)
T 3lws_A 15 QISGHGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALRIWSD---------- 84 (357)
T ss_dssp ESSBSSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHH----------
T ss_pred cccCCCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHhh----------
Confidence 444 67778888887776522 1112232 345789999999999977777889999999999987764
Q ss_pred CCCce-EEEEcCCcccCcccc---ccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEccc-CCCCCcc
Q 012363 188 EPATE-FVSFTNSFHGRTMGA---LALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPI-QGEGGIY 262 (465)
Q Consensus 188 ~~~~~-ii~~~~~yhg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~-~~~~G~~ 262 (465)
++++ +|+.++.||...... ....+..... .+. ... ..|+++|+++.+ +++|++++. |+++|.
T Consensus 85 -~gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~---v~~-~~~----~~d~~~l~~~~~---~~~v~~~~p~np~~G~- 151 (357)
T 3lws_A 85 -ETDNRTVAYHPLCHLEIHEQDGLKELHPIETIL---VGA-ADR----LMTLDEIKALPD---IACLLLELPQREIGGV- 151 (357)
T ss_dssp -HHTCCEEEECTTCHHHHSSTTHHHHHSSCEEEE---CSC-TTS----CCCHHHHHTCCS---CSEEEEESSBGGGTSB-
T ss_pred -cCCCcEEEecccceeeeeccchhhhccCcEEEE---ecC-CCC----CcCHHHHhcCcC---cceEEEEcccccCCce-
Confidence 2442 666777776544321 1111111100 011 111 128899998842 555655554 444454
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEecccc-----CCCCCCccccccccCCcccEEEecccCCCccceeeEEeCHHHHhhcc
Q 012363 263 SATKEFLQFLRDACDDAGALLVFDEVQC-----GLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAIN 337 (465)
Q Consensus 263 ~~~~~~l~~l~~l~~~~g~llI~DEv~~-----g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~ 337 (465)
+++.+++++|.++|++||++||+||+|. .+++....+. . ....-+.++||++++... |++++++++++.+.
T Consensus 152 ~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-~--~~d~~~~s~sK~~~~~~g-g~~~~~~~~~~~~~ 227 (357)
T 3lws_A 152 APAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA-G--LFDSIYISFYKGLGGIAG-AILAGPAAFCQTAR 227 (357)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH-T--TSSEEEEESSSTTCCSSC-EEEEECHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH-h--cCCEEEEeccccCCCCce-EEEEcCHHHHHHHH
Confidence 5689999999999999999999999875 1222211111 1 111124489999964322 89999999888775
Q ss_pred CC--CCc-CCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCcee--eeccceEEEEEecCC---
Q 012363 338 YG--DHG-STFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKD--VRGLGLIIGIEFDVS--- 409 (465)
Q Consensus 338 ~~--~~~-~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--~~~~g~~~~i~~~~~--- 409 (465)
.. ..+ ..+..++. ++++.++|+... +..++..++.+++.+.| .+++.+.. .+..+.++++.++..
T Consensus 228 ~~~~~~~~~~~~~~~~-~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L----~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 300 (357)
T 3lws_A 228 IWKRRYGGDLISLYPY-IVSADYYYELRK--DRMGQYYEQAKQLAEQF----NALPGVHTTPEVPVSNMFHLHFDGQAAD 300 (357)
T ss_dssp HHHHHTTCCCSCCHHH-HHHHHHHHHHHT--TCHHHHHHHHHHHHHHH----HTSTTEEEESSSCSSSEEEEEEESCHHH
T ss_pred HHHHHhcCCcccchHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHH----HhCCCCeeccCCCcceEEEEEecCChHH
Confidence 31 122 23333443 445556676532 22333455555555554 34444433 245678888888533
Q ss_pred -hHHHHHHHHHCCceEeecC---C-CCEEEEecC---CCCcHHHHHHHHHHHHHHH
Q 012363 410 -ATPVVDACRDSGLLVLTAG---K-GNVVRLVPP---LIISEQELDQAVEILCKTL 457 (465)
Q Consensus 410 -~~~~~~~l~~~Gv~v~~~~---~-~~~lRi~~~---~~~t~e~i~~~l~~l~~~l 457 (465)
..++.+.|.++||++.++. . ..++|+++. ...+++++++++++|.+++
T Consensus 301 ~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 301 ISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp HHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 4678889999999998763 1 137888765 3468999999999998765
No 174
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.92 E-value=1.2e-23 Score=204.91 Aligned_cols=281 Identities=13% Similarity=0.081 Sum_probs=196.1
Q ss_pred HHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCC
Q 012363 144 ELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV 223 (465)
Q Consensus 144 ~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 223 (465)
++++++++.++.+..++++||++|+..+++.+. .++++|++.+++||+.......... ..
T Consensus 2 ~l~~~la~~~g~~~~i~~~sG~~a~~~~~~~~~-----------~~g~~v~~~~~~~~~~~~~~~~~~~---------~~ 61 (331)
T 1pff_A 2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFL-----------KAGDHLISDDCLYGCTHALFEHQLR---------KF 61 (331)
T ss_dssp HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEEEESCCCHHHHHHHHTHHH---------HT
T ss_pred hHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhc-----------CCCCEEEEcCCCcchHHHHHHHHHH---------hc
Confidence 577888888886677888888999999998663 1578999999999987544321100 01
Q ss_pred CCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH-hCCEEEEeccccCCCCCCcccccc
Q 012363 224 MPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDD-AGALLVFDEVQCGLGRTGYLWAHE 302 (465)
Q Consensus 224 ~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~-~g~llI~DEv~~g~gr~g~~~~~~ 302 (465)
...+.+++..|++++++++++ ++++|++++.++++|.+.+ +++|.++|++ ||+++|+||+|+.+ ..... .
T Consensus 62 g~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~~li~D~a~~~~-~~~~~--~- 132 (331)
T 1pff_A 62 GVEVDFIDMAVPGNIEKHLKP-NTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFASP-ILTNP--L- 132 (331)
T ss_dssp TCEEEEECTTSTTHHHHTCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTHH-HHCCG--G-
T ss_pred CCEEEEeCCCCHHHHHHhhcC-CCeEEEEECCCCCcCcccC----HHHHHHHHhhhcCCEEEEECCCccc-ccCCh--h-
Confidence 123445566789999999974 5788888887777787765 9999999999 99999999999732 11111 1
Q ss_pred ccCCcccEEEecccCCC-ccc-eeeEEeCH-HHHhhccCCCCc-CCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 012363 303 HYGIFPDIMTLAKPLAG-GLP-IGAALVTE-KVASAINYGDHG-STFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYF 378 (465)
Q Consensus 303 ~~~~~pdi~t~sK~lg~-G~~-iG~v~~~~-~i~~~~~~~~~~-~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l 378 (465)
.++....+.+++|++++ |.| +|++++++ ++++.+.+.... .+.+.+++++.++.++++.+ +...++..++.+.+
T Consensus 133 ~~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~ 210 (331)
T 1pff_A 133 DLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTL--DMRVKRAAENAQKV 210 (331)
T ss_dssp GGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred hcCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcchH--HHHHHHHHHHHHHH
Confidence 23444444578999986 688 79999998 998888765555 55678888888877777643 22233444444444
Q ss_pred HHHHHHHH----------HcCCCce----eeeccceEEEEEecCChHHHHHHHHHCCceEeec-----------------
Q 012363 379 KETLKQKL----------ARNPHVK----DVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTA----------------- 427 (465)
Q Consensus 379 ~~~l~~~~----------~~~~~~~----~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~----------------- 427 (465)
.+.+++.. ..+|.+. ..++.|.++.+.+. +...+.+.|.++||++...
T Consensus 211 ~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~ 289 (331)
T 1pff_A 211 AEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD-GLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTH 289 (331)
T ss_dssp HHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS-SHHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTS
T ss_pred HHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC-CHHHHHHHHHhCCCceeccCCCCcceeeecchhhcc
Confidence 44444320 1111111 11346788888875 5667888888999976432
Q ss_pred -----------CC-CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012363 428 -----------GK-GNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 428 -----------~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
+. .+.+|++++...++++++.+++.|+++
T Consensus 290 ~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 290 AGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp TTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred cccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 11 378999999999999999999988754
No 175
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.92 E-value=1e-23 Score=210.70 Aligned_cols=332 Identities=11% Similarity=0.069 Sum_probs=201.0
Q ss_pred EEEecccCcccccCCC--CCHHHHHHHHHHH-hh-cc--cccCCCCCHHHHHHHHHHHhhcC----CC--eEEecCCHHH
Q 012363 99 EYLDLSSGIAVNALGH--GDADWIKAVVDQA-NV-LT--HVSNMYYSIPQIELAKRLVACSF----AD--RVFFSNTGTE 166 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh--~~p~v~~a~~~~~-~~-~~--~~~~~~~~~~~~~la~~l~~~~~----~~--~v~~~~sG~e 166 (465)
..|||..|.+..+-|. .++.|++|.. .+ +. .. +....+..+.++++++++.+..+ .+ .++.|+||++
T Consensus 30 ~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~ 108 (405)
T 3k7y_A 30 EKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTG 108 (405)
T ss_dssp SCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHH
T ss_pred CcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHH
Confidence 3588887754333332 4677888876 43 22 11 21222333446666666654443 24 4699999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCC-CC-CceEeeCCCHHHHHhhcCC
Q 012363 167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV-MP-GVNFVEYGNIEATRKLIQP 244 (465)
Q Consensus 167 A~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~d~~~le~~l~~ 244 (465)
|+.++++++..+. + |.|++.+|+|+++...+...+...... ++ .. +... |+++|++.++.
T Consensus 109 al~~~~~~l~~~~---------~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v----~~~~~~~~~~----d~~~l~~~l~~ 170 (405)
T 3k7y_A 109 AIFVLLEFLKMLN---------V-ETLYVTNPPYINHVNMIESRGFNLKYI----NFFDYNLIDI----NYDLFLNDLRN 170 (405)
T ss_dssp HHHHHHHHHHTTT---------C-CEEEEESSCCHHHHHHHHTTTCEEEEE----CCEETTTTEE----CHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC---------C-CEEEEeCCCCHhHHHHHHHcCCeEEEE----eccccccCCc----CHHHHHHHHHh
Confidence 9999998776321 5 899999999999876655444322211 11 01 1222 78999998862
Q ss_pred -CCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc---cccc----cccCCcccEEEecc
Q 012363 245 -GKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY---LWAH----EHYGIFPDIMTLAK 315 (465)
Q Consensus 245 -~~~a~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~---~~~~----~~~~~~pdi~t~sK 315 (465)
.+.++++++|. ++++| ..++++.+++|.++|++||+++|+||+|.+|...+. .... ...+...-+.+|||
T Consensus 171 ~~~~~~i~l~~~~~NPTG-~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 249 (405)
T 3k7y_A 171 IPNGSSVILQISCYNPCS-VNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSK 249 (405)
T ss_dssp SCSSCEEEECCSSCTTTC-CCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTT
T ss_pred CCCCeEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCc
Confidence 34567777664 33344 457999999999999999999999999999854321 1111 11112233458999
Q ss_pred cCC-CccceeeEEe---CHHHHhhccC----CCCcCCCCChHHHHHHHHHHHHHhc-CchHHHHH---HHHHHHHHHHHH
Q 012363 316 PLA-GGLPIGAALV---TEKVASAINY----GDHGSTFAGSPLVCNAAIAVLDKIS-NPAFLASV---SKKGHYFKETLK 383 (465)
Q Consensus 316 ~lg-~G~~iG~v~~---~~~i~~~~~~----~~~~~t~~~~~~~~~aa~a~L~~~~-~~~~~~~~---~~~~~~l~~~l~ 383 (465)
.++ .|+|+||+++ ++++++.+.. .......+.+.+++.++.++|+.-. .+.+.+++ ++..+..++.|.
T Consensus 250 ~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~ 329 (405)
T 3k7y_A 250 NMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFF 329 (405)
T ss_dssp TSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 6999999854 5666554421 1111223456788888877776310 01122222 222333333444
Q ss_pred HHHH----cCCC---ceeeec-cceEEEEEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHH
Q 012363 384 QKLA----RNPH---VKDVRG-LGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 384 ~~~~----~~~~---~~~~~~-~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~ 455 (465)
+.+. +++. +....+ .|.|+|+.++. ++++.|.++||++.|++ ||+++ ..++++|++++++|++
T Consensus 330 ~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~---~~~~~L~~~gV~v~p~~-----Ris~a-~~~~~~i~~~~~~i~~ 400 (405)
T 3k7y_A 330 NKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA---KIAEHLKTHHIYIINNG-----RINVS-GITKNNVDYIADKICL 400 (405)
T ss_dssp HHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG---GGTTTTTTTTEECCTTS-----EEEGG-GCCTTHHHHHHHHHHH
T ss_pred HHHHhhhhhcCCCCCCccccCCceEEEecCCCH---HHHHHHHHCCEeecCCC-----eEEEe-ccCHHHHHHHHHHHHH
Confidence 4444 4331 233333 45566655432 44566778899999853 88765 3467889999999999
Q ss_pred HHHH
Q 012363 456 TLPV 459 (465)
Q Consensus 456 ~l~~ 459 (465)
+++.
T Consensus 401 ~~~~ 404 (405)
T 3k7y_A 401 SLSQ 404 (405)
T ss_dssp HHHC
T ss_pred HHhh
Confidence 8864
No 176
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.92 E-value=8.4e-24 Score=209.11 Aligned_cols=312 Identities=16% Similarity=0.141 Sum_probs=203.9
Q ss_pred cCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 012363 111 ALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190 (465)
Q Consensus 111 ~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~ 190 (465)
.+++++|.+.+++.+++.+.......++.+...++++.++++++.+++++++||++|++.+++.+. . .++
T Consensus 6 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~sGt~al~~al~~~~--~--------~~g 75 (367)
T 3nyt_A 6 DLKNQQARIKDKIDAGIQRVLRHGQYILGPEVTELEDRLADFVGAKYCISCANGTDALQIVQMALG--V--------GPG 75 (367)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTT--C--------CTT
T ss_pred cccccccccCHHHHHHHHHHHhcCCccCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhC--C--------CCc
Confidence 355655555444444433211111234566788999999999998899999999999999999763 1 158
Q ss_pred ceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 012363 191 TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQ 270 (465)
Q Consensus 191 ~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~ 270 (465)
++|++..++|++....+...+....+. +..++.. ..|+++|++++++ ++++|+ |+++. |...+ ++
T Consensus 76 d~Vi~~~~~~~~~~~~~~~~G~~~~~~----~~~~~~~---~~d~~~l~~~i~~-~~~~v~--~~~~~-G~~~~----~~ 140 (367)
T 3nyt_A 76 DEVITPGFTYVATAETVALLGAKPVYV----DIDPRTY---NLDPQLLEAAITP-RTKAII--PVSLY-GQCAD----FD 140 (367)
T ss_dssp CEEEEESSSCTHHHHHHHHTTCEEEEE----CBCTTTC---SBCGGGTGGGCCT-TEEEEC--CBCGG-GCCCC----HH
T ss_pred CEEEECCCccHHHHHHHHHcCCEEEEE----ecCCccC---CcCHHHHHHhcCc-CCcEEE--eeCCc-cChhh----HH
Confidence 899999999988776554443322211 1111100 0178999999965 677777 44433 44443 99
Q ss_pred HHHHHHHHhCCEEEEecccc-CCCCCCccccccccCCcccEEEec----ccCCC-ccceeeEEe-CHHHHhhccCCC---
Q 012363 271 FLRDACDDAGALLVFDEVQC-GLGRTGYLWAHEHYGIFPDIMTLA----KPLAG-GLPIGAALV-TEKVASAINYGD--- 340 (465)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~-g~gr~g~~~~~~~~~~~pdi~t~s----K~lg~-G~~iG~v~~-~~~i~~~~~~~~--- 340 (465)
+|.++|++||++||+||+|+ |....|. ..+...|++++| |.+++ |. .|+++. ++++++.+....
T Consensus 141 ~i~~la~~~~~~li~D~a~~~g~~~~~~-----~~~~~~di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l~~~~~~~~~~g 214 (367)
T 3nyt_A 141 AINAIASKYGIPVIEDAAQSFGASYKGK-----RSCNLSTVACTSFFPSAPLGCYGD-GGAIFTNDDELATAIRQIARHG 214 (367)
T ss_dssp HHHHHHHHTTCCBEEECTTTTTCEETTE-----ETTSSSSEEEEECCTTSSSCCSSC-CEEEEESCHHHHHHHHHHTBTT
T ss_pred HHHHHHHHcCCEEEEECccccCCeECCe-----eccCCCCEEEEECCCCCcCCCcCc-eeEEEeCCHHHHHHHHHHHhcC
Confidence 99999999999999999997 2222222 122223888776 99988 76 788887 467766554311
Q ss_pred ---------CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCce-eeeccceEEEEEecCCh
Q 012363 341 ---------HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVK-DVRGLGLIIGIEFDVSA 410 (465)
Q Consensus 341 ---------~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~g~~~~i~~~~~~ 410 (465)
.+.++..+++.++++.+.++.+ ++..++.+++.+++++.|.++....+... .......++.+.++ +.
T Consensus 215 ~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 291 (367)
T 3nyt_A 215 QDRRYHHIRVGVNSRLDTLQAAILLPKLEIF--EEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMD-NR 291 (367)
T ss_dssp EEETTEECSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECS-SH
T ss_pred CCcCceeeccCcCCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeC-CH
Confidence 1346778899998888888754 45566777777777777766411111110 01111222334433 56
Q ss_pred HHHHHHHHHCCceEeecCC-----------------------CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012363 411 TPVVDACRDSGLLVLTAGK-----------------------GNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 411 ~~~~~~l~~~Gv~v~~~~~-----------------------~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
.++.+.|.++||.+.+... ...+|+.+....|++|++.+++.|++.
T Consensus 292 ~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 292 ESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp HHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 7899999999998764321 135899888889999999999998754
No 177
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.92 E-value=1.4e-22 Score=204.37 Aligned_cols=312 Identities=16% Similarity=0.134 Sum_probs=202.3
Q ss_pred ecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCC--CHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHh
Q 012363 102 DLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYY--SIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQ 179 (465)
Q Consensus 102 D~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~--~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t 179 (465)
||..+.+ .++ .+|++.+++.++++... |+ .....++++.++++++.+++++++||++|+..+++.+.
T Consensus 20 ~l~~~~p--~~~-~p~~~~~a~~~~~~~~~-----y~~~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~l~~l~--- 88 (424)
T 2po3_A 20 PLLVGRP--NRI-DRARLYERLDRALDSQW-----LSNGGPLVREFEERVAGLAGVRHAVATCNATAGLQLLAHAAG--- 88 (424)
T ss_dssp CEETTCC--CCC-CHHHHHHHHHHHHHHTC-----CSSSCHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHHT---
T ss_pred cccccCC--CCC-ChHHHHHHHHHHHhcCC-----cccCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC---
Confidence 4444443 345 36789999998886531 22 36688999999999998899999999999999999764
Q ss_pred hhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCC-CceEeeCCCHHHHHhhcCCCCeEEEEEcccCCC
Q 012363 180 RHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP-GVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGE 258 (465)
Q Consensus 180 ~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~ 258 (465)
++++|++.+++|++....+...+...... +..+ +.. -|+++|++++++ ++++|++.+ .
T Consensus 89 ---------~gd~Vlv~~~~~~~~~~~~~~~G~~~~~v----~~~~~~~~----~d~~~l~~~i~~-~~~~v~~~~---~ 147 (424)
T 2po3_A 89 ---------LTGEVIMPSMTFAATPHALRWIGLTPVFA----DIDPDTGN----LDPDQVAAAVTP-RTSAVVGVH---L 147 (424)
T ss_dssp ---------CCSEEEEESSSCTHHHHHHHHTTCEEEEE----CBCTTTSS----BCHHHHGGGCCT-TEEEEEEEC---G
T ss_pred ---------CCCEEEECCCccHHHHHHHHHcCCEEEEE----ecCCCcCC----cCHHHHHHhhCc-CCcEEEEEC---C
Confidence 36899999999998875443332221111 1111 111 189999999975 567777643 3
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CCCCCCccccccccCCcccEEE--ec--ccCCCccceeeEEeC-HHH
Q 012363 259 GGIYSATKEFLQFLRDACDDAGALLVFDEVQC-GLGRTGYLWAHEHYGIFPDIMT--LA--KPLAGGLPIGAALVT-EKV 332 (465)
Q Consensus 259 ~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~gr~g~~~~~~~~~~~pdi~t--~s--K~lg~G~~iG~v~~~-~~i 332 (465)
+|...+ +++|.++|++||++||+||+|+ |+.+.|.. .+..+|+++ || |++++ +++|+++++ +++
T Consensus 148 tG~~~~----l~~i~~la~~~~~~li~Dea~~~g~~~~~~~-----~~~~~di~~~S~sk~K~l~~-~~~G~~v~~~~~l 217 (424)
T 2po3_A 148 WGRPCA----ADQLRKVADEHGLRLYFDAAHALGCAVDGRP-----AGSLGDAEVFSFHATKAVNA-FEGGAVVTDDADL 217 (424)
T ss_dssp GGCCCC----HHHHHHHHHHTTCEEEEECTTCTTCEETTEE-----TTSSSSEEEEECCTTSSSCC-SSCEEEEESCHHH
T ss_pred CCCcCC----HHHHHHHHHHcCCEEEEECccccCCeECCee-----cccccCEEEEeCCCCCCccC-CCCeEEEeCCHHH
Confidence 444433 9999999999999999999998 66544432 122246654 55 77766 799999998 788
Q ss_pred HhhccCC----C--------CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeee-ccc
Q 012363 333 ASAINYG----D--------HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVR-GLG 399 (465)
Q Consensus 333 ~~~~~~~----~--------~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~g 399 (465)
++.+... . .+.++..+++.+++++..++.+ +.+.++.+ .+.+.+.+.+.+.+.+.... ..|
T Consensus 218 ~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~--~~~~~~~~----~~~~~l~~~L~~~~g~~~~~~~~~ 291 (424)
T 2po3_A 218 AARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAF--PEVIDRNR----RNHAAYREHLADLPGVLVADHDRH 291 (424)
T ss_dssp HHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHH--HHHHHHHH----HHHHHHHHHTCSCTTEEECCGGGG
T ss_pred HHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHH----HHHHHHHHHhccCCCccccCCCCC
Confidence 7765421 1 0112233566666655544432 22333333 44444444444444333222 122
Q ss_pred -----eEEEEEec-----CChHHHHHHHHHCCceEeecCC-C-----------------------CEEEEecCCCCcHHH
Q 012363 400 -----LIIGIEFD-----VSATPVVDACRDSGLLVLTAGK-G-----------------------NVVRLVPPLIISEQE 445 (465)
Q Consensus 400 -----~~~~i~~~-----~~~~~~~~~l~~~Gv~v~~~~~-~-----------------------~~lRi~~~~~~t~e~ 445 (465)
.++.+.++ .+..++.+.|.++||.+.+... . ..+|+.+...++++|
T Consensus 292 ~~~~~~~~~i~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~ 371 (424)
T 2po3_A 292 GLNNHQYVIVEIDEATTGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDD 371 (424)
T ss_dssp SCCCCCCEEEEECHHHHSSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHH
T ss_pred CccccEEEEEEECCccchhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHH
Confidence 34446553 2567899999999999876211 0 126776668999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 012363 446 LDQAVEILCKTLPVLD 461 (465)
Q Consensus 446 i~~~l~~l~~~l~~~~ 461 (465)
+++++++|++++++..
T Consensus 372 i~~~~~~L~~~~~~~~ 387 (424)
T 2po3_A 372 IRRVADLLRLCATRGR 387 (424)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhH
Confidence 9999999999887653
No 178
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.92 E-value=1.7e-24 Score=213.23 Aligned_cols=313 Identities=14% Similarity=0.063 Sum_probs=194.6
Q ss_pred cccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCC
Q 012363 109 VNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKE 188 (465)
Q Consensus 109 ~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~ 188 (465)
.+++| .||+|++|+.+.+.. ..+++.+...+++++++++++.+..++++||++|+..+++++...
T Consensus 22 ~~~~g-~~p~v~~ai~~~~~~----~~~~~~~~~~~l~~~la~~~~~~~~i~~~~g~~a~~~a~~~~~~~---------- 86 (359)
T 3pj0_A 22 PRNVG-VLTEALQNIDDNLES----DIYGNGAVIEDFETKIAKILGKQSAVFFPSGTMAQQIALRIWADR---------- 86 (359)
T ss_dssp CCBHH-HHHHHTTTSCTTCBC----CBTTBSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHHH----------
T ss_pred ccccC-CCHHHHHHHHhhccc----CcccCCHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHhc----------
Confidence 33444 467777777663322 123456678899999999999777778899999999999987642
Q ss_pred CCceEEEEcCCcccCcccc--c-cccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCC
Q 012363 189 PATEFVSFTNSFHGRTMGA--L-ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSAT 265 (465)
Q Consensus 189 ~~~~ii~~~~~yhg~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~ 265 (465)
+++.+|+.++.+|.+.... . ...+..... .+. ... .-|+++|+++ . .++++|++++.++++|..+++
T Consensus 87 g~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~---v~~-~~~----~~d~~~l~~~-~-~~~~~v~~~~p~n~~~G~~~~ 156 (359)
T 3pj0_A 87 KENRRVAYHPLSHLEIHEQDGLKELQQITPLL---LGT-ANQ----LLTIDDIKSL-R-EPVSSVLIELPQREIGGQLPA 156 (359)
T ss_dssp HTCCEEEECTTCHHHHSSTTHHHHHHCCEEEE---CSC-TTS----CCCHHHHHTC-S-SCCSEEEEESSBGGGTSBCCC
T ss_pred CCCcEEEEeccceeeehhcchHHHhcCceEEe---cCC-cCC----CcCHHHHHhc-c-CCceEEEEEecccCCCcccCC
Confidence 1333677776666543321 1 111211111 111 111 1289999988 4 456777777654444334578
Q ss_pred HHHHHHHHHHHHHhCCEEEEeccccCCC--CCCccccccccCCcccEE--EecccCCCccceeeEEeCHHHHhhccCC--
Q 012363 266 KEFLQFLRDACDDAGALLVFDEVQCGLG--RTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAALVTEKVASAINYG-- 339 (465)
Q Consensus 266 ~~~l~~l~~l~~~~g~llI~DEv~~g~g--r~g~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~-- 339 (465)
.+++++|.++|++||++||+||+|..+. ..+.. ...+....|++ ++||+++++.. |++++++++++.+...
T Consensus 157 ~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~sK~~~~~~g-g~~~~~~~l~~~~~~~~~ 233 (359)
T 3pj0_A 157 FEELEKISEYCHEQGISLHLDGARLWEITPFYQKS--AEEICALFDSVYVSFYKGIGGIAG-AILAGNDDFVQEAKIWKR 233 (359)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCC--HHHHHTTCSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCC--HHHhhccCCEEEEeccccCCCcce-EEEECCHHHHHHHHHHHH
Confidence 8999999999999999999999875321 11111 11111123555 78999987533 7888999998887531
Q ss_pred -CCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCcee--eeccceEEEEEecCC----hHH
Q 012363 340 -DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKD--VRGLGLIIGIEFDVS----ATP 412 (465)
Q Consensus 340 -~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--~~~~g~~~~i~~~~~----~~~ 412 (465)
....++..++.+ +++.++++... +..++..++.+++.+.|+ +++.+.. .+..+.++++.++.. ...
T Consensus 234 ~~~~~~~~~~~~~-~a~~~~l~~~~--~~~~~~~~~~~~l~~~L~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (359)
T 3pj0_A 234 RYGGDLISLYPYI-LSADYYFEKRI--GKMAEYFEAAKGLAERFN----SCSGVKTVPEVPVSNMFHVYFENSADEIGAI 306 (359)
T ss_dssp HTTCCCSCCHHHH-HHHHHHHHHHG--GGHHHHHHHHHHHHHHHH----TSTTEEEESSSCSSSEEEEEESSCHHHHHHH
T ss_pred HhCCCcchhHHHH-HHHHHHHHHHH--HHhHHHHHHHHHHHHHHh----hCCCceeeccCCcceEEEEEecCccchhHHH
Confidence 122333444444 44445666432 334455566666655554 4443333 235567777777432 467
Q ss_pred HHHHHHHCCceEeecCC-----CCEEEEecCC---CCcHHHHHHHHHHHHHH
Q 012363 413 VVDACRDSGLLVLTAGK-----GNVVRLVPPL---IISEQELDQAVEILCKT 456 (465)
Q Consensus 413 ~~~~l~~~Gv~v~~~~~-----~~~lRi~~~~---~~t~e~i~~~l~~l~~~ 456 (465)
+.+.|.++||++.++.. ..++|+++.. ..+.+++++++++|.++
T Consensus 307 l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 307 LTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp HHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 88899999999987631 2467886643 36889999999998765
No 179
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.92 E-value=6e-24 Score=211.02 Aligned_cols=311 Identities=13% Similarity=0.087 Sum_probs=198.4
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCC--HHHHHHHHHHHhhcC------CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCC
Q 012363 115 GDADWIKAVVDQANVLTHVSNMYYS--IPQIELAKRLVACSF------ADRVFFSNTGTEANEAAIKFARKFQRHSNPDS 186 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~--~~~~~la~~l~~~~~------~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~ 186 (465)
.+|+|++++.+.+.. + +.+. ....++.+++++.++ .++|++++||++|+..+++.+.....
T Consensus 16 ~~~~v~~a~~~~~~~--~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~------ 84 (385)
T 2bkw_A 16 LSGAVQKALDVPSLG--H---TSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKA------ 84 (385)
T ss_dssp CCHHHHHTTSCCCCC--T---TSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTC------
T ss_pred chHHHHHHHhccccc--c---CCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCC------
Confidence 456777776554321 1 1111 124566677777665 37899999999999999987641001
Q ss_pred CCCCceEEEE-cCCcccCccccccccCCCCcCCCCCCC-CCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccC
Q 012363 187 KEPATEFVSF-TNSFHGRTMGALALTSKEHYRSPFEPV-MPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSA 264 (465)
Q Consensus 187 ~~~~~~ii~~-~~~yhg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~ 264 (465)
++++|+++ .+.||..........+..... .+. ..+.. .|+++|+++++++++++|++++.++++|.+.+
T Consensus 85 --~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~~~~----~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 155 (385)
T 2bkw_A 85 --PNKNVLVVSTGTFSDRFADCLRSYGAQVDV---VRPLKIGES----VPLELITEKLSQNSYGAVTVTHVDTSTAVLSD 155 (385)
T ss_dssp --SCCEEEEECSSHHHHHHHHHHHHTTCEEEE---ECCSSTTSC----CCHHHHHHHHHHSCCSEEEEESEETTTTEECC
T ss_pred --CCCeEEEEcCCcchHHHHHHHHHcCCceEE---EecCCCCCC----CCHHHHHHHHhcCCCCEEEEEccCCCcCeEcC
Confidence 57888888 556766532222211111100 111 11110 28999999986435677777777777787765
Q ss_pred CHHHHHHHHHHHHHh--CCEEEEeccccCCCCCCccccccccCCcccEEE--ecccCCCccceeeEEeCHHHHh-hccC-
Q 012363 265 TKEFLQFLRDACDDA--GALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTEKVAS-AINY- 338 (465)
Q Consensus 265 ~~~~l~~l~~l~~~~--g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~~i~~-~~~~- 338 (465)
+++|.++|++| |+++|+||+|+ +|.. .+....+ .+|+++ ++|+++++.++|++++++++++ .+.+
T Consensus 156 ----l~~i~~~~~~~~~~~~li~D~a~~-~~~~--~~~~~~~--~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~ 226 (385)
T 2bkw_A 156 ----LKAISQAIKQTSPETFFVVDAVCS-IGCE--EFEFDEW--GVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDS 226 (385)
T ss_dssp ----HHHHHHHHHHHCTTSEEEEECTTT-TTTS--CCCTTTT--TCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHH
T ss_pred ----HHHHHHHHHhhCCCCEEEEECccc-cCCc--ccccccc--CceEEEecCccccccCCcceEEEEcHHHHHHHHhhc
Confidence 88999999999 99999999997 3322 1122222 356664 5799886556699999988776 4420
Q ss_pred ---------------------CCC--cC-CCCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHH-HHHHHcCC
Q 012363 339 ---------------------GDH--GS-TFAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETL-KQKLARNP 390 (465)
Q Consensus 339 ---------------------~~~--~~-t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l-~~~~~~~~ 390 (465)
... .. .++.++.+++++.++|+.+.+ ++..++++++.+++.+.| ++ .+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g 302 (385)
T 2bkw_A 227 KNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNG----LQ 302 (385)
T ss_dssp HHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTT----TC
T ss_pred cCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHh----cC
Confidence 000 11 135677888888888886543 234555666666666655 43 22
Q ss_pred Cceeee------ccceEEEEEecCChHHHHHHHHHCCceEeecCC----CCEEEEe-cC---CCCcHHHHHHHHHHHHHH
Q 012363 391 HVKDVR------GLGLIIGIEFDVSATPVVDACRDSGLLVLTAGK----GNVVRLV-PP---LIISEQELDQAVEILCKT 456 (465)
Q Consensus 391 ~~~~~~------~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~----~~~lRi~-~~---~~~t~e~i~~~l~~l~~~ 456 (465)
. .... ..+.++++.++. ..++.+.|.++||.+.++.. .+++|++ ++ +.+|++|+++++++|+++
T Consensus 303 ~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~ 380 (385)
T 2bkw_A 303 L-TSVSRYPSNMSAHGLTAVYVAD-PPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLA 380 (385)
T ss_dssp C-EESSCSSSTTBCSSCEEEECSC-HHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHH
T ss_pred c-eecccCcccccCCceEEEecCC-HHHHHHHHHHCCeEEeCCCCcccCCCEEEEEccccccccCCHHHHHHHHHHHHHH
Confidence 2 1111 247788888743 77899999999999987532 3689998 54 357999999999999988
Q ss_pred HHHh
Q 012363 457 LPVL 460 (465)
Q Consensus 457 l~~~ 460 (465)
++++
T Consensus 381 ~~~~ 384 (385)
T 2bkw_A 381 LQRK 384 (385)
T ss_dssp TTC-
T ss_pred HHhc
Confidence 7543
No 180
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.92 E-value=1.1e-23 Score=208.79 Aligned_cols=309 Identities=11% Similarity=0.043 Sum_probs=197.2
Q ss_pred cCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 012363 111 ALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190 (465)
Q Consensus 111 ~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~ 190 (465)
.+++++|.+.+.+.+++.+.......++.+...++++.++++++.+++++++||++|+..+++.+. . .++
T Consensus 7 ~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sgt~al~~~l~~l~--~--------~~g 76 (373)
T 3frk_A 7 SFKPMHDEIEYEIKFKFEEIYKRNWFILGDEDKKFEQEFADYCNVNYCIGCGNGLDALHLILKGYD--I--------GFG 76 (373)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCCSSSHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHTT--C--------CTT
T ss_pred CCCcccCCCCHHHHHHHHHHHHCCCccCCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC--C--------CCc
Confidence 456665555544444433211111234566788999999999998899999999999999998762 1 158
Q ss_pred ceEEEEcCCcccCccccccccCCCCcCCCCCCCC-CCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 012363 191 TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM-PGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFL 269 (465)
Q Consensus 191 ~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l 269 (465)
++|++.+++|++....+...+....+. +.. ..... |+++|++++++ ++++|+ |+++ .|...+ +
T Consensus 77 d~Vi~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~----d~~~l~~~l~~-~~~~v~--~~n~-~G~~~~----l 140 (373)
T 3frk_A 77 DEVIVPSNTFIATALAVSYTGAKPIFV----EPDIRTYNI----DPSLIESAITE-KTKAII--AVHL-YGQPAD----M 140 (373)
T ss_dssp CEEEEETTSCTHHHHHHHHHSCEEEEE----CEETTTTEE----CGGGTGGGCCT-TEEEEE--EECC-TTCCCC----H
T ss_pred CEEEECCCCcHHHHHHHHHcCCEEEEE----eccccccCc----CHHHHHHhcCC-CCeEEE--EECC-CcCccc----H
Confidence 899999999998765543333221111 111 01111 88999999975 567776 4443 455544 8
Q ss_pred HHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec----ccCCC-ccceeeEEeC-HHHHhhccCC----
Q 012363 270 QFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA----KPLAG-GLPIGAALVT-EKVASAINYG---- 339 (465)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s----K~lg~-G~~iG~v~~~-~~i~~~~~~~---- 339 (465)
++|.++|++||++||+||+|+.. . .+.....+..+|++++| |++++ |. .|+++++ +++.+.+...
T Consensus 141 ~~i~~l~~~~~~~li~D~a~~~g-~---~~~~~~~~~~~d~~~~S~~~~K~l~~~g~-gg~~~~~~~~~~~~~~~~~~~g 215 (373)
T 3frk_A 141 DEIKRIAKKYNLKLIEDAAQAHG-S---LYKGMKVGSLGDAAGFSFYPAKNLGSLGD-GGAVVTNDKDLAEKIKALSNYG 215 (373)
T ss_dssp HHHHHHHHHHTCEEEEECTTCTT-C---EETTEETTSSSSEEEEECCTTSSSCCSSS-CEEEEESCHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHcCCEEEEECCcccC-C---EECCEeccccccEEEEeCcCCCccCccce-eEEEEeCCHHHHHHHHHHHhcC
Confidence 99999999999999999999732 1 12223344446888777 99987 64 7888876 4565544321
Q ss_pred --------CCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceee--e--ccceE--EEEE
Q 012363 340 --------DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDV--R--GLGLI--IGIE 405 (465)
Q Consensus 340 --------~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--~--~~g~~--~~i~ 405 (465)
..+.++..+++.++++...++.+ +++.++.+++.+++++.|. +.+ +... . ....+ +.+.
T Consensus 216 ~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~~~~~l~----~~~-~~~~~~~~~~~~~~~~~~~~ 288 (373)
T 3frk_A 216 SEKKYHHIYKGFNSRLDELQAGFLRVKLKYL--DKWNEERRKIAQKYIAGIN----NPN-VIIPVEADYAKHVWYTFVIR 288 (373)
T ss_dssp CSBTTBCCSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHCC----CTT-EECCCCCTTEECCCSSEEEE
T ss_pred cccCCccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhc----cCc-eEeccCCCCCceeeEEEEEE
Confidence 11234456777777766655532 3445555555555555543 333 1111 0 11122 2233
Q ss_pred ecCChHHHHHHHHHCCceEeecCC--------------------------CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012363 406 FDVSATPVVDACRDSGLLVLTAGK--------------------------GNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 406 ~~~~~~~~~~~l~~~Gv~v~~~~~--------------------------~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
. .+..++.+.|.++||.+.+... ...+|++++..+|++|++++++.|+++..
T Consensus 289 ~-~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~ 366 (373)
T 3frk_A 289 S-EKRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKL 366 (373)
T ss_dssp E-SSHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC-
T ss_pred e-CCHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhh
Confidence 2 3677899999999999874320 05799999999999999999999987654
No 181
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.91 E-value=1.1e-23 Score=213.87 Aligned_cols=320 Identities=16% Similarity=0.131 Sum_probs=197.8
Q ss_pred CCHHHHHHHHHHHhh-cccccC----CCCCHH---HHHHH-HHHHhhcCCCeEEe-cCCHHHHHHHHHHHHHHHhhhcCC
Q 012363 115 GDADWIKAVVDQANV-LTHVSN----MYYSIP---QIELA-KRLVACSFADRVFF-SNTGTEANEAAIKFARKFQRHSNP 184 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~-~~~~~~----~~~~~~---~~~la-~~l~~~~~~~~v~~-~~sG~eA~~~al~~a~~~t~~~~~ 184 (465)
.+|+|++|+.+++.. ...++. ...... .++++ +++++.++.+.+.+ ++||++|+..+++.++.
T Consensus 57 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~~~v~~~sGs~a~~~a~~~~~~------- 129 (447)
T 3h7f_A 57 VPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEFANVQPHSGAQANAAVLHALMS------- 129 (447)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCC-------
T ss_pred CCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCceEEEeCCHHHHHHHHHHHhcC-------
Confidence 489999999988753 221111 112222 25566 88999889777777 99999999999987652
Q ss_pred CCCCCCceEEEEcCCcccCccccc--cccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEE-cccCCCCCc
Q 012363 185 DSKEPATEFVSFTNSFHGRTMGAL--ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV-EPIQGEGGI 261 (465)
Q Consensus 185 ~~~~~~~~ii~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~-ep~~~~~G~ 261 (465)
++++|++.+++|+++..... ...+.. +.....+..++.. ..|+++|+++++..++++|++ .|++++++
T Consensus 130 ----~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~---~~d~~~l~~~i~~~~~~~i~~~~~~~~~~~- 200 (447)
T 3h7f_A 130 ----PGERLLGLDLANGGHLTHGMRLNFSGKL-YENGFYGVDPATH---LIDMDAVRATALEFRPKVIIAGWSAYPRVL- 200 (447)
T ss_dssp ----TTCEEEEECGGGTCCGGGTCTTSHHHHS-SEEEEECCCTTTC---SCCHHHHHHHHHHHCCSEEEEECSSCCSCC-
T ss_pred ----CCCEEEecCcccccccchhhhhhhcCCe-eEEEEcCcCcccC---CcCHHHHHHHHHhcCCeEEEEcCCCCCCcc-
Confidence 68999999999987432211 111110 0000011111110 138999999985323445555 67766543
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEeccc-cCCCCCCccccccccCCcccEE--EecccCCCccceeeEEeCHHHHhhccC
Q 012363 262 YSATKEFLQFLRDACDDAGALLVFDEVQ-CGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAALVTEKVASAINY 338 (465)
Q Consensus 262 ~~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~ 338 (465)
++++|+++|++||++||+||+| .|+.+.|..... .. ..|++ ++||+++ |+++|++++++++++.+..
