BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012365
         (465 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|255563673|ref|XP_002522838.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537922|gb|EEF39536.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 867

 Score =  589 bits (1519), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 279/440 (63%), Positives = 353/440 (80%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           +H  LE+ PSS SY+KLI YSCDLLKVH ALD+V+QM + +L  S + +NSIL ACEES+
Sbjct: 417 LHVMLEMPPSSKSYEKLIIYSCDLLKVHAALDIVDQMCKADLTLSIDVLNSILRACEESF 476

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           EFNLV++IY +ICHHNL PN+ETFRSMI L VK+KDF  A+ +LDDLK+  L PTASMYN
Sbjct: 477 EFNLVQQIYSLICHHNLTPNNETFRSMIKLRVKMKDFCGAHDMLDDLKKFKLTPTASMYN 536

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQ 180
           AIMAG FR+K++ G LMVLK+ME A+VKPDSQT+S LI NC++E  I KYYE+LK  G  
Sbjct: 537 AIMAGCFREKNINGGLMVLKKMELADVKPDSQTYSNLIANCNSENQISKYYEELKFVGIH 596

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
           ++K +FMALINAY TCG+FEKA+QV+LD  IP+++  E+KSALVSALASHG+ SDA++VY
Sbjct: 597 VSKQIFMALINAYATCGQFEKAKQVLLDKGIPIENVIEIKSALVSALASHGQMSDALVVY 656

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQ 300
           EEIKEAG N+EP++VI LIEH  SEGEL+RL++LLEE+ DP+Y +DGCCR++L C+R K 
Sbjct: 657 EEIKEAGGNMEPKSVICLIEHYQSEGELSRLLKLLEELQDPNYCVDGCCRVMLWCIRNKH 716

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS 360
           LSSA +LLKQLKD+   DE+ M+  F E+F  IA  +P D+ IGLDLLQ IKDEL + PS
Sbjct: 717 LSSAVNLLKQLKDRLSSDELTMQVIFDEVFSLIAEMEPTDLLIGLDLLQVIKDELCVCPS 776

Query: 361 RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420
           RK LDFLL AC  A+DL  +  IWKEY  AG PYNV+SYL MY+A L+SG+ +SA  +L+
Sbjct: 777 RKSLDFLLSACAKAKDLTNSLFIWKEYHAAGYPYNVISYLRMYQALLSSGDYRSAKVILA 836

Query: 421 KMPKDDPHVRFVIQACKQTY 440
           ++ KDDPHVR +IQAC++TY
Sbjct: 837 EIQKDDPHVRRMIQACQKTY 856


>gi|302143218|emb|CBI20513.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 278/441 (63%), Positives = 351/441 (79%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           +HA+L +TPSS SY KL+TY CD  KVH ALD+V+QM +  L  S E  +SIL A EES+
Sbjct: 158 LHAQLVVTPSSTSYNKLVTYCCDSFKVHAALDIVDQMCEAGLTLSIEMFHSILRASEESF 217

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           EFNLV RIY +ICH +L+PN ETFR MI+L+VK+KDFD AY LL D+K++NL PTA +YN
Sbjct: 218 EFNLVHRIYSVICHQSLEPNCETFRIMINLHVKMKDFDGAYDLLKDMKKINLTPTAGIYN 277

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQ 180
           AIM GYFR+K++ G LMVLK+M  A+VKPDSQTF YL++NC  EEDIIKYYE+LK AG Q
Sbjct: 278 AIMGGYFREKNIYGGLMVLKQMGDADVKPDSQTFCYLLNNCECEEDIIKYYEKLKCAGVQ 337

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
           +TK+VFMALINAY +CG+FEKA+QVVLD  +P+KS +E+KS LVSALA HG+ SDA  +Y
Sbjct: 338 VTKHVFMALINAYASCGQFEKAKQVVLDKGVPIKSLNEIKSVLVSALALHGQISDAFDIY 397

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQ 300
           EEIK +G NLEP+A+I LIE+  SEG+L RL+QLLEE++DPDY ++G CR++L+CVR+  
Sbjct: 398 EEIKNSGFNLEPKAIILLIEYHQSEGDLTRLLQLLEELNDPDYRVEGSCRILLYCVRYNH 457

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS 360
           LSSA DLLKQLKD F D+E+AME    E+F  IA  +P +++IGLDLL  IK+ELGL PS
Sbjct: 458 LSSAIDLLKQLKDTFHDNELAMEAILDEVFSLIAEIEPVNLKIGLDLLTAIKEELGLRPS 517

Query: 361 RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420
           RK LDFLL ACVN +DL  + LIW+EY+ AG  +NVLS+L MY+A LA G+ KSA+ +L 
Sbjct: 518 RKSLDFLLAACVNGKDLDNSRLIWREYQTAGFTHNVLSFLRMYQACLACGDHKSAANILH 577

Query: 421 KMPKDDPHVRFVIQACKQTYT 441
           K+PKDDPHV  VI+AC+ TY 
Sbjct: 578 KIPKDDPHVCCVIKACQTTYA 598


>gi|359493757|ref|XP_002279701.2| PREDICTED: pentatricopeptide repeat-containing protein At4g04790,
           mitochondrial-like [Vitis vinifera]
          Length = 848

 Score =  585 bits (1509), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 278/441 (63%), Positives = 351/441 (79%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           +HA+L +TPSS SY KL+TY CD  KVH ALD+V+QM +  L  S E  +SIL A EES+
Sbjct: 388 LHAQLVVTPSSTSYNKLVTYCCDSFKVHAALDIVDQMCEAGLTLSIEMFHSILRASEESF 447

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           EFNLV RIY +ICH +L+PN ETFR MI+L+VK+KDFD AY LL D+K++NL PTA +YN
Sbjct: 448 EFNLVHRIYSVICHQSLEPNCETFRIMINLHVKMKDFDGAYDLLKDMKKINLTPTAGIYN 507

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQ 180
           AIM GYFR+K++ G LMVLK+M  A+VKPDSQTF YL++NC  EEDIIKYYE+LK AG Q
Sbjct: 508 AIMGGYFREKNIYGGLMVLKQMGDADVKPDSQTFCYLLNNCECEEDIIKYYEKLKCAGVQ 567

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
           +TK+VFMALINAY +CG+FEKA+QVVLD  +P+KS +E+KS LVSALA HG+ SDA  +Y
Sbjct: 568 VTKHVFMALINAYASCGQFEKAKQVVLDKGVPIKSLNEIKSVLVSALALHGQISDAFDIY 627

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQ 300
           EEIK +G NLEP+A+I LIE+  SEG+L RL+QLLEE++DPDY ++G CR++L+CVR+  
Sbjct: 628 EEIKNSGFNLEPKAIILLIEYHQSEGDLTRLLQLLEELNDPDYRVEGSCRILLYCVRYNH 687

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS 360
           LSSA DLLKQLKD F D+E+AME    E+F  IA  +P +++IGLDLL  IK+ELGL PS
Sbjct: 688 LSSAIDLLKQLKDTFHDNELAMEAILDEVFSLIAEIEPVNLKIGLDLLTAIKEELGLRPS 747

Query: 361 RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420
           RK LDFLL ACVN +DL  + LIW+EY+ AG  +NVLS+L MY+A LA G+ KSA+ +L 
Sbjct: 748 RKSLDFLLAACVNGKDLDNSRLIWREYQTAGFTHNVLSFLRMYQACLACGDHKSAANILH 807

Query: 421 KMPKDDPHVRFVIQACKQTYT 441
           K+PKDDPHV  VI+AC+ TY 
Sbjct: 808 KIPKDDPHVCCVIKACQTTYA 828


>gi|224126305|ref|XP_002319806.1| predicted protein [Populus trichocarpa]
 gi|222858182|gb|EEE95729.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 287/440 (65%), Positives = 372/440 (84%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           +H  ++++PSS SY+KL+ Y+C+LLKVH+ALD+V+QM +  L  S  TI+SIL+A EES+
Sbjct: 323 LHMIMKMSPSSTSYEKLVVYNCNLLKVHLALDIVDQMCKEGLTISINTIHSILNASEESF 382

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           +FNLVRRIY +I H +L PN+ETFRSMISL+VK+KDF+ AY LLDDLK++NL PTASMYN
Sbjct: 383 DFNLVRRIYSLIYHLDLTPNNETFRSMISLSVKMKDFEGAYGLLDDLKKLNLAPTASMYN 442

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQ 180
           AIM GYFR+K+++GALMVLK+M+ A+VKPDS ++SYLI NC+NEE+IIKYYE++K AG Q
Sbjct: 443 AIMGGYFREKNIRGALMVLKQMKLADVKPDSSSYSYLISNCNNEEEIIKYYEEMKVAGIQ 502

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
           ++K +FMALINAY TCG+FEKA+QV+LD E P+K  +E++S LVSALASHG+ +DA+ +Y
Sbjct: 503 VSKQIFMALINAYATCGQFEKAKQVLLDKEFPIKHLNEIRSVLVSALASHGQMTDALNLY 562

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQ 300
           EE+K+AG NLEP+AVI+LIEH++SEGE +RL++LLEE+ D +YW+DGC R+IL+C+R K 
Sbjct: 563 EEMKQAGSNLEPKAVISLIEHVDSEGEQSRLLKLLEELDDHNYWVDGCFRVILYCIRNKD 622

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS 360
           L SA DLLKQLKD+F DDE+AME  F E+F Q+A T+P +V+IG+DLLQ IKDELG  PS
Sbjct: 623 LRSAVDLLKQLKDRFSDDELAMEVLFDEVFSQVAETEPANVRIGMDLLQAIKDELGASPS 682

Query: 361 RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420
           RKCLDFLL ACVNA+DL  + L+WKEY+ AGLPYNV SYL MY+A LASG   SA  +L+
Sbjct: 683 RKCLDFLLTACVNAKDLGNSLLVWKEYQAAGLPYNVTSYLRMYQALLASGGHVSAKVMLN 742

Query: 421 KMPKDDPHVRFVIQACKQTY 440
           K+PKDDPHVR VIQ C++TY
Sbjct: 743 KIPKDDPHVRIVIQECQRTY 762


>gi|449468642|ref|XP_004152030.1| PREDICTED: pentatricopeptide repeat-containing protein At4g04790,
            mitochondrial-like [Cucumis sativus]
          Length = 1295

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 250/449 (55%), Positives = 337/449 (75%), Gaps = 1/449 (0%)

Query: 1    MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
            MH +L I PSSASY+KLI Y C L KVH+ALD+  +M   +  PST  ++SILHA +ES 
Sbjct: 839  MHFELVINPSSASYEKLICYCCGLFKVHMALDIANEMCDADFTPSTGVLHSILHALDESC 898

Query: 61   EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
            E+NLV ++Y +IC HNLKP+SE  R MI+L+VK+KDF  AY +L + ++MN++PT ++YN
Sbjct: 899  EYNLVHQVYSLICRHNLKPDSEILRGMINLHVKMKDFKGAYDMLKEWEKMNVIPTTNLYN 958

Query: 121  AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQ 180
            AIMAGYFR+K+     MVLK+ME A+VKPDS TFSYLI NC  EEDIIKYY++L  +G Q
Sbjct: 959  AIMAGYFREKNTSDGFMVLKQMELADVKPDSITFSYLISNCECEEDIIKYYKELNHSGVQ 1018

Query: 181  ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
             TK+VFMALINAY   G+FEKA+QV+ D  IPVK+ +EV+  LVSALAS+G+T+DA+ +Y
Sbjct: 1019 ATKHVFMALINAYAAHGQFEKAKQVISDEGIPVKNLNEVRCVLVSALASNGQTADALKIY 1078

Query: 241  EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV-HDPDYWMDGCCRLILHCVRFK 299
            +E+K+AGC+L+ +AV +LIEH   +G LNR++QLL ++ HD + W+  C R+IL  V+  
Sbjct: 1079 DEMKQAGCDLDCKAVSSLIEHYPFDGPLNRMLQLLGDLHHDLNGWIHCCSRIILFSVKHN 1138

Query: 300  QLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPP 359
             LSS  DLLKQL  +  +DE  M   F E+FC IA ++P  ++IGL LL+FIK++LGL P
Sbjct: 1139 DLSSTVDLLKQLSYRCTNDETIMGVTFDEVFCLIANSEPTYLEIGLQLLKFIKNDLGLSP 1198

Query: 360  SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLL 419
             R+CLDFLLG C NA+D + + LIWKEYENAGL YN +SYL MY+A LASG+ KSA  LL
Sbjct: 1199 PRRCLDFLLGTCANAKDAESSRLIWKEYENAGLLYNTISYLKMYQALLASGDSKSAKLLL 1258

Query: 420  SKMPKDDPHVRFVIQACKQTYTIPSLQKE 448
             K+PKDD  V ++I+ C++ Y+  + +K+
Sbjct: 1259 GKIPKDDADVCYIIKECERVYSSTAKKKK 1287


>gi|79464834|ref|NP_192388.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635640|sp|Q6NQ81.2|PP304_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g04790, mitochondrial; Flags: Precursor
 gi|332657026|gb|AEE82426.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 821

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 223/441 (50%), Positives = 332/441 (75%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           MH +L++ PSS SY+KL+ YSCD  +V  ALDVVE+M +  L+ S + ++S+LHA +E  
Sbjct: 363 MHEELDVMPSSTSYEKLVKYSCDSNEVVTALDVVEKMGEAGLMISADILHSLLHAIDEVL 422

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           EF+LVRRI+ ++C  ++KPN+E FRS+I L  +IKDF+ AY++L +LK  NL P +SM+N
Sbjct: 423 EFDLVRRIHSIMCTKSVKPNTENFRSIIRLCTRIKDFEGAYNMLGNLKNFNLEPNSSMFN 482

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQ 180
            I+AGYFR+K+V  ALMV+K+M++A VKPDS TF YLI+NC+ E+ I KYYE++K AG Q
Sbjct: 483 CILAGYFREKNVSSALMVVKQMKEAGVKPDSITFGYLINNCTQEDAITKYYEEMKQAGVQ 542

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
            TK ++M+LI+AY   G+FEKA+QV++D ++P  +++E+KS L+SALAS G+ +DA+ +Y
Sbjct: 543 ATKRIYMSLIDAYAASGKFEKAKQVLVDPDVPAINQNELKSVLISALASRGKWADALHIY 602

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQ 300
           EE+++A C+++P+++I+LIE+ +S+GEL+ L+QL +++ D   W+DG  R+IL  VR K+
Sbjct: 603 EEMRKAECHVDPKSIISLIEYSDSKGELSTLVQLADDLQDDTSWIDGFFRMILFAVRNKK 662

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS 360
            S   DLLK+ K +     + +E HF E+F  IA T+P  V +G+DLL+F+KDELG  PS
Sbjct: 663 SSDIVDLLKRNKVRLLKKGIPVEAHFDEVFWAIAETEPSKVHLGMDLLRFMKDELGFVPS 722

Query: 361 RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420
           RKCLDFLL ACVNA+DL+   L+WKEY++A  P NVLS+L MY+  LA+G+ + A  L+S
Sbjct: 723 RKCLDFLLHACVNAKDLEHGLLVWKEYQSAAFPCNVLSFLRMYQVLLAAGDSEGAKALVS 782

Query: 421 KMPKDDPHVRFVIQACKQTYT 441
           K+PKDD  V+ +I+  +  ++
Sbjct: 783 KIPKDDKDVQHIIEESQSAFS 803


>gi|34849885|gb|AAQ82839.1| At4g04790 [Arabidopsis thaliana]
 gi|62320126|dbj|BAD94316.1| hypothetical protein [Arabidopsis thaliana]
          Length = 821

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 223/441 (50%), Positives = 332/441 (75%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           MH +L++ PSS SY+KL+ YSCD  +V  ALDVVE+M +  L+ S + ++S+LHA +E  
Sbjct: 363 MHEELDVMPSSTSYEKLVKYSCDSNEVVTALDVVEKMGEAGLMISADILHSLLHAIDEVL 422

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           EF+LVRRI+ ++C  ++KPN+E FRS+I L  +IKDF+ AY++L +LK  NL P +SM+N
Sbjct: 423 EFDLVRRIHSIMCTKSVKPNTENFRSIIRLCTRIKDFEGAYNMLGNLKNFNLEPNSSMFN 482

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQ 180
            I+AGYFR+K+V  ALMV+K+M++A VKPDS TF YLI+NC+ E+ I KYYE++K AG Q
Sbjct: 483 CILAGYFREKNVSSALMVVKQMKEAGVKPDSITFGYLINNCTQEDAITKYYEEMKQAGVQ 542

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
            TK ++M+LI+AY   G+FEKA+QV++D ++P  +++E+KS L+SALAS G+ +DA+ +Y
Sbjct: 543 ATKRIYMSLIDAYAASGKFEKAKQVLVDPDVPAINQNELKSVLISALASRGKWADALHIY 602

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQ 300
           EE+++A C+++P+++I+LIE+ +S+GEL+ L+QL +++ D   W+DG  R+IL  VR K+
Sbjct: 603 EEMRKAECHVDPKSIISLIEYSDSKGELSTLVQLADDLQDDTSWIDGFFRMILFAVRNKK 662

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS 360
            S   DLLK+ K +     + +E HF E+F  IA T+P  V +G+DLL+F+KDELG  PS
Sbjct: 663 SSDIVDLLKRNKVRLLKKGIPVEAHFDEVFWAIAETEPSKVHLGMDLLRFMKDELGFVPS 722

Query: 361 RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420
           RKCLDFLL ACVNA+DL+   L+WKEY++A  P NVLS+L MY+  LA+G+ + A  L+S
Sbjct: 723 RKCLDFLLHACVNAKDLEHGLLVWKEYQSAAFPCNVLSFLRMYQVLLAAGDSEGAKALVS 782

Query: 421 KMPKDDPHVRFVIQACKQTYT 441
           K+PKDD  V+ +I+  +  ++
Sbjct: 783 KIPKDDKDVQHIIEESQSAFS 803


>gi|297813863|ref|XP_002874815.1| hypothetical protein ARALYDRAFT_490115 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297320652|gb|EFH51074.1| hypothetical protein ARALYDRAFT_490115 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 821

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 221/441 (50%), Positives = 334/441 (75%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           MH +L++ PSS SY+KL+ YSCD  +V  AL++VE+M +  L+ S + ++S+LHA +E  
Sbjct: 363 MHEELDVMPSSTSYEKLVKYSCDSNEVVTALEIVEKMGEAGLIISADILHSLLHAIDEVL 422

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           EF+LVRRI+ ++C  ++KPN+E FRS+I L  +IKDF+ AY++L +LK  NL P +SM+N
Sbjct: 423 EFDLVRRIHSIMCTKSVKPNTENFRSIIRLCTRIKDFEGAYNMLGNLKNFNLEPNSSMFN 482

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQ 180
            I+AGYFR+K+V  ALMV+K+M++A VKPDS TF YLI+NC+ E+ I KYY+++K AG Q
Sbjct: 483 CILAGYFREKNVCRALMVVKQMKEAGVKPDSITFGYLINNCNREDAITKYYDEMKQAGVQ 542

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
            TK ++M+LI+AY   G+FEKA+QV++D ++P  +++E+KS L+SALAS G+ +DA+ +Y
Sbjct: 543 ATKRIYMSLIDAYAASGKFEKAKQVLVDPDVPAINQNELKSVLISALASRGKWADALHIY 602

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQ 300
           EE+++A C+++P+++I+LIE+ +S GEL+ L+QL +++ D   W+DG  R+IL  VR ++
Sbjct: 603 EEMRKAECHVDPKSIISLIEYSDSNGELSTLVQLADDLQDDTSWIDGFFRMILFAVRNRK 662

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS 360
             +  DLLKQ K +    ++ +E HF E+F  IA T+P  VQ+G+DLL+F+KDELG  PS
Sbjct: 663 SRNIVDLLKQNKIRLLKKDLPVETHFDEVFWAIAETEPTKVQLGMDLLRFMKDELGFVPS 722

Query: 361 RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420
           RKCLDFLL ACVNA+DL+   L+WKEY++A LP NVLS+L MY+  LA+G+ + A  L+S
Sbjct: 723 RKCLDFLLHACVNAKDLEHGLLVWKEYQSAALPCNVLSFLRMYQVLLAAGDSEGAKALVS 782

Query: 421 KMPKDDPHVRFVIQACKQTYT 441
           K+PKDD  V+ +I+  +  ++
Sbjct: 783 KIPKDDKDVQHIIEESQSAFS 803


>gi|334186792|ref|NP_193919.6| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635628|sp|O49711.2|PP335_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g21880, mitochondrial; Flags: Precursor
 gi|332659118|gb|AEE84518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 843

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 220/441 (49%), Positives = 325/441 (73%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           +H +L+I PSS SY+ L++Y C   +V  ALD+VE M +  LV S   ++S+L A E+  
Sbjct: 383 LHEELDIVPSSTSYENLVSYLCGSNEVVTALDIVENMCEAGLVISANILHSLLQAIEQIL 442

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           EFNLV+RIY ++ + ++KPNSETFR  I+L ++IKDF+ AY++L +LK  NL P +SMYN
Sbjct: 443 EFNLVQRIYSIMSNKSVKPNSETFRKSINLCIRIKDFEGAYNMLGNLKNFNLAPNSSMYN 502

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQ 180
           +IMAGYFR+K V  AL VLKEM++A+VKPDS TFSYLI+ C  E  I KYY+++K AG +
Sbjct: 503 SIMAGYFREKKVNSALKVLKEMKEADVKPDSVTFSYLINYCGEEATIAKYYKEMKQAGVE 562

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
           + K+V+M+L+ AY +CG+FEKA+QV++D E+P K  +E+KS L+SALAS+G  ++A+ +Y
Sbjct: 563 VNKHVYMSLVKAYASCGQFEKAKQVLMDLEVPAKDHNELKSVLISALASNGNITEALSIY 622

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQ 300
           EE+K+  C +EP+A+++LIE+ +S  EL  L++L  E+ D  +W+DG  ++I+  VR  +
Sbjct: 623 EEMKKLRCPVEPKAILSLIENSDSNAELGTLVELTHELRDSKFWIDGFFKIIVFAVRNNR 682

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS 360
            SS  DLL+Q K+    D++ +EY F E+F  IA T+  DV++GLDL+ F+K+EL L PS
Sbjct: 683 SSSILDLLEQTKNHLSKDDVGVEYWFEEVFKSIAETESSDVKVGLDLVSFMKEELELCPS 742

Query: 361 RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420
           RKCLDFLL ACVNA+D + A L+W+EY+ A LPYNV++YL MY+  +A+G+ KSA  ++S
Sbjct: 743 RKCLDFLLHACVNAKDKQSALLVWEEYQCAELPYNVINYLRMYQVLVAAGDSKSAEAIVS 802

Query: 421 KMPKDDPHVRFVIQACKQTYT 441
           K+P DD  V+ +I+  +  +T
Sbjct: 803 KIPNDDKDVKCIIKESRIVFT 823


>gi|357474805|ref|XP_003607688.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508743|gb|AES89885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1353

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 236/460 (51%), Positives = 326/460 (70%), Gaps = 6/460 (1%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           +H  LE+  SS++Y+KLI Y C + KV VALD+V++M Q     ST  + SIL  CEE+Y
Sbjct: 465 LHDVLEVLLSSSAYEKLILYCCGMHKVDVALDIVDKMCQAGFELSTHVLQSILQICEEAY 524

Query: 61  EFNLVRRIYPMI-CHHN-LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM 118
           ++ LV RI  +I CHH+ L+ N +  R ++   V++KDF+ AY ++++L E+   PT +M
Sbjct: 525 DYILVHRICSIIRCHHHYLQLNGDICRCLVHFCVRLKDFERAYKMVNELHELGFKPTTAM 584

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAG 178
           YNAIMAGYFR+K++ GAL VLK M++ANVKPDSQTFSYLI NC  ++DI  Y +++  + 
Sbjct: 585 YNAIMAGYFREKNISGALRVLKHMQEANVKPDSQTFSYLIGNCETKDDINMYRDEMTKSE 644

Query: 179 GQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAII 238
            ++TK ++MAL+NAY  CGEFE+A++VV D +   KS +E+KS LVSALASHGR S+A++
Sbjct: 645 IKLTKQIYMALVNAYAACGEFEEAKKVV-DDQSTSKSLNEIKSVLVSALASHGRLSEALV 703

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLN-SEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVR 297
           +Y+EIK+AG NLEP+AVI+LI+ +    GEL+RL+ LL ++ D +YW+DGC R+I +CV+
Sbjct: 704 IYKEIKKAGHNLEPKAVISLIDAMRYRSGELDRLLLLLMDLSDQNYWVDGCFRVIQYCVQ 763

Query: 298 FKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGL 357
              LS+  DLLKQLKD F+ DE   E  F   +  IA  +   +Q GLDLL  IKDELGL
Sbjct: 764 NNHLSTTVDLLKQLKDTFESDETMTEVLFDAAYSLIAGCESTRLQFGLDLLWAIKDELGL 823

Query: 358 PPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASK 417
            PSR+CLDFLL AC  + DL  A LIW+EYE AG PYNVLSYL MY+A LASG+ +SA  
Sbjct: 824 VPSRQCLDFLLRACAISGDLNNARLIWREYEVAGFPYNVLSYLRMYQALLASGDHRSADF 883

Query: 418 LLSKMPKDDPHVRFVIQACKQTY--TIPSLQKERGFEKDR 455
           +L K+P+DD  V  +I  C++TY   + S +  +  E D+
Sbjct: 884 ILKKIPRDDADVCSIILECQKTYGDNVKSGENVKSVEGDK 923


>gi|297803950|ref|XP_002869859.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315695|gb|EFH46118.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 880

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/482 (45%), Positives = 322/482 (66%), Gaps = 37/482 (7%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           +H +L++ PSS SY+ L++Y C   +V  ALD+VE M +  LV S   ++S+L A E+  
Sbjct: 321 LHEELDVVPSSTSYENLVSYLCGSNEVVTALDIVENMCEAGLVISANILHSLLQAVEQIL 380

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKD------------------------ 96
           EFNLV+RIY ++ + ++KPNSETFR  I+L ++IKD                        
Sbjct: 381 EFNLVQRIYSIMSNKSVKPNSETFRRSINLCIRIKDTLEIKYECAVSHRCNFSQPIGSVQ 440

Query: 97  FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSY 156
           F+ AY++L +LK  NL P +SMYN+IMAGYFR+K+V  AL VLKEM++A+VKPDS TFSY
Sbjct: 441 FEGAYTMLGNLKNFNLAPNSSMYNSIMAGYFREKNVNSALKVLKEMKEADVKPDSVTFSY 500

Query: 157 LIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSR 216
           LI+ C  E  I KYY+++K AG ++ K+V+M+LI AY +CG+ EKA+QV++D E+P K  
Sbjct: 501 LINYCGEEATIAKYYKEMKKAGVEVNKHVYMSLIKAYASCGQSEKAKQVLVDLEVPAKDH 560

Query: 217 SEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276
           +E+KS L+ ALAS+G   DA+ +YEE+K  GC +EP+A+I+LI++ +S  EL  L++L  
Sbjct: 561 NELKSVLIYALASNGNIIDALSIYEEMKNLGCPVEPKAIISLIDNSDSNAELRTLVELTH 620

Query: 277 EVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATT 336
           E+ D  +W+DG  ++I+  VR  + SS  DLL+Q K+    D++A+EY F E+F  IA T
Sbjct: 621 ELRDYKFWIDGFFKIIVFAVRNNRSSSILDLLEQTKNHLSKDDIAVEYWFEEVFKSIAET 680

Query: 337 DPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLP--- 393
           +  DV++GLDL+ F+K+EL L PSRKCLDFLL ACVNA+D + A L+WKEY+ A LP   
Sbjct: 681 ESNDVKLGLDLVSFMKEELELCPSRKCLDFLLHACVNAKDKQNALLVWKEYQFAELPRKL 740

Query: 394 -------YNVLSYLW---MYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQACKQTYTIP 443
                  YN    +W   MY+  +A+G+ KSA  L+SK+P DD  V+ +++   +   +P
Sbjct: 741 SSGERVMYNEFLVIWFHRMYQVLVAAGDSKSAEALVSKIPNDDKDVKCIVKESLKKPGMP 800

Query: 444 SL 445
            L
Sbjct: 801 IL 802


>gi|7267237|emb|CAB80844.1| hypothetical protein [Arabidopsis thaliana]
          Length = 731

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 206/441 (46%), Positives = 307/441 (69%), Gaps = 32/441 (7%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           MH +L++ PSS SY+KL+ YSCD  +V  ALDVVE+M +  L+ S + ++S+LHA +E  
Sbjct: 287 MHEELDVMPSSTSYEKLVKYSCDSNEVVTALDVVEKMGEAGLMISADILHSLLHAIDEVL 346

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           EF+L                                F+ AY++L +LK  NL P +SM+N
Sbjct: 347 EFDL--------------------------------FEGAYNMLGNLKNFNLEPNSSMFN 374

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQ 180
            I+AGYFR+K+V  ALMV+K+M++A VKPDS TF YLI+NC+ E+ I KYYE++K AG Q
Sbjct: 375 CILAGYFREKNVSSALMVVKQMKEAGVKPDSITFGYLINNCTQEDAITKYYEEMKQAGVQ 434

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
            TK ++M+LI+AY   G+FEKA+QV++D ++P  +++E+KS L+SALAS G+ +DA+ +Y
Sbjct: 435 ATKRIYMSLIDAYAASGKFEKAKQVLVDPDVPAINQNELKSVLISALASRGKWADALHIY 494

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQ 300
           EE+++A C+++P+++I+LIE+ +S+GEL+ L+QL +++ D   W+DG  R+IL  VR K+
Sbjct: 495 EEMRKAECHVDPKSIISLIEYSDSKGELSTLVQLADDLQDDTSWIDGFFRMILFAVRNKK 554

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS 360
            S   DLLK+ K +     + +E HF E+F  IA T+P  V +G+DLL+F+KDELG  PS
Sbjct: 555 SSDIVDLLKRNKVRLLKKGIPVEAHFDEVFWAIAETEPSKVHLGMDLLRFMKDELGFVPS 614

Query: 361 RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420
           RKCLDFLL ACVNA+DL+   L+WKEY++A  P NVLS+L MY+  LA+G+ + A  L+S
Sbjct: 615 RKCLDFLLHACVNAKDLEHGLLVWKEYQSAAFPCNVLSFLRMYQVLLAAGDSEGAKALVS 674

Query: 421 KMPKDDPHVRFVIQACKQTYT 441
           K+PKDD  V+ +I+  +  ++
Sbjct: 675 KIPKDDKDVQHIIEESQSAFS 695


>gi|357146787|ref|XP_003574111.1| PREDICTED: pentatricopeptide repeat-containing protein At4g04790,
           mitochondrial-like [Brachypodium distachyon]
          Length = 859

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/437 (48%), Positives = 302/437 (69%), Gaps = 4/437 (0%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K ++ PS  +Y K+I++ C+  K+ +ALDV + + +       E +N I+HACE+ YE +
Sbjct: 404 KFKLPPSVVAYDKIISFCCNSSKISLALDVADCICKYNPDVPIELLNPIIHACEQGYELH 463

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
           +V  +Y ++    LK   ETFRS+I++ VK+KDF  AY +L D +E     T S+YN IM
Sbjct: 464 MVWPLYDLMSRQKLKLRIETFRSLINICVKMKDFGGAYKILTDAEESGETSTVSLYNVIM 523

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK 183
            GYFR+KD +GA MV+++M+ A VK DS+TF+YLI NC +EE I KY ++++  G ++TK
Sbjct: 524 YGYFREKDHRGAQMVMEQMQNAGVKRDSETFNYLILNCDSEEKISKYIDEVRQDGIEMTK 583

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
             +MALI+ Y+  G F+ A+QVVLD EIP K   EVKSALV ALAS+G+ SD + +++EI
Sbjct: 584 QTYMALISTYSRFGNFDMAKQVVLDKEIPPKYLGEVKSALVGALASNGKVSDGLDMFDEI 643

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSS 303
           K++G  LEP+A IALIEH  +EG+L+RL QLLE++ +P  W DGC R++L+CV+     +
Sbjct: 644 KQSGGCLEPKAAIALIEHTQTEGKLDRLYQLLEDLSEPSSWFDGCSRVLLYCVQHNHPDA 703

Query: 304 ATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKC 363
           A DLLKQLK+K   +E +      ++FCQI   +P ++ +G+ LL  +K ELGL  SR  
Sbjct: 704 AVDLLKQLKEK---NETSTYMVVDQVFCQIWEMEPVNLDVGMTLLHAVK-ELGLNLSRTS 759

Query: 364 LDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMP 423
           LDFLL  CV A+D +RAH IW EYE++GLP+NVL+ L M +A  +SG R +A KLL K+P
Sbjct: 760 LDFLLSTCVKAKDSRRAHQIWTEYESSGLPHNVLTSLRMCQALFSSGQRTAAGKLLRKIP 819

Query: 424 KDDPHVRFVIQACKQTY 440
            +D HVR++I +CK TY
Sbjct: 820 IEDHHVRYIINSCKMTY 836


>gi|2894566|emb|CAA17155.1| putative protein [Arabidopsis thaliana]
 gi|7269033|emb|CAB79143.1| putative protein [Arabidopsis thaliana]
          Length = 859

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 205/431 (47%), Positives = 298/431 (69%), Gaps = 31/431 (7%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           +H +L+I PSS SY+ L++Y C   +V  ALD+VE M +  LV S   ++S+L A E+  
Sbjct: 335 LHEELDIVPSSTSYENLVSYLCGSNEVVTALDIVENMCEAGLVISANILHSLLQAIEQIL 394

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKD------------------------ 96
           EFNLV+RIY ++ + ++KPNSETFR  I+L ++IKD                        
Sbjct: 395 EFNLVQRIYSIMSNKSVKPNSETFRKSINLCIRIKDTLAMKYEYAVSHRTFCYPTITICY 454

Query: 97  -------FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
                  F+ AY++L +LK  NL P +SMYN+IMAGYFR+K V  AL VLKEM++A+VKP
Sbjct: 455 QPIGSVQFEGAYNMLGNLKNFNLAPNSSMYNSIMAGYFREKKVNSALKVLKEMKEADVKP 514

Query: 150 DSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA 209
           DS TFSYLI+ C  E  I KYY+++K AG ++ K+V+M+L+ AY +CG+FEKA+QV++D 
Sbjct: 515 DSVTFSYLINYCGEEATIAKYYKEMKQAGVEVNKHVYMSLVKAYASCGQFEKAKQVLMDL 574

Query: 210 EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN 269
           E+P K  +E+KS L+SALAS+G  ++A+ +YEE+K+  C +EP+A+++LIE+ +S  EL 
Sbjct: 575 EVPAKDHNELKSVLISALASNGNITEALSIYEEMKKLRCPVEPKAILSLIENSDSNAELG 634

Query: 270 RLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEI 329
            L++L  E+ D  +W+DG  ++I+  VR  + SS  DLL+Q K+    D++ +EY F E+
Sbjct: 635 TLVELTHELRDSKFWIDGFFKIIVFAVRNNRSSSILDLLEQTKNHLSKDDVGVEYWFEEV 694

Query: 330 FCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYEN 389
           F  IA T+  DV++GLDL+ F+K+EL L PSRKCLDFLL ACVNA+D + A L+W+EY+ 
Sbjct: 695 FKSIAETESSDVKVGLDLVSFMKEELELCPSRKCLDFLLHACVNAKDKQSALLVWEEYQC 754

Query: 390 AGLPYNVLSYL 400
           A LPYNV++YL
Sbjct: 755 AELPYNVINYL 765


>gi|255647400|gb|ACU24165.1| unknown [Glycine max]
          Length = 378

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/365 (59%), Positives = 271/365 (74%), Gaps = 1/365 (0%)

Query: 37  MVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKD 96
           M +     STE +  IL  CEESYE+ LV +IY +ICH++L+ N E  R ++   V++KD
Sbjct: 1   MCEAGFTLSTEVLQYILQICEESYEYVLVHQIYSIICHYHLELNGEICRCLVHFFVRMKD 60

Query: 97  FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSY 156
           F+ A+ ++ DL++MN  PT +MYNAIMAGYFR+K++ G L VLK+M  ANVKPDSQTFSY
Sbjct: 61  FEGAFRMIADLEDMNFKPTTNMYNAIMAGYFREKNISGVLRVLKKMRGANVKPDSQTFSY 120

Query: 157 LIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSR 216
           LI NC  EEDI+KY E++K +G Q TK +FMALIN+Y   G+ EKA QVVLD  IP KS 
Sbjct: 121 LIRNCEKEEDIMKYCEEIKQSGVQATKQIFMALINSYAASGKMEKAEQVVLDPIIPNKSL 180

Query: 217 SEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS-EGELNRLIQLL 275
           +E+KS LVSALASHG+ S+A++VYEEIK+AG NL P+AVI LIE L    GEL+ L+ LL
Sbjct: 181 NEIKSVLVSALASHGQLSEALLVYEEIKKAGHNLRPKAVITLIEELTKFNGELDGLLLLL 240

Query: 276 EEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIAT 335
           EE+ D DYW+DGC ++I++C+R K LSSA  L KQLKDKFK+DE+  E  F  +F  IA 
Sbjct: 241 EEISDLDYWVDGCFKVIMYCIRNKNLSSAIVLFKQLKDKFKNDEIVTEALFDAVFSLIAV 300

Query: 336 TDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYN 395
           ++   +QIGLDLL  IKDELGL  SR+CLDFLL AC NA DL  A LIW+EYE AG PYN
Sbjct: 301 SEFTHLQIGLDLLWAIKDELGLMASRQCLDFLLSACANAGDLNNARLIWREYEVAGFPYN 360

Query: 396 VLSYL 400
           VLSYL
Sbjct: 361 VLSYL 365


>gi|41052600|dbj|BAD07992.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|222622115|gb|EEE56247.1| hypothetical protein OsJ_05263 [Oryza sativa Japonica Group]
          Length = 889

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/445 (46%), Positives = 307/445 (68%), Gaps = 4/445 (0%)

Query: 2   HAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYE 61
           H + E+ PS ++ +K+I+  C   K+ +ALDV E + +       E  + I+ ACE+  E
Sbjct: 407 HEQFEVAPSISASEKIISVCCKSSKISLALDVAECLCKSNPDMPVELFHPIIQACEQGSE 466

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
           F+LV  IY ++  H +K  +ETFR+MI+L VK+KDF+ AY +L D +E   + T S+YNA
Sbjct: 467 FHLVHPIYDLMRRHKMKLKTETFRNMINLCVKMKDFEGAYRILTDAEESGDISTVSLYNA 526

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQI 181
           IM GYFR+K+  GA MV+ +M+ A VKPDS+T+ YLI NC  EE I +Y +QL+  G  +
Sbjct: 527 IMLGYFREKNHNGAQMVMAQMQIAGVKPDSETYCYLIFNCEFEEKISEYLDQLRQDGIHM 586

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
           +K+++M+L++AY   G F+ A+QV+ + EIP K  +E+KSAL+ ALAS+G+  D +I+Y+
Sbjct: 587 SKHIYMSLVSAYARLGNFDMAKQVLENKEIPPKYLNEIKSALIGALASNGKVLDGLIMYD 646

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQL 301
           EIK++GC+LEP++ IALIE+  ++GEL+RL QLLEE+ D + W DGC R++L+CV+    
Sbjct: 647 EIKQSGCHLEPKSAIALIENTQTKGELDRLYQLLEELGDSNMWFDGCSRVLLYCVQHNHP 706

Query: 302 SSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSR 361
           ++A  LLKQLK+K   DE++      ++F QI   DP ++  G+ +L  +K ELGL  SR
Sbjct: 707 NAAIGLLKQLKEK---DELSTYMVIDQVFSQIWDMDPVNLDFGMKILHAVK-ELGLNVSR 762

Query: 362 KCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSK 421
             LDFLL ACV A+D  RA LIW EYE+AGLP+NVL+ L MY+A L S  +K+  KLL K
Sbjct: 763 TSLDFLLSACVKAKDSNRAQLIWTEYESAGLPHNVLTSLRMYQALLLSQKKKATKKLLRK 822

Query: 422 MPKDDPHVRFVIQACKQTYTIPSLQ 446
           +PK+D HVR++I +C+  Y   +L+
Sbjct: 823 IPKEDVHVRYIIDSCQMAYCSQNLK 847


>gi|218189994|gb|EEC72421.1| hypothetical protein OsI_05736 [Oryza sativa Indica Group]
          Length = 841

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/445 (46%), Positives = 307/445 (68%), Gaps = 4/445 (0%)

Query: 2   HAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYE 61
           H + E+ PS ++ +K+I+  C   K+ +ALDV E + +       E  + I+ ACE+  E
Sbjct: 359 HEQFEVAPSISASEKIISVCCKSSKISLALDVAECLCKSNPDMPVELFHPIIQACEQGSE 418

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
           F+LV  IY ++  H +K  +ETFR+MI+L VK+KDF+ AY +L D +E   + T S+YNA
Sbjct: 419 FHLVHPIYDLMRRHKMKLKTETFRNMINLCVKMKDFEGAYRILTDAEESGDISTVSLYNA 478

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQI 181
           IM GYFR+K+  GA MV+ +M+ A VKPDS+T+ YLI NC  EE I +Y +QL+  G  +
Sbjct: 479 IMLGYFREKNHNGAQMVMAQMQIAGVKPDSETYCYLIFNCEFEEKISEYLDQLRQDGIHM 538

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
           +K+++M+L++AY   G F+ A+QV+ + EIP K  +E+KSAL+ ALAS+G+  D +I+Y+
Sbjct: 539 SKHIYMSLVSAYARLGNFDMAKQVLENKEIPPKYLNEIKSALIGALASNGKVLDGLIMYD 598

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQL 301
           EIK++GC+LEP++ IALIE+  ++GEL+RL QLLEE+ D + W DGC R++L+CV+    
Sbjct: 599 EIKQSGCHLEPKSAIALIENTQTKGELDRLYQLLEELGDSNMWFDGCSRVLLYCVQHNHP 658

Query: 302 SSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSR 361
           ++A  LLKQLK+K   DE++      ++F QI   DP ++  G+ +L  +K ELGL  SR
Sbjct: 659 NAAIGLLKQLKEK---DELSTYMVIDQVFSQIWDMDPVNLDFGMKILHAVK-ELGLNVSR 714

Query: 362 KCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSK 421
             LDFLL ACV A+D  RA LIW EYE+AGLP+NVL+ L MY+A L S  +K+  KLL K
Sbjct: 715 TSLDFLLSACVKAKDSNRAQLIWTEYESAGLPHNVLTSLRMYQALLLSQKKKATKKLLRK 774

Query: 422 MPKDDPHVRFVIQACKQTYTIPSLQ 446
           +PK+D HVR++I +C+  Y   +L+
Sbjct: 775 IPKEDVHVRYIIDSCQMAYCSQNLK 799


>gi|356514998|ref|XP_003526188.1| PREDICTED: pentatricopeptide repeat-containing protein At4g04790,
            mitochondrial-like [Glycine max]
          Length = 1117

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/348 (59%), Positives = 264/348 (75%)

Query: 97   FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSY 156
            F+ AY ++ DL++MN  PT +MYNAIMAGYFR+K+++G L VL +M  ANVKPDS TF Y
Sbjct: 764  FEGAYRMIADLEDMNFKPTTNMYNAIMAGYFREKNIRGGLRVLNQMRGANVKPDSHTFYY 823

Query: 157  LIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSR 216
            LI NC  EEDIIKY E++K +G   TK +FMALIN+Y   G+ EKA+QVVLD+ IP KS 
Sbjct: 824  LIQNCETEEDIIKYCEEMKQSGVHATKQIFMALINSYAASGKLEKAKQVVLDSNIPNKSL 883

Query: 217  SEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276
            +E+KS LVSALASHG+ S+A++VYEEIK+AG NLEP+AVI LIE     GEL+ L+ LLE
Sbjct: 884  NEIKSVLVSALASHGQLSEALLVYEEIKKAGHNLEPKAVITLIEFTKFNGELDGLLLLLE 943

Query: 277  EVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATT 336
            E++D DYW+DGC ++I++C+R K LSS   L KQLKDKFK+D++ ME  F  +F  IA++
Sbjct: 944  EMNDVDYWVDGCFKVIMYCIRNKNLSSTILLFKQLKDKFKNDDLVMEALFDAVFSLIASS 1003

Query: 337  DPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNV 396
            +   +QIGLDLL  IKDELGL PSR+CLDFLL AC NA DL  A LIW+EYE AG PYNV
Sbjct: 1004 ESSHLQIGLDLLWAIKDELGLMPSRQCLDFLLSACANAGDLNNARLIWREYEVAGFPYNV 1063

Query: 397  LSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQACKQTYTIPS 444
            LSYL MY+A LA+G+ +SA  +L K+P+DD  V  VI AC++T    S
Sbjct: 1064 LSYLRMYQALLAAGDDRSAHFMLKKIPQDDAEVCSVIIACQETVNTGS 1111



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 61/94 (64%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           MH  LE+ PS++SY+KLI + C L KV +ALD+VE+M +     STE +  IL  CEESY
Sbjct: 377 MHELLEVLPSTSSYEKLILHCCGLDKVGIALDIVEKMCEAGFTLSTEVLQCILQICEESY 436

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKI 94
           E+ LV RIY +IC ++L+ N E  R +    V +
Sbjct: 437 EYILVHRIYSIICRYHLELNGEICRRLCPTTVAV 470


>gi|356542213|ref|XP_003539564.1| PREDICTED: pentatricopeptide repeat-containing protein At4g04790,
           mitochondrial [Glycine max]
          Length = 755

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/378 (53%), Positives = 276/378 (73%), Gaps = 1/378 (0%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           +H +LE++PSS+SY+KLI +SC LLKVHVALD+V++M +  L  ST+ ++SIL  C+++ 
Sbjct: 374 LHQRLEVSPSSSSYEKLILHSCALLKVHVALDIVDEMCEAGLTLSTKVLHSILQICDDTS 433

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           E+NLV RI+  I  +NL+ N ETFRSMI L +K+KD + AY +LDDL ++NL P+  MYN
Sbjct: 434 EYNLVHRIFSTIHRYNLESNDETFRSMIDLFLKMKDIEGAYKMLDDLGKLNLKPSPGMYN 493

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQ 180
           AI+   FR+K++   + VL+ M+ A+VKPDSQTFSYLI N   EEDI+KYYE+LK +G  
Sbjct: 494 AILEECFREKNISDGVRVLEHMQCADVKPDSQTFSYLISNSETEEDIVKYYEELKQSGIV 553

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
            TK +FMAL+NAY  CG+ EKA++V+LD  IP KS +++K  LVS LASHG+ S+A+++Y
Sbjct: 554 ATKQIFMALVNAYAACGQLEKAKKVILDPLIPPKSLNQIKGFLVSVLASHGKLSEALVIY 613

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQ 300
           EEIK++G  LE + V +LIEH +SEGEL+RL+ LL+E+ D DYW D CCR+IL+C+  K 
Sbjct: 614 EEIKQSGHKLEAKEVTSLIEHTHSEGELDRLLLLLKELDDTDYWNDACCRIILYCIWNKH 673

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPD-VQIGLDLLQFIKDELGLPP 359
           LSSA +L   LKDKF+ DE  ME+ F ++F  I  ++    +    +LL  IKD+LGL P
Sbjct: 674 LSSAVELCNLLKDKFQSDEQVMEFLFDKVFSLIEESEESSHLHTCSELLSEIKDKLGLLP 733

Query: 360 SRKCLDFLLGACVNARDL 377
           S K  D LL AC NA DL
Sbjct: 734 SHKRHDSLLCACANATDL 751


>gi|4115946|gb|AAD03456.1| contains similarity to Ipomoea nil leaf protein (GB: D85101)
           [Arabidopsis thaliana]
          Length = 760

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/473 (41%), Positives = 296/473 (62%), Gaps = 67/473 (14%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           MH +L++ PSS SY+KL+ YSCD  +V  ALDVVE+M +  L+ S + ++S+LHA +E  
Sbjct: 287 MHEELDVMPSSTSYEKLVKYSCDSNEVVTALDVVEKMGEAGLMISADILHSLLHAIDEVL 346

Query: 61  EFNLVRRIYPMIC---HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTAS 117
           EF+L    Y M+    + NL+PNS  F  +++   + K+  SA                 
Sbjct: 347 EFDLFEGAYNMLGNLKNFNLEPNSSMFNCILAGYFREKNVSSA----------------- 389

Query: 118 MYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---------- 167
                             LMV+K+M++A VKPDS TF YLI+NC+ E+ I          
Sbjct: 390 ------------------LMVVKQMKEAGVKPDSITFGYLINNCTQEDAITKSCQVNATT 431

Query: 168 -------------------IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
                               KYYE++K AG Q TK ++M+LI+AY   G+FEKA+QV++D
Sbjct: 432 KYLYSLSLCIMSEKYVCAFFKYYEEMKQAGVQATKRIYMSLIDAYAASGKFEKAKQVLVD 491

Query: 209 AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGEL 268
            ++P  +++E+KS L+SALAS G+ +DA+ +YEE+++A C+++P+++I+LIE+ +S+GEL
Sbjct: 492 PDVPAINQNELKSVLISALASRGKWADALHIYEEMRKAECHVDPKSIISLIEYSDSKGEL 551

Query: 269 NRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSE 328
           + L+QL +++ D   W+DG  R+IL  VR K+ S   DLLK+ K +     + +E HF E
Sbjct: 552 STLVQLADDLQDDTSWIDGFFRMILFAVRNKKSSDIVDLLKRNKVRLLKKGIPVEAHFDE 611

Query: 329 IFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYE 388
           +F  IA T+P  V +G+DLL+F+KDELG  PSRKCLDFLL ACVNA+DL+   L+WKEY+
Sbjct: 612 VFWAIAETEPSKVHLGMDLLRFMKDELGFVPSRKCLDFLLHACVNAKDLEHGLLVWKEYQ 671

Query: 389 NAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQACKQTYT 441
           +A  P NVLS+L MY+  LA+G+ + A  L+SK+PKDD  V+ +I+  +  ++
Sbjct: 672 SAAFPCNVLSFLRMYQVLLAAGDSEGAKALVSKIPKDDKDVQHIIEESQSAFS 724


>gi|356545159|ref|XP_003541012.1| PREDICTED: pentatricopeptide repeat-containing protein At4g04790,
           mitochondrial-like [Glycine max]
          Length = 346

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/365 (55%), Positives = 250/365 (68%), Gaps = 33/365 (9%)

Query: 37  MVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKD 96
           M +     STE +  IL  CEESYE+ L                                
Sbjct: 1   MCEAGFTLSTEVLQYILQICEESYEYVL-------------------------------- 28

Query: 97  FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSY 156
           F+ A+ ++ DL++MN  PT +MYNAIMAGYFR+K++ G L VLK+M  ANVKPDSQT+SY
Sbjct: 29  FEGAFRMIADLEDMNFKPTTNMYNAIMAGYFREKNISGVLRVLKKMRGANVKPDSQTYSY 88

Query: 157 LIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSR 216
           LI NC  EEDI+KY E++K +G Q TK +FMALIN+Y   G+ EKA+QVVLD  IP KS 
Sbjct: 89  LIRNCEKEEDIMKYCEEIKQSGVQATKQIFMALINSYAASGKMEKAKQVVLDPIIPNKSL 148

Query: 217 SEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS-EGELNRLIQLL 275
           +E+KS LVSALASHG+ S+A++VYEEIK+AG NL P+AVI LIE L    GEL+ L+ LL
Sbjct: 149 NEIKSVLVSALASHGQLSEALLVYEEIKKAGHNLRPKAVITLIEELTKFNGELDGLLLLL 208

Query: 276 EEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIAT 335
           EE+ D DYW+DGC ++I++C+R K LSSA  L KQLKDKFK+DE+  E  F  +F  IA 
Sbjct: 209 EEISDLDYWVDGCFKVIMYCIRNKNLSSAIVLFKQLKDKFKNDEIVTEALFDAVFSLIAV 268

Query: 336 TDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYN 395
           ++   +QIGLDLL  IKDELGL  SR+CLDFLL AC NA DL  A LIW+EYE AG PYN
Sbjct: 269 SEFTHLQIGLDLLWAIKDELGLMASRQCLDFLLSACANAGDLNNARLIWREYEVAGFPYN 328

Query: 396 VLSYL 400
           VLSYL
Sbjct: 329 VLSYL 333


>gi|356546941|ref|XP_003541878.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21880,
           mitochondrial-like [Glycine max]
          Length = 705

 Score =  363 bits (933), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 196/377 (51%), Positives = 272/377 (72%), Gaps = 4/377 (1%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           +H +LE++PSS+SY+KLI +SC LL+VHVALD+V++M +  L  ST+ ++SIL  C+++ 
Sbjct: 328 LHQRLEVSPSSSSYEKLILHSCALLEVHVALDIVDEMCEAGLTLSTKALHSILQICDDTS 387

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           E+NLV RI+  I H+NL+ + ETFRSMI   +K+KD + AY +LDDL+E+NL  T  MYN
Sbjct: 388 EYNLVHRIFSTIRHYNLESDDETFRSMIDFFLKMKDIEGAYKMLDDLEELNLKLTPGMYN 447

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQ 180
           AIMA  F++K++   + VL+ M+ A+VKPDSQTFS LI N   +EDI KYYE+LK +G  
Sbjct: 448 AIMAECFQEKNISDGVRVLEHMQCADVKPDSQTFSCLISNSETKEDIAKYYEELKQSGIV 507

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
            TK +FMALINAY  CG+ EKA++V+LD  IP KS +++K  LVS LASHG+ S A+++Y
Sbjct: 508 ATKQIFMALINAYAACGQLEKAKKVILDPLIPPKSLNQIKGFLVSVLASHGQLSGALVIY 567

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQ 300
           ++IK++G  LE + + +LIEH +SEGEL+RL+ LLEE+ D DYW D CCR+IL+C+  K 
Sbjct: 568 DKIKQSGHKLEAKEITSLIEHTHSEGELDRLLLLLEELDDTDYWNDACCRIILYCIWNKH 627

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS 360
           LSSA +L   L DKF+ DE  ME+ F ++F  I   +   +   L+LL  IKD+LGL PS
Sbjct: 628 LSSAVELCNLLMDKFQSDEQVMEFLFDKVFSLIE--ESSHLHTFLELLSEIKDKLGLLPS 685

