BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012364
(465 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 65/154 (42%), Gaps = 30/154 (19%)
Query: 273 CTICGKGFKRDANLRMHMRGHGDE--YKTPAA---------LAKPHKESSSEPMLIKRYS 321
C CGK F R +L H R H E YK P L + + + E K Y
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGE----KPYK 79
Query: 322 CPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHC-DKSYVCSRCNTKKFSVIADLKTHEK- 379
CP G K F + ++RTH +K Y C C K FS +A L+ H++
Sbjct: 80 CPECG-------KSFSQRANLRA----HQRTHTGEKPYACPECG-KSFSQLAHLRAHQRT 127
Query: 380 HCGKDKWLC-SCGTTFSRKDKLFGHIALFQGHTP 412
H G+ + C CG +FSR+D L H G P
Sbjct: 128 HTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKP 161
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 59/140 (42%), Gaps = 36/140 (25%)
Query: 273 CTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKD 332
C CGK F + ANLR H R H E K Y+CP G
Sbjct: 80 CPECGKSFSQRANLRAHQRTHTGE---------------------KPYACPECG------ 112
Query: 333 HKKFQPLKTILCVKNHYKRTHC-DKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLC-S 389
K F L + ++RTH +K Y C C K FS +L TH++ H G+ + C
Sbjct: 113 -KSFSQLAHLRA----HQRTHTGEKPYKCPECG-KSFSREDNLHTHQRTHTGEKPYKCPE 166
Query: 390 CGTTFSRKDKLFGHIALFQG 409
CG +FSR+D L H G
Sbjct: 167 CGKSFSRRDALNVHQRTHTG 186
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 349 YKRTHC-DKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLC-SCGTTFSRKDKLFGHIA 405
++RTH +K Y C C K FS +DL+ H++ H G+ + C CG +FSR D L H
Sbjct: 23 HQRTHTGEKPYKCPECG-KSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQR 81
Query: 406 LFQ 408
Q
Sbjct: 82 THQ 84
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 347 NHYKRTHC-DKSYVCSRCN---TKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFG 402
N +K +H +K Y C C +K + +++H+ GK SCG FSR D L G
Sbjct: 24 NRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNG 83
Query: 403 HI 404
HI
Sbjct: 84 HI 85
>pdb|3TFD|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66w Mutant
pdb|3TFD|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66w Mutant
pdb|3TFE|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66w Mutant Under 6 Atm Of Xenon
pdb|3TFE|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66w Mutant Under 6 Atm Of Xenon
Length = 189
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 103 KAMLNNLSFLEQKIHELQDLVHLIVGRRSQILGRPDE--LVAQQQQLITADLTSIIVQLI 160
KA L ++ F D+ + +VG S++LG+P E L+A + +T +L+
Sbjct: 28 KAGLEDIDFFVGMEAYSDDVTYHLVGAASEVLGKPAEEWLIAFGEYWVTYTSEEGYGELL 87
Query: 161 STAGSLLPSMKHTLSAATPSMG 182
++AG LP L +G
Sbjct: 88 ASAGDSLPEFMENLDNLHARVG 109
>pdb|2O09|A Chain A, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120
pdb|2O09|B Chain B, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120
pdb|2O0C|A Chain A, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120 Complexed To No
pdb|2O0C|B Chain B, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120 Complexed To No
pdb|2O0G|A Chain A, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120 Complexed To Co
pdb|2O0G|B Chain B, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120 Complexed To Co
pdb|3L6J|A Chain A, Structure Of Cinaciguat (Bay 58-2667) Bound To Nostoc
H-Nox Domain
pdb|3L6J|B Chain B, Structure Of Cinaciguat (Bay 58-2667) Bound To Nostoc
H-Nox Domain
pdb|3TF8|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120
pdb|3TF8|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120
pdb|3TF9|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120 Under 1 Atm Of Xenon
pdb|3TF9|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120 Under 1 Atm Of Xenon
pdb|3TFA|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120 Under 6 Atm Of Xenon