T Consensus 201 ------~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~-~~--~~di~~~s~sK~l~-G~~gG~i~~~~~~~~~l~~ 270 (447)
T 3h7f_A 201 ------DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSP-VP--HADVVSTTVHKTLG-GGRSGLIVGKQQYAKAINS 270 (447)
T ss_dssp ------CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCS-TT--TCSEEEEESSGGGC-CCSCEEEEECGGGHHHHHH
T ss_pred ------CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCC-CC--CCcEEEecCCcCCC-CCCeEEEEECHHHHHHHhh
Confidence 3899999999999999999996 444333321111 01 13555 6789985 6888999999988877654
Q ss_pred CCCcCCCCC-hHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCceeee--ccceEEEEEec---CC
Q 012363 339 GDHGSTFAG-SPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKDVR--GLGLIIGIEFD---VS 409 (465)
Q Consensus 339 ~~~~~t~~~-~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~g~~~~i~~~---~~ 409 (465)
.....++++ +...++++.+++....+ +++.+++.++.+++.+.|.+.+...+.+..+. ..+.++++++. ..
T Consensus 271 ~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 350 (447)
T 3h7f_A 271 AVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSPLD 350 (447)
T ss_dssp HHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEECTTSSCC
T ss_pred hcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEEcCCCCCC
Confidence 323333333 33345555566665433 34666777777777777765421112222222 24556777763 24
Q ss_pred hHHHHHHHHHCCceEe----ec--C---CCCEEEEecCCC----CcHHHHHHHHHHHHHHHHHh
Q 012363 410 ATPVVDACRDSGLLVL----TA--G---KGNVVRLVPPLI----ISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 410 ~~~~~~~l~~~Gv~v~----~~--~---~~~~lRi~~~~~----~t~e~i~~~l~~l~~~l~~~ 460 (465)
...+.+.|.++||++. +. . .++.+|+.++.. ++++|+++++++|++++.+.
T Consensus 351 ~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~~ 414 (447)
T 3h7f_A 351 GQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALATG 414 (447)
T ss_dssp HHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 4556666667799987 33 1 136799987654 67999999999999998754
No 182
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.91 E-value=1.3e-23 Score=208.35 Aligned_cols=319 Identities=10% Similarity=0.034 Sum_probs=202.0
Q ss_pred EEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCC---CeEEecCCHHHHHHHHHHHH
Q 012363 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA---DRVFFSNTGTEANEAAIKFA 175 (465)
Q Consensus 99 ~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~---~~v~~~~sG~eA~~~al~~a 175 (465)
.++|+..+.+.. ..+|++++++. .. ..+.....++++.+++.++. +++++++||++|+..+++.+
T Consensus 29 ~v~~~~~~~~~~---~~~~~v~~a~~----~~-----~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~ 96 (374)
T 2aeu_A 29 ALYDLSGLSGGF---LIDEKDKALLN----TY-----IGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL 96 (374)
T ss_dssp GCEECSSCCCCC---CCCHHHHHHHT----ST-----THHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH
T ss_pred ceeeecccCCCC---CCCHHHHHHHH----Hh-----cCchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC
Confidence 455766543221 25677877775 11 11123356777777777786 89999999999999999855
Q ss_pred HHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEE-EEEcc
Q 012363 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAA-VFVEP 254 (465)
Q Consensus 176 ~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~-vi~ep 254 (465)
. +++|++.+|+||++........ .....+..+ .|+++|+++ ++ ++++ |++++
T Consensus 97 ----~---------gd~Vl~~~~~y~~~~~~~~~~~----------~~g~~~~~v--~d~~~l~~~-~~-~~~~~v~~~~ 149 (374)
T 2aeu_A 97 ----K---------PKKVIHYLPELPGHPSIERSCK----------IVNAKYFES--DKVGEILNK-ID-KDTLVIITGS 149 (374)
T ss_dssp ----C---------CSEEEEECSSSSCCTHHHHHHH----------HTTCEEEEE--SCHHHHHTT-CC-TTEEEEEECB
T ss_pred ----C---------CCEEEEecCCCCccHHHHHHHH----------HcCcEEEEe--CCHHHHHhc-CC-CccEEEEEcc
Confidence 1 7899999999998653211000 001122333 589999998 54 5677 77776
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE--EecccCCCccceeeEEeCHHH
Q 012363 255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAALVTEKV 332 (465)
Q Consensus 255 ~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~~~i 332 (465)
.++.+|. +...+++|.++|++||++||+||+|..+ ..+...........+|++ ++||+++| +++|++++++++
T Consensus 150 p~nptG~---~~~~l~~i~~l~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~di~~~S~sK~l~g-~~~G~~~~~~~~ 224 (374)
T 2aeu_A 150 TMDLKVI---ELENFKKVINTAKNKEAIVFVDDASGAR-VRLLFNQPPALKLGADLVVTSTDKLMEG-PRGGLLAGKKEL 224 (374)
T ss_dssp CTTSCBC---CHHHHHHHHHHHHHHTCCEEEECTTHHH-HHHHTTCCCHHHHTCSEEEEETTSSSSS-CSCEEEEEEHHH
T ss_pred CCCCCCC---CcccHHHHHHHHHHcCCEEEEECCcccc-cccccccCCccccCCcEEEecCcccccC-cceEEEEECHHH
Confidence 6666553 4566999999999999999999988643 111100000111235666 58899864 799999999999
Q ss_pred HhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHH----HHHHHHHHHcC---CCce-eeeccceEEEE
Q 012363 333 ASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYF----KETLKQKLARN---PHVK-DVRGLGLIIGI 404 (465)
Q Consensus 333 ~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l----~~~l~~~~~~~---~~~~-~~~~~g~~~~i 404 (465)
++.+.........+.+++.++++.++|+.+. .+..++..++.+.+ ++.|.+.+... +.+. ..++.|.+++.
T Consensus 225 ~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~ 303 (374)
T 2aeu_A 225 VDKIYIEGTKFGLEAQPPLLAGIYRALKNFN-LERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKR 303 (374)
T ss_dssp HHHHHHHHHTTTCBCCHHHHHHHHHHHHHCC-HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEE
T ss_pred HHHHHHhhccccCCCCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceEEEEe
Confidence 8877643222233568899999999998763 22344455555555 56666654443 1112 23455666554
Q ss_pred EecCCh------HHHHHHHH-HCCceEeecCC----CCEEEEecCC-CCcHHHHHHHHHHHHHHHHHhhh
Q 012363 405 EFDVSA------TPVVDACR-DSGLLVLTAGK----GNVVRLVPPL-IISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 405 ~~~~~~------~~~~~~l~-~~Gv~v~~~~~----~~~lRi~~~~-~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
.-.... .+++..++ ++||.+.++.. ++++||+++. ..++.+++++++.|+++++++.+
T Consensus 304 ~~~~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~~~ 373 (374)
T 2aeu_A 304 VYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAFK 373 (374)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHTC
T ss_pred ecccccccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 311111 12554554 68999987531 3579998763 23344588999999998887653
No 183
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.91 E-value=1.5e-22 Score=206.99 Aligned_cols=315 Identities=16% Similarity=0.156 Sum_probs=207.7
Q ss_pred CCCCCHHHHHHHHHHHhhcccccCCCCC--------HHHHHHHHHHHhhcCCC-eEEecCCHHHHHHHHHHHHHHHhhhc
Q 012363 112 LGHGDADWIKAVVDQANVLTHVSNMYYS--------IPQIELAKRLVACSFAD-RVFFSNTGTEANEAAIKFARKFQRHS 182 (465)
Q Consensus 112 lGh~~p~v~~a~~~~~~~~~~~~~~~~~--------~~~~~la~~l~~~~~~~-~v~~~~sG~eA~~~al~~a~~~t~~~ 182 (465)
.+|.+|++.+++.++.. .+ +.+.. +...++++++++.++.+ .+++++||++|+..++++++.+....
T Consensus 75 ~~~~~p~v~~~~~~~~~---~~-~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~ 150 (474)
T 1wyu_B 75 TMKYNPKLHEEAARLFA---DL-HPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDR 150 (474)
T ss_dssp CCCCCCHHHHHHHHTTS---SC-CTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHH---hc-CCCCchhhChHHHHHHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhc
Confidence 45778999888877622 11 22222 33778899999988855 45688999999999998887653211
Q ss_pred CCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC-----CHHHHHhhcCCCCeEEEEEcccCC
Q 012363 183 NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPGKTAAVFVEPIQG 257 (465)
Q Consensus 183 ~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~a~vi~ep~~~ 257 (465)
+. ..++++||+.++.| +....+....+. .+..+|.+ |+++|++++++ ++++|+++..+
T Consensus 151 Gd--~~~r~~Vlv~~~~h-~~~~~~~~~~G~------------~vv~v~~~~~~~~d~~~L~~~i~~-~t~~v~~~~pn- 213 (474)
T 1wyu_B 151 GE--GRTRRVVLVPDSAH-GSNPATASMAGY------------QVREIPSGPEGEVDLEALKRELGP-HVAALMLTNPN- 213 (474)
T ss_dssp TC--TTTCCEEEEETTSC-THHHHHHHHTTC------------EEEEECBCTTSSBCHHHHHHHCST-TEEEEEECSSC-
T ss_pred CC--ccCCCEEEEeCCcC-hhhHHHHHHCCC------------EEEEecCCCCCCcCHHHHHHhhCC-CceEEEEECCC-
Confidence 10 00244888888665 544444333221 12223322 89999999975 57777777644
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEe--cccCCC-----ccceeeEEeCH
Q 012363 258 EGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL--AKPLAG-----GLPIGAALVTE 330 (465)
Q Consensus 258 ~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~--sK~lg~-----G~~iG~v~~~~ 330 (465)
+.|.+. +.+++|.++|++||+++|+||+|..+ ..|.. ....+ .+|++++ +|++++ |+++|++++++
T Consensus 214 ~~G~~~---~~l~~i~~l~~~~g~~li~Dea~~~~-~~g~~-~~~~~--g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~ 286 (474)
T 1wyu_B 214 TLGLFE---RRILEISRLCKEAGVQLYYDGANLNA-IMGWA-RPGDM--GFDVVHLNLHKTFTVPHGGGGPGSGPVGVKA 286 (474)
T ss_dssp TTSCCC---TTHHHHHHHHHHHTCEEEEEGGGGGG-TTTTC-CHHHH--TCSEEECCTTTTTCCCCTTSCCCCCCEEECG
T ss_pred CCcccC---CCHHHHHHHHHHcCCEEEEeCchhhh-hccCC-CcccC--CCcEEEEeCccccccCCCCCCCCeEEEEEcH
Confidence 456552 23999999999999999999999643 23321 11222 3788876 798863 36999999999
Q ss_pred HHHhhccCC-------------------CCcCCCCChHHHHHHHHHHHHHhcCchH---HHHHHHHHHHHHHHHHHHHHc
Q 012363 331 KVASAINYG-------------------DHGSTFAGSPLVCNAAIAVLDKISNPAF---LASVSKKGHYFKETLKQKLAR 388 (465)
Q Consensus 331 ~i~~~~~~~-------------------~~~~t~~~~~~~~~aa~a~L~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~ 388 (465)
++++.+... ....++++|+++++++.++++.+..+.+ .+++.++.+++.+.|++. .
T Consensus 287 ~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~--g 364 (474)
T 1wyu_B 287 HLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK--G 364 (474)
T ss_dssp GGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--T
T ss_pred HHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--C
Confidence 988776510 0112345788889998888875533333 566677777777777663 2
Q ss_pred CCCceeeeccceE--EEEEe--cCChHHHHHHHHHCCceEeecC----CCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012363 389 NPHVKDVRGLGLI--IGIEF--DVSATPVVDACRDSGLLVLTAG----KGNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 389 ~~~~~~~~~~g~~--~~i~~--~~~~~~~~~~l~~~Gv~v~~~~----~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
+... .+.+.+ +++.+ +.+..++.+.|.++||.+.... .++++||+++..+|++++++++++|++++++
T Consensus 365 ~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Gi~~~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 365 YRVP---YDGPSMHEFVAQPPEGFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp CBCS---SCSSCCSCEEEBCSTTCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred cEec---CCCCcceEEEEEcCCCCCHHHHHHHHHHCCccccccccccccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 2221 111222 44444 3467789999999999863221 1368999998888999999999999988754
No 184
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.91 E-value=2.3e-23 Score=209.03 Aligned_cols=287 Identities=18% Similarity=0.138 Sum_probs=191.7
Q ss_pred cccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccccc
Q 012363 132 HVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT 211 (465)
Q Consensus 132 ~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~ 211 (465)
+.+..++++...+|+++|+++.+.+.+++++||++|+..+++.+. .++++||+.+++||+.........
T Consensus 73 ~~y~r~~~p~~~~l~~~la~~~g~~~~~~~~sG~~Ai~~al~~l~-----------~~Gd~Vi~~~~~y~~~~~~~~~~~ 141 (414)
T 3ndn_A 73 YVYSRYGNPTVSVFEERLRLIEGAPAAFATASGMAAVFTSLGALL-----------GAGDRLVAARSLFGSCFVVCSEIL 141 (414)
T ss_dssp CCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTC-----------CTTCEEEEESCCCHHHHHHHHTHH
T ss_pred cCcCCCCChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHh-----------CCCCEEEEcCCccchHHHHHHHHH
Confidence 445667888899999999999998899999999999999988654 268999999999998653321100
Q ss_pred CCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC
Q 012363 212 SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291 (465)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g 291 (465)
......+.++|.+|+++|++++++ ++++|++++.++++|.+.+ +++|+++|++||++||+||+|+.
T Consensus 142 ---------~~~g~~~~~v~~~d~~~l~~ai~~-~t~~v~le~p~NptG~~~~----l~~i~~la~~~g~~livDe~~~~ 207 (414)
T 3ndn_A 142 ---------PRWGVQTVFVDGDDLSQWERALSV-PTQAVFFETPSNPMQSLVD----IAAVTELAHAAGAKVVLDNVFAT 207 (414)
T ss_dssp ---------HHTTCEEEEECTTCHHHHHHHTSS-CCSEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTH
T ss_pred ---------HHcCcEEEEeCCCCHHHHHHhcCC-CCeEEEEECCCCCCCcccc----HHHHHHHHHHcCCEEEEECCCcc
Confidence 012244567788899999999975 5678888887777777755 99999999999999999999862
Q ss_pred CCCCCccccccccCCcccEEEecccCCC-c-cceeeEEeCHHHHh-hccCCCCcCCCCChHHHHHHHHHHHHHhcCchHH
Q 012363 292 LGRTGYLWAHEHYGIFPDIMTLAKPLAG-G-LPIGAALVTEKVAS-AINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL 368 (465)
Q Consensus 292 ~gr~g~~~~~~~~~~~pdi~t~sK~lg~-G-~~iG~v~~~~~i~~-~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~ 368 (465)
|.......++....+.++||++++ | +++|+++++++.+. .+...........+++.++++...++.+ +...
T Consensus 208 ----~~~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~~l--~~r~ 281 (414)
T 3ndn_A 208 ----PLLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLETL--AIRV 281 (414)
T ss_dssp ----HHHCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGGGH--HHHH
T ss_pred ----cccCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH--HHHH
Confidence 211112234555555678899987 7 89999999988765 4432111111233666666555555432 2234
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcee------------------eeccceEEEEEecCC-------hHHHHHHHHHCCce
Q 012363 369 ASVSKKGHYFKETLKQKLARNPHVKD------------------VRGLGLIIGIEFDVS-------ATPVVDACRDSGLL 423 (465)
Q Consensus 369 ~~~~~~~~~l~~~l~~~~~~~~~~~~------------------~~~~g~~~~i~~~~~-------~~~~~~~l~~~Gv~ 423 (465)
++..++.+++.+.|+ ++|.+.. .+|.|.+++++++.. ..+|.+.|...++.
T Consensus 282 ~~~~~~a~~l~~~L~----~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 357 (414)
T 3ndn_A 282 QHSNASAQRIAEFLN----GHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLIDIS 357 (414)
T ss_dssp HHHHHHHHHHHHHHH----TCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCSSSEEC
T ss_pred HHHHHHHHHHHHHHh----cCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCccceEc
Confidence 445555555555443 4443322 245789999999532 34456665544444
Q ss_pred EeecC--------------------------CCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012363 424 VLTAG--------------------------KGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 424 v~~~~--------------------------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
+..++ .++.+|+++.+. +.+++++.|+++|
T Consensus 358 ~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~e----~~~dli~dl~~al 413 (414)
T 3ndn_A 358 NNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGLE----DTDDLIADIDRAL 413 (414)
T ss_dssp SCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCSS----CHHHHHHHHHHHH
T ss_pred CCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCcC----CHHHHHHHHHHhh
Confidence 33221 146899987754 4555666666654
No 185
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.91 E-value=3.5e-23 Score=208.33 Aligned_cols=315 Identities=16% Similarity=0.131 Sum_probs=186.1
Q ss_pred CCHHHHHHHHHHHhh-ccccc---CCCC----CHHHHHHH-HHHHhhcCCCeE-EecCCHHHHHHHHHHHHHHHhhhcCC
Q 012363 115 GDADWIKAVVDQANV-LTHVS---NMYY----SIPQIELA-KRLVACSFADRV-FFSNTGTEANEAAIKFARKFQRHSNP 184 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~-~~~~~---~~~~----~~~~~~la-~~l~~~~~~~~v-~~~~sG~eA~~~al~~a~~~t~~~~~ 184 (465)
.||+|++|+.+++.. ...+. ..+. .+...+++ +++++.++.+.+ ++++||++|+..+++.+.
T Consensus 44 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~v~~~~Gs~a~~~al~~~~-------- 115 (425)
T 3ecd_A 44 VSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGHANVQPHSGAQANGAVMLALA-------- 115 (425)
T ss_dssp CCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC--------
T ss_pred CCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCCceeecCchHHHHHHHHHHcc--------
Confidence 489999999998843 21110 0111 11345555 677788886666 459999999999998764
Q ss_pred CCCCCCceEEEEcCCcccCc-ccccc-ccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEc-ccCCCCCc
Q 012363 185 DSKEPATEFVSFTNSFHGRT-MGALA-LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE-PIQGEGGI 261 (465)
Q Consensus 185 ~~~~~~~~ii~~~~~yhg~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~e-p~~~~~G~ 261 (465)
.++++|++.+++|++.. ..... ..+.. +.....+..++.. ..|+++|+++++..++++|+++ |++++
T Consensus 116 ---~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~---~~d~~~l~~~i~~~~~~~v~~~~~~~~~--- 185 (425)
T 3ecd_A 116 ---KPGDTVLGMSLDAGGHLTHGAKPALSGKW-FNALQYGVSRDTM---LIDYDQVEALAQQHKPSLIIAGFSAYPR--- 185 (425)
T ss_dssp ---CTTCEEEEECC-------------------CEEEEECCCTTTS---SCCHHHHHHHHHHHCCSEEEEECSCCCS---
T ss_pred ---CCCCEEEEcccccccceecchhhhhcccc-eeeeecCCCcccC---ccCHHHHHHHHhhcCCcEEEEccccCCC---
Confidence 26899999999998832 22211 11110 0000001111100 1289999999963345677766 55532
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEeccc-cCCCCCCccccccccCCcccEE--EecccCCCccceeeEEeC-HHHHhhcc
Q 012363 262 YSATKEFLQFLRDACDDAGALLVFDEVQ-CGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAALVT-EKVASAIN 337 (465)
Q Consensus 262 ~~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~-~~i~~~~~ 337 (465)
..+ +++|+++|++||++||+||+| .|+.+.+..... .. .+|++ ++||++ +|+++|+++++ +++.+.+.
T Consensus 186 ~~~----l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~--~~-~~di~~~s~sK~l-~g~~~g~~~~~~~~~~~~~~ 257 (425)
T 3ecd_A 186 KLD----FARFRAIADSVGAKLMVDMAHIAGVIAAGRHANP--VE-HAHVVTSTTHKTL-RGPRGGFVLTNDEEIAKKIN 257 (425)
T ss_dssp CCC----HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCG--GG-TCSEEEEESSGGG-CCCSCEEEEESCHHHHHHHH
T ss_pred cCC----HHHHHHHHHHcCCEEEEECcChHhhhhcccccCc--hh-cCcEEEecCCccc-CCCCcEEEEeCCHHHHHHHH
Confidence 222 899999999999999999995 444333332111 11 14565 567999 45689999998 56766664
Q ss_pred CCCCc-CCCCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCceee--eccceEEEEEec---C
Q 012363 338 YGDHG-STFAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKDV--RGLGLIIGIEFD---V 408 (465)
Q Consensus 338 ~~~~~-~t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--~~~g~~~~i~~~---~ 408 (465)
..... .+.+.++..++++.+++..... +++.++++++.+++++.|.+. +. ..+ .+.+.++++.+. .
T Consensus 258 ~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~-~~~~~~~~~~~~~~~~~~~~~ 332 (425)
T 3ecd_A 258 SAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG----GV-DLVTGGTDNHLLLVDLRPKGL 332 (425)
T ss_dssp HHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT----TC-EEGGGSCSSSEEEEECGGGTC
T ss_pred hhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC----CC-eeccCCCCceEEEEEeCCCCC
Confidence 32222 2223344444444444443322 356666777777777776652 22 122 135677888773 2
Q ss_pred ChHHHHHHHHHCCceEe----ecC-----CCCEEEEecCCC----CcHHHHHHHHHHHHHHHHHh
Q 012363 409 SATPVVDACRDSGLLVL----TAG-----KGNVVRLVPPLI----ISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 409 ~~~~~~~~l~~~Gv~v~----~~~-----~~~~lRi~~~~~----~t~e~i~~~l~~l~~~l~~~ 460 (465)
....+.+.|.++||.+. |+. ..+.+|++++.. ++++++++++++|++++++.
T Consensus 333 ~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 333 KGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp CHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 56678888889999998 321 124799986544 45999999999999998875
No 186
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.91 E-value=9.5e-23 Score=202.93 Aligned_cols=306 Identities=16% Similarity=0.140 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEE
Q 012363 117 ADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196 (465)
Q Consensus 117 p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~ 196 (465)
|++++++.++++.... ..++.+...+++++++++++.+..++++||++|+..+++.+. . .++++|++.
T Consensus 17 ~~~~~a~~~~l~~~~~--~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~al~~~l~~l~--~--------~~gd~Vi~~ 84 (388)
T 1b9h_A 17 DAERNGLVRALEQGQW--WRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMG--V--------GPGTEVIVP 84 (388)
T ss_dssp HHHHHHHHHHHHTSCC--BTTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTT--C--------CTTCEEEEE
T ss_pred HHHHHHHHHHHHcCCe--eecCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC--C--------CCcCEEEEC
Confidence 8999999999876322 234455688999999999986666667778999999998762 1 157899999
Q ss_pred cCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q 012363 197 TNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC 276 (465)
Q Consensus 197 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~ 276 (465)
+++||+....+...+....+. +..++.. ..|+++|++++++ ++++|+ |+|++ |.+.+ +++|.++|
T Consensus 85 ~~~~~~~~~~~~~~g~~~~~v----~~~~~~~---~~d~~~l~~~i~~-~~~~v~--~~n~t-G~~~~----l~~i~~la 149 (388)
T 1b9h_A 85 AFTFISSSQAAQRLGAVTVPV----DVDAATY---NLDPEAVAAAVTP-RTKVIM--PVHMA-GLMAD----MDALAKIS 149 (388)
T ss_dssp SSSCTHHHHHHHHTTCEEEEE----CBCTTTC---CBCHHHHHHHCCT-TEEEEC--CBCGG-GCCCC----HHHHHHHH
T ss_pred CCccHHHHHHHHHcCCEEEEE----ecCCCcC---CCCHHHHHHhcCc-CceEEE--EeCCc-cCcCC----HHHHHHHH
Confidence 999998876543333221111 1111100 0289999999975 566666 76665 44444 89999999
Q ss_pred HHhCCEEEEeccccC-CCCCCccccccccCCcccEEEec--ccCCCccceeeEEeCHH-H--HhhccC---CC-------
Q 012363 277 DDAGALLVFDEVQCG-LGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEK-V--ASAINY---GD------- 340 (465)
Q Consensus 277 ~~~g~llI~DEv~~g-~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~-i--~~~~~~---~~------- 340 (465)
++||++||+||+|+. ....|.. ...++ ..++.+|| |++++ .++|+++++++ + ++.+.. ..
T Consensus 150 ~~~~~~li~D~a~~~g~~~~~~~--~~~~~-~i~~~S~s~~K~l~g-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (388)
T 1b9h_A 150 ADTGVPLLQDAAHAHGARWQGKR--VGELD-SIATFSFQNGKLMTA-GEGGAVVFPDGETEKYETAFLRHSCGRPRDDRR 225 (388)
T ss_dssp HHHTCCBCEECTTCTTCEETTEE--GGGSS-SCEEEECCTTSSSCS-SSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSS
T ss_pred HHcCCEEEEecchhcCCccCCee--ccccc-ceEEEEccCCCcccC-CCeEEEEECCHHHHHHHHHHHHHhCCCCccCcc
Confidence 999999999999973 3222221 22222 24556677 66655 48899998875 5 454421 00
Q ss_pred -----CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceee-------eccceEEEEEecC
Q 012363 341 -----HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDV-------RGLGLIIGIEFDV 408 (465)
Q Consensus 341 -----~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-------~~~g~~~~i~~~~ 408 (465)
.+.++..+++.++++.+.++.+ ++..++.+++.+++.+.|+ +++.+... +..+.++++.++.
T Consensus 226 ~~~~~~g~~~~~~~~~~a~~~~~~~~l--~~~~~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (388)
T 1b9h_A 226 YFHKIAGSNMRLNEFSASVLRAQLARL--DEQIAVRDERWTLLSRLLG----AIDGVVPQGGDVRADRNSHYMAMFRIPG 299 (388)
T ss_dssp CCCCSCCCBCBCBHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHH----TSTTCEECCCCTTCCBCCCSEEEEECTT
T ss_pred ceeecccccCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhc----cCCCccccCCCcCCCccceEEEEEEeCC
Confidence 0122335666666655555433 2344555555555555554 34322222 2336788888853
Q ss_pred ----ChHHHHHHHHHCCceEeecCCC--------------------------------CEEEEecCCCC-cHHHHHHHHH
Q 012363 409 ----SATPVVDACRDSGLLVLTAGKG--------------------------------NVVRLVPPLII-SEQELDQAVE 451 (465)
Q Consensus 409 ----~~~~~~~~l~~~Gv~v~~~~~~--------------------------------~~lRi~~~~~~-t~e~i~~~l~ 451 (465)
+..++.+.|.++||.+.++... +.+||.+...+ |++|++++++
T Consensus 300 ~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~ 379 (388)
T 1b9h_A 300 LTEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAE 379 (388)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHH
Confidence 3567999999999999754210 25899888888 9999999999
Q ss_pred HHHHHHHH
Q 012363 452 ILCKTLPV 459 (465)
Q Consensus 452 ~l~~~l~~ 459 (465)
.|++++++
T Consensus 380 ~l~~~~~~ 387 (388)
T 1b9h_A 380 IIADAVAR 387 (388)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99988764
No 187
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.91 E-value=1.6e-23 Score=208.80 Aligned_cols=304 Identities=14% Similarity=0.137 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEE
Q 012363 117 ADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196 (465)
Q Consensus 117 p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~ 196 (465)
|++.+++.+.+....+ . .+.+...++++.++++++.+.+++++||++|+..+++.+. . .++++|++.
T Consensus 36 ~~~~~a~~~~~~~~~~--~-~~~~~~~~l~~~la~~~~~~~~i~~~~gt~al~~~l~~~~--~--------~~gd~vl~~ 102 (391)
T 3dr4_A 36 GNERDYVLECMDTTWI--S-SVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMG--I--------GPGDEVIVP 102 (391)
T ss_dssp SSHHHHHHHHHHHTCC--S-SCSHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHT--C--------CTTCEEEEE
T ss_pred HHHHHHHHHHHHcCCc--c-CCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcC--C--------CCcCEEEEC
Confidence 5688888887765321 1 2466788999999999998899999999999999999772 1 158899999
Q ss_pred cCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q 012363 197 TNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC 276 (465)
Q Consensus 197 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~ 276 (465)
+++|++....+...+....+. +..+... .-|+++|++++++ ++++|++ ++ ..|...+ +++|.++|
T Consensus 103 ~~~~~~~~~~~~~~g~~~~~~----~~~~~~~---~~d~~~l~~~~~~-~~~~v~~--~n-~tG~~~~----~~~i~~l~ 167 (391)
T 3dr4_A 103 SLTYIASANSVTYCGATPVLV----DNDPRTF---NLDAAKLEALITP-RTKAIMP--VH-LYGQICD----MDPILEVA 167 (391)
T ss_dssp SSSCTHHHHHHHHTTCEEEEE----CBCTTTC---SBCGGGSGGGCCT-TEEEECC--BC-GGGCCCC----HHHHHHHH
T ss_pred CCchHHHHHHHHHCCCEEEEE----ecCcccc---CcCHHHHHHhcCC-CceEEEE--EC-CCCChhh----HHHHHHHH
Confidence 999998876554433222111 1110000 0178999999975 5677663 33 3455444 89999999
Q ss_pred HHhCCEEEEeccccCCCCCCccccccccCCcccEEEec----ccCCCccceeeEEeC-HHHHhhccCC-C----------
Q 012363 277 DDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA----KPLAGGLPIGAALVT-EKVASAINYG-D---------- 340 (465)
Q Consensus 277 ~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s----K~lg~G~~iG~v~~~-~~i~~~~~~~-~---------- 340 (465)
++||++||+||+|+.. .. +.....+..+|+.++| |++++| +.|+++.+ +++++.+... .
T Consensus 168 ~~~~~~li~D~a~~~g-~~---~~~~~~~~~~di~~~S~s~~K~l~~g-~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 242 (391)
T 3dr4_A 168 RRHNLLVIEDAAEAVG-AT---YRGKKSGSLGDCATFSFFGNAIITTG-EGGMITTNDDDLAAKMRLLRGQGMDPNRRYW 242 (391)
T ss_dssp HHTTCEEEEECTTCTT-CE---ETTEETTSSSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHHBTTCCTTSTTC
T ss_pred HHcCCEEEEECccccc-ce---ECCeeecccCCEEEEECCCCCcCCcC-CeEEEEECCHHHHHHHHHHHhcCCCCCCccc
Confidence 9999999999999731 11 1111223335777666 999764 57888776 4565544321 0
Q ss_pred ---CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCcee-----eeccceEEEEEec----C
Q 012363 341 ---HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKD-----VRGLGLIIGIEFD----V 408 (465)
Q Consensus 341 ---~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-----~~~~g~~~~i~~~----~ 408 (465)
.+..+..+++.++++...++.+ +++.++.+++.+++++.|.++ ....... ....+.++++.++ .
T Consensus 243 ~~~~g~~~~~~~l~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 318 (391)
T 3dr4_A 243 FPIVGFNYRMTNIQAAIGLAQLERV--DEHLAARERVVGWYEQKLARL--GNRVTKPHVALTGRHVFWMYTVRLGEGLST 318 (391)
T ss_dssp CSSCCCBCBCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHGGG--TTSEECCCCCTTSCCCCSSEEEEECSSCSS
T ss_pred ccccccccCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC--CccccCcCCCCCCcceeEEEEEEECCccch
Confidence 1122455666666665555432 456667777777777777654 2221111 1122334566653 2
Q ss_pred ChHHHHHHHHHCCceEeecCC-----------------------CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012363 409 SATPVVDACRDSGLLVLTAGK-----------------------GNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 409 ~~~~~~~~l~~~Gv~v~~~~~-----------------------~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
+..++.+.|.++||.+.++.. ...+|+.++..+|++||++++++|++++
T Consensus 319 ~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 319 TRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp CHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 477899999999999986530 2468999999999999999999998653
No 188
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.91 E-value=1.8e-24 Score=219.84 Aligned_cols=311 Identities=16% Similarity=0.178 Sum_probs=201.6
Q ss_pred CCCCCHHHHHHHHHH----HhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCC
Q 012363 112 LGHGDADWIKAVVDQ----ANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSK 187 (465)
Q Consensus 112 lGh~~p~v~~a~~~~----~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~ 187 (465)
.|-.+|.|.++.... .+...+.+..+..+...+++++++++++.+++++++||++|+..+++++ +
T Consensus 101 ~~~~~~~i~~a~~~~~~~~~~~~~~~Y~~~g~~~~~~l~~~la~~~g~~~~i~~~sGt~al~~~l~~~----~------- 169 (464)
T 1ibj_A 101 FDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSAVTHLI----K------- 169 (464)
T ss_dssp TCCSSCCCCCCSBCCCSSSSCCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHTTS----C-------
T ss_pred CCCCCccHHhhhhhhhhcccccCCccccCCCCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHh----C-------
Confidence 344556676665532 1222222334566778999999999999889999999999998777522 1
Q ss_pred CCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHH
Q 012363 188 EPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKE 267 (465)
Q Consensus 188 ~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~ 267 (465)
++++||+.++.||++........ ......+..+|.+|+++|++++++ ++++|++++.++.+|.+.+
T Consensus 170 -~Gd~Vi~~~~~y~~~~~~~~~~~---------~~~G~~v~~v~~~d~~~l~~~i~~-~tk~v~l~~p~NptG~v~~--- 235 (464)
T 1ibj_A 170 -NGEEIVAGDDVYGGSDRLLSQVV---------PRSGVVVKRVNTTKLDEVAAAIGP-QTKLVWLESPTNPRQQISD--- 235 (464)
T ss_dssp -TTCEEEEESSCCHHHHHHHHHTS---------GGGTCEEEEECTTSHHHHHHHCCS-SEEEEEECSSCTTTCCCCC---
T ss_pred -CCCEEEEECCCchhHHHHHHHHH---------HHcCCEEEEeCCCCHHHHHHHhcc-CceEEEEeCCCCCCCEeec---
Confidence 68899999999988753210000 011133456677799999999974 6788888887777777764
Q ss_pred HHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE--EecccCCC--ccceeeEEeC-HHHHhhccCCCCc
Q 012363 268 FLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG--GLPIGAALVT-EKVASAINYGDHG 342 (465)
Q Consensus 268 ~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~--G~~iG~v~~~-~~i~~~~~~~~~~ 342 (465)
+++|.++|++||+++|+||+|... .... ..+ ++ .|++ +++|++++ |+++|+++++ +++++.+......
T Consensus 236 -l~~i~~la~~~gi~livDea~~~g-~~~~--~~~-~~--~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~ 308 (464)
T 1ibj_A 236 -IRKISEMAHAQGALVLVDNSIMSP-VLSR--PLE-LG--ADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNS 308 (464)
T ss_dssp -HHHHHHHHHTTTCEEEEECTTTCT-TTCC--GGG-TT--CSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHcCCEEEEECCCccc-ccCC--hhh-cC--CEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHh
Confidence 999999999999999999999732 1111 112 33 5665 68899986 7999999998 4787776532222
Q ss_pred CCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH----------HHcCCCce----eeeccceEEEEEecC
Q 012363 343 STFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQK----------LARNPHVK----DVRGLGLIIGIEFDV 408 (465)
Q Consensus 343 ~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~----------~~~~~~~~----~~~~~g~~~~i~~~~ 408 (465)
..++.+++.+.++.++|+.+. ..+++..+....+.+.+++. +..+|.+. ..++.|.+++++++.
T Consensus 309 ~g~~~~~~~~~a~~~al~~~~--~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~ 386 (464)
T 1ibj_A 309 EGSGLAPFDCWLCLRGIKTMA--LRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGS 386 (464)
T ss_dssp TTCBCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSC
T ss_pred cCCCCCHHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECC
Confidence 234557888888888776321 11222222223333333221 11222111 123457889998842
Q ss_pred C--hHHHHHHHHHCCceEeecC-------------------------C-CCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012363 409 S--ATPVVDACRDSGLLVLTAG-------------------------K-GNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 409 ~--~~~~~~~l~~~Gv~v~~~~-------------------------~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
. ...+.+.|...||.+..+. . ++++|++++. |++++++++|+++++++
T Consensus 387 ~~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~----edi~~li~~L~~al~~~ 462 (464)
T 1ibj_A 387 VALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAFKTF 462 (464)
T ss_dssp HHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS----SCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhcCcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC----CCHHHHHHHHHHHHhhc
Confidence 1 2346666666677665442 1 3679999876 78999999999988653
No 189
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.90 E-value=9e-24 Score=212.32 Aligned_cols=314 Identities=16% Similarity=0.128 Sum_probs=186.0
Q ss_pred CCHHHHHHHHHHHhh-cccc--c-----CCCCCHHHHH-HHHHHHhhcCCCeE-EecCCHHHHHHHHHHHHHHHhhhcCC
Q 012363 115 GDADWIKAVVDQANV-LTHV--S-----NMYYSIPQIE-LAKRLVACSFADRV-FFSNTGTEANEAAIKFARKFQRHSNP 184 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~-~~~~--~-----~~~~~~~~~~-la~~l~~~~~~~~v-~~~~sG~eA~~~al~~a~~~t~~~~~ 184 (465)
.||+|++|+.+++.. ...+ . .....+...+ .++++++.++.+.. +++++|++|+..+++.+.
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~~sGs~a~~~a~~~~~-------- 113 (420)
T 3gbx_A 42 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALL-------- 113 (420)
T ss_dssp CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC--------
T ss_pred CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEecCcHHHHHHHHHHhc--------
Confidence 689999999998843 2111 0 0111122333 34678888874433 346778999999988664
Q ss_pred CCCCCCceEEEEcCCcccCcccccc--ccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEE-cccCCCCCc
Q 012363 185 DSKEPATEFVSFTNSFHGRTMGALA--LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV-EPIQGEGGI 261 (465)
Q Consensus 185 ~~~~~~~~ii~~~~~yhg~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~-ep~~~~~G~ 261 (465)
.+++.|++.+++|++....... ..+......++ +...+ ...|+++|+++++++++++|++ +|+++ .
T Consensus 114 ---~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~----~~~d~~~l~~~i~~~~~~~v~~~~~~~~---~ 182 (420)
T 3gbx_A 114 ---QPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPY-GIDES----GKIDYDEMAKLAKEHKPKMIIGGFSAYS---G 182 (420)
T ss_dssp ---CTTCEEEEEEEC------------CHHHHSEEEEE-EECTT----CSCCHHHHHHHHHHHCCSEEEECCTTCC---S
T ss_pred ---CCCCEEEecchhhcceeccchhhhhcccceeEEec-cCCcc----CCcCHHHHHHHHHhcCCeEEEEecCccC---C
Confidence 2688999999988664321111 11000000000 00000 0148999999997534667777 44443 2
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEecccc-CCCCCCccccccccCCcccEEE--ecccCCCccceeeEEeCH---HHHhh
Q 012363 262 YSATKEFLQFLRDACDDAGALLVFDEVQC-GLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTE---KVASA 335 (465)
Q Consensus 262 ~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~gr~g~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~---~i~~~ 335 (465)
..+ +++|+++|++||++||+||+|. |+.+.|..... .. .+|+++ +||+++ |.+.|++++++ ++++.
T Consensus 183 ~~~----l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~--~~-~~di~~~s~sK~~~-g~~gg~~~~~~~~~~~~~~ 254 (420)
T 3gbx_A 183 VVD----WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNP--VP-HAHVVTTTTHKTLA-GPRGGLILAKGGDEELYKK 254 (420)
T ss_dssp CCC----HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCS--TT-TSSEEEEESSGGGC-SCSCEEEEESSCCHHHHHH
T ss_pred ccC----HHHHHHHHHHcCCEEEEECCcchhceecccCCcc--cc-cCCEEEeecccCCC-CCCceEEEEcCCcHHHHHH
Confidence 333 8999999999999999999974 44333322111 11 267776 679997 45569999987 77776
Q ss_pred ccCCCCcCCCC-ChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCceeee--ccceEEEEEec--
Q 012363 336 INYGDHGSTFA-GSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKDVR--GLGLIIGIEFD-- 407 (465)
Q Consensus 336 ~~~~~~~~t~~-~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~g~~~~i~~~-- 407 (465)
+......++++ .+...++++.+++....+ +++.+++.++.+++++.|.+ .+ +..+. ..+.++++.+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g-~~~~~~~~~~~~~~~~~~~~ 329 (420)
T 3gbx_A 255 LNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLN----RG-YKVVSGGTENHLFLLDLVDK 329 (420)
T ss_dssp HHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH----TT-CEEGGGSCSSSEEEEECGGG
T ss_pred hhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh----cC-CeeccCCCCCeEEEEEcCCC
Confidence 65432333333 233444444445544322 34566677777777777665 22 22222 35677788773
Q ss_pred -CChHHHHHHHHHCCceEee-------cCC--CCEEEEecCCC----CcHHHHHHHHHHHHHHHHHh
Q 012363 408 -VSATPVVDACRDSGLLVLT-------AGK--GNVVRLVPPLI----ISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 408 -~~~~~~~~~l~~~Gv~v~~-------~~~--~~~lRi~~~~~----~t~e~i~~~l~~l~~~l~~~ 460 (465)
.....+.+.|.++||++.+ +.. +..+||+++.. .+++++++++++|++++++.