Query: 361 RKCLDFLLGACVNARDL 377
           +K  D LL   V A DL
Sbjct: 686 QKRHDSLLR--VTATDL 700


>gi|242063948|ref|XP_002453263.1| hypothetical protein SORBIDRAFT_04g002710 [Sorghum bicolor]
 gi|241933094|gb|EES06239.1| hypothetical protein SORBIDRAFT_04g002710 [Sorghum bicolor]
          Length = 898

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 193/436 (44%), Positives = 272/436 (62%), Gaps = 56/436 (12%)

Query: 2   HAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYE 61
           H K E+ PS A+Y K+I+  C+  K+ +ALDV ++M +       E+ + I+HACE+  E
Sbjct: 471 HEKFEVAPSIAAYDKIISICCNSSKIGLALDVADRMCKSSSDVPVESFHPIIHACEQRCE 530

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
            ++ R IY +I HHNLK  SETFRSMISL VK+KDF+ AY++L D +E   + T S+YNA
Sbjct: 531 LHMARPIYDLIRHHNLKLKSETFRSMISLFVKLKDFEGAYNILTDAEEFGEISTVSLYNA 590

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK------------ 169
           IM GY+R+K+  GA MV+ +M+ A VKPDS+TFSYLI NC +EE+I K            
Sbjct: 591 IMLGYYREKNYNGAQMVMSQMQIAGVKPDSETFSYLIANCESEENISKVSLSAATTQTTV 650

Query: 170 -------------------------YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204
                                    Y +QL+     +T+++++AL  AY   G F+ A+Q
Sbjct: 651 LPRIPCRLQPPPGHTASGPSIEFWTYRDQLRQDLIPMTRHIYVALTVAYARLGNFDMAKQ 710

Query: 205 VVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
           V+LD EIP K  S++KSALV ALAS+G+  DA+ +++ IKE+G +LEP+A I LIEH+ +
Sbjct: 711 VLLDKEIPRKFLSDIKSALVGALASNGQVLDALRLHDVIKESGGSLEPKAAITLIEHIRT 770

Query: 265 EGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEY 324
           EGEL+R+ QLL+ ++D D W +G                A DLLKQLK+K   DEM+   
Sbjct: 771 EGELDRMHQLLDGLNDSDSWFEGV---------------AIDLLKQLKEK---DEMSTYM 812

Query: 325 HFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIW 384
              ++FCQI   +  ++ +G+  L  +K ELGL  SR  LDFLL ACV A++L+RA  IW
Sbjct: 813 VVDQVFCQIWDMEITNLDLGMVFLDAVK-ELGLNVSRTSLDFLLSACVKAKNLQRAQQIW 871

Query: 385 KEYENAGLPYNVLSYL 400
            EYE+AGLP+NVL+ L
Sbjct: 872 SEYESAGLPHNVLTSL 887


>gi|449527586|ref|XP_004170791.1| PREDICTED: pentatricopeptide repeat-containing protein At4g04790,
           mitochondrial-like [Cucumis sativus]
          Length = 379

 Score =  347 bits (889), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 182/371 (49%), Positives = 245/371 (66%), Gaps = 38/371 (10%)

Query: 110 MNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK 169
           MN+    S+Y   M      K+     MVLK+ME A+VKPDS TFSYLI NC  EEDIIK
Sbjct: 7   MNMEVDVSIYCVTM------KNTSDGFMVLKQMELADVKPDSITFSYLISNCECEEDIIK 60

Query: 170 -------------------------------YYEQLKSAGGQITKYVFMALINAYTTCGE 198
                                          YY++L  +G Q TK+VFMALINAY   G+
Sbjct: 61  SNITEAFNILKAFQNGRENKTVDYRKIIPCLYYKELNHSGVQATKHVFMALINAYAAHGQ 120

Query: 199 FEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
           FEKA+QV+ D  IPVK+ +EV+  LVSALAS+G+T+DA+ +Y+E+K+AGC+L+ +AV +L
Sbjct: 121 FEKAKQVISDEGIPVKNLNEVRCVLVSALASNGQTADALKIYDEMKQAGCDLDCKAVSSL 180

Query: 259 IEHLNSEGELNRLIQLLEEVH-DPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKD 317
           IEH   +G LNR++QLL ++H D + W+  C R+IL  V+   LSS  DLLKQL  +  +
Sbjct: 181 IEHYPFDGPLNRMLQLLGDLHHDLNGWIHCCSRIILFSVKHNDLSSTVDLLKQLSYRCTN 240

Query: 318 DEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDL 377
           DE  M   F E+FC IA ++P  ++IGL LL+FIK++LGL P R+CLDFLLG C NA+D 
Sbjct: 241 DETIMGVTFDEVFCLIANSEPTYLEIGLQLLKFIKNDLGLSPPRRCLDFLLGTCANAKDA 300

Query: 378 KRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQACK 437
           + + LIWKEYENAGL YN +SYL MY+A LASG+ KSA  LL K+PKDD  V ++I+ C+
Sbjct: 301 ESSRLIWKEYENAGLLYNTISYLKMYQALLASGDSKSAKLLLGKIPKDDADVCYIIKECE 360

Query: 438 QTYTIPSLQKE 448
           + Y+  + +K+
Sbjct: 361 RVYSSTAKKKK 371


>gi|297720849|ref|NP_001172787.1| Os02g0132600 [Oryza sativa Japonica Group]
 gi|255670575|dbj|BAH91516.1| Os02g0132600 [Oryza sativa Japonica Group]
          Length = 385

 Score =  340 bits (872), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 165/334 (49%), Positives = 239/334 (71%), Gaps = 4/334 (1%)

Query: 113 MPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE 172
           + T S+YNAIM GYFR+K+  GA MV+ +M+ A VKPDS+T+ YLI NC  EE I +Y +
Sbjct: 14  ISTVSLYNAIMLGYFREKNHNGAQMVMAQMQIAGVKPDSETYCYLIFNCEFEEKISEYLD 73

Query: 173 QLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGR 232
           QL+  G  ++K+++M+L++AY   G F+ A+QV+ + EIP K  +E+KSAL+ ALAS+G+
Sbjct: 74  QLRQDGIHMSKHIYMSLVSAYARLGNFDMAKQVLENKEIPPKYLNEIKSALIGALASNGK 133

Query: 233 TSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLI 292
             D +I+Y+EIK++GC+LEP++ IALIE+  ++GEL+RL QLLEE+ D + W DGC R++
Sbjct: 134 VLDGLIMYDEIKQSGCHLEPKSAIALIENTQTKGELDRLYQLLEELGDSNMWFDGCSRVL 193

Query: 293 LHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIK 352
           L+CV+    ++A  LLKQLK+K   DE++      ++F QI   DP ++  G+ +L  +K
Sbjct: 194 LYCVQHNHPNAAIGLLKQLKEK---DELSTYMVIDQVFSQIWDMDPVNLDFGMKILHAVK 250

Query: 353 DELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNR 412
            ELGL  SR  LDFLL ACV A+D  RA LIW EYE+AGLP+NVL+ L MY+A L S  +
Sbjct: 251 -ELGLNVSRTSLDFLLSACVKAKDSNRAQLIWTEYESAGLPHNVLTSLRMYQALLLSQKK 309

Query: 413 KSASKLLSKMPKDDPHVRFVIQACKQTYTIPSLQ 446
           K+  KLL K+PK+D HVR++I +C+  Y   +L+
Sbjct: 310 KATKKLLRKIPKEDVHVRYIIDSCQMAYCSQNLK 343


>gi|388494604|gb|AFK35368.1| unknown [Lotus japonicus]
          Length = 285

 Score =  280 bits (717), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 143/256 (55%), Positives = 183/256 (71%), Gaps = 1/256 (0%)

Query: 187 MALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA 246
           MALINAY  CGEFEKA+QVVLD+E+P K   E+KS L+SALASH +  +A+++YEE+K+A
Sbjct: 1   MALINAYAACGEFEKAKQVVLDSEVPHKYLHEIKSVLISALASHKQLPEALLIYEEVKKA 60

Query: 247 GCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDP-DYWMDGCCRLILHCVRFKQLSSAT 305
           G  +EP+AVI+LIE L         + LL +     DYW+DGC R+I +CV+   LSSA 
Sbjct: 61  GLGVEPKAVISLIEELTQLSGELDGLLLLLKELSDLDYWVDGCFRVIKYCVQNNHLSSAI 120

Query: 306 DLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLD 365
            L KQLKDKF+ DE+ +E  F  +F  IA++    +Q GLDLL  IKDE+GL PSR+ LD
Sbjct: 121 VLFKQLKDKFESDEIQLEVLFDSVFSVIASSKSTHLQFGLDLLWAIKDEIGLIPSRQSLD 180

Query: 366 FLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKD 425
           FLL AC NA DL  A LIW+EYE AG PYNVLSYL MY+A LASG+ +SA+ +L K+PKD
Sbjct: 181 FLLSACANAGDLNNARLIWREYEVAGFPYNVLSYLRMYQALLASGDHRSANLMLKKIPKD 240

Query: 426 DPHVRFVIQACKQTYT 441
           D  V  VI +C+ TY+
Sbjct: 241 DMEVCSVILSCQNTYS 256


>gi|413935466|gb|AFW70017.1| hypothetical protein ZEAMMB73_194699 [Zea mays]
          Length = 283

 Score =  258 bits (658), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 133/260 (51%), Positives = 189/260 (72%), Gaps = 4/260 (1%)

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
           +T+ +++ALI AY   G F+ A+QV+LD EIP K  S++KSALV ALA +G+ SDA+ ++
Sbjct: 1   MTRNIYVALIVAYARLGNFDMAKQVLLDKEIPCKFLSDIKSALVGALALNGQVSDALRLH 60

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQ 300
           +EI ++G +LEP+A IALIEH+ +EGEL+R+ QLL+ ++D + W DGC R++L+CV+   
Sbjct: 61  DEIMQSGGSLEPKAAIALIEHIRTEGELDRMHQLLDGLNDSNSWFDGCGRVLLYCVQHNY 120

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS 360
             +A DLLKQ+++K   DEM+      ++FCQI   +  ++  G+  L  +K ELGL  S
Sbjct: 121 PDAAIDLLKQIREK---DEMSTYMVVDQVFCQIWDMETTNLDFGMVFLDAVK-ELGLNVS 176

Query: 361 RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420
           R  LDFLL ACV A+DL+RA  IW EYE+AGLP+NVLS L MY+AFL+SG RK+A KLL 
Sbjct: 177 RTSLDFLLSACVKAKDLRRAQQIWTEYESAGLPHNVLSSLRMYQAFLSSGGRKAAKKLLK 236

Query: 421 KMPKDDPHVRFVIQACKQTY 440
           K+ K+D HVR++  AC+ TY
Sbjct: 237 KIQKEDAHVRYITYACRATY 256


>gi|357480519|ref|XP_003610545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511600|gb|AES92742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 964

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 157/433 (36%), Positives = 231/433 (53%), Gaps = 68/433 (15%)

Query: 6   EITPSSASYKKLITYSCDLL-KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           EI P+S+ Y+KL+ Y    + KV VA+D+V+ M +  L  S+  + S+L  C E+ +   
Sbjct: 559 EILPASSMYEKLVLYYIATVDKVDVAIDLVDVMSEAGLTLSSHAMQSLLETCSETDQHFR 618

Query: 65  VRRIYPMICHH--NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           V  IY ++  H  + + N +    ++   V +KDF+ AY ++++L++       +MYNAI
Sbjct: 619 VFEIYSIMSRHPHHFELNGKICWLLVHCCVVMKDFECAYKMVNELQKKYFKYKTTMYNAI 678

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQIT 182
           MAGYF +K+  G L VLK+M  ANVK DS TFSYLI NC  +E+I KYYE+++ +G  +T
Sbjct: 679 MAGYFFEKNKIGGLEVLKQMRDANVKLDSYTFSYLIENCETKEEIKKYYEEMEQSGIHLT 738

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           K VF+ALI+AY  CGE+                                        YEE
Sbjct: 739 KEVFVALIHAYVPCGEY----------------------------------------YEE 758

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLS 302
                     R    ++ +L+ E E  R++ LL+E+   D W+DGC   I + V+ K LS
Sbjct: 759 ----------RDNKDVLWNLHGELE--RVLLLLKELSGQD-WVDGCRWAIRYSVQNKNLS 805

Query: 303 SATDLLKQLKDKFKDD--EMAMEYHFSE----------IFCQIATTDPPDVQIGLDLLQF 350
           S  +L KQLKD +K+D  E +   +F             F  +       +Q GLDLL  
Sbjct: 806 STIELFKQLKDYYKNDAPERSDPLYFGSKKLVFNVDEAYFLMLEIRSTTYLQFGLDLLDL 865

Query: 351 IKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASG 410
           IK ELGL PS+ CLD LL  C  + DL  A+L+W+E+ +A   Y   SYL MYK  LA+G
Sbjct: 866 IKKELGLVPSQTCLDVLLKLCALSEDLNNANLVWREFASAKCLYTTFSYLSMYKVLLAAG 925

Query: 411 NRKSASKLLSKMP 423
           + KSA  + +++P
Sbjct: 926 DHKSADIMANQIP 938



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 129/274 (47%), Gaps = 18/274 (6%)

Query: 138 VLKEME--QANVKPDSQTFSYLIHNCSNEEDI-IKYYEQLKSAGGQITKYVFMALINAYT 194
           ++++ME     +   S  +  L+  CS   D+ I + +++  AG  ++ +   +L+    
Sbjct: 139 IIRKMENLHGEILHASSMYEKLVLYCSATVDVAIDFVDEMSEAGFTLSSHAMQSLLE--- 195

Query: 195 TCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRA 254
           TC + ++  +V+    +  K   + K+ + +A+ + G   +    YEE++++G +L    
Sbjct: 196 TCSKTDQHFRVLYIFLLKAKKYFKYKTTMYNAIMA-GYFFE---YYEEMEQSGIHLTKEV 251

Query: 255 VIALI-------EHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDL 307
            +ALI       E+   +  L + +  L  +   D      C L L+C+   ++ +    
Sbjct: 252 FVALIHAYVPCGEYYEEQVYLCKYVVFLRFLFWSDLVKVITCFLPLNCLNNSRIITKMMH 311

Query: 308 LKQLKDKFKDDEMAMEYHFSE-IFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDF 366
            K++     +    + ++  E  F  + +     +Q  LDLL  IK ELGL PS+ CLD 
Sbjct: 312 PKEVILYISEVIKKLVFNVDEAYFLMLESGSTTYLQFELDLLDLIKKELGLVPSQTCLDV 371

Query: 367 LLGACVNARDLKRAHLIWKEYENAGLPYNVLSYL 400
           LL  C  + DL  A+L+W+EY +A   Y   SYL
Sbjct: 372 LLKLCALSEDLNNANLVWREYASAKCLYTTFSYL 405


>gi|357503341|ref|XP_003621959.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496974|gb|AES78177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 787

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 154/437 (35%), Positives = 225/437 (51%), Gaps = 85/437 (19%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           +H  L+I+P+ + Y+KLI Y C   KV VA++++++M +   +PS+  + S+L  C E+ 
Sbjct: 281 LHGLLKISPTFSLYEKLILYCCGKNKVDVAINIIDKMCEAYFMPSSHVMQSVLETCSETN 340

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           +   V +I  ++  H L            +N KI      Y L            ++ ++
Sbjct: 341 QDFQVDQISSILSRHRLHH--------FKINKKI------YWL------------SAHFS 374

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQ 180
            +M  Y+            +EMEQ+ +    + F                          
Sbjct: 375 VVMKDYY------------EEMEQSGINFAKEVF-------------------------- 396

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
                 +AL++AY    EFEKA+QVV D  IPVK   E+K  LVS+LASHG+ S+A+++ 
Sbjct: 397 ------VALLHAYAAYDEFEKAKQVVQDQRIPVKWLIEIKRMLVSSLASHGKLSEALVLL 450

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQ 300
           EEIK+AG  L PRAV+ L++ L S GEL R + L   +   D W+ GC  ++ + V++K 
Sbjct: 451 EEIKKAGQTLNPRAVLCLMDVLCSHGELERGLLLRTGLSGED-WVKGCEMVMQYSVQYKN 509

Query: 301 LSSATDLLKQLKDKFK-DDEMAMEYHF-----------SEIFCQIATTDPPDVQIGLDLL 348
           LSS  ++ KQLKD F+ DD      HF           +E F  I       +Q GLDLL
Sbjct: 510 LSSTIEMFKQLKDHFESDDAFKRGIHFEGSRTRMRRLCAEAFYLIFKHGSTHLQFGLDLL 569

Query: 349 QFIKDE-LGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFL 407
             IK E +GL PSR+CL++LL  C  +RDL +A+L+WKEY  AG PY    Y  MY A L
Sbjct: 570 DLIKKEVVGLVPSRQCLNYLLSVCAKSRDLNKANLVWKEYALAGYPYGEDCYWRMYHALL 629

Query: 408 ASGNRKSASKLL-SKMP 423
           ASG  KSA  LL +K+P
Sbjct: 630 ASGEHKSADSLLVNKIP 646


>gi|357503339|ref|XP_003621958.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496973|gb|AES78176.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 878

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 120/268 (44%), Positives = 164/268 (61%), Gaps = 15/268 (5%)

Query: 170 YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALAS 229
           YYE+++ +     K VF+AL++AY    EFEKA+QVV D  IPVK   E+K  LVS+LAS
Sbjct: 373 YYEEMEQSEINFAKEVFVALLHAYAAYDEFEKAKQVVQDQRIPVKWLIEIKRMLVSSLAS 432

Query: 230 HGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC 289
           HG+ S+A+++ EEIK+AG  L PRAV+ L++ L S GEL R + L   +   D W++GC 
Sbjct: 433 HGKLSEALVLLEEIKKAGQTLNPRAVLCLMDVLCSHGELERGLLLRTGLSGED-WVEGCE 491

Query: 290 RLILHCVRFKQLSSATDLLKQLKDKFKDDE------------MAMEYHFSEIFCQIATTD 337
            ++ + V++K LSS  ++ KQLKD F+ D+              M    +E F  I    
Sbjct: 492 MVMQYSVQYKNLSSTIEMFKQLKDHFESDDAFKRGILFGGSRTRMYRLCAEAFYLIFKHG 551

Query: 338 PPDVQIGLDLLQFIKDE-LGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNV 396
              +Q GLDLL  IK E +GL PS +CL++LL  C  +RDL +A+L+WKEY  AG PY  
Sbjct: 552 STHLQFGLDLLDLIKKEVVGLVPSSECLNYLLSVCAKSRDLNKANLVWKEYALAGYPYGE 611

Query: 397 LSYLWMYKAFLASGNRKSASKLL-SKMP 423
             Y  MY A LASG  KSA  LL +K+P
Sbjct: 612 DCYWRMYHALLASGEHKSADSLLVNKIP 639



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 137/297 (46%), Gaps = 36/297 (12%)

Query: 136 LMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINA 192
           L+ L + E   + P S+  +YL+  C+   D+ K    +++   AG    +  +  + +A
Sbjct: 561 LLDLIKKEVVGLVPSSECLNYLLSVCAKSRDLNKANLVWKEYALAGYPYGEDCYWRMYHA 620

Query: 193 YTTCGEFEKARQVVLDAEIPVKSRSEVKSALV-SALASHGRTSDAIIVYEEIKEAGCNLE 251
               GE + A  ++++ +IP  S S + S L  S   S+ + +D  +   E+        
Sbjct: 621 LLASGEHKSADSLLVN-KIP-SSYSGLSSDLKHSYRHSYVKKNDVPVFEFEL-------- 670

Query: 252 PRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVR--FKQLSSATDLLK 309
             A  +    +  E +   L+ L    +DP         LIL  +   F  LS       
Sbjct: 671 --ASYSWFAPMEMEADYIGLLLLASAGYDP---------LILQILHRLFLGLSFGN---- 715

Query: 310 QLKDKFKDDEMAMEYHF-SEIFCQIATTDPPDVQIGLDLLQFIKDEL-GLPPSRKCLDFL 367
             +  F   E  +  +  +  F  I       +Q GLDLL  IK E+ GL PSR+CL++L
Sbjct: 716 --RPGFDRPEPGLRKNLQASAFYLIFKHGSTHLQFGLDLLDLIKKEVVGLVPSRQCLNYL 773

Query: 368 LGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLL-SKMP 423
           L  C  +RDL +A+L+WKEY  AG PY    Y  MY A LASG  KSA  LL +K+P
Sbjct: 774 LSVCAASRDLNKANLVWKEYALAGYPYGEDCYWRMYHALLASGEHKSADSLLVNKIP 830



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 42/67 (62%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           +H  L+I+P+ + Y+KLI Y C   KV VA+++V++M +   +PS+  + S+L  C E+ 
Sbjct: 177 LHGLLKISPTFSLYEKLILYCCGKNKVDVAINIVDKMCEAYFMPSSHVMQSVLETCSETN 236

Query: 61  EFNLVRR 67
           +    RR
Sbjct: 237 QNFQTRR 243


>gi|224117408|ref|XP_002317567.1| predicted protein [Populus trichocarpa]
 gi|222860632|gb|EEE98179.1| predicted protein [Populus trichocarpa]
          Length = 248

 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 106/195 (54%), Positives = 144/195 (73%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           +E++PSS SY++LI YSC+ LKVH A+D+V+Q+ +     S  TI+S+L+A E S +FNL
Sbjct: 1   MEMSPSSTSYERLIVYSCNSLKVHHAIDMVDQLCEEGFTISINTIHSMLNASEASLDFNL 60

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
           V+RIY +I H +L P +ETFR MI L+VK+KDFD A  LL+DLK++NL PTA MYNAIM 
Sbjct: 61  VQRIYSLIYHLDLTPTNETFRRMIGLSVKMKDFDGAIGLLNDLKKLNLTPTAGMYNAIMD 120

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKY 184
           GYFR+K++ GALMVL++M+ A+VKPDS T+S LI NC NE+ I K YE++K AG Q++K 
Sbjct: 121 GYFREKNISGALMVLEQMKLADVKPDSATYSCLISNCDNEDQITKCYEEMKVAGIQVSKQ 180

Query: 185 VFMALINAYTTCGEF 199
               L +    C  F
Sbjct: 181 SKARLKSLDLLCARF 195


>gi|357485991|ref|XP_003613283.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514618|gb|AES96241.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1320

 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 127/356 (35%), Positives = 184/356 (51%), Gaps = 71/356 (19%)

Query: 52  ILHACEESYEFNLVR----RIYPMI-CH-HNLKPNSETFRSMISLNVKIKDFDSAYSLLD 105
           +++ C  S  F +++    +IY +I  H H  + N E  R ++   V  KDF+SAY +++
Sbjct: 141 LIYVCSFSIHFAILKIKYFKIYSIIRSHPHRFELNGEICRLLVHSCVVRKDFESAYKMVN 200

Query: 106 DLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE 165
           +L+E       +MYNAIMAGYF +K++ G L VLK+M  AN+K DS TFSYLI NC+ +E
Sbjct: 201 ELQEKYFKYKTTMYNAIMAGYFFEKNISGGLRVLKQMRDANIKLDSYTFSYLIGNCATKE 260

Query: 166 DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVS 225
           +I KYYE+++ +G  +TK VF++LI+AY  CGEF+  +Q VL                  
Sbjct: 261 EIKKYYEEMEQSGIHLTKEVFVSLIHAYAACGEFDAEKQDVL------------------ 302

Query: 226 ALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWM 285
                                 CNL               GEL R++ LL+E+   D W+
Sbjct: 303 ----------------------CNL--------------HGELERVLLLLKELSGQD-WV 325

Query: 286 DGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDE--------MAMEYH--FSEIFCQIAT 335
           DG    I + V+ K LSS   L KQLK+ +K+D         +  + H  F E +  I  
Sbjct: 326 DGFSWAIRYSVQNKNLSSTIQLFKQLKEYYKNDAFKRGDPFYLKRKGHDFFDEAYFLILK 385

Query: 336 TDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAG 391
                +Q G+DLL  IK ELGL PS+ CLD LL  C  +RDL    L++ +  +A 
Sbjct: 386 YGSTYLQFGMDLLDLIKKELGLVPSKMCLDGLLTLCAISRDLNNDMLLFFKLHDAS 441



 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 133/395 (33%), Positives = 184/395 (46%), Gaps = 106/395 (26%)

Query: 75  HNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK----- 129
           H+ + N E  R ++   V +KDF+ AY ++++L++       +MYNAIMA YF +     
Sbjct: 665 HHFELNGEICRLLVHWCVVMKDFECAYKMVNELQKKYYKYKTTMYNAIMARYFFEVPLLD 724

Query: 130 -KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMA 188
            K++ G L VLK+M  AN+K DS TFSYLI NC  +E+I KYYE+++ +G  +TK VF+A
Sbjct: 725 WKNIIGGLRVLKQMRDANIKLDSYTFSYLIGNCETKEEIKKYYEEMEQSGTHLTKEVFVA 784

Query: 189 LINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC 248
           LI+AY  C E                                         YEE ++  C
Sbjct: 785 LIHAYAACCE----------------------------------------DYEE-QDVLC 803

Query: 249 NLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLL 308
           NL               GEL  +I LL+E+   D W DG    I + ++ K LSS  +LL
Sbjct: 804 NL--------------HGELEMVILLLKELSGQD-WFDGFRWAIRYSIQNKNLSSTIELL 848

Query: 309 KQLK-------------DKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDEL 355
           KQLK               F      + Y   +I  +  +T    +Q GLDLL  IK E 
Sbjct: 849 KQLKVYYNNVASKRISGTSFTRRRRNVSYEAYDIISKFGST---YLQFGLDLLDLIKKE- 904

Query: 356 GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYL-W------------- 401
            L PS  CLD LL  C  +RDL  A+ +W+EY  A +P+  LSYL W             
Sbjct: 905 RLSPSMMCLDILLHLCAESRDLNNANFVWREYVFAKIPHGPLSYLRWASNLCTIFSLSYS 964

Query: 402 -------------MYKAFLASGNRKSASKLLSKMP 423
                        MY   LASG+ KSA  +L+ +P
Sbjct: 965 IFLLLMVLLYGCSMYHVLLASGDHKSADIILNNVP 999



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 10/106 (9%)

Query: 1    MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEES- 59
            +H  LEI P+S+ Y+KLI Y C   KV VA+DVV++M +     S+  + S+L  C E+ 
Sbjct: 1210 LHGVLEILPASSMYEKLILYCCGKDKVDVAIDVVDKMCEAGFTLSSHVMQSVLETCSETD 1269

Query: 60   YEFNL-------VRRIYPMICH--HNLKPNSETFRSMISLNVKIKD 96
             +F +       V  IY +I    H+ + N +  R ++   V  KD
Sbjct: 1270 QQFRVLYVLRKAVFEIYSIISRHPHHFELNGKICRLLVHFCVVFKD 1315


>gi|168018631|ref|XP_001761849.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686904|gb|EDQ73290.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 892

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 127/463 (27%), Positives = 231/463 (49%), Gaps = 50/463 (10%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSIL------HACEESYEFNLVRR 67
           +  LI   C    V   LD++++M Q     S    N  +         EE++E      
Sbjct: 405 FNILIDSCCKHGHVSWGLDLLDEMQQRGTKLSPYAFNPFICDFARWGMYEEAFEMKAA-- 462

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
               +    ++P+  T+ ++++  VK+ D + AY+LL ++K++ + P A  YN ++ G+ 
Sbjct: 463 ----MGRLGVQPSVVTYSTLVNCCVKLGDMEQAYNLLAEMKQVGIQPNAHCYNPLIMGFG 518

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS---NEEDIIKYYEQLKSAGGQITKY 184
            +  +  AL VL+EM  A V+PDS T+S LI  CS   NE+  ++ +E++   G Q    
Sbjct: 519 SQARLDRALEVLREMLSAGVQPDSYTYSMLIFACSMVRNEDKAVELFEEMLQRGVQPNAG 578

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEV-----KSALVSALASHGRTSDAIIV 239
           ++ A+ + +  CG+ E++ ++V +    ++ R EV     KSA+++ L+  GR  +A+ +
Sbjct: 579 IYSAMASVFARCGKLERSIEMVKE----IERRGEVVGTKAKSAILAGLSLAGRLGEALAL 634

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD------------G 287
           Y  +K  G   E  A   L+  +   G+L+R+  + E+    + W               
Sbjct: 635 YGALKREGAFPEAYAAGILLVAVGKAGDLDRMFNIFEDCRKENLWTKLTYQQRAEFLNVR 694

Query: 288 CCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPP-------D 340
           C  ++L C+R  QL  A + L+++KD+   D   +   F +IF  I+            D
Sbjct: 695 CINVVLGCIRHNQLGRALEFLRKVKDENIADVAVL---FDKIFLHISNGGRDANEMCWLD 751

Query: 341 VQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYL 400
           V  G  ++  ++ ELGL PSR  L+ LL  C +  D ++A  +  E E  GL  NV S +
Sbjct: 752 VDDGFAVVAAMR-ELGLSPSRMALEALLDGCASMNDSEQAQRVVSEMEKEGLALNVFSQI 810

Query: 401 WMYKAFLASGNRKSASKLLSKM-PKD--DPHVRFVIQACKQTY 440
            +++A++A+ + + A +LL ++ P D  D HV+F++Q   Q +
Sbjct: 811 RLFRAYVAAEDEEKAIELLQQIDPYDWQDVHVQFILQQTLQPH 853



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/168 (15%), Positives = 73/168 (43%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           ++ I P++  Y  LI       ++  AL+V+ +M+   + P + T + ++ AC      +
Sbjct: 500 QVGIQPNAHCYNPLIMGFGSQARLDRALEVLREMLSAGVQPDSYTYSMLIFACSMVRNED 559

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               ++  +    ++PN+  + +M S+  +    + +  ++ +++    +      +AI+
Sbjct: 560 KAVELFEEMLQRGVQPNAGIYSAMASVFARCGKLERSIEMVKEIERRGEVVGTKAKSAIL 619

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY 171
           AG      +  AL +   +++    P++     L+       D+ + +
Sbjct: 620 AGLSLAGRLGEALALYGALKREGAFPEAYAAGILLVAVGKAGDLDRMF 667


>gi|168052832|ref|XP_001778843.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669712|gb|EDQ56293.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 953

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 212/439 (48%), Gaps = 33/439 (7%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPM-- 71
           +  LI + C   K+   LD +++M    L  S+ + N  +    E   + ++   + M  
Sbjct: 465 FNILIDFCCKQGKISQGLDFLDEMQVRNLELSSFSFNPFIR---EFGRWTMIDEAFEMKA 521

Query: 72  -ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
            +    ++P   T+ S+IS  VKI D + A SL  ++KE+ +      YN ++ G+  + 
Sbjct: 522 AMLRLGVQPTVVTYNSLISACVKIGDLERACSLFPEMKELGVEANTHCYNPLIQGFAMQG 581

Query: 131 DVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFM 187
               AL V++ M+ A VKPD  T+  LI  CS  +D  K    + +++    +  + ++ 
Sbjct: 582 RFDRALAVMRSMDAAGVKPDVNTYRLLIFACSLSKDQDKADQLFAEMQEREIRPDESIYT 641

Query: 188 ALINAYTTCGEFEKARQVVLDAEIPVKSRS-EVKSALVSALASHGRTSDAIIVYEEIKEA 246
            +I  Y+ CG  ++  +++   E   ++   E KSA++  LA  GR  +A+ +Y   K  
Sbjct: 642 VMIIVYSKCGNVDRGIEMIRSLEKSGETAGIEAKSAILHGLAVTGRLEEALALYAVFKRE 701

Query: 247 GCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW--MD----------GCCRLILH 294
                  AV  L+  L   G+L+++ +L E+      W  M+           C   +L 
Sbjct: 702 RLLPHSYAVGTLLAALGKVGDLDKMFELFEDARGDGKWPFMNLRQRAEHLNIRCINSVLA 761

Query: 295 CVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPP-------DVQIGLDL 347
           C+R  QL  A   L+++K++   DE  +   F +IF  I+T           DV  G  +
Sbjct: 762 CIRHNQLGRAISFLRKVKEEGIADEGVL---FDKIFLHISTGGQDENEMRWLDVNDGFLV 818

Query: 348 LQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFL 407
           +  ++ ELGL PSR  L+ LL  C    D ++AH + +E E  GL  N+ S + +++A++
Sbjct: 819 INAMR-ELGLRPSRMSLEALLDGCAALNDSQQAHRVLQEMEREGLQLNIFSMIRVFRAYV 877

Query: 408 ASGNRKSASKLLSKMPKDD 426
           A  + + A  LL++MP++D
Sbjct: 878 AGEDEEKALDLLNQMPEED 896


>gi|449490006|ref|XP_004158482.1| PREDICTED: pentatricopeptide repeat-containing protein At4g04790,
           mitochondrial-like [Cucumis sativus]
          Length = 554

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 73/129 (56%), Positives = 99/129 (76%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           MH +L I PSSASY+KLI Y C L KVH+ALD+  +M   +  PST  ++SILHA +ES 
Sbjct: 408 MHFELVINPSSASYEKLICYCCGLFKVHMALDIANEMCDADFTPSTGVLHSILHALDESC 467

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           E+NLV ++Y +IC HNLKP+SE  R MI+L+VK+KDF  AY +L + ++MN++PT ++YN
Sbjct: 468 EYNLVHQVYSLICRHNLKPDSEILRGMINLHVKMKDFKGAYDMLKEWEKMNVIPTTNLYN 527

Query: 121 AIMAGYFRK 129
           AIMAGYFR+
Sbjct: 528 AIMAGYFRE 536


>gi|356577785|ref|XP_003557003.1| PREDICTED: uncharacterized protein LOC100788313 [Glycine max]
          Length = 289

 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/133 (54%), Positives = 97/133 (72%)

Query: 37  MVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKD 96
           M +     STE +  IL  CEESYE+ LV +IY +ICH++L+ N E  R ++   V++KD
Sbjct: 1   MCEAGFTLSTEVLQYILQICEESYEYVLVHQIYSIICHYHLELNGEICRCLVHFFVRMKD 60

Query: 97  FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSY 156
           F+ A+ ++ DL++MN  PT ++YNAIMAGYFR+K++ G L VLK+M  ANVKPDSQTFSY
Sbjct: 61  FEGAFRMIADLEDMNFKPTTNVYNAIMAGYFREKNISGVLRVLKKMRGANVKPDSQTFSY 120

Query: 157 LIHNCSNEEDIIK 169
           LI NC  EEDI+K
Sbjct: 121 LIRNCEKEEDIMK 133


>gi|357480521|ref|XP_003610546.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511601|gb|AES92743.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 92/232 (39%), Positives = 140/232 (60%), Gaps = 8/232 (3%)

Query: 6   EITPSSASYKKLITYSCDLL-KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           EI P+S+ Y+KL+ Y    + KV VA+D+V+ M +  L  S+  + S+L  C E+ +   
Sbjct: 559 EILPASSMYEKLVLYYIATVDKVDVAIDLVDVMSEAGLTLSSHAMQSLLETCSETDQHFR 618

Query: 65  VRRIYPMICHH--NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           V  IY ++  H  + + N +    ++   V +KDF+ AY ++++L++       +MYNAI
Sbjct: 619 VFEIYSIMSRHPHHFELNGKICWLLVHCCVVMKDFECAYKMVNELQKKYFKYKTTMYNAI 678

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQIT 182
           MAGYF +K+  G L VLK+M  ANVK DS TFSYLI NC  +E+I KYYE+++ +G  +T
Sbjct: 679 MAGYFFEKNKIGGLEVLKQMRDANVKLDSYTFSYLIENCETKEEIKKYYEEMEQSGIHLT 738

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALA---SHG 231
           K VF+ALI+AY  CGE+ + R  +    + +  R    S LV  +A   SHG
Sbjct: 739 KEVFVALIHAYVPCGEYYEERVCLFKYVVFL--RFLFWSDLVKVIACCKSHG 788



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 129/274 (47%), Gaps = 18/274 (6%)

Query: 138 VLKEME--QANVKPDSQTFSYLIHNCSNEEDI-IKYYEQLKSAGGQITKYVFMALINAYT 194
           ++++ME     +   S  +  L+  CS   D+ I + +++  AG  ++ +   +L+    
Sbjct: 139 IIRKMENLHGEILHASSMYEKLVLYCSATVDVAIDFVDEMSEAGFTLSSHAMQSLLE--- 195

Query: 195 TCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRA 254
           TC + ++  +V+    +  K   + K+ + +A+ + G   +    YEE++++G +L    
Sbjct: 196 TCSKTDQHFRVLYIFLLKAKKYFKYKTTMYNAIMA-GYFFE---YYEEMEQSGIHLTKEV 251

Query: 255 VIALI-------EHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDL 307
            +ALI       E+   +  L + +  L  +   D      C L L+C+   ++ +    
Sbjct: 252 FVALIHAYVPCGEYYEEQVYLCKYVVFLRFLFWSDLVKVITCFLPLNCLNNSRIITKMMH 311

Query: 308 LKQLKDKFKDDEMAMEYHFSE-IFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDF 366
            K++     +    + ++  E  F  + +     +Q  LDLL  IK ELGL PS+ CLD 
Sbjct: 312 PKEVILYISEVIKKLVFNVDEAYFLMLESGSTTYLQFELDLLDLIKKELGLVPSQTCLDV 371

Query: 367 LLGACVNARDLKRAHLIWKEYENAGLPYNVLSYL 400
           LL  C  + DL  A+L+W+EY +A   Y   SYL
Sbjct: 372 LLKLCALSEDLNNANLVWREYASAKCLYTTFSYL 405


>gi|302791539|ref|XP_002977536.1| hypothetical protein SELMODRAFT_417360 [Selaginella moellendorffii]
 gi|300154906|gb|EFJ21540.1| hypothetical protein SELMODRAFT_417360 [Selaginella moellendorffii]
          Length = 655

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/440 (24%), Positives = 206/440 (46%), Gaps = 22/440 (5%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M    ++TPSS +Y  LI  +C   ++  ALD++++M +  +   ++    ++ A     
Sbjct: 188 MARTFKVTPSSTTYSMLINLACRSSQIDQALDLIQEMHEKGVQLGSDVFQPLMIAFLHDS 247

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
               V  ++  +   N++P+ E +   +  + K  + +  +S L ++KE+ L  T+  YN
Sbjct: 248 HPEGVFELFAAMKRMNVQPSYEAYNYFLRASAKANNVEKMFSALREMKELRLPRTSETYN 307

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQ 180
           A++      +    AL VL +ME  +VKPDS T   LI    +    ++ +E+LK+ G +
Sbjct: 308 AVIQALGASRQYHRALTVLNDMENDSVKPDSGTMLELITCSPDSGKALEVFERLKTLGVK 367

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
            T  V+ +L ++    GE +KA +++ D E+  +     KS L+  LA   R  +A+  Y
Sbjct: 368 PTDSVYASLFSSLIRDGELDKALEMLKDPEVSFRIGINAKSTLLDGLAEEKRVDEALTCY 427

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEE-VHDPD------YWMDGCCRLIL 293
           ++I   G   +  +V +L+  L   G+L+R+ +L+++   DP       +  +   RL++
Sbjct: 428 DDILRDGKTPDLFSVGSLVRALGYAGKLDRMFELVDKHSMDPGSKKNDRFRKENKIRLLM 487

Query: 294 ----HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDL-- 347
                CV   +L      L+      K+ E      F  I   IA  +    +       
Sbjct: 488 VATKACVIHNELGHLETFLQ------KEQEFESSIIFDSIILDIANGEDKTCESAWSWKD 541

Query: 348 ---LQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYK 404
              L+ +  +L +P SR  L+ L+  CV  +D   A  I ++ E  GLP N  S + + +
Sbjct: 542 GFALRKVMLKLNIPQSRIFLEALMDGCVAVKDANYADEIVEQMEADGLPLNGFSLVRLLR 601

Query: 405 AFLASGNRKSASKLLSKMPK 424
            ++ +   + A+ +L +M +
Sbjct: 602 VYVVAEKVEKAASVLKRMKR 621


>gi|357474803|ref|XP_003607687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508742|gb|AES89884.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 567

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 56/108 (51%), Positives = 75/108 (69%), Gaps = 3/108 (2%)

Query: 97  FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSY 156
           F  AY ++++L++MNL PT +MYNAI+AGYF +K + G L V+K M+ ANV PDSQTF Y
Sbjct: 457 FVRAYMMVNELQKMNLEPTTAMYNAILAGYFHEKGLSGGLRVIKNMQDANVMPDSQTFRY 516

Query: 157 LIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204
           L+  C  E+DI KYYE+L  +G  I  Y +M+LI     C E EKA+Q
Sbjct: 517 LVGICETEDDINKYYEELMQSG--IRPY-YMSLIRDAAACWELEKAKQ 561


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 157/336 (46%), Gaps = 26/336 (7%)

Query: 1   MHAKL---EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACE 57
           MHA++    +TPS  +Y  LI   C    ++ A++ ++QM    L P+  T  +++    
Sbjct: 332 MHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFS 391

Query: 58  ESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTAS 117
           +    N   R+   +  +   P+  T+ ++I+ +      + A ++L+D+KE  L P   
Sbjct: 392 QKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVV 451

Query: 118 MYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQL 174
            Y+ +++G+ R  DV  AL V +EM +  +KPD+ T+S LI     +   ++    YE++
Sbjct: 452 SYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEM 511

Query: 175 KSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRT 233
              G    ++ + ALINAY   G+ EKA Q+  +  E  V       S L++ L    RT
Sbjct: 512 LRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRT 571

Query: 234 SDAI---------------IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            +A                + Y  + E   N+E ++V++LI+    +G +    Q+ E +
Sbjct: 572 REAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESM 631

Query: 279 HDPDYWMDGCCRLIL---HCVRFKQLSSATDLLKQL 311
              ++  DG    I+   HC R   +  A  L K++
Sbjct: 632 LGKNHKPDGTAYNIMIHGHC-RAGDIRKAYTLYKEM 666



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 134/295 (45%), Gaps = 27/295 (9%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
            +PS  +Y  LI   C   K+  A+ V+E M +  L P   + +++L     SY+ +   
Sbjct: 411 FSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEAL 470

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R+   +    +KP++ T+ S+I    + +    A  L +++  + L P    Y A++  Y
Sbjct: 471 RVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAY 530

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED-------IIK-YYEQLKSAG 178
             + D++ AL +  EM +  V PD  T+S LI+  + +         ++K +YE+  S  
Sbjct: 531 CMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEE--SVP 588

Query: 179 GQITKYVFM------------ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSA 226
             +T +  +            +LI  +   G   +A QV     +  K+     +A    
Sbjct: 589 SDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVF--ESMLGKNHKPDGTAYNIM 646

Query: 227 LASHGRTSD---AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           +  H R  D   A  +Y+E+ ++G  L    VIAL++ L+ EG++N L  ++  V
Sbjct: 647 IHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHV 701



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 76/403 (18%), Positives = 170/403 (42%), Gaps = 19/403 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEES-YEFNLVRRIYPMICHHNLKPNSETFRSMI 88
           AL +V        +P   + N++L A   S    +    ++  +    + PN  T+  +I
Sbjct: 153 ALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILI 212

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
                  + D A +L D ++    +P    YN ++ GY + + +     +L+ M    ++
Sbjct: 213 RGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLE 272

Query: 149 PDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           P+  +++ +I+    E   +++     ++   G  + +  +  LI  Y   G F +A  +
Sbjct: 273 PNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQA--L 330

Query: 206 VLDAEI---PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
           V+ AE+    +       ++L+ ++   G  + A+   ++++  G     R    L++  
Sbjct: 331 VMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGF 390

Query: 263 NSEGELNRLIQLLEEVHDPDYWMDGCCRLIL---HCVRFKQLSSATDLLKQLKDKFKDDE 319
           + +G +N   ++L E++D  +         L   HCV  K +  A  +L+ +K+K    +
Sbjct: 391 SQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGK-MEDAIAVLEDMKEKGLSPD 449

Query: 320 MAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKR 379
           +         FC+    D   +++  +++     E G+ P       L+      R  K 
Sbjct: 450 VVSYSTVLSGFCRSYDVDEA-LRVKREMV-----EKGIKPDTITYSSLIQGFCEQRRTKE 503

Query: 380 AHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           A  +++E    GLP +  +Y  +  A+   G+ + A +L ++M
Sbjct: 504 ACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEM 546



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/254 (21%), Positives = 117/254 (46%), Gaps = 6/254 (2%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +++P+  +Y  LI   C    + VAL + ++M     +P+  T N+++    +  + +  
Sbjct: 200 QVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDG 259

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            ++   +    L+PN  ++  +I+   +         +L ++           YN ++ G
Sbjct: 260 FKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKG 319

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQIT 182
           Y ++ +   AL++  EM +  + P   T++ LIH+     N    +++ +Q++  G    
Sbjct: 320 YCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPN 379

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYE 241
           +  +  L++ ++  G   +A +V+ +      S S V  +AL++     G+  DAI V E
Sbjct: 380 ERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLE 439

Query: 242 EIKEAGCNLEPRAV 255
           ++KE G  L P  V
Sbjct: 440 DMKEKG--LSPDVV 451


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 178/403 (44%), Gaps = 24/403 (5%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A  + EQMVQ  + P   T  S+L+AC ++   +  R +Y +I       +     ++I+
Sbjct: 195 AFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALIN 254

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +++K  D   A  + D+L   +L+   SM    + G  R    + A  + + ME+  V+P
Sbjct: 255 MHIKCGDIGDATKVFDNLPTRDLVTWTSM----ITGLARHGRFKQACNLFQRMEEEGVQP 310

Query: 150 DSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D   F  L+  C++ E +    K + ++K  G     YV  A+++ YT CG  E A +V 
Sbjct: 311 DKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEV- 369

Query: 207 LDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV--IALIEHLN 263
            D    VK R+ V  +A+++  A HGR  +A + + ++ E+G  +EP  V  ++++   +
Sbjct: 370 FDL---VKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESG--IEPNRVTFMSILGACS 424

Query: 264 SEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAME 323
           S   L R  Q+ + + +  Y  D   R  L  + + +  S  D  +  +   K + +A  
Sbjct: 425 SPSALKRGQQIQDHIIEAGYGSDDRVRTALLSM-YAKCGSLKDAHRVFEKISKQNVVAWN 483

Query: 324 YHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLI 383
              +      A          L   Q +  E G+ P+      +L  C ++  L+    +
Sbjct: 484 AMIT------AYVQHEQYDNALATFQALLKE-GIKPNSSTFTSILNVCKSSDSLELGKWV 536

Query: 384 WKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDD 426
                 AGL  ++     +   F+  G+  SA  L + MPK D
Sbjct: 537 HFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRD 579



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 114/221 (51%), Gaps = 10/221 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL   + +++  + P++ T  SIL+ C+ S    L + ++ +I    L+ +     +++S
Sbjct: 498 ALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVS 557

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           + V   D  SA +L +D+ + +L+     +N I+AG+ +    Q A    K M+++ +KP
Sbjct: 558 MFVNCGDLMSAKNLFNDMPKRDLVS----WNTIIAGFVQHGKNQVAFDYFKMMQESGIKP 613

Query: 150 DSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D  TF+ L++ C++ E +    + +  +  A       V   LI+ YT CG  E A QV 
Sbjct: 614 DKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVF 673

Query: 207 LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
              ++P K+     S +++  A HGR  +A+ ++ ++++ G
Sbjct: 674 --HKLPKKNVYSWTS-MITGYAQHGRGKEALELFYQMQQEG 711



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 90/404 (22%), Positives = 178/404 (44%), Gaps = 26/404 (6%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+ V+E++    +    +T +++L  C +        RIY  I    ++P+   + ++I+
Sbjct: 94  AMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLIN 153

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K  +  SA  + DD++E ++      +N ++ GY +    + A  + ++M Q +VKP
Sbjct: 154 MYAKCGNTISAKQIFDDMREKDVYS----WNLLLGGYVQHGLYEEAFKLHEQMVQDSVKP 209

Query: 150 DSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D +TF  +++ C++  ++ K    Y  +  AG     +V  ALIN +  CG+   A +V 
Sbjct: 210 DKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVF 269

Query: 207 LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
               +P +      S +++ LA HGR   A  +++ ++E G   +  A ++L+   N   
Sbjct: 270 --DNLPTRDLVTWTS-MITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPE 326

Query: 267 ELNRLIQL---LEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAME 323
            L +  ++   ++EV        G   L ++  +   +  A ++   +K +      AM 
Sbjct: 327 ALEQGKKVHARMKEVGWDTEIYVGTAILSMY-TKCGSMEDALEVFDLVKGRNVVSWTAMI 385

Query: 324 YHFSEIFCQIATTDPPDVQIGLDLLQFIK-DELGLPPSRKCLDFLLGACVNARDLKRAHL 382
             F++             +I    L F K  E G+ P+R     +LGAC +   LKR   
Sbjct: 386 AGFAQ-----------HGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQ 434

Query: 383 IWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDD 426
           I      AG   +      +   +   G+ K A ++  K+ K +
Sbjct: 435 IQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQN 478



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/238 (19%), Positives = 107/238 (44%), Gaps = 10/238 (4%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +I       ++  A     +M++  + P+  T  SIL AC         ++I   I
Sbjct: 380 SWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHI 439

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
                  +     +++S+  K      A+ + + + + N++     +NA++  Y + +  
Sbjct: 440 IEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVA----WNAMITAYVQHEQY 495

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNC--SNEEDIIKYYEQL-KSAGGQITKYVFMAL 189
             AL   + + +  +KP+S TF+ +++ C  S+  ++ K+   L   AG +   +V  AL
Sbjct: 496 DNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNAL 555

Query: 190 INAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           ++ +  CG+   A+ +  D  +P +      + +++    HG+   A   ++ ++E+G
Sbjct: 556 VSMFVNCGDLMSAKNLFND--MPKRDLVSWNT-IIAGFVQHGKNQVAFDYFKMMQESG 610



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/221 (21%), Positives = 93/221 (42%), Gaps = 9/221 (4%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +I       K  VA D  + M +  + P   T   +L+AC         RR++ +I
Sbjct: 582 SWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALI 641

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
                  +      +IS+  K    + A+ +   L + N+    SM    + GY +    
Sbjct: 642 TEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSM----ITGYAQHGRG 697

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMAL 189
           + AL +  +M+Q  VKPD  TF   +  C++    E+ + +++ +K    +     +  +
Sbjct: 698 KEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEHYGCM 757

Query: 190 INAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASH 230
           ++ +   G   +A + ++  ++   SR  V  AL+ A   H
Sbjct: 758 VDLFGRAGLLNEAVEFIIKMQVEPDSR--VWGALLGACQVH 796



 Score = 45.1 bits (105), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 68/144 (47%), Gaps = 8/144 (5%)

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKS 176
           NA++    +      A+ VL+ ++ ++++   QT+S L+  C    N  D  + Y  +K 
Sbjct: 79  NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKK 138

Query: 177 AGGQITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSD 235
           +G Q   +++  LIN Y  CG    A+Q+  D  E  V S     + L+     HG   +
Sbjct: 139 SGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSW----NLLLGGYVQHGLYEE 194

Query: 236 AIIVYEEIKEAGCNLEPRAVIALI 259
           A  ++E++ +     + R  ++++
Sbjct: 195 AFKLHEQMVQDSVKPDKRTFVSML 218


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 178/403 (44%), Gaps = 24/403 (5%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A  + EQMVQ  + P   T  S+L+AC ++   +  R +Y +I       +     ++I+
Sbjct: 195 AFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALIN 254

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +++K  D   A  + D+L   +L+   SM    + G  R    + A  + + ME+  V+P
Sbjct: 255 MHIKCGDIGDATKVFDNLPTRDLVTWTSM----ITGLARHGRFKQACNLFQRMEEEGVQP 310

Query: 150 DSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D   F  L+  C++ E +    K + ++K  G     YV  A+++ YT CG  E A +V 
Sbjct: 311 DKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEV- 369

Query: 207 LDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV--IALIEHLN 263
            D    VK R+ V  +A+++  A HGR  +A + + ++ E+G  +EP  V  ++++   +
Sbjct: 370 FDL---VKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESG--IEPNRVTFMSILGACS 424

Query: 264 SEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAME 323
           S   L R  Q+ + + +  Y  D   R  L  + + +  S  D  +  +   K + +A  
Sbjct: 425 SPSALKRGQQIQDHIIEAGYGSDDRVRTALLSM-YAKCGSLKDAHRVFEKISKQNVVAWN 483

Query: 324 YHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLI 383
              +      A          L   Q +  E G+ P+      +L  C ++  L+    +
Sbjct: 484 AMIT------AYVQHEQYDNALATFQALLKE-GIKPNSSTFTSILNVCKSSDSLELGKWV 536

Query: 384 WKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDD 426
                 AGL  ++     +   F+  G+  SA  L + MPK D
Sbjct: 537 HFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRD 579



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 114/221 (51%), Gaps = 10/221 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL   + +++  + P++ T  SIL+ C+ S    L + ++ +I    L+ +     +++S
Sbjct: 498 ALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVS 557

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           + V   D  SA +L +D+ + +L+     +N I+AG+ +    Q A    K M+++ +KP
Sbjct: 558 MFVNCGDLMSAKNLFNDMPKRDLVS----WNTIIAGFVQHGKNQVAFDYFKMMQESGIKP 613

Query: 150 DSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D  TF+ L++ C++ E +    + +  +  A       V   LI+ YT CG  E A QV 
Sbjct: 614 DKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVF 673

Query: 207 LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
              ++P K+     S +++  A HGR  +A+ ++ ++++ G
Sbjct: 674 --HKLPKKNVYSWTS-MIAGYAQHGRGKEALELFYQMQQEG 711



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 90/404 (22%), Positives = 177/404 (43%), Gaps = 26/404 (6%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+ V+E++    +    +T +++L  C +        RIY  I    ++P+     ++I+
Sbjct: 94  AMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLIN 153

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K  +  SA  + DD++E ++      +N ++ GY +    + A  + ++M Q +VKP
Sbjct: 154 MYAKCGNTISAKQIFDDMREKDVYS----WNLLLGGYVQHGLYEEAFKLHEQMVQDSVKP 209

Query: 150 DSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D +TF  +++ C++  ++ K    Y  +  AG     +V  ALIN +  CG+   A +V 
Sbjct: 210 DKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVF 269