pdb|3TFA|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120 Under 6 Atm Of Xenon
Length = 189
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 103 KAMLNNLSFLEQKIHELQDLVHLIVGRRSQILGRPDE--LVAQQQQLITADLTSIIVQLI 160
KA L ++ F D+ + +VG S++LG+P E L+A + +T +L+
Sbjct: 28 KAGLEDIDFFVGMEAYSDDVTYHLVGAASEVLGKPAEELLIAFGEYWVTYTSEEGYGELL 87
Query: 161 STAGSLLPSMKHTLSAATPSMG 182
++AG LP L +G
Sbjct: 88 ASAGDSLPEFMENLDNLHARVG 109
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 51/126 (40%), Gaps = 21/126 (16%)
Query: 260 LEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESS--SEPMLI 317
+E I PH C K F+ ++ +R H+ HG A K ESS L+
Sbjct: 1 MEPRTIACPHK----GCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLV 56
Query: 318 ----KRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVC--SRCNTKKFSVI 371
K + C + GC + ++ H + D+ YVC CN KKF+
Sbjct: 57 HTGEKPFQCTFEGCGKR--------FSLDFNLRTHVRIHTGDRPYVCPFDGCN-KKFAQS 107
Query: 372 ADLKTH 377
+LK+H
Sbjct: 108 TNLKSH 113
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 355 DKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTP 412
DK Y C RC F +L +H+ H G+ + C+ CG F+R L H + G P
Sbjct: 15 DKPYKCDRCQA-SFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 273 CTICGKGFKRDANLRMHMRGHGDE 296
C ICG F R ANL+ H R H E
Sbjct: 48 CNICGAQFNRPANLKTHTRIHSGE 71
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 356 KSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLC-SCGTTFSRKDKLFGHIALFQGHTPA 413
+ Y C C K FS +DL H + H G+ + C CG F ++ L GH + G P+
Sbjct: 17 RRYKCDECG-KSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
>pdb|3TFG|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66wL67W DOUBLE MUTANT
pdb|3TFG|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66wL67W DOUBLE MUTANT
Length = 189
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 103 KAMLNNLSFLEQKIHELQDLVHLIVGRRSQILGRPDE--LVAQQQQLITADLTSIIVQLI 160
KA L ++ F D+ + +VG S++LG+P E +A + +T +L+
Sbjct: 28 KAGLEDIDFFVGMEAYSDDVTYHLVGAASEVLGKPAEEWWIAFGEYWVTYTSEEGYGELL 87
Query: 161 STAGSLLPSMKHTLSAATPSMG 182
++AG LP L +G
Sbjct: 88 ASAGDSLPEFMENLDNLHARVG 109
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 352 THCDKSYVCSRCNTKKFSVIADLKTH--EK--HCGKDKWLCSCGTTFSRKDKLFGHIALF 407
TH C + TK + A L+TH EK HC D CG F+R D+L H
Sbjct: 6 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWD----GCGWKFARSDELTRHYRKH 61
Query: 408 QGHTP 412
GH P
Sbjct: 62 TGHRP 66
Score = 28.5 bits (62), Expect = 8.7, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 32/112 (28%)
Query: 270 THFCTI--CGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGC 327
TH C CGK + + ++L+ H+R H E K Y C + GC
Sbjct: 6 THTCDYAGCGKTYTKSSHLKAHLRTHTGE---------------------KPYHCDWDGC 44
Query: 328 KRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK 379
KF + HY++ + + C +C+ + FS L H K
Sbjct: 45 GW-----KFARSDEL---TRHYRKHTGHRPFQCQKCD-RAFSRSDHLALHMK 87
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 273 CTICGKGFKRDANLRMHMRGHGDE--YKTPAALAKPHKESSSEPMLIKRYSCPYAG 326
C++C + F+R LR+HM H E YK + + ++ + +IK +S P +G
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPSSG 124
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 352 THCDKSYVCSRCNTKKFSVIADLKTH--EK--HCGKDKWLCSCGTTFSRKDKLFGHIALF 407
TH C + TK + A L+TH EK HC D CG F+R D+L H
Sbjct: 5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWD----GCGWKFARSDELTRHYRKH 60
Query: 408 QGHTP 412
GH P
Sbjct: 61 TGHRP 65
Score = 28.5 bits (62), Expect = 9.1, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 32/112 (28%)
Query: 270 THFCTI--CGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGC 327
TH C CGK + + ++L+ H+R H E K Y C + GC