T Consensus 330 ~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 396 (420)
T 3gbx_A 330 NLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDNI 396 (420)
T ss_dssp TCCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhCc
Confidence 2466778888889999987 211 24599988755 45899999999999988764
No 190
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.90 E-value=1.8e-22 Score=201.98 Aligned_cols=289 Identities=16% Similarity=0.151 Sum_probs=192.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCC
Q 012363 135 NMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE 214 (465)
Q Consensus 135 ~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~ 214 (465)
..++++...+|+++|+++++.+..++++||++|+..+++ +. .++++|++.++.|++.........
T Consensus 62 ~r~~~p~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~-l~-----------~~gd~Vl~~~~~y~~~~~~~~~~~--- 126 (403)
T 3cog_A 62 SRSGNPTRNCLEKAVAALDGAKYCLAFASGLAATVTITH-LL-----------KAGDQIICMDDVYGGTNRYFRQVA--- 126 (403)
T ss_dssp ----CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHT-TS-----------CTTCEEEEESSCCHHHHHHHHHTG---
T ss_pred cCCCCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH-Hh-----------CCCCEEEEeCCCcchHHHHHHHHH---
Confidence 456777789999999999986666677788999999887 43 158899999999988543221110
Q ss_pred CcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC-CEEEEeccccCCC
Q 012363 215 HYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG-ALLVFDEVQCGLG 293 (465)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g-~llI~DEv~~g~g 293 (465)
......+.+++.+|++++++++++ ++++|++++.++..|.+.+ +++|.++|++|| +++|+||+|.++.
T Consensus 127 ------~~~G~~v~~v~~~d~~~l~~~i~~-~t~~v~~~~p~nptG~~~~----l~~i~~la~~~g~~~livD~~~~~~~ 195 (403)
T 3cog_A 127 ------SEFGLKISFVDCSKIKLLEAAITP-ETKLVWIETPTNPTQKVID----IEGCAHIVHKHGDIILVVDNTFMSPY 195 (403)
T ss_dssp ------GGGTCEEEEECTTSHHHHHHHCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHTSSSCCEEEEECTTTCTT
T ss_pred ------HHcCCEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCeeeC----HHHHHHHHHHcCCCEEEEECCCcccc
Confidence 011134556777799999999975 5788888877777777765 999999999999 9999999998652
Q ss_pred CCCccccccccCCcccEE--EecccCCC-c-cceeeEEeC-HHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHH
Q 012363 294 RTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL 368 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~-~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~ 368 (465)
..... +..+|++ +++|.+++ | .++|+++++ +++++.+.......+...+++.+.++..+|+.+ +...
T Consensus 196 -~~~~~-----~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l--~~r~ 267 (403)
T 3cog_A 196 -FQRPL-----ALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTL--HVRM 267 (403)
T ss_dssp -TCCTT-----TTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTH--HHHH
T ss_pred -cCCcc-----ccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHH--HHHH
Confidence 22221 2345766 68899986 4 689999985 788777754333334556888888887777643 2234
Q ss_pred HHHHHHHHHHHHHHHHH----------HHcCCCce----eeeccceEEEEEecCChHHHHHHHHHCCceEee---c----
Q 012363 369 ASVSKKGHYFKETLKQK----------LARNPHVK----DVRGLGLIIGIEFDVSATPVVDACRDSGLLVLT---A---- 427 (465)
Q Consensus 369 ~~~~~~~~~l~~~l~~~----------~~~~~~~~----~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~---~---- 427 (465)
++..++...+.+.+++. +..+|... ..++.|.++.+.+........+.|.+.|+++.. +
T Consensus 268 ~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~l~~~~i~~~~~s~G~~~s 347 (403)
T 3cog_A 268 EKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGGFES 347 (403)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCSSSSC
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCCHHHHHHHHHhCCcceEccCCCCcce
Confidence 44444444444444332 11222111 123458888888854445566667778886432 1
Q ss_pred ---------------------CC-CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012363 428 ---------------------GK-GNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 428 ---------------------~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
+. ++.+|++++...++++|+.+.+.|++++
T Consensus 348 l~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~~ 399 (403)
T 3cog_A 348 LAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAAH 399 (403)
T ss_dssp EEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHC
T ss_pred eeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 11 3689999998877777777666665543
No 191
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.90 E-value=1.2e-22 Score=202.87 Aligned_cols=241 Identities=15% Similarity=0.151 Sum_probs=167.9
Q ss_pred cccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccccc
Q 012363 132 HVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT 211 (465)
Q Consensus 132 ~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~ 211 (465)
+.+..+.++...+|+++|++..+.+.+++++||++|++.++.++. ++++|++.++.||+........+
T Consensus 59 ~~y~r~~~p~~~~l~~~la~l~g~~~~~~~~sG~~Ai~~~~~l~~------------~gd~Vi~~~~~y~~~~~~~~~~~ 126 (400)
T 3nmy_A 59 FEYSRTHNPTRFAYERCVAALEGGTRAFAFASGMAATSTVMELLD------------AGSHVVAMDDLYGGTFRLFERVR 126 (400)
T ss_dssp CCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHTTSC------------TTCEEEEESSCCHHHHHHHHHTH
T ss_pred cccccCCCHHHHHHHHHHHHHhCCCCEEEecCHHHHHHHHHHHcC------------CCCEEEEeCCCchHHHHHHHHhh
Confidence 345667888899999999999998889999999999997543222 68899999999987654332210
Q ss_pred CCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC
Q 012363 212 SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291 (465)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g 291 (465)
+......+.+++.+|++++++++++ ++++|++|+.++++|.+.+ +++|+++|++||++||+||+|..
T Consensus 127 --------~~~~g~~~~~v~~~d~~~l~~~i~~-~~~~v~~e~~~np~G~~~~----l~~i~~la~~~g~~livDe~~~~ 193 (400)
T 3nmy_A 127 --------RRTAGLDFSFVDLTDPAAFKAAIRA-DTKMVWIETPTNPMLKLVD----IAAIAVIARKHGLLTVVDNTFAS 193 (400)
T ss_dssp --------HHHHCCEEEEECTTSHHHHHHHCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTH
T ss_pred --------HhhcCeEEEEECCCCHHHHHHHhcc-CCCEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECCCcc
Confidence 0011234566778899999999975 6889999998888888775 99999999999999999999863
Q ss_pred CCCCCccccccccCCcccEEEecccCCC-ccceee--EE-eCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchH
Q 012363 292 LGRTGYLWAHEHYGIFPDIMTLAKPLAG-GLPIGA--AL-VTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAF 367 (465)
Q Consensus 292 ~gr~g~~~~~~~~~~~pdi~t~sK~lg~-G~~iG~--v~-~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~ 367 (465)
. ... ....++..+.+.+++|+++| |.++|. ++ .++++++.+.......+...+|+.+++++..++.+ +..
T Consensus 194 ~-~~~---~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~~l--~~r 267 (400)
T 3nmy_A 194 P-MLQ---RPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLKTL--PLR 267 (400)
T ss_dssp H-HHC---CGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHTTH--HHH
T ss_pred c-ccC---ChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHhHH--HHH
Confidence 1 111 11123544555578999997 566654 44 46778777754333445567888877777766543 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCceee------------------eccceEEEEEec
Q 012363 368 LASVSKKGHYFKETLKQKLARNPHVKDV------------------RGLGLIIGIEFD 407 (465)
Q Consensus 368 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~------------------~~~g~~~~i~~~ 407 (465)
.++..++...+.+. +.++|.+..+ +|.|.++++++.
T Consensus 268 ~~~~~~~a~~l~~~----L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~ 321 (400)
T 3nmy_A 268 MRAHCENALALAQW----LETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLK 321 (400)
T ss_dssp HHHHHHHHHHHHHH----HTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEET
T ss_pred HHHHHHHHHHHHHH----HHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeC
Confidence 44445555544444 4455655444 678999999994
No 192
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.90 E-value=4.2e-22 Score=195.89 Aligned_cols=300 Identities=10% Similarity=-0.027 Sum_probs=194.0
Q ss_pred CCHHHHHHHHHHHhhcccc-cCCCCC--HHHHHHHHHHHhhcC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCC
Q 012363 115 GDADWIKAVVDQANVLTHV-SNMYYS--IPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKE 188 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~-~~~~~~--~~~~~la~~l~~~~~---~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~ 188 (465)
.+|++.+++.+++...... ...++. +...++++++++.++ .++|++++||++|+..+++.+.
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~------------ 82 (362)
T 3ffr_A 15 LYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCV------------ 82 (362)
T ss_dssp CCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHC------------
T ss_pred CCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhcc------------
Confidence 5688999998887653211 111211 236778888888886 4679999999999999998665
Q ss_pred CCceEEEEcCCcccCccc-cccccCCCCcCCCCCCCCCCceEeeC-----CCHHHHHhhcCCCCeEEEEEcccCCCCCcc
Q 012363 189 PATEFVSFTNSFHGRTMG-ALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAVFVEPIQGEGGIY 262 (465)
Q Consensus 189 ~~~~ii~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~a~vi~ep~~~~~G~~ 262 (465)
.. ++++..+.+++.... .....+. .+..++. .|+++|+ +++ ++++|++++.++.+|.+
T Consensus 83 ~~-~~i~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~d~~~l~--~~~-~~~~v~~~~~~nptG~~ 146 (362)
T 3ffr_A 83 EK-KSFHCVNGSFSKRFYEFAGELGR------------EAYKEEAAFGKGFYPADIT--VPA-DAEIICLTHNETSSGVS 146 (362)
T ss_dssp SS-EEEEEECSHHHHHHHHHHHHTTC------------EEEEEECCTTCCCCGGGCC--CCT-TCCEEEEESEETTTTEE
T ss_pred CC-cEEEEcCcHHHHHHHHHHHHhCC------------CeEEEecCCCCCCCHHHHh--ccC-CccEEEEEcCCCCccee
Confidence 13 666666655553211 1111111 1112221 1678887 544 45666666666666766
Q ss_pred cCCHHHHHHHHHHHHHh-CCEEEEeccccCCCCCCccccccccCCcccEEE--ecccCCCccceeeEEeCHHHHhhccCC
Q 012363 263 SATKEFLQFLRDACDDA-GALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTEKVASAINYG 339 (465)
Q Consensus 263 ~~~~~~l~~l~~l~~~~-g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~~i~~~~~~~ 339 (465)
.+ +++|.++|++| |+++|+||+|..+... .+... .|+++ ++|+++++..+|++++++++++.+.+.
T Consensus 147 ~~----l~~i~~la~~~p~~~li~D~a~~~~~~~-----~~~~~--~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~ 215 (362)
T 3ffr_A 147 MP----VEDINTFRDKNKDALIFVDAVSSLPYPK-----FDWTK--IDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKAL 215 (362)
T ss_dssp CC----HHHHTTSGGGSTTSEEEEECTTTTTSSC-----CCTTS--CSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHH
T ss_pred CC----HHHHHHHHHhCCCCEEEEecccccCCcc-----cChhH--CcEEEEecccccCCCCceEEEEECHHHHHHhhhc
Confidence 65 89999999999 9999999998733111 11111 56664 569998544467888898887765431
Q ss_pred CC---------------------cCCCCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCceee
Q 012363 340 DH---------------------GSTFAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKDV 395 (465)
Q Consensus 340 ~~---------------------~~t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 395 (465)
.. ...++.+..++.++.++++.+.+ ++..++.+++.+++.+.| .++|.+...
T Consensus 216 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L----~~~~g~~~~ 291 (362)
T 3ffr_A 216 LAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYI----ESSKVFSFG 291 (362)
T ss_dssp HHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH----HHCSSEEES
T ss_pred cccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH----HHccCceec
Confidence 11 11345677777777788876543 234444555555555554 444433222
Q ss_pred e-----ccceEEEEEecCChHHHHHHHHHCCceEeecC---CCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012363 396 R-----GLGLIIGIEFDVSATPVVDACRDSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 396 ~-----~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~---~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
. ..+.++++.++.+..++.+.|.++||.+.++. .++++|++++...+++++++++++|++++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 292 VEDAKLRSMTTIVANTTMLPGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp SSCGGGBCSSEEEEEESSCHHHHHHHHGGGTEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred cCChhhcCCceEEEecCCCHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 1 23556777774467889999999999998752 24789999998999999999999998764
No 193
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.90 E-value=1.7e-21 Score=195.93 Aligned_cols=312 Identities=11% Similarity=0.052 Sum_probs=198.0
Q ss_pred CCHHHHHHHHHHHhhcccc---cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 012363 115 GDADWIKAVVDQANVLTHV---SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT 191 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~---~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~ 191 (465)
-+|++++++.+++++.... ...+..+...+++++++++++.+.+++++||++|+..+++.+. . .+++
T Consensus 14 ~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~~i~~~~gt~al~~~~~~~~--~--------~~gd 83 (418)
T 2c81_A 14 HSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGVPYCVPTTSGSTALMLALEALG--I--------GEGD 83 (418)
T ss_dssp CCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTT--C--------CTTC
T ss_pred CCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcC--C--------CCcC
Confidence 3689999999998764221 1112233478999999999997788899999999999999762 1 1578
Q ss_pred eEEEEcCCcccCccccccccCCCCcCCCCCCCCC-CceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 012363 192 EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP-GVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQ 270 (465)
Q Consensus 192 ~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~ 270 (465)
+|++.+++|++....+...+....+. +..+ +.. -|+++|++++++ ++++|++++ ..|...+ ++
T Consensus 84 ~Vl~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~----~d~~~l~~~i~~-~~~~v~~~~---~~G~~~~----~~ 147 (418)
T 2c81_A 84 EVIVPSLTWIATATAVLNVNALPVFV----DVEADTYC----IDPQLIKSAITD-KTKAIIPVH---LFGSMAN----MD 147 (418)
T ss_dssp EEEEESSSCTHHHHHHHHTTCEEEEE----CBCTTTCS----BCHHHHGGGCCT-TEEEECCBC---CTTCCCC----HH
T ss_pred EEEECCCccHhHHHHHHHcCCEEEEE----ecCCCCCC----cCHHHHHHhhCC-CCeEEEEeC---CcCCccc----HH
Confidence 99999999998876554333221111 1111 111 189999999975 567777543 3454443 99
Q ss_pred HHHHHHHHhCCEEEEeccccCCC-CCCccccccccCCcccEEEe--cccCCCccceeeEEeC-HHHHhhccCCC-CcC--
Q 012363 271 FLRDACDDAGALLVFDEVQCGLG-RTGYLWAHEHYGIFPDIMTL--AKPLAGGLPIGAALVT-EKVASAINYGD-HGS-- 343 (465)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~g-r~g~~~~~~~~~~~pdi~t~--sK~lg~G~~iG~v~~~-~~i~~~~~~~~-~~~-- 343 (465)
+|.++|++||++||+||+|+.+. ..+... ..++ ..++.+| +|.+++| ++|+++++ +++++.+.... .+.
T Consensus 148 ~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~-~~~~~s~s~~K~~~~g-~~g~~~~~~~~l~~~~~~~~~~~~~~ 223 (418)
T 2c81_A 148 EINEIAQEHNLFVIEDCAQSHGSVWNNQRA--GTIG-DIGAFSCQQGKVLTAG-EGGIIVTKNPRLFELIQQLRADSRVY 223 (418)
T ss_dssp HHHHHHHHTTCEEEEECTTCTTCEETTEET--TSSS-SEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHHBTTEEE
T ss_pred HHHHHHHHCCCEEEEECcccccCccCCEec--cccc-ceEEEeccCCcccCCC-CeEEEEECCHHHHHHHHHHHHhCccc
Confidence 99999999999999999998764 222211 1111 2345566 8999887 99999995 77766553210 000
Q ss_pred ---------CCC--------------ChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceee-eccc
Q 012363 344 ---------TFA--------------GSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDV-RGLG 399 (465)
Q Consensus 344 ---------t~~--------------~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g 399 (465)
.|. .+++..+.+...++.+ ++..++.+++.+++.+.| .+.+.+... ...+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~l~~~L----~~~~g~~~~~~~~~ 297 (418)
T 2c81_A 224 CDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQEL--DDKNAIREKNAMFLNDAL----SKIDGIKVMKRPPQ 297 (418)
T ss_dssp CSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHH----TTSTTEEECCCCTT
T ss_pred cccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh----ccCCCcccCCCCCC
Confidence 011 2333333322223211 334444444544444444 444433222 2222
Q ss_pred ----e--EEEEEec------CChHHHHHHHHHC-Cce---EeecCC----------------------------------
Q 012363 400 ----L--IIGIEFD------VSATPVVDACRDS-GLL---VLTAGK---------------------------------- 429 (465)
Q Consensus 400 ----~--~~~i~~~------~~~~~~~~~l~~~-Gv~---v~~~~~---------------------------------- 429 (465)
. ++.+.++ .+..++.+.|.++ ||. +.++..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (418)
T 2c81_A 298 VSRQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPV 377 (418)
T ss_dssp EEECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHH
T ss_pred CcccccEEEEEEEccccccccCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChH
Confidence 2 3335553 2567899999999 999 765310
Q ss_pred -----CCEEEEecCCCC-cHHHHHHHHHHHHHHHHHhhh
Q 012363 430 -----GNVVRLVPPLII-SEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 430 -----~~~lRi~~~~~~-t~e~i~~~l~~l~~~l~~~~~ 462 (465)
.+.+|++++..+ |++|++++++.|+++++++..
T Consensus 378 ~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~~~ 416 (418)
T 2c81_A 378 SERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKFCV 416 (418)
T ss_dssp HHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHhhcc
Confidence 147999999999 999999999999999887643
No 194
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.90 E-value=7.2e-22 Score=198.29 Aligned_cols=315 Identities=16% Similarity=0.090 Sum_probs=187.3
Q ss_pred CCHHHHHHHHHHHhh-cccccC----CCCCHH----HHHHHHHHHhhcCCCeE-EecCCHHHHHHHHHHHHHHHhhhcCC
Q 012363 115 GDADWIKAVVDQANV-LTHVSN----MYYSIP----QIELAKRLVACSFADRV-FFSNTGTEANEAAIKFARKFQRHSNP 184 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~-~~~~~~----~~~~~~----~~~la~~l~~~~~~~~v-~~~~sG~eA~~~al~~a~~~t~~~~~ 184 (465)
.+|+|++|+.+++.. ....+. ...... ...+++++++.++.+.. +++++|++|++.+++.+.
T Consensus 37 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~~sGt~a~~~~~~~~~-------- 108 (417)
T 3n0l_A 37 TLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSGSQANQGVYAALI-------- 108 (417)
T ss_dssp CCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHS--------
T ss_pred CCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcceEeccHHHHHHHHHHHhc--------
Confidence 489999999988743 211111 112222 33455578888874432 455677999999998774
Q ss_pred CCCCCCceEEEEcCCcccCcccccc--ccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcc
Q 012363 185 DSKEPATEFVSFTNSFHGRTMGALA--LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIY 262 (465)
Q Consensus 185 ~~~~~~~~ii~~~~~yhg~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~ 262 (465)
.++++|++.+++|++....... ..+... .....+...+. ..|+++|+++++..++++|++.+.+ .|..
T Consensus 109 ---~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~----~~d~~~l~~~i~~~~~~~v~~~~~~--~G~~ 178 (417)
T 3n0l_A 109 ---NPGDKILGMDLSHGGHLTHGAKVSSSGKMY-ESCFYGVELDG----RIDYEKVREIAKKEKPKLIVCGASA--YARV 178 (417)
T ss_dssp ---CTTCEEEEECC----------------CCS-EEEEECCCTTS----SCCHHHHHHHHHHHCCSEEEECCSS--CCSC
T ss_pred ---CCCCEEEecccccccccchhhhhhhhccee-eeEeccCCCCC----CcCHHHHHHHHHhcCCeEEEECCcc--cCcc
Confidence 2689999999999876432111 111000 00000000000 1389999999973345666654433 3555
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEecccc-CCCCCCccccccccCCcccEEEe--cccCCCccceeeEEeC-HHHHhhccC
Q 012363 263 SATKEFLQFLRDACDDAGALLVFDEVQC-GLGRTGYLWAHEHYGIFPDIMTL--AKPLAGGLPIGAALVT-EKVASAINY 338 (465)
Q Consensus 263 ~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~gr~g~~~~~~~~~~~pdi~t~--sK~lg~G~~iG~v~~~-~~i~~~~~~ 338 (465)
.+ +++|+++|++||++||+||+|. |+...|.... ... ..|++++ ||++ +|+++|+++++ +++++.+..
T Consensus 179 ~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~-~~di~~~s~sK~l-~g~~~G~~~~~~~~~~~~~~~ 250 (417)
T 3n0l_A 179 ID----FAKFREIADEIGAYLFADIAHIAGLVVAGEHPS--PFP-YAHVVSSTTHKTL-RGPRGGIIMTNDEELAKKINS 250 (417)
T ss_dssp CC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC--CTT-TCSEEEEESSTTT-CSCSCEEEEESCHHHHHHHHH
T ss_pred CC----HHHHHHHHHHcCCEEEEECccchhhhhcccCCC--ccc-cceEEEeeCcccc-CCCCeeEEEECCHHHHHHHhh
Confidence 54 9999999999999999999964 3211221100 001 2467755 5999 56678999998 788877754
Q ss_pred C-CCcCCCCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCceeee--ccceEEEEEec---CC
Q 012363 339 G-DHGSTFAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKDVR--GLGLIIGIEFD---VS 409 (465)
Q Consensus 339 ~-~~~~t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~g~~~~i~~~---~~ 409 (465)
. .++.+.+.++..+++..+++....+ +++.+++.++.+++.+.|.+ .+ +.... ..+.++++.+. ..
T Consensus 251 ~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g-~~~~~~~~~~~~~~~~~~~~~~~ 325 (417)
T 3n0l_A 251 AIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMD----RK-FKLVSDGTDNHLVLMSFLDREFS 325 (417)
T ss_dssp HHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH----TT-CEEGGGSCSSSEEEEECTTSSSC
T ss_pred hhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh----CC-ceeccCCCCceEEEEEcccCCCC
Confidence 3 2223334456666666666765332 34555566666666666655 22 11111 33557777773 25
Q ss_pred hHHHHHHHHHCCceEeecCC---------CCEEEEecCC----CCcHHHHHHHHHHHHHHHHHh
Q 012363 410 ATPVVDACRDSGLLVLTAGK---------GNVVRLVPPL----IISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 410 ~~~~~~~l~~~Gv~v~~~~~---------~~~lRi~~~~----~~t~e~i~~~l~~l~~~l~~~ 460 (465)
...+.+.|.++||.+.+... ...+|+.++. .++++++++++++|++++++.
T Consensus 326 ~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 389 (417)
T 3n0l_A 326 GKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDV 389 (417)
T ss_dssp HHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 67788888899999875421 2568997653 357899999999999998754
No 195
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.89 E-value=3.7e-22 Score=199.27 Aligned_cols=306 Identities=10% Similarity=0.095 Sum_probs=198.0
Q ss_pred CHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEE
Q 012363 116 DADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195 (465)
Q Consensus 116 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~ 195 (465)
+|++.+++.+.+... +. . ...+...++++.++++++.+++++++||++|+..+++.+. . .++++|++
T Consensus 11 ~~~v~~a~~~~~~~~-~~-~-~~g~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~l~--~--------~~gd~Vl~ 77 (394)
T 1o69_A 11 GGNELKYIEEVFKSN-YI-A-PLGEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAG--V--------KQDDIVLA 77 (394)
T ss_dssp -CCHHHHHHHHHHHT-TT-S-CTTHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTT--C--------CTTCEEEE
T ss_pred CHHHHHHHHHHHHcC-Cc-c-CCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcC--C--------CCCCEEEE
Confidence 367888888887652 11 1 1124578999999999998999999999999999999762 1 15889999
Q ss_pred EcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCC--CeEEEEEcccCCCCCcccCCHHHHHHHH
Q 012363 196 FTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG--KTAAVFVEPIQGEGGIYSATKEFLQFLR 273 (465)
Q Consensus 196 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~a~vi~ep~~~~~G~~~~~~~~l~~l~ 273 (465)
.+++|++....+...+....+. +...+.. .|+++|++++++. ++++|++++. .|...+ +++|.
T Consensus 78 ~~~~~~~~~~~~~~~g~~~~~v----~~~~~~~----~d~~~l~~~i~~~~~~~~~v~~~~~---~G~~~~----l~~i~ 142 (394)
T 1o69_A 78 SSFTFIASVAPICYLKAKPVFI----DCDETYN----IDVDLLKLAIKECEKKPKALILTHL---YGNAAK----MDEIV 142 (394)
T ss_dssp ESSSCGGGTHHHHHTTCEEEEE----CBCTTSS----BCHHHHHHHHHHCSSCCCEEEEECG---GGCCCC----HHHHH
T ss_pred CCCccHHHHHHHHHcCCEEEEE----EeCCCCC----cCHHHHHHHHhcccCCceEEEEECC---CCChhh----HHHHH
Confidence 9999999876554433221111 1111111 2889999988632 4677777762 343333 99999
Q ss_pred HHHHHhCCEEEEecccc-CCCCCCccccccccCCcccEEEec--ccCCCccceeeEEeC-HHHHhhccCCCC-c------
Q 012363 274 DACDDAGALLVFDEVQC-GLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVT-EKVASAINYGDH-G------ 342 (465)
Q Consensus 274 ~l~~~~g~llI~DEv~~-g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~-~~i~~~~~~~~~-~------ 342 (465)
++|++||++||+||+|+ |+.+.|... ..++ .+|+.++| |.++ |.++|+++++ +++++.+..... .
T Consensus 143 ~l~~~~~~~li~Dea~~~g~~~~~~~~--~~~~-~~~~~s~s~~K~l~-~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~ 218 (394)
T 1o69_A 143 EICKENDIVLIEDAAEALGSFYKNKAL--GTFG-EFGVYSYNGNKIIT-TSGGGMLIGKNKEKIEKARFYSTQARENCLH 218 (394)
T ss_dssp HHHHHTTCEEEEECTTCTTCEETTEET--TSSS-SEEEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHTBTCCCSSSS
T ss_pred HHHHHcCCEEEEECcCcccceeCCccc--cccc-CcEEEEEeCCccCC-CCCceEEEECCHHHHHHHHHHHHhccccCcc
Confidence 99999999999999998 654444311 0111 36888885 6665 4689999995 787776642111 0
Q ss_pred -------CCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeec-cce--EEEEEecC----
Q 012363 343 -------STFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRG-LGL--IIGIEFDV---- 408 (465)
Q Consensus 343 -------~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~g~--~~~i~~~~---- 408 (465)
..+..+++.++++++.++.+ ++..++.+++.+++++.|.++ -... ..... .+. ++++.++.
T Consensus 219 ~~~~~~g~~~~~~~~~aa~~l~~l~~l--~~~~~~~~~~~~~l~~~L~~~-~~~~--~~~~~~~~~~~~~~i~~~~~~~~ 293 (394)
T 1o69_A 219 YEHLDYGYNYRLSNVLGAIGVAQMEVL--EQRVLKKREIYEWYKEFLGEY-FSFL--DELENSRSNRWLSTALINFDKNE 293 (394)
T ss_dssp CCCSSCCCBCBCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTT-EECC--CCCTTEECCCSSEEEEESCCGGG
T ss_pred ccccccCcccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccc-cccc--CCCCCCcceeEEEEEEecchhhc
Confidence 11114566666665555433 335677777777777777654 1111 11100 122 35565531
Q ss_pred -------------------ChHHHHHHHHHCCceEeecCCC-----------------------CEEEEecCCCCcHHHH
Q 012363 409 -------------------SATPVVDACRDSGLLVLTAGKG-----------------------NVVRLVPPLIISEQEL 446 (465)
Q Consensus 409 -------------------~~~~~~~~l~~~Gv~v~~~~~~-----------------------~~lRi~~~~~~t~e~i 446 (465)
+..++.+.|.++||.+.++... ..+++..+..+|++|+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi 373 (394)
T 1o69_A 294 LNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDV 373 (394)
T ss_dssp SCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHH
T ss_pred cccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHH
Confidence 3567899999999998765210 2345545667899999
Q ss_pred HHHHHHHHHHHH
Q 012363 447 DQAVEILCKTLP 458 (465)
Q Consensus 447 ~~~l~~l~~~l~ 458 (465)
++++++|+++++
T Consensus 374 ~~~~~~l~~~~~ 385 (394)
T 1o69_A 374 YEISKLILKSIK 385 (394)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 196
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.89 E-value=3.3e-22 Score=199.99 Aligned_cols=323 Identities=11% Similarity=0.026 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhc-C----C--CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 012363 117 ADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-F----A--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEP 189 (465)
Q Consensus 117 p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~-~----~--~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~ 189 (465)
|.|++|..+.++.... ..+.+.....+|.+.+++++ + . ....-|.||+.|+..++..+..... ++
T Consensus 65 ~~Vk~A~~~~~~~~~~-~~Y~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~-------~p 136 (420)
T 4h51_A 65 RVVRKAEQLLLDMNLD-YEYLPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFD-------AE 136 (420)
T ss_dssp HHHHHHHHHHHHTTCC-CCCCCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSC-------TT
T ss_pred HHHHHHHHHHhcCCCC-CCCCCcCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcC-------CC
Confidence 7788887776654321 11222222344555554432 2 2 2345589999999888876653321 26
Q ss_pred CceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcC--CCCeEEEEEcc-cCCCCCcccCCH
Q 012363 190 ATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEP-IQGEGGIYSATK 266 (465)
Q Consensus 190 ~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~--~~~~a~vi~ep-~~~~~G~~~~~~ 266 (465)
++.|++.+|+|..+...+...++......++. .++... .|.+.+.+.+. ..+..++++.+ .||+| ..+++
T Consensus 137 gd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~--~~~~~~---~d~~~~~~~l~~~~~~~~vll~~~p~NPtG--~~~~~ 209 (420)
T 4h51_A 137 TTPIYLSDPTWPNHYGVVKAAGWKNICTYAYY--DPKTVS---LNFEGMKKDILAAPDGSVFILHQCAHNPTG--VDPSQ 209 (420)
T ss_dssp TSCEEEEESCCTHHHHHHHHTTCCCEEEEECE--EGGGTE---ECHHHHHHHHHHSCSSCEEEEESSSCTTTC--CCCCH
T ss_pred CCEEEEecCCchhHHHHHHHcCCeEEEeeccc--cccccC---CCHHHHHHHHhccCCCcEEEEeCCCCCCCC--CCCCH
Confidence 89999999999877655554443322110000 001001 15666666654 23344555444 44444 45799
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCCCCCCc---cccc----cccCCcccEEEecccCCC-ccceeeEEeCHHHHhh---
Q 012363 267 EFLQFLRDACDDAGALLVFDEVQCGLGRTGY---LWAH----EHYGIFPDIMTLAKPLAG-GLPIGAALVTEKVASA--- 335 (465)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~---~~~~----~~~~~~pdi~t~sK~lg~-G~~iG~v~~~~~i~~~--- 335 (465)
+.+++|.++|+++++++|+||+|.+|...+. .+.. +......-+.+|||.++. |+|+||+++..+..+.
T Consensus 210 ~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~ 289 (420)
T 4h51_A 210 EQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRAD 289 (420)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHH
T ss_pred HHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEEEecccCHHHHHH
Confidence 9999999999999999999999999965432 1111 111112233489999996 9999999875432222
Q ss_pred ----ccCCCCcCCCCChHHHHHHHHHHHHHhc-C---chHHHHHHHHHHHHHHHHHHHHHcCCC---ce-eeeccceEEE
Q 012363 336 ----INYGDHGSTFAGSPLVCNAAIAVLDKIS-N---PAFLASVSKKGHYFKETLKQKLARNPH---VK-DVRGLGLIIG 403 (465)
Q Consensus 336 ----~~~~~~~~t~~~~~~~~~aa~a~L~~~~-~---~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~-~~~~~g~~~~ 403 (465)
+.........+.+..++.++...|..-. . .+.++.++++....|+.|.+.+.+.+. +. ..+..|+|.+
T Consensus 290 ~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~~ 369 (420)
T 4h51_A 290 VKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEHVINQIGMFSF 369 (420)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCCSSEEE
T ss_pred HHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCceEEe
Confidence 1111122333455566666666664210 0 111222222333333333333333321 11 1345577766
Q ss_pred EEecCChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhhc
Q 012363 404 IEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 404 i~~~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
+.+ + .+.++.|.++||++.+++ ||+++ ..+++.|+.++++|.++++++.++
T Consensus 370 ~gl--s-~e~v~~L~e~~Vy~~~~g-----Ris~A-gl~~~ni~~~a~aI~~vvr~i~re 420 (420)
T 4h51_A 370 LGL--S-KAQCEYCQNHNIFITVSG-----RANMA-GLTHETALMLAQTINDAVRNVNRE 420 (420)
T ss_dssp CCC--C-HHHHHHHHHTTEECCTTC-----EEEGG-GCCHHHHHHHHHHHHHHHC-----
T ss_pred cCc--C-HHHHHHHHhCCEEEcCCC-----EEEec-cCCHHHHHHHHHHHHHHHHHhhcC
Confidence 544 2 345678889999988754 88765 358899999999999999988764
No 197
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.89 E-value=4.1e-22 Score=198.78 Aligned_cols=284 Identities=15% Similarity=0.128 Sum_probs=189.5
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012363 134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 134 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
+..+.++...+++++|+++++.+.+++++||++|+..+++ +. .++++||+.++.||+........
T Consensus 49 ~~~~~~~~~~~lr~~la~~~g~~~~i~~~sGt~a~~~al~-~~-----------~~gd~Vi~~~~~y~~~~~~~~~~--- 113 (393)
T 1n8p_A 49 YSRSQNPNRENLERAVAALENAQYGLAFSSGSATTATILQ-SL-----------PQGSHAVSIGDVYGGTHRYFTKV--- 113 (393)
T ss_dssp BTTTCCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHH-TS-----------CSSCEEEEESSCCHHHHHHHHHT---
T ss_pred eecCCChhHHHHHHHHHHHhCCCcEEEECChHHHHHHHHH-Hc-----------CCCCEEEEeCCCchHHHHHHHHH---
Confidence 3456677788999999999987788888899999999998 43 15789999999998754321000
Q ss_pred CCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh----CCEEEEeccc
Q 012363 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDA----GALLVFDEVQ 289 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~----g~llI~DEv~ 289 (465)
.......+.++|.+| ++|++++++ ++++|++++.++++|.+.+ +++|.++|++| |+++|+||+|
T Consensus 114 ------~~~~G~~v~~v~~~d-~~l~~~i~~-~t~lv~~~~~~nptG~~~~----l~~i~~la~~~~~~~~~~livD~a~ 181 (393)
T 1n8p_A 114 ------ANAHGVETSFTNDLL-NDLPQLIKE-NTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQDVILVVDNTF 181 (393)
T ss_dssp ------STTTCSCCEEESSHH-HHHHHHSCS-SEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEECTT
T ss_pred ------HHHcCcEEEEeCCCh-HHHHHhccc-CceEEEEECCCCCcceecC----HHHHHHHHHHhCCCCCCEEEEeCCc
Confidence 011223456677668 999999975 6888888888888888775 99999999999 9999999999
Q ss_pred cCCCCCCccccccccCCcccEE--EecccCCC-ccce-eeEEeC-HHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcC
Q 012363 290 CGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPI-GAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN 364 (465)
Q Consensus 290 ~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~-G~~i-G~v~~~-~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~ 364 (465)
+.+.+ .... .++ +|++ +++|.+++ |+|+ |+++++ +++++.+...........+++.++++..+++.+
T Consensus 182 ~~~~~-~~~~---~~~--~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~-- 253 (393)
T 1n8p_A 182 LSPYI-SNPL---NFG--ADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKTL-- 253 (393)
T ss_dssp THHHH-CCGG---GGT--CSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTH--
T ss_pred ccccc-CCHH---HcC--CeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccchH--
Confidence 86533 2221 123 5665 68899996 7899 999885 788877754322112234677777666666532
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHcCCC-cee------------------eec-c-ceEEEEEecCC---hHHHHHHHHHC
Q 012363 365 PAFLASVSKKGHYFKETLKQKLARNPH-VKD------------------VRG-L-GLIIGIEFDVS---ATPVVDACRDS 420 (465)
Q Consensus 365 ~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~------------------~~~-~-g~~~~i~~~~~---~~~~~~~l~~~ 420 (465)
+...++..++.+.+.+.|++ ++. +.. .++ . |.++++.++.. ...+...|...
T Consensus 254 ~~~~~~~~~~~~~l~~~L~~----~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~l~~l~~~ 329 (393)
T 1n8p_A 254 HLRVRQAALSANKIAEFLAA----DKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLF 329 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHTS----CTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHh----CCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHHHhhCCcc
Confidence 22334444555555554433 322 111 123 5 78899998533 23344444322
Q ss_pred CceEe----------e---c------------C-CCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012363 421 GLLVL----------T---A------------G-KGNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 421 Gv~v~----------~---~------------~-~~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
++.+. | . + ..+.+|++++...++++++.+.++|+++
T Consensus 330 ~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 330 TLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp EECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred eECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 32221 1 0 1 1368999999999999999988888754
No 198
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.89 E-value=9e-22 Score=198.58 Aligned_cols=288 Identities=16% Similarity=0.159 Sum_probs=190.5
Q ss_pred cccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccccc
Q 012363 132 HVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT 211 (465)
Q Consensus 132 ~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~ 211 (465)
+.+..+.++...+++++|+++++.+..++++||++|+..+++.+.. ++++||+.++.|++.........
T Consensus 106 ~~y~r~~~~~~~~l~~~lA~l~g~~~~v~~~sG~~Ai~~al~~l~~-----------~Gd~Vi~~~~~y~~~~~~~~~~~ 174 (445)
T 1qgn_A 106 FEYGRYGNPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALVP-----------AGGHIVTTTDCYRKTRIFIETIL 174 (445)
T ss_dssp CCBGGGCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHSC-----------SSCEEEEETTSCHHHHHHHHHTG
T ss_pred ccccCCCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhC-----------CCCEEEEcCCCchhHHHHHHHHH
Confidence 3345567788899999999999866778888899999999986541 58899999999987543211000
Q ss_pred CCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC
Q 012363 212 SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291 (465)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g 291 (465)
......+.+++.+|+++|+++++++++++|++++.++.+|.+.+ +++|.++|++||++||+||+|..
T Consensus 175 ---------~~~G~~v~~v~~~d~~~l~~ai~~~tv~lV~le~p~NptG~v~d----l~~I~~la~~~g~~livD~a~~~ 241 (445)
T 1qgn_A 175 ---------PKMGITATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALVCIDGTFAT 241 (445)
T ss_dssp ---------GGGTCEEEEECSSCHHHHHHHHHHSCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTC
T ss_pred ---------HHcCCEEEEeCCCCHHHHHHHhccCCCCEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCcc
Confidence 01123456677789999999997544388888888777787765 89999999999999999999974
Q ss_pred CCCCCccccccccCCcccEEE--ecccCCC-c-cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchH
Q 012363 292 LGRTGYLWAHEHYGIFPDIMT--LAKPLAG-G-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAF 367 (465)
Q Consensus 292 ~gr~g~~~~~~~~~~~pdi~t--~sK~lg~-G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~ 367 (465)
+ ... ......+|+++ ++|.+++ | .++|++++++++++.+...........+++.+.++...++.+ ...
T Consensus 242 ~-~~~-----~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~~l--~~r 313 (445)
T 1qgn_A 242 P-LNQ-----KALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTL--HLR 313 (445)
T ss_dssp T-TTC-----CTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGGH--HHH
T ss_pred c-ccC-----CccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHHHHHhCCCCCHHHHHHHHHhHHHH--HHH
Confidence 3 111 12234578875 7799986 4 589999999998887753211111224666666655555433 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcee------------------eeccceEEEEEecCC---hHHHHHHHHHCCceEee
Q 012363 368 LASVSKKGHYFKETLKQKLARNPHVKD------------------VRGLGLIIGIEFDVS---ATPVVDACRDSGLLVLT 426 (465)
Q Consensus 368 ~~~~~~~~~~l~~~l~~~~~~~~~~~~------------------~~~~g~~~~i~~~~~---~~~~~~~l~~~Gv~v~~ 426 (465)
.++..++.+++.+.|+ ++|.+.. .++.|.++++.+... ...+.+.|...++.+..
T Consensus 314 ~~~~~~~a~~l~~~L~----~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~l~~~~i~~s~ 389 (445)
T 1qgn_A 314 VQQQNSTALRMAEILE----AHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSF 389 (445)
T ss_dssp HHHHHHHHHHHHHHHH----TCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCC
T ss_pred HHHHHHHHHHHHHHHh----cCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHhCCCceEeccC
Confidence 3344444555555444 4443211 134688999998533 33445444322332211
Q ss_pred c-------------------------CC-CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012363 427 A-------------------------GK-GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 427 ~-------------------------~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
+ +. ++.+|+++. .||++++++.|+++++.