Query: 207 LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
               +P +      S +++ LA HGR   A  +++ ++E G   +  A ++L+   N   
Sbjct: 270 --DNLPTRDLVTWTS-MITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPE 326

Query: 267 ELNRLIQL---LEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAME 323
            L +  ++   ++EV        G   L ++  +   +  A ++   +K +      AM 
Sbjct: 327 ALEQGKKVHARMKEVGWDTEIYVGTAILSMY-TKCGSMEDALEVFDLVKGRNVVSWTAMI 385

Query: 324 YHFSEIFCQIATTDPPDVQIGLDLLQFIK-DELGLPPSRKCLDFLLGACVNARDLKRAHL 382
             F++             +I    L F K  E G+ P+R     +LGAC +   LKR   
Sbjct: 386 AGFAQ-----------HGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQ 434

Query: 383 IWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDD 426
           I      AG   +      +   +   G+ K A ++  K+ K +
Sbjct: 435 IQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQN 478



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/238 (19%), Positives = 107/238 (44%), Gaps = 10/238 (4%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +I       ++  A     +M++  + P+  T  SIL AC         ++I   I
Sbjct: 380 SWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHI 439

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
                  +     +++S+  K      A+ + + + + N++     +NA++  Y + +  
Sbjct: 440 IEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVA----WNAMITAYVQHEQY 495

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNC--SNEEDIIKYYEQL-KSAGGQITKYVFMAL 189
             AL   + + +  +KP+S TF+ +++ C  S+  ++ K+   L   AG +   +V  AL
Sbjct: 496 DNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNAL 555

Query: 190 INAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           ++ +  CG+   A+ +  D  +P +      + +++    HG+   A   ++ ++E+G
Sbjct: 556 VSMFVNCGDLMSAKNLFND--MPKRDLVSWNT-IIAGFVQHGKNQVAFDYFKMMQESG 610



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 94/221 (42%), Gaps = 9/221 (4%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +I       K  VA D  + M +  + P   T   +L+AC         RR++ +I
Sbjct: 582 SWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALI 641

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
                  +      +IS+  K    + A+ +   L + N+    SM    +AGY +    
Sbjct: 642 TEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSM----IAGYAQHGRG 697

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMAL 189
           + AL +  +M+Q  VKPD  TF   +  C++    E+ + +++ +K    +     +  +
Sbjct: 698 KEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEHYGCM 757

Query: 190 INAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASH 230
           ++ +   G   +A + ++  ++   SR  V  AL+ A   H
Sbjct: 758 VDLFGRAGLLNEAVEFIIKMQVEPDSR--VWGALLGACQVH 796



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 67/144 (46%), Gaps = 8/144 (5%)

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKS 176
           NA++    +      A+ VL+ ++ ++++   QT+S L+  C    N  D  + Y  +K 
Sbjct: 79  NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKK 138

Query: 177 AGGQITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSD 235
           +G Q   ++   LIN Y  CG    A+Q+  D  E  V S     + L+     HG   +
Sbjct: 139 SGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSW----NLLLGGYVQHGLYEE 194

Query: 236 AIIVYEEIKEAGCNLEPRAVIALI 259
           A  ++E++ +     + R  ++++
Sbjct: 195 AFKLHEQMVQDSVKPDKRTFVSML 218


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 133/295 (45%), Gaps = 40/295 (13%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P++ +Y +LI   C    VH A+ V+ +M++ +++P   T NS++     S  F+   
Sbjct: 424 LRPNTRTYNELIKGYCKR-NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAY 482

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R+  ++    L P+  T+ SMI    K K  + A  L D L++ +++P   MY A++ GY
Sbjct: 483 RLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGY 542

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSN---------EEDIIKY------ 170
            +   V  A ++L++M   N  P+S TF+ LIH  C++         EE ++K       
Sbjct: 543 CKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTV 602

Query: 171 ----------------------YEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
                                 ++Q+ S+G +   + +   I  Y   G  + A  +V  
Sbjct: 603 STDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAK 662

Query: 209 -AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
             E  V       S+L+      GRT+ A +V + + + GC       ++LI+HL
Sbjct: 663 MKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHL 717



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 129/281 (45%), Gaps = 21/281 (7%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHAC----EESYEFNLV 65
           +  +Y  LI   C   ++  A+D+  +M   +  P+  T   ++ A      +S   NLV
Sbjct: 287 NEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLV 346

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           + +        +KPN  T+  +I         + A  LL  + E  LMP    YNA++ G
Sbjct: 347 KEME----EKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALING 402

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI-----HNCSNEEDIIKYYEQLKSAGGQ 180
           Y ++  ++ AL V++ ME  N++P+++T++ LI      N      ++    + K     
Sbjct: 403 YCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRNVHKAMGVLNKMLERKVLPDV 462

Query: 181 ITKYVFMALINAYTTCGEFEKA-RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
           +T   + +LI+     G F+ A R + L  +  +       ++++ +L    R  +A  +
Sbjct: 463 VT---YNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDL 519

Query: 240 YEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEV 278
           ++ +++   ++ P  V+  ALI+     G++N    +LE++
Sbjct: 520 FDSLEQK--DVIPNVVMYTALIDGYCKAGKVNEAHLMLEKM 558



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 120/273 (43%), Gaps = 6/273 (2%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  LI   C   +   AL++V++M +  + P+  T   ++ +     +    R +
Sbjct: 321 PTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKAREL 380

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    L PN  T+ ++I+   K    + A  +++ ++  NL P    YN ++ GY  
Sbjct: 381 LGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYC- 439

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYV 185
           K++V  A+ VL +M +  V PD  T++ LI       N +   +    +   G     + 
Sbjct: 440 KRNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWT 499

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           + ++I++       E+A  +    E   V     + +AL+      G+ ++A ++ E++ 
Sbjct: 500 YTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKML 559

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEE 277
              C        ALI  L ++G+L     LLEE
Sbjct: 560 SKNCLPNSLTFNALIHGLCTDGKLKE-ATLLEE 591



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 102/235 (43%), Gaps = 12/235 (5%)

Query: 50  NSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKE 109
           N++L++       + ++++Y  +    + PN  T+  M++   K+ + + A   +  + E
Sbjct: 187 NTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVE 246

Query: 110 MNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI-- 167
             L P    Y +++ GY ++KD+  A  V KEM     + +   +++LIH    E  I  
Sbjct: 247 AGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDE 306

Query: 168 -IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEI---PVKSRSEVKSAL 223
            +  + ++K      T   +  LI A   CG   K+  + L  E+    +K      + L
Sbjct: 307 AMDLFVKMKDDDCYPTVRTYTVLIKAL--CGSERKSEALNLVKEMEEKGIKPNIHTYTVL 364

Query: 224 VSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLE 276
           + +L S  +   A  +  ++ E G  L P  +   ALI      G +   + ++E
Sbjct: 365 IDSLCSQCKLEKARELLGQMLEKG--LMPNVITYNALINGYCKRGMIEDALDVVE 417



 Score = 46.2 bits (108), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 3/156 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGE-LVPSTETINSILHACEESYEFNLV 65
           +TP++ SY+KL+   C++  + VA  V + M Q E + PS    N++L  C +  + N  
Sbjct: 756 VTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELVFNALLSCCCKLEKHNEA 815

Query: 66  RRIY-PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
            ++   MIC  +L P  E+ + +I    K  + +   S+  +L +         +  I+ 
Sbjct: 816 AKVVDDMICVGHL-PQLESCKILICRLYKKGEKERGTSVFQNLLQCGYYDDELAWKIIID 874

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160
           G  ++  V+    +   ME+      SQT+S LI  
Sbjct: 875 GVGKQGLVEAFYELFNVMEKNGCTFSSQTYSLLIEG 910



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 39/180 (21%), Positives = 75/180 (41%), Gaps = 27/180 (15%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEE----SYEFNL 64
           P + +Y   I   C   ++  A D+V +M +  + P   T +S++    +    +  F +
Sbjct: 635 PDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVV 694

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIK------------------DFDSAYSLLDD 106
           ++R++   C    +P+  TF S+I   +++K                  +FD    LL+ 
Sbjct: 695 LKRMHDTGC----EPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMMEFDIVVELLEK 750

Query: 107 LKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA-NVKPDSQTFSYLIHNCSNEE 165
           + E  + P A  Y  +M G     +++ A  V   M+Q   + P    F+ L+  C   E
Sbjct: 751 MVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELVFNALLSCCCKLE 810


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 155/336 (46%), Gaps = 26/336 (7%)

Query: 1   MHAKL---EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACE 57
           MHA++    ++PS  +Y  LI   C    ++ A + ++QM    L P+  T  +++    
Sbjct: 332 MHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFS 391

Query: 58  ESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTAS 117
           +    N   R+   +  +   P+  T+ ++I+ +        A ++L+D+KE  L P   
Sbjct: 392 QKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVV 451

Query: 118 MYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQL 174
            Y+ +++G+ R  DV  AL V ++M    +KPD+ T+S LI     +   ++    ++++
Sbjct: 452 SYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEM 511

Query: 175 KSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRT 233
              G    ++ + ALINAY   G+ +KA Q+  +  E  V       S L++ L    RT
Sbjct: 512 LRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQART 571

Query: 234 SDAI---------------IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            +A                + Y  + E   N+E ++V++LI+    +G +    Q+ E +
Sbjct: 572 REAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESM 631

Query: 279 HDPDYWMDGCCRLIL---HCVRFKQLSSATDLLKQL 311
            + ++  DG    ++   HC R   +  A  L K++
Sbjct: 632 LEKNHKPDGTAYNVMIHGHC-RGGDIRKAYSLYKEM 666



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 133/294 (45%), Gaps = 25/294 (8%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
            +PS  +Y  LI   C   K+  A+ V+E M +  L P   + +++L     SY+ +   
Sbjct: 411 FSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEAL 470

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R+   +    +KP++ T+ S+I    + +    A  L D++  + L P    Y A++  Y
Sbjct: 471 RVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAY 530

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN----------------EEDI--- 167
             + D+Q A+ +  EM +  V PD  T+S LI+  +                 EE +   
Sbjct: 531 CMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSD 590

Query: 168 IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSAL 227
           + Y+  +++      K V ++LI  +   G   +A QV     +  K+     +A    +
Sbjct: 591 VTYHTLIENCSNIEFKSV-VSLIKGFCMKGMMTEADQVF--ESMLEKNHKPDGTAYNVMI 647

Query: 228 ASHGRTSD---AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
             H R  D   A  +Y+E+ ++G  L    VIAL++ L+ EG++N L  ++  V
Sbjct: 648 HGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIALVKTLHKEGKVNELNSVIANV 701



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 77/403 (19%), Positives = 166/403 (41%), Gaps = 19/403 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEES-YEFNLVRRIYPMICHHNLKPNSETFRSMI 88
           AL +V        +P   + N++L A   S    +    ++  +    + PN  T+  +I
Sbjct: 153 ALSIVHLSQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILI 212

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
                  + D A    D +++   +P    YN ++ GY + + +     +L+ M    ++
Sbjct: 213 RGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLE 272

Query: 149 PDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           P+  +++ +I+    E   ++I     ++   G  + +  +  LI  Y   G F +A  +
Sbjct: 273 PNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQA--L 330

Query: 206 VLDAEIPVKSRSE---VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
           V+ AE+     S      ++L+ ++   G  + A    ++++  G     R    L++  
Sbjct: 331 VMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGF 390

Query: 263 NSEGELNRLIQLLEEVHDPDYWMDGCCRLIL---HCVRFKQLSSATDLLKQLKDKFKDDE 319
           + +G +N   ++L+E+ D  +         L   HC+  K +  A  +L+ +K+K    +
Sbjct: 391 SQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMV-DAIAVLEDMKEKGLTPD 449

Query: 320 MAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKR 379
           +         FC+       DV   L + + +  + G+ P       L+      R  K 
Sbjct: 450 VVSYSTVLSGFCR-----SYDVDEALRVKRKMVAK-GIKPDTITYSSLIQGFCEQRRTKE 503

Query: 380 AHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           A  ++ E    GLP +  +Y  +  A+   G+ + A +L ++M
Sbjct: 504 ACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEM 546


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 104/461 (22%), Positives = 176/461 (38%), Gaps = 84/461 (18%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K +  P+  +Y  LI   C   K++ AL++ + M +  L P+  T+N ++    ++ +  
Sbjct: 397 KRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLE 456

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               I+  +      PN+ TF S+I    K    D AYSL + + +   +P A +Y +++
Sbjct: 457 EACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLI 516

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK 183
             +F+    +    + KEM      PD                                 
Sbjct: 517 RSFFKCGRKEDGHKIYKEMVHTGCSPD--------------------------------- 543

Query: 184 YVFMALINAYTTC----GEFEKARQVVLDAE----IPVKSRSEVKSALVSALASHGRTSD 235
              + LIN Y  C    GE EK R +  +      IP  +RS   S L+  L   G  ++
Sbjct: 544 ---LTLINTYMDCVFKAGETEKGRALFREINAHGFIP-DARS--YSILIHGLVKAGLANE 597

Query: 236 AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV----HDPDYWMDGCCRL 291
              ++  +KE GC L+  A  A+I+     G++N+  QLLEE+    H P     G   +
Sbjct: 598 TYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYG--SV 655

Query: 292 ILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTD-------------- 337
           I    +  +L  A  L ++ K       + +     + F ++   D              
Sbjct: 656 IDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGL 715

Query: 338 PPDVQI----------------GLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAH 381
            P+V                   L   Q +KD L  PP++     L+      R   +A 
Sbjct: 716 TPNVYTWNCLLDALVKAEEINEALICFQSMKD-LKCPPNQITYSILINGLCRVRKFNKAF 774

Query: 382 LIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           + W+E +  GL  N ++Y  M      +GN   AS L S+ 
Sbjct: 775 VFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRF 815



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/258 (19%), Positives = 114/258 (44%), Gaps = 10/258 (3%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  +I   C   KV+ A  ++E+M      P+  T  S++    +    +    ++   
Sbjct: 616 AYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEA 675

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
             + +K N   + S+I    K+   D AY ++++L +  L P    +N ++    + +++
Sbjct: 676 KSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEI 735

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMAL 189
             AL+  + M+     P+  T+S LI+         K   ++++++  G +     +  +
Sbjct: 736 NEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTM 795

Query: 190 INAYTTCGEFEKARQVV----LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
           I+     G   +A  +      +  IP    S   +A++  L+S  +  DA  ++EE + 
Sbjct: 796 ISGLAKAGNILEASGLFSRFKANGGIP---DSASYNAMIEGLSSANKAMDAYALFEETRL 852

Query: 246 AGCNLEPRAVIALIEHLN 263
            GCN+  +  + L++ L+
Sbjct: 853 KGCNIHTKTCVVLLDALH 870



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/278 (20%), Positives = 127/278 (45%), Gaps = 13/278 (4%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           PSS    +L+       K+  A D+++ M + +  P+      ++ A  E  E + +  +
Sbjct: 158 PSSNISIELVANCVKSRKLREAFDIIQTMRKFKFRPAFSAYTILIGALSEVREPDPMLIL 217

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +     + N   F ++I +  +    D+A SLLD++K  +L     +YN  +  + +
Sbjct: 218 FHQMQELGYEVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGK 277

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYV 185
              V  +     EM+   + PD  T++ +I      +  ++ ++ +EQL+        Y 
Sbjct: 278 AGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYA 337

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSA-----LVSALASHGRTSDAIIVY 240
           +  +I  Y + G+F++A  ++       K++  + S      +++ L    R  +A+ ++
Sbjct: 338 YNTMIMGYGSAGKFDEAYGLLERQ----KAKGSIPSVIAYNCILTCLGKKRRVEEALRIF 393

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           EE+K       P   I LI+ L  EG+LN  +++ +++
Sbjct: 394 EEMKRDAVPNVPTYNI-LIDMLCREGKLNAALEIRDDM 430



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 80/419 (19%), Positives = 177/419 (42%), Gaps = 31/419 (7%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  +I   C   ++  A+++ EQ+ Q   VP     N+++     + +F+   
Sbjct: 296 LMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFD--- 352

Query: 67  RIYPMICHHNLK---PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             Y ++     K   P+   +  +++   K +  + A  + +++K  + +P    YN ++
Sbjct: 353 EAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKR-DAVPNVPTYNILI 411

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQ 180
               R+  +  AL +  +ME+A + P+  T + +I   C  +  E+    +E +      
Sbjct: 412 DMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCT 471

Query: 181 ITKYVFMALINAYTTCGEFEKARQV---VLD-AEIPVKSRSEVKSALVSALASHGRTSDA 236
                F +LI+    CG  + A  +   +LD   +P    + V ++L+ +    GR  D 
Sbjct: 472 PNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVP---GAIVYTSLIRSFFKCGRKEDG 528

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDG-CCRLILHC 295
             +Y+E+   GC+ +   +   ++ +   GE  +   L  E++   +  D     +++H 
Sbjct: 529 HKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHG 588

Query: 296 VRFKQLSSATDLLKQLKDKFKDDEMAMEYH----FSEIFCQIATTDPPDVQIGLDLLQFI 351
           +    L++ T    +L    K+    ++ H      + FC+        V     LL+ +
Sbjct: 589 LVKAGLANET---YELFYAMKEQGCVLDTHAYNAVIDGFCKSGK-----VNKAYQLLEEM 640

Query: 352 KDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASG 410
           K + G PP+      ++        L  A+++++E ++ G+  NV+ Y  +   F   G
Sbjct: 641 KVK-GHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVG 698



 Score = 39.7 bits (91), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 41/242 (16%), Positives = 101/242 (41%), Gaps = 4/242 (1%)

Query: 39  QGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFD 98
           Q E V   E  NS+L     + EF+ + RI   +      P+S     +++  VK +   
Sbjct: 118 QTEKVHCPEAYNSLLMVMARNTEFDHLERILEEMSLSGFGPSSNISIELVANCVKSRKLR 177

Query: 99  SAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            A+ ++  +++    P  S Y  ++      ++    L++  +M++   + +   F+ LI
Sbjct: 178 EAFDIIQTMRKFKFRPAFSAYTILIGALSEVREPDPMLILFHQMQELGYEVNVHLFTTLI 237

Query: 159 HNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKS 215
              + E  +   +   +++KS        ++   I+ +   G+ + + +   + +     
Sbjct: 238 RVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLM 297

Query: 216 RSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQL 274
             +V  ++++  L    R  +A+ ++E++++        A   +I    S G+ +    L
Sbjct: 298 PDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGL 357

Query: 275 LE 276
           LE
Sbjct: 358 LE 359


>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 104/461 (22%), Positives = 176/461 (38%), Gaps = 84/461 (18%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K +  P+  +Y  LI   C   K++ AL++ + M +  L P+  T+N ++    ++ +  
Sbjct: 152 KRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLE 211

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               I+  +      PN+ TF S+I    K    D AYSL + + +   +P A +Y +++
Sbjct: 212 EACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLI 271

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK 183
             +F+    +    + KEM      PD                                 
Sbjct: 272 RSFFKCGRKEDGHKIYKEMVHTGCSPD--------------------------------- 298

Query: 184 YVFMALINAYTTC----GEFEKARQVVLDAE----IPVKSRSEVKSALVSALASHGRTSD 235
              + LIN Y  C    GE EK R +  +      IP  +RS   S L+  L   G  ++
Sbjct: 299 ---LTLINTYMDCVFKAGETEKGRALFREINAHGFIP-DARS--YSILIHGLVKAGLANE 352

Query: 236 AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV----HDPDYWMDGCCRL 291
              ++  +KE GC L+  A  A+I+     G++N+  QLLEE+    H P     G   +
Sbjct: 353 TYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYG--SV 410

Query: 292 ILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTD-------------- 337
           I    +  +L  A  L ++ K       + +     + F ++   D              
Sbjct: 411 IDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGL 470

Query: 338 PPDVQI----------------GLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAH 381
            P+V                   L   Q +KD L  PP++     L+      R   +A 
Sbjct: 471 TPNVYTWNCLLDALVKAEEINEALICFQSMKD-LKCPPNQITYSILINGLCRVRKFNKAF 529

Query: 382 LIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           + W+E +  GL  N ++Y  M      +GN   AS L S+ 
Sbjct: 530 VFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRF 570



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/258 (19%), Positives = 114/258 (44%), Gaps = 10/258 (3%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  +I   C   KV+ A  ++E+M      P+  T  S++    +    +    ++   
Sbjct: 371 AYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEA 430

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
             + +K N   + S+I    K+   D AY ++++L +  L P    +N ++    + +++
Sbjct: 431 KSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEI 490

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMAL 189
             AL+  + M+     P+  T+S LI+         K   ++++++  G +     +  +
Sbjct: 491 NEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTM 550

Query: 190 INAYTTCGEFEKARQVV----LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
           I+     G   +A  +      +  IP    S   +A++  L+S  +  DA  ++EE + 
Sbjct: 551 ISGLAKAGNILEASGLFSRFKANGGIP---DSASYNAMIEGLSSANKAMDAYALFEETRL 607

Query: 246 AGCNLEPRAVIALIEHLN 263
            GCN+  +  + L++ L+
Sbjct: 608 KGCNIHTKTCVVLLDALH 625



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 76/411 (18%), Positives = 155/411 (37%), Gaps = 52/411 (12%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
            P + +Y  +I       K   A  ++E+      +PS    N IL    +        R
Sbjct: 87  VPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALR 146

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           I+  +   +  PN  T+  +I +  +    ++A  + DD++   L P     N ++    
Sbjct: 147 IFEEM-KRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLC 205

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKY 184
           + + ++ A  + + M+     P++ TFS LI     C   +D    YE++   G      
Sbjct: 206 KAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAI 265

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           V+ +LI ++  CG                                  R  D   +Y+E+ 
Sbjct: 266 VYTSLIRSFFKCG----------------------------------RKEDGHKIYKEMV 291

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDG-CCRLILHCVRFKQLSS 303
             GC+ +   +   ++ +   GE  +   L  E++   +  D     +++H +    L++
Sbjct: 292 HTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLAN 351

Query: 304 ATDLLKQLKDKFKDDEMAMEYH----FSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPP 359
            T    +L    K+    ++ H      + FC+        V     LL+ +K + G PP
Sbjct: 352 ET---YELFYAMKEQGCVLDTHAYNAVIDGFCK-----SGKVNKAYQLLEEMKVK-GHPP 402

Query: 360 SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASG 410
           +      ++        L  A+++++E ++ G+  NV+ Y  +   F   G
Sbjct: 403 TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVG 453



 Score = 38.5 bits (88), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 39/208 (18%), Positives = 92/208 (44%), Gaps = 32/208 (15%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
              P+S     +++  VK +    A+ ++  +++    P  S Y  ++         +  
Sbjct: 5   GFGPSSNISIELVANCVKSRKLREAFDIIQTMRKFKFRPAFSAYTILIG--------KVG 56

Query: 136 LMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTT 195
           LM+L              F +++   +  ++ ++ +EQL+        Y +  +I  Y +
Sbjct: 57  LMLL--------------FPWVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGS 102

Query: 196 CGEFEKARQVVLDAEIPVKSRSEVKSA-----LVSALASHGRTSDAIIVYEEIKEAGCNL 250
            G+F++A   +L+ +   K++  + S      +++ L    R  +A+ ++EE+K      
Sbjct: 103 AGKFDEAYG-LLERQ---KAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPN 158

Query: 251 EPRAVIALIEHLNSEGELNRLIQLLEEV 278
            P   I LI+ L  EG+LN  +++ +++
Sbjct: 159 VPTYNI-LIDMLCREGKLNAALEIRDDM 185


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 134/286 (46%), Gaps = 9/286 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I+P   +Y  LI+  C L K++ A+D+  +M+   + P   T N +++A  +  +    +
Sbjct: 256 ISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGK 315

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++ M+    +KPN  T+ S++     +K+ + A S+ + + +  + P    Y+ ++ G+
Sbjct: 316 TVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGF 375

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITK 183
            + K    A+ + KEM + N+ PD  T+S LI   S    I   ++  +Q+   G   T 
Sbjct: 376 CKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTI 435

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             + ++++A     + +KA  ++    +  ++      S L+  L   G+  DA  V+E 
Sbjct: 436 RTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEG 495

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC 288
           +   G NL       +I+    EG  N  + LL ++ D     +GC
Sbjct: 496 LLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMED-----NGC 536



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 84/422 (19%), Positives = 165/422 (39%), Gaps = 12/422 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P+  +   LI   C L  +  A  V  ++++   VP T T  +++       +     
Sbjct: 116 IKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAF 175

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
             +  +       +  ++ ++I    K+ +  +A  LL  +    + P   MYN I+   
Sbjct: 176 LFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSM 235

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
            + K V  A  +  EM    + PD  T+S LI          D I  + ++     +   
Sbjct: 236 CKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDV 295

Query: 184 YVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           Y F  L+NA+   G+ ++ + V  +  +  +K      ++L+         + A  ++  
Sbjct: 296 YTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNT 355

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQ 300
           + + G N + ++   +I       + +  + L +E+H  +   D      LI    +  +
Sbjct: 356 MAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGR 415

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS 360
           +S A  L+ Q+ D+     +       +  C+I   D       + LL  +KD+ G+ P+
Sbjct: 416 ISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDK-----AIALLTKLKDK-GIQPN 469

Query: 361 RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420
                 L+     +  L+ A  +++     G   NV +Y  M + F   G    A  LLS
Sbjct: 470 MYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLS 529

Query: 421 KM 422
           KM
Sbjct: 530 KM 531



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 92/205 (44%), Gaps = 3/205 (1%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M  K  I P+  +Y  L+   C + +V+ A  +   M QG + P  ++ + +++   +  
Sbjct: 320 MMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIK 379

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           +F+    ++  +   N+ P+  T+ S+I    K      A  L+D + +  + PT   YN
Sbjct: 380 KFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYN 439

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSA 177
           +I+    +   V  A+ +L +++   ++P+  T+S LI         ED  K +E L   
Sbjct: 440 SILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVK 499

Query: 178 GGQITKYVFMALINAYTTCGEFEKA 202
           G  +    +  +I  +   G F +A
Sbjct: 500 GHNLNVDTYTIMIQGFCVEGLFNEA 524


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 134/286 (46%), Gaps = 9/286 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I+P   +Y  LI+  C L K+  A+D+  +M+   + P   T N +++A  +  +    +
Sbjct: 256 ISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGK 315

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++ M+    +KPN  T+ S++     +K+ + A S+ + + +  + P    Y+ ++ G+
Sbjct: 316 TVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGF 375

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITK 183
            + K    A+ + KEM + N+ PD  T+S LI   S    I   ++  +Q+   G     
Sbjct: 376 CKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNI 435

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             + ++++A     + +KA  ++    +   +      S L+  L   G+  DA  V+E+
Sbjct: 436 CTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFED 495

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC 288
           +   G NL+  A   +I+    EG  N  + LL ++ D     +GC
Sbjct: 496 LLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMED-----NGC 536



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 90/205 (43%), Gaps = 3/205 (1%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M  K  I P+  +Y  L+   C + +V+ A  +   M QG + P  ++ + +++   +  
Sbjct: 320 MMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIK 379

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           +F+    ++  +   N+ P+  T+ S+I    K      A  L+D + +  + P    YN
Sbjct: 380 KFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYN 439

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSA 177
           +I+    +   V  A+ +L + +    +PD  T+S LI         ED  K +E L   
Sbjct: 440 SILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVK 499

Query: 178 GGQITKYVFMALINAYTTCGEFEKA 202
           G  +  Y +  +I  +   G F +A
Sbjct: 500 GYNLDVYAYTIMIQGFCVEGLFNEA 524



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 82/422 (19%), Positives = 162/422 (38%), Gaps = 12/422 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P+  +   LI   C L  +  A  V  ++++   VP T T  ++        +     
Sbjct: 116 IKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAF 175

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
             +  +       +  ++ ++I    K+ +  +A  LL  +    + P   MYN I+   
Sbjct: 176 LFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSM 235

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
            + K V  A  +  EM    + PD  T+S LI         +D I  + ++     +   
Sbjct: 236 CKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDV 295

Query: 184 YVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           Y F  L+NA+   G+ ++ + V  +  +  +K      ++L+         + A  ++  
Sbjct: 296 YTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNT 355

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQ 300
           + + G N + ++   +I       + +  + L +E+H  +   D      LI    +  +
Sbjct: 356 MAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGR 415

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS 360
           +S A  L+ Q+ D+     +       +  C+    D       + LL   KD+ G  P 
Sbjct: 416 ISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDK-----AIALLTKFKDK-GFQPD 469

Query: 361 RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420
                 L+     +  L+ A  ++++    G   +V +Y  M + F   G    A  LLS
Sbjct: 470 ISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLS 529

Query: 421 KM 422
           KM
Sbjct: 530 KM 531



 Score = 43.5 bits (101), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 5/160 (3%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           MH K  I P   +Y  LI       ++  AL +V+QM    + P+  T NSIL A  +++
Sbjct: 391 MHRK-NIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTH 449

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL--KEMNLMPTASM 118
           + +    +         +P+  T+  +I    +    + A  + +DL  K  NL   A  
Sbjct: 450 QVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYA-- 507

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
           Y  ++ G+  +     AL +L +ME     PD++T+  +I
Sbjct: 508 YTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIII 547


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 94/431 (21%), Positives = 182/431 (42%), Gaps = 30/431 (6%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  LI   C + KVH A  ++++M +  L P+  T ++++H      + +   ++
Sbjct: 159 PNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKL 218

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +  +   PN  T+ +++S   +    D AY LLD+++E  L P    Y+ +MAG  +
Sbjct: 219 FRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCK 278

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYV 185
              +  AL V ++    +  PD   +S LI         ++  K +E+++    +     
Sbjct: 279 TGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVT 338

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIK 244
           F AL++        ++A+QV+   E    + + +  S+L+  L   G+  DA  V++ + 
Sbjct: 339 FTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMI 398

Query: 245 EAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHD----PDY-----WMDGCCRLIL 293
             G  +EP  V   +LI        ++  + L+EE+      PD       +DG C+   
Sbjct: 399 VRG--IEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKT-- 454

Query: 294 HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKD 353
                 +   A  L   +K KF + ++         FC++   D     +   L   +  
Sbjct: 455 -----GRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERID-----MARTLFDDMLK 504

Query: 354 ELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRK 413
           +  LP        + G C NA  +  A  + +E   +    +V +Y  +   F   G   
Sbjct: 505 QAVLPDVVTFSTLVEGYC-NAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMV 563

Query: 414 SASKLLSKMPK 424
            A ++L +M K
Sbjct: 564 EARRVLKRMAK 574



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 67/312 (21%), Positives = 129/312 (41%), Gaps = 40/312 (12%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P+  +Y  LI   C    V  AL ++E+M     +P   T N+++    ++       
Sbjct: 402 IEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEAN 461

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R++  +      P+  T+  +I    K++  D A +L DD+ +  ++P    ++ ++ GY
Sbjct: 462 RLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGY 521

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-------------------------- 160
                V  A  +L+EM  ++  PD  T++ L+                            
Sbjct: 522 CNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNV 581

Query: 161 ----------CSNEEDIIKY--YEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV-- 206
                     C   +  + Y   E++   G Q     + +LI  +   G+ E+AR+++  
Sbjct: 582 VTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILER 641

Query: 207 LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
           L+ +   K+       ++  L   GR S A+ + E IK++G        +ALI  L    
Sbjct: 642 LERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGK 701

Query: 267 ELNRLIQLLEEV 278
           EL + +++LEE+
Sbjct: 702 ELGKAMEVLEEM 713



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 68/312 (21%), Positives = 129/312 (41%), Gaps = 40/312 (12%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           ITP+  +Y  +I   C    +  A +++E+M +   VP     N ++HA C+       +
Sbjct: 55  ITPNVFTYAVVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKAL 114

Query: 66  RRIYPMICHHNL-------------------------------KPNSETFRSMISLNVKI 94
                M C  N+                                PN  T+  +I+   K+
Sbjct: 115 DYFRSMECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKV 174

Query: 95  KDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTF 154
                AY LL ++KE  L P    Y+ ++ G+ R+  V  A  + ++M +    P+  T+
Sbjct: 175 HKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTY 234

Query: 155 SYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD--- 208
           + L+   C N   ++  +  ++++  G Q  K+ +  L+      G+ + A +V  D   
Sbjct: 235 NTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSN 294

Query: 209 AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGEL 268
            + P    +   S L++ L   GR  +A  ++E+++E  C  +     AL++ L     L
Sbjct: 295 GDCPPDVVA--YSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRL 352

Query: 269 NRLIQLLEEVHD 280
               Q+LE + D
Sbjct: 353 QEAQQVLETMED 364



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 108/246 (43%), Gaps = 6/246 (2%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  + P   ++  L+   C+   V  A  ++E+MV  +  P   T  S++    +     
Sbjct: 504 KQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMV 563

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             RR+   +     +PN  T+ ++I    +      AY LL+++    + P    Y +++
Sbjct: 564 EARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLI 623

Query: 124 AGYFRKKDVQGALMVLKEMEQ-ANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGG 179
            G+    D++ A  +L+ +E+  N K D   +  ++        +   ++  E +K +G 
Sbjct: 624 GGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGT 683

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSR--SEVKSALVSALASHGRTSDAI 237
                +++ALI       E  KA +V+ +  +  KSR  +E   A++  LA  GR  +A 
Sbjct: 684 PPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQELAREGRHEEAN 743

Query: 238 IVYEEI 243
            + +E+
Sbjct: 744 ALADEL 749



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 83/451 (18%), Positives = 183/451 (40%), Gaps = 33/451 (7%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   SY  L+   C   K+ +AL V E    G+  P     ++++    ++   +   
Sbjct: 262 LQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEAC 321

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++  +  ++ +P+  TF +++    K      A  +L+ +++ N  P    Y++++ G 
Sbjct: 322 KLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGL 381

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
            +   V+ A  V K M    ++P+  T++ LIH     +  +  +   E++ + G     
Sbjct: 382 CKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDI 441

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEE 242
             +  LI+     G   +A ++  D +    +   +  S L+       R   A  ++++
Sbjct: 442 ITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDD 501

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV----HDPDYW-----MDGCCRLIL 293
           + +     +      L+E   + G ++   +LLEE+      PD +     +DG C++  
Sbjct: 502 MLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKV-- 559

Query: 294 HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKD 353
                 ++  A  +LK++  +     +       + FC+      P V   L L + + +
Sbjct: 560 -----GRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGK---PTVAYRL-LEEMVGN 610

Query: 354 ELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYE-NAGLPYNVLSYLWMYKAFLASGNR 412
             G+ P+      L+G      DL+ A  I +  E +     ++ +Y  M      +G  
Sbjct: 611 --GVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRM 668

Query: 413 KSASKLLSKM------PKDDPHVRFVIQACK 437
            +A +LL  +      P+ D +V  +   C+
Sbjct: 669 SAALELLEAIKQSGTPPRHDIYVALIRGLCQ 699



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 2/164 (1%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           AK    P+  +Y  LI   C   K  VA  ++E+MV   + P+  T  S++     + + 
Sbjct: 573 AKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDL 632

Query: 63  NLVRRIYPMICH-HNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
              R+I   +    N K +   +R M+    +     +A  LL+ +K+    P   +Y A
Sbjct: 633 EEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVA 692

Query: 122 IMAGYFRKKDVQGALMVLKEMEQAN-VKPDSQTFSYLIHNCSNE 164
           ++ G  + K++  A+ VL+EM  +   +P+++ +  +I   + E
Sbjct: 693 LIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQELARE 736


>gi|358346492|ref|XP_003637301.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
 gi|355503236|gb|AES84439.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
          Length = 190

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 83/165 (50%), Gaps = 2/165 (1%)

Query: 270 RLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEI 329
           R + LL E+   D W+ GC  +I   V  K LSS  ++ KQL D FK  E      F E+
Sbjct: 2   RSLLLLTELSGED-WVQGCKIVIQFSVENKNLSSTIEMFKQLMDYFKHGENKSNSVFDEV 60

Query: 330 FCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYEN 389
           +  I       +Q GLDLL  IK ELGL P   CL  LL  CV +RDL  AHL+W+E+  
Sbjct: 61  YYPILVYGSTHLQFGLDLLDLIKKELGLVPPSLCLHSLLCCCVKSRDLNNAHLVWREFAG 120

Query: 390 AGL-PYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVI 433
            G   Y   S   MY A  A G+ KSA  +  K+ + D    F I
Sbjct: 121 DGRDGYESFSCYLMYCALSALGDHKSADIIFKKLQRGDGERDFKI 165


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 95/431 (22%), Positives = 183/431 (42%), Gaps = 30/431 (6%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  LI   C + KVH A  ++++M +  L P+  T ++++H      + +   ++
Sbjct: 40  PNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKL 99

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +  +   PN  T+ +++S   +    D AY LLD+++E  L P    Y+ +MAG  +
Sbjct: 100 FRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCK 159

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYV 185
              +  AL V ++    +  PD   +S LI   C     ++  K +E+++    +     
Sbjct: 160 TGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVT 219

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIK 244
           F AL++        ++A+QV+   E    + + +  S+L+  L   G+  DA  V++ + 
Sbjct: 220 FTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMI 279

Query: 245 EAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHD----PDY-----WMDGCCRLIL 293
             G  +EP  V   +LI        ++  + L+EE+      PD       +DG C+   
Sbjct: 280 VRG--IEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKT-- 335

Query: 294 HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKD 353
                 +   A  L   +K KF + ++         FC++   D     +   L   +  
Sbjct: 336 -----GRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERID-----MARTLFDDMLK 385

Query: 354 ELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRK 413
           +  LP        + G C NA  +  A  + +E   +    +V +Y  +   F   G   
Sbjct: 386 QAVLPDVVTFSTLVEGYC-NAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMV 444

Query: 414 SASKLLSKMPK 424
            A ++L +M K
Sbjct: 445 EARRVLKRMAK 455



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/312 (21%), Positives = 129/312 (41%), Gaps = 40/312 (12%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P+  +Y  LI   C    V  AL ++E+M     +P   T N+++    ++       
Sbjct: 283 IEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEAN 342

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R++  +      P+  T+  +I    K++  D A +L DD+ +  ++P    ++ ++ GY
Sbjct: 343 RLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGY 402

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-------------------------- 160
                V  A  +L+EM  ++  PD  T++ L+                            
Sbjct: 403 CNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNV 462

Query: 161 ----------CSNEEDIIKY--YEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV-- 206
                     C   +  + Y   E++   G Q     + +LI  +   G+ E+AR+++  
Sbjct: 463 VTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLER 522

Query: 207 LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
           L+ +   K+       ++  L   GR S A+ + E IK++G        +ALI  L    
Sbjct: 523 LERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGK 582

Query: 267 ELNRLIQLLEEV 278
           EL + +++LEE+
Sbjct: 583 ELGKAMEVLEEM 594



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 108/246 (43%), Gaps = 6/246 (2%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  + P   ++  L+   C+   V  A  ++E+MV  +  P   T  S++    +     
Sbjct: 385 KQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMV 444

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             RR+   +     +PN  T+ ++I    +      AY LL+++    + P    Y +++
Sbjct: 445 EARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLI 504

Query: 124 AGYFRKKDVQGALMVLKEMEQ-ANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGG 179
            G+    D++ A  +L+ +E+  N K D   +  ++        +   ++  E +K +G 
Sbjct: 505 GGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGT 564

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSR--SEVKSALVSALASHGRTSDAI 237
                +++ALI       E  KA +V+ +  +  KSR  +E   A++  LA  GR  +A 
Sbjct: 565 PPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQELAREGRHEEAN 624

Query: 238 IVYEEI 243
            + +E+
Sbjct: 625 ALADEL 630



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/451 (18%), Positives = 183/451 (40%), Gaps = 33/451 (7%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   SY  L+   C   K+ +AL V E    G+  P     ++++    ++   +   
Sbjct: 143 LQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEAC 202

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++  +  ++ +P+  TF +++    K      A  +L+ +++ N  P    Y++++ G 
Sbjct: 203 KLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGL 262

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
            +   V+ A  V K M    ++P+  T++ LIH     +  +  +   E++ + G     
Sbjct: 263 CKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDI 322

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEE 242
             +  LI+     G   +A ++  D +    +   +  S L+       R   A  ++++
Sbjct: 323 ITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDD 382

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV----HDPDYW-----MDGCCRLIL 293
           + +     +      L+E   + G ++   +LLEE+      PD +     +DG C++  
Sbjct: 383 MLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKV-- 440

Query: 294 HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKD 353
                 ++  A  +LK++  +     +       + FC+      P V   L L + + +
Sbjct: 441 -----GRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAG---KPTVAYKL-LEEMVGN 491

Query: 354 ELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYE-NAGLPYNVLSYLWMYKAFLASGNR 412
             G+ P+      L+G      DL+ A  + +  E +     ++ +Y  M      +G  
Sbjct: 492 --GVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRM 549

Query: 413 KSASKLLSKM------PKDDPHVRFVIQACK 437
            +A +LL  +      P+ D +V  +   C+
Sbjct: 550 SAALELLEAIKQSGTPPRHDIYVALIRGLCQ 580


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 108/459 (23%), Positives = 182/459 (39%), Gaps = 56/459 (12%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           PS  SY  +++      +V  AL   E+M + + +P+  T N ++    ++ +      +
Sbjct: 373 PSVVSYNCILSCLGRKGQVDEALKKFEEM-KKDAIPNLSTYNIMIDMLCKAGKLETALVV 431

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    L PN  T   M+    K +  D A S+ + L      P A  Y +++ G  R
Sbjct: 432 RDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGR 491

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYV 185
              V  A  + ++M  AN  P++  ++ LI N   C  +ED  K Y ++   G       
Sbjct: 492 HGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPD--- 548

Query: 186 FMALINAYTTC----GEFEKARQVVLDAE----IPVKSRSEVKSALVSALASHGRTSDAI 237
            + L+N Y  C    GE EK R +  + +    IP  +RS   + L+  L   G   +A 
Sbjct: 549 -LLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIP-DARS--YTILIHGLVKAGFAHEAY 604

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV----HDPDYWMDGCCRLIL 293
            ++  +KE GC L+ RA   +I+     G++N+  QLLEE+    H+P     G   +I 
Sbjct: 605 ELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYG--SVID 662

Query: 294 HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTD--------------PP 339
              +  +L  A  L ++ K K  +  + +     + F ++   D               P
Sbjct: 663 GLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP 722

Query: 340 DVQI----------------GLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLI 383
           +V                   L   Q +KD L   P+      L+      R   +A + 
Sbjct: 723 NVYTWNCLLDALVKAEEISEALVCFQSMKD-LKCTPNYITYSILIHGLCKIRKFNKAFVF 781

Query: 384 WKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           W+E +  G   NV +Y  M      +GN   A  L  K 
Sbjct: 782 WQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKF 820



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/255 (19%), Positives = 115/255 (45%), Gaps = 4/255 (1%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  +I   C   KV+ A  ++E+M      P+  T  S++    +    +    ++   
Sbjct: 621 AYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEA 680

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               ++ N   + S+I    K+   D AY ++++L +  L P    +N ++    + +++
Sbjct: 681 KSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEI 740

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMAL 189
             AL+  + M+     P+  T+S LIH         K   ++++++  G +   + +  +
Sbjct: 741 SEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTM 800

Query: 190 INAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC 248
           I+     G   +A  +     E    + S + +A++  L++  R SDA  ++EE +  GC
Sbjct: 801 ISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGC 860

Query: 249 NLEPRAVIALIEHLN 263
           ++  +  + L++ L+
Sbjct: 861 SIYTKTCVVLLDSLH 875



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/224 (19%), Positives = 96/224 (42%), Gaps = 4/224 (1%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           K+  A   ++ M + +  P+     +++ A   S + + +  ++  +       N   F 
Sbjct: 180 KLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFT 239

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           ++I +  +    D+A SLLD++K  +L P   +YN  +  + +   V  A     EM+  
Sbjct: 240 TLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKAN 299

Query: 146 NVKPDSQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
            +  D  T++ +I      +   + ++ +E +         Y +  +I  Y   G+FE A
Sbjct: 300 GLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDA 359

Query: 203 RQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKE 245
             ++          S V  + ++S L   G+  +A+  +EE+K+
Sbjct: 360 YSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKK 403



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 55/119 (46%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           +TP+  ++  L+       ++  AL   + M   +  P+  T + ++H   +  +FN   
Sbjct: 720 LTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAF 779

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +  +     KPN  T+ +MIS   K  +   A +L +  KE   +  +++YNAI+ G
Sbjct: 780 VFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEG 838



 Score = 39.7 bits (91), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 34/211 (16%), Positives = 88/211 (41%), Gaps = 20/211 (9%)

Query: 47  ETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDD 106
           E  NS+L     + +FN + +I   +      P++ T   ++   +K +    A++ +  
Sbjct: 131 EAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQT 190

Query: 107 LKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED 166
           ++++   P  S Y  ++      +D    L + ++M++     +   F+ LI   + E  
Sbjct: 191 MRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGR 250

Query: 167 I---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFE---------KARQVVLDAEIPVK 214
           +   +   +++KS   +    ++   I+ +   G+ +         KA  +VLD      
Sbjct: 251 VDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLD------ 304

Query: 215 SRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
                 ++++  L    R ++A+ ++E + +
Sbjct: 305 --DVTYTSMIGVLCKADRLNEAVELFEHMDQ 333


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 108/459 (23%), Positives = 182/459 (39%), Gaps = 56/459 (12%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           PS  SY  +++      +V  AL   E+M + + +P+  T N ++    ++ +      +
Sbjct: 373 PSVVSYNCILSCLGRKGQVDEALKKFEEM-KKDAIPNLSTYNIMIDMLCKAGKLETALVV 431

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    L PN  T   M+    K +  D A S+ + L      P A  Y +++ G  R
Sbjct: 432 RDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGR 491

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYV 185
              V  A  + ++M  AN  P++  ++ LI N   C  +ED  K Y ++   G       
Sbjct: 492 HGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPD--- 548

Query: 186 FMALINAYTTC----GEFEKARQVVLDAE----IPVKSRSEVKSALVSALASHGRTSDAI 237
            + L+N Y  C    GE EK R +  + +    IP  +RS   + L+  L   G   +A 
Sbjct: 549 -LLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIP-DARS--YTILIHGLVKAGFAHEAY 604

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV----HDPDYWMDGCCRLIL 293
            ++  +KE GC L+ RA   +I+     G++N+  QLLEE+    H+P     G   +I 
Sbjct: 605 ELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYG--SVID 662

Query: 294 HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTD--------------PP 339
              +  +L  A  L ++ K K  +  + +     + F ++   D               P
Sbjct: 663 GLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP 722

Query: 340 DVQI----------------GLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLI 383
           +V                   L   Q +KD L   P+      L+      R   +A + 
Sbjct: 723 NVYTWNCLLDALVKAEEISEALVCFQSMKD-LKCTPNYITYSILIHGLCKIRKFNKAFVF 781

Query: 384 WKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           W+E +  G   NV +Y  M      +GN   A  L  K 
Sbjct: 782 WQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKF 820



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/257 (19%), Positives = 116/257 (45%), Gaps = 4/257 (1%)

Query: 11  SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYP 70
           + +Y  +I   C   KV+ A  ++E+M      P+  T  S++    +    +    ++ 
Sbjct: 619 TRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFE 678

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
                 ++ N   + S+I    K+   D AY ++++L +  L P    +N ++    + +
Sbjct: 679 EAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAE 738

Query: 131 DVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFM 187
           ++  AL+  + M+     P+  T+S LIH         K   ++++++  G +   + + 
Sbjct: 739 EISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYT 798

Query: 188 ALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA 246
            +I+     G   +A  +     E    + S + +A++  L++  R SDA  ++EE +  
Sbjct: 799 TMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLK 858

Query: 247 GCNLEPRAVIALIEHLN 263
           GC++  +  + L++ L+
Sbjct: 859 GCSIYTKTCVVLLDSLH 875



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/224 (19%), Positives = 96/224 (42%), Gaps = 4/224 (1%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           K+  A   ++ M + +  P+     +++ A   S + + +  ++  +       N   F 
Sbjct: 180 KLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFT 239

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           ++I +  +    D+A SLLD++K  +L P   +YN  +  + +   V  A     EM+  
Sbjct: 240 TLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKAN 299

Query: 146 NVKPDSQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
            +  D  T++ +I      +   + ++ +E +         Y +  +I  Y   G+FE A
Sbjct: 300 GLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDA 359

Query: 203 RQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKE 245
             ++          S V  + ++S L   G+  +A+  +EE+K+
Sbjct: 360 YSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKK 403



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 55/119 (46%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           +TP+  ++  L+       ++  AL   + M   +  P+  T + ++H   +  +FN   
Sbjct: 720 LTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAF 779

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +  +     KPN  T+ +MIS   K  +   A +L +  KE   +  +++YNAI+ G
Sbjct: 780 VFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEG 838



 Score = 39.7 bits (91), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 34/211 (16%), Positives = 88/211 (41%), Gaps = 20/211 (9%)

Query: 47  ETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDD 106
           E  NS+L     + +FN + +I   +      P++ T   ++   +K +    A++ +  
Sbjct: 131 EAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQT 190

Query: 107 LKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED 166
           ++++   P  S Y  ++      +D    L + ++M++     +   F+ LI   + E  
Sbjct: 191 MRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGR 250

Query: 167 I---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFE---------KARQVVLDAEIPVK 214
           +   +   +++KS   +    ++   I+ +   G+ +         KA  +VLD      
Sbjct: 251 VDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLD------ 304

Query: 215 SRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
                 ++++  L    R ++A+ ++E + +
Sbjct: 305 --DVTYTSMIGVLCKADRLNEAVELFEHMDQ 333


>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
          Length = 578

 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 176/393 (44%), Gaps = 25/393 (6%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           PST ++N++L     +   +L  + +       + P+  TF ++IS   +I     A  +
Sbjct: 154 PSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDV 213

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGAL---MVLKEMEQANVKPDSQTFSYLIHN 160
             D+K   L P+ + YN+++ GY +K          M+LKEM +A + P + TF  LI+ 
Sbjct: 214 AKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLING 273

Query: 161 -C--SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRS 217
            C  SN    ++ +E++K  G   +   + +LI+   + G+ E+  +++ + E    S +
Sbjct: 274 YCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPN 333

Query: 218 EVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQL 274
           E+    ++      G  +DA    + + E   N+EP  VI   LI+     G++   + +
Sbjct: 334 EITFGCVLKGFCKKGMMADANDWIDGMTER--NVEPDVVIYTILIDGYRRLGKMEDAMAV 391

Query: 275 LEEVH----DPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDK-FKDDEMAMEYHFSEI 329
            E +      P+     C  LI    R     SA+ LL ++K+K  + D +        +
Sbjct: 392 KEAMAKKGISPNVTTYNC--LITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGAL 449

Query: 330 FCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYEN 389
            C+       +V+  + LL  +  E+GL P+    + ++    +  ++K A+ I    E 
Sbjct: 450 CCK------GEVRKAVKLLDEM-SEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEK 502

Query: 390 AGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
                NV++Y    K F   G    A+ LL++M
Sbjct: 503 CRKRANVVTYNVFIKYFCQIGKMDEANDLLNEM 535



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/363 (19%), Positives = 159/363 (43%), Gaps = 18/363 (4%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNL- 64
           ++P   ++  +I+  C + ++  A DV + +    L PS  T NS++   C++    N+ 
Sbjct: 187 VSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMY 246

Query: 65  -VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
            V  +   +    + P + TF  +I+   K  +  +A  + +++K+  +  +   YN+++
Sbjct: 247 HVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLI 306

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQ 180
           +G   +  V+  + +++EME   + P+  TF  ++     +    D   + + +     +
Sbjct: 307 SGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVE 366

Query: 181 ITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
               ++  LI+ Y   G+ E A  V    A+  +       + L++  +  G    A  +
Sbjct: 367 PDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGL 426

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDYWMDGCCRLILHC 295
            +E+KE G   +      LI  L  +GE+ + ++LL+E+     +P++       +I   
Sbjct: 427 LDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNT--IIQGF 484

Query: 296 VRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDEL 355
                + SA ++  +++   K   +     F + FCQI   D  +     DLL  + D+ 
Sbjct: 485 CDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEAN-----DLLNEMLDKC 539

Query: 356 GLP 358
            +P
Sbjct: 540 LVP 542


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 132/296 (44%), Gaps = 40/296 (13%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +++P++ +Y +LI   C    VH A+ V+ +M++ +++P   T NS++     S  F+  
Sbjct: 423 KLSPNTRTYNELIKGYCKS-NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSA 481

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            R+  ++    L P+  T+ SMI    K K  + A  L D L++  + P   MY A++ G
Sbjct: 482 YRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDG 541

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSN---------EEDIIKY----- 170
           Y +   V  A ++L++M   N  P+S TF+ LIH  C++         EE ++K      
Sbjct: 542 YCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPT 601

Query: 171 -----------------------YEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVL 207
                                  ++Q+ S+G +   + +   I  Y   G    A  ++ 
Sbjct: 602 VSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMA 661

Query: 208 DA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
              E  V       S+L+      G+T+ A  V + +++ GC       ++LI+HL
Sbjct: 662 KMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHL 717



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 94/447 (21%), Positives = 176/447 (39%), Gaps = 23/447 (5%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++ P+  +Y K++   C L  V  A   V ++V+  L P   T  S++    +  + +  
Sbjct: 213 KVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSA 272

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            +++  +     + N   +  +I      +  D A  L   +K+    PT   Y  ++  
Sbjct: 273 FKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKS 332

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQIT 182
               +    AL ++KEME+  +KP+  T++ LI +  ++    K  E   Q+   G    
Sbjct: 333 LCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPN 392

Query: 183 KYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
              + ALIN Y   G  E A  VV L     +   +   + L+           A+ V  
Sbjct: 393 VITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK-SNVHKAMGVLN 451

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYWMDGCCRLILHCVR 297
           ++ E     +     +LI+     G  +   +LL  ++D    PD W      +I    +
Sbjct: 452 KMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWT--YTSMIDSLCK 509

Query: 298 FKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGL 357
            K++  A DL   L+ K  +  + M     + +C+    D   +     +L+ +  +  L
Sbjct: 510 SKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHL-----MLEKMLSKNCL 564

Query: 358 PPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSA-- 415
           P S      + G C + + LK A L+ ++    GL   V +   +    L  G+   A  
Sbjct: 565 PNSLTFNALIHGLCADGK-LKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYS 623