Sbjct: 5 THTCDYAGCGKTYTKSSHLKAHLRTHTGE---------------------KPYHCDWDGC 43
Query: 328 KRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK 379
KF + HY++ + + C +C+ + FS L H K
Sbjct: 44 GW-----KFARSDEL---TRHYRKHTGHRPFQCQKCD-RAFSRSDHLALHMK 86
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 271 HFCTICGKGFKRDANLRMHMRGH 293
H C +CGK F R L+ HMR H
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCH 31
>pdb|3TFF|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L67w Mutant
pdb|3TFF|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L67w Mutant
Length = 189
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 103 KAMLNNLSFLEQKIHELQDLVHLIVGRRSQILGRPDE--LVAQQQQLITADLTSIIVQLI 160
KA L ++ F D+ + +VG S++LG+P E +A + +T +L+
Sbjct: 28 KAGLEDIDFFVGMEAYSDDVTYHLVGAASEVLGKPAEELWIAFGEYWVTYTSEEGYGELL 87
Query: 161 STAGSLLPSMKHTLSAATPSMG 182
++AG LP L +G
Sbjct: 88 ASAGDSLPEFMENLDNLHARVG 109
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 34/132 (25%)
Query: 276 CGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKK 335
C K + + ++L+MH R H E KP Y C + C+R +
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGE--------KP-------------YQCDFKDCER-----R 47
Query: 336 FQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLC---SCG 391
F + K H +R K + C C +KFS LKTH + H G+ + C SC
Sbjct: 48 FSRSDQL---KRHQRRHTGVKPFQCKTCQ-RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQ 103
Query: 392 TTFSRKDKLFGH 403
F+R D+L H
Sbjct: 104 KKFARSDELVRH 115
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 273 CTICGKGFKRDANLRMHMRGHGDEYKTPA 301
C ICGK FKR + L H+ H D P
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPC 32
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 273 CTICGKGFKRDANLRMHMRGHGDEYKTPAAL 303
C +C + F R +L+ H R H +E P L
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGL 35
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 273 CTICGKGFKRDANLRMHMRGH-GDEYKTPAA 302
C CGKG+ R NL MH R H G++ P++
Sbjct: 15 CEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS 45
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 271 HF-CTICGKGFKRDANLRMHMRGHGDE 296
HF CT CGK F R + L MH + H E
Sbjct: 12 HFECTECGKAFTRKSTLSMHQKIHTGE 38
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 273 CTICGKGFKRDANLRMHMRGHGDE 296
C +CGK F A+L H+R H E
Sbjct: 15 CNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 366 KKFSVIADLKTHEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTP 412
++FS ADL H + H G+ + C C FSR D L HI G P
Sbjct: 14 RRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 273 CTICGKGFKRDANLRMHMRGHGDEYKTPAA 302
CT CGK F+ NL H R H E P++
Sbjct: 15 CTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 273 CTICGKGFKRDANLRMHMRGHGDE 296
C CG+ F + NL +H R H DE
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDE 43
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 5.8, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 273 CTICGKGFKRDANLRMHMRGH-GDEYKTPAA 302
C CGKG+KR +L H R H G++ P++
Sbjct: 15 CVECGKGYKRRLDLDFHQRVHTGEKLSGPSS 45
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 273 CTICGKGFKRDANLRMHMRGHGDE 296
C+ CGK F R + L MH R H E
Sbjct: 15 CSECGKAFARKSTLIMHQRIHTGE 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,142,723
Number of Sequences: 62578
Number of extensions: 578459
Number of successful extensions: 1241
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1174
Number of HSP's gapped (non-prelim): 85
length of query: 465
length of database: 14,973,337
effective HSP length: 102
effective length of query: 363
effective length of database: 8,590,381
effective search space: 3118308303
effective search space used: 3118308303
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)