T Consensus 390 G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 390 GGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG----VEDFDDLKADILQALDS 444 (445)
T ss_dssp CSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC----SSCHHHHHHHHHHHHHH
T ss_pred CCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHhh
Confidence 1 11 368999876 45799999999998864
No 199
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.88 E-value=1.2e-20 Score=194.19 Aligned_cols=337 Identities=10% Similarity=0.029 Sum_probs=199.5
Q ss_pred CCCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCH----HHHHHHHHHHhhcCC---CeEEecCCHHHH
Q 012363 95 AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI----PQIELAKRLVACSFA---DRVFFSNTGTEA 167 (465)
Q Consensus 95 ~dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~----~~~~la~~l~~~~~~---~~v~~~~sG~eA 167 (465)
..+..|+|+..+ ++.+|.+.+++....... +.......+ .+.+++++|++.++. +.++||+||++|
T Consensus 98 ~~~~~yl~~~~~------~~~~~~v~~~~~~~~~n~-~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a 170 (497)
T 2qma_A 98 TQHPDCIAHLHT------PPLMPAVAAEAMIAALNQ-SMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQS 170 (497)
T ss_dssp TTSTTBCSSSCC------CCBHHHHHHHHHHHHHCC-CTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHH
T ss_pred CCCCCeeEeCCC------CCcHHHHHHHHHHHhhcc-cccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHH
Confidence 356678887664 346788888876654321 111111122 245567778988873 789999999999
Q ss_pred HHHHHHHHHHHhhh---------cCCCCCCC--Cc-eEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCC--
Q 012363 168 NEAAIKFARKFQRH---------SNPDSKEP--AT-EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-- 233 (465)
Q Consensus 168 ~~~al~~a~~~t~~---------~~~~~~~~--~~-~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 233 (465)
+..++++++.+... .+. ++ ++ .|++.++.+ .....+....+... ..+..+|.+
T Consensus 171 ~~~al~~ar~~~~~~~~~~~~~~~G~---~~~~g~~~v~~s~~~h-~s~~~~~~~~g~g~---------~~v~~v~~~~~ 237 (497)
T 2qma_A 171 NQMGLMLARDWIADKLSGHSIQKLGL---PDYADKLRIVCSKKSH-FTVQKSASWMGLGE---------KAVMTVDANAD 237 (497)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHCS---CGGGGGEEEEEETTSC-THHHHHHHHTTSCG---------GGEEEECBCTT
T ss_pred HHHHHHHHHHHHHHhhcccchhhccc---ccccCCeEEEECCCch-HHHHHHHHHcCCCc---------ccEEEEecCCC
Confidence 99999998653210 000 00 24 455555444 43333322221100 022333333
Q ss_pred ---CHHHHHhhcCCC----C-eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccC
Q 012363 234 ---NIEATRKLIQPG----K-TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYG 305 (465)
Q Consensus 234 ---d~~~le~~l~~~----~-~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~ 305 (465)
|+++|+++|+++ . +.+|++...++..|.+.+ +++|.++|++||++||+|++|.++..... +.....+
T Consensus 238 ~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~----l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~g 312 (497)
T 2qma_A 238 GTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD----LDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLKG 312 (497)
T ss_dssp SSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGTT
T ss_pred CcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhcC
Confidence 789999988632 2 335665554555566655 99999999999999999999987654333 2222335
Q ss_pred C-cccEEEe--cccCCCccceeeEEeCHH-HHhhccCCC----CcCCCCChHHHH----------HHHHHHHHHhcCc--
Q 012363 306 I-FPDIMTL--AKPLAGGLPIGAALVTEK-VASAINYGD----HGSTFAGSPLVC----------NAAIAVLDKISNP-- 365 (465)
Q Consensus 306 ~-~pdi~t~--sK~lg~G~~iG~v~~~~~-i~~~~~~~~----~~~t~~~~~~~~----------~aa~a~L~~~~~~-- 365 (465)
+ .+|++++ +|++++++++|+++++++ .++.+.... ...+...++... .+..++++.+..+
T Consensus 313 i~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~ 392 (497)
T 2qma_A 313 VERAHSISVDFHKLFYQTISCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKAL 392 (497)
T ss_dssp GGGCSEEEEETTTTTCCCSSCEEEEESCGGGGGGGCC--------------------CCSCCCTHHHHHHHHHHTCHHHH
T ss_pred cccCCEEEEcchhccCCCcceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHH
Confidence 5 6788876 799988889999998754 345443210 001101122211 1233455555333
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHcCCCcee-eeccceEEEEEecCC-------hHHHHHHHHHCCceEeecC---CCCEE
Q 012363 366 -AFLASVSKKGHYFKETLKQKLARNPHVKD-VRGLGLIIGIEFDVS-------ATPVVDACRDSGLLVLTAG---KGNVV 433 (465)
Q Consensus 366 -~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~g~~~~i~~~~~-------~~~~~~~l~~~Gv~v~~~~---~~~~l 433 (465)
++.++..++.+++.+.| .+.+.+.. .+..+.++.+.+... ..++.+.|.++|+.+.+.. ...++
T Consensus 393 ~~~~~~~~~~a~~l~~~L----~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~l~~~l~~~G~~~~~~~~~~g~~~l 468 (497)
T 2qma_A 393 GDMYDHLLAQTLEVADMI----RTNDQFELLAEPSLSTVLFRATHETADLDELNKALRLEALTRGIAVLGETIVDGKTAL 468 (497)
T ss_dssp HHHHHHHHHHHHHHHHHH----HTCTTEEECSCCSSSEEEEEECCSSSCHHHHHHHHHHHHHHHTSCBCEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHH----hhCCCeEEEcCCCceEEEEEEcCCccCHHHHHHHHHHHHHhCCCEEEEeeEECCEEEE
Confidence 34444555555555554 44443322 134456777776321 2357778889999886431 12579
Q ss_pred EEec-CCCCcHHHHHHHHHHHHHHHHHh
Q 012363 434 RLVP-PLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 434 Ri~~-~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
|+++ +..+|++|+++++++|+++++++
T Consensus 469 Ris~~~~~~t~edi~~~~~~l~~~~~~~ 496 (497)
T 2qma_A 469 KFTILNPCLTTSDFESLLSKINMLAVEL 496 (497)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 9997 88999999999999999988764
No 200
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.88 E-value=1.4e-20 Score=190.43 Aligned_cols=326 Identities=16% Similarity=0.101 Sum_probs=202.5
Q ss_pred CCCEEEecccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHH
Q 012363 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFA 175 (465)
Q Consensus 96 dG~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a 175 (465)
+|+.+|.|.... -+|++.+++.+++.... .++.+...++++.++++++.+.+++++||++|+..+++.+
T Consensus 29 ~~~~~i~~~~~~-------~~~~~~~a~~~~~~~~~----~~~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~al~~l 97 (437)
T 3bb8_A 29 AGKSVVPPSGKV-------IGTKELQLMVEASLDGW----LTTGRFNDAFEKKLGEYLGVPYVLTTTSGSSANLLALTAL 97 (437)
T ss_dssp TTTSCBCSCCCC-------CCHHHHHHHHHHHHHCC----CBSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHT
T ss_pred CCCccccCCCCC-------CCHHHHHHHHHHHHcCC----cCCChHHHHHHHHHHHHHCCCcEEEeCCHHHHHHHHHHHh
Confidence 356666664321 24889999999887532 3445678899999999999778999999999999999876
Q ss_pred HHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCC-CceEeeCCCHHHHHhhcCCCCeEEEEEcc
Q 012363 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP-GVNFVEYGNIEATRKLIQPGKTAAVFVEP 254 (465)
Q Consensus 176 ~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~a~vi~ep 254 (465)
..+.-... ...++++|++..++|++....+...+....+. +..+ +... |+++|++++++ ++++|++..
T Consensus 98 ~~~~~~~~--~~~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~v----~~~~~~~~~----d~~~l~~~i~~-~~~~v~~~~ 166 (437)
T 3bb8_A 98 TSPKLGVR--ALKPGDEVITVAAGFPTTVNPTIQNGLIPVFV----DVDIPTYNV----NASLIEAAVSD-KTKAIMIAH 166 (437)
T ss_dssp TCGGGGGG--SCCTTCEEEECSSSCHHHHHHHHHTTCEEEEC----CEETTTTEE----CGGGHHHHCCT-TEEEEEEEC
T ss_pred hhcccccc--cCCCcCEEEECCCCcHHHHHHHHHcCCEEEEE----eccCccCCc----CHHHHHHhcCC-CCeEEEEeC
Confidence 21000000 00157899999999998876554433222111 1111 1111 78999999975 466666643
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CCCCCCccccccccCCcccEEE--ec--ccCCCccceeeEEeC
Q 012363 255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-GLGRTGYLWAHEHYGIFPDIMT--LA--KPLAGGLPIGAALVT 329 (465)
Q Consensus 255 ~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~gr~g~~~~~~~~~~~pdi~t--~s--K~lg~G~~iG~v~~~ 329 (465)
.. |...+ +++|.++|++||++||+||+|+ |....+ ...+..+|+++ |+ |.++ |.++|+++++
T Consensus 167 ~~---g~~~~----~~~i~~l~~~~~~~li~D~a~~~g~~~~~-----~~~~~~~d~~~~s~~~~k~l~-~g~gg~~~~~ 233 (437)
T 3bb8_A 167 TL---GNLFD----LAEVRRVADKYNLWLIEDCCDALGSTYDG-----KMAGTFGDIGTVSFYPAKHIT-MGEGGAVFTQ 233 (437)
T ss_dssp GG---GCCCC----HHHHHHHHHHHTCEEEEECTTCTTCEETT-----EETTSSSSEEEEECSTTSSSC-CSSCEEEEES
T ss_pred CC---CChhc----HHHHHHHHHHcCCEEEEECccccCceECC-----eecccccCEEEEECcCCcCCC-CCCeEEEEeC
Confidence 22 22223 9999999999999999999998 321111 22343467754 44 5553 4578999998
Q ss_pred HHHHhh----ccCCC------------------------------------CcCCCCChHHHHHHHHHHHHHhcCchHHH
Q 012363 330 EKVASA----INYGD------------------------------------HGSTFAGSPLVCNAAIAVLDKISNPAFLA 369 (465)
Q Consensus 330 ~~i~~~----~~~~~------------------------------------~~~t~~~~~~~~~aa~a~L~~~~~~~~~~ 369 (465)
++.+.. +.... .+..+..+++.++++++.|+.+ ++..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~~--~~~~~ 311 (437)
T 3bb8_A 234 SAELKSIIESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGLAQLERI--EEFVE 311 (437)
T ss_dssp CHHHHHHHHHHHBTTBCC----------------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHHHHHHHHH--HHHHH
T ss_pred CHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccCcccCCCHHHHHHHHHHHHHH--HHHHH
Confidence 554332 11100 1112234688888888888754 44555
Q ss_pred HHHHHHHHHHHHHHHHHH--cCCCce--eeeccceEE-EEEec--CChHHHHHHHHHCCceEeecCC-------------
Q 012363 370 SVSKKGHYFKETLKQKLA--RNPHVK--DVRGLGLII-GIEFD--VSATPVVDACRDSGLLVLTAGK------------- 429 (465)
Q Consensus 370 ~~~~~~~~l~~~l~~~~~--~~~~~~--~~~~~g~~~-~i~~~--~~~~~~~~~l~~~Gv~v~~~~~------------- 429 (465)
+.+++.+++++.|.++.. .++... ..++...+. .+..+ .+..++.+.|.++||.++++..
T Consensus 312 ~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~GI~v~~~~~~~~~~~p~~~~~~ 391 (437)
T 3bb8_A 312 KRKANFKYLKDALQSCADFIELPEATENSDPSWFGFPITLKEDSGVSRIDLVKFLDEAKVGTRLLFAGNLTRQPYFHDVK 391 (437)
T ss_dssp HHHHHHHHHHHHGGGGTTTEECCCCCTTEECCCSSEEEEECGGGSSCHHHHHHHHHHTTBCCBCCTTSSGGGSGGGSSCC
T ss_pred HHHHHHHHHHHHhhccCCccccCCCCCCCceeeEEEEEEECCcCcCcHHHHHHHHHHCCCceeccCCcccccCchhhccC
Confidence 556666666666654310 011000 001111222 23321 3677899999999999875421
Q ss_pred --------------CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 012363 430 --------------GNVVRLVPPLIISEQELDQAVEILCKTLP 458 (465)
Q Consensus 430 --------------~~~lRi~~~~~~t~e~i~~~l~~l~~~l~ 458 (465)
.+.+|+.++..+|++|++++++.|+++++
T Consensus 392 ~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~i~~~l~~~~~ 434 (437)
T 3bb8_A 392 YRVVGELTNTDRIMNQTFWIGIYPGLTHDHLDYVVSKFEEFFG 434 (437)
T ss_dssp CEECSCCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHTT
T ss_pred ccccCCCcHHHHHhcCEEEecCCCCCCHHHHHHHHHHHHHHHc
Confidence 01489998899999999999999988753
No 201
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.87 E-value=2.3e-20 Score=187.87 Aligned_cols=168 Identities=21% Similarity=0.149 Sum_probs=128.2
Q ss_pred cccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccccc
Q 012363 132 HVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT 211 (465)
Q Consensus 132 ~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~ 211 (465)
+.+..+.++...+++++|+++++.+..++++||++|+..+++.+. .++++||+.+++||+.........
T Consensus 50 ~~y~~~~~~~~~~l~~~la~~~g~~~~v~~~sGt~A~~~~l~~~~-----------~~gd~vi~~~~~~~~~~~~~~~~~ 118 (421)
T 2ctz_A 50 NIYSRIMNPTVDVLEKRLAALEGGKAALATASGHAAQFLALTTLA-----------QAGDNIVSTPNLYGGTFNQFKVTL 118 (421)
T ss_dssp GSCBTTBCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEEECSCCCHHHHHHHHTHH
T ss_pred CcccCCCChHHHHHHHHHHHHhCCCceEEecCHHHHHHHHHHHHh-----------CCCCEEEEeCCCchHHHHHHHHHH
Confidence 334455667789999999999987677888889999999998763 158899999999998765442110
Q ss_pred CCCCcCCCCCCCCCCceEe-eCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc
Q 012363 212 SKEHYRSPFEPVMPGVNFV-EYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC 290 (465)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~-~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~ 290 (465)
. .....+.++ +.+|++++++++++ ++++|++++.++.+|.+.+ +++|+++|++||+++|+||+|+
T Consensus 119 ~---------~~g~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~n~~G~~~~----l~~i~~~a~~~g~~livD~~~~ 184 (421)
T 2ctz_A 119 K---------RLGIEVRFTSREERPEEFLALTDE-KTRAWWVESIGNPALNIPD----LEALAQAAREKGVALIVDNTFG 184 (421)
T ss_dssp H---------HTTCEEEECCTTCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGGG
T ss_pred H---------HcCCEEEEECCCCCHHHHHHhhcc-CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCcc
Confidence 0 011234456 66699999999975 6889999998888888766 9999999999999999999996
Q ss_pred CCCCCCccccccccCCcccEE--EecccCCC-ccceeeEEeC
Q 012363 291 GLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPIGAALVT 329 (465)
Q Consensus 291 g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~-G~~iG~v~~~ 329 (465)
++|..+..+ +..+|++ +++|++++ |.|+|++++.
T Consensus 185 ~~g~~~~~~-----~~~~Di~~~s~~K~l~~~g~~~G~~~~~ 221 (421)
T 2ctz_A 185 MGGYLLRPL-----AWGAALVTHSLTKWVGGHGAVIAGAIVD 221 (421)
T ss_dssp GGGTSCCGG-----GGTCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred cccccCCcc-----ccCCeEEEECCcccccCCCCcEEEEEEe
Confidence 566544332 2347877 68899997 7899888774
No 202
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.87 E-value=7.9e-20 Score=182.01 Aligned_cols=305 Identities=14% Similarity=0.136 Sum_probs=197.4
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEE
Q 012363 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFV 194 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii 194 (465)
-+|++++++.++++... .++.+...++++.++++++.+.+++++||++|+..+++.++.. ...+ ..++++|+
T Consensus 13 ~~~~~~~a~~~~~~~~~----~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~al~~~~~~-~~~~---~~~g~~Vi 84 (390)
T 3b8x_A 13 WDDLEYKAIQSVLDSKM----FTMGEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFT-KKPR---LKKGDEII 84 (390)
T ss_dssp CCHHHHHHHHHHHHHTC----CSSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTSS-SSCS---CCTTCEEE
T ss_pred CCHHHHHHHHHHHHcCC----CCCChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHHhh-hhcC---CCCcCEEE
Confidence 46889999999887632 2346678899999999999778999999999999999876310 0000 02578999
Q ss_pred EEcCCcccCccccccccCCCCcCCCCCCCCCC-ceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHH
Q 012363 195 SFTNSFHGRTMGALALTSKEHYRSPFEPVMPG-VNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLR 273 (465)
Q Consensus 195 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~ 273 (465)
+..++||+....+...+....+. +..++ .. -|+++|++++++ ++++|++.+.. |...+ +++|.
T Consensus 85 ~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~----~d~~~l~~~i~~-~~~~v~~~~~~---g~~~~----~~~i~ 148 (390)
T 3b8x_A 85 VPAVSWSTTYYPLQQYGLRVKFV----DIDINTLN----IDIESLKEAVTD-STKAILTVNLL---GNPNN----FDEIN 148 (390)
T ss_dssp EESSSCHHHHHHHHHTTCEEEEE----CBCTTTCS----BCHHHHHHHCCT-TEEEEEEECGG---GCCCC----HHHHH
T ss_pred ECCCCcHHHHHHHHHcCCEEEEE----ecCccccC----cCHHHHHHHhCc-CCeEEEEECCc---cChhh----HHHHH
Confidence 99999998876554333221111 11111 00 189999999975 56666664322 32233 99999
Q ss_pred HHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCc---cceeeEEeCH-HHHhhccC---CC------
Q 012363 274 DACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG---LPIGAALVTE-KVASAINY---GD------ 340 (465)
Q Consensus 274 ~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G---~~iG~v~~~~-~i~~~~~~---~~------ 340 (465)
++|++||++||+||+|+. |.. +....++..+|+.++||..+.+ .+.|++++++ ++.+.+.+ ..
T Consensus 149 ~l~~~~~~~li~D~a~~~-g~~---~~~~~~g~~~~~~~~s~~~~k~~~~g~gG~~~~~~~~l~~~~~~~~~~g~~~~~~ 224 (390)
T 3b8x_A 149 KIIGGRDIILLEDNCESM-GAT---FNNKCAGTFGLMGTFSSFYSNHIATMEGGCIVTDDEEIYHILLCIRAHGWTRNLP 224 (390)
T ss_dssp HHHTTSCCEEEEECTTCT-TCE---ETTEETTSSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTBSTTSC
T ss_pred HHHHHcCCEEEEECcCcc-cCE---ECCcccccccceEEEEccCCCCCccCCceEEEeCCHHHHHHHHHHHhcCCCcccc
Confidence 999999999999999982 111 1223456678999988654421 1348888875 55543321 11
Q ss_pred ----------------------CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeee--
Q 012363 341 ----------------------HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVR-- 396 (465)
Q Consensus 341 ----------------------~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-- 396 (465)
.+.++..+++.++++++.|+.+ ++..++.+++.+++.+.|. +.+.+....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l--~~~~~~~~~~~~~l~~~L~----~~~~~~~~~~~ 298 (390)
T 3b8x_A 225 KKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKL--PRFISVRRKNAEYFLDKFK----DHPYLDVQQET 298 (390)
T ss_dssp SEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHT----TCSSEEECCCC
T ss_pred ccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhc----CCCCcccCCCC
Confidence 0122336788888887777654 2455556666666655554 343222111
Q ss_pred ccce--EEEEEec----CChHHHHHHHHHCCceEeec-------C-C--C------------------CEEEEecCCCCc
Q 012363 397 GLGL--IIGIEFD----VSATPVVDACRDSGLLVLTA-------G-K--G------------------NVVRLVPPLIIS 442 (465)
Q Consensus 397 ~~g~--~~~i~~~----~~~~~~~~~l~~~Gv~v~~~-------~-~--~------------------~~lRi~~~~~~t 442 (465)
.... .+.+.++ .+..++.+.|.++||.+.+. . + . +.+|+.++..+|
T Consensus 299 ~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t 378 (390)
T 3b8x_A 299 GESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIEL 378 (390)
T ss_dssp SBCCCCEEEEEECTTSCCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCC
T ss_pred CCcccEEEEEEecCcCcccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCC
Confidence 1222 3445553 25678999999999988752 1 0 0 258999999999
Q ss_pred HHHHHHHHHHH
Q 012363 443 EQELDQAVEIL 453 (465)
Q Consensus 443 ~e~i~~~l~~l 453 (465)
++|++++++.|
T Consensus 379 ~~di~~i~~~l 389 (390)
T 3b8x_A 379 FDEIDYLREVL 389 (390)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99999999876
No 203
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.87 E-value=3.6e-22 Score=199.17 Aligned_cols=274 Identities=14% Similarity=0.048 Sum_probs=171.4
Q ss_pred HHHHHHHHhhcC-------C-CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc----eEEEEcCCcccCccccccc
Q 012363 143 IELAKRLVACSF-------A-DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT----EFVSFTNSFHGRTMGALAL 210 (465)
Q Consensus 143 ~~la~~l~~~~~-------~-~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~----~ii~~~~~yhg~~~~~~~~ 210 (465)
.+|++.++++++ . ++|++|+|+++|+..+++.+.. +++ .|++.+|+|+++...+...
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~-----------~Gd~~~~~Vlv~~P~y~~~~~~~~~~ 139 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSS-----------LARSQPVSVVAAAPFYSTYVEETTYV 139 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHHH-----------TSSSSSEEEEECSSCCTHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhcC-----------CCCCCcceEEEcCCCchhHHHHHHHc
Confidence 445555554432 4 5899999999999999987753 577 8999999998876544332
Q ss_pred cCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC--CEEEEecc
Q 012363 211 TSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG--ALLVFDEV 288 (465)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g--~llI~DEv 288 (465)
+. .+..++. |.+.++ .++...+++++|+|++|.+. + +|.+ ++|+ +++|+||+
T Consensus 140 g~-------------~~~~~~~-d~~~l~---~~~~k~v~l~~p~NPtG~~~--~-----~l~~--~~~~~~~~ii~De~ 193 (391)
T 3bwn_A 140 RS-------------GMYKWEG-DAWGFD---KKGPYIELVTSPNNPDGTIR--E-----TVVN--RPDDDEAKVIHDFA 193 (391)
T ss_dssp CB-------------TTEEEEE-ESTTCC---CCSCEEEEEESSCTTTCCCC--C-----CCC-------CCCEEEEECT
T ss_pred CC-------------eEEEecC-CHHHcC---CCCCEEEEECCCCCCCchhH--H-----HHHH--HhhcCCCEEEEeCC
Confidence 21 1112222 222222 23233444667766665443 3 2333 2266 99999999
Q ss_pred ccCCCCCCccccccccCCcccEEEecccCC-CccceeeEEe-CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhc---
Q 012363 289 QCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS--- 363 (465)
Q Consensus 289 ~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~--- 363 (465)
|.. +.. ..... ..+....+.+|||.++ .|+|+||+++ ++++++.+.......+++.+++++.++.++|+...
T Consensus 194 y~~-~~~-~~l~~-~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~ 270 (391)
T 3bwn_A 194 YYW-PHY-TPITR-RQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETC 270 (391)
T ss_dssp TCS-TTT-SCCCC-CBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT
T ss_pred CCC-CCC-Ccccc-CCCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhc
Confidence 973 211 11111 2333445568999998 5999999997 88988877643333356788999999999998642
Q ss_pred -----CchHHHHHHHHHHHHHHHHHHHHHcCCCceee--------------eccceEEEEEecCChHHHHHHHHHCCceE
Q 012363 364 -----NPAFLASVSKKGHYFKETLKQKLARNPHVKDV--------------RGLGLIIGIEFDVSATPVVDACRDSGLLV 424 (465)
Q Consensus 364 -----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--------------~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v 424 (465)
.+.+.+++++.....++.+.+.+.+++.+... +..|.++|+.++. ...+.+.|.++||.+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~-~~~~~~~l~~~gV~v 349 (391)
T 3bwn_A 271 KSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKE-ETDLVSELRRHKVMS 349 (391)
T ss_dssp TCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESS-SCCHHHHHHHTTEEC
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCc-HHHHHHHHHHCCEEE
Confidence 13445555555555555555555555422111 2335578888742 234666777899999
Q ss_pred eecC---C-CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012363 425 LTAG---K-GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 425 ~~~~---~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
.++. . .+++||++. .+++++++++++|++++++
T Consensus 350 ~pg~~fg~~~~~iRis~~--~~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 350 RAGERCGSDKKHVRVSML--SREDVFNVFLERLANMKLI 386 (391)
T ss_dssp EEGGGGTCCTTEEEEESC--SCHHHHHHHHHHHHSCC--
T ss_pred ccCCCCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 9863 1 368999876 4899999999999887654
No 204
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.86 E-value=8.3e-21 Score=190.25 Aligned_cols=292 Identities=12% Similarity=0.039 Sum_probs=189.1
Q ss_pred ccccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccc
Q 012363 131 THVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL 210 (465)
Q Consensus 131 ~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~ 210 (465)
.+.++.+.++...+++++|+++.+.+.+++++||++|+..+++.+. .++|+||+.++.|++........
T Consensus 73 ~~~y~r~~~p~~~~le~~lA~l~g~~~~i~~ssGt~Ai~~al~~l~-----------~~Gd~Vi~~~~~y~~~~~~~~~~ 141 (415)
T 2fq6_A 73 ELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFI-----------EQGDHVLMTNTAYEPSQDFCSKI 141 (415)
T ss_dssp SCCCTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTC-----------CTTCEEEEETTSCHHHHHHHHHT
T ss_pred CccccCCCCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHh-----------CCCCEEEEeCCCchHHHHHHHHH
Confidence 3445667788899999999999997788888999999999988543 16899999999998765322110
Q ss_pred cCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH--hCCEEEEecc
Q 012363 211 TSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDD--AGALLVFDEV 288 (465)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv 288 (465)
. ......+.+++.+|+++|++++++ ++++|+++..++..|.+.+ +++|.++|++ ||+++|+|++
T Consensus 142 l---------~~~G~~v~~v~~~d~~~le~ai~~-~tklV~~e~~~NptG~v~d----l~~I~~la~~~~~g~~livD~a 207 (415)
T 2fq6_A 142 L---------SKLGVTTSWFDPLIGADIVKHLQP-NTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDAIIMIDNT 207 (415)
T ss_dssp G---------GGGTCEEEEECTTCGGGGGGGCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTCEEEEECT
T ss_pred H---------HHcCcEEEEECCCCHHHHHHhhcc-CCcEEEEECCCCCCCEeec----HHHHHHHHHhhcCCCEEEEECC
Confidence 0 011233456677799999999975 5788888887777787765 8999999999 9999999999
Q ss_pred ccCCCCCCccccccccCCcccEE--EecccCCC-c-cceeeEEeCHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcC
Q 012363 289 QCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN 364 (465)
Q Consensus 289 ~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~ 364 (465)
|... ...... ....|++ +++|.+++ | ..+|++++++++++.+...........+|..+.++...++.+
T Consensus 208 ~a~~-~~~~p~-----~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~G~~~~~~~a~~~~~~l~~l-- 279 (415)
T 2fq6_A 208 WAAG-VLFKAL-----DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTL-- 279 (415)
T ss_dssp TTTT-TSSCGG-----GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH--
T ss_pred Cccc-ccCCcc-----ccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHH--
Confidence 8742 112221 2235666 57799986 4 457999998887776653211111234566666555556543
Q ss_pred chHHHHHHHHHHHHHHHHHHH--HHc--CCCcee----------eeccceEEEEEecCC--hH---HHHHHHHHCCceEe
Q 012363 365 PAFLASVSKKGHYFKETLKQK--LAR--NPHVKD----------VRGLGLIIGIEFDVS--AT---PVVDACRDSGLLVL 425 (465)
Q Consensus 365 ~~~~~~~~~~~~~l~~~l~~~--~~~--~~~~~~----------~~~~g~~~~i~~~~~--~~---~~~~~l~~~Gv~v~ 425 (465)
+...++..++...+.+.|++. +.. +|.... .++.|.++++.++.. .. .+.+.|.-.++.+.
T Consensus 280 ~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l~~~~~a~s 359 (415)
T 2fq6_A 280 GVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYS 359 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCEECSC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhCCcCeEecc
Confidence 233444555555665555442 000 121100 124678889988531 22 23333221121111
Q ss_pred ------------e-----------cC-CCCEEEEecCCCCcHHHHHHHHHHHHH
Q 012363 426 ------------T-----------AG-KGNVVRLVPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 426 ------------~-----------~~-~~~~lRi~~~~~~t~e~i~~~l~~l~~ 455 (465)
| .+ .++.+|+++.+..++++++.+.++|++
T Consensus 360 ~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 360 WGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp CCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred CCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 1 11 136899999999999999888888764
No 205
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.86 E-value=2.3e-21 Score=195.43 Aligned_cols=317 Identities=12% Similarity=-0.021 Sum_probs=198.2
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhh-cccc--cC--C-C---CCHHHHHHHHHHHhhc----CCCeEEecCC
Q 012363 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANV-LTHV--SN--M-Y---YSIPQIELAKRLVACS----FADRVFFSNT 163 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~-~~~~--~~--~-~---~~~~~~~la~~l~~~~----~~~~v~~~~s 163 (465)
.+..+||..+.. .++ .++.+++++.+.+.. ..+. +. . + ..+.++++++++.+.. ..++|++|+|
T Consensus 55 ~~~~i~l~~g~~--~~~-~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G 131 (427)
T 2hox_A 55 QGCSADVASGDG--LFL-EEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVG 131 (427)
T ss_dssp TTCCEECCSCCC--GGG-HHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESH
T ss_pred CCceEEecCcCC--CCC-CCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCC
Confidence 445678877655 333 346677787776632 1111 11 1 1 1223455555554332 2679999999
Q ss_pred HHHHHHHHHHHH--------HHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCH
Q 012363 164 GTEANEAAIKFA--------RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNI 235 (465)
Q Consensus 164 G~eA~~~al~~a--------~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 235 (465)
+++|+.++++.+ . .+++.|++.+|+|+++.......+... .... .|+
T Consensus 132 ~~~al~~~~~~l~~~~~~~~~-----------~~Gd~Vlv~~P~y~~~~~~~~~~g~~~-------------~~~~-~d~ 186 (427)
T 2hox_A 132 VTQLIHGLVISLSPNMTATPD-----------APESKVVAHAPFYPVFREQTKYFDKKG-------------YVWA-GNA 186 (427)
T ss_dssp HHHHHHHHHHHHSCCTTTCTT-----------SCCEEEEECSSCCHHHHHHHHHSCBTT-------------EEEE-EEG
T ss_pred HHHHHHHHHHHHhhccccccC-----------CCCCEEEEeCCCcccHHHHHHHcCCee-------------eeec-CCH
Confidence 999999999866 3 268999999999987765544332211 0111 277
Q ss_pred HHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecc
Q 012363 236 EATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAK 315 (465)
Q Consensus 236 ~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK 315 (465)
++|+++++++...+++++|+|++|.++ + +. ++ ++..|.||.+.+ ... ...... .+...-+.+|||
T Consensus 187 ~~l~~~~~~~~k~v~l~~p~NPtG~~~--~-~~-------l~--~~~~i~d~~~~~-~~~-s~~~~~-~~~~i~~~S~SK 251 (427)
T 2hox_A 187 ANYVNVSNPEQYIEMVTSPNNPEGLLR--H-AV-------IK--GCKSIYDMVYYW-PHY-TPIKYK-ADEDILLFTMSK 251 (427)
T ss_dssp GGGTTCSCGGGEEEEEESSCTTTCCCC--C-CS-------ST--TCEEEEECTTCS-TTT-SCCCSC-BCCSEEEEEHHH
T ss_pred HHHHHhhcCCceEEEEcCCCCCccccc--H-HH-------Hc--CCCEEEeecccC-CCC-CccccC-CCceEEEEeChh
Confidence 888888875444455667776665433 3 32 22 566788887642 110 111111 233334457899
Q ss_pred cCC-CccceeeEEe-CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhc---------CchHHHHHHHHHHHHHHHHHH
Q 012363 316 PLA-GGLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS---------NPAFLASVSKKGHYFKETLKQ 384 (465)
Q Consensus 316 ~lg-~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~---------~~~~~~~~~~~~~~l~~~l~~ 384 (465)
.++ .|+|+||+++ ++++++.+.......+++.+++++.++.++|+... .+++.++.++.....++.|.+
T Consensus 252 ~~g~~G~RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 331 (427)
T 2hox_A 252 FTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITA 331 (427)
T ss_dssp HTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 998 5999999999 58988887654334456788899999888887531 134444444444444555555
Q ss_pred HHHcCCCcee---------------eeccceEEEEEecCChHHHHHHHH-HCCceEeecC----CCCEEEEecCCCCcHH
Q 012363 385 KLARNPHVKD---------------VRGLGLIIGIEFDVSATPVVDACR-DSGLLVLTAG----KGNVVRLVPPLIISEQ 444 (465)
Q Consensus 385 ~~~~~~~~~~---------------~~~~g~~~~i~~~~~~~~~~~~l~-~~Gv~v~~~~----~~~~lRi~~~~~~t~e 444 (465)
.+.+.+.+.. .+..|+|+|+.+..+..++++.|+ ++||.+.++. ..+++|+++. .+++
T Consensus 332 ~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~Ris~~--~~~e 409 (427)
T 2hox_A 332 LLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLI--KTQD 409 (427)
T ss_dssp HHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECS--SCHH
T ss_pred HHHhCcCccccccccccccccccccCCCCceEEEEECCCcHHHHHHHHHHHCCEEEcCCCccCCCCCEEEEEec--CCHH
Confidence 5555532211 122378888888544556777776 7899998863 1368999876 3889
Q ss_pred HHHHHHHHHHHHHH
Q 012363 445 ELDQAVEILCKTLP 458 (465)
Q Consensus 445 ~i~~~l~~l~~~l~ 458 (465)
++++++++|.++++
T Consensus 410 ~l~~~l~~l~~~~~ 423 (427)
T 2hox_A 410 DFDQLMYYLKDMVK 423 (427)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998874
No 206
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.85 E-value=2.5e-20 Score=183.67 Aligned_cols=316 Identities=11% Similarity=0.033 Sum_probs=190.2
Q ss_pred CCEEEecccCcccccCCCCCHHHHHHHHHHHhhccc-------ccCCCC--CHHHHHHHHHHHhhcC-CC--e-EEecCC
Q 012363 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH-------VSNMYY--SIPQIELAKRLVACSF-AD--R-VFFSNT 163 (465)
Q Consensus 97 G~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~-------~~~~~~--~~~~~~la~~l~~~~~-~~--~-v~~~~s 163 (465)
++.|+|..+. . ..+|+|++|+.+.+..... ....++ .+...+++++++++++ .+ + +++|+|
T Consensus 3 ~~~~l~~~~~-----~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g 76 (362)
T 2c0r_A 3 ERAYNFNAGP-----A-ALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGG 76 (362)
T ss_dssp CCCEECCSSS-----C-CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSH
T ss_pred cceeeccCCC-----C-CCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCC
Confidence 4456665442 2 2789999999998754211 011111 1236788899999888 32 6 477899
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcc-ccccccCCCCcCCCCCCCCC--CceEeeCCCHHHHHh
Q 012363 164 GTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTM-GALALTSKEHYRSPFEPVMP--GVNFVEYGNIEATRK 240 (465)
Q Consensus 164 G~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~le~ 240 (465)
|++|+..+++.+. .++++|++.++.+++... ......+...+. +... +.... .|+++++
T Consensus 77 ~t~a~~~~~~~l~-----------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~v----~~~~~~~~~~~--~~~~~~~- 138 (362)
T 2c0r_A 77 ASTQFAMIPMNFL-----------KEGQTANYVMTGSWASKALKEAKLIGDTHVA----ASSEASNYMTL--PKLQEIQ- 138 (362)
T ss_dssp HHHHHHHHHHHHC-----------CTTCEEEEEECSHHHHHHHHHHHHHSCEEEE----EECGGGTTCSC--CCGGGCC-
T ss_pred chHHHHHHHHhcC-----------CCCCeEEEEecCcHhHHHHHHHHHhCCeEEE----ecccccccccC--CCHHHcc-
Confidence 9999999998664 157889888877655421 111111111111 1000 00000 1333332
Q ss_pred hcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE--EecccCC
Q 012363 241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLA 318 (465)
Q Consensus 241 ~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg 318 (465)
+++ ++++|++.+.++.+|....+ +++| ||+++|+||+|..+ .. ..... .. |++ +++|++|
T Consensus 139 -i~~-~t~~v~~~~~~n~tG~~~~~---l~~i------~~~~vivD~a~~~~-~~--~~~~~--~~--d~~~~s~~K~~g 200 (362)
T 2c0r_A 139 -LQD-NAAYLHLTSNETIEGAQFKA---FPDT------GSVPLIGDMSSDIL-SR--PFDLN--QF--GLVYAGAQKNLG 200 (362)
T ss_dssp -CCT-TEEEEEEESEETTTTEECSS---CCCC------TTSCEEEECTTTTT-SS--CCCGG--GC--SEEEEETTTTTC
T ss_pred -cCC-CcCEEEEeCCcCccceeccc---cccc------CCCEEEEEChhhcc-CC--ccchh--HC--cEEEEecccccc
Confidence 544 56666665545555654222 4444 89999999999733 21 11111 12 554 5789997
Q ss_pred C-ccceeeEEeCHHHHhhccCC------------CCcCCCCChHHHHHHHHHHHHHhcC----chHHHHHHHHHHHHHHH
Q 012363 319 G-GLPIGAALVTEKVASAINYG------------DHGSTFAGSPLVCNAAIAVLDKISN----PAFLASVSKKGHYFKET 381 (465)
Q Consensus 319 ~-G~~iG~v~~~~~i~~~~~~~------------~~~~t~~~~~~~~~aa~a~L~~~~~----~~~~~~~~~~~~~l~~~ 381 (465)
. | +|++++++++++.+.+. .....++.+++++.++.++|+.+.+ +...++.+++.+++.+.
T Consensus 201 ~~G--~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (362)
T 2c0r_A 201 PSG--VTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDA 278 (362)
T ss_dssp CSS--CEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred CcC--cEEEEEcHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 4 5 89999999988776531 0122346678888999999987543 23344444444555444
Q ss_pred HHHHHHcCC-Cceee----eccceEEEEEec--CChHHHHHHHHHCCceEeecCC-CCEEEEecCCCCcHHHHHHHHHHH
Q 012363 382 LKQKLARNP-HVKDV----RGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEIL 453 (465)
Q Consensus 382 l~~~~~~~~-~~~~~----~~~g~~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~e~i~~~l~~l 453 (465)
| .+.+ ..... ...+.++++.++ .+..++.+.|.++||.+.++.. .+.+|+++...++++|++++++.|
T Consensus 279 L----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~~~e~i~~l~~~l 354 (362)
T 2c0r_A 279 I----DQSGGFYRGCVDVDSRSDMNITFRLASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFM 354 (362)
T ss_dssp H----HTSTTSSEESSCGGGBCSSEEEEECSCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHH
T ss_pred H----HHcCCccccCCChHHcCCcEEEEEcCCcchHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4 4444 21111 112445666663 2456799999999998776432 356999998888999999999999
Q ss_pred HHHHHHh
Q 012363 454 CKTLPVL 460 (465)
Q Consensus 454 ~~~l~~~ 460 (465)
++++++.
T Consensus 355 ~~~~~~~ 361 (362)
T 2c0r_A 355 EHFKRSR 361 (362)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9887653
No 207
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.85 E-value=3.2e-21 Score=195.50 Aligned_cols=284 Identities=12% Similarity=0.038 Sum_probs=182.3
Q ss_pred CCHHHHHHHHHHHhhcCC-CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCc
Q 012363 138 YSIPQIELAKRLVACSFA-DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHY 216 (465)
Q Consensus 138 ~~~~~~~la~~l~~~~~~-~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~ 216 (465)
+.....++++++++ ++. +.+++++|+++|+..+++++.. ++++|++..++|++........+....+
T Consensus 55 ~~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~~~-----------~gd~Vlv~~~~h~s~~~~~~~~G~~~~~ 122 (446)
T 2x3l_A 55 PEEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSFSQ-----------KKGDILMARNVHKSVLHALDISQQEGHF 122 (446)
T ss_dssp CSSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTTTT-----------SSSCEEECTTCCHHHHHHHHHHTCCEEE
T ss_pred cchHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHhcC-----------CCCEEEEecCccHHHHHHHHHcCCeEEE
Confidence 34457788899999 884 5789999999999999997641 6889999999998877655443332222
Q ss_pred CCCCCCC--CCC--c-eEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC
Q 012363 217 RSPFEPV--MPG--V-NFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291 (465)
Q Consensus 217 ~~~~~~~--~~~--~-~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g 291 (465)
. +. ..+ . ..+ |+++| +.+ ++++|++++ .++.|.+.+ +++|.++|++||++||+||+|++
T Consensus 123 v----~~~~~~~~~~~~~~---d~~~l---~~~-~~~~v~~~~-~n~~G~~~~----l~~I~~l~~~~~~~livDea~~~ 186 (446)
T 2x3l_A 123 I----ETHQSPLTNHYNKV---NLSRL---NND-GHKLVVLTY-PNYYGETFN----VEEVIKSLHQLNIPVLIDEAHGA 186 (446)
T ss_dssp C----EEEECTTTSSEEEE---EC-----------CCEEEEES-SCTTSCCCC----HHHHHHHHHHTTCCEEEECTTCT
T ss_pred E----eCeeccccCcCCCC---CHHHH---cCC-CceEEEEEC-CCCCeEecC----HHHHHHHHHhcCCeEEEcchhhh
Confidence 1 11 111 0 111 45555 333 456666666 333666655 89999999999999999999986
Q ss_pred -CCCCCccccccccCCcccEEEec--ccCCCccceeeEEeCHHHHh--hccCC-CCcCCCCChHHHHHHHHHHHHHhcC-
Q 012363 292 -LGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVAS--AINYG-DHGSTFAGSPLVCNAAIAVLDKISN- 364 (465)
Q Consensus 292 -~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~--~~~~~-~~~~t~~~~~~~~~aa~a~L~~~~~- 364 (465)
+...+........ .+|+++.| |+++++.++|++++++++++ .+... ....+.+.+...+++..++++.+..