Query: 416 --SKLLSKMPKDDPH--VRFVIQACKQ 438
              ++LS   K D H    F+   C++
Sbjct: 624 RFQQMLSSGTKPDAHTYTTFIQTYCRE 650



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 3/156 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGE-LVPSTETINSILHACEESYEFNLV 65
           +TP++ SY+KLI   C++  + VA  V + M + E + PS    N++L  C +  + N  
Sbjct: 756 VTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEA 815

Query: 66  RRIY-PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
            ++   MIC  +L P  E+ + +I    K  + +   S+  +L +         +  I+ 
Sbjct: 816 AKVVDDMICVGHL-PQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIID 874

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160
           G  ++  V+    +   ME+   K  SQT+S LI  
Sbjct: 875 GVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIEG 910



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/151 (15%), Positives = 69/151 (45%), Gaps = 1/151 (0%)

Query: 23  DLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYP-MICHHNLKPNS 81
           ++++    ++++E+MV+  + P+ ++   ++    E     +  +++  M  +  + P+ 
Sbjct: 737 NMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSE 796

Query: 82  ETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKE 141
             F +++S   K+K  + A  ++DD+  +  +P       ++ G ++K + +    V + 
Sbjct: 797 LVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQN 856

Query: 142 MEQANVKPDSQTFSYLIHNCSNEEDIIKYYE 172
           + Q     D   +  +I     +  +  +YE
Sbjct: 857 LLQCGYYEDELAWKIIIDGVGKQGLVEAFYE 887



 Score = 38.1 bits (87), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 39/180 (21%), Positives = 78/180 (43%), Gaps = 22/180 (12%)

Query: 1   MHAKLE---ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSIL-HAC 56
           M AK+    ++P   +Y  LI    DL + + A DV+++M      PS  T  S++ H  
Sbjct: 659 MMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLL 718

Query: 57  EESY-----------------EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDS 99
           E  Y                 EF+ V  +   +  H++ PN++++  +I    ++ +   
Sbjct: 719 EMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRV 778

Query: 100 AYSLLDDL-KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
           A  + D + +   + P+  ++NA+++   + K    A  V+ +M      P  ++   LI
Sbjct: 779 AEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLI 838


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 110/253 (43%), Gaps = 6/253 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  LI   C       AL ++  M      P+  T N+++ A   + E +   
Sbjct: 146 VAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAE 205

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R+  M+    LKPN  TF SM++   K    + A  + D++    L P    YN ++ GY
Sbjct: 206 RLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGY 265

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITK 183
            +      AL V  EM Q  + PD  TF+ LIH      N E  +    Q++  G Q+ +
Sbjct: 266 CKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNE 325

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             F ALI+ +   G  + A   V    +  +K      +AL++     GR  +A  +  E
Sbjct: 326 VTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHE 385

Query: 243 IKEAGCNLEPRAV 255
           ++  G  L+P  V
Sbjct: 386 MEAKG--LKPDVV 396


>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
 gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
 gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
          Length = 578

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 176/393 (44%), Gaps = 25/393 (6%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           PST ++N++L     +   +L  + +       + P+  TF ++IS   +I     A  +
Sbjct: 154 PSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDV 213

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGAL---MVLKEMEQANVKPDSQTFSYLIHN 160
             D+K   L P+ + YN+++ GY +K          M+LKEM +A + P + TF  LI+ 
Sbjct: 214 AKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLING 273

Query: 161 -C--SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRS 217
            C  SN    ++ +E++K  G   +   + +LI+   + G+ E+  +++ + E    S +
Sbjct: 274 YCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPN 333

Query: 218 EVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQL 274
           E+    ++      G  +DA    + + E   N+EP  VI   LI+     G++   + +
Sbjct: 334 EITFGCVLKGFCKKGMMADANDWIDGMTER--NVEPDVVIYNILIDVYRRLGKMEDAMAV 391

Query: 275 LEEVH----DPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDK-FKDDEMAMEYHFSEI 329
            E +      P+     C  LI    R     SA+ LL ++K+K  + D +        +
Sbjct: 392 KEAMAKKGISPNVTTYNC--LITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGAL 449

Query: 330 FCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYEN 389
            C+       +V+  + LL  +  E+GL P+    + ++    +  ++K A+ I    E 
Sbjct: 450 CCK------GEVRKAVKLLDEM-SEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEK 502

Query: 390 AGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
                NV++Y    K F   G    A+ LL++M
Sbjct: 503 CRKRANVVTYNVFIKYFCQIGKMDEANDLLNEM 535



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 72/363 (19%), Positives = 159/363 (43%), Gaps = 18/363 (4%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNL- 64
           ++P   ++  +I+  C + ++  A DV + +    L PS  T NS++   C++    N+ 
Sbjct: 187 VSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMY 246

Query: 65  -VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
            V  +   +    + P + TF  +I+   K  +  +A  + +++K+  +  +   YN+++
Sbjct: 247 HVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLI 306

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQ 180
           +G   +  V+  + +++EME   + P+  TF  ++     +    D   + + +     +
Sbjct: 307 SGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVE 366

Query: 181 ITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
               ++  LI+ Y   G+ E A  V    A+  +       + L++  +  G    A  +
Sbjct: 367 PDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGL 426

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDYWMDGCCRLILHC 295
            +E+KE G   +      LI  L  +GE+ + ++LL+E+     +P++       +I   
Sbjct: 427 LDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNT--IIQGF 484

Query: 296 VRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDEL 355
                + SA ++  +++   K   +     F + FCQI   D  +     DLL  + D+ 
Sbjct: 485 CDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEAN-----DLLNEMLDKC 539

Query: 356 GLP 358
            +P
Sbjct: 540 LVP 542


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 110/253 (43%), Gaps = 6/253 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  L+   C       AL ++  M      P+  T N+++ A   + E +   
Sbjct: 186 VAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAE 245

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R+  M+    LKPN  TF SM++   K    + A  + D++    L P    YN ++ GY
Sbjct: 246 RLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGY 305

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITK 183
            +      AL V  EM Q  + PD  TF+ LIH      N E  +    Q++  G Q+ +
Sbjct: 306 CKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNE 365

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             F ALI+ +   G  + A   V    +  +K      +AL++     GR  +A  +  E
Sbjct: 366 VTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHE 425

Query: 243 IKEAGCNLEPRAV 255
           ++  G  L+P  V
Sbjct: 426 MEAKG--LKPDVV 436



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 130/316 (41%), Gaps = 21/316 (6%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   SY  L+   C     H AL V  +M Q  ++P   T  S++H   ++       
Sbjct: 291 LAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAV 350

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +    L+ N  TF ++I    K    D A   +  +K+  + P+   YNA++ GY
Sbjct: 351 TLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGY 410

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH----NCSNEEDIIKYYEQLKSAGGQIT 182
                +  A  +L EME   +KPD  T+S +I     NC +     +  +Q+   G    
Sbjct: 411 CMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNC-DTHSAFELNQQMLEKGVLPD 469

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK--------SALVSALASHGRTS 234
              + +LI     CGE     + + DA +  K+  ++         ++L+      G   
Sbjct: 470 AITYSSLIR--VLCGE-----KRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVE 522

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV-HDPDYWMDGCCRLIL 293
            A+ +++++ +AG   +      LI  L+         QLL ++ H+     +     ++
Sbjct: 523 SALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALM 582

Query: 294 HCVRFKQLSSATDLLK 309
           HC R  +L S   LLK
Sbjct: 583 HCCRKAELKSVLALLK 598



 Score = 40.0 bits (92), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 77/176 (43%), Gaps = 23/176 (13%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           KL + P   +Y  LI   C    V  AL + ++MV+  ++P   T + +++   +S    
Sbjct: 498 KLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAM 557

Query: 64  LVRRIYPMICHHNLKPNSETFRSMI---------SLNVKIKDF---------DSAY-SLL 104
             +++   + H +  P +  + +++         S+   +K F         D  Y S+L
Sbjct: 558 EAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSML 617

Query: 105 DDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160
           D  +  NL    S+Y+ ++ G+ R  +V  AL   K+M Q    P+S +   LI  
Sbjct: 618 D--RNWNL--DGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGFAPNSTSTISLIRG 669


>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
           [Oryza sativa Japonica Group]
          Length = 571

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 176/393 (44%), Gaps = 25/393 (6%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           PST ++N++L     +   +L  + +       + P+  TF ++IS   +I     A  +
Sbjct: 154 PSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDV 213

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGAL---MVLKEMEQANVKPDSQTFSYLIHN 160
             D+K   L P+ + YN+++ GY +K          M+LKEM +A + P + TF  LI+ 
Sbjct: 214 AKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLING 273

Query: 161 -C--SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRS 217
            C  SN    ++ +E++K  G   +   + +LI+   + G+ E+  +++ + E    S +
Sbjct: 274 YCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPN 333

Query: 218 EVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQL 274
           E+    ++      G  +DA    + + E   N+EP  VI   LI+     G++   + +
Sbjct: 334 EITFGCVLKGFCKKGMMADANDWIDGMTER--NVEPDVVIYNILIDVYRRLGKMEDAMAV 391

Query: 275 LEEVH----DPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDK-FKDDEMAMEYHFSEI 329
            E +      P+     C  LI    R     SA+ LL ++K+K  + D +        +
Sbjct: 392 KEAMAKKGISPNVTTYNC--LITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGAL 449

Query: 330 FCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYEN 389
            C+       +V+  + LL  +  E+GL P+    + ++    +  ++K A+ I    E 
Sbjct: 450 CCK------GEVRKAVKLLDEM-SEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEK 502

Query: 390 AGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
                NV++Y    K F   G    A+ LL++M
Sbjct: 503 CRKRANVVTYNVFIKYFCQIGKMDEANDLLNEM 535



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 72/363 (19%), Positives = 159/363 (43%), Gaps = 18/363 (4%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNL- 64
           ++P   ++  +I+  C + ++  A DV + +    L PS  T NS++   C++    N+ 
Sbjct: 187 VSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMY 246

Query: 65  -VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
            V  +   +    + P + TF  +I+   K  +  +A  + +++K+  +  +   YN+++
Sbjct: 247 HVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLI 306

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQ 180
           +G   +  V+  + +++EME   + P+  TF  ++     +    D   + + +     +
Sbjct: 307 SGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVE 366

Query: 181 ITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
               ++  LI+ Y   G+ E A  V    A+  +       + L++  +  G    A  +
Sbjct: 367 PDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGL 426

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDYWMDGCCRLILHC 295
            +E+KE G   +      LI  L  +GE+ + ++LL+E+     +P++       +I   
Sbjct: 427 LDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNT--IIQGF 484

Query: 296 VRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDEL 355
                + SA ++  +++   K   +     F + FCQI   D  +     DLL  + D+ 
Sbjct: 485 CDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEAN-----DLLNEMLDKC 539

Query: 356 GLP 358
            +P
Sbjct: 540 LVP 542


>gi|357452715|ref|XP_003596634.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485682|gb|AES66885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 523

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/135 (42%), Positives = 81/135 (60%), Gaps = 7/135 (5%)

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFK 299
           YE++    C L       L EH  S+GE ++L+ LLEE++D  YW D CCR+IL C+  K
Sbjct: 388 YEKLISHNCAL-------LKEHNCSDGEFDQLLLLLEELNDTSYWNDACCRIILCCIWNK 440

Query: 300 QLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPP 359
           +LSSA DL K LKDK + DE+ M   F ++F +I  ++    Q  L+L   +KD+LGL P
Sbjct: 441 RLSSAIDLCKLLKDKLQMDELVMNVLFDKVFSRIEESETNHRQTCLELFLEMKDKLGLWP 500

Query: 360 SRKCLDFLLGACVNA 374
           S+K  D L  +  NA
Sbjct: 501 SQKYYDSLFVSSANA 515



 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 25/32 (78%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALD 32
           +H KLE+ PSS+SY+KLI+++C LLK H   D
Sbjct: 375 LHEKLEVLPSSSSYEKLISHNCALLKEHNCSD 406


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 93/428 (21%), Positives = 178/428 (41%), Gaps = 24/428 (5%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  LIT      +   A  + ++M +    P + T  +++ A  ++   +    +
Sbjct: 182 PDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALEL 241

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    +KP   T+ ++I+   K+ D   AY+LLD++K     P    Y+ ++ G  +
Sbjct: 242 LDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIK 301

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYV 185
              +  A  VLK+ME+    PD+ T++ LI+         D  + ++++KS G       
Sbjct: 302 ASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVT 361

Query: 186 FMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +  LI A       E A  +  + E + ++       ++++ L   G+  DA  ++ E++
Sbjct: 362 YSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMR 421

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQLS 302
             G + +     A +  L   G      ++ E++ +     D      L+L   + K++ 
Sbjct: 422 GKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVD 481

Query: 303 SATDLLKQLK------DKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELG 356
            A  LLK+L       D  K DE           C    T   +V    +LLQF   + G
Sbjct: 482 DACGLLKELIEQGCAFDSLKFDE-----------CLEILTSWGNVDEAHELLQFANSK-G 529

Query: 357 LPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSAS 416
           L P     + L+ A   A  +  A    ++ +  G   +++SY  +  A   +G   +A 
Sbjct: 530 LWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAF 589

Query: 417 KLLSKMPK 424
           +LL +M K
Sbjct: 590 ELLEEMSK 597



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 127/276 (46%), Gaps = 4/276 (1%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           TP   SY  LI       K   AL+VV +M      P+  T N+++    ++ +F+   R
Sbjct: 41  TPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALR 100

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +   +  +   P+  T+  +IS   K      A++L  +++E   +P    YN+++ G  
Sbjct: 101 LLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLG 160

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKY 184
           +    Q A+ +L+EME+    PD  T+S LI     + + +   K ++++K  G +    
Sbjct: 161 KVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSI 220

Query: 185 VFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
            F AL++A    G  + A +++ +  E  VK      +AL++     G   +A  + +E+
Sbjct: 221 TFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEM 280

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279
           K  GC  +      LI  L    +L+   Q+L+++ 
Sbjct: 281 KRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKME 316



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 90/428 (21%), Positives = 180/428 (42%), Gaps = 26/428 (6%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           +P+  +Y  L+       +   A  + E++   +  P   + + ++++   + ++     
Sbjct: 6   SPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALE 65

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +   +     KPN  T+ +++    K   FD A  LL ++++   +P    YN +++   
Sbjct: 66  VVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLG 125

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKY 184
           +   +  A  +  EM +    PD+ T++ LI+        +  ++  E+++  G      
Sbjct: 126 KAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVM 185

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSR---SEVKSALVSALASHGRTSDAIIVYE 241
            + +LI      GE  KA ++    E+  + R   S   +AL+ AL   GR  DA+ + +
Sbjct: 186 TYSSLITGLGKDGETVKAFKLF--QEMKRRGRKPDSITFTALMDALGKAGRVDDALELLD 243

Query: 242 EIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVH----DPDYWMDGCCRLILHC 295
           E+KE G  ++P  V   ALI      G+L     LL+E+      PD     C  LI   
Sbjct: 244 EMKERG--VKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSC--LITGL 299

Query: 296 VRFKQLSSATDLLKQL-KDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDE 354
           ++  QL  A  +LK++ K+    D +      + +       D         L   +K +
Sbjct: 300 IKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAG------RLFDRMKSK 353

Query: 355 LGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKS 414
            G  P       L+ A   A  ++ A ++++E E+ G+  ++ +Y  +      +G    
Sbjct: 354 -GCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDD 412

Query: 415 ASKLLSKM 422
           A +L S+M
Sbjct: 413 ADRLFSEM 420



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 117/262 (44%), Gaps = 4/262 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  LIT      +V  A  + E+M    + P   T  SI+    ++ + +   R+
Sbjct: 357 PDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRL 416

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    L P+  T+ + ++   +   F  A  + +D+KE  L+P  + Y+A++ G  +
Sbjct: 417 FSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSK 476

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK---SAGGQITKYV 185
            K+V  A  +LKE+ +     DS  F   +   ++  ++ + +E L+   S G       
Sbjct: 477 TKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASS 536

Query: 186 FMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           + ALI+A    G   +A   + D  E   K      S+L+SAL   G+   A  + EE+ 
Sbjct: 537 YNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMS 596

Query: 245 EAGCNLEPRAVIALIEHLNSEG 266
           + G  L PR+   L+  L   G
Sbjct: 597 KRGLKLSPRSYSNLVRKLQDWG 618


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 148/329 (44%), Gaps = 30/329 (9%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           ++ I  S  ++  +I   C   K+  A + +  M    + P+  T N+I+H         
Sbjct: 184 RMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVE 243

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             R I+ ++    +KP+S T+ S IS   K    + A  +L+ +KE+ L PTA  YN ++
Sbjct: 244 GARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLI 303

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH----NCSNEE--DIIKYYEQLKSA 177
            GY  K +++ A     +M +  + P   T++ LIH    +C  +E   IIK   ++   
Sbjct: 304 DGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIK---EMSEK 360

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK---SALVSALASHGRTS 234
           G       +  LIN Y  CG  +KA    L  E+  K     +   ++L+  L+  GR  
Sbjct: 361 GLVPDSVTYNILINGYCRCGNVKKA--FTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMK 418

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PD-----YWM 285
            A  ++E+I   G   +     ALI+   + G ++R   +L+E+      PD       M
Sbjct: 419 QADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLM 478

Query: 286 DGCCRLILHCVRFKQLSSATDLLKQLKDK 314
            G CR         ++ +A +L++++K +
Sbjct: 479 QGRCRE-------GKVEAARELIEEMKSR 500



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 132/282 (46%), Gaps = 10/282 (3%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           ++ + P++ +Y  LI   C+   + +A D  ++MV+  L+P+  T N ++HA     + +
Sbjct: 289 EIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMD 348

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               I   +    L P+S T+  +I+   +  +   A++L D++    + PT   Y +++
Sbjct: 349 EADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLI 408

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE-----DIIKYYEQLKSA 177
               ++  ++ A  + +++ +  + PD   F+ LI   C+N        ++K  +Q+K  
Sbjct: 409 YVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVV 468

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDA 236
             ++T   F  L+      G+ E AR+++ + +   +K      + L+S  +  G   DA
Sbjct: 469 PDEVT---FNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDA 525

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
             V +E+   G N       ALI+ L    E +   QLL+E+
Sbjct: 526 FRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEM 567



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 105/249 (42%), Gaps = 12/249 (4%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y  LI   C+L +   A +  + M    ++P     N +L    +S        +Y  + 
Sbjct: 124 YDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMF 183

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
              +K +  TF  MI++  K      A   +  ++ + + P    YN I+ GY  +  V+
Sbjct: 184 RMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVE 243

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALI 190
           GA M+   M+   VKPDS T+   I     E   E+     E++K  G + T   +  LI
Sbjct: 244 GARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLI 303

Query: 191 NAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA 246
           + Y   G  E A     ++V +  +P  S     + L+ AL    +  +A  + +E+ E 
Sbjct: 304 DGYCNKGNLEMAFDYRDKMVREGLMPTVS---TYNMLIHALFLDCKMDEADGIIKEMSEK 360

Query: 247 GCNLEPRAV 255
           G  L P +V
Sbjct: 361 G--LVPDSV 367



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 2/160 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           I P    +  LI   C    +  A  ++++M Q ++VP   T N+++   C E  +    
Sbjct: 432 IFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREG-KVEAA 490

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           R +   +    +KP+  ++ ++IS   K  D   A+ + D++  +   PT   YNA++ G
Sbjct: 491 RELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQG 550

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE 165
             + ++   A  +LKEM    + P+  T+  LI    N E
Sbjct: 551 LCKNEEGDHAEQLLKEMISKGITPNDNTYLSLIEGIGNVE 590


>gi|162460542|ref|NP_001105869.1| pentatricopeptide repeat protein [Zea mays]
 gi|95931777|gb|ABF57644.1| pentatricopeptide repeat protein [Zea mays]
          Length = 886

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 123/278 (44%), Gaps = 4/278 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I  ++ +Y  LI     L     A  + E M++  L P     N ++ A  +    +   
Sbjct: 457 IKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAI 516

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           RI+  +    ++P++ TFR +I       D   A+  LD ++     PT   YNA++ G 
Sbjct: 517 RIFERMQKERMQPSNRTFRPIIEGFAVAGDMKRAFDTLDLMRRSGCAPTVMTYNALIHGL 576

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITK 183
            RK  V+ A+ VL +M  A + P+  T++ ++   +   DI K   Y+ ++K +G ++  
Sbjct: 577 VRKHQVEKAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDV 636

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE-VKSALVSALASHGRTSDAIIVYEE 242
           Y++  L+ A    G  + A  V  +       R+  + + L+   A  G   +A  + ++
Sbjct: 637 YIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLLKQ 696

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           +KE G         + I      G++ R   +++E+ D
Sbjct: 697 MKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMAD 734



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/336 (20%), Positives = 146/336 (43%), Gaps = 43/336 (12%)

Query: 75  HNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQG 134
           H +K N++T+  +I+  + + DF +A+S+ +D+ +  L P  ++YN ++  + +  ++  
Sbjct: 455 HGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDR 514

Query: 135 ALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQL---KSAGGQITKYVFMALIN 191
           A+ + + M++  ++P ++TF  +I   +   D+ + ++ L   + +G   T   + ALI+
Sbjct: 515 AIRIFERMQKERMQPSNRTFRPIIEGFAVAGDMKRAFDTLDLMRRSGCAPTVMTYNALIH 574

Query: 192 AYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNL 250
                 + EKA  V+    I  +       + ++   A+ G    A   + +IKE+G  L
Sbjct: 575 GLVRKHQVEKAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKL 634

Query: 251 EPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQ 310
           +      L+      G +   + +  E+                   F+++   T +   
Sbjct: 635 DVYIYETLLRACCKSGRMQSALAVTREMS------------------FQKIPRNTFIYNI 676

Query: 311 LKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGA 370
           L D +                        DV    DLL+ +K++ G+PP+       + A
Sbjct: 677 LIDGW--------------------ARRGDVWEAADLLKQMKED-GIPPNIHTFTSYINA 715

Query: 371 CVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAF 406
           C  A D++RA  + +E  + GL  NV ++  + K +
Sbjct: 716 CCKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGW 751



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 74/357 (20%), Positives = 142/357 (39%), Gaps = 22/357 (6%)

Query: 80  NSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVL 139
           N   + ++I  + +  + D A  L+ +++E  +     +Y+++M GY   +D +  L+V 
Sbjct: 355 NGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVVQDEKKCLIVF 414

Query: 140 KEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTC 196
           + +++   KP   ++  LI+           I   ++++S G +     +  LIN +   
Sbjct: 415 ERLKECGFKPTIISYGCLINLYVKVGKVPKAIAISKEMESHGIKHNNKTYSMLINGFIHL 474

Query: 197 GEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255
            +F  A  +  D  +  ++    + + LV A    G    AI ++E +++       R  
Sbjct: 475 HDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQKERMQPSNRTF 534

Query: 256 IALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC-------RLILHCVRFKQLSSATDLL 308
             +IE     G++ R    L+ +        GC         LI   VR  Q+  A  +L
Sbjct: 535 RPIIEGFAVAGDMKRAFDTLDLMR-----RSGCAPTVMTYNALIHGLVRKHQVEKAVSVL 589

Query: 309 KQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLL 368
               DK     +A   H   I  +       D+    +    IK E GL       + LL
Sbjct: 590 ----DKMSIAGIAPNEHTYTIIMR-GYAASGDIGKAFEYFTKIK-ESGLKLDVYIYETLL 643

Query: 369 GACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKD 425
            AC  +  ++ A  + +E     +P N   Y  +   +   G+   A+ LL +M +D
Sbjct: 644 RACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLLKQMKED 700



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 67/353 (18%), Positives = 146/353 (41%), Gaps = 16/353 (4%)

Query: 78  KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALM 137
           KP+   F  M+    K  D   A +  ++++   + P A ++ +++  Y    D++GAL 
Sbjct: 248 KPSRREFGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVAGDMRGALS 307

Query: 138 VLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINAYT 194
            ++EM+   ++    T+S LI       D       +++ K+    +   ++  +I+A+ 
Sbjct: 308 CVEEMKSEGIEMTVVTYSILISGYGKTNDAQSADNLFKEAKTKLDNLNGIIYSNIIHAHC 367

Query: 195 TCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPR 253
             G  ++A ++V +  E  + +  +V  +++            +IV+E +KE  C  +P 
Sbjct: 368 QSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVVQDEKKCLIVFERLKE--CGFKPT 425

Query: 254 AVI--ALIEHLNSEGELNRLIQLLEEV--HDPDYWMDGCCRLILHCVRFKQLSSATDLLK 309
            +    LI      G++ + I + +E+  H   +       LI   +     ++A  + +
Sbjct: 426 IISYGCLINLYVKVGKVPKAIAISKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFE 485

Query: 310 QLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLG 369
            +       + A+     E FC++   D       + + + ++ E   P +R     + G
Sbjct: 486 DMIKSGLQPDRAIYNLLVEAFCKMGNMDR-----AIRIFERMQKERMQPSNRTFRPIIEG 540

Query: 370 ACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
             V A D+KRA         +G    V++Y  +    +     + A  +L KM
Sbjct: 541 FAV-AGDMKRAFDTLDLMRRSGCAPTVMTYNALIHGLVRKHQVEKAVSVLDKM 592



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 73/163 (44%), Gaps = 16/163 (9%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS 86
           V  A D+++QM +  + P+  T  S ++AC ++ +      +   +    LKPN +TF +
Sbjct: 687 VWEAADLLKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTT 746

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV------QGALMVLK 140
           +I    ++   D A    +++K   L P  + Y+ ++     +  V       G   V +
Sbjct: 747 LIKGWARVSLPDRALKCFEEMKSAGLKPDEAAYHCLVTSLLSRATVMEGSTYTGIFSVCR 806

Query: 141 EMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK 183
           EM + ++  D +T    +H         K+  +++  GG +T+
Sbjct: 807 EMFENDLTVDLRT---AVHWS-------KWLHKIERTGGALTE 839



 Score = 45.1 bits (105), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 66/145 (45%), Gaps = 3/145 (2%)

Query: 51  SILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEM 110
           ++L AC +S        +   +    +  N+  +  +I    +  D   A  LL  +KE 
Sbjct: 641 TLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLLKQMKED 700

Query: 111 NLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDI 167
            + P    + + +    +  D+Q A  V++EM    +KP+ +TF+ LI   +     +  
Sbjct: 701 GIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWARVSLPDRA 760

Query: 168 IKYYEQLKSAGGQITKYVFMALINA 192
           +K +E++KSAG +  +  +  L+ +
Sbjct: 761 LKCFEEMKSAGLKPDEAAYHCLVTS 785


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 140/312 (44%), Gaps = 6/312 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P    +  L     DL  +  A     +M +  ++P   + N +LH   +S +  L    
Sbjct: 179 PGFGVFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLALSF 238

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    L P+  T+  +I    +  D ++A SL +++K   L P    YN+++ GY +
Sbjct: 239 FKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGK 298

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQL---KSAGGQITKYV 185
              + GA+ V +EM+ A  +PD  T++ LI+     E I + +E L   K  G Q     
Sbjct: 299 VGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVT 358

Query: 186 FMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +  LI+A+   G   +A +  +D   + ++      ++L+ A    G  ++A  +  E++
Sbjct: 359 YSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQ 418

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDG--CCRLILHCVRFKQLS 302
           +AG NL      AL++ L  +G +    +L   +    + ++      L    ++ K + 
Sbjct: 419 QAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMME 478

Query: 303 SATDLLKQLKDK 314
            A D+L+++  K
Sbjct: 479 KAMDILEEMNKK 490



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 127/313 (40%), Gaps = 43/313 (13%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  LI   C   ++  A + +  M Q  L P+  T ++++ A  ++       + 
Sbjct: 319 PDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKF 378

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAY-------------------SLLDDLKE 109
           +  +    L+PN  T+ S+I  N KI D + A+                   +LLD L E
Sbjct: 379 FVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCE 438

Query: 110 MNLMPTA----------------SMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQT 153
              M  A                 +Y ++  GY + K ++ A+ +L+EM + N+KPD   
Sbjct: 439 DGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLL 498

Query: 154 FSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAE 210
           +   I     +   ED +    ++   G     Y++  LI+AY   G+  +A  ++ + +
Sbjct: 499 YGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQ 558

Query: 211 -IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGE 267
            + +K        L+  L   G    A+  ++ +   G  L+P  +I  ALI+ L     
Sbjct: 559 DLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNG--LQPNIMIYTALIDGLCKNDC 616

Query: 268 LNRLIQLLEEVHD 280
           L     L  E+ D
Sbjct: 617 LEEAKNLFNEMLD 629



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 128/294 (43%), Gaps = 12/294 (4%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  + P   S  +L+       K  +AL   + MV   L PS  T N ++       +  
Sbjct: 209 KFRVLPKVRSCNELLHRLSKSSKGGLALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLE 268

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             R ++  +    L+P+  T+ S+I    K+     A S+ +++K+    P    YN+++
Sbjct: 269 AARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLI 328

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQ 180
             + + + +  A   L  M+Q  ++P+  T+S LI        ++   K++  +   G Q
Sbjct: 329 NCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQ 388

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEI---PVKSRSEVKSALVSALASHGRTSDAI 237
             ++ + +LI+A    G+  +A +  L++E+    V       +AL+  L   GR  +A 
Sbjct: 389 PNEFTYTSLIDANCKIGDLNEAFK--LESEMQQAGVNLNIVTYTALLDGLCEDGRMREAE 446

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDYWMDG 287
            ++  + +AG  L  +   +L         + + + +LEE++     PD  + G
Sbjct: 447 ELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYG 500



 Score = 45.1 bits (105), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 61/290 (21%), Positives = 114/290 (39%), Gaps = 47/290 (16%)

Query: 141 EMEQANVKPDSQTFSYLIHNCSNEED---IIKYYEQLKSAGGQITKYVFMALINAYTTCG 197
           +M +  V P  ++ + L+H  S        + +++ +  AG   + + +  +I      G
Sbjct: 206 KMNKFRVLPKVRSCNELLHRLSKSSKGGLALSFFKDMVVAGLSPSVFTYNMVIGCLAREG 265

Query: 198 EFEKARQVVLDAEIPVKS-RSEVKS--ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRA 254
           + E AR   L  E+  K  R ++ +  +L+      G  + A+ V+EE+K+AGC  EP  
Sbjct: 266 DLEAARS--LFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGC--EPD- 320

Query: 255 VIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDK 314
           VI     +N   +  R+ Q  E                LH ++ + L         L D 
Sbjct: 321 VITYNSLINCFCKFERIPQAFE---------------YLHGMKQRGLQPNVVTYSTLIDA 365

Query: 315 FKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNA 374
           F    M +E +                +  +D+++     +GL P+      L+ A    
Sbjct: 366 FCKAGMLLEAN----------------KFFVDMIR-----VGLQPNEFTYTSLIDANCKI 404

Query: 375 RDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424
            DL  A  +  E + AG+  N+++Y  +       G  + A +L   + K
Sbjct: 405 GDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLK 454


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 161/374 (43%), Gaps = 13/374 (3%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +I P S SY  LI       K++ A  +  +M+   + PS  T N ++H    +Y  +  
Sbjct: 180 DIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEA 239

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             ++  +     +P+  TF  +I  + K    D A+ LL  + +   +P    Y+ +++G
Sbjct: 240 LELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISG 299

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK---SAGGQIT 182
                 V  A  +L++M +   KP   T + LIH       I +  E L    S+G    
Sbjct: 300 LCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPD 359

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYE 241
              +  L++ +   G+ E+AR+++ D      + + V  +ALVS L    R  +A  V+ 
Sbjct: 360 VVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFA 419

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDYWMDGCCRLILHCVR 297
           ++K +GC        ALI    S G+++  ++L  E+      PD+ + G   L     +
Sbjct: 420 QMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYG--TLAAELCK 477

Query: 298 FKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGL 357
             + + A ++L++ ++  + +    E +    F      D   +++ L  ++ +     L
Sbjct: 478 SGRSARALEILREGRESLRSEAWGDEVYR---FAVDGLLDAGKMEMALGFVRDMVRGGQL 534

Query: 358 PPSRKCLDFLLGAC 371
           P   +C   + G C
Sbjct: 535 PAPERCASLVAGLC 548



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/282 (20%), Positives = 118/282 (41%), Gaps = 6/282 (2%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
            P   +Y  LI+  C + +V  A  ++E MV+ +  P+  T N+++H   ++      R 
Sbjct: 287 VPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEARE 346

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +   +      P+  T+ +++  + +    + A  LL D+    L P    Y A+++G  
Sbjct: 347 VLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLC 406

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE--DIIKYYEQLKSAGGQITKY 184
           +   +  A  V  +M+ +   P+  T++ LI   CS  +    +K + ++  AG      
Sbjct: 407 KANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHV 466

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRS---EVKSALVSALASHGRTSDAIIVYE 241
           V+  L       G   +A +++ +    ++S +   EV    V  L   G+   A+    
Sbjct: 467 VYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLDAGKMEMALGFVR 526

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY 283
           ++   G    P    +L+  L   G+      +LEE+ D  Y
Sbjct: 527 DMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEIMDLAY 568



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 109/277 (39%), Gaps = 21/277 (7%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K +  P+  +   LI   C   ++  A +V++ MV     P   T N+++H    + +  
Sbjct: 318 KRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTE 377

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             R +   +    L PN  T+ +++S   K      A  +   +K     P    Y A++
Sbjct: 378 RARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALI 437

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA------ 177
            G+     V G L +  EM  A + PD   +  L           +  E L+        
Sbjct: 438 LGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRS 497

Query: 178 ---GGQITKYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASH 230
              G ++ ++    L++A    G+ E A    R +V   ++P   R    ++LV+ L   
Sbjct: 498 EAWGDEVYRFAVDGLLDA----GKMEMALGFVRDMVRGGQLPAPERC---ASLVAGLCKS 550

Query: 231 GRTSDAIIVYEEIKEAGCNLEPRAVIA-LIEHLNSEG 266
           G+  +A  V EEI +     + R   A  +E +  +G
Sbjct: 551 GQGGEARAVLEEIMDLAYGGKARGKAAKFVEEMVGKG 587



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 84/458 (18%), Positives = 182/458 (39%), Gaps = 49/458 (10%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           ++P S SY  LI       K++ A D+ ++++   + PST    S++H    +  F+  R
Sbjct: 6   VSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAR 65

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +      P+  T+  +I  + K    + A  L+  + E   +P    YN +M G 
Sbjct: 66  ELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGL 125

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITK 183
            +   V+ AL++  EME+    P+ ++ + +I     +  I    + + ++++       
Sbjct: 126 CKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDS 185

Query: 184 YVFMALINAYTTCGEFEKARQV---VLDAEIPVKSRSEVKSALVSALASHGRT-----SD 235
           + +  LI+     G+  +A ++   +LD+ I         SA+   +  HG        +
Sbjct: 186 WSYGILIDGLAKAGKLNEAYKLFRRMLDSGI-------TPSAVTYNVVIHGMCLAYTLDE 238

Query: 236 AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLIL 293
           A+ +++ ++  GC         LI+     G+++   +LL+ + D  +  D      LI 
Sbjct: 239 ALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLIS 298

Query: 294 HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQ--------------IATTDPP 339
                 ++  A  LL+ +  +     +  +       C+              +++   P
Sbjct: 299 GLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSP 358

Query: 340 DVQIGLDLL-------------QFIKDEL--GLPPSRKCLDFLLGACVNARDLKRAHLIW 384
           DV     L+             + + D +  GL P+      L+     A  L  A  ++
Sbjct: 359 DVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVF 418

Query: 385 KEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
            + +++G   N+ +Y  +   F ++G      KL  +M
Sbjct: 419 AQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEM 456


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 98/407 (24%), Positives = 175/407 (42%), Gaps = 32/407 (7%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A +   QM    +V +  T  S+L+AC  S        I+  I       + +   S+IS
Sbjct: 369 AFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLIS 428

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  +  D   A  L + + + +L+     +NAI+AGY R++D   A+ + K+M+   VKP
Sbjct: 429 MYARCGDLPRARELFNTMPKRDLIS----WNAIIAGYARREDRGEAMKLYKQMQSEGVKP 484

Query: 150 DSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
              TF +L+  C+N     D    +E +  +G +   ++  AL+N Y  CG   +A+ V 
Sbjct: 485 GRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVF 544

Query: 207 LDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI---ALIEHL 262
                  ++R  +  +++++  A HG    A  ++ E+K+ G  LEP  +     L+   
Sbjct: 545 EG----TRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEG--LEPDKITFASVLVGCK 598

Query: 263 NSEG-ELNRLIQLL--EEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDE 319
           N E  EL R I +L  E     D  +     LI   +R   L  A ++   L+ +     
Sbjct: 599 NPEALELGRQIHMLIIESGLQLDVNLGNA--LINMYIRCGSLQDAYEVFHSLRHRNVMSW 656

Query: 320 MAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKR 379
            AM   F+         D  + +   +L   ++++ G  P +     +L AC+++  L  
Sbjct: 657 TAMIGGFA---------DQGEDRKAFELFWQMQND-GFKPVKSTFSSILKACMSSACLDE 706

Query: 380 AHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDD 426
              +     N+G   +      +  A+  SG+   A K+  KMP  D
Sbjct: 707 GKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRD 753



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 128/311 (41%), Gaps = 25/311 (8%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +I    D  +   A ++  QM      P   T +SIL AC  S   +  +++   I
Sbjct: 655 SWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHI 714

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
            +   + ++    ++IS   K      A  + D +   ++M     +N ++AGY +    
Sbjct: 715 LNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMS----WNKMIAGYAQNGLG 770

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK-------YV 185
             AL    +M++  V  +  +F  +++ CS+        E+ K    +I K        V
Sbjct: 771 GTALQFAYQMQEQGVVLNKFSFVSILNACSS----FSALEEGKRVHAEIVKRKMQGDVRV 826

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
             ALI+ Y  CG  E+A++V  +     +      +A+++A A HG  S A+  +  + +
Sbjct: 827 GAALISMYAKCGSLEEAQEVFDNF---TEKNVVTWNAMINAYAQHGLASKALDFFNCMDK 883

Query: 246 AGCNLEPRAVIALIEHLNSEG---ELNRLIQLLEEVH--DPDYWMDGCCRLILHCVRFKQ 300
            G   +     +++   N  G   E NR+   LE  H   P     GC  L+    R  +
Sbjct: 884 EGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGC--LVGLLGRAGR 941

Query: 301 LSSATDLLKQL 311
              A  L+ Q+
Sbjct: 942 FQEAETLINQM 952



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 151/373 (40%), Gaps = 26/373 (6%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A  + E+M     +PS  T  SIL AC    E    ++I+  I     + +     S+++
Sbjct: 167 AFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLN 226

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K +D  SA  +   +   +++     YN ++  Y +K  V+  + +  +M    + P
Sbjct: 227 MYGKCEDLPSARQVFSGIYRRDVVS----YNTMLGLYAQKAYVEECIGLFGQMSSEGIPP 282

Query: 150 DSQTFSYLIHNCSNEE--DIIKYYEQLKSAGGQITKY-VFMALINAYTTCGEFEKARQVV 206
           D  T+  L+   +     D  K   +L    G  +   V  AL   +  CG+   A+Q +
Sbjct: 283 DKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQAL 342

Query: 207 LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
              E        V +AL++ALA HG   +A   Y +++  G  +     ++++   ++  
Sbjct: 343 ---EAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSK 399

Query: 267 EL--NRLI--QLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAM 322
            L    LI   + E  H  D  +     LI    R   L  A +L   +    K D ++ 
Sbjct: 400 ALGAGELIHSHISEVGHSSDVQIGNS--LISMYARCGDLPRARELFNTMP---KRDLIS- 453

Query: 323 EYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHL 382
              ++ I    A  +  D    + L + ++ E G+ P R     LL AC N+       +
Sbjct: 454 ---WNAIIAGYARRE--DRGEAMKLYKQMQSE-GVKPGRVTFLHLLSACTNSSAYSDGKM 507

Query: 383 IWKEYENAGLPYN 395
           I ++   +G+  N
Sbjct: 508 IHEDILRSGIKSN 520



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 10/228 (4%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+ K+I           AL    QM +  +V +  +  SIL+AC         +R++  I
Sbjct: 756 SWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEI 815

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               ++ +     ++IS+  K    + A  + D+  E N++     +NA++  Y +    
Sbjct: 816 VKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVV----TWNAMINAYAQHGLA 871

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGG-QITKYVFMA 188
             AL     M++  +KPD  TF+ ++  C++   ++   + +  L+S  G   T   +  
Sbjct: 872 SKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGC 931

Query: 189 LINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDA 236
           L+      G F++A  ++   ++P    + V   L+ A   HG  + A
Sbjct: 932 LVGLLGRAGRFQEAETLI--NQMPFPPDAAVWETLLGACRIHGNVALA 977


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 85/379 (22%), Positives = 165/379 (43%), Gaps = 14/379 (3%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M AK +I P S SY  LI       K++ A  + ++M+   + PS  T N ++H    +Y
Sbjct: 176 MEAK-DIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAY 234

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
             +    ++  +     +P+  TF  +I  + K    D A+ LL  + +   +P    Y+
Sbjct: 235 TLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYS 294

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK---SA 177
            +++G      V  A  +L++M +   KP   T + LIH       I +  E L    S+
Sbjct: 295 TLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSS 354

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDA 236
           G       +  L++ +   G+ E+AR+++ D      + + V  +ALVS L    R  +A
Sbjct: 355 GQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEA 414

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDYWMDGCCRLI 292
             V+ ++K +GC        ALI    S G+++  ++L  E+      PD+ + G   L 
Sbjct: 415 CGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYG--TLA 472

Query: 293 LHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIK 352
               +  + + A ++L++ ++  + +    E +    F      +   +++ L  ++ + 
Sbjct: 473 AELCKSGRSARALEILREGRESLRSEAWGDEVYR---FAVDGLLEAGKMEMALGFVRDMV 529

Query: 353 DELGLPPSRKCLDFLLGAC 371
               LP   +C   + G C
Sbjct: 530 RGGQLPAPERCASLVAGLC 548



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/282 (20%), Positives = 118/282 (41%), Gaps = 6/282 (2%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
            P   +Y  LI+  C + +V  A  ++E MV+ +  P+  T N+++H   ++      R 
Sbjct: 287 VPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEARE 346

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +   +      P+  T+ +++  + +    + A  LL D+    L P    Y A+++G  
Sbjct: 347 VLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLC 406

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE--DIIKYYEQLKSAGGQITKY 184
           +   +  A  V  +M+ +   P+  T++ LI   CS  +    +K + ++  AG      
Sbjct: 407 KANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHV 466

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRS---EVKSALVSALASHGRTSDAIIVYE 241
           V+  L       G   +A +++ +    ++S +   EV    V  L   G+   A+    
Sbjct: 467 VYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVR 526

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY 283
           ++   G    P    +L+  L   G+      +LEE+ D  Y
Sbjct: 527 DMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEIMDLAY 568



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 86/458 (18%), Positives = 181/458 (39%), Gaps = 49/458 (10%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           ++P S SY  LI       K++ A ++ ++++   + PST    S++H    +  F+  R
Sbjct: 6   VSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAR 65

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +      P+  T+  MI  + K    + A  L+  + E   +P    YN +M G 
Sbjct: 66  ELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGL 125

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITK 183
            +   V+ AL++  EME+    P+ ++ + +I     +  I    + + ++++       
Sbjct: 126 CKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDS 185

Query: 184 YVFMALINAYTTCGEFEKAR---QVVLDAEIPVKSRSEVKSALVSALASHGRT-----SD 235
           + +  LI+     G+  +A    Q +LD+ I         SA+   +  HG        +
Sbjct: 186 WSYGILIDGLAKAGKLNEAYKLFQRMLDSGI-------TPSAVTYNVVIHGMCLAYTLDE 238

Query: 236 AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLIL 293
           A+ +++ ++  GC         LI+     G+L+   +LL+ + D  +  D      LI 
Sbjct: 239 ALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLIS 298

Query: 294 HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQ--------------IATTDPP 339
                 ++  A  LL+ +  +     +  +       C+              +++   P
Sbjct: 299 GLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSP 358

Query: 340 DVQIGLDLL-------------QFIKDEL--GLPPSRKCLDFLLGACVNARDLKRAHLIW 384
           DV     L+             + + D +  GL P+      L+     A  L  A  ++
Sbjct: 359 DVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVF 418

Query: 385 KEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
            + +++G   N+ +Y  +   F ++G      KL  +M
Sbjct: 419 AQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEM 456


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 147/326 (45%), Gaps = 24/326 (7%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L+I  +  ++  +I   C   K+  A D +  M    + P+  T N+++H         
Sbjct: 229 RLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVE 288

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             R +  ++ +  ++P+S T+ S+IS   K    + A  +L+ +KE+ L+PTA  YN ++
Sbjct: 289 GARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLI 348

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAG--GQI 181
            GY  K D+  A     EM +  + P   T++ LIH    E  + +    +K  G  G +
Sbjct: 349 DGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIV 408

Query: 182 TKYV-FMALINAYTTCGEFEKARQVVLDAEIPVKSRSE---VKSALVSALASHGRTSDAI 237
              + +  LIN Y  CG  +KA    L  E+  K         ++L+  L+   R   A 
Sbjct: 409 PDSITYNILINGYCRCGNAKKAFN--LHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAAD 466

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PD-----YWMDGC 288
            ++E+I   G + +     ALI+   + G L+R   LL+E+      PD       M G 
Sbjct: 467 DLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGR 526

Query: 289 CRLILHCVRFKQLSSATDLLKQLKDK 314
           C       R  ++  A +LLK++K +
Sbjct: 527 C-------REGKVEEARELLKEMKRR 545



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 112/247 (45%), Gaps = 10/247 (4%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           T SS  +  LI   C+L +   A +  + M +  +VP  ET N++L    +  +   V  
Sbjct: 163 TKSSIVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWV 222

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +Y  +    +K    TF  MI++  K      A   +  ++ + + P    YN ++ GY 
Sbjct: 223 LYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYC 282

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKY 184
            +  V+GA MVL  M+   V+PDS T+  LI   C     E+     E++K  G   T  
Sbjct: 283 SRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAV 342

Query: 185 VFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
            +  LI+ Y   G+  KA     ++V  A +P  S   +   L+ AL   G+  +A  + 
Sbjct: 343 TYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNL---LIHALFLEGKMDEADGMI 399

Query: 241 EEIKEAG 247
           +++ ++G
Sbjct: 400 KDMGDSG 406



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 105/233 (45%), Gaps = 5/233 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P S +Y  LI   C       A ++ ++M+   + P+  T  S+++   +        
Sbjct: 407 IVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAAD 466

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  I      P+   F ++I  +    + D A++LL ++ + N++P    YN +M G 
Sbjct: 467 DLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGR 526

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY---EQLKSAGGQITK 183
            R+  V+ A  +LKEM++  ++PD  +++ LI   S   DI   +   +++ S G   T 
Sbjct: 527 CREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTL 586

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDA 236
             + ALI       + + A +++   E+  K  +   S   S +   G+  D+
Sbjct: 587 LTYNALIQGLCKNQQGDLAEELL--KEMVSKGITPDDSTYFSLIEGIGKVDDS 637


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 84/415 (20%), Positives = 167/415 (40%), Gaps = 71/415 (17%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  L+   C L  V  A DVV++M++G   P+  T NS++    +    +  R++
Sbjct: 212 PNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKL 271

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
             ++    ++PN  T+ ++I    K + F  A  +L+++K   + P A  Y+A++ G  +
Sbjct: 272 LGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCK 331

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMA 188
              ++ A  +L+ M  +   PD   +S +IH                             
Sbjct: 332 ADKIEEAEQMLRRMAGSGCTPDVVVYSSIIH----------------------------- 362

Query: 189 LINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAG 247
              A+   G+  +A++ + +     KS   V  + ++  L   G+ ++A ++ E+++E+G
Sbjct: 363 ---AFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESG 419

Query: 248 CNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDL 307
                                     +L +V      ++G C       +   L  A  L
Sbjct: 420 -------------------------DVLPDVVTYSTVINGLC-------KSDMLVEAQKL 447

Query: 308 LKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFL 367
           L ++     + ++       +  C+    +  +      LLQ +K   G  P+      L
Sbjct: 448 LDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEY-----LLQGMK-RAGCAPNVVTYTTL 501

Query: 368 LGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           +     AR +  A  + +E  NAG P N+++Y  M      SG  K A +L+ +M
Sbjct: 502 ISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRM 556



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/277 (20%), Positives = 119/277 (42%), Gaps = 5/277 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  LI   C   K   A +V+E+M    + P   T ++++H   ++ +     ++
Sbjct: 282 PNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQM 341

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +      P+   + S+I    K      A   L ++++    P    YN ++ G  +
Sbjct: 342 LRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCK 401

Query: 129 KKDVQGALMVLKEM-EQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKY 184
              +  A ++L++M E  +V PD  T+S +I+     + ++   K  +++  AG      
Sbjct: 402 LGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVV 461

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEI 243
            +  +I+    CG  E+A  ++   +    + + V  + L+S L    +  +A  V EE+
Sbjct: 462 TYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEM 521

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           + AGC         ++  L   G +    QL++ + D
Sbjct: 522 RNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKD 558



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 73/154 (47%), Gaps = 1/154 (0%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQ-GELVPSTETINSILHACEESYEFNLVR 66
           +P   +Y  +I   C L K+  A  ++EQM + G+++P   T +++++   +S      +
Sbjct: 386 SPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQ 445

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           ++   +C     P+  T+ ++I    K    + A  LL  +K     P    Y  +++G 
Sbjct: 446 KLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGL 505

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160
            + + V  A  V++EM  A   P+  T++ +++ 
Sbjct: 506 CKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNG 539



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 60/124 (48%)

Query: 83  TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM 142
           ++ S++ + V+ K    A  L       +  P    YN +++G+    D+  AL +L+EM
Sbjct: 79  SWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEM 138

Query: 143 EQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
           + A   PD+ T + +I   +N  D+    + L+S G       + ALI A+    + E+A
Sbjct: 139 KSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCDPNVVTYTALIAAFARAKKLEEA 198

Query: 203 RQVV 206
            +++
Sbjct: 199 MKLL 202


>gi|357166784|ref|XP_003580849.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Brachypodium distachyon]
          Length = 904

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 125/278 (44%), Gaps = 4/278 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I  ++ +Y  LI+    L     A  + E+M++  L P     N ++ A  +    +   
Sbjct: 475 IKHNNKTYSMLISGFIHLHDFANAFSIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAI 534

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           RI   +    ++P++  FR +I       D   A ++LD ++     PT   YNA++ G 
Sbjct: 535 RILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALNILDLMRRSGCAPTVMTYNALIHGL 594

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITK 183
            +K  V+ A+ VL +M  A + P+  T++ ++   +   DI K   Y+ ++K  G ++  
Sbjct: 595 IKKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAANGDIGKAFEYFTKIKEGGLKLDV 654

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE-VKSALVSALASHGRTSDAIIVYEE 242
           Y++  L+ A    G  + A  V  +      +R+  V + L+   A  G   +A  + ++
Sbjct: 655 YIYETLLRACCKSGRMQSALAVTREMSTQKIARNTFVYNILIDGWARRGDVWEAADLMKQ 714

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           +KE G         + I      G++ R  +++EE+ D
Sbjct: 715 MKEDGVPPNIHTYTSYINACCKAGDMQRAQKVIEEMAD 752



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/338 (19%), Positives = 141/338 (41%), Gaps = 47/338 (13%)

Query: 75  HNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQG 134
           + +K N++T+  +IS  + + DF +A+S+ +++ +  L P  ++YN ++  + +  ++  
Sbjct: 473 YGIKHNNKTYSMLISGFIHLHDFANAFSIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDR 532

Query: 135 ALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALIN 191
           A+ +L++M++  ++P ++ F  +I   +   D+   +   + ++ +G   T   + ALI+
Sbjct: 533 AIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALNILDLMRRSGCAPTVMTYNALIH 592

Query: 192 AYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNL 250
                 + E+A  V+    I  +       + ++   A++G    A   + +IKE G  L
Sbjct: 593 GLIKKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAANGDIGKAFEYFTKIKEGGLKL 652

Query: 251 EPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL--HCVRFKQLSSATDLL 308
           +      L+      G +   + +  E+       +     IL     R   +  A DL+
Sbjct: 653 DVYIYETLLRACCKSGRMQSALAVTREMSTQKIARNTFVYNILIDGWARRGDVWEAADLM 712

Query: 309 KQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLL 368
           KQ+K                                         E G+PP+       +
Sbjct: 713 KQMK-----------------------------------------EDGVPPNIHTYTSYI 731

Query: 369 GACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAF 406
            AC  A D++RA  + +E  + GL  N+ +Y  + K +
Sbjct: 732 NACCKAGDMQRAQKVIEEMADVGLKPNLKTYTTLIKGW 769



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/367 (19%), Positives = 142/367 (38%), Gaps = 49/367 (13%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  + P  A Y  LI   C +  +  A+ ++E+M +  + PS      I+     + +  
Sbjct: 507 KSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMK 566

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               I  ++      P   T+ ++I   +K    + A S+L+ +    + P    Y  IM
Sbjct: 567 RALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKMSIAGITPNEHTYTIIM 626

Query: 124 AGYFRKKDV-----------------------------------QGALMVLKEMEQANVK 148
            GY    D+                                   Q AL V +EM    + 
Sbjct: 627 RGYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSTQKIA 686

Query: 149 PDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
            ++  ++ LI   +   D+ +  +   Q+K  G     + + + INA    G+ ++A++V
Sbjct: 687 RNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQKV 746

Query: 206 VLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
           + + A++ +K   +  + L+   A       A+  +EE+K AG   +  A   L+  L S
Sbjct: 747 IEEMADVGLKPNLKTYTTLIKGWAKASLPDRALKSFEEMKLAGLKPDEAAYHCLVTSLLS 806

Query: 265 EGEL------NRLIQLLEEVHDPDYWMDGCCRLILHCVRF--KQLSSATDLLKQLKDKFK 316
              +        ++ +  E+ + D  +D   R  +H  R+  K   +   L + L+  F 
Sbjct: 807 RATVMEGSTYTGILSICREMFENDLTVD--MRTAVHWSRWLHKIERTGGALTEALQRIFP 864

Query: 317 DDEMAME 323
            D  ++E
Sbjct: 865 PDWNSLE 871



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 74/364 (20%), Positives = 155/364 (42%), Gaps = 38/364 (10%)

Query: 78  KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALM 137
           KP+   F  MI    K  D   A +  ++++   + P A ++ +++  Y   +D++G L 
Sbjct: 266 KPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGVLS 325

Query: 138 VLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYT 194
            ++EM+   ++    T+S +I      ++ +     +++ K+  G +   ++  +I+A+ 
Sbjct: 326 CVEEMKAEGIELTIVTYSIIIAGFAKINDAQSADNLFKEAKAKLGDLNGIIYSNIIHAHC 385

Query: 195 TCGEFEKARQVVLDAEIPVKSRSEVKSALVSALAS--HGRT-----SDAIIVYEEIKEAG 247
             G  ++A ++V + E       +   A + A  S  HG T        +IV+E +KE  
Sbjct: 386 QSGNMDRAEELVREME------EDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKE-- 437

Query: 248 CNLEPRAVI--ALIEHLNSEGELNRLIQLLEEV-------HDPDYWMDGCCRLILHCVRF 298
           C   P  +    LI      G++ + I + +E+       ++  Y M     LI   +  
Sbjct: 438 CCFTPSIISYGCLINLYIKIGKVTKAIAISKEMESYGIKHNNKTYSM-----LISGFIHL 492

Query: 299 KQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLP 358
              ++A  + +++       + A+     E FC++   D       + +L+ ++ E   P
Sbjct: 493 HDFANAFSIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDR-----AIRILEKMQKERMQP 547

Query: 359 PSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKL 418
            +R     + G  V A D+KRA  I      +G    V++Y  +    +     + A  +
Sbjct: 548 SNRAFRPIIEGFAV-AGDMKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSV 606

Query: 419 LSKM 422
           L+KM
Sbjct: 607 LNKM 610



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 73/388 (18%), Positives = 148/388 (38%), Gaps = 82/388 (21%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
            ++PN+  F S++      +D     S ++++K   +  T   Y+ I+AG+ +  D Q A
Sbjct: 299 GIEPNAFVFTSLVHAYAVARDMRGVLSCVEEMKAEGIELTIVTYSIIIAGFAKINDAQSA 358

Query: 136 LMVLK-----------------------------------EMEQANVKPDSQTFSYLIHN 160
             + K                                   EME+  +      +  ++H 
Sbjct: 359 DNLFKEAKAKLGDLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDAYHSMMHG 418

Query: 161 CS---NEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAE-IPVKSR 216
            +   +E+  +  +E+LK      +   +  LIN Y   G+  KA  +  + E   +K  
Sbjct: 419 YTIIQDEKKCLIVFERLKECCFTPSIISYGCLINLYIKIGKVTKAIAISKEMESYGIKHN 478

Query: 217 SEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQL 274
           ++  S L+S        ++A  ++EE+ ++G  L+P   I   LIE     G ++R I++
Sbjct: 479 NKTYSMLISGFIHLHDFANAFSIFEEMLKSG--LQPDRAIYNLLIEAFCKMGNMDRAIRI 536

Query: 275 LEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIA 334
           LE                                K  K++ +    A    F  I    A
Sbjct: 537 LE--------------------------------KMQKERMQPSNRA----FRPIIEGFA 560

Query: 335 TTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPY 394
                D++  L++L  ++   G  P+    + L+   +    ++RA  +  +   AG+  
Sbjct: 561 VAG--DMKRALNILDLMRRS-GCAPTVMTYNALIHGLIKKNQVERAVSVLNKMSIAGITP 617

Query: 395 NVLSYLWMYKAFLASGNRKSASKLLSKM 422
           N  +Y  + + + A+G+   A +  +K+
Sbjct: 618 NEHTYTIIMRGYAANGDIGKAFEYFTKI 645


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 124/266 (46%), Gaps = 13/266 (4%)

Query: 11  SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYP 70
           + S+  +I       +   AL   ++M +  + P+  T+ ++L AC +S    L   +  
Sbjct: 229 AVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRS 288

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
            I  H L  N     ++I +  K  D D A  L + + E +++     +N ++ GY    
Sbjct: 289 WIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIIS----WNVMIGGYSHMN 344

Query: 131 DVQGALMVLKEMEQANVKPDSQTFSYLIHNCS--NEEDIIKYYEQL--KSAGGQITKYVF 186
             + AL + ++M+Q+NV+P+  TF  ++  C+     D+ K+      K   G     ++
Sbjct: 345 SYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLW 404

Query: 187 MALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA 246
            +LI+ Y  CG  E A+QV   A +  KS     +A++S LA HG  + A+ ++ ++++ 
Sbjct: 405 TSLIDMYAKCGNIEAAKQVF--AGMKPKSLGSW-NAMISGLAMHGHANMALELFRQMRDE 461

Query: 247 GCNLEPRAVIALIEHLNSEG--ELNR 270
           G   +    + ++   +  G  EL R
Sbjct: 462 GFEPDDITFVGVLSACSHAGLVELGR 487



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 9/130 (6%)

Query: 83  TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPT--ASMYNAIMAGYFRKKDVQGALMVLK 140
           + R  +S    I  +     L D  +    +P   A  +NA++AGY +    + AL   +
Sbjct: 194 SLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQ 253

Query: 141 EMEQANVKPDSQTFSYLIHNCSNEEDI-----IKYYEQLKSAGGQITKYVFMALINAYTT 195
           EM++ANV P+  T   ++  C+    +     ++ + +    G  +   +  ALI+ Y+ 
Sbjct: 254 EMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLR--LVNALIDMYSK 311

Query: 196 CGEFEKARQV 205
           CG+ +KAR +
Sbjct: 312 CGDLDKARDL 321



 Score = 42.4 bits (98), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 98/253 (38%), Gaps = 44/253 (17%)

Query: 51  SILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDS-AYSLLDDLKE 109
           ++L  C+    F  +++I+  I    L         +I     I  F + +Y+LL  L E
Sbjct: 37  TLLSTCKS---FQNLKQIHSQIIKTGLHNTQFALSKLIEF-CAISPFGNLSYALL--LFE 90

Query: 110 MNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN------ 163
               P   ++N ++ G        GA+     M    V+P+S TF +L+ +C+       
Sbjct: 91  SIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQE 150

Query: 164 -------------EED------IIKYYEQLKSAG--------GQITKYV-FMALINAYTT 195
                        E D      +I  Y Q    G          +   V F ALI  YT 
Sbjct: 151 GKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTL 210

Query: 196 CGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255
            G  + AR+  L  EIPV+      +A+++  A  GR  +A+  ++E+K A        +
Sbjct: 211 RGCLDDARR--LFEEIPVRDAVSW-NAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTM 267

Query: 256 IALIEHLNSEGEL 268
           + ++      G L
Sbjct: 268 VTVLSACAQSGSL 280


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 124/266 (46%), Gaps = 13/266 (4%)

Query: 11  SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYP 70
           + S+  +I       +   AL   ++M +  + P+  T+ ++L AC +S    L   +  
Sbjct: 229 AVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRS 288

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
            I  H L  N     ++I +  K  D D A  L + + E +++     +N ++ GY    
Sbjct: 289 WIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIIS----WNVMIGGYSHMN 344

Query: 131 DVQGALMVLKEMEQANVKPDSQTFSYLIHNCS--NEEDIIKYYEQL--KSAGGQITKYVF 186
             + AL + ++M+Q+NV+P+  TF  ++  C+     D+ K+      K   G     ++
Sbjct: 345 SYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLW 404

Query: 187 MALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA 246
            +LI+ Y  CG  E A+QV   A +  KS     +A++S LA HG  + A+ ++ ++++ 
Sbjct: 405 TSLIDMYAKCGNIEAAKQVF--AGMKPKSLGSW-NAMISGLAMHGHANMALELFRQMRDE 461

Query: 247 GCNLEPRAVIALIEHLNSEG--ELNR 270
           G   +    + ++   +  G  EL R
Sbjct: 462 GFEPDDITFVGVLSACSHAGLVELGR 487



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 9/130 (6%)

Query: 83  TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPT--ASMYNAIMAGYFRKKDVQGALMVLK 140
           + R  +S    I  +     L D  +    +P   A  +NA++AGY +    + AL   +
Sbjct: 194 SLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQ 253

Query: 141 EMEQANVKPDSQTFSYLIHNCSNEEDI-----IKYYEQLKSAGGQITKYVFMALINAYTT 195
           EM++ANV P+  T   ++  C+    +     ++ + +    G  +   +  ALI+ Y+ 
Sbjct: 254 EMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLR--LVNALIDMYSK 311

Query: 196 CGEFEKARQV 205
           CG+ +KAR +
Sbjct: 312 CGDLDKARDL 321



 Score = 42.0 bits (97), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 99/253 (39%), Gaps = 44/253 (17%)

Query: 51  SILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDS-AYSLLDDLKE 109
           ++L  C+    F  +++I+  I    L         +I     I  F + +Y+LL  L E
Sbjct: 37  TLLSTCKS---FQNLKQIHSQIIKTGLHNTQFALSKLIEF-CAISPFGNLSYALL--LFE 90

Query: 110 MNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN------ 163
               P   ++N ++ G        GA+     M    V+P+S TF +L+ +C+       
Sbjct: 91  SIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQE 150

Query: 164 -------------EED------IIKYYEQLKSAG--------GQITKYV-FMALINAYTT 195
                        E D      +I  Y Q    G          +   V F ALI  YT 
Sbjct: 151 GKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTL 210

Query: 196 CGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255
            G  + AR+  L  EIPV+  +   +A+++  A  GR  +A+  ++E+K A        +
Sbjct: 211 RGCLDDARR--LFEEIPVRD-AVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTM 267

Query: 256 IALIEHLNSEGEL 268
           + ++      G L
Sbjct: 268 VTVLSACAQSGSL 280


>gi|255628149|gb|ACU14419.1| unknown [Glycine max]
          Length = 97

 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 74/97 (76%)

Query: 218 EVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEE 277
           ++K  LVS LASHG+ S+A+++YEEIK++G  LE + V +LIEH +SEGEL+RL+ LL+E
Sbjct: 1   QIKGFLVSVLASHGKLSEALVIYEEIKQSGHKLEAKEVTSLIEHTHSEGELDRLLLLLKE 60

Query: 278 VHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDK 314
           + D  YW D CCR++L+C+  K LSSA +L   LKDK
Sbjct: 61  LDDTYYWNDACCRIVLYCIWNKHLSSAVELCNLLKDK 97


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 134/285 (47%), Gaps = 10/285 (3%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M  K    P+++SY +LI   C +     A+ ++  M++G   P+  T N I+    +S 
Sbjct: 425 MMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSG 484

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           + ++  R+  ++  +  +P+  ++  +IS   KI   + A  + +++ +  L P    Y 
Sbjct: 485 DTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYT 544

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH------NCSNEEDIIKYYEQL 174
           A+++GY + + +  A  +L+ M+++  +P+ QT++ LIH      N S  E++ K   + 
Sbjct: 545 ALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEE 604

Query: 175 KSAGGQIT-KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRT 233
           K +   +T   V   L N        E   ++V    +P        S+L+ AL   GR 
Sbjct: 605 KISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLP---NLHTYSSLIQALGQEGRV 661

Query: 234 SDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            +A  ++ E+K+ G   +    + +IE     G+++R    L E+
Sbjct: 662 EEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEM 706



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/327 (21%), Positives = 137/327 (41%), Gaps = 45/327 (13%)

Query: 28  HVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSM 87
            +A+ +  +M +  +VP+T T N++++   E+ E +    ++ M+  H   PN+ ++  +
Sbjct: 382 RMAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNEL 441

Query: 88  ISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANV 147
           I     I D + A S+L ++ +    PT   YN I+ GY    D   A+ VL+ M+    
Sbjct: 442 IRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGC 501

Query: 148 KPDSQTFSYLIHN----------------------CSNE---EDIIKYY----------- 171
           +PD  +++ LI                        C NE     +I  Y           
Sbjct: 502 QPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAAR 561

Query: 172 --EQLKSAGGQITKYVFMALINAYTTCGEFEKARQ---VVLDAEIPVKSRSEVKSALVSA 226
             E++K +G +     +  LI+  T    F  A +   V+L+ +I         S +++ 
Sbjct: 562 MLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKI--SPDVVTYSTVING 619

Query: 227 LASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
           L ++G    A+ ++ ++ + GC        +LI+ L  EG +    ++  E+       D
Sbjct: 620 LCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPD 679

Query: 287 GC--CRLILHCVRFKQLSSATDLLKQL 311
                ++I  CV   ++  A D L ++
Sbjct: 680 EVTYVKMIEVCVMSGKVDRAFDFLGEM 706



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 94/453 (20%), Positives = 183/453 (40%), Gaps = 72/453 (15%)

Query: 17  LITYSCDLLKVH------VALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYP 70
           L TY+  L++++        +D   Q+++  L P+    NS+++A  +         I  
Sbjct: 193 LFTYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVINALCKDGNVRDAESIIN 252

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
            +    +KP++ T+ SMI    + +D DSA+ + + + E    P A+ Y+ ++ G     
Sbjct: 253 KVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSG 312

Query: 131 DVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITKYVFM 187
            V  AL  + EM +  V P   TF+  I    +    ED  K +  +K  G +   Y + 
Sbjct: 313 RVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYT 372

Query: 188 ALIN----AYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
           +LI+    +    G F +  +   D  +P    +   +AL++ L  +     A+IV+  +
Sbjct: 373 SLISGQRVSRMAIGLFHRMSR---DGVVP---NTVTYNALMNVLMENMEIDSALIVFNMM 426

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSS 303
            + GC             L +    N LI+    + D +                K +S 
Sbjct: 427 GKHGC-------------LPNTSSYNELIRGYCTIGDTE----------------KAMSM 457

Query: 304 ATDLLKQLKDKFKDDEMAMEYH-FSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRK 362
            T++LK      +     + Y+   + +C     D  D  + + +L+ +K     P    
Sbjct: 458 LTNMLKG-----RPTPTLVTYNIIIKGYC-----DSGDTDVAIRVLELMKANGCQPDEWS 507

Query: 363 CLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
             + + G C  ++ ++ A  ++ E  + GL  N ++Y  +   +        A+++L +M
Sbjct: 508 YTELISGFCKISK-MELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERM 566

Query: 423 PKDD--PHVRFVIQACKQTYT--IPSLQKERGF 451
            +    P+V        QTY   I  L K+  F
Sbjct: 567 KRSGCRPNV--------QTYNVLIHGLTKQNNF 591



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/252 (19%), Positives = 103/252 (40%), Gaps = 13/252 (5%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  + P + +Y  +I   C    +  A ++  +M +    P+  T +++++    S   N
Sbjct: 256 KSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVN 315

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
                   +  H + P   TF + I     +   + A+ +  D+K+    P    Y +++
Sbjct: 316 EALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLI 375

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQ 180
           +G   ++  + A+ +   M +  V P++ T++ L++      +I   +  +  +   G  
Sbjct: 376 SG---QRVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCL 432

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE----VKSALVSALASHGRTSDA 236
                +  LI  Y T G+ EKA  ++ +    +K R        + ++      G T  A
Sbjct: 433 PNTSSYNELIRGYCTIGDTEKAMSMLTNM---LKGRPTPTLVTYNIIIKGYCDSGDTDVA 489

Query: 237 IIVYEEIKEAGC 248
           I V E +K  GC
Sbjct: 490 IRVLELMKANGC 501



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 40/193 (20%), Positives = 70/193 (36%), Gaps = 35/193 (18%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN--- 63
           + P+  +Y  LI+  C   K+  A  ++E+M +    P+ +T N ++H   +   F+   
Sbjct: 536 LCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAE 595

Query: 64  --------------------------------LVRRIYPMICHHNLKPNSETFRSMISLN 91
                                           L   ++  +  H   PN  T+ S+I   
Sbjct: 596 ELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQAL 655

Query: 92  VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151
            +    + A  +  +LK+  L+P    Y  ++        V  A   L EM  A  +P  
Sbjct: 656 GQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTL 715

Query: 152 QTFSYLIHNCSNE 164
           QT+  LI    NE
Sbjct: 716 QTYDVLIKGLQNE 728



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 33/196 (16%), Positives = 78/196 (39%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+   Y  +I   C    V  A  ++ ++ +  + P T T  S++     + + +   
Sbjct: 224 LQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAF 283

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            I+  +     +PN+ T+ ++I+        + A   + ++    ++PT   + A +   
Sbjct: 284 EIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVAL 343

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVF 186
                ++ A  +  +M++   KP+  T++ LI         I  + ++   G       +
Sbjct: 344 CDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQRVSRMAIGLFHRMSRDGVVPNTVTY 403

Query: 187 MALINAYTTCGEFEKA 202
            AL+N      E + A
Sbjct: 404 NALMNVLMENMEIDSA 419


>gi|242074832|ref|XP_002447352.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
 gi|241938535|gb|EES11680.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
          Length = 888

 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 122/278 (43%), Gaps = 4/278 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I  ++ +Y  LI     L     A  + E M++  L P     N ++ A  +    +   
Sbjct: 459 IKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAI 518

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           RI+  +    ++P++ TFR +I       D   A   LD ++     PT   YNA++ G 
Sbjct: 519 RIFERMKKERMQPSNRTFRPIIEGFAVAGDMKRALDTLDLMRRSGCAPTVMTYNALIHGL 578

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITK 183
            RK  V+ A+ VL +M  A + P+  T++ ++   +   DI K   Y+ ++K +G ++  
Sbjct: 579 IRKHQVERAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDV 638

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE-VKSALVSALASHGRTSDAIIVYEE 242
           Y++  L+ A    G  + A  V  +       R+  + + L+   A  G   +A  + ++
Sbjct: 639 YIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLMKQ 698

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           +KE G         + I      G++ R   +++E+ D
Sbjct: 699 MKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMAD 736



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/336 (19%), Positives = 145/336 (43%), Gaps = 43/336 (12%)

Query: 75  HNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQG 134
           H +K N++T+  +I+  + + DF +A+S+ +D+ +  L P  ++YN ++  + +  ++  
Sbjct: 457 HGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDR 516

Query: 135 ALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQL---KSAGGQITKYVFMALIN 191
           A+ + + M++  ++P ++TF  +I   +   D+ +  + L   + +G   T   + ALI+
Sbjct: 517 AIRIFERMKKERMQPSNRTFRPIIEGFAVAGDMKRALDTLDLMRRSGCAPTVMTYNALIH 576

Query: 192 AYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNL 250
                 + E+A  V+    I  +       + ++   A+ G    A   + +IKE+G  L
Sbjct: 577 GLIRKHQVERAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKL 636

Query: 251 EPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQ 310
           +      L+      G +   + +  E+                   F+++   T +   
Sbjct: 637 DVYIYETLLRACCKSGRMQSALAVTREMS------------------FQKIPRNTFIYNI 678

Query: 311 LKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGA 370
           L D +                        DV    DL++ +K++ G+PP+       + A
Sbjct: 679 LIDGW--------------------ARRGDVWEAADLMKQMKED-GIPPNIHTFTSYINA 717

Query: 371 CVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAF 406
           C  A D++RA  + +E  + GL  NV ++  + K +
Sbjct: 718 CCKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGW 753



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/357 (19%), Positives = 143/357 (40%), Gaps = 22/357 (6%)

Query: 80  NSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVL 139
           N   + ++I  + +  + D A  L+ +++E  +     +Y+++M GY   +D +  L+V 
Sbjct: 357 NGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVAQDEKKCLIVF 416

Query: 140 KEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTC 196
           + +++   +P   ++  LI+           +   ++++S G +     +  LIN +   
Sbjct: 417 ERLKECGFRPSIISYGCLINLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLINGFIHL 476

Query: 197 GEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255
            +F  A  +  D  +  ++    + + LV A    G    AI ++E +K+       R  
Sbjct: 477 HDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMKKERMQPSNRTF 536

Query: 256 IALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC-------RLILHCVRFKQLSSATDLL 308
             +IE     G++ R +  L+ +        GC         LI   +R  Q+  A  +L
Sbjct: 537 RPIIEGFAVAGDMKRALDTLDLMR-----RSGCAPTVMTYNALIHGLIRKHQVERAVSVL 591

Query: 309 KQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLL 368
               DK     +A   H   I  +       D+    +    IK E GL       + LL
Sbjct: 592 ----DKMSIAGIAPNEHTYTIIMR-GYAASGDIGKAFEYFTKIK-ESGLKLDVYIYETLL 645

Query: 369 GACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKD 425
            AC  +  ++ A  + +E     +P N   Y  +   +   G+   A+ L+ +M +D
Sbjct: 646 RACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLMKQMKED 702



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/351 (19%), Positives = 148/351 (42%), Gaps = 12/351 (3%)

Query: 78  KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALM 137
           KP+   F  M+    K  D   A +  ++++   + P A ++ +++  Y   +D++GAL 
Sbjct: 250 KPSRREFGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALS 309

Query: 138 VLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYT 194
            ++EM+   ++    T+S LI      ++ E   K +++ K+    +   ++  +I+A+ 
Sbjct: 310 CVEEMKSEGLEMTVVTYSILIAGYGKTNDAESADKLFKEAKTKLDNLNGIIYSNIIHAHC 369

Query: 195 TCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPR 253
             G  ++A ++V +  E  + +  +V  +++            +IV+E +KE G      
Sbjct: 370 QSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVAQDEKKCLIVFERLKECGFRPSII 429

Query: 254 AVIALIEHLNSEGELNRLIQLLEEV--HDPDYWMDGCCRLILHCVRFKQLSSATDLLKQL 311
           +   LI      G++ + + + +E+  H   +       LI   +     ++A  + + +
Sbjct: 430 SYGCLINLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDM 489

Query: 312 KDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGAC 371
                  + A+     E FC++   D       + + + +K E   P +R     + G  
Sbjct: 490 IKSGLQPDRAIYNLLVEAFCKMGNMDR-----AIRIFERMKKERMQPSNRTFRPIIEGFA 544

Query: 372 VNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           V A D+KRA         +G    V++Y  +    +     + A  +L KM
Sbjct: 545 V-AGDMKRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDKM 594



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 74/163 (45%), Gaps = 16/163 (9%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS 86
           V  A D+++QM +  + P+  T  S ++AC ++ +      +   +    LKPN +TF +
Sbjct: 689 VWEAADLMKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTT 748

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV------QGALMVLK 140
           +I    K+   D A    +++K   L P  + Y+ ++     +  V       G L V +
Sbjct: 749 LIKGWAKVSLPDRALKCFEEMKSAGLKPDEAAYHCLVTSLLSRATVMEGSTYTGILSVCR 808

Query: 141 EMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK 183
           EM + ++  D +T    +H         K+  +++  GG +T+
Sbjct: 809 EMFENDLTVDLRT---AVHWS-------KWLHEIERTGGALTE 841



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 36/189 (19%), Positives = 80/189 (42%), Gaps = 3/189 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P+  +Y  ++        +  A +   ++ +  L        ++L AC +S       
Sbjct: 599 IAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSAL 658

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +    +  N+  +  +I    +  D   A  L+  +KE  + P    + + +   
Sbjct: 659 AVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLMKQMKEDGIPPNIHTFTSYINAC 718

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLKSAGGQITK 183
            +  D+Q A  V++EM    +KP+ +TF+ LI   +     +  +K +E++KSAG +  +
Sbjct: 719 CKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWAKVSLPDRALKCFEEMKSAGLKPDE 778

Query: 184 YVFMALINA 192
             +  L+ +
Sbjct: 779 AAYHCLVTS 787


>gi|242044666|ref|XP_002460204.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
 gi|241923581|gb|EER96725.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
          Length = 637

 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 135/310 (43%), Gaps = 19/310 (6%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +I P+  +Y  +I   C+   +  A  + + M +  + P+  T N ++    +  + N  
Sbjct: 208 QIDPNVITYTSMICVLCEEGCIGDAERLFDAMKEAGMRPNQYTYNVLMSGHCQGDDVNSA 267

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +Y  + +  L PN+  F ++I    K K F  A  +  D+    + PT  +YN++M G
Sbjct: 268 FVLYQELLNSGLIPNAVVFTTLIDGFCKAKRFSEAKDMFRDMPRFGVAPTVPVYNSLMDG 327

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQIT 182
            FR  D Q AL + +EM +  + PD  T S ++    +   I    ++ E ++  G  + 
Sbjct: 328 AFRSGDAQEALSLYQEMTRLGLCPDEFTCSIVVRGLCDGGQIQVAARFLEGVREDGVNLN 387

Query: 183 KYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
              + ALI+ Y   G  E+A        E+ V+      S+L+   +  G+   A+ +Y 
Sbjct: 388 AAAYNALIDEYCRNGNLEEALATCTRMTEVGVEPNVVSYSSLIDGHSKLGKMQIAMAIYT 447

Query: 242 EIKEAGCNLEPRAV--IALIEHLNSEGELNRLI----QLLEEVHDPD-----YWMDGCCR 290
           E+   G  +EP  V   ALI      G ++       +++E    P+       +DG CR
Sbjct: 448 EMVAKG--IEPNVVTYTALIHGHAKNGGIDAAFRFHKEMIENGISPNAITVSVLVDGLCR 505

Query: 291 --LILHCVRF 298
              +   VRF
Sbjct: 506 ENRVQDAVRF 515



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 112/246 (45%), Gaps = 10/246 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A ++ ++M++  +VPS  T N++++AC         + ++  +    + PN  T+ SMI 
Sbjct: 162 AWELFDEMLRRGMVPSVVTYNTLINACRYQGAVAKAQEMWDQMVARQIDPNVITYTSMIC 221

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  +      A  L D +KE  + P    YN +M+G+ +  DV  A ++ +E+  + + P
Sbjct: 222 VLCEEGCIGDAERLFDAMKEAGMRPNQYTYNVLMSGHCQGDDVNSAFVLYQELLNSGLIP 281

Query: 150 DSQTFSYLIHN-C-----SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203
           ++  F+ LI   C     S  +D+   +  +   G   T  V+ +L++     G+ ++A 
Sbjct: 282 NAVVFTTLIDGFCKAKRFSEAKDM---FRDMPRFGVAPTVPVYNSLMDGAFRSGDAQEAL 338

Query: 204 QVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
            +  +   + +       S +V  L   G+   A    E ++E G NL   A  ALI+  
Sbjct: 339 SLYQEMTRLGLCPDEFTCSIVVRGLCDGGQIQVAARFLEGVREDGVNLNAAAYNALIDEY 398

Query: 263 NSEGEL 268
              G L
Sbjct: 399 CRNGNL 404



 Score = 44.7 bits (104), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 74/159 (46%), Gaps = 3/159 (1%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           ++A+Y  LI   C    +  AL    +M +  + P+  + +S++    +  +  +   IY
Sbjct: 387 NAAAYNALIDEYCRNGNLEEALATCTRMTEVGVEPNVVSYSSLIDGHSKLGKMQIAMAIY 446

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
             +    ++PN  T+ ++I  + K    D+A+    ++ E  + P A   + ++ G  R+
Sbjct: 447 TEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRFHKEMIENGISPNAITVSVLVDGLCRE 506

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII 168
             VQ A+  +  ME + +K  S   S+  +  + EE +I
Sbjct: 507 NRVQDAVRFV--MEHSGIK-YSDIHSFFSNFTTEEEPLI 542



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 33/175 (18%), Positives = 73/175 (41%), Gaps = 19/175 (10%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           ++ + P+  SY  LI     L K+ +A+ +  +MV   + P+  T  +++H   ++   +
Sbjct: 416 EVGVEPNVVSYSSLIDGHSKLGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGID 475

Query: 64  LVRRIYPMICHHNLKPNSETFRSMIS------------------LNVKIKDFDSAYSLLD 105
              R +  +  + + PN+ T   ++                     +K  D  S +S   
Sbjct: 476 AAFRFHKEMIENGISPNAITVSVLVDGLCRENRVQDAVRFVMEHSGIKYSDIHSFFSNFT 535

Query: 106 DLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160
             +E  L+P +++Y  ++ G +       A  +   M ++ +  DS T++ LI  
Sbjct: 536 T-EEEPLIPNSAIYMTLIYGLYLDGQHYEAGKLFSYMRKSGMISDSFTYTLLIRG 589


>gi|326528911|dbj|BAJ97477.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 913

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 123/278 (44%), Gaps = 4/278 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I  ++ +Y  LI+    L     A  + E+M++  L P     N ++ A  +    +   
Sbjct: 483 IKHNNKTYSMLISGFIHLHDFTNAFRIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAI 542

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           RI   +    ++P++  FR +I       D   A  +LD ++     PT   YNA++ G 
Sbjct: 543 RILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALDILDLMRRSGCAPTVMTYNALIHGL 602

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITK 183
            RK  V+ A+ VL +M  A + P+  T++ ++   +   DI K   Y+ ++K  G ++  
Sbjct: 603 IRKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAATGDIAKAFEYFTKIKEGGLKLDV 662

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE-VKSALVSALASHGRTSDAIIVYEE 242
           Y++  L+ A    G  + A  V  +      +R+  V + L+   A  G   +A  + ++
Sbjct: 663 YIYETLLRACCKSGRMQSALAVTREMSSQKIARNTFVYNILIDGWARRGDVWEAADLMKQ 722

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           +KE G         + I      G++ R   +++E+ D
Sbjct: 723 MKEDGVPPNIHTYTSYINACCKAGDMQRAQTVIDEMSD 760



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 68/353 (19%), Positives = 143/353 (40%), Gaps = 47/353 (13%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
            +K N++T+  +IS  + + DF +A+ + +++ +  L P  ++YN ++  + +  ++  A
Sbjct: 482 GIKHNNKTYSMLISGFIHLHDFTNAFRIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRA 541

Query: 136 LMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQL---KSAGGQITKYVFMALINA 192
           + +L++M++  ++P ++ F  +I   +   D+ +  + L   + +G   T   + ALI+ 
Sbjct: 542 IRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALDILDLMRRSGCAPTVMTYNALIHG 601

Query: 193 YTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLE 251
                + E+A  V+    I  +       + ++   A+ G  + A   + +IKE G  L+
Sbjct: 602 LIRKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAATGDIAKAFEYFTKIKEGGLKLD 661

Query: 252 PRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL--HCVRFKQLSSATDLLK 309
                 L+      G +   + +  E+       +     IL     R   +  A DL+K
Sbjct: 662 VYIYETLLRACCKSGRMQSALAVTREMSSQKIARNTFVYNILIDGWARRGDVWEAADLMK 721

Query: 310 QLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLG 369
           Q+K                                         E G+PP+       + 
Sbjct: 722 QMK-----------------------------------------EDGVPPNIHTYTSYIN 740

Query: 370 ACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           AC  A D++RA  +  E  + GL  N+ +Y  + K +  +     A K   +M
Sbjct: 741 ACCKAGDMQRAQTVIDEMSDVGLKPNLKTYTTLIKGWARASLPDRALKCFEEM 793



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/305 (19%), Positives = 116/305 (38%), Gaps = 41/305 (13%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  + P  A Y  LI   C +  +  A+ ++E+M +  + PS      I+     + +  
Sbjct: 515 KSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMK 574

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               I  ++      P   T+ ++I   ++    + A S+L+ +    + P    Y  IM
Sbjct: 575 RALDILDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPNEHTYTIIM 634

Query: 124 AGYFRKKDV-----------------------------------QGALMVLKEMEQANVK 148
            GY    D+                                   Q AL V +EM    + 
Sbjct: 635 RGYAATGDIAKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSSQKIA 694

Query: 149 PDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
            ++  ++ LI   +   D+ +     +Q+K  G     + + + INA    G+ ++A Q 
Sbjct: 695 RNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRA-QT 753

Query: 206 VLD--AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
           V+D  +++ +K   +  + L+   A       A+  +EE+K AG   +  A   L+  L 
Sbjct: 754 VIDEMSDVGLKPNLKTYTTLIKGWARASLPDRALKCFEEMKLAGLKPDEAAYHCLVTSLL 813

Query: 264 SEGEL 268
           S   +
Sbjct: 814 SRATV 818



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 76/364 (20%), Positives = 155/364 (42%), Gaps = 38/364 (10%)

Query: 78  KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALM 137
           KP+   F  MI    K  D   A +  ++++   + P A ++ +++  Y   +D++GAL 
Sbjct: 274 KPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALS 333

Query: 138 VLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYT 194
             +EM+   ++    T+S LI      ++ +     +++ K+  G +   ++  +I+A+ 
Sbjct: 334 CTEEMKAEGIELTIVTYSILISGFGKINDTQSADNLFKEAKTNLGDLNGIIYSNIIHAHC 393

Query: 195 TCGEFEKARQVVLDAEIPVKSRSEVKSALVSALAS--HGRT-----SDAIIVYEEIKEAG 247
             G  ++A ++V + E       +   A + A  S  HG T        +IV+E +KE  
Sbjct: 394 QSGNMDRAEELVHEME------EDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKE-- 445

Query: 248 CNLEPRAVI--ALIEHLNSEGELNRLIQLLEEV-------HDPDYWMDGCCRLILHCVRF 298
           C   P  +    LI      G++ + I + +E+       ++  Y M     LI   +  
Sbjct: 446 CCFTPSIISYGCLINLYVKIGKVAKAIAISKEMESSGIKHNNKTYSM-----LISGFIHL 500

Query: 299 KQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLP 358
              ++A  + +++       + A+     E FC++   D       + +L+ ++ E   P
Sbjct: 501 HDFTNAFRIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDR-----AIRILEKMQKERMQP 555

Query: 359 PSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKL 418
            +R     + G  V A D+KRA  I      +G    V++Y  +    +     + A  +
Sbjct: 556 SNRAFRPIIEGFAV-AGDMKRALDILDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSV 614

Query: 419 LSKM 422
           L+KM
Sbjct: 615 LNKM 618


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 158/387 (40%), Gaps = 20/387 (5%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P+T T N IL          L  R++  +      PN  TF  MI    K  D   A +L
Sbjct: 161 PNTRTCNHILLCLARERSSELAWRLFEQL----PAPNVFTFNIMIDFLCKEGDLAEARAL 216

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC-- 161
           L  +K +   P    YN+++ GY +  +++    ++ EM     +PD  T++ L+ NC  
Sbjct: 217 LARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALV-NCFC 275

Query: 162 --SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEV 219
                E    Y+ ++K  G       F   ++A+   G   +A ++     +     +EV
Sbjct: 276 KFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEV 335

Query: 220 K-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG---ELNRLIQLL 275
             + LV      GR  DA+++  E+ + G  L       L++ L  EG   E   + +L+
Sbjct: 336 TYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLM 395

Query: 276 EEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIAT 335
           E        +     +  H V +K    A  LL ++KDK  + ++++        C +  
Sbjct: 396 ERAGIRANELLYTTLIHGHFV-YKNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQK 454

Query: 336 TDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYN 395
            D         LL  + DE GL P+      ++ AC  AR    A  + ++  ++G   N
Sbjct: 455 LDEAK-----SLLNKM-DECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPN 508

Query: 396 VLSYLWMYKAFLASGNRKSASKLLSKM 422
           +++Y  +      +G+   A    +KM
Sbjct: 509 IVTYCALVDGLCKAGSIDEAISHFNKM 535



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/317 (18%), Positives = 126/317 (39%), Gaps = 39/317 (12%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  L+   C   ++  A     +M +  ++ +  T ++ + A  ++       ++
Sbjct: 262 PDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKL 321

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    +KPN  T+  ++    K    D A  L +++ +  +      Y  ++ G  +
Sbjct: 322 FAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCK 381

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYV 185
           +  V  A  V + ME+A ++ +   ++ LIH      N E  +    ++K  G ++   +
Sbjct: 382 EGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSL 441

Query: 186 FMALINAYTTCGEFEKARQV------------------VLDAEIPVKSRSEVKS------ 221
           + ALI       + ++A+ +                  ++DA    +  SE  +      
Sbjct: 442 YGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMM 501

Query: 222 ------------ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN 269
                       ALV  L   G   +AI  + ++ + G     +A  AL++ L   G L+
Sbjct: 502 DSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLD 561

Query: 270 RLIQLLEEVHDPDYWMD 286
           + + LL+E+ D    +D
Sbjct: 562 KAVLLLDEMIDKGMSLD 578



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/239 (20%), Positives = 106/239 (44%), Gaps = 12/239 (5%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHAC----EESYEFNLVRRIY 69
           Y  LI   C+L K+  A  ++ +M +  L P+     +I+ AC    +ES    L++++ 
Sbjct: 442 YGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMM 501

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
                   +PN  T+ +++    K    D A S  + + ++ L P    Y A++ G  + 
Sbjct: 502 ----DSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKN 557

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVF 186
             +  A+++L EM    +  D+   + L+       N +D      ++ ++G Q+  Y +
Sbjct: 558 GRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQLDLYGY 617

Query: 187 MALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
              +  +      ++AR+V+ +  E  +   + V + L++     G   +A I+  E++
Sbjct: 618 TCFVWGFCNLNMIQEAREVLSEMIENGITPDAVVYNCLINKCQKLGNMEEAAILQNEME 676


>gi|302794007|ref|XP_002978768.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
 gi|300153577|gb|EFJ20215.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
          Length = 713

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/345 (21%), Positives = 154/345 (44%), Gaps = 22/345 (6%)

Query: 7   ITPSSASYK---KLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           ++P++A+Y    KL T + ++ K   ALD++E+M +  + P+      I+       +F 
Sbjct: 302 LSPTAATYGCIVKLFTKAGNMAK---ALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFT 358

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              +++  +    LKP+  T+  ++    K    D A  +L++++   L+PT   Y +I+
Sbjct: 359 AAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRMDKALGVLENIQANRLLPTIETYTSIL 418

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQ 180
            GY +   +Q AL V   ++ A ++P   +++ L+   +     E+     +++ + G  
Sbjct: 419 DGYVKGGHIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLDEMLANGVV 478

Query: 181 ITKYVFMALINAYTTCGEFEKA-----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSD 235
             +  + AL   Y   G+ EKA     R    +  I + +      AL+ A    G    
Sbjct: 479 PNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAY----GALLKACCKSGAMQR 534

Query: 236 AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLIL 293
           A+ V+++I +AG          +++    +GEL++   LL+++    + +D  C    I 
Sbjct: 535 AVEVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLKDMQKHGFHLDTICYTSFIK 594

Query: 294 HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDP 338
            C R       T+ L  +++  K  E+    + + I   +A  DP
Sbjct: 595 ACFRSGDTEEVTETLAVMRE--KKLEVNARTYTTLIHGWLAAADP 637



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 87/407 (21%), Positives = 167/407 (41%), Gaps = 54/407 (13%)

Query: 42  LVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAY 101
           LVP     NSI+ A  ++     V  +   +     + N   + ++++   +I+D +   
Sbjct: 232 LVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCL 291

Query: 102 SLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC 161
           S    LK   L PTA+ Y  I+  + +  ++  AL +L+EM++  V P+   ++ ++   
Sbjct: 292 SFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGY 351

Query: 162 SNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAE----IPVK 214
           +   D     K +E + SAG +     +  L++A+   G  +KA  V+ + +    +P  
Sbjct: 352 ARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRMDKALGVLENIQANRLLPT- 410

Query: 215 SRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQL 274
              E  ++++      G    A+ V++ IK AG  L P  V             N L+  
Sbjct: 411 --IETYTSILDGYVKGGHIQKALEVFDRIKTAG--LRPGVV-----------SYNSLLSG 455

Query: 275 LEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIA 334
           L                     + +Q+ +A  +L ++     +  +  E  ++ +    A
Sbjct: 456 L--------------------AKARQMENARLMLDEM---LANGVVPNERSYTALTEGYA 492

Query: 335 TTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPY 394
                DV+    + Q +K E  L         LL AC  +  ++RA  ++++  +AGL +
Sbjct: 493 RAG--DVEKAFGMFQRMKKE-NLAIDIVAYGALLKACCKSGAMQRAVEVFQQITDAGLKH 549

Query: 395 NVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFV-----IQAC 436
           N ++Y  M   +   G    A  LL  M K   H+  +     I+AC
Sbjct: 550 NRITYCTMLDGWARKGELSKARDLLKDMQKHGFHLDTICYTSFIKAC 596



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/193 (21%), Positives = 81/193 (41%), Gaps = 3/193 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  SY  L         V  A  + ++M +  L        ++L AC +S       
Sbjct: 477 VVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAV 536

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  I    LK N  T+ +M+    +  +   A  LL D+++         Y + +   
Sbjct: 537 EVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLKDMQKHGFHLDTICYTSFIKAC 596

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
           FR  D +     L  M +  ++ +++T++ LIH     ++ +  I  YEQ K++G Q+  
Sbjct: 597 FRSGDTEEVTETLAVMREKKLEVNARTYTTLIHGWLAAADPDQAISCYEQAKASGLQLDS 656

Query: 184 YVFMALINAYTTC 196
            +   L++   +C
Sbjct: 657 ALSNCLLSGLISC 669



 Score = 45.4 bits (106), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 66/400 (16%), Positives = 145/400 (36%), Gaps = 55/400 (13%)

Query: 78  KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALM 137
           KP    +  ++    +  D  +A +  + ++  ++ P   +Y +++  Y   +D++GA+ 
Sbjct: 128 KPVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVA 187

Query: 138 VLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYT 194
             +EM    ++ +   F  +I       N E    ++E+ K+        V+ +++ AY 
Sbjct: 188 CTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYC 247

Query: 195 TCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPR 253
             G  E    ++    E   +    + + +++  A        +  +  +K   C L P 
Sbjct: 248 QAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLK--ACGLSPT 305

Query: 254 AVI--ALIEHLNSEGELNRLIQLLEEVH----DPDYW-----MDGCCRLILHCVRFKQLS 302
           A     +++     G + + + +LEE+      P+       MDG         R    +
Sbjct: 306 AATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDG-------YARGGDFT 358

Query: 303 SATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPP----------------------- 339
           +A  + + +       ++         FC+    D                         
Sbjct: 359 AAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRMDKALGVLENIQANRLLPTIETYTSIL 418

Query: 340 -------DVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGL 392
                   +Q  L++   IK   GL P     + LL     AR ++ A L+  E    G+
Sbjct: 419 DGYVKGGHIQKALEVFDRIKTA-GLRPGVVSYNSLLSGLAKARQMENARLMLDEMLANGV 477

Query: 393 PYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFV 432
             N  SY  + + +  +G+ + A  +  +M K++  +  V
Sbjct: 478 VPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIV 517


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 110/226 (48%), Gaps = 12/226 (5%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           +V VAL+++E+M Q E+ P+  T  SIL  C         ++++  I             
Sbjct: 278 QVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVN 337

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           ++I++  K      A  L  DL   +++     + A++ GY +      A+ + + M+Q 
Sbjct: 338 ALITMYCKCGGLKEARKLFGDLPHRDVV----TWTAMVTGYAQLGFHDEAIDLFRRMQQQ 393

Query: 146 NVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
            +KPD  TF+  + +CS+    ++    ++QL  AG  +  Y+  AL++ Y  CG  + A
Sbjct: 394 GIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDA 453

Query: 203 RQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAG 247
           R V       +  R+ V  +A+++  A HGR  +A+  +E++K+ G
Sbjct: 454 RLVFNQ----MSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQG 495



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 98/208 (47%), Gaps = 12/208 (5%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P   T  S+L+A        + ++++  I    L+       S++ +  K  D   A  +
Sbjct: 195 PDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVI 254

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163
            D L E N++     +  ++AGY ++  V  AL +L++M+QA V P+  T++ ++  C+ 
Sbjct: 255 FDKLPEKNVV----TWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTT 310

Query: 164 E---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK 220
               E   K +  +  +G     +V  ALI  Y  CG  ++AR++  D    +  R  V 
Sbjct: 311 PLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGD----LPHRDVVT 366

Query: 221 -SALVSALASHGRTSDAIIVYEEIKEAG 247
            +A+V+  A  G   +AI ++  +++ G
Sbjct: 367 WTAMVTGYAQLGFHDEAIDLFRRMQQQG 394



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/284 (19%), Positives = 119/284 (41%), Gaps = 51/284 (17%)

Query: 9   PSSASYKKLITYS--------CDLLKVHVALDVVEQMV-QGELVPSTETINSILHACEES 59
           P +A ++K+ T +        C   ++  AL ++  M+ QG  V S +    +L  C   
Sbjct: 51  PGNAGFRKVDTLANSGDVSILCKQGRLKEALGILNTMILQGTRVYS-DVFRGLLQECARL 109

Query: 60  YEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMY 119
                 R ++  I    ++PN     +++S+  K      A  + D +++ N++   +M 
Sbjct: 110 RSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMI 169

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGG 179
            A +AG                                    +   +  K YE +K AG 
Sbjct: 170 EAFVAG------------------------------------NQNLEAYKCYETMKLAGC 193

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAII 238
           +  K  F++L+NA+T     +  ++V ++ A+  ++    V ++LV   A  G  S A +
Sbjct: 194 KPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQV 253

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPD 282
           +++++ E   N+    +  LI     +G+++  ++LLE++   +
Sbjct: 254 IFDKLPEK--NVVTWTL--LIAGYAQQGQVDVALELLEKMQQAE 293


>gi|302801912|ref|XP_002982712.1| hypothetical protein SELMODRAFT_116683 [Selaginella moellendorffii]
 gi|300149811|gb|EFJ16465.1| hypothetical protein SELMODRAFT_116683 [Selaginella moellendorffii]
          Length = 734

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 116/255 (45%), Gaps = 8/255 (3%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  ++T          AL +  QM+   +  S  T  S L AC    +  L + I  +I
Sbjct: 380 SWSAMVTSHAQFGDPGKALTLFRQMILEGMQLSLPTFCSALQACSLKRDSRLSKTIRELI 439

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               +         ++S   K  D + A  + D ++  +++     +  ++ GY ++ D 
Sbjct: 440 DWSGIDKMDSIRADLVSAYSKCGDMEEARKIFDRMESRDVLT----WTVMIKGYAQQGDS 495

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA-GGQITKYVFMALIN 191
           + AL +   M+   V+PDS TFS ++  CSN ED  + + ++ +A GG+++ ++   LIN
Sbjct: 496 KAALELFHRMKPEGVEPDSVTFSSVLQACSNLEDGREVHARILAAQGGKMSDFLGNGLIN 555

Query: 192 AYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLE 251
            Y  CG    ARQ+    E   +S     SA+++  A HG+  D I  Y  +   G   +
Sbjct: 556 MYARCGSMRDARQIF---ESMDRSSRISWSAIMTLCARHGQHDDIIDTYRLMVNEGVVPD 612

Query: 252 PRAVIALIEHLNSEG 266
              +IA++   +  G
Sbjct: 613 GVTLIAILNSCSHAG 627



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 93/221 (42%), Gaps = 7/221 (3%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL++  +M +  L P+     S+L AC       L   I+  I    L+ +     ++I+
Sbjct: 198 ALELYHRMKRERLEPNGFVFASLLTACASLGNLQLGSSIHQRITSLGLQRDIVMENALIN 257

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K    D A  +   L   ++    SM    +AGY +      A      M +  V P
Sbjct: 258 MYSKCGCMDEALEVFSGLATRDVFTWTSM----IAGYAQLGFGSEAFAFYDRMRRDCVSP 313

Query: 150 DSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA 209
            S TF  L+  CS  E     +E++K+ G +    V  AL+  Y+ CG  E A    L A
Sbjct: 314 TSATFVALLSACSTLEQGKHLHEEVKAFGFESITVVETALMFMYSRCGSLEDAE--FLFA 371

Query: 210 EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNL 250
           ++  K      SA+V++ A  G    A+ ++ ++   G  L
Sbjct: 372 KMQQKDYVSW-SAMVTSHAQFGDPGKALTLFRQMILEGMQL 411


>gi|302798965|ref|XP_002981242.1| hypothetical protein SELMODRAFT_113974 [Selaginella moellendorffii]
 gi|300151296|gb|EFJ17943.1| hypothetical protein SELMODRAFT_113974 [Selaginella moellendorffii]
          Length = 734

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 116/255 (45%), Gaps = 8/255 (3%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  ++T          AL +  QM+   +  S  T  S L AC    +  L + I  +I
Sbjct: 380 SWSAMVTSHAQFGDPGKALTLFRQMILEGMQLSLPTFCSALQACSLKRDSRLSKTIRELI 439

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               +         ++S   K  D + A  + D ++  +++     +  ++ GY ++ D 
Sbjct: 440 DWSGIDKMDSIRADLVSAYSKCGDMEEARKIFDRMESRDVLT----WTVMIKGYAQQGDS 495

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA-GGQITKYVFMALIN 191
           + AL +   M+   V+PDS TFS ++  CSN ED  + + ++ +A GG+++ ++   LIN
Sbjct: 496 KAALELFHRMKPEGVEPDSVTFSSVLQACSNLEDGREVHARILAAQGGKMSDFLGNGLIN 555

Query: 192 AYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLE 251
            Y  CG    ARQ+    E   +S     SA+++  A HG+  D I  Y  +   G   +
Sbjct: 556 MYARCGSMRDARQIF---ESMDRSSRISWSAIMTLCARHGQHDDIIDTYRLMVNEGVVPD 612

Query: 252 PRAVIALIEHLNSEG 266
              +IA++   +  G
Sbjct: 613 GVTLIAILNSCSHAG 627



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 93/221 (42%), Gaps = 7/221 (3%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL++  +M +  L P+     S+L AC       L   I+  I    L+ +     ++I+
Sbjct: 198 ALELYHRMKRERLEPNGFVFASLLTACASLGNLELGSSIHQRITSLGLQRDIVMENALIN 257

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K    D A  +   L   ++    SM    +AGY +      A      M +  V P
Sbjct: 258 MYSKCGCMDEALEVFSGLATRDVFTWTSM----IAGYAQLGFGSEAFAFYDGMRRDCVSP 313

Query: 150 DSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA 209
            S TF  L+  CS  E     +E++K+ G +    V  AL+  Y+ CG  E A    L A
Sbjct: 314 TSATFVALLSACSTLEQGKHLHEEVKAFGFESITVVETALMFMYSRCGSLEDAE--FLFA 371

Query: 210 EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNL 250
           ++  K      SA+V++ A  G    A+ ++ ++   G  L
Sbjct: 372 KMQQKDYVSW-SAMVTSHAQFGDPGKALTLFRQMILEGMQL 411


>gi|302784708|ref|XP_002974126.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
 gi|300158458|gb|EFJ25081.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
          Length = 538

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 136/297 (45%), Gaps = 14/297 (4%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           TP+   Y  +IT  C   +V  A  V+E+MV+  +VP+  T   +L+    S +  L R 
Sbjct: 85  TPTVFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLARE 144

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           ++  +  +  KPN  T+ ++I    +  + D A  ++ + + + L         I+ G  
Sbjct: 145 VFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCTTIVGGLC 204

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKYYEQLKS-AGGQITK 183
           +   +  AL  ++EM Q  V+P+  T+S L+H      +   +I+++E+ K+  GG +  
Sbjct: 205 KASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEA 264

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             +   ++A    G  ++AR+ V +  +  V       S L++  A  G+   ++ + E+
Sbjct: 265 AAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLED 324

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELN---RLIQLLEEVHDP------DYWMDGCCR 290
           ++  G   +      LI  L  E +     RL++L+E    P      +  MDG C+
Sbjct: 325 MRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCK 381



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 78/381 (20%), Positives = 156/381 (40%), Gaps = 34/381 (8%)

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           +F+ V R++ ++    +     T++ ++         + A  L+ +L  +   PT  +YN
Sbjct: 34  KFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGMANQALELVRELSGV-YTPTVFIYN 92

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC--SNEEDIIK-YYEQLKSA 177
            I+ G  R   V  A  VL++M + ++ P+  T++ L++    SN+  + +  ++++K  
Sbjct: 93  GIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRN 152

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLDA---EIPVKSRSEVKSALVSALASHGRTS 234
           G +     +  LI   +  GE ++A +V+++    E+P    +   + +V  L    R  
Sbjct: 153 GCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVIT--CTTIVGGLCKASRLD 210

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEE-----------VHDPDY 283
           DA+   EE+++ G          L+      GEL+R+I+  EE              P Y
Sbjct: 211 DALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGY 270

Query: 284 WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQI 343
            +D  C+          L  A   +++L+      ++         F +    D      
Sbjct: 271 -LDALCKA-------GYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDAS---- 318

Query: 344 GLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMY 403
            L+LL+ ++   G+ P       L+      R  + A  + +  E AG P NV++Y  + 
Sbjct: 319 -LELLEDMRRN-GVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVM 376

Query: 404 KAFLASGNRKSASKLLSKMPK 424
                SG      ++   M K
Sbjct: 377 DGLCKSGKMDEVHRVYEMMLK 397



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 110/242 (45%), Gaps = 5/242 (2%)

Query: 11  SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYP 70
           +A+Y   +   C    +  A   VE++ Q  +VP   T + +++    + +F+    +  
Sbjct: 264 AAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLE 323

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
            +  + +KP+  T+ ++I++  K + F  A+ LL+ ++     P    YN++M G  +  
Sbjct: 324 DMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSG 383

Query: 131 DVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFM 187
            +     V + M ++   PD  T+S +++  S     +  +K +E +KS+        + 
Sbjct: 384 KMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYS 443

Query: 188 ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK--SALVSALASHGRTSDAIIVYEEIKE 245
            +I +    G+ E+A  +    E+ V   +  +  + LV+AL    RT  A  + E  +E
Sbjct: 444 MVITSLCRAGKLEEACGMYHGMEVTVAGDNICRALAGLVAALCDAKRTDSARRIVEVARE 503

Query: 246 AG 247
            G
Sbjct: 504 RG 505



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 55/272 (20%), Positives = 120/272 (44%), Gaps = 11/272 (4%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           LE+     +   ++   C   ++  AL  +E+M Q  + P+  T ++++H   +  E + 
Sbjct: 187 LELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDR 246

Query: 65  VRRIY-PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
           V R +            +  +   +    K    D A   +++L++  ++P    Y+ ++
Sbjct: 247 VIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLI 306

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQ 180
             + R      +L +L++M +  VKPD  T+S LI+    E   +D  +  E +++AG  
Sbjct: 307 NTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSP 366