T Consensus 187 ~~~f~~~~~~~~~~--g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~~l~~~ 264 (446)
T 2x3l_A 187 HFGLQGFPDSTLNY--QADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASLESAAQFYKTY 264 (446)
T ss_dssp TTTSTTSCCCGGGG--TCSEEEECHHHHSSSCTTCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHC
T ss_pred hhccCCCCCChHHc--CCCEEEECCccccccccccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh
Confidence 3222321122222 36787655 98887778899999877654 22211 1122334566666665556665533
Q ss_pred --chHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEe-cCChHHHHHHHHHCCceEeecCCCCEEEEecCCCC
Q 012363 365 --PAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF-DVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLII 441 (465)
Q Consensus 365 --~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~-~~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~ 441 (465)
+++.++.+++.+++++. .+... ....+..+++.+ ..+..++.+.|.++||.+...+. +.+|++++...
T Consensus 265 g~~~~~~~~~~l~~~l~~~------g~~~~--~~~~~~~l~i~~~~~~~~~l~~~L~~~GI~v~~~g~-~~iRi~~~~~~ 335 (446)
T 2x3l_A 265 DSTLFFAKRAQLIECLENK------GFEML--QVDDPLKLLIKYEGFTGHDIQNWFMNAHIYLELADD-YQALAILPLWH 335 (446)
T ss_dssp CCHHHHHHHHHHHHHHHHH------TCEEE--ECSSTTEEEEECTTSCHHHHHHHHHHTTEEESEECS-SCEEEECCCCC
T ss_pred CHHHHHHHHHHHHHHHHHc------CCEEC--cCCCCeEEEEEeCCcCHHHHHHHHHHCCCEEEecCC-CEEEEEeecCC
Confidence 22566666666666554 22111 111244667776 34677899999999999973444 67999999888
Q ss_pred cHHHHHHHHHHHHHHHHHhh
Q 012363 442 SEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 442 t~e~i~~~l~~l~~~l~~~~ 461 (465)
|++++ +++++|+++++.+.
T Consensus 336 t~e~i-~l~~aL~~~~~~~~ 354 (446)
T 2x3l_A 336 HDDTY-LFDSLLRKIEDMIL 354 (446)
T ss_dssp TTCCC-CHHHHHHHHHTCCC
T ss_pred CHHHH-HHHHHHHHHHHhhc
Confidence 99999 99999999886653
No 208
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.85 E-value=4.4e-19 Score=180.26 Aligned_cols=327 Identities=12% Similarity=-0.030 Sum_probs=191.3
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCC--HHHHHHHHHHHhhcCC--C-----eEEecCCHHHHHHHHHHHHHHHhhh----
Q 012363 115 GDADWIKAVVDQANVLTHVSNMYYS--IPQIELAKRLVACSFA--D-----RVFFSNTGTEANEAAIKFARKFQRH---- 181 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~--~~~~~la~~l~~~~~~--~-----~v~~~~sG~eA~~~al~~a~~~t~~---- 181 (465)
.+|.+.+++.+++......+..++. ..+.++++++++.++. + .+++++||+||+..++..++.....
T Consensus 54 ~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~ 133 (452)
T 2dgk_A 54 DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEA 133 (452)
T ss_dssp CCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 5688999998887643222222221 2256788888888872 2 3999999999999999887642110
Q ss_pred cCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCC-CceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCC
Q 012363 182 SNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP-GVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGG 260 (465)
Q Consensus 182 ~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G 260 (465)
.+.. ..+++||+.+ .|.....+....+..... .+..+ +.. -|+++|+++|+++ +++|++...++..|
T Consensus 134 ~G~~--~~~~~vi~~~--~h~~~~~~~~~~G~~v~~---v~~~~~~~~----~d~~~l~~~i~~~-t~~v~~~~~~n~tG 201 (452)
T 2dgk_A 134 AGKP--TDKPNLVCGP--VQICWHKFARYWDVELRE---IPMRPGQLF----MDPKRMIEACDEN-TIGVVPTFGVTYTG 201 (452)
T ss_dssp TTCC--CSCCEEEESS--CCHHHHHHHHHTTCEEEE---CCCBTTBCS----CCHHHHHHHCCTT-EEEEECBBSCTTTC
T ss_pred cCCC--CCCcEEEECC--CcHHHHHHHHHcCceEEE---EecCCCCCe----ECHHHHHHHHhhC-CEEEEEEcCCcCCc
Confidence 0000 0134677766 555443333322221111 11111 111 2899999999764 55555444444456
Q ss_pred cccCCHHHHHHHHHHHHHh------CCEEEEeccccCCCC---CCc-cccccccCCcccEEEec--ccCCCccceeeEEe
Q 012363 261 IYSATKEFLQFLRDACDDA------GALLVFDEVQCGLGR---TGY-LWAHEHYGIFPDIMTLA--KPLAGGLPIGAALV 328 (465)
Q Consensus 261 ~~~~~~~~l~~l~~l~~~~------g~llI~DEv~~g~gr---~g~-~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~ 328 (465)
.+.+ +++|.++|++| |+++++|++|.++.. .+. .+.... ...|+++++ |.+.+|+++|++++
T Consensus 202 ~~~~----l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~hK~~~~~~~~G~~~~ 275 (452)
T 2dgk_A 202 NYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRL--PRVKSISASGHKFGLAPLGCGWVIW 275 (452)
T ss_dssp BBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS--TTEEEEEEETTTTTCCCSSCEEEEE
T ss_pred ccCC----HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCC--CCCcEEEECcccccCCCCCeEEEEE
Confidence 6655 99999999996 999999999987531 111 011111 135766654 86667899999999
Q ss_pred CHH-HH-hhcc--CCCCc---------CCCCC-hHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCcee
Q 012363 329 TEK-VA-SAIN--YGDHG---------STFAG-SPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKD 394 (465)
Q Consensus 329 ~~~-i~-~~~~--~~~~~---------~t~~~-~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 394 (465)
+++ ++ +.+. +...+ ++-.. ..+++.+++..+. .+. +++..+....+++.+.+.+.+.+.+..
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg---~~g-~~~~~~~~~~~a~~l~~~L~~~~~~~~ 351 (452)
T 2dgk_A 276 RDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLG---REG-YTKVQNASYQVAAYLADEIAKLGPYEF 351 (452)
T ss_dssp SSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHHHTTSSEEE
T ss_pred cCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHh---HHH-HHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 643 33 3331 11111 11111 3344444444332 222 233333333344444444455553333
Q ss_pred e-e----ccceEEEEEecC------ChHHHHHHHHHCCceEee----cC--CCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012363 395 V-R----GLGLIIGIEFDV------SATPVVDACRDSGLLVLT----AG--KGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 395 ~-~----~~g~~~~i~~~~------~~~~~~~~l~~~Gv~v~~----~~--~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
+ + ....++.+.++. +..++.+.|.++|+.+.. .. ...++|+++....|+++++++++.|++++
T Consensus 352 ~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~~~ 431 (452)
T 2dgk_A 352 ICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASL 431 (452)
T ss_dssp EEECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred ecCCCCCCCeEEEEEEecCcccccCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 3 2 345677777632 237899999999996542 11 12589999988889999999999999998
Q ss_pred HHhhhc
Q 012363 458 PVLDSN 463 (465)
Q Consensus 458 ~~~~~~ 463 (465)
+.+++.
T Consensus 432 ~~~~~~ 437 (452)
T 2dgk_A 432 KYLSDH 437 (452)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 877654
No 209
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.85 E-value=4.4e-19 Score=182.39 Aligned_cols=330 Identities=12% Similarity=0.020 Sum_probs=193.0
Q ss_pred CCCHHHHHHHHHHHhhcccccCCCC--CHHHHHHHHHHHhhcCCC-------eEEecCCHHHHHHHHHHHHHHHhhh---
Q 012363 114 HGDADWIKAVVDQANVLTHVSNMYY--SIPQIELAKRLVACSFAD-------RVFFSNTGTEANEAAIKFARKFQRH--- 181 (465)
Q Consensus 114 h~~p~v~~a~~~~~~~~~~~~~~~~--~~~~~~la~~l~~~~~~~-------~v~~~~sG~eA~~~al~~a~~~t~~--- 181 (465)
..+|.+.+++.+.+......+..++ ...+.++++++++.++.+ ...+++||+||+..++.+++.....
T Consensus 67 ~~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~ 146 (502)
T 3hbx_A 67 WMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRK 146 (502)
T ss_dssp CCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHH
Confidence 3678999999887765322111221 122556778888888744 3456999999999998877643110
Q ss_pred -cCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCC-ceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCC
Q 012363 182 -SNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPG-VNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEG 259 (465)
Q Consensus 182 -~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~ 259 (465)
.+.. ..++.|++.+++|..+...+...+.... . .+...+ .. -|+++|+++++++...++++.|++++
T Consensus 147 ~~G~~--~~~~~vi~~~~~h~s~~~~~~~~G~~~~-~---v~~~~~~~~----~d~~~l~~~i~~~t~~v~~~~~~n~t- 215 (502)
T 3hbx_A 147 AEGKP--VDKPNIVTGANVQVCWEKFARYFEVELK-E---VKLSEGYYV----MDPQQAVDMVDENTICVAAILGSTLN- 215 (502)
T ss_dssp HTTCC--CSCCEEEEETTCCHHHHHHHHHTTCEEE-E---ECCBTTBCS----CCHHHHHHHCCTTEEEEEEEBSCTTT-
T ss_pred hcCCC--CCCcEEEEcCCchHHHHHHHHHcCceeE-E---EecCCCcCc----CCHHHHHHHHhhCCEEEEEecCCCCC-
Confidence 0000 0123788887776554433322221111 0 111111 11 18999999998644334445555555
Q ss_pred CcccCCHHHHHHHHHHHHHh------CCEEEEeccccCCCC---CCc-cccccccCCcccEEEe--cccCCCccceeeEE
Q 012363 260 GIYSATKEFLQFLRDACDDA------GALLVFDEVQCGLGR---TGY-LWAHEHYGIFPDIMTL--AKPLAGGLPIGAAL 327 (465)
Q Consensus 260 G~~~~~~~~l~~l~~l~~~~------g~llI~DEv~~g~gr---~g~-~~~~~~~~~~pdi~t~--sK~lg~G~~iG~v~ 327 (465)
|.+.+ +++|.++|+++ |++|++|++|.++.. .+. .+.+.. ...|++++ .|.+.++.++|+++
T Consensus 216 G~~~~----l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~--~~~D~v~~s~hK~l~~p~g~G~~~ 289 (502)
T 3hbx_A 216 GEFED----VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRL--PLVKSINVSGHKYGLVYAGIGWVI 289 (502)
T ss_dssp CCBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS--TTEEEEEEETTTTTCCCSSCEEEE
T ss_pred CcccC----HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCC--CCceEEEECcccccCCCCCeEEEE
Confidence 66655 99999999999 999999999986521 111 111111 13566654 48777778899887
Q ss_pred eC-HHHH-hhcc--CCCCcC-----C--CCChHHHHHHHHHHHHHhcCc---hHHHHHHHHHHHHHHHHHHHHHcCCCce
Q 012363 328 VT-EKVA-SAIN--YGDHGS-----T--FAGSPLVCNAAIAVLDKISNP---AFLASVSKKGHYFKETLKQKLARNPHVK 393 (465)
Q Consensus 328 ~~-~~i~-~~~~--~~~~~~-----t--~~~~~~~~~aa~a~L~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 393 (465)
.+ ++.+ +.+. +...+. + ++.+.....+..++++.+..+ ...++..++.+++.+.| .+.+.+.
T Consensus 290 ~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L----~~~~~~~ 365 (502)
T 3hbx_A 290 WRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGL----EKTERFN 365 (502)
T ss_dssp ESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTTTCEE
T ss_pred EeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCCEE
Confidence 75 3433 2221 111110 1 122222333344444443333 33444445555555444 4455333
Q ss_pred eee--ccceEEEEEec----CChHHHHHHHHHCCceEeecC------CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhh
Q 012363 394 DVR--GLGLIIGIEFD----VSATPVVDACRDSGLLVLTAG------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 394 ~~~--~~g~~~~i~~~----~~~~~~~~~l~~~Gv~v~~~~------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
.+. ....++.+.+. .+..++.+.|.++|+++.... ...++||++...+|+++++.+++.|++++++++
T Consensus 366 ~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~~l~~l~ 445 (502)
T 3hbx_A 366 IVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELD 445 (502)
T ss_dssp ECSCSSSSSEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCceEEEEEecCCCcCCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 332 24567777763 234589999999999875321 125799999999999999999999999999887
Q ss_pred hcC
Q 012363 462 SNS 464 (465)
Q Consensus 462 ~~~ 464 (465)
+.+
T Consensus 446 ~~~ 448 (502)
T 3hbx_A 446 ELP 448 (502)
T ss_dssp TCC
T ss_pred hCc
Confidence 653
No 210
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.84 E-value=4.5e-20 Score=181.42 Aligned_cols=310 Identities=9% Similarity=-0.005 Sum_probs=186.3
Q ss_pred CCHHHHHHHHHHHhhcc---cc---c-CCCC--CHHHHHHHHHHHhhcCC---CeEEecCCH-HHHHHHHHHHHHHHhhh
Q 012363 115 GDADWIKAVVDQANVLT---HV---S-NMYY--SIPQIELAKRLVACSFA---DRVFFSNTG-TEANEAAIKFARKFQRH 181 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~---~~---~-~~~~--~~~~~~la~~l~~~~~~---~~v~~~~sG-~eA~~~al~~a~~~t~~ 181 (465)
.+|.|++|+.+.+.... .. . ..++ .+...+++++++++++. ++|++++|+ ++|+..++..+....
T Consensus 14 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~~~-- 91 (360)
T 1w23_A 14 LPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKG-- 91 (360)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTT--
T ss_pred CCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcCCC--
Confidence 67999999998875420 00 0 0011 12367899999998873 489999998 999999887554210
Q ss_pred cCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHh-hcCCCCeEEEEEcccCCCCC
Q 012363 182 SNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRK-LIQPGKTAAVFVEPIQGEGG 260 (465)
Q Consensus 182 ~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~-~l~~~~~a~vi~ep~~~~~G 260 (465)
.+++.|+...++|+. ...+... +...+ .+..+.. .+.|+++|++ ++++ ++++|+++..++.+|
T Consensus 92 ------~~g~~vi~~~~~~~~-~~~~~~~-g~~~~----v~~~~~~---~~~d~~~l~~~~i~~-~~k~v~~~~~~nptG 155 (360)
T 1w23_A 92 ------TIGNYVLTGSWSEKA-LKEAKLL-GETHI----AASTKAN---SYQSIPDFSEFQLNE-NDAYLHITSNNTIYG 155 (360)
T ss_dssp ------CEEEEEECSHHHHHH-HHHHHTT-SEEEE----EEECGGG---TSCSCCCGGGCCCCT-TEEEEEEESEETTTT
T ss_pred ------CcccEEEecchhHHH-HHHHHHh-CCeEE----eeccccc---CcCCccchHhhccCC-CCCEEEEeCCCCCcc
Confidence 023445544444332 1111111 11110 1111000 0136788888 7764 567777666566666
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEE--EecccCCCccceeeEEeCHHHHhhccC
Q 012363 261 IYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAALVTEKVASAINY 338 (465)
Q Consensus 261 ~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~ 338 (465)
.+.+ +++++||++||+||+|+.+... .....+ |++ +++|.++.+ ++|++++++++++.+.+
T Consensus 156 ~~~~---------~i~~~~~~~li~D~a~~~~~~~---~~~~~~----di~~~s~sK~~~~~-G~G~~~~~~~~~~~~~~ 218 (360)
T 1w23_A 156 TQYQ---------NFPEINHAPLIADMSSDILSRP---LKVNQF----GMIYAGAQKNLGPS-GVTVVIVKKDLLNTKVE 218 (360)
T ss_dssp EECS---------SCCCCCSSCEEEECTTTTTSSC---CCGGGC----SEEEEETTTTTSCT-TCEEEEEEHHHHCSCCT
T ss_pred eecc---------cccccCCceEEEechhhcCCCC---cCcccC----CEEEEEcccccCCC-CcEEEEEcHHHHhhccc
Confidence 6543 2334899999999999854321 112222 555 466999742 48999999998887754
Q ss_pred CC-----------CcCCC-CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCc-eee--e-cc-ceE
Q 012363 339 GD-----------HGSTF-AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHV-KDV--R-GL-GLI 401 (465)
Q Consensus 339 ~~-----------~~~t~-~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~--~-~~-g~~ 401 (465)
.. ...++ +.+..++.++.++++.+.+.+.++++.+....+++.+.+.+.+++.+ ... + .. +.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~ 298 (360)
T 1w23_A 219 QVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMN 298 (360)
T ss_dssp TCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSE
T ss_pred CCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCCchhccCcE
Confidence 32 11222 34667777777888765432123333333334444444444444422 211 2 12 447
Q ss_pred EEEEecC--ChHHHHHHHHHCCceEeecCC-CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012363 402 IGIEFDV--SATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 402 ~~i~~~~--~~~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
+++.++. ...++.+.|.++||.+.++.. .+++|++++...+++++++++++|++++++
T Consensus 299 ~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 299 VTFNLRNEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCccHHHHHHHHHHCCeeeecCCCCCCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 8888742 346788889999999977532 367999999888999999999999988754
No 211
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.84 E-value=9.5e-19 Score=180.23 Aligned_cols=298 Identities=15% Similarity=0.033 Sum_probs=177.7
Q ss_pred HHHHHHHHHhhcCC----CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC-----c-eEEEEcCCcccCcccccccc
Q 012363 142 QIELAKRLVACSFA----DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA-----T-EFVSFTNSFHGRTMGALALT 211 (465)
Q Consensus 142 ~~~la~~l~~~~~~----~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~-----~-~ii~~~~~yhg~~~~~~~~~ 211 (465)
+.++.+++++.++. +.++|++||+||+..+++.++......-. .++ + .|++.++.|+... .+....
T Consensus 134 e~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~---~~G~~~~~~~~v~~s~~~h~s~~-~~~~~~ 209 (504)
T 2okj_A 134 EQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVK---TKGMAAVPKLVLFTSEQSHYSIK-KAGAAL 209 (504)
T ss_dssp HHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHH---HHCGGGSCCEEEEEETTSCTHHH-HHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHh---hcCccccCCeEEEECCcchHHHH-HHHHHc
Confidence 55666788888873 48999999999999999998753210000 012 3 5666655554433 222221
Q ss_pred CCCCcCCCCCCCCCCceEeeCC-----CHHHHHhhcCCC-----CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCC
Q 012363 212 SKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPG-----KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGA 281 (465)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~-----~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~ 281 (465)
+... ..+..+|.+ |+++|+++|++. .+++|++...++..|.+.+ +++|.++|++||+
T Consensus 210 g~g~---------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~----l~~I~~la~~~g~ 276 (504)
T 2okj_A 210 GFGT---------DNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADICEKYNL 276 (504)
T ss_dssp TSCG---------GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC----HHHHHHHHHHHTC
T ss_pred CCCc---------ccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCC
Confidence 1100 022233332 899999998631 4677777666566676655 9999999999999
Q ss_pred EEEEeccccCCCCCCccccccccCC-cccEEEec--ccCCCccceeeEEeCH-HHHhhc----cCCC-CcCC--------
Q 012363 282 LLVFDEVQCGLGRTGYLWAHEHYGI-FPDIMTLA--KPLAGGLPIGAALVTE-KVASAI----NYGD-HGST-------- 344 (465)
Q Consensus 282 llI~DEv~~g~gr~g~~~~~~~~~~-~pdi~t~s--K~lg~G~~iG~v~~~~-~i~~~~----~~~~-~~~t-------- 344 (465)
++++|++|.++......+.....++ .+|+++++ |.+++++++|++++++ +++... .+.. ....
T Consensus 277 ~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 356 (504)
T 2okj_A 277 WLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDT 356 (504)
T ss_dssp EEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCC
T ss_pred EEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCc
Confidence 9999999987643222111222333 57888875 9988778999999976 455431 1111 0111
Q ss_pred --------CCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceee---eccceEEEEEe-cCC---
Q 012363 345 --------FAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDV---RGLGLIIGIEF-DVS--- 409 (465)
Q Consensus 345 --------~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---~~~g~~~~i~~-~~~--- 409 (465)
...+.+.+.+++.++..-.-+++.++..++.+++.+. +.+.+.+..+ .....++.+.. +..
T Consensus 357 ~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~----L~~~~~~~~~~~~~p~~~~v~f~~~~~~~~~ 432 (504)
T 2okj_A 357 GDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAK----IKNREEFEMVFNGEPEHTNVCFWYIPQSLRG 432 (504)
T ss_dssp GGGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTTCTTEEESSSSCCSSSCEEEEECCGGGSS
T ss_pred ccCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HhcCCCEEEEecCCCCeEEEEEEEeCccccc
Confidence 0123566666666654211123344444445554444 4444433322 13344444443 210
Q ss_pred --------------hHHHHHHHHHCCceEee-c--CC-CCEEEEecC-CCCcHHHHHHHHHHHHHHHHHh
Q 012363 410 --------------ATPVVDACRDSGLLVLT-A--GK-GNVVRLVPP-LIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 410 --------------~~~~~~~l~~~Gv~v~~-~--~~-~~~lRi~~~-~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
..++.+.|.++|+++.. . .. .+++|+++. ..+|++||++++++|+++++++
T Consensus 433 ~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 502 (504)
T 2okj_A 433 VPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 502 (504)
T ss_dssp CCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred cccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34688889999964432 2 11 157999985 7889999999999999887653
No 212
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.84 E-value=1.5e-19 Score=183.79 Aligned_cols=295 Identities=9% Similarity=0.008 Sum_probs=177.0
Q ss_pred HHHHHHHHHhhcCCC-eEEecCCHH-HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCC
Q 012363 142 QIELAKRLVACSFAD-RVFFSNTGT-EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP 219 (465)
Q Consensus 142 ~~~la~~l~~~~~~~-~v~~~~sG~-eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 219 (465)
..++++++++.++.+ .++||+||+ .++..++..++.+. +++.||+.++.|+... ......+......+
T Consensus 135 ~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~~---------~~~~vi~~~~~h~s~~-~~~~~~G~~~~~v~ 204 (456)
T 2z67_A 135 TNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKY---------GSNVVIYPYASHKSPI-KAVSFVGMNMRLVE 204 (456)
T ss_dssp HHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHH---------CCCEEEEECCCCHHHH-HHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHhc---------CCCEEEEECCCcHHHH-HHHHHcCCCceEEE
Confidence 567888999998833 399999999 56666777665432 2556888888665433 33222221111100
Q ss_pred CCCCCCCceEeeCCCHHHHHhhc-CC---CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCC
Q 012363 220 FEPVMPGVNFVEYGNIEATRKLI-QP---GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT 295 (465)
Q Consensus 220 ~~~~~~~~~~~~~~d~~~le~~l-~~---~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~ 295 (465)
..+...+.. .|+++|++++ +. .++.+|++...++..|.+.+ +++|.++|++||+++|+||+|.++. .
T Consensus 205 ~~~~~~~~~----~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~----l~~I~~la~~~g~~v~vD~A~~~~~-~ 275 (456)
T 2z67_A 205 TVLDGDRVY----VPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQN-N 275 (456)
T ss_dssp CEEETTEEE----CCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTC-H
T ss_pred EeccCCCCC----cCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCcEEEECcchHHH-H
Confidence 000001111 3899999999 41 34555544433344566655 9999999999999999999987652 2
Q ss_pred Cc-cccccccCCcccEEEe--cccCCCccceeeEEe-CHHHHhhccCCCCcCCCCChHHHHHHHHHHHHHhcCchHHHHH
Q 012363 296 GY-LWAHEHYGIFPDIMTL--AKPLAGGLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASV 371 (465)
Q Consensus 296 g~-~~~~~~~~~~pdi~t~--sK~lg~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~ 371 (465)
|. ..........+|++++ +|.+++++++|++++ ++++++.+.+...+.....+.+++.+++..+....-++..++.
T Consensus 276 g~~~~~~~~~~~~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~~~~~g~~~~~~~~~~~aal~~l~~~~~~~~~~~~ 355 (456)
T 2z67_A 276 YYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQ 355 (456)
T ss_dssp HHHHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHhhCCCCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhcCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1111111115677765 698777899999999 5778777755433322222233344444433221124556777
Q ss_pred HHHHHHHHHHHHHHHHcCCCceeeeccceEEEEEe--cCChHHHHHHHHHCCc---eEe------e-----cCCCCEEEE
Q 012363 372 SKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF--DVSATPVVDACRDSGL---LVL------T-----AGKGNVVRL 435 (465)
Q Consensus 372 ~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~i~~--~~~~~~~~~~l~~~Gv---~v~------~-----~~~~~~lRi 435 (465)
.++.+++.+.|+++....+. ....+. .++++.+ +....++.+.|.++|+ -+. . ....+++|+
T Consensus 356 ~~~~~~l~~~L~~~~~~~g~-~v~~~~-~~v~~~~~~~~~~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~~~~~~vr~ 433 (456)
T 2z67_A 356 KNSKKLLDELLNDLSKKTGG-KFLDVE-SPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVM 433 (456)
T ss_dssp HHHHHHHHHHHHHHHHHSSC-CBCCCC-CSSEEEEECSSCHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEE
T ss_pred HHHHHHHHHHHHhcccccCC-EecCCC-CeEEEEEecccHHHHHHHHHHHcCCCcceEEeecCccccccccccCcchhhh
Confidence 77888888888775321121 111222 4455555 3324678999999985 332 0 011368999
Q ss_pred ecCCCCcHHHHHHHHHHHHHHH
Q 012363 436 VPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 436 ~~~~~~t~e~i~~~l~~l~~~l 457 (465)
++++.+|++|+++++++|++++
T Consensus 434 s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 434 NAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp ECCTTCCHHHHHHHHHHHHTC-
T ss_pred hhhcCCCHHHHHHHHHHHHHHh
Confidence 9998999999999999998754
No 213
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.83 E-value=1.4e-18 Score=179.49 Aligned_cols=299 Identities=16% Similarity=0.103 Sum_probs=178.9
Q ss_pred HHHHHHHHHhhcC--CCeEEecCCHHHHHHHHHHHHHHHhh----hcCCCCCCCCceEEEEcCCcccCccccccccCCCC
Q 012363 142 QIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQR----HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH 215 (465)
Q Consensus 142 ~~~la~~l~~~~~--~~~v~~~~sG~eA~~~al~~a~~~t~----~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~ 215 (465)
..++.+++++.++ .+.++|++||+||+..|+++++.+.. ..+... .++..|++.++. |.....+....+...
T Consensus 150 e~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~-~~~~~vl~s~~~-h~s~~~~~~~~g~g~ 227 (515)
T 2jis_A 150 EEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRT-LPPLALFTSKEC-HYSIQKGAAFLGLGT 227 (515)
T ss_dssp HHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGG-SCCEEEEEETTS-CTHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccc-cCCeEEEECCCc-cHHHHHHHHHcCCCC
Confidence 5677888999888 45899999999999999999875321 000000 001256666555 444433332222100
Q ss_pred cCCCCCCCCCCceEeeCC-----CHHHHHhhcCC-----CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Q 012363 216 YRSPFEPVMPGVNFVEYG-----NIEATRKLIQP-----GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVF 285 (465)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~-----~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~ 285 (465)
..+..+|.+ |+++|+++|++ .++++|+++..++..|.+.+ +++|.++|++||+++|+
T Consensus 228 ---------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~----l~~I~~la~~~g~~l~v 294 (515)
T 2jis_A 228 ---------DSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP----LEAIADVCQRHGLWLHV 294 (515)
T ss_dssp ---------GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEE
T ss_pred ---------CcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC----HHHHHHHHHHcCCeEEE
Confidence 022233332 79999999863 14677777776666777665 99999999999999999
Q ss_pred eccccCCCCCCccccccccCC-cccEEEe--cccCCCccceeeEEeCHH--HHhhc----cCCC-Cc----------CCC
Q 012363 286 DEVQCGLGRTGYLWAHEHYGI-FPDIMTL--AKPLAGGLPIGAALVTEK--VASAI----NYGD-HG----------STF 345 (465)
Q Consensus 286 DEv~~g~gr~g~~~~~~~~~~-~pdi~t~--sK~lg~G~~iG~v~~~~~--i~~~~----~~~~-~~----------~t~ 345 (465)
|++|.++......+.....++ .+|++++ +|++++++++|+++++++ +++.. .+.. .. +++
T Consensus 295 D~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~ 374 (515)
T 2jis_A 295 DAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDK 374 (515)
T ss_dssp EETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGG
T ss_pred ehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCC
Confidence 999987644333222223344 6798887 699987788999999866 65531 1110 00 000
Q ss_pred ------CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeee-ccceEEEEEe-cC------Ch-
Q 012363 346 ------AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVR-GLGLIIGIEF-DV------SA- 410 (465)
Q Consensus 346 ------~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~g~~~~i~~-~~------~~- 410 (465)
....+.+.+++.++....-+++.++..++.+++.+.|+ +.+.+..+. .....+.+.+ +. +.
T Consensus 375 ~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~----~~~g~~~~~~~~~~~v~f~~~p~~~~~~~~~~ 450 (515)
T 2jis_A 375 VVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMK----KREGFELVMEPEFVNVCFWFVPPSLRGKQESP 450 (515)
T ss_dssp CSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TSTTEEESSCCSSSEEEEEECCGGGTTCTTST
T ss_pred CCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh----cCCCEEEeCCCCeeEEEEEEeCccccccccch
Confidence 11244444555554321113344555555555555554 444332221 2223344433 11 11
Q ss_pred ----------HHHHHHHHHCCceEee----cCCCCEEEEec-CCCCcHHHHHHHHHHHHHHHHH
Q 012363 411 ----------TPVVDACRDSGLLVLT----AGKGNVVRLVP-PLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 411 ----------~~~~~~l~~~Gv~v~~----~~~~~~lRi~~-~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
..+.+.|.+.|+.+.. .+..+++|+++ +..+|++|+++++++|++++++
T Consensus 451 ~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 451 DYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp THHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 1256778888976532 12236899999 8899999999999999987654
No 214
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.83 E-value=4.2e-19 Score=178.49 Aligned_cols=166 Identities=20% Similarity=0.171 Sum_probs=119.4
Q ss_pred ccCCCCCHHHHHHHHHHHhhcCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccC
Q 012363 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS 212 (465)
Q Consensus 133 ~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~ 212 (465)
.+..++++...+|+++|+++++.+..++++||++|+..+++.+. .+++.||+.+++|++.........
T Consensus 75 ~y~r~~~p~~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~al~-----------~~Gd~Vi~~~~~y~~~~~~~~~~~- 142 (430)
T 3ri6_A 75 VYSRSSNPTVEDLEQRLKNLTGALGVLALGSGMAAISTAILTLA-----------RAGDSVVTTDRLFGHTLSLFQKTL- 142 (430)
T ss_dssp -----CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHC-----------CTTCEEEEETTCCHHHHHHHHTHH-
T ss_pred cccCCCCHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHh-----------CCCCEEEEcCCCchhHHHHHHHHH-
Confidence 34567788899999999999997788889999999999998664 268999999999987654221100
Q ss_pred CCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 012363 213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292 (465)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (465)
......+.+++.+|+++|++++++ ++++|+++..++..|.+.+ +++|.++|++||++||+||+|...
T Consensus 143 --------~~~G~~~~~v~~~d~~~l~~ai~~-~t~~v~~e~p~NptG~~~d----l~~i~~la~~~g~~livD~a~~~~ 209 (430)
T 3ri6_A 143 --------PSFGIEVRFVDVMDSLAVEHACDE-TTKLLFLETISNPQLQVAD----LEALSKVVHAKGIPLVVDTTMTPP 209 (430)
T ss_dssp --------HHTTCEEEEECTTCHHHHHHHCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTSCT
T ss_pred --------HHcCCEEEEeCCCCHHHHHHhhCC-CCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCccc
Confidence 011234566777899999999975 6788888877777777665 899999999999999999998732
Q ss_pred CCCCccccccccCCcccEEEecccCCC-ccce-eeEE
Q 012363 293 GRTGYLWAHEHYGIFPDIMTLAKPLAG-GLPI-GAAL 327 (465)
Q Consensus 293 gr~g~~~~~~~~~~~pdi~t~sK~lg~-G~~i-G~v~ 327 (465)
.......++....+.+++|+++| |..+ |+++
T Consensus 210 ----~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv 242 (430)
T 3ri6_A 210 ----YLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLI 242 (430)
T ss_dssp ----TTCCGGGGTCSEEEEECCCEEETTEEECCEEEE
T ss_pred ----ccCChHHcCCEEEEECCcccccCCCCceEEEEE
Confidence 11122234554445578899987 5444 4444
No 215
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.82 E-value=2.1e-19 Score=179.50 Aligned_cols=302 Identities=12% Similarity=0.008 Sum_probs=179.8
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCC--HHHHHHHHHHHhhcCC---CeEEe-cCCHHHHHHHHHHHHHHHhhhcCCCCCC
Q 012363 115 GDADWIKAVVDQANVLTHVSNMYYS--IPQIELAKRLVACSFA---DRVFF-SNTGTEANEAAIKFARKFQRHSNPDSKE 188 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~--~~~~~la~~l~~~~~~---~~v~~-~~sG~eA~~~al~~a~~~t~~~~~~~~~ 188 (465)
.+|+|++|+.+...........++. +...++++++++.++. ++|++ ++||++|+..+++.+. +
T Consensus 51 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~---~-------- 119 (398)
T 2fyf_A 51 VRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLI---D-------- 119 (398)
T ss_dssp CCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTC---S--------
T ss_pred CCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhc---C--------
Confidence 6788998887631111010112221 2367899999999872 48998 9999999999998764 1
Q ss_pred CCceEEEEcCCcccCccc--cccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCH
Q 012363 189 PATEFVSFTNSFHGRTMG--ALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATK 266 (465)
Q Consensus 189 ~~~~ii~~~~~yhg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~ 266 (465)
++ ++.....+|+.... +.... ....+..++.++-......+++ ++++|++...++.+|.+.+
T Consensus 120 ~g--v~~v~~~~~~~~~~~~~~~~~-----------~g~~~~~v~~~~g~~~~~~i~~-~~~~v~~~~~~nptG~~~~-- 183 (398)
T 2fyf_A 120 KR--SLHLTYGEFSAKFASAVSKNP-----------FVGEPIIITSDPGSAPEPQTDP-SVDVIAWAHNETSTGVAVA-- 183 (398)
T ss_dssp SC--EEEEECSHHHHHHHHHHHHCT-----------TSCCCEEEECCTTCCCCCCCCT-TCSEEEEESEETTTTEECC--
T ss_pred CC--eEEEeCCHHHHHHHHHHHHhC-----------CCCceEEEecCCCCCCCccccC-CCCEEEEeCcCCCcceecc--
Confidence 33 33336666654221 11110 0011122222100000001333 4556655555555566554
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEE--ecccCCCccceeeEEeCHHHHhhccC------
Q 012363 267 EFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTEKVASAINY------ 338 (465)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~~i~~~~~~------ 338 (465)
+++|.++ +|+++|+||+|+.+... .... .+|+++ ++|.++++.++|++++++++++.+..
T Consensus 184 --~~~i~~~---~~~~vivD~a~~~~~~~---~~~~----~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~~ 251 (398)
T 2fyf_A 184 --VRRPEGS---DDALVVIDATSGAGGLP---VDIA----ETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGR 251 (398)
T ss_dssp --CCCCTTC---C-CEEEEECTTTTTTSC---CCGG----GCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTTC
T ss_pred --hHHhhhh---cCCeEEEEeccccCCcc---cCcc----cCcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccCC
Confidence 3444444 89999999999854321 1111 257765 45999865468999999998776521
Q ss_pred ----CC----------CcCC-CCChHHHHHHHHHHHHHhcCc----hHHHHHHHHHHHHHHHHHHHHHcCCCceee---e
Q 012363 339 ----GD----------HGST-FAGSPLVCNAAIAVLDKISNP----AFLASVSKKGHYFKETLKQKLARNPHVKDV---R 396 (465)
Q Consensus 339 ----~~----------~~~t-~~~~~~~~~aa~a~L~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---~ 396 (465)
.. ...+ ++.+..+++++.++|+.+.+. ...++.+++.+++.+.|++ .+.+... +
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~----~~g~~~~~~~~ 327 (398)
T 2fyf_A 252 WVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQE----RPYTTPFVTDP 327 (398)
T ss_dssp CCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHH----STTEEESCCSG
T ss_pred CCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH----cCCceeccCCh
Confidence 00 0122 345667777888888765433 3344455555555555543 4322222 1
Q ss_pred -ccce-EEEEEec--CChHHHHHHHHHCCceEeecCC---CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012363 397 -GLGL-IIGIEFD--VSATPVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 397 -~~g~-~~~i~~~--~~~~~~~~~l~~~Gv~v~~~~~---~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
+.+. ++++.++ .+..++.+.|.++||.+.++.. ++++|++++...|++|+++++++|++++++
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 328 GLRSQVVGTIDFVDDVDAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDWVVER 397 (398)
T ss_dssp GGBCSSEEEEEECTTSCHHHHHHHHHHTTCBCCSCCTTTCSSEEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred hhcCCcEEEEECCCCCCHHHHHHHHHHCCcEEecCcccCCCCEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 1234 7888873 3577899999999999976421 378999999888999999999999998764
No 216
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.82 E-value=4.3e-19 Score=178.50 Aligned_cols=285 Identities=16% Similarity=0.089 Sum_probs=181.8
Q ss_pred CCHHHHHHHHHHHhhc---cc-ccCCCCCHHHHHHHHHHHhhcCCCeEEe---cCCHHHHHHHHHHHHHHHhhhcCCCCC
Q 012363 115 GDADWIKAVVDQANVL---TH-VSNMYYSIPQIELAKRLVACSFADRVFF---SNTGTEANEAAIKFARKFQRHSNPDSK 187 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~---~~-~~~~~~~~~~~~la~~l~~~~~~~~v~~---~~sG~eA~~~al~~a~~~t~~~~~~~~ 187 (465)
++++|.+|+.++.... .. ....|+.....++++++++.++.+...+ ++||++|+..+++.+.
T Consensus 36 n~~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~----------- 104 (431)
T 3ht4_A 36 NQFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGIL----------- 104 (431)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTC-----------
T ss_pred HHHHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhC-----------
Confidence 5678888887753211 11 1223556778899999999998665444 5699999999988554
Q ss_pred CCCceEEEEc-CCcccCccccccccCCCCcCCCCCCCCCCceEeeC-----CCHHHHHhhcCCCCeEEEEEcccCCCCCc
Q 012363 188 EPATEFVSFT-NSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAVFVEPIQGEGGI 261 (465)
Q Consensus 188 ~~~~~ii~~~-~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~a~vi~ep~~~~~G~ 261 (465)
.++++|++.+ +.|.+ +...+.+++. +...+......+.+++. .|+++|++++++ ++++|++++..++.+.
T Consensus 105 ~~Gd~Vl~~~~~~y~~-~~~~~~l~g~--~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~~-~tk~V~i~~sp~np~~ 180 (431)
T 3ht4_A 105 RPGDELLYITGKPYDT-LEEIVGVRGK--GVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHS-NTKMIGIQRSKGYATR 180 (431)
T ss_dssp CTTCEEEECSSSCCTT-HHHHTTSSSC--SSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCCT-TEEEEEEECSCTTSSS
T ss_pred CCCCEEEEeCCCCchh-HHHHHhhccc--ccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcCC-CCeEEEEECCCCCCCC
Confidence 1688999998 66644 4433333221 11112222334445555 389999999975 6788888864433333
Q ss_pred ccCCHHHHHHHHHHHHH--hCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCCc--cceeeEEeCHHHHhhcc
Q 012363 262 YSATKEFLQFLRDACDD--AGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG--LPIGAALVTEKVASAIN 337 (465)
Q Consensus 262 ~~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~G--~~iG~v~~~~~i~~~~~ 337 (465)
...+.+.+++|+++|++ ||++||+||+|.++....... .++....+.+++|.++|| .+.|++++++++++.+.
T Consensus 181 ~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~---~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~ 257 (431)
T 3ht4_A 181 PSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPC---HVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACA 257 (431)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGG---GTTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCcc---ccCCeEEEcCccccCCCCCCCceEEEEecHHHHHHHH
Confidence 45688889999999999 999999999998775433322 224434445789999874 67799999999888774
Q ss_pred CC----CCcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHc-CCCceeeeccceEEEEEec--CCh
Q 012363 338 YG----DHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLAR-NPHVKDVRGLGLIIGIEFD--VSA 410 (465)
Q Consensus 338 ~~----~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~g~~~~i~~~--~~~ 410 (465)
.. ..+.+.+.++..+.++...++.+ +...++..++..++.+.|+++... +|. ...++.+.++.+.++ ...