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE----VKSALVSALASHGRTSDA 236
                + ++++     G+ ++  +V    E+ +KSR        S +++ L+  G    A
Sbjct: 367 PNVVTYNSVMDGLCKSGKMDEVHRVY---EMMLKSRCSPDVVTYSIIMNGLSKAGMLDSA 423

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGEL 268
           + ++E IK +    +  A   +I  L   G+L
Sbjct: 424 VKLFELIKSSREGPDAAAYSMVITSLCRAGKL 455



 Score = 45.8 bits (107), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 59/137 (43%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  LI   C   K   A  ++E M      P+  T NS++    +S + + V 
Sbjct: 330 VKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVH 389

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R+Y M+      P+  T+  +++   K    DSA  L + +K     P A+ Y+ ++   
Sbjct: 390 RVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITSL 449

Query: 127 FRKKDVQGALMVLKEME 143
            R   ++ A  +   ME
Sbjct: 450 CRAGKLEEACGMYHGME 466


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 99/469 (21%), Positives = 192/469 (40%), Gaps = 61/469 (13%)

Query: 2   HAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYE 61
           ++++ +  ++ SY  ++   C L KV  A  ++ QM     VP   + + I+    +  +
Sbjct: 243 YSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQ 302

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
              V ++   +    LKPN  T+ S+IS   K      A  +L  +K   + P   +Y  
Sbjct: 303 LGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTT 362

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAG 178
           +++G+ +  +V     +  EM++  + PD  T++ +IH       ++   K + ++ S G
Sbjct: 363 LISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKG 422

Query: 179 GQITKYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTS 234
            +  +  + ALI+ Y   GE ++A     Q+V     P        +ALV  L   G   
Sbjct: 423 LKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTP---NVVTYTALVDGLCKCGEVD 479

Query: 235 DAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYW-------- 284
            A  +  E+ E G  L+P      ALI  L   G + + ++L+EE+    ++        
Sbjct: 480 IANELLHEMSEKG--LQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTT 537

Query: 285 -MDGCCRLILHCVRFKQLSSATDLLKQLKDK---------------------FKDDEMAM 322
            MD  C++        +++ A +LL+ + DK                      +D E  +
Sbjct: 538 IMDAYCKM-------GEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLI 590

Query: 323 EYHFSEIFCQIATTDPP---------DVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVN 373
           ++   +     ATT            +++  +++ + +  + G+ P     + L+     
Sbjct: 591 KWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQ-GVVPDTNTYNILIKGHCK 649

Query: 374 ARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           AR++K A  + KE    G      SY  + K F      + A KL  +M
Sbjct: 650 ARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEM 698



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 67/337 (19%), Positives = 139/337 (41%), Gaps = 26/337 (7%)

Query: 99  SAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
           +A+ +  +  E+ +      YN I+    +   V+ A  +L +ME     PD  ++S ++
Sbjct: 235 TAFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIV 294

Query: 159 HN-CSNEE--DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVK 214
              C  E+   ++K  E+L+  G +  +Y + ++I+     G   +A QV+ +     + 
Sbjct: 295 DGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIF 354

Query: 215 SRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQL 274
             + V + L+S     G  S    +++E+K      +     ++I  L   G++    +L
Sbjct: 355 PDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKL 414

Query: 275 LEEVHD----PD-----YWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYH 325
             E+      PD       +DG C+         ++  A  L  Q+ +K     +     
Sbjct: 415 FSEMLSKGLKPDEVTYTALIDGYCKA-------GEMKEAFSLHNQMVEKGLTPNVVTYTA 467

Query: 326 FSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWK 385
             +  C+       +V I  +LL  +  E GL P+    + L+       ++++A  + +
Sbjct: 468 LVDGLCKCG-----EVDIANELLHEM-SEKGLQPNVCTYNALINGLCKVGNIEQAVKLME 521

Query: 386 EYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           E + AG   + ++Y  +  A+   G    A +LL  M
Sbjct: 522 EMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIM 558


>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
 gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
          Length = 538

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 136/297 (45%), Gaps = 14/297 (4%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           TP+   Y  +IT  C   +V  A  V+E+MV+  +VP+  T   +L+    S +  L R 
Sbjct: 85  TPTLFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLARE 144

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           ++  +  +  KPN  T+ ++I    +  + D A  ++ + + + L         I+ G  
Sbjct: 145 VFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCTTIVGGLC 204

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKYYEQLKS-AGGQITK 183
           +   +  AL  ++EM Q  V+P+  T+S L+H      +   +I+++E+ K+  GG +  
Sbjct: 205 KASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEA 264

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             +   ++A    G  ++AR+ V +  +  V       S L++  A  G+   ++ + E+
Sbjct: 265 AAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLED 324

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELN---RLIQLLEEVHDP------DYWMDGCCR 290
           ++  G   +      LI  L  E +     RL++L+E    P      +  MDG C+
Sbjct: 325 MRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCK 381



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 78/381 (20%), Positives = 156/381 (40%), Gaps = 34/381 (8%)

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           +F+ V R++ ++    +     T++ ++         + A  L+ +L  +   PT  +YN
Sbjct: 34  KFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGMANQALELVRELSGV-YTPTLFIYN 92

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC--SNEEDIIK-YYEQLKSA 177
            I+ G  R   V  A  VL++M + ++ P+  T++ L++    SN+  + +  ++++K  
Sbjct: 93  GIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRN 152

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLDA---EIPVKSRSEVKSALVSALASHGRTS 234
           G +     +  LI   +  GE ++A +V+++    E+P    +   + +V  L    R  
Sbjct: 153 GCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVIT--CTTIVGGLCKASRLD 210

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEE-----------VHDPDY 283
           DA+   EE+++ G          L+      GEL+R+I+  EE              P Y
Sbjct: 211 DALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGY 270

Query: 284 WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQI 343
            +D  C+          L  A   +++L+      ++         F +    D      
Sbjct: 271 -LDALCKA-------GYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDAS---- 318

Query: 344 GLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMY 403
            L+LL+ ++   G+ P       L+      R  + A  + +  E AG P NV++Y  + 
Sbjct: 319 -LELLEDMRRN-GVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVM 376

Query: 404 KAFLASGNRKSASKLLSKMPK 424
                SG      ++   M K
Sbjct: 377 DGLCKSGKMDEVHRVYEMMLK 397



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 109/242 (45%), Gaps = 5/242 (2%)

Query: 11  SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYP 70
           +A+Y   +   C    +  A   VE++ Q  +VP   T + +++    + +F+    +  
Sbjct: 264 AAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLE 323

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
            +  + +KP+  T+ ++I++  K + F  A+ LL+ ++     P    YN++M G  +  
Sbjct: 324 DMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSG 383

Query: 131 DVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFM 187
            +     V + M ++   PD  T+S +++  S     +  +K +E +KS+        + 
Sbjct: 384 KMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYS 443

Query: 188 ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK--SALVSALASHGRTSDAIIVYEEIKE 245
            +I +    G+ E+A  +    E+ V   +  +  + LV+AL    RT  A  + E   E
Sbjct: 444 MVITSLCRAGKLEEACGMYHGMEVTVAGDNICRALAGLVAALCDAERTDSARRIVEVASE 503

Query: 246 AG 247
            G
Sbjct: 504 RG 505



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 55/272 (20%), Positives = 120/272 (44%), Gaps = 11/272 (4%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           LE+     +   ++   C   ++  AL  +E+M Q  + P+  T ++++H   +  E + 
Sbjct: 187 LELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDR 246

Query: 65  VRRIY-PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
           V R +            +  +   +    K    D A   +++L++  ++P    Y+ ++
Sbjct: 247 VIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLI 306

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQ 180
             + R      +L +L++M +  VKPD  T+S LI+    E   +D  +  E +++AG  
Sbjct: 307 NTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSP 366

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE----VKSALVSALASHGRTSDA 236
                + ++++     G+ ++  +V    E+ +KSR        S +++ L+  G    A
Sbjct: 367 PNVVTYNSVMDGLCKSGKMDEVHRVY---EMMLKSRCSPDVVTYSIIMNGLSKAGMLDSA 423

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGEL 268
           + ++E IK +    +  A   +I  L   G+L
Sbjct: 424 VKLFELIKSSREGPDAAAYSMVITSLCRAGKL 455



 Score = 45.8 bits (107), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 59/137 (43%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  LI   C   K   A  ++E M      P+  T NS++    +S + + V 
Sbjct: 330 VKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVH 389

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R+Y M+      P+  T+  +++   K    DSA  L + +K     P A+ Y+ ++   
Sbjct: 390 RVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITSL 449

Query: 127 FRKKDVQGALMVLKEME 143
            R   ++ A  +   ME
Sbjct: 450 CRAGKLEEACGMYHGME 466


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 135/305 (44%), Gaps = 23/305 (7%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L I+ +  ++  ++   C   K+  A + +  M      P+  + N+I+H         
Sbjct: 220 RLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIE 279

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             RRI   +    ++P+S T+ S+IS   K    + A  L D + E+ L+P A  YN ++
Sbjct: 280 GARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLI 339

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE------EDIIKYYEQLKSA 177
            GY  K D++ A     EM +  + P   T++ L+H    E      +D+IK   +++  
Sbjct: 340 DGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIK---EMRKK 396

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK---SALVSALASHGRTS 234
           G       +  LIN Y+ CG  +KA    L  E+  K         ++L+  L+   R  
Sbjct: 397 GIIPDAITYNILINGYSRCGNAKKAFD--LHNEMLSKGIEPTHVTYTSLIYVLSRRNRMK 454

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPD-----YWM 285
           +A  ++E+I + G + +     A+++   + G + R   LL+E+      PD       M
Sbjct: 455 EADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLM 514

Query: 286 DGCCR 290
            G CR
Sbjct: 515 QGRCR 519



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 91/427 (21%), Positives = 176/427 (41%), Gaps = 28/427 (6%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           SS  +  L+   C+L +   A      M +  +VP  ET N +L    +     +   +Y
Sbjct: 156 SSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLY 215

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
             +    +     TF  M+++  K      A   +  ++ +   P    YN I+ GY  +
Sbjct: 216 AEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSR 275

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVF 186
            +++GA  +L  M    ++PDS T+  LI     E   E+    ++++   G       +
Sbjct: 276 GNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTY 335

Query: 187 MALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             LI+ Y   G+ E+A     ++V    +P  S   +   LV AL   GR  +A  + +E
Sbjct: 336 NTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNL---LVHALFMEGRMGEADDMIKE 392

Query: 243 IKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVH----DPDYWMDGCCRLILHCV 296
           +++ G  + P A+    LI   +  G   +   L  E+     +P +       LI    
Sbjct: 393 MRKKG--IIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVT--YTSLIYVLS 448

Query: 297 RFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELG 356
           R  ++  A DL +++ D+    ++ M     +  C        +V+    LL+ + D   
Sbjct: 449 RRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANG-----NVERAFMLLKEM-DRKS 502

Query: 357 LPPSRKCLDFLL-GACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSA 415
           +PP     + L+ G C   + ++ A ++  E +  G+  + +SY  +   +   G+ K A
Sbjct: 503 VPPDEVTFNTLMQGRCREGK-VEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDA 561

Query: 416 SKLLSKM 422
            ++  +M
Sbjct: 562 FRVRDEM 568



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/164 (20%), Positives = 75/164 (45%), Gaps = 2/164 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           ++P    +  ++   C    V  A  ++++M +  + P   T N+++   C E  +    
Sbjct: 468 VSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREG-KVEEA 526

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           R +   +    +KP+  ++ ++IS   +  D   A+ + D++  +   PT   YNA++  
Sbjct: 527 RMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKC 586

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK 169
             + ++   A  +LKEM    + PD  T+  LI    N + +++
Sbjct: 587 LCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNVDTLVE 630


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 113/230 (49%), Gaps = 14/230 (6%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A  + EQMVQ  + P   T   +L+AC ++   +    ++ +I +     +     ++I+
Sbjct: 189 AFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALIN 248

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +++K    D A  + ++L   +L+   SM    + G  R +  + A  + + ME+  V+P
Sbjct: 249 MHIKCGGVDDALKVFNNLPRRDLITWTSM----ITGLARHRQFKQACNLFQVMEEEGVQP 304

Query: 150 DSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D   F  L+  C++ E +    + + ++K  G     YV  AL++ YT CG  E A +V 
Sbjct: 305 DKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVF 364

Query: 207 LDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255
                 VK R+ V  +A+++  A HGR  +A + + ++ E+G  +EP  V
Sbjct: 365 ----NLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESG--IEPNRV 408



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 116/238 (48%), Gaps = 10/238 (4%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           ++  +IT      K   A+   + +++  + P + T  SIL+ C+      L + +  +I
Sbjct: 475 AWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLI 534

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
                + +     +++S+ V   D  SA +L +D+ E +L+     +N I+AG+ +  + 
Sbjct: 535 IRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVS----WNTIIAGFVQHGEN 590

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMAL 189
           Q A    K M+++ VKPD  TF+ L++ C++ E +    + +  +  A       V   L
Sbjct: 591 QFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGL 650

Query: 190 INAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           I+ YT CG  + A  V  +  +P K+     S +++  A HGR  +A+ ++ ++++ G
Sbjct: 651 ISMYTKCGSIDDAHLVFHN--LPKKNVYSWTS-MITGYAQHGRGKEALELFCQMQQEG 705



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 110/220 (50%), Gaps = 10/220 (4%)

Query: 47  ETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDD 106
           +T +S+L  C +        RI+  I    ++P+   +  +IS+  K  + +SA  + D+
Sbjct: 105 QTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDE 164

Query: 107 LKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED 166
           + + ++      +N ++ GY + +  + A  + ++M Q  VKPD  TF Y+++ C++ ++
Sbjct: 165 MPDKDVYS----WNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKN 220

Query: 167 IIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSAL 223
           + K    +  + +AG     +V  ALIN +  CG  + A +V     +P +      S +
Sbjct: 221 VDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVF--NNLPRRDLITWTS-M 277

Query: 224 VSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
           ++ LA H +   A  +++ ++E G   +  A ++L++  N
Sbjct: 278 ITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACN 317



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/239 (19%), Positives = 107/239 (44%), Gaps = 12/239 (5%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +I       ++  A     +M++  + P+  T  SIL AC         R+I+  I
Sbjct: 374 SWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRI 433

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
                  +     +++S+  K      A ++ + + + N++     +NA++  Y + +  
Sbjct: 434 IKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVA----WNAMITAYVQHEKY 489

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE--DIIKYYEQL-KSAGGQITKYVFMAL 189
             A+   + + +  +KPDS TF+ +++ C + +  ++ K+ + L   AG +   ++  AL
Sbjct: 490 DNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNAL 549

Query: 190 INAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAG 247
           ++ +  CG+   A  +  D    +  R  V  + +++    HG    A   ++ ++E+G
Sbjct: 550 VSMFVNCGDLMSAMNLFND----MPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESG 604



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 88/204 (43%), Gaps = 9/204 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A D  + M +  + P   T   +L+AC         RR++ +I    L  +      +IS
Sbjct: 593 AFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLIS 652

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K    D A+ +  +L + N+    SM    + GY +    + AL +  +M+Q  VKP
Sbjct: 653 MYTKCGSIDDAHLVFHNLPKKNVYSWTSM----ITGYAQHGRGKEALELFCQMQQEGVKP 708

Query: 150 DSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D  TF   +  C++   I   + ++E +K    +     +  +++ +   G   +A + +
Sbjct: 709 DWITFVGALSACAHAGLIKEGLHHFESMKDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFI 768

Query: 207 LDAEIPVKSRSEVKSALVSALASH 230
              ++ VK  S +  AL+ A   H
Sbjct: 769 --NKMQVKPDSRLWGALLGACQVH 790



 Score = 45.1 bits (105), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 48/256 (18%), Positives = 108/256 (42%), Gaps = 10/256 (3%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL V   + + +L+  T  I  +        +F     ++ ++    ++P+   F S++ 
Sbjct: 259 ALKVFNNLPRRDLITWTSMITGL----ARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLK 314

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
                +  +    +   +KE+ L     +  A+++ Y +   ++ AL V   ++  NV  
Sbjct: 315 ACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVS 374

Query: 150 DSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV---V 206
            +   +    +   EE  + ++ ++  +G +  +  FM+++ A +     ++ RQ+   +
Sbjct: 375 WTAMIAGFAQHGRMEEAFL-FFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRI 433

Query: 207 LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
           + A      R  V++AL+S  A  G   DA  V+E I +         + A ++H   + 
Sbjct: 434 IKAGYITDDR--VRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDN 491

Query: 267 ELNRLIQLLEEVHDPD 282
            +     LL+E   PD
Sbjct: 492 AVATFQALLKEGIKPD 507


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 104/433 (24%), Positives = 193/433 (44%), Gaps = 34/433 (7%)

Query: 45  STETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLL 104
           S  + N +L A  +  EF  V  +Y  +    + PN  TF ++I+   K+   + A  ++
Sbjct: 194 SVLSCNPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVV 253

Query: 105 DDLKEMNLMPTASMYNAIMAGYFRKKDVQ---GALMVLKEMEQANVKPDSQTFSYLIHNC 161
           DD+K     P    YN ++ GY +   V     A  +LKEM +  V P+S TF+ LI   
Sbjct: 254 DDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGF 313

Query: 162 SNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE 218
             +E++   +K +E+++S G + T   + +L+N     G+  +A+ V+LD  +    +  
Sbjct: 314 CKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAK-VLLDEMLSSNLKPN 372

Query: 219 VKS--ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNR--LI 272
           V +  AL++         +A  +++ I + G  L P  +    L+      G++    L+
Sbjct: 373 VITYNALINGYCKKKLLEEARELFDNIGKQG--LTPNVITFNTLLHGYCKFGKMEEAFLL 430

Query: 273 Q--LLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDK-FKDDEMAMEYHFSEI 329
           Q  +LE+   P+     C  LI+   R  ++    +LL +++ +  K D +      S  
Sbjct: 431 QKVMLEKGFLPNASTYNC--LIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILIS-- 486

Query: 330 FCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYEN 389
               A  +  + +    L+  + D+ GL PS    + LL       +L+ A  + K+ E 
Sbjct: 487 ----AWCEKKEPKKAARLIDEMLDK-GLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEK 541

Query: 390 AGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQACKQTY-TIPSLQKE 448
            G   NV++Y  + + +   G  + A+ LL++M +        +   + TY  I     E
Sbjct: 542 EGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKG------LIPNRTTYEIIKEEMME 595

Query: 449 RGFEKDRDTLLLH 461
           +GF  D +  L H
Sbjct: 596 KGFLPDIEGHLYH 608



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 99/204 (48%), Gaps = 3/204 (1%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +++P+S ++  LI   C    +  AL V E+M    L P+  T NS+++      + N  
Sbjct: 298 KVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEA 357

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           + +   +   NLKPN  T+ ++I+   K K  + A  L D++ +  L P    +N ++ G
Sbjct: 358 KVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHG 417

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQIT 182
           Y +   ++ A ++ K M +    P++ T++ LI     E   E++     +++  G +  
Sbjct: 418 YCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKAD 477

Query: 183 KYVFMALINAYTTCGEFEKARQVV 206
              +  LI+A+    E +KA +++
Sbjct: 478 TVTYNILISAWCEKKEPKKAARLI 501



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/285 (21%), Positives = 133/285 (46%), Gaps = 13/285 (4%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNL 64
           +I+P+  ++  +I   C + K++ A DVV+ M      P+  T N+++   C+      +
Sbjct: 225 KISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKM 284

Query: 65  VR--RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
            +   I   +  + + PNS TF  +I    K ++  +A  + ++++   L PT   YN++
Sbjct: 285 YKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSL 344

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGG 179
           + G   +  +  A ++L EM  +N+KP+  T++ LI+  C  +  E+  + ++ +   G 
Sbjct: 345 VNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGL 404

Query: 180 QITKYVFMALINAYTTCGEFEKA---RQVVLD-AEIPVKSRSEVKSALVSALASHGRTSD 235
                 F  L++ Y   G+ E+A   ++V+L+   +P    +   + L+      G+  +
Sbjct: 405 TPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLP---NASTYNCLIVGFCREGKMEE 461

Query: 236 AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
              +  E++  G   +      LI     + E  +  +L++E+ D
Sbjct: 462 VKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLD 506



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/316 (20%), Positives = 139/316 (43%), Gaps = 11/316 (3%)

Query: 9   PSSASYKKLITYSCDLLKV---HVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           P+  +Y  LI   C + +V   + A  ++++MV+ ++ P++ T N ++    +    +  
Sbjct: 263 PNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAA 322

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            +++  +    LKP   T+ S+++        + A  LLD++   NL P    YNA++ G
Sbjct: 323 LKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALING 382

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-C--SNEEDIIKYYEQLKSAGGQIT 182
           Y +KK ++ A  +   + +  + P+  TF+ L+H  C     E+     + +   G    
Sbjct: 383 YCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPN 442

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYE 241
              +  LI  +   G+ E+ + ++ + +   VK+ +   + L+SA         A  + +
Sbjct: 443 ASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLID 502

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL---HCVRF 298
           E+ + G          L+     EG L   + L +++     W +     +L   +C R 
Sbjct: 503 EMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYC-RK 561

Query: 299 KQLSSATDLLKQLKDK 314
            +L  A  LL ++ +K
Sbjct: 562 GKLEDANGLLNEMLEK 577



 Score = 41.6 bits (96), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 66/146 (45%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P++++Y  LI   C   K+    +++ +M    +   T T N ++ A  E  E     R+
Sbjct: 441 PNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARL 500

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    LKP+  T+  +++      +  +A +L   +++         YN ++ GY R
Sbjct: 501 IDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCR 560

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTF 154
           K  ++ A  +L EM +  + P+  T+
Sbjct: 561 KGKLEDANGLLNEMLEKGLIPNRTTY 586


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 134/305 (43%), Gaps = 23/305 (7%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L I+ +  ++  ++   C   K+  A + +  M      P+  + N+I+H         
Sbjct: 242 RLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIE 301

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             RRI   +    ++P+S T+ S+IS   K    + A  L D + E+ L+P A  YN ++
Sbjct: 302 GARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLI 361

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH------NCSNEEDIIKYYEQLKSA 177
            GY  K D++ A     EM +  + P   T++ L+H           +D+IK   +++  
Sbjct: 362 DGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIK---EMRKK 418

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK---SALVSALASHGRTS 234
           G       +  LIN Y+ CG  +KA    L  E+  K         ++L+  L+   R  
Sbjct: 419 GIIPDAITYNILINGYSRCGNAKKAFD--LHNEMLSKGIEPTHVTYTSLIYVLSRRNRMK 476

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPD-----YWM 285
           +A  ++E+I + G + +     A+++   + G + R   LL+E+      PD       M
Sbjct: 477 EADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLM 536

Query: 286 DGCCR 290
            G CR
Sbjct: 537 QGRCR 541



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 91/427 (21%), Positives = 176/427 (41%), Gaps = 28/427 (6%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           SS  +  L+   C+L +   A      M +  +VP  ET N +L    +     +   +Y
Sbjct: 178 SSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLY 237

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
             +    +     TF  M+++  K      A   +  ++ +   P    YN I+ GY  +
Sbjct: 238 AEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSR 297

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVF 186
            +++GA  +L  M    ++PDS T+  LI     E   E+    ++++   G       +
Sbjct: 298 GNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTY 357

Query: 187 MALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             LI+ Y   G+ E+A     ++V    +P  S   +   LV AL   GR  +A  + +E
Sbjct: 358 NTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNL---LVHALFMEGRMGEADDMIKE 414

Query: 243 IKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVH----DPDYWMDGCCRLILHCV 296
           +++ G  + P A+    LI   +  G   +   L  E+     +P +       LI    
Sbjct: 415 MRKKG--IIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVT--YTSLIYVLS 470

Query: 297 RFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELG 356
           R  ++  A DL +++ D+    ++ M     +  C        +V+    LL+ + D   
Sbjct: 471 RRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANG-----NVERAFMLLKEM-DRKS 524

Query: 357 LPPSRKCLDFLL-GACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSA 415
           +PP     + L+ G C   + ++ A ++  E +  G+  + +SY  +   +   G+ K A
Sbjct: 525 VPPDEVTFNTLMQGRCREGK-VEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDA 583

Query: 416 SKLLSKM 422
            ++  +M
Sbjct: 584 FRVRDEM 590



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/164 (20%), Positives = 75/164 (45%), Gaps = 2/164 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           ++P    +  ++   C    V  A  ++++M +  + P   T N+++   C E  +    
Sbjct: 490 VSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREG-KVEEA 548

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           R +   +    +KP+  ++ ++IS   +  D   A+ + D++  +   PT   YNA++  
Sbjct: 549 RMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKC 608

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK 169
             + ++   A  +LKEM    + PD  T+  LI    N + +++
Sbjct: 609 LCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNVDTLVE 652


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 89/422 (21%), Positives = 176/422 (41%), Gaps = 53/422 (12%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           +  SY  +I   C+  ++   + + ++M + +  P+  T   I+HA      F   R + 
Sbjct: 283 NEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHAL-----FGNDRNLE 337

Query: 70  PMICHHNLK-----PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
            M   + ++     PN  T+  M+    K +  D +  +L+++ E  L+P+   YNA++ 
Sbjct: 338 GMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIR 397

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQL-KSAGGQITK 183
           GY  +  ++ AL +L  ME  N +P+ +T++ LI   S  + + K    L K    ++T 
Sbjct: 398 GYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTP 457

Query: 184 --YVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
               + +LI+     G F+ A +++ L  E  +       S  +  L    R  +A  ++
Sbjct: 458 SLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLF 517

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQ 300
             +KE G         ALI+     G+++  I LLE +H  D            C+    
Sbjct: 518 NSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSED------------CL--PN 563

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS 360
            S+   L+  +  + K                        VQ GL +++ +  ++G+ P+
Sbjct: 564 SSTYNSLIYGVCKEGK------------------------VQEGLSMVENMS-KMGVKPT 598

Query: 361 RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420
                 L+   +   D   A+ ++ +  + G   +V +Y      +  SGN K A  +++
Sbjct: 599 VATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMA 658

Query: 421 KM 422
           +M
Sbjct: 659 RM 660



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 113/248 (45%), Gaps = 4/248 (1%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++TPS  +Y  LI   C       A  +++ + +  LVP   T +  +    +S      
Sbjct: 454 KLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEA 513

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             ++  +    +K N   + ++I  + K    D A SLL+ +   + +P +S YN+++ G
Sbjct: 514 CDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYG 573

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQIT 182
             ++  VQ  L +++ M +  VKP   T++ LI     E D     + + Q+ S G +  
Sbjct: 574 VCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPD 633

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
            Y + A I+ Y T G  ++A  ++    E  V   S   + L+SA    G   DA  V +
Sbjct: 634 VYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLK 693

Query: 242 EIKEAGCN 249
            + +AGC+
Sbjct: 694 RMLDAGCD 701



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 131/286 (45%), Gaps = 12/286 (4%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVRR 67
           P+  +Y  ++   C   K+  +  ++ +M++  LVPS  T N+++   CEE         
Sbjct: 352 PNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEG-RIEAALE 410

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           I  ++  +N +PN  T+  +I    K K    A +LL  + E  L P+   YN+++    
Sbjct: 411 ILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQC 470

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKY 184
           +      A  +L  +++  + PD  T+S  I   C ++  E+    +  LK  G +  + 
Sbjct: 471 KAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEV 530

Query: 185 VFMALINAYTTCGEFEKARQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           ++ ALI+ +   G+ ++A  ++  + +E  + + S   S L+  +   G+  + + + E 
Sbjct: 531 MYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNS-LIYGVCKEGKVQEGLSMVEN 589

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGEL---NRLI-QLLEEVHDPDYW 284
           + + G          LIE +  EG+    NR+  Q++   H PD +
Sbjct: 590 MSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVY 635



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 1/158 (0%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           MH++ +  P+S++Y  LI   C   KV   L +VE M +  + P+  T   ++       
Sbjct: 555 MHSE-DCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREG 613

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           +F+   R++  +     KP+  T+ + I       +   A  ++  + E  +MP +  Y 
Sbjct: 614 DFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYT 673

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            +++ Y R      A  VLK M  A   P    ++ LI
Sbjct: 674 LLISAYERLGLAYDAFNVLKRMLDAGCDPSHPIWNNLI 711



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 79/423 (18%), Positives = 160/423 (37%), Gaps = 42/423 (9%)

Query: 27  VHVALDVVEQMVQGE----LVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSE 82
           +   LD + QM + +       S  + N +L         + ++R+Y  + +  + PN  
Sbjct: 156 IRFLLDFLRQMNRDDNDIKFKLSVRSYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIY 215

Query: 83  TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM 142
           T  +M++   K+ +   A   +  + +  L P +  Y +++ GY R  DV  A  V   M
Sbjct: 216 TLNTMVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMM 275

Query: 143 EQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEF 199
                + +  +++ +IH       I   I  +++++      T   +  +I+A      F
Sbjct: 276 PNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHAL-----F 330

Query: 200 EKARQV-VLDAEIPVKSRS-----EVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPR 253
              R +  +D    ++ RS        + +V A+    +  ++  +  E+ E G  L P 
Sbjct: 331 GNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKG--LVPS 388

Query: 254 AVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCR--------LILHCVRFKQLSS 303
            V   ALI     EG +   +++L  +   +      CR        LI    + K +  
Sbjct: 389 VVTYNALIRGYCEEGRIEAALEILGLMESNN------CRPNERTYNELICGFSKRKHVHK 442

Query: 304 ATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKC 363
           A  LL ++ +      +        + C+    D         LL  +K E GL P +  
Sbjct: 443 AMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDS-----AYKLLDLLK-ENGLVPDQWT 496

Query: 364 LDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMP 423
               +     ++ ++ A  ++   +  G+  N + Y  +      +G    A  LL +M 
Sbjct: 497 YSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMH 556

Query: 424 KDD 426
            +D
Sbjct: 557 SED 559


>gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Cucumis sativus]
          Length = 637

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 89/412 (21%), Positives = 171/412 (41%), Gaps = 22/412 (5%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHH-NLKPNSETFR 85
           V+ AL V  Q+   +  P+    N+++           +  +Y  IC   N  P++ T+ 
Sbjct: 175 VNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYS 234

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           ++IS   K++ +D A+ L D++KE  L PT  +Y  I+A YF+   V+ AL +++EM+  
Sbjct: 235 ALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGK 294

Query: 146 NVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
              P   T++ LI         +D    +  +   G +    +   LIN     G  E A
Sbjct: 295 GCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDA 354

Query: 203 RQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE 260
            ++   +D+     +     + + +   S    S+A + +E++K  G          LI+
Sbjct: 355 LKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILID 414

Query: 261 HLNSEGELNRLIQLLEEVHDPDY--WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDD 318
                  + + + LLEE+ +  +       C LI    R K+  +A +L ++LK+     
Sbjct: 415 GFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRS 474

Query: 319 E----MAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNA 374
                  M  HF          +   +   +DL   +K +LG  P     + L+   + A
Sbjct: 475 SARVYAVMIKHFG---------NCGRLSDAVDLFCEMK-KLGCSPDVYTYNALMSGMIRA 524

Query: 375 RDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDD 426
             +  AH + +     G   ++ S+  +      +G  K A ++ +KM + +
Sbjct: 525 GMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESE 576



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/208 (17%), Positives = 90/208 (43%), Gaps = 3/208 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I PSS +Y  LI   C   +V  AL ++E+M +    P      S++ +   +  +    
Sbjct: 402 IAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAAN 461

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +  +  + ++  +  MI           A  L  ++K++   P    YNA+M+G 
Sbjct: 462 ELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALMSGM 521

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
            R   +  A  +++ M +    PD ++ + +++        +  I+ + ++K +      
Sbjct: 522 IRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDA 581

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEI 211
             +  +++  +  G FE A +++ + ++
Sbjct: 582 VSYNTILSCLSRAGMFEMAAKLMREMKL 609



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 81/190 (42%), Gaps = 9/190 (4%)

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM-EQANVKPDS 151
           K K  + A S+   +K     PTA++YN ++     +   +    +  E+  + N  PD+
Sbjct: 171 KAKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDT 230

Query: 152 QTFSYLIHNCSNEED---IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
            T+S LI      E      + ++++K  G   T+ ++  ++  Y    + E A ++V  
Sbjct: 231 ITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLV-- 288

Query: 209 AEIPVKSRSE---VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
            E+  K  +      + L+  L   GR  DA  ++  + + GC  +   +  LI  L   
Sbjct: 289 EEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRA 348

Query: 266 GELNRLIQLL 275
           G L   ++L 
Sbjct: 349 GRLEDALKLF 358


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 98/428 (22%), Positives = 184/428 (42%), Gaps = 59/428 (13%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSIL------HACEESY 60
           + P+  +Y  LI   C L ++  A  +++QM +   +  T T N ++      H  EE++
Sbjct: 379 VQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAF 438

Query: 61  -EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMY 119
              N +R+         + PN  T+  +I+   +I + + A  LL+ +    L P A +Y
Sbjct: 439 LLLNEMRK-------GGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVY 491

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLKS 176
             +++GY R+     A   LK+M + N+ PD   ++ LI   SN    ++ I+YY+++  
Sbjct: 492 APLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLE 551

Query: 177 AGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDA 236
            G Q   + +  LI+ Y+  G  EKA Q                  L+  + + G   + 
Sbjct: 552 KGFQPNDFTYGGLIHGYSMAGNLEKAEQ------------------LLHQMLNSGLNPND 593

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCV 296
            I Y +I E              +  N E   + L  +LE+   PD  + G   +++H +
Sbjct: 594 FI-YAQILE-----------GYFKSDNLEKVSSTLKSMLEKGLMPDNRLYG---IVIHNL 638

Query: 297 RFK-QLSSATDLLKQL-KDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDE 354
                + +A  +L  + K+    D +      S  FC+ A     D++  + LL  +  +
Sbjct: 639 SSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISG-FCKAA-----DMEKAVGLLDEMAKK 692

Query: 355 LGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKS 414
            G+ P   C + L+     + D+  A  I+      GLP N ++Y  +   +  +G+ + 
Sbjct: 693 -GIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRD 751

Query: 415 ASKLLSKM 422
           A  L ++M
Sbjct: 752 AIDLYNEM 759



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 92/432 (21%), Positives = 177/432 (40%), Gaps = 67/432 (15%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSIL------HACEESY 60
           I+P   +Y  LI   C +  +  A  VVE+M +     +  T N+++       A EE++
Sbjct: 239 ISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAF 298

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
            +      Y ++      P+  T+ ++I+   K    D A  LLD++    LMP   +Y+
Sbjct: 299 GYKKEMEDYGLV------PDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYS 352

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQ 180
            ++ G+ R+ +   A  ++KEM  A V+P+  T+  LI        + +    LK    Q
Sbjct: 353 TLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILK----Q 408

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
           +TK  +MA    Y           +V++  +   ++ E                 A ++ 
Sbjct: 409 MTKIGYMADTMTY----------NLVIEGHLRQHNKEE-----------------AFLLL 441

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV----HDPDYWMDGCCRLILHCV 296
            E+++ G +        +I  L   GE  R   LLE++      P+ ++     LI    
Sbjct: 442 NEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFV--YAPLISGYC 499

Query: 297 RFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKD--E 354
           R    S A + LK++  +    ++   Y ++ +   ++     D     + +++  +  E
Sbjct: 500 REGSFSLACETLKKMTRENLTPDL---YCYNSLIIGLSNVGKMD-----EAIEYYDEMLE 551

Query: 355 LGLPPSRKCLDFLLGACVN----ARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASG 410
            G  P+    DF  G  ++    A +L++A  +  +  N+GL  N   Y  + + +  S 
Sbjct: 552 KGFQPN----DFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSD 607

Query: 411 NRKSASKLLSKM 422
           N +  S  L  M
Sbjct: 608 NLEKVSSTLKSM 619



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 62/316 (19%), Positives = 127/316 (40%), Gaps = 11/316 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           +TP    Y  LI    ++ K+  A++  ++M++    P+  T   ++H    +       
Sbjct: 519 LTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAE 578

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           ++   + +  L PN   +  ++    K  + +   S L  + E  LMP   +Y  ++   
Sbjct: 579 QLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNL 638

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
                +Q A+ VL  +E+  + PDS  +  LI      ++ E  +   +++   G +   
Sbjct: 639 SSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGI 698

Query: 184 YVFMALINAYTTCGEFEKARQV---VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
             + ALI+ +    +   AR +   ++   +P    +   + L+      G   DAI +Y
Sbjct: 699 SCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVT--YTTLIDGYCKAGDIRDAIDLY 756

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILH--CVRF 298
            E+   G   +      L    ++ G+L + + + EE+    Y +      ++H  C R 
Sbjct: 757 NEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYAIISSFNTLVHGFCKRG 816

Query: 299 KQLSSATDLLKQLKDK 314
           K L      L  + DK
Sbjct: 817 K-LQETVKFLHVMMDK 831



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/411 (20%), Positives = 169/411 (41%), Gaps = 28/411 (6%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           +V    +VV  M    L PS    N +L     +   +L+ ++   +    + P+  T+ 
Sbjct: 188 RVRDGAEVVLLMKDLGLAPSLRCCNGLLKDLLRADALDLLWKVRGFMEGAGISPDVYTYS 247

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           ++I    K++D +SA  ++++++E         YN ++ G  R   ++ A    KEME  
Sbjct: 248 TLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEMEDY 307

Query: 146 NVKPDSQTFSYLIHN-CS-NEEDIIK-YYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
            + PD  T+  +I+  C     D  K   +++  AG      V+  LI+ +   G  ++A
Sbjct: 308 GLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEA 367

Query: 203 RQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE- 260
            ++V + +   V+        L+  L   GR   A  + +++ + G   +      +IE 
Sbjct: 368 FKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEG 427

Query: 261 HL---NSEGELNRLIQLLEEVHDPDYW-----MDGCCRLILHCVRFKQLSSATDLLKQL- 311
           HL   N E     L ++ +    P+ +     ++G C++        +   A+ LL+Q+ 
Sbjct: 428 HLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQI-------GESERASGLLEQMI 480

Query: 312 KDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGAC 371
            D  K +        S  +C+  +       +  + L+ +  E  L P   C + L+   
Sbjct: 481 ADGLKPNAFVYAPLISG-YCREGS-----FSLACETLKKMTRE-NLTPDLYCYNSLIIGL 533

Query: 372 VNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
            N   +  A   + E    G   N  +Y  +   +  +GN + A +LL +M
Sbjct: 534 SNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQM 584



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 107/254 (42%), Gaps = 44/254 (17%)

Query: 33  VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92
            ++ M++  L+P       ++H    S        +  +I  + L P+S  + S+IS   
Sbjct: 615 TLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFC 674

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG--------------------------- 125
           K  D + A  LLD++ +  + P  S YNA++ G                           
Sbjct: 675 KAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCV 734

Query: 126 --------YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQL 174
                   Y +  D++ A+ +  EM    V PD+  +S L   CSN  D+   +   E++
Sbjct: 735 TYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEM 794

Query: 175 KSAGGQITKYVFMALINAYTTCGEFE---KARQVVLDAEIPVKSRSEVKSALVSALASHG 231
            + G  I    F  L++ +   G+ +   K   V++D +I V S   V++ +V  L   G
Sbjct: 795 IARGYAIIS-SFNTLVHGFCKRGKLQETVKFLHVMMDKDI-VPSLLTVEN-IVIGLGEAG 851

Query: 232 RTSDAIIVYEEIKE 245
           + S+A  ++ E+++
Sbjct: 852 KLSEAHTIFVELQQ 865


>gi|218193284|gb|EEC75711.1| hypothetical protein OsI_12542 [Oryza sativa Indica Group]
          Length = 1031

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 121/248 (48%), Gaps = 7/248 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P + +Y  L+   C   K+  AL +++ M++  LVP T     +L+      +     
Sbjct: 630 ILPDTYTYTILLDGFCKRGKIVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAAS 689

Query: 67  RIYP-MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            ++  +IC   L  +   + SM++  +K    +    L+ ++ E  + P+++ YN +M G
Sbjct: 690 YMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMHG 749

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQ--LKSAGGQ 180
           Y +K  +   L + ++M +  +KPD+ T+  LI         E  +K+ E+  L+ +G Q
Sbjct: 750 YIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEESGLQ 809

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEV-KSALVSALASHGRTSDAIIV 239
                ++ALINA    G+ + A ++  D +      SEV +S++V  L   G+  +AIIV
Sbjct: 810 PKHTHYIALINAKCRVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIV 869

Query: 240 YEEIKEAG 247
           +  I  AG
Sbjct: 870 FSSIMRAG 877



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/287 (20%), Positives = 119/287 (41%), Gaps = 43/287 (14%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNL 64
           E+ PSSASY  L+       ++   L +   MV+  + P   T   ++   CE       
Sbjct: 735 EVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIA 794

Query: 65  VRRIYPMICHHN-LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
           V+ +  M+   + L+P    + ++I+   ++ D D A+ L +D+K + ++P+    ++I+
Sbjct: 795 VKFLEKMVLEESGLQPKHTHYIALINAKCRVGDIDGAFELKEDMKALGVVPSEVAESSIV 854

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQ 180
            G  +   V+ A++V   + +A + P   TF+ L+H    E   +D     + ++S G +
Sbjct: 855 RGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESCGLK 914

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
           +    +                                  + L++ L +     DA+ +Y
Sbjct: 915 VDVVTY----------------------------------NVLITGLCNKKCICDALDLY 940

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDY 283
           EE+K  G        I L   + + G +    +LL+++ D    P Y
Sbjct: 941 EEMKSKGLLPNITTYITLTGAMYATGTMQDGEKLLKDIEDRGIVPSY 987



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 88/210 (41%), Gaps = 35/210 (16%)

Query: 43  VPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYS 102
           +P+  T N+IL+   +        RI   +  + ++ +  T+  MI    K+K    AY 
Sbjct: 261 LPNAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYL 320

Query: 103 LLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS 162
           LL  ++E+NL P    YN ++ G+F +  +  A+ +  +M + ++KP   T++       
Sbjct: 321 LLKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYT------- 373

Query: 163 NEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSA 222
                                    ALI+ Y   G  ++AR+V+ + +I      EV  A
Sbjct: 374 -------------------------ALIDGYCRNGRTDEARRVLYEMQITGVRPREVSKA 408

Query: 223 --LVSALASHGRTSDAIIVYEEIKEAGCNL 250
             ++  + + G   D +I Y  +    C +
Sbjct: 409 KQILKCMLADGIDPD-VITYSALINGMCKM 437



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 84/447 (18%), Positives = 180/447 (40%), Gaps = 41/447 (9%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  +I   C L +   A  ++++M +  L P   + N+++H      + NL   I+  +
Sbjct: 301 TYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQM 360

Query: 73  CHHNLKPNSETFRSMIS--------------------LNVKIKDFDSAYSLLDDLKEMNL 112
              +LKP+  T+ ++I                       V+ ++   A  +L  +    +
Sbjct: 361 LRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPREVSKAKQILKCMLADGI 420

Query: 113 MPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIK 169
            P    Y+A++ G  +   +     +L  M+++ V P++  ++ L+       + ++ +K
Sbjct: 421 DPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEALK 480

Query: 170 YYEQLKSAGGQITKYVFMALINAYTTCG---EFEKARQVVLDAEIPVKSRSEVKSALVSA 226
           Y+  +  +G      +  AL+ ++   G   E E+ +Q +   +I     S   + ++ +
Sbjct: 481 YFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVASF--NCIIDS 538

Query: 227 LASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNR----LIQLLEEVHDPD 282
               G   +A  VY+ +   G   +     +L+  L   G L +    ++ LLE+    D
Sbjct: 539 YCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAID 598

Query: 283 YWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQ 342
                   L++   +   L  A DL +++  +    +        + FC+     P    
Sbjct: 599 EKTLN--TLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKIVP---- 652

Query: 343 IGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYE-NAGLPYNVLSYLW 401
             L LLQ + ++ GL P       LL   VN   +K A  +++E     GL  + ++Y  
Sbjct: 653 -ALILLQMMLEK-GLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNS 710

Query: 402 MYKAFLASGNRKSASKLLSKMPKDDPH 428
           M   +L  G      +L+  M +++ +
Sbjct: 711 MMNGYLKGGQINEIERLMRNMHENEVY 737



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/281 (18%), Positives = 116/281 (41%), Gaps = 5/281 (1%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           ++++I+   AS+  +I   C    V  A  V + MV+    P   T  S+L    +    
Sbjct: 521 SRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHL 580

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
              +     +       + +T  +++    K    D A  L + +   N++P    Y  +
Sbjct: 581 VQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTIL 640

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI----IKYYEQLKSAG 178
           + G+ ++  +  AL++L+ M +  + PD+  ++ L++   NE  +      + E +   G
Sbjct: 641 LDGFCKRGKIVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEG 700

Query: 179 GQITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAI 237
                  + +++N Y   G+  +  +++ +  E  V   S   + L+      G+ S  +
Sbjct: 701 LYADCIAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTL 760

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            +Y ++ + G   +      LI  L   G +   ++ LE++
Sbjct: 761 YLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKM 801



 Score = 45.1 bits (105), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 28/145 (19%), Positives = 64/145 (44%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           L + PS  +   ++   C   KV  A+ V   +++  +VP+  T  +++H   + ++ + 
Sbjct: 841 LGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDD 900

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
              +  ++    LK +  T+  +I+     K    A  L +++K   L+P  + Y  +  
Sbjct: 901 AFHLKQLMESCGLKVDVVTYNVLITGLCNKKCICDALDLYEEMKSKGLLPNITTYITLTG 960

Query: 125 GYFRKKDVQGALMVLKEMEQANVKP 149
             +    +Q    +LK++E   + P
Sbjct: 961 AMYATGTMQDGEKLLKDIEDRGIVP 985


>gi|449484944|ref|XP_004157025.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g16010-like [Cucumis sativus]
          Length = 637

 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 88/421 (20%), Positives = 170/421 (40%), Gaps = 40/421 (9%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHH-NLKPNSETFR 85
           V+ AL V  Q+   +  P+    N+++           +  +Y  IC   N  P++ T+ 
Sbjct: 175 VNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYS 234

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           ++IS   K++ +D A+ L D++KE  L PT  +Y  I+A YF+   V+ AL +++EM+  
Sbjct: 235 ALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGK 294

Query: 146 NVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
              P   T++ LI         +D    +  +   G +    +   LIN     G  E A
Sbjct: 295 GCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDA 354

Query: 203 RQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE 260
            ++   +D+     +     + + +   S    S+A + +E++K  G          LI+
Sbjct: 355 LKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILID 414

Query: 261 HLNSEGELNRLIQLLEEVHDPDY--WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDD 318
                  + + + LLEE+ +  +       C LI    R K+  +A +L ++LK+     
Sbjct: 415 GFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRS 474

Query: 319 E----MAMEYHFS---------EIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLD 365
                  M  HF          ++FC+                    ++LG  P     +
Sbjct: 475 SARVYAVMIKHFGNCGRLSDAVDLFCE-------------------XEKLGCSPDVYTYN 515

Query: 366 FLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKD 425
            L+   + A  +  AH + +     G   ++ S+  +      +G  K A ++ +KM + 
Sbjct: 516 ALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKES 575

Query: 426 D 426
           +
Sbjct: 576 E 576



 Score = 46.2 bits (108), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 36/208 (17%), Positives = 89/208 (42%), Gaps = 3/208 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I PSS +Y  LI   C   +V  AL ++E+M +    P      S++ +   +  +    
Sbjct: 402 IAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAAN 461

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +  +  + ++  +  MI           A  L  + +++   P    YNA+M+G 
Sbjct: 462 ELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEXEKLGCSPDVYTYNALMSGM 521

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
            R   +  A  +++ M +    PD ++ + +++        +  I+ + ++K +      
Sbjct: 522 IRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDA 581

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEI 211
             +  +++  +  G FE A +++ + ++
Sbjct: 582 VSYNTILSCLSRAGMFEMAAKLMREMKL 609



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 81/190 (42%), Gaps = 9/190 (4%)

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM-EQANVKPDS 151
           K K  + A S+   +K     PTA++YN ++     +   +    +  E+  + N  PD+
Sbjct: 171 KAKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDT 230

Query: 152 QTFSYLIHNCSNEED---IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
            T+S LI      E      + ++++K  G   T+ ++  ++  Y    + E A ++V  
Sbjct: 231 ITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLV-- 288

Query: 209 AEIPVKSRSE---VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
            E+  K  +      + L+  L   GR  DA  ++  + + GC  +   +  LI  L   
Sbjct: 289 EEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRA 348

Query: 266 GELNRLIQLL 275
           G L   ++L 
Sbjct: 349 GRLEDALKLF 358


>gi|297599210|ref|NP_001046823.2| Os02g0468500 [Oryza sativa Japonica Group]
 gi|47497324|dbj|BAD19365.1| fertility restorer homologue A-like [Oryza sativa Japonica Group]
 gi|125582052|gb|EAZ22983.1| hypothetical protein OsJ_06677 [Oryza sativa Japonica Group]
 gi|255670892|dbj|BAF08737.2| Os02g0468500 [Oryza sativa Japonica Group]
          Length = 506

 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 130/279 (46%), Gaps = 11/279 (3%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGE-LVPSTETINSILHACEESYEFNL 64
           ++ PS  +Y  LI   C   ++  A ++ E M++ + +VP   T N ++       +   
Sbjct: 225 DVRPSLVTYSTLIGGLCRGAQMKEAFELFEDMIEKDRIVPDQLTYNLLIGGFCRLGQVEK 284

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
            + I+  +  +  +PN+  + ++I+ + K  + ++A  + +++    + P A  Y +++ 
Sbjct: 285 AQSIFGFMRKNECEPNAFNYATLINGHCKKGEVEAARGVFEEMIRSGVQPDAVSYTSLVG 344

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQI 181
              R  +V   + +++EM Q   K D  T++ L+     +  I   +   E+L S G Q+
Sbjct: 345 CLCRHGNVDEGINLVQEMWQKGCKADVVTYNLLLEGLCKDRRIAEAVTLLEKLPSEGVQL 404

Query: 182 TKYVFMALINAYTTCGEFEKAR----QVVLDAEIPVKSRSEVKSALVSALASHGRTSDAI 237
               +  ++N   +CGE EKA      ++    +P  + S +   L+  L   GR SDA 
Sbjct: 405 NVASYRIVMNCLCSCGEMEKAAGLLGMMLGRGFVPHYAASNM---LLIGLCDVGRVSDAT 461

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276
           +    + + G   E R    LIE +  E +L R I+LL+
Sbjct: 462 VTLYGLVDTGFMPEARCWARLIESVFRERKLRRSIELLD 500



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 66/317 (20%), Positives = 135/317 (42%), Gaps = 24/317 (7%)

Query: 78  KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMN---LMPTASMYNAIMAGYFRKKDVQG 134
           +PN+  +  +I   VK  D  +A+ + D++++MN   + P+   Y+ ++ G  R   ++ 
Sbjct: 189 QPNTCIYNILIKHYVKKGDLGTAFQVFDEMRKMNCADVRPSLVTYSTLIGGLCRGAQMKE 248

Query: 135 ALMVLKEM-EQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK-------YVF 186
           A  + ++M E+  + PD  T++ LI         +   E+ +S  G + K       + +
Sbjct: 249 AFELFEDMIEKDRIVPDQLTYNLLIGGFCR----LGQVEKAQSIFGFMRKNECEPNAFNY 304

Query: 187 MALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
             LIN +   GE E AR V  +     V+  +   ++LV  L  HG   + I + +E+ +
Sbjct: 305 ATLINGHCKKGEVEAARGVFEEMIRSGVQPDAVSYTSLVGCLCRHGNVDEGINLVQEMWQ 364

Query: 246 AGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD-GCCRLILHCV-RFKQLSS 303
            GC  +      L+E L  +  +   + LLE++      ++    R++++C+    ++  
Sbjct: 365 KGCKADVVTYNLLLEGLCKDRRIAEAVTLLEKLPSEGVQLNVASYRIVMNCLCSCGEMEK 424

Query: 304 ATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKC 363
           A  LL  +  +      A         C +       V +      +   + G  P  +C
Sbjct: 425 AAGLLGMMLGRGFVPHYAASNMLLIGLCDVGRVSDATVTL------YGLVDTGFMPEARC 478

Query: 364 LDFLLGACVNARDLKRA 380
              L+ +    R L+R+
Sbjct: 479 WARLIESVFRERKLRRS 495


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 101/458 (22%), Positives = 173/458 (37%), Gaps = 80/458 (17%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K++  P+  SY  LI   C   ++  AL V + M +  L P+  T+N ++    ++   +
Sbjct: 404 KMDAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLD 463

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               I+  + H    P+S TF S+I    +    + AY L + + +    P A +Y +++
Sbjct: 464 EACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLI 523

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK 183
             +F+    +    + KEM      PD                                 
Sbjct: 524 RNFFKCGRKEDGHKIYKEMMHRGCSPD--------------------------------- 550

Query: 184 YVFMALINAYTTC----GEFEKARQVVLDAEIPVKSRS-EVK--SALVSALASHGRTSDA 236
              + L+N Y  C    GE EK R   L  EI  +  + +V+  S L+  L   G + D 
Sbjct: 551 ---LMLLNNYMDCVFKAGEIEKGR--ALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDT 605

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDYWMDGCCRLI 292
             ++ E+KE G +L+ RA   +I+     G++N+  QLLEE+      P     G   +I
Sbjct: 606 YKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYG--SVI 663

Query: 293 LHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDV------QIGLD 346
               +  +L  A  L ++ K K  D  + +     + F ++   D   +      Q GL 
Sbjct: 664 DGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLT 723

Query: 347 ---------LLQFIKDE--------------LGLPPSRKCLDFLLGACVNARDLKRAHLI 383
                    L   +K E              L  PP+      ++      R   +A + 
Sbjct: 724 PNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVF 783

Query: 384 WKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSK 421
           W+E +  GL  N ++Y  M       GN   A  L  +
Sbjct: 784 WQEMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFER 821



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 88/187 (47%), Gaps = 13/187 (6%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y  LI     + ++  A  ++E+++Q  L P+T T N +L A  ++ E +       ++C
Sbjct: 694 YSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEID-----EALVC 748

Query: 74  HHNLK-----PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
             N+K     PN  T+  M++   K++ F+ A+    ++++  L P    Y  +++G  R
Sbjct: 749 FQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLAR 808