T Consensus 258 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~a~~l~~~L~~~g~~v~p~-~~~~~~~li~~i~l~~~~~~ 334 (431)
T 3ht4_A 258 YRLTSPGIGAEAGASLYSLQEMYQGFFLA--PHVAGQALKGAIFTAAFLEKLGMNTSPA-WNAPRTDLIQSVQFDDKDRM 334 (431)
T ss_dssp HHHSCTTTTTSCSCCCSCSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTCCEESC-TTSCCSSSCCEEECCCHHHH
T ss_pred HHhccCCcccccCccHHHHHHHHhHhhhH--HHHHHHHHHHHHHHHHHHHhCcCEecCC-CCCCCccEEEEEEeCCHHHH
Confidence 31 12222222222233344455433 456677788888888888776211 121 123345568888884 234
Q ss_pred HHHHHHHHHC
Q 012363 411 TPVVDACRDS 420 (465)
Q Consensus 411 ~~~~~~l~~~ 420 (465)
.++++.|.+.
T Consensus 335 ~~~~~~l~~~ 344 (431)
T 3ht4_A 335 IAFCQAIQYA 344 (431)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 5688888875
No 217
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.81 E-value=6.9e-19 Score=180.13 Aligned_cols=313 Identities=15% Similarity=0.096 Sum_probs=187.1
Q ss_pred CCHHHHHHHHHHHhhcc-ccc---CCC-CCHH----HHHHHHHHHhhcCCC-----eEEecCCHHHHHHHHHHHHHHHhh
Q 012363 115 GDADWIKAVVDQANVLT-HVS---NMY-YSIP----QIELAKRLVACSFAD-----RVFFSNTGTEANEAAIKFARKFQR 180 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~-~~~---~~~-~~~~----~~~la~~l~~~~~~~-----~v~~~~sG~eA~~~al~~a~~~t~ 180 (465)
.+|.|++|+.+.+.... .++ ..+ ..+. +..++++++++++.+ .-+.++||++|+..++..+.
T Consensus 56 ~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~all---- 131 (483)
T 1rv3_A 56 ASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALV---- 131 (483)
T ss_dssp CCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHT----
T ss_pred CCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcHHHHHHHHHHhc----
Confidence 57999999998876521 011 111 2222 445558888888833 22445556699988887654
Q ss_pred hcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeC--------CCHHHHHhhcCCCCeEEEEE
Q 012363 181 HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY--------GNIEATRKLIQPGKTAAVFV 252 (465)
Q Consensus 181 ~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~d~~~le~~l~~~~~a~vi~ 252 (465)
.++|+|++.++.|+++.......... ... + ....+..+++ -|+++|+++++..++++|++
T Consensus 132 -------~pGD~Vl~~~~~~~~~~~~~~~~~~~-~v~--~--~G~~~~~v~~~~~~~~~~iD~d~le~~i~~~~tklIi~ 199 (483)
T 1rv3_A 132 -------EPHGRIMGLDLPDGGHLTHGFMTDKK-KIS--A--TSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIA 199 (483)
T ss_dssp -------CTTCEEEEECGGGTCCGGGCCBCSSC-BCS--H--HHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEE
T ss_pred -------CCCCEEEEecCccCcCcchhhhhccc-Ccc--c--ccceEEEEECccccCCCcCCHHHHHHHHhhcCCcEEEE
Confidence 26899999999887765322110000 000 0 0000111111 28999999997235667777
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CCCCCCc-cccccccCCcccEEE--ecccCCCccceeeEEe
Q 012363 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-GLGRTGY-LWAHEHYGIFPDIMT--LAKPLAGGLPIGAALV 328 (465)
Q Consensus 253 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~gr~g~-~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~ 328 (465)
..++.+ .+.+ +++|+++|++||++||+|++|. |+...|. ...+. ..|+++ ++|+|+ |+|.|++++
T Consensus 200 -~~sn~~-~~~d----l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~----~~div~~s~~K~l~-GprgG~i~~ 268 (483)
T 1rv3_A 200 -GTSCYS-RNLD----YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE----HCHVVTTTTHKTLR-GCRAGMIFY 268 (483)
T ss_dssp -CCSSCC-SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG----TCSEEEEESSGGGC-CCSCEEEEE
T ss_pred -eCCcCC-CcCC----HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC----CCcEEEecCcccCC-CCCceEEEE
Confidence 333333 3433 8999999999999999999976 3211121 01111 246664 569985 568899998
Q ss_pred CHH---------------HHhhccCCCCcC-CCCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcC
Q 012363 329 TEK---------------VASAINYGDHGS-TFAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARN 389 (465)
Q Consensus 329 ~~~---------------i~~~~~~~~~~~-t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~ 389 (465)
+++ +.+.+....... ..+.+...+++..++++.+.+ +++.+++.++.+++.+.|.+.
T Consensus 269 ~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---- 344 (483)
T 1rv3_A 269 RRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL---- 344 (483)
T ss_dssp ECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred cchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhc----
Confidence 874 222222110111 112334455555667776543 345566666777776666553
Q ss_pred CCceeeec-c-ceEEEEEec---CChHHHHHHHHHCCceEe----ecC----CCCEEEEecCCCCc----HHHHHHHHHH
Q 012363 390 PHVKDVRG-L-GLIIGIEFD---VSATPVVDACRDSGLLVL----TAG----KGNVVRLVPPLIIS----EQELDQAVEI 452 (465)
Q Consensus 390 ~~~~~~~~-~-g~~~~i~~~---~~~~~~~~~l~~~Gv~v~----~~~----~~~~lRi~~~~~~t----~e~i~~~l~~ 452 (465)
+. ..+.+ . ..++++.+. .+..++.+.|.+.||.+. |+. ..+.+||+++..+| ++|+++++++
T Consensus 345 g~-~~~~~~~~~~~~~v~~~~~g~~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~~~~~ 423 (483)
T 1rv3_A 345 GY-KIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHF 423 (483)
T ss_dssp TC-EEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHH
T ss_pred CC-EeccCCCCCceEEEeccCCCCCHHHHHHHHHhCCcEEecCCCCCCCcCCCCceEEeecCCcccCCCCHHHHHHHHHH
Confidence 32 11222 1 245667763 356778888889999998 642 13689999886666 9999999999
Q ss_pred HHHHHHH
Q 012363 453 LCKTLPV 459 (465)
Q Consensus 453 l~~~l~~ 459 (465)
|.++++.
T Consensus 424 l~~~l~~ 430 (483)
T 1rv3_A 424 IHRGIEL 430 (483)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998876
No 218
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.81 E-value=1.8e-18 Score=171.38 Aligned_cols=310 Identities=14% Similarity=0.092 Sum_probs=194.9
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHH-HhhcC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCce
Q 012363 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRL-VACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l-~~~~~-~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ 192 (465)
.+|++++++.+.++..... ...+...++++++ +++++ .+.+++++||++|+..+++.+. . .++|+
T Consensus 14 ~~~~i~~a~~~~~~~~~~~---~~~~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l~--~--------~~Gd~ 80 (377)
T 3ju7_A 14 PVIEYLDELKEIDASHIYT---NYGPINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLKK--R--------KKGKY 80 (377)
T ss_dssp CGGGGHHHHHHHHHHTCCS---SSCHHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHHS--C--------TTCCE
T ss_pred CcHHHHHHHHHHHHcCCcc---cCCHHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHcC--C--------CCcCE
Confidence 4578899999988764221 1245678999999 99999 8899999999999999988651 1 16899
Q ss_pred EEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhc-CCC-CeEEEEEcccCCCCCcccCCHHHHH
Q 012363 193 FVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI-QPG-KTAAVFVEPIQGEGGIYSATKEFLQ 270 (465)
Q Consensus 193 ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l-~~~-~~a~vi~ep~~~~~G~~~~~~~~l~ 270 (465)
||+.+++|++....+...+..+.+. +..++.. .-|++++++++ +++ ++++|+ |+++ .|...+ ++
T Consensus 81 Vi~~~~~~~~~~~~~~~~G~~~~~v----~~~~~~~---~~d~~~l~~~i~~~~~~tk~v~--~~~~-~G~~~~----~~ 146 (377)
T 3ju7_A 81 ALMPSFTFPATPLAAIWCGLEPYFI----DISIDDW---YMDKTVLWDKIEELKEEVAIVV--PYAT-FGSWMN----LE 146 (377)
T ss_dssp EEEESSSCTHHHHHHHHTTCEEEEE----CBCTTTC---SBCHHHHHHHHHHHGGGEEEEC--CBCG-GGBCCC----CH
T ss_pred EEECCCCcHHHHHHHHHcCCEEEEE----ecCCccC---CcCHHHHHHHHhcCCCCceEEE--EECC-CCCccC----HH
Confidence 9999999987665443333222211 1111100 01899999988 332 266666 4443 354444 78
Q ss_pred HHHHHHHHhCCEEEEeccccCCCCCCcccccccc-CCcccEEEec----ccCCCccceeeEEeC-HHHHhhccCCC----
Q 012363 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHY-GIFPDIMTLA----KPLAGGLPIGAALVT-EKVASAINYGD---- 340 (465)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~-~~~pdi~t~s----K~lg~G~~iG~v~~~-~~i~~~~~~~~---- 340 (465)
+|.++|+ ||++||+|++|+ +|.. +..... +...|+.++| |.+++| ..|+++.+ +++.+.+....
T Consensus 147 ~i~~la~-~~~~vi~D~a~a-~g~~---~~~~~~g~~~~d~~~~S~~~~K~l~~g-~gG~~~~~~~~l~~~~~~~~~~g~ 220 (377)
T 3ju7_A 147 EYEELEK-KGVPVVVDAAPG-FGLM---NGGMHYGQDFSGMIIYSFHATKPFGIG-EGGLIYSKNEEDIQRIKRMGNFGF 220 (377)
T ss_dssp HHHHHHH-TTCCBEEECTTC-TTCE---ETTEETTTTCSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHTBTTB
T ss_pred HHHHHHh-cCCEEEEECCCc-cCCe---ECCEeccCCCCcEEEEECCCCCcCCCC-CcEEEEECCHHHHHHHHHHHhcCC
Confidence 9999999 999999999997 4321 111112 1123555544 999875 56777764 56665543211
Q ss_pred --------CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHc-CCCcee--eeccceEEEEEecC-
Q 012363 341 --------HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLAR-NPHVKD--VRGLGLIIGIEFDV- 408 (465)
Q Consensus 341 --------~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~--~~~~g~~~~i~~~~- 408 (465)
.+..+..+++.++.+++.++.+ +...++.+++.+++.+.|.++..- .+.... ......++.+.++.
T Consensus 221 ~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T 3ju7_A 221 DTNRECTMMGFNCKMSEYAAAIGIATMKKW--DDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPEE 298 (377)
T ss_dssp CTTSCBCSSCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCTT
T ss_pred CCCCceeeccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCCh
Confidence 1234556777777777777643 445666677777777776653100 111100 01112233444432
Q ss_pred -ChHHHHHHHHHCCceEeecCC------------------------CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012363 409 -SATPVVDACRDSGLLVLTAGK------------------------GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 409 -~~~~~~~~l~~~Gv~v~~~~~------------------------~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
...++.+.|.++||.+..... .+.+|+.+....|++|++.+++.|++++..
T Consensus 299 ~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~ 374 (377)
T 3ju7_A 299 VRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVS 374 (377)
T ss_dssp SCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC----
T ss_pred hhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 367899999999998764210 135888888888999999999999887754
No 219
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.78 E-value=4e-18 Score=173.37 Aligned_cols=315 Identities=14% Similarity=0.105 Sum_probs=177.6
Q ss_pred CCHHHHHHHHHHHhh-ccccc--CC--CCCHH----HHHHHHHHHhhcCCCe-----EEecCCHHHHHHHHHHHHHHHhh
Q 012363 115 GDADWIKAVVDQANV-LTHVS--NM--YYSIP----QIELAKRLVACSFADR-----VFFSNTGTEANEAAIKFARKFQR 180 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~-~~~~~--~~--~~~~~----~~~la~~l~~~~~~~~-----v~~~~sG~eA~~~al~~a~~~t~ 180 (465)
.+|+|++|+...+.. +..++ .. ...+. +...+++++++++.+. .++++||++||..++..+.
T Consensus 66 ~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~---- 141 (490)
T 2a7v_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL---- 141 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHc----
Confidence 579999999887754 21111 11 11121 2234488999998443 4567799999999998664
Q ss_pred hcCCCCCCCCceEEEEcCCcccCcccc-------ccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEc
Q 012363 181 HSNPDSKEPATEFVSFTNSFHGRTMGA-------LALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE 253 (465)
Q Consensus 181 ~~~~~~~~~~~~ii~~~~~yhg~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~e 253 (465)
.++|+|++.++.|.|+.... ...++.. +.....+..+... ..|+++|+++++..++++|++.
T Consensus 142 -------~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~-~~~~~~~vd~~~~---~iD~d~le~~l~~~~~klIi~~ 210 (490)
T 2a7v_A 142 -------QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIF-FESMPYKLNPKTG---LIDYNQLALTARLFRPRLIIAG 210 (490)
T ss_dssp -------CSCEECCC--------------------------------CCBCTTTC---SBCHHHHHHHHHHHCCSEEEEC
T ss_pred -------CCCCEecccCccccccccchhhhcchhHHHcCCe-EEEEecccccccC---CcCHHHHHHHHhhcCCcEEEEc
Confidence 27999999998875543211 1122211 0000001111110 1389999999863234566654
Q ss_pred -ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CCCCCCc-cccccccCCcccEE--EecccCCCccceeeEEe
Q 012363 254 -PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-GLGRTGY-LWAHEHYGIFPDIM--TLAKPLAGGLPIGAALV 328 (465)
Q Consensus 254 -p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~gr~g~-~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~ 328 (465)
|.++. ..+ +++|+++|++||++|++|++|. |+...|. ...+. + .|++ +++|+++ |.+.|++++
T Consensus 211 ~s~~~~---~~d----l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~--~--aDiv~~S~hK~l~-Gp~GG~i~~ 278 (490)
T 2a7v_A 211 TSAYAR---LID----YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK--H--ADIVTTTTHKTLR-GARSGLIFY 278 (490)
T ss_dssp CSSCCS---CCC----HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG--T--CSEEEEESSGGGC-SCSCEEEEE
T ss_pred CCCCCC---ccc----HHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC--C--CCEEEECCcccCc-cccchheee
Confidence 34432 223 8999999999999999999975 3211221 11111 2 4665 5679995 457799988
Q ss_pred CHH---------------HHhhccCCCCcCCCC-ChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcC
Q 012363 329 TEK---------------VASAINYGDHGSTFA-GSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARN 389 (465)
Q Consensus 329 ~~~---------------i~~~~~~~~~~~t~~-~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~ 389 (465)
+++ +.+.++.....++.+ .++..++|..+++..... +++.+++.++.+++++.|.+. .+
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~--G~ 356 (490)
T 2a7v_A 279 RKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER--GY 356 (490)
T ss_dssp ECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--TC
T ss_pred ccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc--Cc
Confidence 764 223333211222222 244445555556655433 456677788888888888763 22
Q ss_pred CCceeeeccceEEEEEec---CChHHHHHHHHHCCceEeec----C----CCCEEEEecC----CCCcHHHHHHHHHHHH
Q 012363 390 PHVKDVRGLGLIIGIEFD---VSATPVVDACRDSGLLVLTA----G----KGNVVRLVPP----LIISEQELDQAVEILC 454 (465)
Q Consensus 390 ~~~~~~~~~g~~~~i~~~---~~~~~~~~~l~~~Gv~v~~~----~----~~~~lRi~~~----~~~t~e~i~~~l~~l~ 454 (465)
..+.. .....++++++. .+..++.+.|.+.||.+... . .+..+|+..+ ..++++|++++++.|.
T Consensus 357 ~v~~~-~t~t~lv~vdl~~~g~~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~ 435 (490)
T 2a7v_A 357 SLVSG-GTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFID 435 (490)
T ss_dssp EEGGG-SCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHH
T ss_pred EEecC-CCCCeEEEEEeCCCCCCHHHHHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHH
Confidence 21110 112356777763 24677888888999998742 1 1356999654 3578999999999999
Q ss_pred HHHHH
Q 012363 455 KTLPV 459 (465)
Q Consensus 455 ~~l~~ 459 (465)
+++..
T Consensus 436 ~~l~~ 440 (490)
T 2a7v_A 436 EGVNI 440 (490)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98864
No 220
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.77 E-value=2.8e-17 Score=169.27 Aligned_cols=299 Identities=15% Similarity=0.049 Sum_probs=172.6
Q ss_pred HHHHHHHHHhhcCC----CeEEecCCHHHHHHHHHHHHHHHh----hhcCCCCCCCCceEEEEcCCcccCccccccccCC
Q 012363 142 QIELAKRLVACSFA----DRVFFSNTGTEANEAAIKFARKFQ----RHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (465)
Q Consensus 142 ~~~la~~l~~~~~~----~~v~~~~sG~eA~~~al~~a~~~t----~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (465)
+.++++++++.++. +.++|++||++|+..|+.+++... ...+-. ..+++.|++.+.+|+... .+....+.
T Consensus 137 e~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~-~~~~~~v~~s~~~H~s~~-~~~~~~g~ 214 (511)
T 3vp6_A 137 EQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMA-AVPKLVLFTSEQSHYSIK-KAGAALGF 214 (511)
T ss_dssp HHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGG-GSCCEEEEEETTSCTHHH-HHHHHTTS
T ss_pred HHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcc-cCCCeEEEECCCchHHHH-HHHHHcCC
Confidence 56677778888772 489999999999999999887531 000000 002455666666554443 33322221
Q ss_pred CCcCCCCCCCCCCceEeeCC-----CHHHHHhhcCCC-----CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEE
Q 012363 214 EHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPG-----KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALL 283 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~-----~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~ll 283 (465)
.. ..+..+|.+ |+++|+++|++. .+.+|+++..++..|.+.+ +++|.++|++||+++
T Consensus 215 g~---------~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~----l~~I~~ia~~~~~~l 281 (511)
T 3vp6_A 215 GT---------DNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADICEKYNLWL 281 (511)
T ss_dssp CG---------GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCC----HHHHHHHHHHHTCEE
T ss_pred CC---------CcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccccc----HHHHHHHHHHcCCEE
Confidence 00 012222322 899999999632 2667777766666677655 999999999999999
Q ss_pred EEeccccCCCCCCccccccccCC-cccEEEe--cccCCCccceeeEEeCH-HHHhhc-c--CCCC---c-----------
Q 012363 284 VFDEVQCGLGRTGYLWAHEHYGI-FPDIMTL--AKPLAGGLPIGAALVTE-KVASAI-N--YGDH---G----------- 342 (465)
Q Consensus 284 I~DEv~~g~gr~g~~~~~~~~~~-~pdi~t~--sK~lg~G~~iG~v~~~~-~i~~~~-~--~~~~---~----------- 342 (465)
++|++|.+.......+.....++ ..|++++ +|++++...+|+++.++ +++... . +... .
T Consensus 282 hvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~ 361 (511)
T 3vp6_A 282 HVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGD 361 (511)
T ss_dssp EEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGG
T ss_pred EEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCcccccccccCccC
Confidence 99999986422111111111232 4577765 59998777788888764 344332 1 1100 0
Q ss_pred CCC----CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeee---ccceEEEEEe-cCC-----
Q 012363 343 STF----AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVR---GLGLIIGIEF-DVS----- 409 (465)
Q Consensus 343 ~t~----~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~g~~~~i~~-~~~----- 409 (465)
.+. ....+.+.+++..+..-.-+++.++..++.+++++.|+ +.|.+..+. ....++.+.+ +..
T Consensus 362 ~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~----~~pg~~l~~~~~p~~~~v~f~~~p~~~~~~~ 437 (511)
T 3vp6_A 362 KAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIK----NREEFEMVFNGEPEHTNVCFWYIPQSLRGVP 437 (511)
T ss_dssp GSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----SCTTEEESSSSCCSSSCEEEEECCGGGSSCC
T ss_pred CCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh----cCCCEEEEecCCCCeEEEEEEEeCccccccc
Confidence 000 11234444444433211113455555566666655554 444333222 3344455543 110
Q ss_pred ------------hHHHHHHHHHCCceEeec---CC-CCEEEEec-CCCCcHHHHHHHHHHHHHHHHH
Q 012363 410 ------------ATPVVDACRDSGLLVLTA---GK-GNVVRLVP-PLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 410 ------------~~~~~~~l~~~Gv~v~~~---~~-~~~lRi~~-~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
..++.+.|+++|+++... +. .+++|+++ +..++++||+.+++.|++.-+.
T Consensus 438 ~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~ 504 (511)
T 3vp6_A 438 DSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQD 504 (511)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred cchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 235888899999765431 11 14699988 6788999999999999876544
No 221
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.77 E-value=3.3e-17 Score=167.91 Aligned_cols=324 Identities=12% Similarity=0.033 Sum_probs=180.5
Q ss_pred HHHHHHHHHhhcccccCCC--CCHHHHHHHHHHHhhcCCC-----------eEEecCCHHHHHHHHHHHHHHHh-hhcCC
Q 012363 119 WIKAVVDQANVLTHVSNMY--YSIPQIELAKRLVACSFAD-----------RVFFSNTGTEANEAAIKFARKFQ-RHSNP 184 (465)
Q Consensus 119 v~~a~~~~~~~~~~~~~~~--~~~~~~~la~~l~~~~~~~-----------~v~~~~sG~eA~~~al~~a~~~t-~~~~~ 184 (465)
+.+++...+......+... ....+.++++++++.++.+ .+++|+|||||+..++..++... ....+
T Consensus 90 ~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~ 169 (486)
T 1js3_A 90 LADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQA 169 (486)
T ss_dssp HHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhc
Confidence 5566666654322111111 1122556777788887732 58999999999999998876431 10000
Q ss_pred CCCCCC--------ce--EEEEcCCcccCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCC------eE
Q 012363 185 DSKEPA--------TE--FVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGK------TA 248 (465)
Q Consensus 185 ~~~~~~--------~~--ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~------~a 248 (465)
. .+ ++ |++.+++|+.+...+...+.... . .+...+.. -|+++|+++|+++. +.
T Consensus 170 ~---~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~-~---v~~d~~~~----~d~~~L~~~i~~~~~~g~~p~~ 238 (486)
T 1js3_A 170 A---SPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLK-A---IPSDGKFA----MRASALQEALERDKAAGLIPFF 238 (486)
T ss_dssp H---STTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEE-E---ECCCTTSC----CCHHHHHHHHHHHHHTTCEEEE
T ss_pred c---CccchhcccCCCEEEEECCCCcHHHHHHHHhCCCceE-E---eecCCCCC----CCHHHHHHHHHHHHhCCCCceE
Confidence 0 01 23 56677776654433322221111 1 11111111 28999999996322 23
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCC-cccEEEe--cccCCCccceee
Q 012363 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI-FPDIMTL--AKPLAGGLPIGA 325 (465)
Q Consensus 249 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~-~pdi~t~--sK~lg~G~~iG~ 325 (465)
++++.|. +..|.+.+ +++|.++|++||+++++|++|.++......+.....++ ..|.+++ +|.+++++++|+
T Consensus 239 vv~~~~~-n~tG~~~~----l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~ 313 (486)
T 1js3_A 239 VVATLGT-TSCCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSA 313 (486)
T ss_dssp EEEEBSC-TTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEE
T ss_pred EEEeCCC-CCCCCCCC----HHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcceEE
Confidence 4444444 44455544 99999999999999999999976422111111101122 3577765 599887789999
Q ss_pred EEeCHH--HHhhccC--CCC-c-----------------CCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Q 012363 326 ALVTEK--VASAINY--GDH-G-----------------STFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLK 383 (465)
Q Consensus 326 v~~~~~--i~~~~~~--~~~-~-----------------~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~ 383 (465)
++++++ +.+.+.. ... . .+.....+.+.+++..+..-.-+++.++..++.+++.+.|+
T Consensus 314 l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~ 393 (486)
T 1js3_A 314 MWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVL 393 (486)
T ss_dssp EEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 998754 2444421 000 0 00112344444444443211113344455555555555554
Q ss_pred HHHHcCCCceee-eccceEEEEEecCC---hHHHHHHHHHCCceEeec---CCCCEEEEec-CCCCcHHHHHHHHHHHHH
Q 012363 384 QKLARNPHVKDV-RGLGLIIGIEFDVS---ATPVVDACRDSGLLVLTA---GKGNVVRLVP-PLIISEQELDQAVEILCK 455 (465)
Q Consensus 384 ~~~~~~~~~~~~-~~~g~~~~i~~~~~---~~~~~~~l~~~Gv~v~~~---~~~~~lRi~~-~~~~t~e~i~~~l~~l~~ 455 (465)
+ .|.+..+ +..+.++.+.+... ..++.+.|.++|+++... +...++|+++ +...|++++++++++|++
T Consensus 394 ~----~~~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~ 469 (486)
T 1js3_A 394 Q----DPRFEVCAEVTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRG 469 (486)
T ss_dssp H----CTTEEECSCCCSSEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred c----CCCeEEeCCCceeEEEEEecChHHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 4 4433322 23455666666321 467888898888654322 1126799986 455789999999999999
Q ss_pred HHHHhhh
Q 012363 456 TLPVLDS 462 (465)
Q Consensus 456 ~l~~~~~ 462 (465)
+++++.+
T Consensus 470 ~~~~~~~ 476 (486)
T 1js3_A 470 LAAELLA 476 (486)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9887654
No 222
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.75 E-value=2.1e-16 Score=161.68 Aligned_cols=304 Identities=14% Similarity=0.086 Sum_probs=173.6
Q ss_pred HHHHHHHHHhhcCC------------CeEEecCCHHHHHHHHHHHHHHHhhhc----CCCC----CCCCceEEEEcCCcc
Q 012363 142 QIELAKRLVACSFA------------DRVFFSNTGTEANEAAIKFARKFQRHS----NPDS----KEPATEFVSFTNSFH 201 (465)
Q Consensus 142 ~~~la~~l~~~~~~------------~~v~~~~sG~eA~~~al~~a~~~t~~~----~~~~----~~~~~~ii~~~~~yh 201 (465)
+.++.+++++.++. ...+|++|||+||..|+.+++...... ++.- ..++..|++.+.+++
T Consensus 120 E~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~ 199 (481)
T 4e1o_A 120 EMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHS 199 (481)
T ss_dssp HHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCH
T ss_pred HHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchH
Confidence 55666777777762 267899999999999999988643100 0000 002445555555544
Q ss_pred cCccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCC-----CeEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q 012363 202 GRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG-----KTAAVFVEPIQGEGGIYSATKEFLQFLRDAC 276 (465)
Q Consensus 202 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-----~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~ 276 (465)
. ...+..+.+..... .+...+.. -|+++|+++|++. .+.+|++...+++.|.+.+ +++|.++|
T Consensus 200 s-~~~~~~~~g~~~~~---v~~~~~~~----~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~----l~~I~~la 267 (481)
T 4e1o_A 200 S-VEKAGLISLVKMKF---LPVDDNFS----LRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDC----LSELGPIC 267 (481)
T ss_dssp H-HHHHHHHHTCEEEE---ECCCTTSC----CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHH
T ss_pred H-HHHHHHhCCCceEE---EEcCCCCc----CCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCC----HHHHHHHH
Confidence 4 33333333221111 11111111 2899999999622 1455555555556676655 99999999
Q ss_pred HHhCCEEEEeccccCCCCCCccccccccCC-cccEEEe--cccCCCccceeeEEeCH-HHH-hhccCC--C--C---c--
Q 012363 277 DDAGALLVFDEVQCGLGRTGYLWAHEHYGI-FPDIMTL--AKPLAGGLPIGAALVTE-KVA-SAINYG--D--H---G-- 342 (465)
Q Consensus 277 ~~~g~llI~DEv~~g~gr~g~~~~~~~~~~-~pdi~t~--sK~lg~G~~iG~v~~~~-~i~-~~~~~~--~--~---~-- 342 (465)
++||+++++|++|.+....+..+.....++ ..|.+++ .|++++....|+++.++ +.. +.+... . . .
T Consensus 268 ~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~ 347 (481)
T 4e1o_A 268 AREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVA 347 (481)
T ss_dssp HHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCCTTTTTS
T ss_pred HHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccCcccCCC
Confidence 999999999999976422222111111233 3587776 59998777778887764 332 222110 0 0 0
Q ss_pred ---------CCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceee-eccceEEEEEecC---C
Q 012363 343 ---------STFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDV-RGLGLIIGIEFDV---S 409 (465)
Q Consensus 343 ---------~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~i~~~~---~ 409 (465)
.+.....+.+.+++..+..-.-+++.++..++.+++++.| .+.|.+..+ +....++++.+.. .
T Consensus 348 ~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L----~~~~g~~~~~~~~~~~v~f~~~~~~~~ 423 (481)
T 4e1o_A 348 TDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLV----RNDPSFEIPAKRHLGLVVFRLKGPNSL 423 (481)
T ss_dssp CCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTCTTEECCSCCCSSEEEEEESSCHHH
T ss_pred CCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----hcCCCeEEecCCceeEEEEEeCCchHH
Confidence 0111134444554444432111334455555555555555 444433222 2334566666632 2
Q ss_pred hHHHHHHHHHCCce-EeecC--CCCEEEEecC-CCCcHHHHHHHHHHHHHHHHHhh
Q 012363 410 ATPVVDACRDSGLL-VLTAG--KGNVVRLVPP-LIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 410 ~~~~~~~l~~~Gv~-v~~~~--~~~~lRi~~~-~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
..++.+.|.++|++ +.+.. ...++|+++. ...|++||++++++|+++++++.
T Consensus 424 ~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l~ 479 (481)
T 4e1o_A 424 TENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATLIL 479 (481)
T ss_dssp HHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 46788889988854 44321 1257999865 44589999999999999988764
No 223
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.75 E-value=1.4e-16 Score=162.63 Aligned_cols=304 Identities=11% Similarity=-0.003 Sum_probs=171.4
Q ss_pred HHHHHHHHHhhcCCC-----------eEEecCCHHHHHHHHHHHHHHHhhhc----CCCC----CCCCceEEEEcCCccc
Q 012363 142 QIELAKRLVACSFAD-----------RVFFSNTGTEANEAAIKFARKFQRHS----NPDS----KEPATEFVSFTNSFHG 202 (465)
Q Consensus 142 ~~~la~~l~~~~~~~-----------~v~~~~sG~eA~~~al~~a~~~t~~~----~~~~----~~~~~~ii~~~~~yhg 202 (465)
+.++.+++++.+|.+ ..+||+|||+||..|+.+++...... ++.- ..++..|++.+.+++
T Consensus 115 E~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~- 193 (475)
T 3k40_A 115 EVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHS- 193 (475)
T ss_dssp HHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCH-
T ss_pred HHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchH-
Confidence 556667778887732 68999999999999999987543100 0000 001234555555544
Q ss_pred CccccccccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCC-----CeEEEEEcccCCCCCcccCCHHHHHHHHHHHH
Q 012363 203 RTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG-----KTAAVFVEPIQGEGGIYSATKEFLQFLRDACD 277 (465)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-----~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~ 277 (465)
+...+....+..... .+...+. -|+++|+++|++. .+.+|++....++.|.+.+ +++|.++|+
T Consensus 194 s~~~~~~~~g~~~~~---v~~d~~~-----~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~----l~~I~~la~ 261 (475)
T 3k40_A 194 SVERAGLLGGVKLRS---VQSENHR-----MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY----LDECGPVGN 261 (475)
T ss_dssp HHHHHHHHHTCEEEE---ECCBTTB-----CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHH
T ss_pred HHHHHHHHcCCceEE---EECCCCC-----cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC----HHHHHHHHH
Confidence 443333333221111 1111111 2899999999632 1444555544555666655 999999999
Q ss_pred HhCCEEEEeccccCCCCCCccccccccCC-cccEEEec--ccCCCccceeeEEeCHH-HH-hhccC--CCC-----cC--
Q 012363 278 DAGALLVFDEVQCGLGRTGYLWAHEHYGI-FPDIMTLA--KPLAGGLPIGAALVTEK-VA-SAINY--GDH-----GS-- 343 (465)
Q Consensus 278 ~~g~llI~DEv~~g~gr~g~~~~~~~~~~-~pdi~t~s--K~lg~G~~iG~v~~~~~-i~-~~~~~--~~~-----~~-- 343 (465)
+||+++++|++|.+....+..+.....++ ..|.++++ |++++...+|+++.++. .+ +.+.. ... ..
T Consensus 262 ~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~ 341 (475)
T 3k40_A 262 KHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAP 341 (475)
T ss_dssp HTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC--------------------
T ss_pred HhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCccccCCCcCCCCC
Confidence 99999999999875322221111111232 35887764 99987778888887653 32 22210 000 00
Q ss_pred -----CC-CChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCceee-eccceEEEEEecC---Ch
Q 012363 344 -----TF-AGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKDV-RGLGLIIGIEFDV---SA 410 (465)
Q Consensus 344 -----t~-~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~i~~~~---~~ 410 (465)
+. .+-++...+..++|+.+.. +++.++..++.+++++.|++ .|.+..+ +....++.+.+.. ..
T Consensus 342 ~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~~g~~l~~~~~~~iv~f~~~~~~~~~ 417 (475)
T 3k40_A 342 DYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVA----DSRFELAAEINMGLVCFRLKGSNERN 417 (475)
T ss_dssp -------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----STTEEESSCCBTTEEEEEESSCHHHH
T ss_pred CcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc----CCCEEEecCCceEEEEEEeCCchHHH
Confidence 00 1111222333344443322 34455555666666666554 3433222 2334556666632 24
Q ss_pred HHHHHHHHHCCceE-eecC--CCCEEEEecC-CCCcHHHHHHHHHHHHHHHHHhhh
Q 012363 411 TPVVDACRDSGLLV-LTAG--KGNVVRLVPP-LIISEQELDQAVEILCKTLPVLDS 462 (465)
Q Consensus 411 ~~~~~~l~~~Gv~v-~~~~--~~~~lRi~~~-~~~t~e~i~~~l~~l~~~l~~~~~ 462 (465)
.++.+.|.++|.++ .+.. ...++|+++. ..+|++||++++++|+++++++.+
T Consensus 418 ~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~~~ 473 (475)
T 3k40_A 418 EALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEMEQ 473 (475)
T ss_dssp HHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 67888899888754 3321 1257999865 446899999999999999987754
No 224
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.74 E-value=1.2e-16 Score=161.60 Aligned_cols=281 Identities=16% Similarity=0.096 Sum_probs=160.6
Q ss_pred HHHHHHHHHHhhcCCC--eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccc----ccCCC
Q 012363 141 PQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA----LTSKE 214 (465)
Q Consensus 141 ~~~~la~~l~~~~~~~--~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~----~~~~~ 214 (465)
...+++++++++++.+ ++.+++|++.+++.++.+++ .. ++++||+.+++|+.+...... .+...
T Consensus 109 ~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~-~~---------~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v 178 (438)
T 1wyu_A 109 ATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALR-ET---------GRMGVLVSQGVHPEYRAVLRAYLEAVGAKL 178 (438)
T ss_dssp HHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHH-HH---------TCCEEEEETTSCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHh-cC---------CCCEEEEcCccCHhHHHHHHHHHHHCCCEE
Confidence 3678899999998843 56899999944444433322 11 588999999888665432211 11111
Q ss_pred CcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecc-ccCCC
Q 012363 215 HYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEV-QCGLG 293 (465)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv-~~g~g 293 (465)
.. .+. .+.. -|+++ +++ ++++|++... +..|.+.+ +++|.++|++||+++|+|-. ++ +|
T Consensus 179 ~~----v~~-~~~~----~d~~~----i~~-~t~~v~i~~p-n~tG~~~~----l~~i~~la~~~g~~vivd~d~~a-~g 238 (438)
T 1wyu_A 179 LT----LPL-EGGR----TPLPE----VGE-EVGAVVVQNP-NFLGALED----LGPFAEAAHGAGALFVAVADPLS-LG 238 (438)
T ss_dssp EE----ECC-BTTB----CCCCC----CCT-TEEEEEEESS-CTTSBCCC----HHHHHHHHHHTTCEEEEECCTTG-GG
T ss_pred EE----EcC-cCCc----cCHHH----hCC-CeEEEEEECC-CCCeEEec----HHHHHHHHHHcCCEEEEEechhh-cc
Confidence 11 011 0000 13333 544 4666665554 55566654 99999999999999995522 21 22
Q ss_pred CCCccccccccCCcccEEEec-ccCC-----CccceeeEEeCHHHHhhccCCC--------------------------C
Q 012363 294 RTGYLWAHEHYGIFPDIMTLA-KPLA-----GGLPIGAALVTEKVASAINYGD--------------------------H 341 (465)
Q Consensus 294 r~g~~~~~~~~~~~pdi~t~s-K~lg-----~G~~iG~v~~~~~i~~~~~~~~--------------------------~ 341 (465)
..... ..+ .+|++++| |.++ +|.++|++++++++++.+.... .
T Consensus 239 ~~~~~---~~~--g~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~ 313 (438)
T 1wyu_A 239 VLKPP---GAY--GADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRA 313 (438)
T ss_dssp TBCCH---HHH--TCSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGG
T ss_pred CcCCC---ccC--CCCEEEECCcccCCCccCCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchh
Confidence 11111 122 36888774 7654 2568999999998877663211 0
Q ss_pred cCCCCC---hHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccceEE--EEEecCChHHHHHH
Q 012363 342 GSTFAG---SPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLII--GIEFDVSATPVVDA 416 (465)
Q Consensus 342 ~~t~~~---~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~--~i~~~~~~~~~~~~ 416 (465)
..|.+. +.+...++...+..+..+. ++++.+....+++.+.+.+.+.+.+........+. .+.++.+..++.+.
T Consensus 314 ~~t~~~~~~~~~~a~~aa~~l~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (438)
T 1wyu_A 314 KAKSNITTNAQLTALMGAMYLAALGPEG-LREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALPKDPEAVRRA 392 (438)
T ss_dssp GSSCCCCSCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECSSCHHHHHHH
T ss_pred cccCCccchHHHHHHHHHHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHhcCCCeEECCCCCeEEEEEEeCCCCHHHHHHH
Confidence 123332 2232222222244332222 33333333444444444444443332222212332 23334467889999
Q ss_pred HHHCCceE--eecC--CCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 012363 417 CRDSGLLV--LTAG--KGNVVRLVPPLIISEQELDQAVEILCKTL 457 (465)
Q Consensus 417 l~~~Gv~v--~~~~--~~~~lRi~~~~~~t~e~i~~~l~~l~~~l 457 (465)
|.++||.+ .++. .++.+|+++...+|++|+++++++|++++
T Consensus 393 L~~~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 393 LAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp HHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred HHHCCceeccccccccCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 99999998 4432 14789999998899999999999998764
No 225
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.74 E-value=1.5e-16 Score=158.72 Aligned_cols=277 Identities=14% Similarity=0.097 Sum_probs=170.2
Q ss_pred CCHHHHHHHHHHHhh---cc-cccCCCCCHHHHHHHHHHHhhcCCCeEEe---cCCHHHHHHHHHHHHHHHhhhcCCCCC
Q 012363 115 GDADWIKAVVDQANV---LT-HVSNMYYSIPQIELAKRLVACSFADRVFF---SNTGTEANEAAIKFARKFQRHSNPDSK 187 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~---~~-~~~~~~~~~~~~~la~~l~~~~~~~~v~~---~~sG~eA~~~al~~a~~~t~~~~~~~~ 187 (465)
|+++|.+|+.+.... .. .....|+.....+|+++++++++.+..++ ++||++|+..++..+.
T Consensus 30 n~~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all----------- 98 (409)
T 3jzl_A 30 NQAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGIL----------- 98 (409)
T ss_dssp HHHHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHHC-----------
T ss_pred hHHHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHhc-----------
Confidence 557788888775421 11 11223556668899999999999777666 8999999999988654
Q ss_pred CCCceEEEEc-CCcccCccccccccCCCCcCCCCCCCCCCceEeeC-----CCHHHHHhhcCCCCeEEEEEcc----cCC
Q 012363 188 EPATEFVSFT-NSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAVFVEP----IQG 257 (465)
Q Consensus 188 ~~~~~ii~~~-~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~a~vi~ep----~~~ 257 (465)
.++|.||+.+ +.|.+..... ...+.. ...+......+.+++. .|++++++++++ ++++|++++ .++
T Consensus 99 ~~GD~Vl~~~~~~y~~~~~~~-~~~g~~--~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~-~tklV~i~~s~g~p~n 174 (409)
T 3jzl_A 99 RPDDELLYITGQPYDTLEEIV-GIRKQG--QGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTP-KTKMIGIQRSRGYADR 174 (409)
T ss_dssp CTTCEEEECSSSCCTTHHHHH-TSSSSS--SSCTGGGTCEEEECCCCTTSCCCHHHHHHHCCT-TEEEEEEECSCTTSSS
T ss_pred CCCCEEEEeCCCCcHhHHHHH-hcccch--hhHHHHcCCEEEEeCCCCCCCcCHHHHHHhccC-CCeEEEEECCCCCCCC
Confidence 2688999998 8876654211 000000 0000011112233333 489999999975 578888887 656
Q ss_pred CCCcccCCHHHHHHHHHHHHH--hCCEEEEeccccCCCCCCccccccccCCcccEE--EecccCCCc--cceeeEEeCHH
Q 012363 258 EGGIYSATKEFLQFLRDACDD--AGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGG--LPIGAALVTEK 331 (465)
Q Consensus 258 ~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~G--~~iG~v~~~~~ 331 (465)
..|.+. .+++|.++|++ ||+++|+||+|..+....... ..+ .|++ +++|.++++ ...|+++++++
T Consensus 175 ptg~v~----~l~~I~~la~~~~~~~~livD~a~~~~~~~~~p~---~~g--~Div~~S~sK~lgg~~~~~GG~v~~~~~ 245 (409)
T 3jzl_A 175 PSFTIE----KIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPP---EVG--ADIIAGSLIKNPGGGLAKTGGYIAGKEA 245 (409)
T ss_dssp CCCCHH----HHHHHHHHHHHHCTTCEEEEECTTCTTTSSCCSG---GGT--CSEEEEETTSGGGTTTCSSCEEEEECHH
T ss_pred CcCccc----cHHHHHHHHHhhCCCCEEEEeCCcccccccCCcc---ccC--CeEEEECccccCCccCCceEEEEEeCHH
Confidence 666554 39999999999 999999999987542111111 123 4655 688999874 44699999999
Q ss_pred HHhhccCC--C--CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCcee----eeccceEEE
Q 012363 332 VASAINYG--D--HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKD----VRGLGLIIG 403 (465)
Q Consensus 332 i~~~~~~~--~--~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~----~~~~g~~~~ 403 (465)
+++.+... . .+...+..+..+.+++..++.+ +...++..++..++.+.|++. +.... .++...++.
T Consensus 246 li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~----g~~v~p~~~~~~~~~i~~ 319 (409)
T 3jzl_A 246 LVDLCGYRLTTPGIGREAGASLYSLLEMYQGFFLA--PHVTAQAIKGARFTAAMLAEF----GVEADPVWDAPRTDLIQS 319 (409)
T ss_dssp HHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT----TCEEESCTTSCCSSSCCE
T ss_pred HHHHHHHHhccccccccccccHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCCccEEEE
Confidence 98887531 1 1122222221133444444432 445666777777777777654 32111 112233777
Q ss_pred EEec--CChHHHHHHHHHCC
Q 012363 404 IEFD--VSATPVVDACRDSG 421 (465)
Q Consensus 404 i~~~--~~~~~~~~~l~~~G 421 (465)
+.++ ....++++.|.+..
T Consensus 320 i~l~~~~~~~~~~~~L~~~~ 339 (409)
T 3jzl_A 320 VSFHNKEKMVAFAQAIQAAS 339 (409)
T ss_dssp EECSCHHHHHHHHHHHHHTS
T ss_pred EEeCCHHHHHHHHHHHHhcC
Confidence 7774 23456788888763
No 226
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.73 E-value=2.4e-16 Score=167.23 Aligned_cols=300 Identities=14% Similarity=0.035 Sum_probs=179.9
Q ss_pred CHHHHHHHHHHHhhcCCCe-EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCC-CCc
Q 012363 139 SIPQIELAKRLVACSFADR-VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK-EHY 216 (465)
Q Consensus 139 ~~~~~~la~~l~~~~~~~~-v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~-~~~ 216 (465)
.....++++.+++.++.+. +++++|+++|+..++..+. .++++||+..++|+......+..++. ..+
T Consensus 172 ~~~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al~-----------~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~ 240 (730)
T 1c4k_A 172 EGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALV-----------SNGDLVLFDRNNHKSVYNSALAMAGGRPVY 240 (730)
T ss_dssp BTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHC-----------CTTCEEEEETTCCHHHHHHHTTTTCCEEEE
T ss_pred hHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhc-----------CCCCEEEEcCCchHHHHHHHHHHCCCEEEE
Confidence 3457889999999999655 5566666699999988664 26889999999876665441332222 111
Q ss_pred CCCCCCCCCCc-eEeeCCCHHHH-----HhhcCCC------C----eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC
Q 012363 217 RSPFEPVMPGV-NFVEYGNIEAT-----RKLIQPG------K----TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG 280 (465)
Q Consensus 217 ~~~~~~~~~~~-~~~~~~d~~~l-----e~~l~~~------~----~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g 280 (465)
... ....-+. .. -|+++| +++++++ . ..+++++|+ ..|.+.+ +++|.++|++||
T Consensus 241 v~~-~~~~~~i~g~---id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn--~~G~v~d----l~~I~~la~~~g 310 (730)
T 1c4k_A 241 LQT-NRNPYGFIGG---IYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGT--YDGTIYN----AHEVVKRIGHLC 310 (730)
T ss_dssp ECE-EECTTCCEEE---ECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBC--TTSEEEC----HHHHHHHHGGGB
T ss_pred EeC-CccccCccCC---CCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCC--CCCeecC----HHHHHHHHHHcC
Confidence 100 0000000 01 166666 8888753 2 345566663 3566665 999999999999
Q ss_pred CEEEEeccccC-CCCCC--c---cccccccCCc-cc-EE--EecccCCCccce-eeEEeCHHHH---------hhccCC-
Q 012363 281 ALLVFDEVQCG-LGRTG--Y---LWAHEHYGIF-PD-IM--TLAKPLAGGLPI-GAALVTEKVA---------SAINYG- 339 (465)
Q Consensus 281 ~llI~DEv~~g-~gr~g--~---~~~~~~~~~~-pd-i~--t~sK~lg~G~~i-G~v~~~~~i~---------~~~~~~- 339 (465)
++||+||+|.+ ++..+ . ....+.++.. ++ ++ +++|+++| ++. |+++.+++.+ ..+...
T Consensus 311 ~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g-~~~gg~I~v~~~~l~g~~~~i~~~~~~~~~ 389 (730)
T 1c4k_A 311 DYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAG-FSQTSQIHKKDSHIKGQLRYCDHKHFNNSF 389 (730)
T ss_dssp SEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSC-CTTCEEEEEECGGGTTSTTCCCHHHHHHHH
T ss_pred CeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCC-CCCEEEEEecchhhcCcccccCHHHHHHHH
Confidence 99999999863 21111 1 1111122332 11 44 46798764 343 4554443322 011100
Q ss_pred CCcCCCCChHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCCcee-e--------------------
Q 012363 340 DHGSTFAGSPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPHVKD-V-------------------- 395 (465)
Q Consensus 340 ~~~~t~~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~-------------------- 395 (465)
....+.+.+++.+++..++++.+.. .++++++.++.+++++.|++.+..+..... .
T Consensus 390 ~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~ 469 (730)
T 1c4k_A 390 NLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDY 469 (730)
T ss_dssp HHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGG
T ss_pred HHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchh
Confidence 0112334566666666677776543 456777888888888888661111110000 0
Q ss_pred ------------ec--cce-E-----EEEEec-------------CChHHHHHHHHHCCceEeecCCCCEEEEecCCCCc
Q 012363 396 ------------RG--LGL-I-----IGIEFD-------------VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIIS 442 (465)
Q Consensus 396 ------------~~--~g~-~-----~~i~~~-------------~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t 442 (465)
.+ .+. + +.+..+ .++..+.+.|.++||.+...+. ..+|++++..+|
T Consensus 470 ~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~~~-~~ir~~~s~g~t 548 (730)
T 1c4k_A 470 WRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDL-NSILFLMTPAET 548 (730)
T ss_dssp GBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEECS-SEEEEECCTTCC
T ss_pred hccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEECCC-CeEEEEeCCCCC
Confidence 00 111 1 233331 3567899999999999987665 789999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 012363 443 EQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 443 ~e~i~~~l~~l~~~l~~~~ 461 (465)
+++++.++++|.++.+.+.
T Consensus 549 ~e~i~~Ll~aL~~i~~~~~ 567 (730)
T 1c4k_A 549 PAKMNNLITQLLQLQRLIE 567 (730)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 9999999999999887664
No 227
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.71 E-value=1.5e-16 Score=159.18 Aligned_cols=277 Identities=13% Similarity=0.082 Sum_probs=167.5
Q ss_pred CCHHHHHHHHHHHh--h-ccc-ccCCCCCHHHHHHHHHHHhhcCCCeEEe---cCCHHHHHHHHHHHHHHHhhhcCCCCC
Q 012363 115 GDADWIKAVVDQAN--V-LTH-VSNMYYSIPQIELAKRLVACSFADRVFF---SNTGTEANEAAIKFARKFQRHSNPDSK 187 (465)
Q Consensus 115 ~~p~v~~a~~~~~~--~-~~~-~~~~~~~~~~~~la~~l~~~~~~~~v~~---~~sG~eA~~~al~~a~~~t~~~~~~~~ 187 (465)
+.++|++|+.+... . ... ....|+.....+|+++++++++.+..++ ++||++|+..++..+.
T Consensus 44 n~~~Vl~A~~~~~~~~~~~~~~~gy~y~~~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all----------- 112 (427)
T 3i16_A 44 NQLKVLNAFQEERISEAHFTNSSGYGYGDIGRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNL----------- 112 (427)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHHC-----------
T ss_pred CHHHHHHHHHHhchhHHhcCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHHh-----------
Confidence 34678888776421 1 111 1123455668899999999999776666 8999999999888654
Q ss_pred CCCceEEEEc-CCcccCccccccccCCCCcCCCCCCCCCCceEeeC-----CCHHHHHhhcCC-CCeEEEEEcc----cC
Q 012363 188 EPATEFVSFT-NSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQP-GKTAAVFVEP----IQ 256 (465)
Q Consensus 188 ~~~~~ii~~~-~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~-~~~a~vi~ep----~~ 256 (465)
.++|+|++.+ +.|++..... ...+... ...+......+..++. .|+++++++++. .++++|++++ .+
T Consensus 113 ~pGD~Vl~~~~~~y~~~~~~~-g~~~~~~-~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~ 190 (427)
T 3i16_A 113 RPGNTMLSVCGEPYDTLHDVI-GITENSN-MGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGW 190 (427)
T ss_dssp CTTCEEEESSSSCCGGGHHHH-TCSCCCS-SCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSS
T ss_pred CCCCEEEEeCCCccHHHHHHH-hccccch-HHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCC
Confidence 2689999998 8887654211 0000000 0000011112223333 489999999973 4688888888 55
Q ss_pred CCCCcccCCHHHHHHHHHHHHH--hCCEEEEeccccCCCCCCccccccccCCcccEE--EecccCCC-c-cceeeEEeCH
Q 012363 257 GEGGIYSATKEFLQFLRDACDD--AGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVTE 330 (465)
Q Consensus 257 ~~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~~ 330 (465)
+..|.+ ..+++|+++|++ ||+++|+||+|..+....... ..+ .|++ +++|.+++ | .+.|++++++
T Consensus 191 nptg~i----~dl~~i~~la~~~~~g~~livD~a~~~~~~~~~p~---~~g--aDiv~~S~sK~lgg~g~~~gG~i~~~~ 261 (427)
T 3i16_A 191 RRALLI----EDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPT---DVG--ADLIAGSLIKNIGGGIAPTGGYLAGTK 261 (427)
T ss_dssp SCCCCH----HHHHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGG---GGT--CSEEEEETTSGGGTTTCCSCEEEEECH
T ss_pred CCcccH----HHHHHHHHHHHHhCCCCEEEEECCCccccccCCcc---ccC--CeEEEecCcccCCCCCCceEEEEEECH
Confidence 555554 349999999999 999999999997552122211 123 3555 68899987 4 5679999999
Q ss_pred HHHhhccCCCCcCCCC--ChH-HH-HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccce-----E
Q 012363 331 KVASAINYGDHGSTFA--GSP-LV-CNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGL-----I 401 (465)
Q Consensus 331 ~i~~~~~~~~~~~t~~--~~~-~~-~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~-----~ 401 (465)
++++.+........++ ..| +. +..++..++.+ +...++..++..++.+.|++. +... .++... +
T Consensus 262 ~li~~l~~~~~~~~~g~~~~~~~~~a~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~----g~~V-~p~~~~~~~~~i 334 (427)
T 3i16_A 262 DCIEKTSYRLTVPGIGGECGSTFGVVRSMYQGLFLA--PHISMEALKGAILCSRIMELA----GFEV-MPKYDEKRSDII 334 (427)
T ss_dssp HHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT----TCEE-ESCTTSCCSSSC
T ss_pred HHHHHHHHhcccCccCccCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhC----CCee-cCCCCCCCccEE
Confidence 9998876411111111 111 22 23333333322 455667777777777766553 3311 222333 7
Q ss_pred EEEEec--CChHHHHHHHHHC
Q 012363 402 IGIEFD--VSATPVVDACRDS 420 (465)
Q Consensus 402 ~~i~~~--~~~~~~~~~l~~~ 420 (465)
+.+.+. ....+|++.|...
T Consensus 335 ~~i~l~~~~~~~~f~~~l~~~ 355 (427)
T 3i16_A 335 QSIKFNDKDKLIEFCKGIQTG 355 (427)
T ss_dssp EEEECSSHHHHHHHHHHHHHT
T ss_pred EEEEECCHHHHHHHHHHHhhc
Confidence 788874 2345678888775
No 228
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.71 E-value=3.6e-16 Score=156.48 Aligned_cols=277 Identities=12% Similarity=0.091 Sum_probs=168.5
Q ss_pred CCHHHHHHHHHHHhh---cc-cccCCCCCHHHHHHHHHHHhhcCCCeEEe---cCCHHHHHHHHHHHHHHHhhhcCCCCC
Q 012363 115 GDADWIKAVVDQANV---LT-HVSNMYYSIPQIELAKRLVACSFADRVFF---SNTGTEANEAAIKFARKFQRHSNPDSK 187 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~---~~-~~~~~~~~~~~~~la~~l~~~~~~~~v~~---~~sG~eA~~~al~~a~~~t~~~~~~~~ 187 (465)
|+++|.+|+.+.... .. .....|+.....+|+++++++++.+..++ ++||++|+..++..+.
T Consensus 45 n~~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~g~e~alv~p~~~sGt~A~~~al~all----------- 113 (427)
T 3hvy_A 45 NQLKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNL----------- 113 (427)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHTC-----------
T ss_pred hHHHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHhCCCceEEeCCCCcHHHHHHHHHHHhc-----------
Confidence 557888888775321 11 11123455568899999999999777777 8999999999888654
Q ss_pred CCCceEEEEc-CCcccCccccccccCCCCcCCCCCCCCCCceEeeC----CCHHHHHhhcCC-CCeEEEEEcc----cCC
Q 012363 188 EPATEFVSFT-NSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY----GNIEATRKLIQP-GKTAAVFVEP----IQG 257 (465)
Q Consensus 188 ~~~~~ii~~~-~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~~-~~~a~vi~ep----~~~ 257 (465)
.++|+|++.+ +.|++..... ...+... ...+......+..++. .|+++++++++. .++++|++++ .++
T Consensus 114 ~pGD~Vl~~~~~~y~~~~~~~-g~~~~~~-~~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~n 191 (427)
T 3hvy_A 114 RPNDTMMSICGMPYDTLHDII-GMDDSKK-VGSLREYGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWR 191 (427)
T ss_dssp CTTCEEEECSSSCCGGGHHHH-TCCTTCC-SCCTGGGTCEEEECCCBTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSS
T ss_pred CCCCEEEEeCCCCchhHHHHh-ccccchh-hhHHHHcCCEEEEecCCCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCC
Confidence 2789999998 8887664111 0000000 0000011122233333 489999999972 4688888888 444
Q ss_pred CCCcccCCHHHHHHHHHHHHH--hCCEEEEeccccCCCCCCccccccccCCcccEE--EecccCCC-c-cceeeEEeCHH
Q 012363 258 EGGIYSATKEFLQFLRDACDD--AGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVTEK 331 (465)
Q Consensus 258 ~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~~~ 331 (465)
..|.+ ..+++|+++|++ ||+++|+||+|..+....... ..+ .|++ |++|.+++ | .+.|+++++++
T Consensus 192 ptg~v----~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~~p~---~~g--aDiv~~S~sK~lgg~g~~~GG~i~~~~~ 262 (427)
T 3hvy_A 192 KSLRI----AEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEPT---DVG--ADIIAGSLIKNIGGGIATTGGYIAGKEE 262 (427)
T ss_dssp CCCCH----HHHHHHHHHHHHHCSSSEEEEECTTCTTTSSSCGG---GGT--CSEEEEETTSGGGTTTCCSCEEEEECHH
T ss_pred ccccH----HHHHHHHHHHHHhCCCCEEEEECCccccccCCCCc---ccC--CeEEEECCcccccccccceEEEEEECHH
Confidence 44544 349999999999 899999999987542122211 123 3555 68899987 4 56699999999
Q ss_pred HHhhccCC--C--CcCCCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccc-----eEE
Q 012363 332 VASAINYG--D--HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLG-----LII 402 (465)
Q Consensus 332 i~~~~~~~--~--~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g-----~~~ 402 (465)
+++.+... . .+.+.+.++..+..++..++.+ +...++..++..++.+.|++. +... .++.. .++
T Consensus 263 li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~~~--~~r~~~~~~~a~~la~~L~~~----g~~V-~p~~~~~~~~li~ 335 (427)
T 3hvy_A 263 YVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMA--PHVTIEAVKGAVFCARIMELA----GFDV-LPKYNDKRTDIIQ 335 (427)
T ss_dssp HHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT----TCEE-ESCTTSCCSSSEE
T ss_pred HHHHHHHHhhcCCcccccCCCHHHHHHHHHhHhHH--HHHHHHHHHHHHHHHHHHHhC----CCee-cCCCCCCCceEEE
Confidence 98887541 1 1111111111133333444322 455667777777777766553 3211 22222 377
Q ss_pred EEEec--CChHHHHHHHHHC
Q 012363 403 GIEFD--VSATPVVDACRDS 420 (465)
Q Consensus 403 ~i~~~--~~~~~~~~~l~~~ 420 (465)
.+.++ ....+|++.|...
T Consensus 336 ~~~l~~~~~~~~f~~~l~~~ 355 (427)
T 3hvy_A 336 AIKFNDEKKLIDFIKGIQTA 355 (427)
T ss_dssp EEECSSHHHHHHHHHHHHHT
T ss_pred EEeCCCHHHHHHHHHHhccc
Confidence 78774 2245677777764
No 229
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.67 E-value=3e-15 Score=160.26 Aligned_cols=300 Identities=15% Similarity=0.057 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHhhcCCC-eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCC
Q 012363 140 IPQIELAKRLVACSFAD-RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRS 218 (465)
Q Consensus 140 ~~~~~la~~l~~~~~~~-~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 218 (465)
....++.+.+++.++.+ .++++||+++|+..++..+. .++++|++..++|+.........+....+.
T Consensus 205 g~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al~-----------~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v- 272 (755)
T 2vyc_A 205 GAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACM-----------TDNDVVVVDRNCHKSIEQGLMLTGAKPVYM- 272 (755)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHC-----------CTTCEEEEESSCCHHHHHHHHHHCCEEEEE-
T ss_pred cHHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHhc-----------CCCCEEEECCCchHHHHHHHHHcCCEEEEE-
Confidence 34677888888888855 46667777899999988765 268999999999876554433322222211
Q ss_pred CCCCCCCC-ceE-eeC----CCHHHHHhhcCC--CCe--------EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCE
Q 012363 219 PFEPVMPG-VNF-VEY----GNIEATRKLIQP--GKT--------AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGAL 282 (465)
Q Consensus 219 ~~~~~~~~-~~~-~~~----~d~~~le~~l~~--~~~--------a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~l 282 (465)
+...+ ... -+. -|+++|+++++. ... .+++++| + ..|.+.+ +++|.++|++||++
T Consensus 273 ---~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n-~~G~v~d----l~~I~~ia~~~~~~ 343 (755)
T 2vyc_A 273 ---VPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-T-YDGVCYN----AKEAQDLLEKTSDR 343 (755)
T ss_dssp ---CCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-C-TTSEEEC----HHHHHHHHTTTCSE
T ss_pred ---eCCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-C-CCceecC----HHHHHHHHHHcCCE
Confidence 11100 000 000 178999999852 121 4666666 3 3566655 99999999999999
Q ss_pred EEEeccccCCCCCCccc--cccccC--Cc---c---cEEEecccCCCccceeeEEeCHH--HH--hhccCC-CCcCCCCC
Q 012363 283 LVFDEVQCGLGRTGYLW--AHEHYG--IF---P---DIMTLAKPLAGGLPIGAALVTEK--VA--SAINYG-DHGSTFAG 347 (465)
Q Consensus 283 lI~DEv~~g~gr~g~~~--~~~~~~--~~---p---di~t~sK~lg~G~~iG~v~~~~~--i~--~~~~~~-~~~~t~~~ 347 (465)
||+||+|.+.-..+..+ .....+ .. + -+.+++|+++|--..|+++++++ .+ ..+... ....+.+.
T Consensus 344 livDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~~~~~~~s~sp 423 (755)
T 2vyc_A 344 LHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMMHATTSP 423 (755)
T ss_dssp EEEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHHHHHHTSCSSC
T ss_pred EEEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHHHHHHHHhCCCCH
Confidence 99999997421112110 000012 11 1 12357798764223566666443 11 111110 11223345
Q ss_pred hHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHc--------CCCc--eeeec-----------------
Q 012363 348 SPLVCNAAIAVLDKISN---PAFLASVSKKGHYFKETLKQKLAR--------NPHV--KDVRG----------------- 397 (465)
Q Consensus 348 ~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~--------~~~~--~~~~~----------------- 397 (465)
+.+.+++..++++.+.. ++++++..++.+++++.|+++... +... ..+.+
T Consensus 424 ~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (755)
T 2vyc_A 424 LYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLL 503 (755)
T ss_dssp CHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchhc
Confidence 67777777778887654 357888899999999999886330 1000 00000
Q ss_pred ----------------------cc------eEEEEEec------------CChHHHHHHHHHCCceEeecCCCCEEEEec
Q 012363 398 ----------------------LG------LIIGIEFD------------VSATPVVDACRDSGLLVLTAGKGNVVRLVP 437 (465)
Q Consensus 398 ----------------------~g------~~~~i~~~------------~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~ 437 (465)
.| ..+.+..+ .++..+.+.|.++||.+...+. +.+|+.+
T Consensus 504 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e~~~~-~~v~~~~ 582 (755)
T 2vyc_A 504 TTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTTD-FQIMFLF 582 (755)
T ss_dssp HHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCSEECS-SEEEEEC
T ss_pred cchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCEEeecCC-CeEEEEE
Confidence 11 23334332 1336788899899999876554 7899999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhh
Q 012363 438 PLIISEQELDQAVEILCKTLPVLD 461 (465)
Q Consensus 438 ~~~~t~e~i~~~l~~l~~~l~~~~ 461 (465)
+...|+++++.++++|.++.+...
T Consensus 583 ~~g~t~~~~~~l~~al~~~~~~~~ 606 (755)
T 2vyc_A 583 SMGVTRGKWGTLVNTLCSFKRHYD 606 (755)
T ss_dssp CTTCCTTTTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999998876553
No 230
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.67 E-value=1.9e-15 Score=148.48 Aligned_cols=314 Identities=11% Similarity=0.021 Sum_probs=185.6
Q ss_pred CCCCCHHHHHHHHHHHhhccc-ccCC---CC-----CHHHHHHHHHHHhhcC-C--CeEEe-cCCHHHHHHHHHHHHHHH
Q 012363 112 LGHGDADWIKAVVDQANVLTH-VSNM---YY-----SIPQIELAKRLVACSF-A--DRVFF-SNTGTEANEAAIKFARKF 178 (465)
Q Consensus 112 lGh~~p~v~~a~~~~~~~~~~-~~~~---~~-----~~~~~~la~~l~~~~~-~--~~v~~-~~sG~eA~~~al~~a~~~ 178 (465)
.+.-+|+|.+|+.+.+..... ..+. .. .....+.++.|++.++ . ++|+| +.|||+++++++..+...
T Consensus 21 ~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~ 100 (377)
T 3e77_A 21 QSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGL 100 (377)
T ss_dssp SCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGG
T ss_pred cCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCC
Confidence 345789999999998764221 1111 11 1225677778888887 2 46888 589999999999865421
Q ss_pred hhhcCCCCCCCCceEEEEcCCcccCcccccc-ccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEcccCC
Q 012363 179 QRHSNPDSKEPATEFVSFTNSFHGRTMGALA-LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQG 257 (465)
Q Consensus 179 t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~ep~~~ 257 (465)
.++|++++..-+.++....-.. ..+.... ..+...+.. .++++++..+++ ++++|.+..+..
T Consensus 101 ---------~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~---~~~~~~~~~----~~~~~~~~~i~~-~t~lV~~~h~et 163 (377)
T 3e77_A 101 ---------KAGRCADYVVTGAWSAKAAEEAKKFGTINI---VHPKLGSYT----KIPDPSTWNLNP-DASYVYYCANET 163 (377)
T ss_dssp ---------STTCEEEECCCSHHHHHHHHHHTTTSEEEE---CSCCCSSSC----SCCCGGGCCCCT-TCSCEEEESEET
T ss_pred ---------CCCCeEEEEECCHHHHHHHHHHHHhCCceE---EeccCCCcC----CCCChHHhccCC-CccEEEEeCccC
Confidence 0267887776666654211110 0011100 011111111 134556666654 456666666656
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCccceeeEEeCHHHHhh
Q 012363 258 EGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASA 335 (465)
Q Consensus 258 ~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~ 335 (465)
..|++.| + +|+++|+++++|-+++ +|. .....+.++ ++++| |.+| .-.+|++++++++++.
T Consensus 164 ~tG~~~p----i-----i~~~~~~~~~vD~~q~-~g~--~~id~~~~~----~~~~s~~K~~g-p~G~g~l~~~~~~l~~ 226 (377)
T 3e77_A 164 VHGVEFD----F-----IPDVKGAVLVCDMSSN-FLS--KPVDVSKFG----VIFAGAQKNVG-SAGVTVVIVRDDLLGF 226 (377)
T ss_dssp TTTEECS----S-----CCCCTTCCEEEECTTT-TTS--SCCCGGGCS----EEEEEGGGTTS-CTTCEEEEEETTSCSC
T ss_pred chheEch----h-----hhccCCCEEEEEcccc-cCC--CCCchhhcC----EEEEecccccC-CCccEEEEEcHHHHhh
Confidence 6687776 3 4789999999999997 432 223334444 34454 9994 4567888888887655
Q ss_pred ccCC-----------CCcCCC-CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCce-e---e-ecc
Q 012363 336 INYG-----------DHGSTF-AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVK-D---V-RGL 398 (465)
Q Consensus 336 ~~~~-----------~~~~t~-~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~---~-~~~ 398 (465)
+.+. ....++ ..|..+..+..++|+.+.+..=++.+.+....+.+.|.+.+.+.+.+. . . ...
T Consensus 227 ~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs 306 (377)
T 3e77_A 227 ALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRS 306 (377)
T ss_dssp CCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBC
T ss_pred ccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcC
Confidence 4321 012223 345566667778888765431233444444444444444444443221 1 1 122
Q ss_pred ceEEEEEecC-C--h---HHHHHHHHHCCceEeecCC-CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012363 399 GLIIGIEFDV-S--A---TPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 399 g~~~~i~~~~-~--~---~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
+..+.+.++. . . ..+...|.++||.+.++.. .+.+|+++...+|++|++.+++.|++++++
T Consensus 307 ~~ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 307 KMNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp SSEEEEEESSTTCCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 4456677642 1 1 3577788899999876532 245999999999999999999999998765
No 231
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.65 E-value=1.5e-15 Score=150.00 Aligned_cols=317 Identities=9% Similarity=-0.010 Sum_probs=181.3
Q ss_pred CEEEecccCcccccCCCCCHHHHHHHHHHHhhccc-ccC------CC--CCHHHHHHHHHHHhhcC-C--CeEEe-cCCH
Q 012363 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH-VSN------MY--YSIPQIELAKRLVACSF-A--DRVFF-SNTG 164 (465)
Q Consensus 98 ~~ylD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~-~~~------~~--~~~~~~~la~~l~~~~~-~--~~v~~-~~sG 164 (465)
+.|+|..+... -+|+|++|+.+.+..... ..+ .. .....++.++.+++.++ . ++|+| +.||
T Consensus 27 ~~yl~~agpt~------~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~ 100 (386)
T 3qm2_A 27 QVFNFSSGPAM------LPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGG 100 (386)
T ss_dssp CCEECCSSSCC------CCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCT
T ss_pred cCccccCCCCC------CCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCc
Confidence 46787655332 679999999876643211 000 01 12225677788888887 3 46888 6999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCcccccc-ccCCCCcCCCCCCCC---CCceEeeCCCHHHHHh
Q 012363 165 TEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA-LTSKEHYRSPFEPVM---PGVNFVEYGNIEATRK 240 (465)
Q Consensus 165 ~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~d~~~le~ 240 (465)
|+++++++..+.. +++++++..-+.++....... ..+. . .+.+.. .+... +++++++
T Consensus 101 T~a~n~ai~~l~~-----------~gd~v~~~~~~~~~~~~~~~a~~~G~-v---~~v~~~~~~~G~~~----~~~~~~~ 161 (386)
T 3qm2_A 101 RGQFAGVPLNLLG-----------DKTTADYVDAGYWAASAIKEAKKYCA-P---QIIDAKITVDGKRA----VKPMREW 161 (386)
T ss_dssp THHHHHHHHHHCT-----------TCCEEEEEESSHHHHHHHHHHTTTSE-E---EEEECEEEETTEEE----ECCGGGC
T ss_pred hHHHHHHHHhccC-----------CCCeEEEEeCCHHHHHHHHHHHHhCC-e---EEEecCcccCCCCC----CchHHHh
Confidence 9999999886531 467777666655554211111 0010 0 001111 11101 3466777
Q ss_pred hcCCCCeEEEEEcccCCCCCcc-cCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEecccCCC
Q 012363 241 LIQPGKTAAVFVEPIQGEGGIY-SATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAG 319 (465)
Q Consensus 241 ~l~~~~~a~vi~ep~~~~~G~~-~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~lg~ 319 (465)
++++ ++++|.+..+....|++ .| +++|. +|+++++|-+|+ +|.. ....+.++ .++.+--|.+|
T Consensus 162 ~l~~-~t~lV~~~h~et~tG~~i~p----i~~i~-----~g~~~~vDa~qs-~g~~--pidv~~~~--~~~~s~hK~lG- 225 (386)
T 3qm2_A 162 QLSD-NAAYLHYCPNETIDGIAIDE----TPDFG-----PEVVVTADFSST-ILSA--PLDVSRYG--VIYAGAQKNIG- 225 (386)
T ss_dssp CCCT-TCSCEEECSEETTTTEECCC----CCCCC-----TTCCEEEECTTT-TTSS--CCCGGGCS--EEEEETTTTTC-
T ss_pred hcCC-CCcEEEEECCcCCcCEecCc----hhhhc-----CCCEEEEEcccc-cCCC--CCCccccC--EEEEecccccC-
Confidence 7764 56667776666667875 54 44443 799999999997 4322 23333343 23333339994
Q ss_pred ccceeeEEeCHHHHhhccCCC-----------CcCCC-CChHHHHHHHHHHHHHhcCc----hHHHHHHHHHHHHHHHHH
Q 012363 320 GLPIGAALVTEKVASAINYGD-----------HGSTF-AGSPLVCNAAIAVLDKISNP----AFLASVSKKGHYFKETLK 383 (465)
Q Consensus 320 G~~iG~v~~~~~i~~~~~~~~-----------~~~t~-~~~~~~~~aa~a~L~~~~~~----~~~~~~~~~~~~l~~~l~ 383 (465)
...+|++++++++.+.+.+.. ....+ +.|..+..+..++|+.+.+. ...++.+++.+++++.|+
T Consensus 226 P~G~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~ 305 (386)
T 3qm2_A 226 PAGLTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVID 305 (386)
T ss_dssp CTTEEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 566899999988865443210 01111 22334555666677765433 344445555555555554
Q ss_pred HHHHcCCCcee---e-eccceEEEEEecC--ChHHHHHHHHHCCceEeecCC-CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 012363 384 QKLARNPHVKD---V-RGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKT 456 (465)
Q Consensus 384 ~~~~~~~~~~~---~-~~~g~~~~i~~~~--~~~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~ 456 (465)
+ .+.... . ...+..+.+.++. ....+...|.++||.+..+.. .+.+|+++....|++||+.+++.|+++
T Consensus 306 ~----~~~~~~~~~~~~rs~~iv~f~~~~~~~~~~~~~~L~~~gI~~~~g~~~~~~iRiS~~~~~t~edId~l~~~l~~~ 381 (386)
T 3qm2_A 306 N----SDFYRNDVAQANRSRMNVPFQLADNTLDKVFLEESFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMIDF 381 (386)
T ss_dssp T----CSSEECCBCGGGBCSSEEEEEESSGGGHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred H----CCCcccCCCHHHcCceEEEEECCCccccHHHHHHHHHCCCEEeCCCCCcCeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3 342111 1 1223456666642 235677788899999876532 134999999999999999999999988
Q ss_pred HHH
Q 012363 457 LPV 459 (465)
Q Consensus 457 l~~ 459 (465)
.++
T Consensus 382 ~~~ 384 (386)
T 3qm2_A 382 ERR 384 (386)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 232
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.62 E-value=5.4e-14 Score=137.64 Aligned_cols=298 Identities=8% Similarity=-0.046 Sum_probs=175.2
Q ss_pred CCHHHHHHHHHHHhhccc-ccCC---CC-----CHHHHHHHHHHHhhcCC---CeEEe-cCCHHHHHHHHHHHHHHHhhh
Q 012363 115 GDADWIKAVVDQANVLTH-VSNM---YY-----SIPQIELAKRLVACSFA---DRVFF-SNTGTEANEAAIKFARKFQRH 181 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~-~~~~---~~-----~~~~~~la~~l~~~~~~---~~v~~-~~sG~eA~~~al~~a~~~t~~ 181 (465)
-+|+|++|+.+.+..... ..+. .+ .....+.++.+++.++. ++|+| |+|||+|+++++..+.
T Consensus 16 ~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~~----- 90 (361)
T 3m5u_A 16 LPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLA----- 90 (361)
T ss_dssp CCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC-----
T ss_pred CcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhcC-----
Confidence 579999999987754211 1110 11 12356777788888872 37888 9999999999988554
Q ss_pred cCCCCCCCCceEEEEcCCcccCccc--cccccCCCCcCCCCCCCCCCceEeeCC-------CHHHHHhhcCCCCeEEEEE
Q 012363 182 SNPDSKEPATEFVSFTNSFHGRTMG--ALALTSKEHYRSPFEPVMPGVNFVEYG-------NIEATRKLIQPGKTAAVFV 252 (465)
Q Consensus 182 ~~~~~~~~~~~ii~~~~~yhg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-------d~~~le~~l~~~~~a~vi~ 252 (465)
+++++.....+.+++... +...+ ..+..++.+ +++. + |++ ++++|.+
T Consensus 91 -------~~~~~~~i~~~~~~~~~~~~a~~~G-------------~~v~~~~~~~~g~~~~~~~~-~--l~~-~t~lv~~ 146 (361)
T 3m5u_A 91 -------LNGVCEYANTGVWTKKAIKEAQILG-------------VNVKTVASSEESNFDHIPRV-E--FSD-NADYAYI 146 (361)
T ss_dssp -------CSSCEEEEECSHHHHHHHHHHHHTT-------------CCEEEEEECTTTTSCSCCCC-C--CCT-TSSEEEE
T ss_pred -------CCCeEEEEeCCHHHHHHHHHHHHcC-------------CceEEEecccCcCCCcCChh-h--cCC-CCCEEEE
Confidence 244443332333343211 11111 111111110 2333 3 654 4566666
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccccccccCCcccEEEec--ccCCCccceeeEEeCH
Q 012363 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTE 330 (465)
Q Consensus 253 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~ 330 (465)
..+....|++.+. +++ +|+++++|-+|+ +|.. ....+ ..|++++| |.+| .-.+|++++++
T Consensus 147 ~~~e~~tG~~~~~---------i~~-~~~~~~vD~~q~-~g~~--~id~~----~~d~~~~s~~K~~g-p~G~g~l~~~~ 208 (361)
T 3m5u_A 147 CSNNTIYGTQYQN---------YPK-TKTPLIVDASSD-FFSR--KVDFS----NIALFYGGVQKNAG-ISGLSCIFIRK 208 (361)
T ss_dssp ESEETTTTEECSS---------CCC-CSSCEEEECGGG-TTSS--CCCCT----TEEEEEEETTTTSS-CTTCEEEEEEH
T ss_pred eCCCCCcceeCCc---------ccc-cCCEEEEEcccc-cCCC--CCCcc----cCCEEEEechhccC-CCccEEEEEcH
Confidence 5555556776542 344 499999999997 5322 12222 25778776 9994 45688999999
Q ss_pred HHHhhccC----CC--------CcCCC-CChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHcCCCc-ee-e
Q 012363 331 KVASAINY----GD--------HGSTF-AGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHV-KD-V 395 (465)
Q Consensus 331 ~i~~~~~~----~~--------~~~t~-~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~-~ 395 (465)
++.+.+.+ .. ...++ +.|..+..+..++|+.+.+..=.+++.+....+.+.+.+.+.+.+.+ .. .
T Consensus 209 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~ 288 (361)
T 3m5u_A 209 DMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHA 288 (361)
T ss_dssp HHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESS
T ss_pred HHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccC
Confidence 88766543 10 11222 34566677777888877544112334444444444444444444422 11 1
Q ss_pred ---eccceEEEEEecC--C-hHHHHHHHHHCCceEeecCC-CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 012363 396 ---RGLGLIIGIEFDV--S-ATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPV 459 (465)
Q Consensus 396 ---~~~g~~~~i~~~~--~-~~~~~~~l~~~Gv~v~~~~~-~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~ 459 (465)
......+.+.++. . ..++...|.++||.+..+.. -+.+|+++....|++|++.+++.|+++.++
T Consensus 289 ~~~~rs~~ivsf~~~~~~~~~~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 289 DKKDRSLMNVSFNIAKNKDLEPLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp CGGGBCSSEEEEEESSCTTHHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHcCCeEEEEECCCchhhhHHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 1123456676642 2 24688888899999876532 245999999999999999999999988765
No 233
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.56 E-value=1.4e-13 Score=145.00 Aligned_cols=297 Identities=13% Similarity=0.115 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHhhcCCCeEEecCCH-HHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCCCcCC
Q 012363 140 IPQIELAKRLVACSFADRVFFSNTG-TEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRS 218 (465)
Q Consensus 140 ~~~~~la~~l~~~~~~~~v~~~~sG-~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 218 (465)
....++++++++.++.++.+|+++| +.||..++.++. .++|+||+..++|.....+....+..+.+..
T Consensus 195 g~i~eaE~~lA~~fGa~~a~~v~nGts~An~~ai~al~-----------~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~ 263 (715)
T 3n75_A 195 GPHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSA-----------PAGSTILIDRNCHKSLTHLMMMSDVTPIYFR 263 (715)
T ss_dssp THHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHC-----------CTTCEEEEESSCCHHHHHHHHHSCCEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCceEECcHHHHHHHHHHHHhC-----------CCCCEEEECCCccHHHHHHHHHcCCEEEEEe
Confidence 3377889999999997776666555 699988888665 2689999999887665544333333333221
Q ss_pred CCCCCCCCceEeeCC------CHHHHHhhcCC--CCe---EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEec
Q 012363 219 PFEPVMPGVNFVEYG------NIEATRKLIQP--GKT---AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDE 287 (465)
Q Consensus 219 ~~~~~~~~~~~~~~~------d~~~le~~l~~--~~~---a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DE 287 (465)
+.. .... ++.+ |+++|++++++ +.. ++|+++| +..|.+.+ +++|.++|++++ +|+||
T Consensus 264 ~~~---~~~g-i~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p--n~~G~v~d----l~~I~ela~~~~--livDE 331 (715)
T 3n75_A 264 PTR---NAYG-ILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS--TYDGLLYN----TDFIKKTLDVKS--IHFDS 331 (715)
T ss_dssp CCB---CTTC-CBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS--CTTSEEEC----HHHHHHHCCCSE--EEEEC
T ss_pred ccc---cccc-cccCcccccCCHHHHHHHHhhCcCccCceEEEEECC--CCCCccCC----HHHHHHHhCcCc--EEEcc
Confidence 110 1111 1111 78999999972 112 4677777 44566655 889999998764 79999
Q ss_pred cccCCCCCCcccc-c--cccCCcccE-----EEecccCCCccceeeEEeCHHHH-hhccC-CCCcCCCCChHHHHHHHHH
Q 012363 288 VQCGLGRTGYLWA-H--EHYGIFPDI-----MTLAKPLAGGLPIGAALVTEKVA-SAINY-GDHGSTFAGSPLVCNAAIA 357 (465)
Q Consensus 288 v~~g~gr~g~~~~-~--~~~~~~pdi-----~t~sK~lg~G~~iG~v~~~~~i~-~~~~~-~~~~~t~~~~~~~~~aa~a 357 (465)
+|......+..+. . ...+..+|+ .+++|++++--..|++.+++++. +.+.. .....|.+.+++.+++..+
T Consensus 332 AH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~Aslda 411 (715)
T 3n75_A 332 AWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTET 411 (715)
T ss_dssp TTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHHH
T ss_pred ccccccccCCccccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHHH
Confidence 9974311222110 1 111212454 35679987522346666654321 11111 1123445678888888888
Q ss_pred HHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCC-----ce--eee-------------------ccc------eEE
Q 012363 358 VLDKISN---PAFLASVSKKGHYFKETLKQKLARNPH-----VK--DVR-------------------GLG------LII 402 (465)
Q Consensus 358 ~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~-----~~--~~~-------------------~~g------~~~ 402 (465)
+++.+.. +++++++.++.+++++.|+++....+. +. .+. +.+ +=+
T Consensus 412 A~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~Kl 491 (715)
T 3n75_A 412 AAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKV 491 (715)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTTEE
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCeEE
Confidence 8887752 468899999999999999887431100 00 000 001 112
Q ss_pred EEEec------------CChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHHHHHHh
Q 012363 403 GIEFD------------VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460 (465)
Q Consensus 403 ~i~~~------------~~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~ 460 (465)
.+... ..+..+.+.|.++||.+--... ..+-+.++...|++++++++++|.++-+..