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY---EQLKSAGGQITKYV 185
             +V  A  + +  + +   PDS  ++ +I   SN    +  Y   E+ +  G +I    
Sbjct: 809 VGNVLEAKDLFERFKSSGGIPDSACYNAMIEGLSNANKAMDAYILFEETRLKGCRIYSKT 868

Query: 186 FMALINA 192
            + L++A
Sbjct: 869 CVVLLDA 875



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 84/403 (20%), Positives = 159/403 (39%), Gaps = 48/403 (11%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           KV +A     ++    LVP   T  S++    ++   +    ++  +  +   P    + 
Sbjct: 287 KVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYN 346

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           +MI     +  F+ AYSLL+  K    +P+   YN I+    RK  V+ AL +L+ M+  
Sbjct: 347 TMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAMKM- 405

Query: 146 NVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
           +  P+  +++ LI         E  +K  + +K AG          +I+        ++A
Sbjct: 406 DAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEA 465

Query: 203 RQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALI 259
             + L  +  V +   V   +L+  L  HG+ +DA ++YE++ ++G    P AV+  +LI
Sbjct: 466 CSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSG--QTPNAVVYTSLI 523

Query: 260 EHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDE 319
            +    G      ++ +E+        GC                             D 
Sbjct: 524 RNFFKCGRKEDGHKIYKEMMH-----RGC---------------------------SPDL 551

Query: 320 MAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKR 379
           M +  +   +F         +++ G  L + IK + GL P  +    L+   V     K 
Sbjct: 552 MLLNNYMDCVF------KAGEIEKGRALFEEIKAQ-GLTPDVRSYSILIHGLVKGGFSKD 604

Query: 380 AHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
            + ++ E +  GL  +  +Y  +   F  SG    A +LL +M
Sbjct: 605 TYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEM 647



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 68/313 (21%), Positives = 133/313 (42%), Gaps = 19/313 (6%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVE---QMVQGELVPSTETINSILHACEESYEFN 63
           +TP   SY  LI     L+K   + D  +   +M +  L   T   N ++    +S + N
Sbjct: 582 LTPDVRSYSILIH---GLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVN 638

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              ++   +    L+P   T+ S+I    KI   D AY L ++ K   +     +Y++++
Sbjct: 639 KAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLI 698

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQ 180
            G+ +   +  A ++L+E+ Q  + P++ T++ L+      E+I   +  ++ +K+    
Sbjct: 699 DGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCP 758

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEI---PVKSRSEVKSALVSALASHGRTSDAI 237
             +  +  ++N      +F KA   V   E+    +K  +   + ++S LA  G   +A 
Sbjct: 759 PNEVTYSIMVNGLCKVRKFNKA--FVFWQEMQKQGLKPNTITYTTMISGLARVGNVLEAK 816

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVR 297
            ++E  K +G   +     A+IE L++  +      L EE       + GC      CV 
Sbjct: 817 DLFERFKSSGGIPDSACYNAMIEGLSNANKAMDAYILFEETR-----LKGCRIYSKTCVV 871

Query: 298 FKQLSSATDLLKQ 310
                   D L+Q
Sbjct: 872 LLDALHKADCLEQ 884



 Score = 46.2 bits (108), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 74/406 (18%), Positives = 161/406 (39%), Gaps = 33/406 (8%)

Query: 33  VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92
           ++E+M      PS  T   ++ +  +S +      +   +     +P    + ++I    
Sbjct: 154 ILEEMSMAGFGPSNNTCIEMVASFVKSRKLREAFGVIETMRKFKFRPAYSAYTTLIGALS 213

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
              + D   +LL  ++E+    T  ++  ++  + R+  V  AL +L EM+  +   D  
Sbjct: 214 AAHEADPMLTLLRQMQEIGYEVTVHLFTTLICVFAREGRVDAALSLLDEMKSNSFNADLV 273

Query: 153 TFSYLIHNCSNEEDII----KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV-- 206
            ++  I +C  +   +    K++ +LKS G       F ++I         ++A ++   
Sbjct: 274 LYNVCI-DCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEE 332

Query: 207 LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
           LD+   V       + ++    S G+ ++A  + E  K  GC     A   ++  L  +G
Sbjct: 333 LDSNKSVPCVYAYNT-MIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKG 391

Query: 267 ELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHF 326
           ++   +++LE +      MD    L  + +    L  A +L   LK +   D M     F
Sbjct: 392 KVEEALRILEAMK-----MDAAPNLTSYNILIDMLCKAGELEAALKVQ---DSMKEAGLF 443

Query: 327 SEI---------FCQIATTDPP-DVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARD 376
             I          C+    D    + +GLD       ++  P S      + G   + + 
Sbjct: 444 PNIITVNIMIDRLCKAQRLDEACSIFLGLD------HKVCTPDSVTFCSLIDGLGRHGK- 496

Query: 377 LKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           +  A++++++  ++G   N + Y  + + F   G ++   K+  +M
Sbjct: 497 VNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEM 542


>gi|242095042|ref|XP_002438011.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
 gi|241916234|gb|EER89378.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
          Length = 1443

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 64/292 (21%), Positives = 136/292 (46%), Gaps = 7/292 (2%)

Query: 1   MHAKLEITPSSASYKKLITY--SCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEE 58
           MH +  I P   S+  LI        L   VALD++ ++ Q  L P   T N+++ AC +
Sbjct: 247 MHDR-GIDPDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQ 305

Query: 59  SYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM 118
           S        ++  +     +P+  T+ +M+S++ +    + A  L  +L E   MP A  
Sbjct: 306 SSNLEDAVTVFEEMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFGELVEKGFMPDAVT 365

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLK 175
           YN+++  + ++ +V       +E+ +A  K +  T++ +IH        +  +  Y++++
Sbjct: 366 YNSLLYAFAKEGNVDKVEHTCEELVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMR 425

Query: 176 SAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTS 234
           + G       +  +I++     +  +A +V+ D A+  +K      SAL+ A A  GR +
Sbjct: 426 AVGCTPDAVTYTVMIDSLGKMDKIAEAGKVLEDMADAGLKPTLVAFSALICAYAKGGRRA 485

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
           DA   ++ +  +G   +  A + +++     GE  ++++L   + + +Y  D
Sbjct: 486 DAEKTFDCMIASGVKPDRLAYLVMLDVFARSGETEKMLRLYRTMMNDNYRPD 537



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/256 (19%), Positives = 112/256 (43%), Gaps = 9/256 (3%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           ALD  E + +    P++  +  +L     + + ++   ++            + F +M+ 
Sbjct: 173 ALDAFEWLARST-APASRAVAVVLGVLGRARQDSIAEEVFLRFAGEG--ATVQVFNAMMG 229

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQG--ALMVLKEMEQANV 147
           +  +   FD A  LLD + +  + P    +N ++    +   +    AL +L E+ Q+ +
Sbjct: 230 VYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSGL 289

Query: 148 KPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204
           +PD  T++ LI  C   SN ED +  +E++ ++  +   + + A+++ +  CG+ E+A +
Sbjct: 290 RPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMVSVHGRCGKAEEAER 349

Query: 205 VVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
           +  +  E      +   ++L+ A A  G         EE+ +AG          +I    
Sbjct: 350 LFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKNEITYNTMIHMYG 409

Query: 264 SEGELNRLIQLLEEVH 279
             G L+  + L +E+ 
Sbjct: 410 KMGRLDLAVGLYDEMR 425



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/201 (17%), Positives = 85/201 (42%), Gaps = 3/201 (1%)

Query: 9    PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
            P+   Y+ + +  C   +      ++ +M      P     NS+L+    +  F+   ++
Sbjct: 883  PNMHLYRSMTSLLCHHNRFRDVELMIAEMEGAGFKPDLSIFNSLLNMYTAAGNFDRTTQV 942

Query: 69   YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
            Y  I    L+P+ +T+ ++I +  +    +  ++LL+++ +  L P    Y +++A   +
Sbjct: 943  YQSILEAGLEPDEDTYNTLIVMYCRSLRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAK 1002

Query: 129  KKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITKYV 185
             +  + A  + +EM   + + +   +  ++    N  N          +K  G + T   
Sbjct: 1003 AELREQADQLFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIAT 1062

Query: 186  FMALINAYTTCGEFEKARQVV 206
               L+ +Y T G+  +A  V+
Sbjct: 1063 MHILMTSYGTAGQPHEAENVL 1083



 Score = 42.4 bits (98), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 60/324 (18%), Positives = 131/324 (40%), Gaps = 45/324 (13%)

Query: 33   VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL-- 90
            VV ++   +   S  T+  +L A  ++ +   V +IY  +      PN   +RSM SL  
Sbjct: 837  VVGELQDMDFKISKSTVLLMLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMTSLLC 896

Query: 91   ------NVKI---------------------------KDFDSAYSLLDDLKEMNLMPTAS 117
                  +V++                            +FD    +   + E  L P   
Sbjct: 897  HHNRFRDVELMIAEMEGAGFKPDLSIFNSLLNMYTAAGNFDRTTQVYQSILEAGLEPDED 956

Query: 118  MYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQL 174
             YN ++  Y R    +    +L EM +  + P  Q++  L+   +     E   + +E++
Sbjct: 957  TYNTLIVMYCRSLRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQLFEEM 1016

Query: 175  KSAGGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRT 233
            +S   Q+ + ++  ++  Y   G   KA  ++ +  E  ++        L+++  + G+ 
Sbjct: 1017 RSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQP 1076

Query: 234  SDAIIVYEEIKEAGCNLE--PRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC 289
             +A  V   +K +   +   P + +  A +++ + +  + +L+++  +  +PD+ +  C 
Sbjct: 1077 HEAENVLNSLKSSSLEVSTLPYSTVFDAYLKNGDYDLGIKKLLEMKRDGVEPDHQVWTC- 1135

Query: 290  RLILHCVRFKQLSSATDLLKQLKD 313
              I      +Q + A  LLK L+D
Sbjct: 1136 -FIRAASLCEQTADAILLLKSLQD 1158



 Score = 42.0 bits (97), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 77/389 (19%), Positives = 150/389 (38%), Gaps = 51/389 (13%)

Query: 80   NSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVL 139
            N   +  +I+  V+ + F  A  +  D++ + +  + ++Y +I++ Y +    + A  ++
Sbjct: 674  NCNLYEHLITCLVEAELFSEACQVFCDMQFIGIEASKNIYESIISTYCKLGFPETAHGLM 733

Query: 140  KEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQ-------LKSAGGQITKYVFMALINA 192
             +  Q+ +  +  +   +I         IK ++Q       L+ A G I + ++ ALI+A
Sbjct: 734  DDALQSGIPLNILSCRVIIIEAYGN---IKLWQQAEILVKGLRQASG-IDRRIWNALIHA 789

Query: 193  YTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEIKEAGCNL 250
            Y   G +EKAR  V D  I       V S   ++ AL   GR  +  +V  E+++    +
Sbjct: 790  YAESGLYEKAR-AVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVGELQDMDFKI 848

Query: 251  EPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD-----GCCRLILHCVRFK------ 299
                V+ +++     G++  ++++   +    Y  +         L+ H  RF+      
Sbjct: 849  SKSTVLLMLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMTSLLCHHNRFRDVELMI 908

Query: 300  ----------QLSSATDLLKQLKDKFKDDEMAMEYH-------------FSEIFCQIATT 336
                       LS    LL         D     Y              ++ +      +
Sbjct: 909  AEMEGAGFKPDLSIFNSLLNMYTAAGNFDRTTQVYQSILEAGLEPDEDTYNTLIVMYCRS 968

Query: 337  DPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNV 396
              P+   G  LL  +    GL P  +    LL A   A   ++A  +++E  +     N 
Sbjct: 969  LRPEE--GFTLLNEMGKR-GLTPKLQSYKSLLAASAKAELREQADQLFEEMRSKSYQLNR 1025

Query: 397  LSYLWMYKAFLASGNRKSASKLLSKMPKD 425
              Y  M K +  +GN   A  LL+ M +D
Sbjct: 1026 SIYHMMMKIYRNAGNHSKAENLLAVMKED 1054



 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 49/242 (20%), Positives = 101/242 (41%), Gaps = 18/242 (7%)

Query: 1    MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
            + A LE  P   +Y  LI   C  L+      ++ +M +  L P  ++  S+L A  ++ 
Sbjct: 947  LEAGLE--PDEDTYNTLIVMYCRSLRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAE 1004

Query: 61   EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
                  +++  +   + + N   +  M+ +     +   A +LL  +KE  + PT +  +
Sbjct: 1005 LREQADQLFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMH 1064

Query: 121  AIMAGYFRKKDVQGALMVLKEMEQANVK----PDSQTFSYLIHNCSNEEDIIKYYEQLKS 176
             +M  Y        A  VL  ++ ++++    P S  F   + N   +  I K  E +K 
Sbjct: 1065 ILMTSYGTAGQPHEAENVLNSLKSSSLEVSTLPYSTVFDAYLKNGDYDLGIKKLLE-MKR 1123

Query: 177  AGGQITKYVFMALINAYTTCGEFEKARQVVL--------DAEIPVKSRSEVKSALVSALA 228
             G +    V+   I A + C   E+    +L          ++P++  +E   +L+S +A
Sbjct: 1124 DGVEPDHQVWTCFIRAASLC---EQTADAILLLKSLQDCGFDLPIRLLTERTPSLLSEIA 1180

Query: 229  SH 230
            ++
Sbjct: 1181 NY 1182



 Score = 39.3 bits (90), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 32/167 (19%), Positives = 73/167 (43%), Gaps = 9/167 (5%)

Query: 33  VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92
           V + M++   +P+ +++N ++ A       + +  +   +   + K +  T   M+    
Sbjct: 802 VFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVGELQDMDFKISKSTVLLMLDAFA 861

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMY---NAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           K  D      + + +K    +P   +Y    +++  + R +DV+   +++ EME A  KP
Sbjct: 862 KAGDVFEVMKIYNGMKAAGYLPNMHLYRSMTSLLCHHNRFRDVE---LMIAEMEGAGFKP 918

Query: 150 DSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAY 193
           D   F+ L++      N +   + Y+ +  AG +  +  +  LI  Y
Sbjct: 919 DLSIFNSLLNMYTAAGNFDRTTQVYQSILEAGLEPDEDTYNTLIVMY 965


>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
 gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
 gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 819

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 101/462 (21%), Positives = 186/462 (40%), Gaps = 57/462 (12%)

Query: 7   ITPSSASYKKLITYSCDLLKVHV-ALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           I P + +Y  LIT  C    +H  A  V E+M          T N++L    +S+     
Sbjct: 275 IAPDAYTYNTLIT-CCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEA 333

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            ++   +  +   P+  T+ S+IS   +    D A  L + + E    P    Y  +++G
Sbjct: 334 MKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSG 393

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYL-------------------IHNCSNEED 166
           + R   V+ A+ + +EM  A  KP+  TF+                     I+ C    D
Sbjct: 394 FERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPD 453

Query: 167 IIKY-------------------YEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV-- 205
           I+ +                   ++++K AG    +  F  LI+AY+ CG FE+A  V  
Sbjct: 454 IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYR 513

Query: 206 -VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
            +LDA   V       + +++ALA  G    +  V  E+++  C        +L+    +
Sbjct: 514 RMLDAG--VTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYAN 571

Query: 265 EGELNRLIQLLEEVH----DPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEM 320
             E+  +  L EEV+    +P   +     L+L C +   L  A     +LK++    ++
Sbjct: 572 GKEIGLMHSLAEEVYSGVIEPRAVL--LKTLVLVCSKCDLLPEAERAFSELKERGFSPDI 629

Query: 321 AMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRA 380
                   I+ +        V     +L ++K E G  PS    + L+     + D  ++
Sbjct: 630 TTLNSMVSIYGRRQM-----VAKANGVLDYMK-ERGFTPSMATYNSLMYMHSRSADFGKS 683

Query: 381 HLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
             I +E    G+  +++SY  +  A+  +   + AS++ S+M
Sbjct: 684 EEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEM 725



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/250 (19%), Positives = 110/250 (44%), Gaps = 8/250 (3%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  L+    +  ++ +   + E++  G + P    + +++  C +        R 
Sbjct: 557 PNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERA 616

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +      P+  T  SM+S+  + +    A  +LD +KE    P+ + YN++M  + R
Sbjct: 617 FSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSR 676

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYV 185
             D   +  +L+E+    +KPD  +++ +I+  C N    D  + + +++++G       
Sbjct: 677 SADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVIT 736

Query: 186 FMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +   I +Y     FE+A  VV    +   +      +++V       R  +A +  E+++
Sbjct: 737 YNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLR 796

Query: 245 EAGCNLEPRA 254
               NL+P A
Sbjct: 797 ----NLDPHA 802



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 74/361 (20%), Positives = 154/361 (42%), Gaps = 41/361 (11%)

Query: 83  TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKE- 141
           ++ S+IS       +  A ++   ++E    PT   YN I+  + +       +  L E 
Sbjct: 210 SYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEK 269

Query: 142 MEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGE 198
           M+   + PD+ T++ LI  C   S  ++  + +E++K+AG    K  + AL++ Y     
Sbjct: 270 MKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHR 329

Query: 199 FEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIA 257
            ++A +V+ +  +   S S V  ++L+SA A  G   +A+ +  ++ E G   +      
Sbjct: 330 PKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTT 389

Query: 258 LIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKD 317
           L+      G++   + + EE+ +      GC            + +    +K   ++ K 
Sbjct: 390 LLSGFERAGKVESAMSIFEEMRNA-----GCK---------PNICTFNAFIKMYGNRGKF 435

Query: 318 DEMAMEYHFSEIFCQIATTD-PPDV-----------QIGLDL-LQFIKDEL---GLPPSR 361
            EM       +IF +I      PD+           Q G+D  +  +  E+   G  P R
Sbjct: 436 TEMM------KIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPER 489

Query: 362 KCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSK 421
           +  + L+ A       ++A  +++   +AG+  ++ +Y  +  A    G  + + K+L++
Sbjct: 490 ETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAE 549

Query: 422 M 422
           M
Sbjct: 550 M 550



 Score = 38.5 bits (88), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 2/110 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P   SY  +I   C   ++  A  +  +M    +VP   T N+ + +      F    
Sbjct: 695 IKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAI 754

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTA 116
            +   +  H  +PN  T+ S++    K+   D A   ++DL+  NL P A
Sbjct: 755 GVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLR--NLDPHA 802


>gi|32488707|emb|CAE03450.1| OSJNBa0088H09.8 [Oryza sativa Japonica Group]
          Length = 905

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 123/278 (44%), Gaps = 4/278 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I  ++ +Y  LI     L     A  + E+M++  L P     N ++ A  +    +   
Sbjct: 474 IKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAI 533

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            I   +    ++P++  FR +I       D  SA   LD ++    +PT   YNA++ G 
Sbjct: 534 CILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGL 593

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITK 183
            RK  VQ A+ VL +M  A + P+  T++ ++   +   DI K   Y+ ++K +G ++  
Sbjct: 594 VRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDV 653

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE-VKSALVSALASHGRTSDAIIVYEE 242
           Y++  L+ A    G  + A  V  +       R+  + + L+   A  G   +A  + ++
Sbjct: 654 YIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQ 713

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           +KE G         + I      G++ R  +++EE+ D
Sbjct: 714 MKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVD 751



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/392 (19%), Positives = 162/392 (41%), Gaps = 30/392 (7%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A ++V +M +  +    +  +S++H        N    ++  +     KP+  ++  +++
Sbjct: 392 AEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLN 451

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           L VKI     A S+  +++   +      Y+ ++ G+    D   A  + +EM ++ ++P
Sbjct: 452 LYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQP 511

Query: 150 DSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D   ++ LI       N +  I   E+++    Q +   F  +I  Y   G+ + A    
Sbjct: 512 DRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSA---- 567

Query: 207 LDAEIPVKSRSE------VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE 260
           LD  + +  RS         +AL+  L    +   A+ V +++  AG          ++ 
Sbjct: 568 LDT-LDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMR 626

Query: 261 HLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQLSSATDLLKQLKDKFKDD 318
              + G++ +  +   ++ +    +D      L+  C +  ++ SA  + +         
Sbjct: 627 GYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTR--------- 677

Query: 319 EMAMEYHFSEIFCQIATTDP----PDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNA 374
           EM+ +      F      D      DV    DL++ +K++ G+PP+       + AC  A
Sbjct: 678 EMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKED-GVPPNIHTYTSYINACCKA 736

Query: 375 RDLKRAHLIWKEYENAGLPYNVLSYLWMYKAF 406
            D++RA  + +E  + GL  NV +Y  + K +
Sbjct: 737 GDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGW 768



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/239 (20%), Positives = 104/239 (43%), Gaps = 4/239 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           PS  SY  L+     + KV  AL + ++M    +  + +T + +++     ++F     I
Sbjct: 441 PSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAI 500

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    L+P+   +  +I    K+ + D A  +L+ +++  + P+   +  I+ GY  
Sbjct: 501 FEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAV 560

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYV 185
             D++ AL  L  M ++   P   T++ LIH    +  +   +   +++  AG    ++ 
Sbjct: 561 AGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHT 620

Query: 186 FMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
           +  ++  Y   G+  KA +      E  +K    +   L+ A    GR   A+ V  E+
Sbjct: 621 YTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREM 679



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 82/396 (20%), Positives = 163/396 (41%), Gaps = 51/396 (12%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD---- 131
            ++PN+  F S++      +D   A S ++++K   L  T   Y+ +++G+ +  D    
Sbjct: 327 GIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSHQS 386

Query: 132 --VQGALMVLKEMEQANVKPDSQTFSYLIHNCS---NEEDIIKYYEQLKSAGGQITKYVF 186
             ++ A  +++EME+  +      +  ++H  +   NE   +  +E+LK  G + +   +
Sbjct: 387 GNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISY 446

Query: 187 MALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
             L+N Y   G+  KA  +  + E   +K  ++  S L++        ++A  ++EE+  
Sbjct: 447 GCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLR 506

Query: 246 AGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDP--------------DYWMDGCC 289
           +G  L+P   I   LIE     G ++R I +LE++                  Y + G  
Sbjct: 507 SG--LQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDM 564

Query: 290 RLILHCVRFKQLSSATD-------LLKQLKDKFKD-------DEMAM------EYHFSEI 329
           +  L  +   + S           L+  L  K K        D+M++      E+ ++ I
Sbjct: 565 KSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTII 624

Query: 330 FCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYEN 389
               A +   D+    +    IK E GL       + LL AC  +  ++ A  + +E   
Sbjct: 625 MRGYAASG--DIGKAFEYFTKIK-ESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSF 681

Query: 390 AGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKD 425
             +P N   Y  +   +   G+   A  L+ +M +D
Sbjct: 682 QKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKED 717



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 87/431 (20%), Positives = 167/431 (38%), Gaps = 92/431 (21%)

Query: 41  ELVPS-TETINSILHACEESYEFNLVRRIYPMICHHNL-KPNSETFRSMISLNVKIKDFD 98
           E +P  +  +++    C++S   +++   YP +    L +P+   F  MI    K  D  
Sbjct: 257 ERIPKLSGVVSAYFPLCKQS--LDVLDLTYPFLFKKLLHEPSRREFGLMIVYYAKRGDKH 314

Query: 99  SAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            A +  ++++   + P A ++ +++  Y   +D++GAL  ++EM+   ++    T+S LI
Sbjct: 315 HARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILI 374

Query: 159 ---------HNCSN-----------EEDIIK------------------------YYEQL 174
                    H   N           EED I                          +E+L
Sbjct: 375 SGFAKINDSHQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERL 434

Query: 175 KSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRT 233
           K  G + +   +  L+N Y   G+  KA  +  + E   +K  ++  S L++        
Sbjct: 435 KECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDF 494

Query: 234 SDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRL 291
           ++A  ++EE+  +G  L+P   I   LIE     G ++R I +LE               
Sbjct: 495 ANAFAIFEEMLRSG--LQPDRAIYNLLIEAFCKMGNMDRAICILE--------------- 537

Query: 292 ILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFI 351
                            K  K++ +    A    F  I    A     D++  LD L  +
Sbjct: 538 -----------------KMQKERMQPSNRA----FRPIIEGYAVAG--DMKSALDTLDLM 574

Query: 352 KDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGN 411
           +   G  P+    + L+   V    ++RA  +  +   AG+  N  +Y  + + + ASG+
Sbjct: 575 RRS-GCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGD 633

Query: 412 RKSASKLLSKM 422
              A +  +K+
Sbjct: 634 IGKAFEYFTKI 644



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 63/145 (43%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y+ L+   C   ++  AL V  +M   ++  +T   N ++       +      +   + 
Sbjct: 656 YETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMK 715

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
              + PN  T+ S I+   K  D   A  +++++ ++ L P    Y  ++ G+ R     
Sbjct: 716 EDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPD 775

Query: 134 GALMVLKEMEQANVKPDSQTFSYLI 158
            AL   +EM+ A +KPD  ++  L+
Sbjct: 776 RALKCFEEMKLAGLKPDEASYHCLV 800



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/163 (20%), Positives = 75/163 (46%), Gaps = 16/163 (9%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS 86
           V  A D+++QM +  + P+  T  S ++AC ++ +     ++   +    LKPN +T+ +
Sbjct: 704 VWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTT 763

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV------QGALMVLK 140
           +I    ++   D A    +++K   L P  + Y+ ++     +  V       G + V +
Sbjct: 764 LIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGSTYTGIISVCR 823

Query: 141 EMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK 183
           EM + ++  D +T    +H         ++  +++  GG +T+
Sbjct: 824 EMSENDLTVDLRT---AVHWS-------RWLHKIERTGGALTE 856


>gi|125539402|gb|EAY85797.1| hypothetical protein OsI_07159 [Oryza sativa Indica Group]
          Length = 506

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 130/279 (46%), Gaps = 11/279 (3%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGE-LVPSTETINSILHACEESYEFNL 64
           ++ PS  +Y  LI   C   ++  A ++ E M++ + +VP   T N ++       +   
Sbjct: 225 DVRPSLVTYSTLIGGLCRGAQMKEAFELFEDMIEKDRIVPDQLTYNLLIGGFCRLGQVEK 284

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
            + I+  +  +  +PN+  + ++I+ + K  + ++A  + +++    + P A  Y +++ 
Sbjct: 285 AQSIFGFMRKNECEPNAFNYATLINGHCKKGEVEAARGVFEEMIRSGVQPDAVSYTSLVG 344

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQI 181
              R  +V   + +++EM Q   K D  T++ L+     +  I   +   E+L S G Q+
Sbjct: 345 CLCRHGNVDEGINLVQEMWQKGCKADVVTYNLLLEGLCKDRRIAEAVTLLEKLPSEGVQL 404

Query: 182 TKYVFMALINAYTTCGEFEKAR----QVVLDAEIPVKSRSEVKSALVSALASHGRTSDAI 237
               +  ++N   +CGE EKA      ++    +P  + S +   L+  L   GR SDA 
Sbjct: 405 NVASYRIVMNCLCSCGEMEKAAGLLGMMLGRGFVPHYAASNM---LLIGLCDVGRVSDAT 461

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276
           +    + + G   E R    LIE +  E +L R I+LL+
Sbjct: 462 VTLYGLVDTGFMPEARCWARLIESVFRERKLRRSIELLD 500



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/317 (20%), Positives = 134/317 (42%), Gaps = 24/317 (7%)

Query: 78  KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMN---LMPTASMYNAIMAGYFRKKDVQG 134
           +PN+  +  +I   VK  D  +A+ + D+++ MN   + P+   Y+ ++ G  R   ++ 
Sbjct: 189 QPNTCIYNILIKYYVKKGDLGTAFQVFDEMRNMNCADVRPSLVTYSTLIGGLCRGAQMKE 248

Query: 135 ALMVLKEM-EQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK-------YVF 186
           A  + ++M E+  + PD  T++ LI         +   E+ +S  G + K       + +
Sbjct: 249 AFELFEDMIEKDRIVPDQLTYNLLIGGFCR----LGQVEKAQSIFGFMRKNECEPNAFNY 304

Query: 187 MALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
             LIN +   GE E AR V  +     V+  +   ++LV  L  HG   + I + +E+ +
Sbjct: 305 ATLINGHCKKGEVEAARGVFEEMIRSGVQPDAVSYTSLVGCLCRHGNVDEGINLVQEMWQ 364

Query: 246 AGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD-GCCRLILHCV-RFKQLSS 303
            GC  +      L+E L  +  +   + LLE++      ++    R++++C+    ++  
Sbjct: 365 KGCKADVVTYNLLLEGLCKDRRIAEAVTLLEKLPSEGVQLNVASYRIVMNCLCSCGEMEK 424

Query: 304 ATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKC 363
           A  LL  +  +      A         C +       V +      +   + G  P  +C
Sbjct: 425 AAGLLGMMLGRGFVPHYAASNMLLIGLCDVGRVSDATVTL------YGLVDTGFMPEARC 478

Query: 364 LDFLLGACVNARDLKRA 380
              L+ +    R L+R+
Sbjct: 479 WARLIESVFRERKLRRS 495


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 105/459 (22%), Positives = 182/459 (39%), Gaps = 78/459 (16%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
            K+ I  S  ++  +I   C   K   A D +  M    + P+  T N++++      +F
Sbjct: 209 VKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKF 268

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
               +I+  +   NLKP+  T+ S IS   K +  + A  +L  L E  L+P A  YNA+
Sbjct: 269 EAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNAL 328

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH------NCSNEEDIIKYYEQLKS 176
           + G   K D+  A     EM    +     T++ LIH           ED+IK   +++ 
Sbjct: 329 IDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIK---EMRE 385

Query: 177 AGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSD 235
            G +     +   IN Y  CG  +KA  +  +  E  ++   E  ++L+       R S+
Sbjct: 386 KGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSE 445

Query: 236 AIIVYEE-IKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHD----PD-----Y 283
           A   +++ IKE    + P  ++  ALI+     G ++R  QLL+E+ +    PD      
Sbjct: 446 AEEKFKKSIKEG---MLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNT 502

Query: 284 WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQI 343
            M G CR        +++  A  LL ++K++                             
Sbjct: 503 LMQGYCRE-------RKVEEAKKLLDEMKER----------------------------- 526

Query: 344 GLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMY 403
                       G+ P     + L+       D+K A  ++ E  + G    +L+Y  + 
Sbjct: 527 ------------GIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALI 574

Query: 404 KAFLASGNRKSASKLLSKMPK-----DDPHVRFVIQACK 437
           + +   G    A +LL +M       DD    +VI+A K
Sbjct: 575 QGYSKIGEADHAEELLREMQSKGITPDDSTYLYVIEAMK 613



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 75/161 (46%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P    +  LI   C    +  A  ++++M   ++VP   T N+++       +    +++
Sbjct: 460 PDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKL 519

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    +KP+  ++ ++IS   K  D   A  + D++  +   PT   YNA++ GY +
Sbjct: 520 LDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSK 579

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK 169
             +   A  +L+EM+   + PD  T+ Y+I      +D+++
Sbjct: 580 IGEADHAEELLREMQSKGITPDDSTYLYVIEAMKTNDDLVE 620



 Score = 46.2 bits (108), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 88/420 (20%), Positives = 177/420 (42%), Gaps = 51/420 (12%)

Query: 44  PSTETINSILHACEESYEFN---LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSA 100
           PS   +  ILH    +  FN   L R         N+K  +  F  ++S   + +  D A
Sbjct: 114 PSFHILQPILHTTTPTVIFNELSLARN------RLNVK-TTLVFDLLLSAYCQFRKPDEA 166

Query: 101 YSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160
              L+ +KE  ++P     N++++   +   ++ A  V +EM + N+K    TF+ +I+ 
Sbjct: 167 LECLNLMKENEIIPKTETCNSLLSLLLKLNKIKMAWFVYEEMVKMNIKSSIVTFNIMINI 226

Query: 161 CSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSR 216
              E    K   +   ++  G +     +  +IN Y   G+FE A ++     +  +K  
Sbjct: 227 LCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPD 286

Query: 217 SEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQL 274
               ++ +S L    R  +A  V  ++ E+G  L P AV   ALI+   ++G+L++    
Sbjct: 287 CYTYNSFISRLCKERRIEEASGVLCKLLESG--LVPNAVTYNALIDGCCNKGDLDKAFAY 344

Query: 275 LEEVHDPDYWMDGCC-RLILHCVRF-KQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQ 332
            +E+ +           L++H +   K++  A D++K++++K  + ++         +C+
Sbjct: 345 RDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCR 404

Query: 333 IATTDP--------------PDVQIGLDLL--------------QFIKD-ELGLPPSRKC 363
                               P V+    L+              +F K  + G+ P    
Sbjct: 405 CGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIM 464

Query: 364 LDFLL-GACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
            + L+ G CVN  ++ RA  + KE +NA +  + +++  + + +      + A KLL +M
Sbjct: 465 FNALIDGHCVNG-NIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEM 523


>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 827

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 90/423 (21%), Positives = 187/423 (44%), Gaps = 15/423 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
            +P   ++  L+       +   A++V+++M      PS  T NS++ A           
Sbjct: 319 FSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAM 378

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +    +KP+  T+ +++S   K    + A  +  +++     P    +NA++  +
Sbjct: 379 ELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMH 438

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITK 183
             +      + V +E+E  N  PD  T++ L+        + ++   ++++K AG    +
Sbjct: 439 GNRGRFAEMMKVFEEIEICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPER 498

Query: 184 YVFMALINAYTTCGEFEKARQV---VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
             F  LI+AY+ CG F++A  V   +L+A +     S   +A+++ALA  G    +  V+
Sbjct: 499 DTFNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDLSS--YNAVLAALARGGLWEQSEKVF 556

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQ 300
            E+K+  C        +L+    +  E+ R+  L EE++     +     ++L  +    
Sbjct: 557 AEMKDGRCKPNELTYCSLLHAYANSKEIERMHTLAEEIYSG---LTEPVPVLLKTLVL-- 611

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPD-VQIGLDLLQFIKDELGLPP 359
           ++S  DLL + +  F++ +       S +   IA       V    ++L F+ +E G  P
Sbjct: 612 VNSKCDLLMETEHAFEELKKKGSPDLSTLNAMIAIYGRRQMVAKANEILNFM-NESGFSP 670

Query: 360 SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLL 419
           S    + L+     + + +R+  + KE    GL  +++SY  +  A+  +G  K AS++ 
Sbjct: 671 SLATYNSLMYMHSRSENFERSEEVLKEILAKGLKPDLISYNTVIFAYCRNGRMKDASRIF 730

Query: 420 SKM 422
           S M
Sbjct: 731 SYM 733



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/258 (20%), Positives = 115/258 (44%), Gaps = 8/258 (3%)

Query: 33  VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92
           +V  M    + P   T N+++  C     +    +++  +      P+  TF +++ +  
Sbjct: 275 LVHGMKSSGVAPDDYTYNTLISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYG 334

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
           K +    A  +L +++     P+   YN++++ Y R   ++ A+ +  +M +  +KPD  
Sbjct: 335 KSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVF 394

Query: 153 TFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA 209
           T++ L+        +E  ++ + ++++AG +     F ALI  +   G F +  +V  + 
Sbjct: 395 TYTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEI 454

Query: 210 EIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGEL 268
           EI   +   V  + L++    +G  S+   V++E+K AG   E      LI   +  G  
Sbjct: 455 EICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSF 514

Query: 269 NRLI----QLLEEVHDPD 282
            + +    ++LE    PD
Sbjct: 515 QQAMAVYKRMLEAGVTPD 532



 Score = 45.4 bits (106), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 78/171 (45%), Gaps = 4/171 (2%)

Query: 79  PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMV 138
           P+  T  +MI++  + +    A  +L+ + E    P+ + YN++M  + R ++ + +  V
Sbjct: 635 PDLSTLNAMIAIYGRRQMVAKANEILNFMNESGFSPSLATYNSLMYMHSRSENFERSEEV 694

Query: 139 LKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYVFMALINAYTT 195
           LKE+    +KPD  +++ +I   C N   +D  + +  +K+ G       +   + +Y  
Sbjct: 695 LKEILAKGLKPDLISYNTVIFAYCRNGRMKDASRIFSYMKTYGLVPDVITYNTFVASYAA 754

Query: 196 CGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
              FE A  VV    +   K      +++V     H R +DAI+    + +
Sbjct: 755 DSLFEDAIGVVRYMIKHGCKRNQNTYNSIVDGYCKHSRRADAIMFVSSLNQ 805



 Score = 42.4 bits (98), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 77/391 (19%), Positives = 152/391 (38%), Gaps = 74/391 (18%)

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQ-- 144
           +I++  K     +A S+L++L++         Y +++  Y      + A++V K+ME+  
Sbjct: 188 IITMLGKEGKVSAASSILNNLRKDGFDLDVYAYTSLITAYASNGRYRDAVLVFKKMEEEG 247

Query: 145 ----------------------------------ANVKPDSQTFSYLIHNC---SNEEDI 167
                                             + V PD  T++ LI  C   S  E+ 
Sbjct: 248 CKPTLITYNVILNVYGKMGMPWSKISGLVHGMKSSGVAPDDYTYNTLISCCRRGSLYEEA 307

Query: 168 IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSA 226
            + +E++K +G    K  F  L++ Y      ++A +V+ + E    S S V  ++L+SA
Sbjct: 308 AQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISA 367

Query: 227 LASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
            A  G   +A+ + +++ E G   +      L+      G     +++  E+        
Sbjct: 368 YARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAA----- 422

Query: 287 GCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDV----- 341
           GC            + +   L+K   ++ +  EM   +   EI C  A    PD+     
Sbjct: 423 GCK---------PNICTFNALIKMHGNRGRFAEMMKVFEEIEI-CNCA----PDIVTWNT 468

Query: 342 ------QIGLDL-LQFIKDEL---GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAG 391
                 Q G+D  +  +  E+   G  P R   + L+ A       ++A  ++K    AG
Sbjct: 469 LLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRMLEAG 528

Query: 392 LPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           +  ++ SY  +  A    G  + + K+ ++M
Sbjct: 529 VTPDLSSYNAVLAALARGGLWEQSEKVFAEM 559



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 3/160 (1%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS 86
           V  A +++  M +    PS  T NS+++    S  F     +   I    LKP+  ++ +
Sbjct: 653 VAKANEILNFMNESGFSPSLATYNSLMYMHSRSENFERSEEVLKEILAKGLKPDLISYNT 712

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           +I    +      A  +   +K   L+P    YN  +A Y      + A+ V++ M +  
Sbjct: 713 VIFAYCRNGRMKDASRIFSYMKTYGLVPDVITYNTFVASYAADSLFEDAIGVVRYMIKHG 772

Query: 147 VKPDSQTFSYLIHN-C--SNEEDIIKYYEQLKSAGGQITK 183
            K +  T++ ++   C  S   D I +   L      +TK
Sbjct: 773 CKRNQNTYNSIVDGYCKHSRRADAIMFVSSLNQLDPHVTK 812


>gi|299471535|emb|CBN80021.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 607

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 101/437 (23%), Positives = 182/437 (41%), Gaps = 34/437 (7%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           A + + P   SY   I+      +   AL++ E M    + P   T  S + AC     +
Sbjct: 165 ATVGLAPDVISYSSAISACGRGGRWEEALELFEDMRTSGVAPDVITYGSAIAACANGGRW 224

Query: 63  ----NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM 118
               +L+R+I P +    L PN  ++ S+I+   K   +  A  LL ++K M L P    
Sbjct: 225 KEAVSLLRKI-PTV---GLTPNVISYSSVITACAKEGQWKIALDLLREMKAMRLAPNIIT 280

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE---DIIKYYEQLK 175
           YNA +    +    + A+ +L+EM    + PD  ++S +I  CS  +   + I    ++ 
Sbjct: 281 YNAAIDACAKGGRWKEAIDLLREMPTVGLPPDVVSYSSVIDACSKGDRWKEAIDILREMP 340

Query: 176 SAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIP---VKSRSEVKSALVSALASHGR 232
           + G       + + I+A    G++++A+ ++   E+P   V  R    ++ ++A A   +
Sbjct: 341 TVGLSPNAISYNSAIDACAKGGQWKEAKGLLR--EMPTAGVTQRVIGYNSAIAACAKGEQ 398

Query: 233 TSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLI---QLLEEVHDPDYWMDGCC 289
             +A+ +  E+   G +     V +    +++ G+ N  I   +LL E+       +  C
Sbjct: 399 WKEALALLREMPTVGLHTT---VFSYSSAIDACGKGNLWIKAKELLREMATVGLAPNEVC 455

Query: 290 --RLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDL 347
               I  C R  Q   A DLL+++       ++   + +S      A  D        + 
Sbjct: 456 YNSAIDACGRGDQWEEAVDLLREMPTVGLSPDV---FSYSSAIAACAKGDQWK-----EA 507

Query: 348 LQFIKD--ELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKA 405
           L  +K+    GL P   C +  + AC      K A  +  E   AGL  N++SY     A
Sbjct: 508 LAVLKEMSAAGLAPDLICYNSAIDACSKGGRWKMAVALLGEMRAAGLTPNIISYSSAIDA 567

Query: 406 FLASGNRKSASKLLSKM 422
            +  G  K    LL +M
Sbjct: 568 CVRGGQWKEGIALLEEM 584



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 88/413 (21%), Positives = 172/413 (41%), Gaps = 40/413 (9%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P + SY   I       +  +ALD++ +M+  ++ P+    NS +++C ++ ++ +  
Sbjct: 99  IAPDARSYGAAINACARGGRWKIALDLLREMLARDVTPNVIIYNSAINSCAKAGQWEIAV 158

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +    L P+  ++ S IS   +   ++ A  L +D++   + P    Y + +A  
Sbjct: 159 SLVKEMATVGLAPDVISYSSAISACGRGGRWEEALELFEDMRTSGVAPDVITYGSAIAAC 218

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE------DIIKYYEQLKSAGGQ 180
                 + A+ +L+++    + P+  ++S +I  C+ E       D+++  + ++ A   
Sbjct: 219 ANGGRWKEAVSLLRKIPTVGLTPNVISYSSVITACAKEGQWKIALDLLREMKAMRLAPNI 278

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVK--SALVSALASHGRTSDAI 237
           IT   + A I+A    G +++A  + L  E+P V    +V   S+++ A +   R  +AI
Sbjct: 279 IT---YNAAIDACAKGGRWKEA--IDLLREMPTVGLPPDVVSYSSVIDACSKGDRWKEAI 333

Query: 238 IVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYW--MDGCCRLIL 293
            +  E+   G  L P A+   + I+     G+      LL E+        + G    I 
Sbjct: 334 DILREMPTVG--LSPNAISYNSAIDACAKGGQWKEAKGLLREMPTAGVTQRVIGYNSAIA 391

Query: 294 HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKD 353
            C + +Q   A  LL+         EM      + +F   +  D      G   L     
Sbjct: 392 ACAKGEQWKEALALLR---------EMPTVGLHTTVFSYSSAID----ACGKGNLWIKAK 438

Query: 354 EL-------GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSY 399
           EL       GL P+  C +  + AC      + A  + +E    GL  +V SY
Sbjct: 439 ELLREMATVGLAPNEVCYNSAIDACGRGDQWEEAVDLLREMPTVGLSPDVFSY 491



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 80/360 (22%), Positives = 149/360 (41%), Gaps = 31/360 (8%)

Query: 97  FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSY 156
           ++ A  LL ++      P  S Y+A++    +    + A+  L EM    + PD++++  
Sbjct: 49  WEQAVRLLREMPTEGAAPDLSAYSAVIDACAKGGQWKMAVFFLMEMPTKGIAPDARSYGA 108

Query: 157 LIHNCSNEE------DIIKYYEQLKSAGGQITKYVFM--ALINAYTTCGEFEKARQVVLD 208
            I+ C+         D+++  E L      +T  V +  + IN+    G++E A  +V +
Sbjct: 109 AINACARGGRWKIALDLLR--EMLAR---DVTPNVIIYNSAINSCAKAGQWEIAVSLVKE 163

Query: 209 -AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
            A + +       S+ +SA    GR  +A+ ++E+++ +G   +     + I    + G 
Sbjct: 164 MATVGLAPDVISYSSAISACGRGGRWEEALELFEDMRTSGVAPDVITYGSAIAACANGGR 223

Query: 268 LNRLIQLLEEVH----DPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAME 323
               + LL ++      P+  +     +I  C +  Q   A DLL+++K   +     + 
Sbjct: 224 WKEAVSLLRKIPTVGLTPN--VISYSSVITACAKEGQWKIALDLLREMK-AMRLAPNIIT 280

Query: 324 YHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLI 383
           Y+ +   C          +  +DLL+ +   +GLPP       ++ AC      K A  I
Sbjct: 281 YNAAIDACAKGGR----WKEAIDLLREMP-TVGLPPDVVSYSSVIDACSKGDRWKEAIDI 335

Query: 384 WKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFV-----IQACKQ 438
            +E    GL  N +SY     A    G  K A  LL +MP      R +     I AC +
Sbjct: 336 LREMPTVGLSPNAISYNSAIDACAKGGQWKEAKGLLREMPTAGVTQRVIGYNSAIAACAK 395



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/275 (17%), Positives = 117/275 (42%), Gaps = 4/275 (1%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
            P  ++Y  +I       +  +A+  + +M    + P   +  + ++AC     + +   
Sbjct: 65  APDLSAYSAVIDACAKGGQWKMAVFFLMEMPTKGIAPDARSYGAAINACARGGRWKIALD 124

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +   +   ++ PN   + S I+   K   ++ A SL+ ++  + L P    Y++ ++   
Sbjct: 125 LLREMLARDVTPNVIIYNSAINSCAKAGQWEIAVSLVKEMATVGLAPDVISYSSAISACG 184

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKY 184
           R    + AL + ++M  + V PD  T+   I  C+N    ++ +    ++ + G      
Sbjct: 185 RGGRWEEALELFEDMRTSGVAPDVITYGSAIAACANGGRWKEAVSLLRKIPTVGLTPNVI 244

Query: 185 VFMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
            + ++I A    G+++ A  ++ + + + +       +A + A A  GR  +AI +  E+
Sbjct: 245 SYSSVITACAKEGQWKIALDLLREMKAMRLAPNIITYNAAIDACAKGGRWKEAIDLLREM 304

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
              G   +  +  ++I+  +        I +L E+
Sbjct: 305 PTVGLPPDVVSYSSVIDACSKGDRWKEAIDILREM 339



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 33/160 (20%), Positives = 67/160 (41%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           A + + P+   Y   I       +   A+D++ +M    L P   + +S + AC +  ++
Sbjct: 445 ATVGLAPNEVCYNSAIDACGRGDQWEEAVDLLREMPTVGLSPDVFSYSSAIAACAKGDQW 504

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
                +   +    L P+   + S I    K   +  A +LL +++   L P    Y++ 
Sbjct: 505 KEALAVLKEMSAAGLAPDLICYNSAIDACSKGGRWKMAVALLGEMRAAGLTPNIISYSSA 564

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS 162
           +    R    +  + +L+EM  + V PD  T+  L+  C+
Sbjct: 565 IDACVRGGQWKEGIALLEEMRGSGVVPDVITYHALMVTCA 604


>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 819

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 100/462 (21%), Positives = 187/462 (40%), Gaps = 57/462 (12%)

Query: 7   ITPSSASYKKLITYSCDLLKVHV-ALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           I P + +Y  LIT  C    +H  A  V E+M          T N++L    +S+     
Sbjct: 275 IAPDAYTYNTLIT-CCKRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEA 333

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            ++   +  +   P+  T+ S+IS   +    D A  L + + E    P    Y  +++G
Sbjct: 334 MKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSG 393

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYL-------------------IHNCSNEED 166
           + R   V+ A+ + +EM  A  KP+  TF+                     I+ C    D
Sbjct: 394 FERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPD 453

Query: 167 IIKY-------------------YEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV-- 205
           I+ +                   ++++K AG    +  F  LI+AY+ CG FE+A  V  
Sbjct: 454 IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYR 513

Query: 206 -VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
            +LDA   V       + +++ALA  G    +  V  E+++  C        +L+    +
Sbjct: 514 RMLDAG--VTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYAN 571

Query: 265 EGELNRLIQLLEEVH----DPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEM 320
             E+  +  L EEV+    +P   +     L+L C +   L  A     +LK++    ++
Sbjct: 572 GKEIGLMHSLAEEVYSGVIEPRAVL--LKTLVLVCSKCDLLPEAERAFSELKERGFSPDI 629

Query: 321 AMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRA 380
                   I+ +       +     ++L ++K E G  PS    + L+     + D  ++
Sbjct: 630 TTLNSMVSIYGRRQMVGKAN-----EVLDYMK-ERGFTPSMATYNSLMYMHSRSADFGKS 683

Query: 381 HLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
             I +E    G+  +++SY  +  A+  +   + AS++ S+M
Sbjct: 684 EEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEM 725



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/252 (19%), Positives = 108/252 (42%), Gaps = 4/252 (1%)

Query: 33  VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92
           +VE+M    + P   T N+++  C+         +++  +       +  T+ +++ +  
Sbjct: 266 LVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVYG 325

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
           K      A  +L++++     P+   YN++++ Y R   +  A+ +  +M +   KPD  
Sbjct: 326 KSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVF 385

Query: 153 TFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA 209
           T++ L+         E  +  +E++++AG +     F A I  Y   G+F    ++  + 
Sbjct: 386 TYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEI 445

Query: 210 EIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGEL 268
            +   S   V  + L++    +G  S+   V++E+K AG   E      LI   +  G  
Sbjct: 446 NVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSF 505

Query: 269 NRLIQLLEEVHD 280
            + + +   + D
Sbjct: 506 EQAMTVYRRMLD 517



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/250 (19%), Positives = 109/250 (43%), Gaps = 8/250 (3%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  L+    +  ++ +   + E++  G + P    + +++  C +        R 
Sbjct: 557 PNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERA 616

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +      P+  T  SM+S+  + +    A  +LD +KE    P+ + YN++M  + R
Sbjct: 617 FSELKERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMATYNSLMYMHSR 676

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYV 185
             D   +  +L+E+    +KPD  +++ +I+  C N    D  + + +++ +G       
Sbjct: 677 SADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPDVIT 736

Query: 186 FMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +   I +Y     FE+A  VV    +   +      +++V       R  +A +  E+++
Sbjct: 737 YNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLR 796

Query: 245 EAGCNLEPRA 254
               NL+P A
Sbjct: 797 ----NLDPHA 802



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/412 (17%), Positives = 157/412 (38%), Gaps = 73/412 (17%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEE-SYEFNLVRRIYPM 71
           SY  LI+   +  +   A++V ++M +    P+  T N IL+   +    +N +  +   
Sbjct: 210 SYTSLISAFANSGRYREAVNVFKKMEEEGCKPTLITYNVILNVFGKMGTPWNKITSLVEK 269

Query: 72  ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131
           +    + P++ T+ ++I+   +      A  + +++K          YNA++  Y +   
Sbjct: 270 MKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVYGKSHR 329

Query: 132 VQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALIN 191
            + A+ VL EME     P   T++                                +LI+
Sbjct: 330 PKEAMKVLNEMELNGFSPSIVTYN--------------------------------SLIS 357

Query: 192 AYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNL 250
           AY   G  ++A ++    AE   K      + L+S     G+   A+ ++EE++ AGC  
Sbjct: 358 AYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKP 417

Query: 251 EPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQ 310
                 A I+   + G+   ++++ +E++         C L    V +  L +       
Sbjct: 418 NICTFNAFIKMYGNRGKFVDMMKIFDEIN--------VCGLSPDIVTWNTLLAVF----- 464

Query: 311 LKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGA 370
                   +  M+   S +F ++                      G  P R+  + L+ A
Sbjct: 465 -------GQNGMDSEVSGVFKEMKRA-------------------GFVPERETFNTLISA 498

Query: 371 CVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
                  ++A  +++   +AG+  ++ +Y  +  A    G  + + K+L++M
Sbjct: 499 YSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEM 550



 Score = 38.5 bits (88), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 2/110 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P   SY  +I   C   ++  A  +  +M    +VP   T N+ + +      F    
Sbjct: 695 IKPDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPDVITYNTFIGSYAADSMFEEAI 754

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTA 116
            +   +  H  +PN  T+ S++    K+   D A   ++DL+  NL P A
Sbjct: 755 GVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLR--NLDPHA 802


>gi|428671933|gb|EKX72848.1| pentatricopeptide repeat domain containing protein [Babesia equi]
          Length = 1104

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 126/264 (47%), Gaps = 6/264 (2%)

Query: 9    PSSASYKKLITYSCDLLKVHVALDVVEQM-VQGELVPSTETINSILHACEESYEFNLVRR 67
            P+  +Y  +     +  +V  A+ + E M  QG++ P+T    +++    ++ + +   +
Sbjct: 766  PNEVTYGCMFDAYVNNNRVDDAVRLFEDMKSQGKVKPNTIMYTTLIKGYGQNKQLDKALK 825

Query: 68   IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
            ++ M+C  N+  N+ T+ S+I    ++ D + A SLL+D+   N+ P    ++ I+ GY 
Sbjct: 826  MFNMMCSENVAANTVTYNSIIDACARVGDMNGAASLLEDMLNNNIEPDLITFSTIIKGYC 885

Query: 128  RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKY 184
             + ++  +  +L  M +  + PD   ++ L+  C     +    K ++Q++  G   + +
Sbjct: 886  VQSNMDKSFQLLSIMYERGIMPDVILYNSLLEGCVKSGLLWLCEKLWQQMQQYGIPPSNF 945

Query: 185  VFMALINAYTTCGEFEKARQV--VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
                LI  Y   G+ +K  ++   L  +      + V + L+SA  ++GR S  + VY+ 
Sbjct: 946  TLTILIKMYGRNGQLDKVFELADTLPKQYGFTINTHVYTCLMSACITNGRYSMILEVYKC 1005

Query: 243  IKEAGCNLEPRAVIALIEHLNSEG 266
            +K AG   + +    LI+  +  G
Sbjct: 1006 MKSAGIKADAKTFETLIQGASKGG 1029



 Score = 43.5 bits (101), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 2/128 (1%)

Query: 42  LVPSTETINSILHACEESYEFNLVRRIY-PMICHHNLKPNSETFRSMISLNVKIKDFDSA 100
           L P  +T   I+ +       +   R++   +     +PN  T+  M    V     D A
Sbjct: 728 LQPQAQTYGVIIKSLSCCGMIDECNRLWDEFVNKRGFEPNEVTYGCMFDAYVNNNRVDDA 787