T Consensus 492 ~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d~-~~vl~l~s~g~~~~~~~~L~~aL~~~~~~~ 560 (715)
T 3n75_A 492 TLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGP-YNLLFLFSIGIDKTKALSLLRALTDFKRAF 560 (715)
T ss_dssp EEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEET-TEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecCC-CcEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 22221 2345788889899999876654 556666677889999999999998776544
No 234
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.48 E-value=4.8e-12 Score=124.43 Aligned_cols=298 Identities=8% Similarity=0.009 Sum_probs=172.0
Q ss_pred HHHHhhcC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccC-CCCcCCCCCC
Q 012363 147 KRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS-KEHYRSPFEP 222 (465)
Q Consensus 147 ~~l~~~~~---~~~v~~~~sG~eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~-~~~~~~~~~~ 222 (465)
++|.+. | ....+++|++|-++.+++.++..... +++++||+.. .-|-+...++.+.+ .+.+..+..
T Consensus 124 d~L~~~-G~~~~~~~flVnGsTgg~lamilaa~r~~r-------pg~d~VIvpR-n~HKSv~kAliL~Gl~Pv~V~p~~- 193 (501)
T 3hl2_A 124 DIIKLA-GVHTVANCFVVPMATGMSLTLCFLTLRHKR-------PKAKYIIWPR-IDQKSCFKSMITAGFEPVVIENVL- 193 (501)
T ss_dssp HHHHHT-TCTTCCEEEEESSCHHHHHHHHHHHHHHHC-------TTCCEEEEEC-CCCHHHHHHHHHTTCEEEEECEEE-
T ss_pred HHHHHc-CCCCCCcEEEECcHHHHHHHHHHHHcCccc-------CCCCEEEEec-chHHHHHHHHHHcCCeEEEEeeee-
Confidence 444444 5 34588899988777777666554221 0247788754 55666666665543 333321100
Q ss_pred CCCCceEeeCCCHHHHHhhcCC---CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCccc
Q 012363 223 VMPGVNFVEYGNIEATRKLIQP---GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299 (465)
Q Consensus 223 ~~~~~~~~~~~d~~~le~~l~~---~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~g~~~ 299 (465)
...... -|+++++++|+. +.+++|+..|....++..-+ +++|+++|++||+++++||+|-..-.....+
T Consensus 194 d~~~~~----id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~dd----I~eIaeIch~~gIpllVDeAhGah~~~~~~l 265 (501)
T 3hl2_A 194 EGDELR----TDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDR----LEELAVICANYDIPHIVNNAYGVQSSKCMHL 265 (501)
T ss_dssp ETTEEE----ECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTCTTCHHHHHH
T ss_pred cccccC----CCHHHHHHHHHhcCCCcEEEEEecCCCCCCccccc----HHHHHHHHHHcCCeEEEeCcchhhhhhhhhh
Confidence 001111 189999999972 45666766664443333333 9999999999999999999986531111111
Q ss_pred cccccCC-cccEEEec--ccCCCccceeeEEe-CHHHHhhccCCCCcCCCCChHHH-HHHHHHHHHHhcCchHHHHHHHH
Q 012363 300 AHEHYGI-FPDIMTLA--KPLAGGLPIGAALV-TEKVASAINYGDHGSTFAGSPLV-CNAAIAVLDKISNPAFLASVSKK 374 (465)
Q Consensus 300 ~~~~~~~-~pdi~t~s--K~lg~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~-~~aa~a~L~~~~~~~~~~~~~~~ 374 (465)
....+.. ..|+++.| |.+-.-++.+.+.. ++++++.+... ..++-+++|.. ..+++..+-.-.-.+++++..++
T Consensus 266 p~sA~~~GrAD~vVqS~HK~llvpIGG~ii~~~d~e~l~~~~~~-yPGr~S~Spsldl~~tLL~lGr~Gy~~ll~e~~el 344 (501)
T 3hl2_A 266 IQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKM-YPGRASASPSLDVLITLLSLGSNGYKKLLKERKEM 344 (501)
T ss_dssp HHHHHHHSCCCEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHHT-SCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcEEEecccccceeecCceEEEeCCHHHHHHHHHh-CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222 37888887 65432222233333 55677666432 22333444322 23322222211125667778888
Q ss_pred HHHHHHHHHHHHHcCC-CceeeeccceEEEEEecC-------ChHHHHHHHHHCCce---EeecC---------------
Q 012363 375 GHYFKETLKQKLARNP-HVKDVRGLGLIIGIEFDV-------SATPVVDACRDSGLL---VLTAG--------------- 428 (465)
Q Consensus 375 ~~~l~~~l~~~~~~~~-~~~~~~~~g~~~~i~~~~-------~~~~~~~~l~~~Gv~---v~~~~--------------- 428 (465)
.++|++.|+++...++ .+...+....-+++.++. ....+-..|..++|- +.+.+
T Consensus 345 a~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~ 424 (501)
T 3hl2_A 345 FSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMS 424 (501)
T ss_dssp HHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTT
T ss_pred HHHHHHHHHHHHHhcChhhcCCCCCceeEEEecccccccccccHHHHHHHHHhcCCCcceeecCCCceEECCeeecCccc
Confidence 9999999999877665 222333334444555521 135677778887553 32221
Q ss_pred -----CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhhc
Q 012363 429 -----KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 429 -----~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
+..++-+.....++++|+|.++++|++++.+++++
T Consensus 425 h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~~ 464 (501)
T 3hl2_A 425 HTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKE 464 (501)
T ss_dssp TSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 02356666677889999999999999999988754
No 235
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.48 E-value=2.1e-12 Score=128.42 Aligned_cols=300 Identities=11% Similarity=0.015 Sum_probs=172.4
Q ss_pred HHHHHHHHHhhcC---CCeEEecCCHH-HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCcccCccccccccCCC-Cc
Q 012363 142 QIELAKRLVACSF---ADRVFFSNTGT-EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE-HY 216 (465)
Q Consensus 142 ~~~la~~l~~~~~---~~~v~~~~sG~-eA~~~al~~a~~~t~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~-~~ 216 (465)
...+..++.+.+| ....+++||+| .++.+++.+++.... +++.||+... -|-+...++.+.+.. .+
T Consensus 100 e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~--------~~~~viv~r~-aHkSv~kAl~l~Gl~p~~ 170 (450)
T 3bc8_A 100 TNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRP--------KAKYIIWPRI-DQKSCFKSMVTAGFEPVV 170 (450)
T ss_dssp HHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCT--------TCCEEEEECC-CCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhc--------CCCEEEEECC-cHHHHHHHHHHcCCeeEE
Confidence 4456666767666 33468899987 666666777775321 2567777755 788877776655432 22
Q ss_pred CCCCCCCCCCceEeeCCCHHHHHhhcCC---CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012363 217 RSPFEPVMPGVNFVEYGNIEATRKLIQP---GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 217 ~~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
..+ .+... . .. -|+++|+++|+. +.+++|++.|....+|.+-+ +++|.++|++||++|++||+|.+.-
T Consensus 171 v~~-~~~~~--~-~~-id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd----l~~Ia~ia~~~gi~l~VD~A~G~~~ 241 (450)
T 3bc8_A 171 IEN-VLEGD--E-LR-TDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQS 241 (450)
T ss_dssp ECC-EEETT--E-EE-CCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTC
T ss_pred EEe-eecCc--c-CC-cCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecC----HHHHHHHHHHCCCeEEEECCCchhh
Confidence 111 01011 1 11 289999999962 35778888876655555544 9999999999999999999986532
Q ss_pred CCCccccccccCC-cccEEEec--ccCCCccceeeEEe-CHHHHhhccCCCCcCCCCChH-HHHHHHHHHHHHhcCc---
Q 012363 294 RTGYLWAHEHYGI-FPDIMTLA--KPLAGGLPIGAALV-TEKVASAINYGDHGSTFAGSP-LVCNAAIAVLDKISNP--- 365 (465)
Q Consensus 294 r~g~~~~~~~~~~-~pdi~t~s--K~lg~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~-~~~~aa~a~L~~~~~~--- 365 (465)
+....+....... ..|++++| |.+......+.+.. +++..+.+..... .+-+.+| +...+.+ +. +..+
T Consensus 242 ~~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~~~~-g~~s~SpsL~l~~~l--~~-~G~~g~~ 317 (450)
T 3bc8_A 242 SKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYP-GRASASPSLDVLITL--LS-LGCSGYR 317 (450)
T ss_dssp HHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSC-SCBCSHHHHHHHHHH--HH-HHHHHHH
T ss_pred hhhHhHHHHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHHHHhh-cCCcccHHHHHHHHH--HH-HHHHHHH
Confidence 2111111011111 46888877 87766566677765 4555555532211 1112233 2222222 22 2222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCC-ceeeeccceEEEEEe-------cCChHHHHHHHHHCCc---eEe---------
Q 012363 366 AFLASVSKKGHYFKETLKQKLARNPH-VKDVRGLGLIIGIEF-------DVSATPVVDACRDSGL---LVL--------- 425 (465)
Q Consensus 366 ~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~g~~~~i~~-------~~~~~~~~~~l~~~Gv---~v~--------- 425 (465)
++.++..++.+++++.++++...++. +......+.-..+.+ +.+..++.-.+...|+ -+.
T Consensus 318 ~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~D~tkl~i~~~~~g~sG~~v~~~~~~~~~~ 397 (450)
T 3bc8_A 318 KLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVS 397 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEEET
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeecccccccccCCCceeEEEecCCCCccceeeecccccchh
Confidence 23444467778888888887644442 111111111122322 1234456666666552 222
Q ss_pred ----ec-C------CCCEEEEecCCCCcHHHHHHHHHHHHHHHHHhhhc
Q 012363 426 ----TA-G------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463 (465)
Q Consensus 426 ----~~-~------~~~~lRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 463 (465)
.. + ....+-+..+...+++++++++++|++++++.+++
T Consensus 398 ~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~~~ 446 (450)
T 3bc8_A 398 GHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKE 446 (450)
T ss_dssp TEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 10 1 12456677788899999999999999998877654
No 236
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=98.98 E-value=1.7e-08 Score=98.90 Aligned_cols=316 Identities=15% Similarity=0.135 Sum_probs=163.8
Q ss_pred CCHHHHHHHHHHHhh-ccccc---CCC-CCHH---HHHHHH-HHHhhcCCCe-----EEecCCHHHHHHHHHHHHHHHhh
Q 012363 115 GDADWIKAVVDQANV-LTHVS---NMY-YSIP---QIELAK-RLVACSFADR-----VFFSNTGTEANEAAIKFARKFQR 180 (465)
Q Consensus 115 ~~p~v~~a~~~~~~~-~~~~~---~~~-~~~~---~~~la~-~l~~~~~~~~-----v~~~~sG~eA~~~al~~a~~~t~ 180 (465)
.+|.|.+|+-..+.. +.-++ .+| ..+. .+.|+. +..+.++.+. =+=..||+.||..++.++.
T Consensus 66 ~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All---- 141 (490)
T 3ou5_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL---- 141 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC----
T ss_pred CCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHc----
Confidence 557777776655532 11110 111 1221 333333 4455667332 1345689999999888776
Q ss_pred hcCCCCCCCCceEEEEcCCcccCccccc-------cccCCCCcCCCCCCCCCCceEeeCCCHHHHHhhcCCCCeEEEEEc
Q 012363 181 HSNPDSKEPATEFVSFTNSFHGRTMGAL-------ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE 253 (465)
Q Consensus 181 ~~~~~~~~~~~~ii~~~~~yhg~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a~vi~e 253 (465)
.|+|+|+..+..--|+..... ..++. .|.....+..+....+ |.++++++....++++||+-
T Consensus 142 -------~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~-~~~~~~Y~vd~~t~~I---Dyd~~~~~A~~~kPklIi~G 210 (490)
T 3ou5_A 142 -------QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSI-FFESMPYKLNPKTGLI---DYNQLALTARLFRPRLIIAG 210 (490)
T ss_dssp -------C-CCCEECBC-----------------------------CBCEETTTTEE---CHHHHHHHHHHHCCSEEEEC
T ss_pred -------CCCCEEEecccCCCCcccccccCCCcccccccc-cccccccccCCCCCcc---cHHHHHHHHhhcCCCeEEEC
Confidence 279999998876544443221 11111 1110000111111111 78888887775567788886
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CCCCCCccccccccCCcccEEEec--ccCCCccceeeEEeCH
Q 012363 254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-GLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTE 330 (465)
Q Consensus 254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~gr~g~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~ 330 (465)
...-. ...+ +++++++|++.|++|++|-+|. |+--.|. +. .-+. ..|++|.+ |+|.| -|.|.+++++
T Consensus 211 ~SaY~---r~id---~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~-~p-sP~~-~ADvVTtTTHKTLrG-PrGG~Il~~~ 280 (490)
T 3ou5_A 211 TSAYA---RLID---YARMREVCDEVKAHLLADMAHISGLVAAKV-IP-SPFK-HADIVTTTTHKTLRG-ARSGLIFYRK 280 (490)
T ss_dssp CSSCC---SCCC---HHHHHHHHHHHTCEEEEECGGGHHHHHTTS-SC-CGGG-TCSEEEEESSSTTCS-CSCEEEEEEC
T ss_pred CccCc---cccC---HHHHHHHHhhcccEEEechhhhhhhhcccc-cC-Cccc-cceEEeccccccccC-CCceEEEecc
Confidence 64322 1222 8899999999999999999864 3321221 11 1112 25888776 88865 3667777765
Q ss_pred H---------------HHhhccCCCCcCCCCChHHHHHHHH-HHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHcCCC
Q 012363 331 K---------------VASAINYGDHGSTFAGSPLVCNAAI-AVLDKISN---PAFLASVSKKGHYFKETLKQKLARNPH 391 (465)
Q Consensus 331 ~---------------i~~~~~~~~~~~t~~~~~~~~~aa~-a~L~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~ 391 (465)
+ +.+.+....+.+..+++-.-..||. .++....+ .++.+++.++.+.|.+.|.+. .+.+
T Consensus 281 ~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~--G~~v 358 (490)
T 3ou5_A 281 GVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER--GYSL 358 (490)
T ss_dssp SEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--TCEE
T ss_pred ccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC--CCee
Confidence 2 2222221111122222222222222 22333223 356677777777777777653 3332
Q ss_pred ceeeeccceEEEEEec---CChHHHHHHHHHCCceEee----cCC----CCEEEEecC----CCCcHHHHHHHHHHHHHH
Q 012363 392 VKDVRGLGLIIGIEFD---VSATPVVDACRDSGLLVLT----AGK----GNVVRLVPP----LIISEQELDQAVEILCKT 456 (465)
Q Consensus 392 ~~~~~~~g~~~~i~~~---~~~~~~~~~l~~~Gv~v~~----~~~----~~~lRi~~~----~~~t~e~i~~~l~~l~~~ 456 (465)
+..- ....++.+++. ....+..+.|.+.||.+.. ... ..-|||-.+ ....++|++++.+.|.++
T Consensus 359 vsGg-TdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~ 437 (490)
T 3ou5_A 359 VSGG-TDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEG 437 (490)
T ss_dssp GGGS-CSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ecCC-CCceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHH
Confidence 2211 11235566762 3456667777788998752 211 245899765 346789999999998887
Q ss_pred HH
Q 012363 457 LP 458 (465)
Q Consensus 457 l~ 458 (465)
+.
T Consensus 438 l~ 439 (490)
T 3ou5_A 438 VN 439 (490)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 237
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=49.60 E-value=28 Score=34.24 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=39.7
Q ss_pred HHHHhhcCCCCeEEEEEcccCCC-----CCc---------------ccCCHHHHHHHHHHHHHhCCEEEEecccc
Q 012363 236 EATRKLIQPGKTAAVFVEPIQGE-----GGI---------------YSATKEFLQFLRDACDDAGALLVFDEVQC 290 (465)
Q Consensus 236 ~~le~~l~~~~~a~vi~ep~~~~-----~G~---------------~~~~~~~l~~l~~l~~~~g~llI~DEv~~ 290 (465)
+++++.|.+-.+.+|.+.|++-+ ++. ..-+++.+++|++-|+++|+-||+|=|+-
T Consensus 26 ~e~~~yl~~~G~~~v~~~P~~e~~~~~~~~~~~~~~Y~~~dy~i~~~~Gt~~df~~lv~~aH~~Gi~VilD~V~N 100 (496)
T 4gqr_A 26 LECERYLAPKGFGGVQVSPPNENVAIYNPFRPWWERYQPVSYKLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVIN 100 (496)
T ss_dssp HHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred HHHHHHHHHhCCCEEEeCccccCccCCCCCCCcccccCccCceeCCCCCCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 35566676656888999886432 110 11256789999999999999999999954
No 238
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=47.00 E-value=36 Score=27.73 Aligned_cols=57 Identities=12% Similarity=0.061 Sum_probs=33.1
Q ss_pred CHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHH-HHHHHHHhCCE-EEEecccc
Q 012363 234 NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQF-LRDACDDAGAL-LVFDEVQC 290 (465)
Q Consensus 234 d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~-l~~l~~~~g~l-lI~DEv~~ 290 (465)
+.+.|.++++..++..|++.-..+..|..-...+..+. +..++.++++. ..+||-+|
T Consensus 43 ~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~T 101 (150)
T 1vhx_A 43 GLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERLT 101 (150)
T ss_dssp CHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSSC
T ss_pred HHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCCC
Confidence 67899999987777777766333333333222222222 33455556774 56799776
No 239
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=44.86 E-value=25 Score=30.32 Aligned_cols=38 Identities=18% Similarity=0.174 Sum_probs=29.0
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Q 012363 244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVF 285 (465)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~ 285 (465)
.-..++||||-..+..|.+.. +.++.+++++||+.+|.
T Consensus 157 Gl~Pa~vicEi~~~~dG~mar----~~~l~~fA~~h~l~iit 194 (204)
T 1tks_A 157 GLQPAGVICELVRDEDGLMMR----LDDCIQFGKKHGIKIIN 194 (204)
T ss_dssp TSCSBEEEEEBBCTTTCCBCB----HHHHHHHHHHHTCCEEE
T ss_pred CCCceEEEEEEeECCCCCcCC----HHHHHHHHHHcCCcEEE
Confidence 346789999988344455554 78899999999998874
No 240
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=39.42 E-value=83 Score=22.45 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=32.4
Q ss_pred HHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEec
Q 012363 235 IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDE 287 (465)
Q Consensus 235 ~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DE 287 (465)
..+..++++..+..+|++-..- +++....|..+|+++++.++.-.
T Consensus 16 ~~~v~kai~~gkaklViiA~D~--------~~~~~~~i~~lc~~~~Ip~~~v~ 60 (82)
T 3v7e_A 16 TKQTVKALKRGSVKEVVVAKDA--------DPILTSSVVSLAEDQGISVSMVE 60 (82)
T ss_dssp HHHHHHHHTTTCEEEEEEETTS--------CHHHHHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHHcCCeeEEEEeCCC--------CHHHHHHHHHHHHHcCCCEEEEC
Confidence 4566677776666676665431 34678999999999999988754
No 241
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=36.94 E-value=40 Score=29.58 Aligned_cols=37 Identities=5% Similarity=-0.014 Sum_probs=29.3
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Q 012363 244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVF 285 (465)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~ 285 (465)
+-..++||||-.+.. |.+.. +.++.+++++||+.+|.
T Consensus 176 Gl~Pa~VicEi~~dd-G~mar----~~~l~~fA~~h~l~~it 212 (227)
T 1snn_A 176 NLVPITTICEMMGDD-GNAMS----KNETKRYAEKHNLIYLS 212 (227)
T ss_dssp TSCSEEEEEEEBCTT-SSBCC----HHHHHHHHHHHTCCEEE
T ss_pred CCCceEEEEEEeCCC-CCcCC----HHHHHHHHHHcCCcEEE
Confidence 446899999998765 44444 78899999999998884
No 242
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=36.72 E-value=45 Score=28.77 Aligned_cols=37 Identities=22% Similarity=0.180 Sum_probs=28.2
Q ss_pred CCCeEEEEEcc--cCCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Q 012363 244 PGKTAAVFVEP--IQGEGGIYSATKEFLQFLRDACDDAGALLVF 285 (465)
Q Consensus 244 ~~~~a~vi~ep--~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~ 285 (465)
.-..++||||- .+. .|.+.. +.++.+++++||+.+|.
T Consensus 156 Gl~Pa~vicEiv~~~~-dG~mar----~~~l~~fA~~h~l~~it 194 (206)
T 3mio_A 156 GLQPAGAICEIVSQKD-EGSMAH----TDELRVFADEHGLALIT 194 (206)
T ss_dssp TSCSBEEEEEBBCSSS-TTSBCC----HHHHHHHHHHHTCEEEE
T ss_pred CCCceEEEEEEeeeCC-CCCcCC----HHHHHHHHHHcCCcEEE
Confidence 33578999998 554 455544 78899999999999884
No 243
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=35.68 E-value=39 Score=32.52 Aligned_cols=48 Identities=19% Similarity=0.089 Sum_probs=34.7
Q ss_pred CeEEEEEcccCCCC---Cc-----------ccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012363 246 KTAAVFVEPIQGEG---GI-----------YSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 246 ~~a~vi~ep~~~~~---G~-----------~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
.+.+|.+.|++... |- ..-+.+.++++++.|+++|+-||.|=|....+
T Consensus 34 Gv~~i~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~lv~~~h~~Gi~VilD~V~NH~~ 95 (405)
T 1ht6_A 34 GVTHVWLPPPSHSVSNEGYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVINHRC 95 (405)
T ss_dssp TCCEEEECCCSCBSSTTSSSBCCTTCGGGCTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCC
T ss_pred CCCEEEeCCCccCCCCCCCCccccccCCCccCCCHHHHHHHHHHHHHCCCEEEEEECcCccc
Confidence 46788888865432 11 11235789999999999999999999966443
No 244
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=34.95 E-value=52 Score=32.86 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=34.5
Q ss_pred CeEEEEEcccCCCCCc----c----------cCCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 012363 246 KTAAVFVEPIQGEGGI----Y----------SATKEFLQFLRDACDDAGALLVFDEVQCGL 292 (465)
Q Consensus 246 ~~a~vi~ep~~~~~G~----~----------~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (465)
.+-+|.+.|+...++. - .-+.+.+++|++.|+++|+-||.|=|+-..
T Consensus 45 Gvt~I~L~Pi~~~~~~~~GYd~~dy~~vdp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NHt 105 (549)
T 4aie_A 45 GIDAIWLSPVYQSPGVDNGYDISDYEAIDPQYGTMADMDELISKAKEHHIKIVMDLVVNHT 105 (549)
T ss_dssp TCSEEEECCCEECCCTTTTSSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBC
T ss_pred CCCEEEeCCCcCCCCCCCCcCccCCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECccCC
Confidence 4678888887544321 0 124577999999999999999999996543
No 245
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A*
Probab=33.51 E-value=67 Score=31.55 Aligned_cols=51 Identities=24% Similarity=0.324 Sum_probs=37.1
Q ss_pred cCCCCeEEEEEcccCCCCCc--------c----------cCCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 012363 242 IQPGKTAAVFVEPIQGEGGI--------Y----------SATKEFLQFLRDACDDAGALLVFDEVQCGL 292 (465)
Q Consensus 242 l~~~~~a~vi~ep~~~~~G~--------~----------~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (465)
|++-.+.+|.+.|++..... . .-+.+.++++++.|+++|+-||+|=|+-..
T Consensus 32 L~~LGv~~I~l~Pi~~~~~~~~~~~~~gYd~~dy~idp~~Gt~~d~~~lv~~~h~~Gi~VilD~V~NH~ 100 (471)
T 1jae_A 32 LQPQGFGGVQISPPNEYLVADGRPWWERYQPVSYIINTRSGDESAFTDMTRRCNDAGVRIYVDAVINHM 100 (471)
T ss_dssp TTTTTEEEEECCCCSCBBCCTTCCGGGGGSBCCSCSEETTEEHHHHHHHHHHHHHTTCEEEEEECCSBC
T ss_pred HHHcCCCEEEeCccccccCCCCCCcccccccccccccCCCCCHHHHHHHHHHHHHCCCEEEEEEecccc
Confidence 44446888999997654321 0 113577999999999999999999996544
No 246
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=31.95 E-value=1.6e+02 Score=27.40 Aligned_cols=49 Identities=12% Similarity=0.213 Sum_probs=29.5
Q ss_pred cCCCCeEEEEEcccCCCCC--cc---cC-------C-----HHHHHHHHHHHHHhCCEEE-Eecccc
Q 012363 242 IQPGKTAAVFVEPIQGEGG--IY---SA-------T-----KEFLQFLRDACDDAGALLV-FDEVQC 290 (465)
Q Consensus 242 l~~~~~a~vi~ep~~~~~G--~~---~~-------~-----~~~l~~l~~l~~~~g~llI-~DEv~~ 290 (465)
++...+.+|++++++..-. .+ +. . ..+|..|..+++++|+.+| +..|+.
T Consensus 107 i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~k 173 (333)
T 3io5_A 107 IERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYE 173 (333)
T ss_dssp CCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC--
T ss_pred hhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCeee
Confidence 5656789999999875421 00 00 0 1346667778999999765 555543
No 247
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=30.98 E-value=58 Score=28.34 Aligned_cols=36 Identities=19% Similarity=0.134 Sum_probs=27.7
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Q 012363 245 GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVF 285 (465)
Q Consensus 245 ~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~ 285 (465)
-..++||||-.+.. |.... +.++.+++++||+.+|.
T Consensus 166 l~Pa~vicEi~~~d-G~mar----~~~l~~fA~~h~l~~it 201 (217)
T 1g57_A 166 FKPAGVLCELTNDD-GTMAR----APECIEFANKHNMALVT 201 (217)
T ss_dssp SCSCEEEEEBBCTT-SSBCC----HHHHHHHHHHTTCEEEE
T ss_pred CCceEEEEEEeCCC-CCccC----HHHHHHHHHHcCCCEEE
Confidence 35789999977544 55544 78899999999998874
No 248
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=30.05 E-value=2.2e+02 Score=24.69 Aligned_cols=53 Identities=6% Similarity=0.077 Sum_probs=36.2
Q ss_pred CCCHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 012363 232 YGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292 (465)
Q Consensus 232 ~~d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (465)
..+.+++.+.+. .+..+|+++=.|- .+++.++.+.+++ ..|+.+|+=-.-++|
T Consensus 88 v~~~~di~~~i~-~~~dvV~IDEaQF------f~~~~v~~l~~la-~~gi~Vi~~GLd~DF 140 (219)
T 3e2i_A 88 ISKASEIMTHDL-TNVDVIGIDEVQF------FDDEIVSIVEKLS-ADGHRVIVAGLDMDF 140 (219)
T ss_dssp ESSGGGGGGSCC-TTCSEEEECCGGG------SCTHHHHHHHHHH-HTTCEEEEEEESBCT
T ss_pred eCCHHHHHHHHh-cCCCEEEEechhc------CCHHHHHHHHHHH-HCCCEEEEeeccccc
Confidence 345555555554 3566888888763 3557788888888 689999986555555
No 249
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A*
Probab=28.23 E-value=49 Score=33.39 Aligned_cols=60 Identities=15% Similarity=0.109 Sum_probs=39.7
Q ss_pred CHHHHHhhcC---CCCeEEEEEcccCCCCC----cc----------cCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 012363 234 NIEATRKLIQ---PGKTAAVFVEPIQGEGG----IY----------SATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (465)
Q Consensus 234 d~~~le~~l~---~~~~a~vi~ep~~~~~G----~~----------~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g 293 (465)
|+..+.+.|. .-.+-+|.+.|+...++ .- .-+.+.+++|++.|+++|+-||+|=|....+
T Consensus 30 dl~gi~~~Ldyl~~LGv~~I~L~Pi~~~~~~~~GYd~~dy~~idp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NHts 106 (557)
T 1zja_A 30 DFKGLTEKLDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSS 106 (557)
T ss_dssp CHHHHHHTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCccCCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEeccccc
Confidence 5555444332 12467888888744321 10 1245789999999999999999999965443
No 250
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=25.78 E-value=40 Score=24.39 Aligned_cols=21 Identities=5% Similarity=-0.216 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhCCEEEEecc
Q 012363 268 FLQFLRDACDDAGALLVFDEV 288 (465)
Q Consensus 268 ~l~~l~~l~~~~g~llI~DEv 288 (465)
.-.+|+++++++|+.++.|.-
T Consensus 28 ~A~~I~~~A~e~~VPi~e~~~ 48 (83)
T 3bzy_B 28 KALQIIKLAELYDIPVIEDIP 48 (83)
T ss_dssp HHHHHHHHHHHTTCCEEECHH
T ss_pred HHHHHHHHHHHcCCCEEeCHH
Confidence 367999999999999999975
No 251
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=25.69 E-value=73 Score=27.94 Aligned_cols=38 Identities=11% Similarity=-0.107 Sum_probs=29.0
Q ss_pred CCCeEEEEEcccCCC----------CCcccCCHHHHHHHHHHHHHhCCEEEE
Q 012363 244 PGKTAAVFVEPIQGE----------GGIYSATKEFLQFLRDACDDAGALLVF 285 (465)
Q Consensus 244 ~~~~a~vi~ep~~~~----------~G~~~~~~~~l~~l~~l~~~~g~llI~ 285 (465)
.-..++||||-++.. .|.+.- +.++.+++++||+.+|.
T Consensus 165 Gl~PagVicEi~~~~~~~~~~~~~~dG~mar----~~~l~~fA~~h~L~iit 212 (233)
T 1k4i_A 165 GKRPVAVISEIVDDGQEVEGRAVRAAPGMLR----GDECVAFARRWGLKVCT 212 (233)
T ss_dssp TCCSBEEEEEBEECCEECTTSSCEESCEECC----HHHHHHHHHHTTCEEEE
T ss_pred CCCceEEEEEeCCCcccccccccCCCCCcCC----HHHHHHHHHHcCCcEEE
Confidence 346789999987651 355554 78899999999998885
No 252
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A*
Probab=25.33 E-value=82 Score=27.29 Aligned_cols=39 Identities=15% Similarity=0.340 Sum_probs=26.2
Q ss_pred CeEEEEEcccCCC---CCcc-cCCHHHHHHHHHHHHHhCCEEE
Q 012363 246 KTAAVFVEPIQGE---GGIY-SATKEFLQFLRDACDDAGALLV 284 (465)
Q Consensus 246 ~~a~vi~ep~~~~---~G~~-~~~~~~l~~l~~l~~~~g~llI 284 (465)
....|++.|.... .|.+ ....+|-+.++++|+++|+.+|
T Consensus 125 g~~vil~tp~p~~~~~~~~~~~~~~~y~~~~~~vA~~~~v~~i 167 (233)
T 1k7c_A 125 GAKVILSSQTPNNPWETGTFVNSPTRFVEYAELAAEVAGVEYV 167 (233)
T ss_dssp TCEEEEECCCCCCTTTTSSCCCCCCHHHHHHHHHHHHHTCEEE
T ss_pred CCEEEEECCCCccccCCCccccchHHHHHHHHHHHHHhCCeEE
Confidence 4567778876332 1321 2345778899999999998776
No 253
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}
Probab=24.45 E-value=39 Score=35.26 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=39.6
Q ss_pred CHHHHHhhcC---CCCeEEEEEcccCCCCCc-------------ccCCHHHHHHHHHHHHHhCCEEEEeccccC
Q 012363 234 NIEATRKLIQ---PGKTAAVFVEPIQGEGGI-------------YSATKEFLQFLRDACDDAGALLVFDEVQCG 291 (465)
Q Consensus 234 d~~~le~~l~---~~~~a~vi~ep~~~~~G~-------------~~~~~~~l~~l~~l~~~~g~llI~DEv~~g 291 (465)
|+..+.+.|. .-.+-+|.+.|++..+.. ..-+.+.+++|++.|+++|+-||+|=|...
T Consensus 263 dl~Gi~~kLdyLk~LGvt~IwL~Pi~~s~~~~GYd~~Dy~~idp~~Gt~~df~~Lv~~aH~~GikVilD~V~NH 336 (696)
T 4aee_A 263 DLAGIMKHIDHLEDLGVETIYLTPIFSSTSYHRYDTIDYKSIDKYLGTMEDFEKLVQVLHSRKIKIVLDITMHH 336 (696)
T ss_dssp CHHHHHTTHHHHHHHTCCEEEECCCEEESSSSCCSEEEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEECSSE
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEeccccc
Confidence 5555554443 124678888887543210 112467899999999999999999999543
No 254
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=22.76 E-value=3.2e+02 Score=22.79 Aligned_cols=44 Identities=14% Similarity=0.271 Sum_probs=28.6
Q ss_pred CHHHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Q 012363 234 NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVF 285 (465)
Q Consensus 234 d~~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~ 285 (465)
+.+++.+.+.. +..+|++|-.+. .+++.++.+.++..+ |+.+|+
T Consensus 70 ~~~~i~~~~~~-~~dvViIDEaqf------l~~~~v~~l~~l~~~-~~~Vi~ 113 (191)
T 1xx6_A 70 NSREILKYFEE-DTEVIAIDEVQF------FDDEIVEIVNKIAES-GRRVIC 113 (191)
T ss_dssp SSTHHHHHCCT-TCSEEEECSGGG------SCTHHHHHHHHHHHT-TCEEEE
T ss_pred CHHHHHHHHhc-cCCEEEEECCCC------CCHHHHHHHHHHHhC-CCEEEE
Confidence 33455555542 356888887653 245568888888776 888887
No 255
>1vko_A Inositol-3-phosphate synthase; CE21227, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD; 2.30A {Caenorhabditis elegans} SCOP: c.2.1.3 d.81.1.3
Probab=22.30 E-value=5.1e+02 Score=25.66 Aligned_cols=21 Identities=10% Similarity=0.053 Sum_probs=18.3
Q ss_pred HHHHHHHHHhCCEEEEecccc
Q 012363 270 QFLRDACDDAGALLVFDEVQC 290 (465)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~~ 290 (465)
.++.+++++.|++++=|+..+
T Consensus 307 P~~~elae~~gvpI~GDD~KS 327 (537)
T 1vko_A 307 PGLIELAERHKVFVGGDDFKS 327 (537)
T ss_dssp HHHHHHHHHHTCCEECSCBCC
T ss_pred HHHHHHHHHhCCceecccccc
Confidence 367889999999999999776
No 256
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=22.03 E-value=1e+02 Score=21.66 Aligned_cols=47 Identities=15% Similarity=0.054 Sum_probs=27.7
Q ss_pred ChHHHHHHHHHCCceEeecCCCCEEEEecCCCCcHHHHHHHHHHHHH
Q 012363 409 SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCK 455 (465)
Q Consensus 409 ~~~~~~~~l~~~Gv~v~~~~~~~~lRi~~~~~~t~e~i~~~l~~l~~ 455 (465)
++..+...|...|+-......+.+-|+.+....+.++.+.+++.|++
T Consensus 22 ~A~~l~~~L~~~G~~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 22 QAETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp HHHHHHHHHHHHTCCEEEEECSSSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 45667777777775322111224556666555567777777777765
No 257
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=21.67 E-value=66 Score=31.20 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHHhCCEEEEeccccCC
Q 012363 265 TKEFLQFLRDACDDAGALLVFDEVQCGL 292 (465)
Q Consensus 265 ~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (465)
+.+.++++++.|+++|+-||+|=|....
T Consensus 68 t~~df~~lv~~aH~~Gi~VilD~V~NH~ 95 (441)
T 1lwj_A 68 SEREFKEMIEAFHDSGIKVVLDLPIHHT 95 (441)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECTTBC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCCCcc
Confidence 3577888899999999999999885443
No 258
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=21.38 E-value=54 Score=24.52 Aligned_cols=22 Identities=5% Similarity=-0.046 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhCCEEEEecc
Q 012363 267 EFLQFLRDACDDAGALLVFDEV 288 (465)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv 288 (465)
..-++|++++++||+.++.|.-
T Consensus 42 ~~A~~I~~~A~e~gVPi~e~~~ 63 (97)
T 3t7y_A 42 LRAKRIIAEAEKYGVPIMRNVP 63 (97)
T ss_dssp HHHHHHHHHHHHHTCCEEECHH
T ss_pred HHHHHHHHHHHHcCCeEEECHH
Confidence 3367899999999999999975
No 259
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=21.36 E-value=65 Score=28.57 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=30.0
Q ss_pred HHHHHhhcCCCCeEEEEE-cccCC---CCCcccCCHHH---HHHHHHHHHHhCCEEEEec
Q 012363 235 IEATRKLIQPGKTAAVFV-EPIQG---EGGIYSATKEF---LQFLRDACDDAGALLVFDE 287 (465)
Q Consensus 235 ~~~le~~l~~~~~a~vi~-ep~~~---~~G~~~~~~~~---l~~l~~l~~~~g~llI~DE 287 (465)
++.++++++. .+.+|.+ ++..+ -.|. ....++ .++|.++|++|++.||+++
T Consensus 46 ~~~~~~al~~-Gv~~vqlR~K~~~~~~~~~~-l~~~~~~~~a~~l~~l~~~~~~~liInd 103 (243)
T 3o63_A 46 AQFAEAALAG-GVDIIQLRDKGSPGELRFGP-LQARDELAACEILADAAHRYGALFAVND 103 (243)
T ss_dssp HHHHHHHHHT-TCSEEEECCTTCHHHHHHCS-CCHHHHHHHHHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHC-CCCEEEEccCCCCccccccC-CCHHHHHHHHHHHHHHHHhhCCEEEEeC
Confidence 4677777764 3555555 33311 0010 112333 4789999999999888854
No 260
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=20.77 E-value=57 Score=24.17 Aligned_cols=22 Identities=18% Similarity=0.148 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhCCEEEEecc
Q 012363 267 EFLQFLRDACDDAGALLVFDEV 288 (465)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv 288 (465)
..-.+|+++++++|+.++.|.-
T Consensus 27 ~~A~~I~e~A~e~gVPi~e~~~ 48 (93)
T 2vt1_B 27 QCALAVRKYANEVGIPTVRDVK 48 (93)
T ss_dssp HHHHHHHHHHHHTTCCEEECHH
T ss_pred HHHHHHHHHHHHcCCCEEECHH
Confidence 3367999999999999999975
No 261
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=20.22 E-value=59 Score=24.36 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhCCEEEEecc
Q 012363 267 EFLQFLRDACDDAGALLVFDEV 288 (465)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv 288 (465)
..-.+|+++++++|+.++.|.-
T Consensus 27 ~~A~~I~e~A~e~gVPi~e~~~ 48 (98)
T 3c01_E 27 QRALAVRAYAEKVGVPVIVDIK 48 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEECHH
T ss_pred HHHHHHHHHHHHcCCCeecCHH
Confidence 3367999999999999999975
No 262
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=20.12 E-value=70 Score=31.12 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHHhCCEEEEecccc
Q 012363 265 TKEFLQFLRDACDDAGALLVFDEVQC 290 (465)
Q Consensus 265 ~~~~l~~l~~l~~~~g~llI~DEv~~ 290 (465)
+.+.++++++.|+++|+-||.|=|+-
T Consensus 63 t~~dfk~Lv~~aH~~Gi~VilD~V~N 88 (448)
T 1g94_A 63 NRAQFIDMVNRCSAAGVDIYVDTLIN 88 (448)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEeec
Confidence 45779999999999999999999954
No 263
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=20.09 E-value=1.8e+02 Score=22.95 Aligned_cols=43 Identities=23% Similarity=0.353 Sum_probs=28.5
Q ss_pred HHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Q 012363 236 EATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVF 285 (465)
Q Consensus 236 ~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~ 285 (465)
..+.++++..+..+||+-..- .+.+....|..+|+++++.++.
T Consensus 47 ~~v~kal~~gkaklViiA~D~-------~~~~~~~~l~~lc~~~~IP~~~ 89 (135)
T 2aif_A 47 NEATKALNRGIAEIVLLAADA-------EPLEILLHLPLVCEDKNTPYVF 89 (135)
T ss_dssp HHHHHHHHTTCEEEEEEETTC-------SCHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHcCCCeEEEEecCC-------ChHHHHhHHHHHHHhcCCcEEE
Confidence 556666665556666654431 2334468999999999998764
No 264
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.01 E-value=1.1e+02 Score=22.65 Aligned_cols=42 Identities=14% Similarity=0.058 Sum_probs=28.8
Q ss_pred HHHHhhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Q 012363 236 EATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVF 285 (465)
Q Consensus 236 ~~le~~l~~~~~a~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~ 285 (465)
+...++++..+..+||+-... +++..+.|..+|+++++.++.
T Consensus 21 ~~v~kai~~gka~lViiA~D~--------~~~~~~~i~~~c~~~~ip~~~ 62 (99)
T 3j21_Z 21 NETIRLAKTGGAKLIIVAKNA--------PKEIKDDIYYYAKLSDIPVYE 62 (99)
T ss_dssp HHHHHHHHHTCCSEEEEECCC--------CHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHcCCccEEEEeCCC--------CHHHHHHHHHHHHHcCCCEEE
Confidence 455666664455566654431 467789999999999998753
Done!