Query: 101 YSLLDDLKEMN-LMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159
             L +D+K    + P   MY  ++ GY + K +  AL +   M   NV  ++ T++ +I 
Sbjct: 788 VRLFEDMKSQGKVKPNTIMYTTLIKGYGQNKQLDKALKMFNMMCSENVAANTVTYNSIID 847

Query: 160 NCSNEEDI 167
            C+   D+
Sbjct: 848 ACARVGDM 855



 Score = 42.0 bits (97), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 53/293 (18%), Positives = 120/293 (40%), Gaps = 20/293 (6%)

Query: 143 EQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEF 199
           E+ ++  D   FS ++  C    N + +++   + +  G Q     +  +I + + CG  
Sbjct: 689 EKISILVDENAFSCILDCCLKLKNSKRLLRLINKFRLWGLQPQAQTYGVIIKSLSCCGMI 748

Query: 200 EKARQVVLDAEIPVKSRSE----VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255
           ++  +  L  E   K   E        +  A  ++ R  DA+ ++E++K  G  ++P  +
Sbjct: 749 DECNR--LWDEFVNKRGFEPNEVTYGCMFDAYVNNNRVDDAVRLFEDMKSQG-KVKPNTI 805

Query: 256 I--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQLSSATDLLKQL 311
           +   LI+      +L++ +++   +   +   +      +I  C R   ++ A  LL+ +
Sbjct: 806 MYTTLIKGYGQNKQLDKALKMFNMMCSENVAANTVTYNSIIDACARVGDMNGAASLLEDM 865

Query: 312 KDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGAC 371
            +   + ++       + +C  +  D         LL  I  E G+ P     + LL  C
Sbjct: 866 LNNNIEPDLITFSTIIKGYCVQSNMDKS-----FQLLS-IMYERGIMPDVILYNSLLEGC 919

Query: 372 VNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424
           V +  L     +W++ +  G+P +  +   + K +  +G      +L   +PK
Sbjct: 920 VKSGLLWLCEKLWQQMQQYGIPPSNFTLTILIKMYGRNGQLDKVFELADTLPK 972


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/410 (18%), Positives = 180/410 (43%), Gaps = 12/410 (2%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           +P+  +   LI   C + +V  AL  ++Q +     P   T N+ +H   ++   +   +
Sbjct: 264 SPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALK 323

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +  ++      P+  T+ ++I+   K  + D A  +++ + +   +P  + +N ++    
Sbjct: 324 VMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALS 383

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKY 184
            +  ++ AL + +E+    + PD  TF+ LI+      D    I+ +E++KS+G    + 
Sbjct: 384 SQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEV 443

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEI 243
            +  LI+   + G+   A  ++ + E     RS V  + ++ AL    R  +A  V++++
Sbjct: 444 TYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQM 503

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQL 301
              G +        LI+ L     ++   +L+E++       +      ++ H  +   +
Sbjct: 504 DAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNI 563

Query: 302 SSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSR 361
             A D+L+ +     + ++          C+   T     Q+ L LL+ ++ + G+ P+ 
Sbjct: 564 KKAADILETMTANGFEIDVVTYGTLINGLCKAGRT-----QVALKLLRGMRIK-GIRPTP 617

Query: 362 KCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGN 411
           K  + ++ +     +L+ A  +++E    G P + L+Y  ++++    G 
Sbjct: 618 KAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDALTYKIVFRSLCRGGG 667



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 86/436 (19%), Positives = 169/436 (38%), Gaps = 57/436 (13%)

Query: 33  VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92
           V  +M    + P   T+N+++ A   +++      +   +  H + P+  TF +++   +
Sbjct: 184 VYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFI 243

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
           +    ++A  +   + E    PT    N ++ GY +   V+ AL  +++      +PD  
Sbjct: 244 EEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQV 303

Query: 153 TFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV--- 206
           T++  +H  C N      +K  + +   G     + +  +IN  +  GE ++A+ +V   
Sbjct: 304 TYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQM 363

Query: 207 ------------------------------LDAEIPVKSRSE---VKSALVSALASHGRT 233
                                         L  E+ VK  S      + L++AL   G  
Sbjct: 364 VDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDP 423

Query: 234 SDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCR--- 290
              I ++EE+K +GC  +      LI+HL S G+L   + LL E+       +GC R   
Sbjct: 424 HLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMES-----NGCPRSTV 478

Query: 291 ----LILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLD 346
               +I    +  ++  A ++  Q+  +             +  C+    D     I   
Sbjct: 479 TYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIE-- 536

Query: 347 LLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAF 406
             Q +K+  GL P+    + +L       ++K+A  I +     G   +V++Y  +    
Sbjct: 537 --QMVKE--GLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGL 592

Query: 407 LASGNRKSASKLLSKM 422
             +G  + A KLL  M
Sbjct: 593 CKAGRTQVALKLLRGM 608



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 88/438 (20%), Positives = 176/438 (40%), Gaps = 33/438 (7%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           A+ +  PSSA Y++++      L    A D++E +V+       +    ++ +  ESY  
Sbjct: 81  AREDFAPSSAVYEEIVQK----LGTAGAFDLMEGLVREMRREGHQVRAVVVRSFVESYA- 135

Query: 63  NLVRRI---YPMICHH------NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLM 113
             +RR      ++ +        ++ ++  F  ++++ V+        S+ +++    + 
Sbjct: 136 -RLRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQ 194

Query: 114 PTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKY 170
           P     N ++    R   V+ A+++L+EM    V PD  TF+ L+     E  I   ++ 
Sbjct: 195 PDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRV 254

Query: 171 YEQLKSAGGQITKYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSA 226
             ++  AG   T      LIN Y   G  E A    +Q + D   P +      +  V  
Sbjct: 255 KAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQV---TYNTFVHG 311

Query: 227 LASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
           L  +G  S A+ V + + + G + +      +I  L+  GEL+    ++ ++ D     D
Sbjct: 312 LCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPD 371

Query: 287 GCC--RLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIG 344
                 LI+      +L  A DL ++L  K    ++          C++      D  +G
Sbjct: 372 TTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVG-----DPHLG 426

Query: 345 LDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYK 404
           + L + +K   G  P     + L+    +   L  A  +  E E+ G P + ++Y  +  
Sbjct: 427 IRLFEEMKSS-GCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIID 485

Query: 405 AFLASGNRKSASKLLSKM 422
           A       + A ++  +M
Sbjct: 486 ALCKKMRIEEAEEVFDQM 503


>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
 gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
          Length = 814

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 143/316 (45%), Gaps = 10/316 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           ++P       LI+  C   K   AL++  Q +    V  T T N++LH   E+ + +   
Sbjct: 455 MSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAF 514

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           RI   I       +  ++ ++IS     K  D A+  LD++ +  L P    Y+ ++ G 
Sbjct: 515 RIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGL 574

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITK 183
           F    V+ A+    + ++  + PD  T+S +I  C      E+  ++++++ S   Q   
Sbjct: 575 FNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNT 634

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
            V+  LI AY   G    A ++  D +   +   S   ++L+  ++   R  +A +++EE
Sbjct: 635 VVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEE 694

Query: 243 IKEAGCNLEPRAV--IALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL--HCVRF 298
           ++  G  LEP      ALI+     G++ ++  LL E+H  +   +     ++     R 
Sbjct: 695 MRMEG--LEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARD 752

Query: 299 KQLSSATDLLKQLKDK 314
             ++ A+ LL ++++K
Sbjct: 753 GNVTEASRLLNEMREK 768



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 92/473 (19%), Positives = 174/473 (36%), Gaps = 87/473 (18%)

Query: 28  HVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC-------------- 73
           ++ALDV   +    + PS  T N +L +   + EF      + ++C              
Sbjct: 197 YLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCKGVSPDVYLFTTAI 256

Query: 74  --------------------HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLM 113
                                  + PN  TF ++I        +D A+   + + E  + 
Sbjct: 257 NAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGME 316

Query: 114 PTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKY 170
           PT   Y+ ++ G  R K +  A  VLKEM +    P+   ++ LI +     +    I+ 
Sbjct: 317 PTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEI 376

Query: 171 YEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD---------------------- 208
            + + S G  +T   +  LI  Y   G+ + A +++ +                      
Sbjct: 377 KDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCS 436

Query: 209 -----------AEIPVKSRS---EVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRA 254
                       E+ +++ S    + + L+S L  HG+ S A+ ++ +    G  ++ R 
Sbjct: 437 HLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRT 496

Query: 255 VIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQLSSATDLLKQL- 311
             AL+  L   G+L+   ++ +E+      MD      LI  C   K+L  A   L ++ 
Sbjct: 497 SNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMV 556

Query: 312 KDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKD--ELGLPPSRKCLDFLLG 369
           K   K D     Y +S + C +   +  +     + +QF  D    G+ P       ++ 
Sbjct: 557 KRGLKPD----NYTYSILICGLFNMNKVE-----EAIQFWDDCKRNGMLPDVYTYSVMID 607

Query: 370 ACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
            C  A   +     + E  +  +  N + Y  + +A+  SG    A +L   M
Sbjct: 608 GCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDM 660



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 74/166 (44%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P++  Y  LI   C   ++ +AL++ E M    + P++ T  S++            +
Sbjct: 630 VQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAK 689

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +    L+PN   + ++I    K+        LL ++   N+ P    Y  ++ GY
Sbjct: 690 LLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGY 749

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE 172
            R  +V  A  +L EM +  + PDS T+   I+    +  +++ ++
Sbjct: 750 ARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFK 795



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 36/207 (17%), Positives = 87/207 (42%), Gaps = 3/207 (1%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
            K  + P + +Y  LI    ++ KV  A+   +   +  ++P   T + ++  C ++   
Sbjct: 556 VKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERT 615

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
              +  +  +   N++PN+  +  +I    +      A  L +D+K   + P ++ Y ++
Sbjct: 616 EEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSL 675

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY---YEQLKSAGG 179
           + G      V+ A ++ +EM    ++P+   ++ LI        ++K      ++ S   
Sbjct: 676 IKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNV 735

Query: 180 QITKYVFMALINAYTTCGEFEKARQVV 206
              K  +  +I  Y   G   +A +++
Sbjct: 736 HPNKITYTVMIGGYARDGNVTEASRLL 762


>gi|90399139|emb|CAJ86163.1| H0913C04.4 [Oryza sativa Indica Group]
 gi|125550286|gb|EAY96108.1| hypothetical protein OsI_17985 [Oryza sativa Indica Group]
          Length = 900

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 123/278 (44%), Gaps = 4/278 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I  ++ +Y  LI     L     A  + E+M++  L P     N ++ A  +    +   
Sbjct: 469 IKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAI 528

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            I   +    ++P++  FR +I       D  SA   LD ++    +PT   YNA++ G 
Sbjct: 529 CILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGL 588

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITK 183
            RK  VQ A+ VL +M  A + P+  T++ ++   +   DI K   Y+ ++K +G ++  
Sbjct: 589 VRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDV 648

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE-VKSALVSALASHGRTSDAIIVYEE 242
           Y++  L+ A    G  + A  V  +       R+  + + L+   A  G   +A  + ++
Sbjct: 649 YIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQ 708

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           +KE G         + I      G++ R  +++EE+ D
Sbjct: 709 MKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVD 746



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 78/408 (19%), Positives = 167/408 (40%), Gaps = 30/408 (7%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y  +I   C    +  A ++V +M +  +    +  +S++H        N    ++  + 
Sbjct: 371 YSNIIHAHCQSGNMERAEELVCEMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLK 430

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
               KP+  ++  +++L VKI     A S+  +++   +      Y+ ++ G+    D  
Sbjct: 431 ECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFA 490

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALI 190
            A  + +EM ++ ++PD   ++ LI       N +  I   E+++    Q +   F  +I
Sbjct: 491 NAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPII 550

Query: 191 NAYTTCGEFEKARQVVLDAEIPVKSRSE------VKSALVSALASHGRTSDAIIVYEEIK 244
             Y   G+ + A    LD  + +  RS         +AL+  L    +   A+ V +++ 
Sbjct: 551 EGYAVAGDMKSA----LDT-LDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMS 605

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQLS 302
            AG          ++    + G++ +  +   ++ +    +D      L+  C +  ++ 
Sbjct: 606 IAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQ 665

Query: 303 SATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDP----PDVQIGLDLLQFIKDELGLP 358
           SA  + +         EM+ +      F      D      DV    DL++ +K++ G+P
Sbjct: 666 SALAVTR---------EMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKED-GVP 715

Query: 359 PSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAF 406
           P+       + AC  A D++RA  + +E  + GL  NV +Y  + K +
Sbjct: 716 PNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGW 763



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/239 (20%), Positives = 104/239 (43%), Gaps = 4/239 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           PS  SY  L+     + KV  AL + ++M    +  + +T + +++     ++F     I
Sbjct: 436 PSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAI 495

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    L+P+   +  +I    K+ + D A  +L+ +++  + P+   +  I+ GY  
Sbjct: 496 FEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAV 555

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYV 185
             D++ AL  L  M ++   P   T++ LIH    +  +   +   +++  AG    ++ 
Sbjct: 556 AGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHT 615

Query: 186 FMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
           +  ++  Y   G+  KA +      E  +K    +   L+ A    GR   A+ V  E+
Sbjct: 616 YTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREM 674



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 94/457 (20%), Positives = 178/457 (38%), Gaps = 45/457 (9%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           PS   +  +I Y       H A    E M    + P+     S++HA   + +       
Sbjct: 261 PSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSC 320

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    L+    T+  +IS   KI D  SA +L  + K         +Y+ I+  + +
Sbjct: 321 VEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQ 380

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS---NEEDIIKYYEQLKSAGGQITKYV 185
             +++ A  ++ EME+  +      +  ++H  +   NE   +  +E+LK  G + +   
Sbjct: 381 SGNMERAEELVCEMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIIS 440

Query: 186 FMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +  L+N Y   G+  KA  +  + E   +K  ++  S L++        ++A  ++EE+ 
Sbjct: 441 YGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEML 500

Query: 245 EAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDP--------------DYWMDGC 288
            +G  L+P   I   LIE     G ++R I +LE++                  Y + G 
Sbjct: 501 RSG--LQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGD 558

Query: 289 CRLILHCVRFKQLSSATD-------LLKQLKDKFKD-------DEMAM------EYHFSE 328
            +  L  +   + S           L+  L  K K        D+M++      E+ ++ 
Sbjct: 559 MKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTI 618

Query: 329 IFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYE 388
           I    A +   D+    +    IK E GL       + LL AC  +  ++ A  + +E  
Sbjct: 619 IMRGYAASG--DIGKAFEYFTKIK-ESGLKLDVYIYETLLRACCKSGRMQSALAVTREMS 675

Query: 389 NAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKD 425
              +P N   Y  +   +   G+   A  L+ +M +D
Sbjct: 676 FQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKED 712



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/388 (17%), Positives = 160/388 (41%), Gaps = 51/388 (13%)

Query: 78  KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALM 137
           KP+   F  MI    K  D   A +  ++++   + P A ++ +++  Y   +D++GAL 
Sbjct: 260 KPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALS 319

Query: 138 VLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYT 194
            ++EM+   ++    T+S LI      ++ +     +++ K+    +   ++  +I+A+ 
Sbjct: 320 CVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHC 379

Query: 195 TCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPR 253
             G  E+A ++V +  E  + +  +V  +++         +  ++V+E +KE  C  +P 
Sbjct: 380 QSGNMERAEELVCEMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKE--CGFKP- 436

Query: 254 AVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC---------CRLILHCVRFKQLSSA 304
           ++I+    LN   ++ ++ + L    +    M+ C           LI   +     ++A
Sbjct: 437 SIISYGCLLNLYVKIGKVAKALSISKE----MESCGIKHNNKTYSMLINGFIHLHDFANA 492

Query: 305 TDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTD--------------------------- 337
             + +++       + A+     E FC++   D                           
Sbjct: 493 FAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEG 552

Query: 338 ---PPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPY 394
                D++  LD L  ++   G  P+    + L+   V    ++RA  +  +   AG+  
Sbjct: 553 YAVAGDMKSALDTLDLMRRS-GCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITP 611

Query: 395 NVLSYLWMYKAFLASGNRKSASKLLSKM 422
           N  +Y  + + + ASG+   A +  +K+
Sbjct: 612 NEHTYTIIMRGYAASGDIGKAFEYFTKI 639



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 63/145 (43%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y+ L+   C   ++  AL V  +M   ++  +T   N ++       +      +   + 
Sbjct: 651 YETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMK 710

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
              + PN  T+ S I+   K  D   A  +++++ ++ L P    Y  ++ G+ R     
Sbjct: 711 EDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPD 770

Query: 134 GALMVLKEMEQANVKPDSQTFSYLI 158
            AL   +EM+ A +KPD  ++  L+
Sbjct: 771 RALKCFEEMKLAGLKPDEASYHCLV 795



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/163 (20%), Positives = 75/163 (46%), Gaps = 16/163 (9%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS 86
           V  A D+++QM +  + P+  T  S ++AC ++ +     ++   +    LKPN +T+ +
Sbjct: 699 VWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTT 758

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV------QGALMVLK 140
           +I    ++   D A    +++K   L P  + Y+ ++     +  V       G + V +
Sbjct: 759 LIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGSTYTGIISVCR 818

Query: 141 EMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK 183
           EM + ++  D +T    +H         ++  +++  GG +T+
Sbjct: 819 EMSENDLTVDLRT---AVHWS-------RWLHKIERTGGALTE 851


>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
 gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 143/316 (45%), Gaps = 10/316 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           ++P       LI+  C   K   AL++  Q +    V  T T N++LH   E+ + +   
Sbjct: 466 MSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAF 525

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           RI   I       +  ++ ++IS     K  D A+  LD++ +  L P    Y+ ++ G 
Sbjct: 526 RIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGL 585

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITK 183
           F    V+ A+    + ++  + PD  T+S +I  C      E+  ++++++ S   Q   
Sbjct: 586 FNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNT 645

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
            V+  LI AY   G    A ++  D +   +   S   ++L+  ++   R  +A +++EE
Sbjct: 646 VVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEE 705

Query: 243 IKEAGCNLEPRAV--IALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL--HCVRF 298
           ++  G  LEP      ALI+     G++ ++  LL E+H  +   +     ++     R 
Sbjct: 706 MRMEG--LEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARD 763

Query: 299 KQLSSATDLLKQLKDK 314
             ++ A+ LL ++++K
Sbjct: 764 GNVTEASRLLNEMREK 779



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 92/473 (19%), Positives = 174/473 (36%), Gaps = 87/473 (18%)

Query: 28  HVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC-------------- 73
           ++ALDV   +    + PS  T N +L +   + EF      + ++C              
Sbjct: 208 YLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCKGVSPDVYLFTTAI 267

Query: 74  --------------------HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLM 113
                                  + PN  TF ++I        +D A+   + + E  + 
Sbjct: 268 NAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGME 327

Query: 114 PTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKY 170
           PT   Y+ ++ G  R K +  A  VLKEM +    P+   ++ LI +     +    I+ 
Sbjct: 328 PTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEI 387

Query: 171 YEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD---------------------- 208
            + + S G  +T   +  LI  Y   G+ + A +++ +                      
Sbjct: 388 KDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCS 447

Query: 209 -----------AEIPVKSRS---EVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRA 254
                       E+ +++ S    + + L+S L  HG+ S A+ ++ +    G  ++ R 
Sbjct: 448 HLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRT 507

Query: 255 VIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQLSSATDLLKQL- 311
             AL+  L   G+L+   ++ +E+      MD      LI  C   K+L  A   L ++ 
Sbjct: 508 SNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMV 567

Query: 312 KDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKD--ELGLPPSRKCLDFLLG 369
           K   K D     Y +S + C +   +  +     + +QF  D    G+ P       ++ 
Sbjct: 568 KRGLKPD----NYTYSILICGLFNMNKVE-----EAIQFWDDCKRNGMLPDVYTYSVMID 618

Query: 370 ACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
            C  A   +     + E  +  +  N + Y  + +A+  SG    A +L   M
Sbjct: 619 GCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDM 671



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 74/166 (44%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P++  Y  LI   C   ++ +AL++ E M    + P++ T  S++            +
Sbjct: 641 VQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAK 700

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +    L+PN   + ++I    K+        LL ++   N+ P    Y  ++ GY
Sbjct: 701 LLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGY 760

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE 172
            R  +V  A  +L EM +  + PDS T+   I+    +  +++ ++
Sbjct: 761 ARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFK 806



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 36/207 (17%), Positives = 87/207 (42%), Gaps = 3/207 (1%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
            K  + P + +Y  LI    ++ KV  A+   +   +  ++P   T + ++  C ++   
Sbjct: 567 VKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERT 626

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
              +  +  +   N++PN+  +  +I    +      A  L +D+K   + P ++ Y ++
Sbjct: 627 EEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSL 686

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY---YEQLKSAGG 179
           + G      V+ A ++ +EM    ++P+   ++ LI        ++K      ++ S   
Sbjct: 687 IKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNV 746

Query: 180 QITKYVFMALINAYTTCGEFEKARQVV 206
              K  +  +I  Y   G   +A +++
Sbjct: 747 HPNKITYTVMIGGYARDGNVTEASRLL 773


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 106/479 (22%), Positives = 173/479 (36%), Gaps = 76/479 (15%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K E  P +  Y K+I+  C+      A+D + +M     +P+  T   +L  C    +  
Sbjct: 35  KEEFVPDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLG 94

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             +RI  M+      P+   F S++    +  D+  AY LL  + +    P   +YN ++
Sbjct: 95  RCKRILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILI 154

Query: 124 AGYFRK----KDV------------------------------------QGALMVLKEME 143
            G        KDV                                    + A  V++EM 
Sbjct: 155 GGICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMM 214

Query: 144 QANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFE 200
                PD+ T+S +I    N S  E   + ++++K  G     YV+  LI+++   G  E
Sbjct: 215 SKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIE 274

Query: 201 KARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALI 259
           +AR    + E    + + V  +AL+ A     + S A  VYE +   GC        ALI
Sbjct: 275 QARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALI 334

Query: 260 EHLNSEGELNRLIQLL-----EEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDK 314
           + L   G++ +  Q+      E V  PD  M            F+ +  A++        
Sbjct: 335 DGLCKAGKIEKASQIYKIMKKENVEIPDVDM-----------HFRVVDGASNEPNVFTYG 383

Query: 315 FKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNA 374
              D +   Y   E                 DLL+ +  E G  P+    D L+  C  A
Sbjct: 384 ALVDGLCKAYQVKE---------------ARDLLKSMSVE-GCEPNHVVYDALIDGCCKA 427

Query: 375 RDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVI 433
             L  A  ++      G   NV +Y  +            A K+LSKM ++      VI
Sbjct: 428 GKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVI 486



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/370 (19%), Positives = 144/370 (38%), Gaps = 68/370 (18%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P +++Y K+I Y C+  KV  A  + ++M +  + P      +++ +  ++      R  
Sbjct: 220 PDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNW 279

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +      PN  T+ ++I   +K +    A  + + +      P    Y A++ G  +
Sbjct: 280 FDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCK 339

Query: 129 KKDVQGALMVLKEMEQANVK-PDSQTFSYLIHNCSNEEDIIKYYE---------QLKSA- 177
              ++ A  + K M++ NV+ PD      ++   SNE ++  Y           Q+K A 
Sbjct: 340 AGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEAR 399

Query: 178 ---------GGQITKYVFMALINAYTTCGEFEKARQVV---------------------- 206
                    G +    V+ ALI+     G+ ++A++V                       
Sbjct: 400 DLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRL 459

Query: 207 -----LDAEIPVKSR---------SEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP 252
                LD  + V S+           + + ++  L   G+T +A  +   ++E GCN   
Sbjct: 460 FKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNV 519

Query: 253 RAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCR-------LILHCVRFKQLSSAT 305
               A+I+     G + + ++LL+++        GC         LI HC     L  A 
Sbjct: 520 VTYTAMIDGFGKSGRVEKCLELLQQMSS-----KGCAPNFVTYRVLINHCCSTGLLDEAH 574

Query: 306 DLLKQLKDKF 315
            LL+++K  +
Sbjct: 575 KLLEEMKQTY 584


>gi|115461420|ref|NP_001054310.1| Os04g0684500 [Oryza sativa Japonica Group]
 gi|113565881|dbj|BAF16224.1| Os04g0684500 [Oryza sativa Japonica Group]
          Length = 901

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 123/278 (44%), Gaps = 4/278 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I  ++ +Y  LI     L     A  + E+M++  L P     N ++ A  +    +   
Sbjct: 470 IKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAI 529

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            I   +    ++P++  FR +I       D  SA   LD ++    +PT   YNA++ G 
Sbjct: 530 CILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGL 589

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITK 183
            RK  VQ A+ VL +M  A + P+  T++ ++   +   DI K   Y+ ++K +G ++  
Sbjct: 590 VRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDV 649

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE-VKSALVSALASHGRTSDAIIVYEE 242
           Y++  L+ A    G  + A  V  +       R+  + + L+   A  G   +A  + ++
Sbjct: 650 YIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQ 709

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           +KE G         + I      G++ R  +++EE+ D
Sbjct: 710 MKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVD 747



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/408 (19%), Positives = 167/408 (40%), Gaps = 30/408 (7%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y  +I   C    +  A ++V +M +  +    +  +S++H        N    ++  + 
Sbjct: 372 YSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLK 431

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
               KP+  ++  +++L VKI     A S+  +++   +      Y+ ++ G+    D  
Sbjct: 432 ECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFA 491

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALI 190
            A  + +EM ++ ++PD   ++ LI       N +  I   E+++    Q +   F  +I
Sbjct: 492 NAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPII 551

Query: 191 NAYTTCGEFEKARQVVLDAEIPVKSRSE------VKSALVSALASHGRTSDAIIVYEEIK 244
             Y   G+ + A    LD  + +  RS         +AL+  L    +   A+ V +++ 
Sbjct: 552 EGYAVAGDMKSA----LDT-LDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMS 606

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQLS 302
            AG          ++    + G++ +  +   ++ +    +D      L+  C +  ++ 
Sbjct: 607 IAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQ 666

Query: 303 SATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDP----PDVQIGLDLLQFIKDELGLP 358
           SA  + +         EM+ +      F      D      DV    DL++ +K++ G+P
Sbjct: 667 SALAVTR---------EMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKED-GVP 716

Query: 359 PSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAF 406
           P+       + AC  A D++RA  + +E  + GL  NV +Y  + K +
Sbjct: 717 PNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGW 764



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/239 (20%), Positives = 104/239 (43%), Gaps = 4/239 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           PS  SY  L+     + KV  AL + ++M    +  + +T + +++     ++F     I
Sbjct: 437 PSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAI 496

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    L+P+   +  +I    K+ + D A  +L+ +++  + P+   +  I+ GY  
Sbjct: 497 FEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAV 556

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYV 185
             D++ AL  L  M ++   P   T++ LIH    +  +   +   +++  AG    ++ 
Sbjct: 557 AGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHT 616

Query: 186 FMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
           +  ++  Y   G+  KA +      E  +K    +   L+ A    GR   A+ V  E+
Sbjct: 617 YTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREM 675



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 94/457 (20%), Positives = 179/457 (39%), Gaps = 45/457 (9%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           PS   +  +I Y       H A    E M    + P+     S++HA   + +       
Sbjct: 262 PSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSC 321

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    L+    T+  +IS   KI D  SA +L  + K         +Y+ I+  + +
Sbjct: 322 VEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQ 381

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS---NEEDIIKYYEQLKSAGGQITKYV 185
             +++ A  +++EME+  +      +  ++H  +   NE   +  +E+LK  G + +   
Sbjct: 382 SGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIIS 441

Query: 186 FMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +  L+N Y   G+  KA  +  + E   +K  ++  S L++        ++A  ++EE+ 
Sbjct: 442 YGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEML 501

Query: 245 EAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDP--------------DYWMDGC 288
            +G  L+P   I   LIE     G ++R I +LE++                  Y + G 
Sbjct: 502 RSG--LQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGD 559

Query: 289 CRLILHCVRFKQLSSATD-------LLKQLKDKFKD-------DEMAM------EYHFSE 328
            +  L  +   + S           L+  L  K K        D+M++      E+ ++ 
Sbjct: 560 MKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTI 619

Query: 329 IFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYE 388
           I    A +   D+    +    IK E GL       + LL AC  +  ++ A  + +E  
Sbjct: 620 IMRGYAASG--DIGKAFEYFTKIK-ESGLKLDVYIYETLLRACCKSGRMQSALAVTREMS 676

Query: 389 NAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKD 425
              +P N   Y  +   +   G+   A  L+ +M +D
Sbjct: 677 FQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKED 713



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/388 (17%), Positives = 160/388 (41%), Gaps = 51/388 (13%)

Query: 78  KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALM 137
           KP+   F  MI    K  D   A +  ++++   + P A ++ +++  Y   +D++GAL 
Sbjct: 261 KPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALS 320

Query: 138 VLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYT 194
            ++EM+   ++    T+S LI      ++ +     +++ K+    +   ++  +I+A+ 
Sbjct: 321 CVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHC 380

Query: 195 TCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPR 253
             G  E+A ++V +  E  + +  +V  +++         +  ++V+E +KE  C  +P 
Sbjct: 381 QSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKE--CGFKP- 437

Query: 254 AVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC---------CRLILHCVRFKQLSSA 304
           ++I+    LN   ++ ++ + L    +    M+ C           LI   +     ++A
Sbjct: 438 SIISYGCLLNLYVKIGKVAKALSISKE----MESCGIKHNNKTYSMLINGFIHLHDFANA 493

Query: 305 TDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTD--------------------------- 337
             + +++       + A+     E FC++   D                           
Sbjct: 494 FAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEG 553

Query: 338 ---PPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPY 394
                D++  LD L  ++   G  P+    + L+   V    ++RA  +  +   AG+  
Sbjct: 554 YAVAGDMKSALDTLDLMRRS-GCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITP 612

Query: 395 NVLSYLWMYKAFLASGNRKSASKLLSKM 422
           N  +Y  + + + ASG+   A +  +K+
Sbjct: 613 NEHTYTIIMRGYAASGDIGKAFEYFTKI 640



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 63/145 (43%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y+ L+   C   ++  AL V  +M   ++  +T   N ++       +      +   + 
Sbjct: 652 YETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMK 711

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
              + PN  T+ S I+   K  D   A  +++++ ++ L P    Y  ++ G+ R     
Sbjct: 712 EDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPD 771

Query: 134 GALMVLKEMEQANVKPDSQTFSYLI 158
            AL   +EM+ A +KPD  ++  L+
Sbjct: 772 RALKCFEEMKLAGLKPDEASYHCLV 796



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/163 (20%), Positives = 75/163 (46%), Gaps = 16/163 (9%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS 86
           V  A D+++QM +  + P+  T  S ++AC ++ +     ++   +    LKPN +T+ +
Sbjct: 700 VWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTT 759

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV------QGALMVLK 140
           +I    ++   D A    +++K   L P  + Y+ ++     +  V       G + V +
Sbjct: 760 LIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGSTYTGIISVCR 819

Query: 141 EMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK 183
           EM + ++  D +T    +H         ++  +++  GG +T+
Sbjct: 820 EMSENDLTVDLRT---AVHWS-------RWLHKIERTGGALTE 852


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 134/304 (44%), Gaps = 40/304 (13%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEES 59
           MH+     P+  +Y +LI   C    VH A+ ++ +M++  L PS  T NS++H  C+  
Sbjct: 170 MHSN-SCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIG 228

Query: 60  YEFNLVRRIYPM------------------IC----------------HHNLKPNSETFR 85
           Y  +  R +  M                  +C                   +K N   + 
Sbjct: 229 YLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYT 288

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           ++I    K    D A SLLD +   + +P +S YNA++ G  +++ VQ AL++++ M Q 
Sbjct: 289 ALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQK 348

Query: 146 NVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
            +K    T++ LI     E D     +  +Q+ S+G Q   Y++ A I+A+ T G  ++A
Sbjct: 349 GLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEA 408

Query: 203 RQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEH 261
             ++ +  E  V   +   + ++ A    G  + A  V + + + GC+        LI+H
Sbjct: 409 EDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKH 468

Query: 262 LNSE 265
           L  E
Sbjct: 469 LLKE 472



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 128/287 (44%), Gaps = 12/287 (4%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVRR 67
           P+  +Y  +I   C   K+     ++++MV+  LVPS  T N+++   C+E       + 
Sbjct: 107 PNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGM-VEAAQE 165

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           I  ++  ++  PN  T+  +I    + K+   A +LL  + E  L P+   YN+++ G  
Sbjct: 166 ILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQC 225

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKY 184
           +   +  A  +L  M +  V PD  T+S  I     +   E+    +  LK  G +  + 
Sbjct: 226 KIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEV 285

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIP--VKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           ++ ALI+ Y   G+ + A   +LD  +       S   +AL+  L    +  +A+++ E 
Sbjct: 286 IYTALIDGYCKAGKMDDANS-LLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMES 344

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNR----LIQLLEEVHDPDYWM 285
           + + G          LI  +  EG+ +     L Q++   + PD ++
Sbjct: 345 MIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYI 391



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 92/417 (22%), Positives = 168/417 (40%), Gaps = 43/417 (10%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           +  SY  LI   C++ +V   +++ ++M + +  P+  T   I+HA  ES        ++
Sbjct: 38  NEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLF 97

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
             +     +PN  T+  MI+   K    +    +LD++ E  L+P+   YNA++ GY ++
Sbjct: 98  SEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKE 157

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQL-KSAGGQITKYV--F 186
             V+ A  +L  M   +  P+ +T++ LI     ++++ +    L K    ++T  V  +
Sbjct: 158 GMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTY 217

Query: 187 MALINAYTTCGEFEKA-RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
            +LI+     G  + A R + L  E  V       S  +  L   GR  +A +++  +KE
Sbjct: 218 NSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKE 277

Query: 246 AGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSAT 305
            G         ALI+     G+++    LL+ +   D                   S+  
Sbjct: 278 KGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDC--------------LPNSSTYN 323

Query: 306 DLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLD 365
            L+  L  + K                        VQ  L L++ +  + GL  +     
Sbjct: 324 ALIDGLCKERK------------------------VQEALLLMESMIQK-GLKCTVPTYT 358

Query: 366 FLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
            L+ A +   D   AH I  +  ++G   +V  Y     AF   GN K A  ++S M
Sbjct: 359 ILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMM 415



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 69/162 (42%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+S++Y  LI   C   KV  AL ++E M+Q  L  +  T   ++ A  +  +F+   RI
Sbjct: 317 PNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRI 376

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +     +P+   + + I       +   A  ++  + E  +MP A  Y  ++  Y  
Sbjct: 377 LDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGG 436

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY 170
              +  A  VLK M      P   T+S LI +   EE   KY
Sbjct: 437 LGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKY 478



 Score = 39.7 bits (91), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 77/425 (18%), Positives = 149/425 (35%), Gaps = 72/425 (16%)

Query: 95  KDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTF 154
            D +SA+S+ + + +         Y  ++ G      V   + + K+M + +  P  +T+
Sbjct: 18  NDVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTY 77

Query: 155 SYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AE 210
           + ++H         + I  + +++  G +   + +  +INA     + E+ R+++ +  E
Sbjct: 78  TVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVE 137

Query: 211 IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNR 270
             +       +AL+      G    A  + + +    CN   R    LI     +  ++R
Sbjct: 138 KGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHR 197

Query: 271 LIQLLEE----------------VHD-----------------------PDYW-----MD 286
            + LL +                +H                        PD W     +D
Sbjct: 198 AMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFID 257

Query: 287 GCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLD 346
             C+         ++  A  L   LK+K       +     + +C+    D  +      
Sbjct: 258 TLCKK-------GRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDAN-----S 305

Query: 347 LLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAF 406
           LL  +  E  LP S      + G C   R ++ A L+ +     GL   V +Y  +  A 
Sbjct: 306 LLDRMLTEDCLPNSSTYNALIDGLC-KERKVQEALLLMESMIQKGLKCTVPTYTILIVAM 364

Query: 407 LASGNRKSASKLLSKM------PKDDPHVRFVIQAC-----KQTYTIPSLQKERGFEKDR 455
           L  G+   A ++L +M      P    +  F+   C     K+   + S+  ERG   D 
Sbjct: 365 LKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDA 424

Query: 456 DTLLL 460
            T  L
Sbjct: 425 LTYTL 429


>gi|125592120|gb|EAZ32470.1| hypothetical protein OsJ_16686 [Oryza sativa Japonica Group]
          Length = 879

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 123/278 (44%), Gaps = 4/278 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I  ++ +Y  LI     L     A  + E+M++  L P     N ++ A  +    +   
Sbjct: 448 IKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAI 507

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            I   +    ++P++  FR +I       D  SA   LD ++    +PT   YNA++ G 
Sbjct: 508 CILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGL 567

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITK 183
            RK  VQ A+ VL +M  A + P+  T++ ++   +   DI K   Y+ ++K +G ++  
Sbjct: 568 VRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDV 627

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE-VKSALVSALASHGRTSDAIIVYEE 242
           Y++  L+ A    G  + A  V  +       R+  + + L+   A  G   +A  + ++
Sbjct: 628 YIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQ 687

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           +KE G         + I      G++ R  +++EE+ D
Sbjct: 688 MKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVD 725



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/408 (19%), Positives = 167/408 (40%), Gaps = 30/408 (7%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y  +I   C    +  A ++V +M +  +    +  +S++H        N    ++  + 
Sbjct: 350 YSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLK 409

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
               KP+  ++  +++L VKI     A S+  +++   +      Y+ ++ G+    D  
Sbjct: 410 ECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFA 469

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALI 190
            A  + +EM ++ ++PD   ++ LI       N +  I   E+++    Q +   F  +I
Sbjct: 470 NAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPII 529

Query: 191 NAYTTCGEFEKARQVVLDAEIPVKSRSE------VKSALVSALASHGRTSDAIIVYEEIK 244
             Y   G+ + A    LD  + +  RS         +AL+  L    +   A+ V +++ 
Sbjct: 530 EGYAVAGDMKSA----LDT-LDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMS 584

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQLS 302
            AG          ++    + G++ +  +   ++ +    +D      L+  C +  ++ 
Sbjct: 585 IAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQ 644

Query: 303 SATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDP----PDVQIGLDLLQFIKDELGLP 358
           SA  + +         EM+ +      F      D      DV    DL++ +K++ G+P
Sbjct: 645 SALAVTR---------EMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKED-GVP 694

Query: 359 PSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAF 406
           P+       + AC  A D++RA  + +E  + GL  NV +Y  + K +
Sbjct: 695 PNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGW 742



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/239 (20%), Positives = 104/239 (43%), Gaps = 4/239 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           PS  SY  L+     + KV  AL + ++M    +  + +T + +++     ++F     I
Sbjct: 415 PSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAI 474

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    L+P+   +  +I    K+ + D A  +L+ +++  + P+   +  I+ GY  
Sbjct: 475 FEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAV 534

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYV 185
             D++ AL  L  M ++   P   T++ LIH    +  +   +   +++  AG    ++ 
Sbjct: 535 AGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHT 594

Query: 186 FMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
           +  ++  Y   G+  KA +      E  +K    +   L+ A    GR   A+ V  E+
Sbjct: 595 YTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREM 653



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 94/457 (20%), Positives = 179/457 (39%), Gaps = 45/457 (9%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           PS   +  +I Y       H A    E M    + P+     S++HA   + +       
Sbjct: 240 PSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSC 299

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    L+    T+  +IS   KI D  SA +L  + K         +Y+ I+  + +
Sbjct: 300 VEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQ 359

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS---NEEDIIKYYEQLKSAGGQITKYV 185
             +++ A  +++EME+  +      +  ++H  +   NE   +  +E+LK  G + +   
Sbjct: 360 SGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIIS 419

Query: 186 FMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +  L+N Y   G+  KA  +  + E   +K  ++  S L++        ++A  ++EE+ 
Sbjct: 420 YGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEML 479

Query: 245 EAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDP--------------DYWMDGC 288
            +G  L+P   I   LIE     G ++R I +LE++                  Y + G 
Sbjct: 480 RSG--LQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGD 537

Query: 289 CRLILHCVRFKQLSSATD-------LLKQLKDKFKD-------DEMAM------EYHFSE 328
            +  L  +   + S           L+  L  K K        D+M++      E+ ++ 
Sbjct: 538 MKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTI 597

Query: 329 IFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYE 388
           I    A +   D+    +    IK E GL       + LL AC  +  ++ A  + +E  
Sbjct: 598 IMRGYAASG--DIGKAFEYFTKIK-ESGLKLDVYIYETLLRACCKSGRMQSALAVTREMS 654

Query: 389 NAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKD 425
              +P N   Y  +   +   G+   A  L+ +M +D
Sbjct: 655 FQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKED 691



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 69/388 (17%), Positives = 160/388 (41%), Gaps = 51/388 (13%)

Query: 78  KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALM 137
           KP+   F  MI    K  D   A +  ++++   + P A ++ +++  Y   +D++GAL 
Sbjct: 239 KPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALS 298

Query: 138 VLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYT 194
            ++EM+   ++    T+S LI      ++ +     +++ K+    +   ++  +I+A+ 
Sbjct: 299 CVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHC 358

Query: 195 TCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPR 253
             G  E+A ++V +  E  + +  +V  +++         +  ++V+E +KE  C  +P 
Sbjct: 359 QSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKE--CGFKP- 415

Query: 254 AVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC---------CRLILHCVRFKQLSSA 304
           ++I+    LN   ++ ++ + L    +    M+ C           LI   +     ++A
Sbjct: 416 SIISYGCLLNLYVKIGKVAKALSISKE----MESCGIKHNNKTYSMLINGFIHLHDFANA 471

Query: 305 TDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTD--------------------------- 337
             + +++       + A+     E FC++   D                           
Sbjct: 472 FAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEG 531

Query: 338 ---PPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPY 394
                D++  LD L  ++   G  P+    + L+   V    ++RA  +  +   AG+  
Sbjct: 532 YAVAGDMKSALDTLDLMRRS-GCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITP 590

Query: 395 NVLSYLWMYKAFLASGNRKSASKLLSKM 422
           N  +Y  + + + ASG+   A +  +K+
Sbjct: 591 NEHTYTIIMRGYAASGDIGKAFEYFTKI 618



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 63/145 (43%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y+ L+   C   ++  AL V  +M   ++  +T   N ++       +      +   + 
Sbjct: 630 YETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMK 689

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
              + PN  T+ S I+   K  D   A  +++++ ++ L P    Y  ++ G+ R     
Sbjct: 690 EDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPD 749

Query: 134 GALMVLKEMEQANVKPDSQTFSYLI 158
            AL   +EM+ A +KPD  ++  L+
Sbjct: 750 RALKCFEEMKLAGLKPDEASYHCLV 774



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/163 (20%), Positives = 75/163 (46%), Gaps = 16/163 (9%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS 86
           V  A D+++QM +  + P+  T  S ++AC ++ +     ++   +    LKPN +T+ +
Sbjct: 678 VWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTT 737

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV------QGALMVLK 140
           +I    ++   D A    +++K   L P  + Y+ ++     +  V       G + V +
Sbjct: 738 LIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGSTYTGIISVCR 797

Query: 141 EMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK 183
           EM + ++  D +T    +H         ++  +++  GG +T+
Sbjct: 798 EMSENDLTVDLRT---AVHWS-------RWLHKIERTGGALTE 830


>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19440, chloroplastic; Flags: Precursor
          Length = 838

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 143/316 (45%), Gaps = 10/316 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           ++P       LI+  C   K   AL++  Q +    V  T T N++LH   E+ + +   
Sbjct: 479 MSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAF 538

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           RI   I       +  ++ ++IS     K  D A+  LD++ +  L P    Y+ ++ G 
Sbjct: 539 RIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGL 598

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITK 183
           F    V+ A+    + ++  + PD  T+S +I  C      E+  ++++++ S   Q   
Sbjct: 599 FNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNT 658

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
            V+  LI AY   G    A ++  D +   +   S   ++L+  ++   R  +A +++EE
Sbjct: 659 VVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEE 718

Query: 243 IKEAGCNLEPRAV--IALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL--HCVRF 298
           ++  G  LEP      ALI+     G++ ++  LL E+H  +   +     ++     R 
Sbjct: 719 MRMEG--LEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARD 776

Query: 299 KQLSSATDLLKQLKDK 314
             ++ A+ LL ++++K
Sbjct: 777 GNVTEASRLLNEMREK 792



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 92/473 (19%), Positives = 174/473 (36%), Gaps = 87/473 (18%)

Query: 28  HVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC-------------- 73
           ++ALDV   +    + PS  T N +L +   + EF      + ++C              
Sbjct: 221 YLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCKGVSPDVYLFTTAI 280

Query: 74  --------------------HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLM 113
                                  + PN  TF ++I        +D A+   + + E  + 
Sbjct: 281 NAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGME 340

Query: 114 PTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKY 170
           PT   Y+ ++ G  R K +  A  VLKEM +    P+   ++ LI +     +    I+ 
Sbjct: 341 PTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEI 400

Query: 171 YEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD---------------------- 208
            + + S G  +T   +  LI  Y   G+ + A +++ +                      
Sbjct: 401 KDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCS 460

Query: 209 -----------AEIPVKSRS---EVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRA 254
                       E+ +++ S    + + L+S L  HG+ S A+ ++ +    G  ++ R 
Sbjct: 461 HLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRT 520

Query: 255 VIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQLSSATDLLKQL- 311
             AL+  L   G+L+   ++ +E+      MD      LI  C   K+L  A   L ++ 
Sbjct: 521 SNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMV 580

Query: 312 KDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKD--ELGLPPSRKCLDFLLG 369
           K   K D     Y +S + C +   +  +     + +QF  D    G+ P       ++ 
Sbjct: 581 KRGLKPD----NYTYSILICGLFNMNKVE-----EAIQFWDDCKRNGMLPDVYTYSVMID 631

Query: 370 ACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
            C  A   +     + E  +  +  N + Y  + +A+  SG    A +L   M
Sbjct: 632 GCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDM 684



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 74/166 (44%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P++  Y  LI   C   ++ +AL++ E M    + P++ T  S++            +
Sbjct: 654 VQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAK 713

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +    L+PN   + ++I    K+        LL ++   N+ P    Y  ++ GY
Sbjct: 714 LLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGY 773

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE 172
            R  +V  A  +L EM +  + PDS T+   I+    +  +++ ++
Sbjct: 774 ARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFK 819



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 36/207 (17%), Positives = 87/207 (42%), Gaps = 3/207 (1%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
            K  + P + +Y  LI    ++ KV  A+   +   +  ++P   T + ++  C ++   
Sbjct: 580 VKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERT 639

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
              +  +  +   N++PN+  +  +I    +      A  L +D+K   + P ++ Y ++
Sbjct: 640 EEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSL 699

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY---YEQLKSAGG 179
           + G      V+ A ++ +EM    ++P+   ++ LI        ++K      ++ S   
Sbjct: 700 IKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNV 759

Query: 180 QITKYVFMALINAYTTCGEFEKARQVV 206
              K  +  +I  Y   G   +A +++
Sbjct: 760 HPNKITYTVMIGGYARDGNVTEASRLL 786


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 91/433 (21%), Positives = 174/433 (40%), Gaps = 76/433 (17%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y KL+       ++  A+ V+++MV    VP   T+  ++ +       +  R +
Sbjct: 37  PDFLTYTKLVHGLSKARRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDAREL 96

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              + H  +  N+ T+ +++    K +  D A +L++ + E    PT   YN+I+ G+ R
Sbjct: 97  VEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCR 156

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMA 188
            + V  A   +++M      PD  T++ LI       D+ +  E L    G++T+  F  
Sbjct: 157 ARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELL----GEVTRRGFTP 212

Query: 189 LINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC 248
            I  Y+T                           ++  L   GR  DA+ ++EE+  A  
Sbjct: 213 DIVTYST---------------------------VIDGLCKAGRLRDAVDIFEEMSCA-- 243

Query: 249 NLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATD 306
              P A+   +LI      G+++  I+LL ++ D     D C   +   V +  L SA  
Sbjct: 244 ---PTAITYNSLIGGYCRAGDMDEAIRLLGKMVD-----DKCAPDV---VTYTTLMSAFC 292

Query: 307 LLKQLKDKFKDDEMAMEYHFSEIFCQ-IATTDPPDV----------------QIGLDLLQ 349
            + +L D +            E+F Q +A    PDV                +  L+LL+
Sbjct: 293 KMGRLDDAY------------ELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLE 340

Query: 350 FIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLAS 409
            I    G PP+    + ++     A  +++A  +  ++ + G   N ++Y  +      +
Sbjct: 341 EITRR-GCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRA 399

Query: 410 GNRKSASKLLSKM 422
           G    A + L ++
Sbjct: 400 GRTDQALQYLDQL 412



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/247 (20%), Positives = 99/247 (40%), Gaps = 35/247 (14%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           ++   P++ +Y  LI   C    +  A+ ++ +MV  +  P   T  +++ A  +    +
Sbjct: 239 EMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLD 298

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               ++  +  + L P+  TF S++         + A  LL+++      PT   YN ++
Sbjct: 299 DAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVV 358

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQ 180
            GY +   V+ A  ++ +       P++ T++ L+  C      +  ++Y +QL S GG 
Sbjct: 359 DGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGP 418

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
               V M  I                                ++ AL   GRT DA+  Y
Sbjct: 419 CPTSVAMYAI--------------------------------ILDALCRDGRTDDAVQFY 446

Query: 241 EEIKEAG 247
           EE+ + G
Sbjct: 447 EEMIQRG 453


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 102/457 (22%), Positives = 190/457 (41%), Gaps = 38/457 (8%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTET----INSILHACEESYEFNL 64
           P+S +Y  LI   C+  +V  ALD++E+M++  + P+  T    I ++     E     L
Sbjct: 308 PNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIEL 367

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
           V R+    C    +PN +T+ ++IS   ++   + A  L   + +  L+P    YNA++ 
Sbjct: 368 VARMKKRGC----RPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALIN 423

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQI 181
                     AL +   ME      ++QT++ +I       DI K    +E++   G   
Sbjct: 424 ELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLP 483

Query: 182 TKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
           T   +  LIN Y T G    A +++ L  E   +      + LVS  +  G+   A   +
Sbjct: 484 TVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYF 543

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDYWMDGCCRLILHCV 296
           +E+ E G N  P +   LI+  + +G+++  + LLE +     +P+  ++    +I    
Sbjct: 544 QEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPN--VESYNAVINGLS 601

Query: 297 RFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELG 356
           +  + S A  +  ++ ++     +       +  C+   T     Q    +   ++    
Sbjct: 602 KENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRT-----QFAFKIFHDMEKRKC 656

Query: 357 LPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSAS 416
           LP        + G C   +    A ++ KE E  GL  + +++  +   F+  G    A 
Sbjct: 657 LPNLYTYSSLIYGLCQEGKA-DEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAF 715

Query: 417 KLLSKMPKDDPHVRFVIQACK---QTYTI--PSLQKE 448
            LL +M         V   CK   +TY++    LQKE
Sbjct: 716 LLLRRM---------VDVGCKPNYRTYSVLLKGLQKE 743



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 76/152 (50%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  SY  LI       KV +AL ++E+M +    P+ E+ N++++   +   F+   
Sbjct: 551 LNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAE 610

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +I   +    L PN  T+ ++I    +      A+ +  D+++   +P    Y++++ G 
Sbjct: 611 KICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGL 670

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            ++     A ++LKEME+  + PD  TF+ LI
Sbjct: 671 CQEGKADEAEILLKEMERKGLAPDEVTFTSLI 702



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 90/456 (19%), Positives = 182/456 (39%), Gaps = 59/456 (12%)

Query: 20  YSCDLLKVHVA-LDVVE-------QMVQGELVPSTETINSILHACEESYEFNLVRRIYPM 71
           YSC+ L + +A  ++VE       QM+   + PS  T N++++   +  +      I   
Sbjct: 206 YSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQ 265

Query: 72  ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131
           I  ++L P+  T+ S+I  + + ++ D A+ + D + +    P +  Y+ ++ G   +  
Sbjct: 266 IFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGR 325

Query: 132 VQGALMVLKEMEQANV-----------------------------------KPDSQTFSY 156
           V  AL +L+EM +  +                                   +P+ QT++ 
Sbjct: 326 VDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTA 385

Query: 157 LIHNCS---NEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPV 213
           LI   S     E  I  Y ++   G       + ALIN     G F  A ++    E   
Sbjct: 386 LISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHG 445

Query: 214 K-SRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN--- 269
             + ++  + ++  L   G    A++++E++ + G          LI    ++G +N   
Sbjct: 446 SLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAA 505

Query: 270 RLIQLLEEVH-DPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSE 328
           RL+ L++E   +PD W      L+    ++ +L SA+   +++ +   +          +
Sbjct: 506 RLLDLMKENGCEPDEWTYN--ELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLID 563

Query: 329 IFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYE 388
                  +    V I L LL+ + +E+G  P+ +  + ++           A  I  +  
Sbjct: 564 -----GHSKDGKVDIALSLLERM-EEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMA 617

Query: 389 NAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424
             GL  NV++Y  +      +G  + A K+   M K
Sbjct: 618 EQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEK 653



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 111/256 (43%), Gaps = 38/256 (14%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA----CEESYEFNL 64
           P+  +Y  LI   C   K   A  ++++M +  L P   T  S++          + F L
Sbjct: 658 PNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLL 717

Query: 65  VRRIYPMICHHNLKPNSETFRSMI------------------------SLNVKIKDFDSA 100
           +RR+  + C    KPN  T+  ++                        S + K  +F+  
Sbjct: 718 LRRMVDVGC----KPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIV 773

Query: 101 YSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQT-FSYLIH 159
            +LL  + E+   PT   Y+ +++G  RK     A  ++K+M++    PD +  +S LI 
Sbjct: 774 SNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIA 833

Query: 160 NCSNEE--DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRS 217
           +C N E    +K +  +++ G Q+   ++ ALI A    G+ E+A Q + D  +  +  +
Sbjct: 834 HCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEA-QALFDNMLEKEWNA 892

Query: 218 E--VKSALVSALASHG 231
           +  V + LV  L   G
Sbjct: 893 DEIVWTVLVDGLLKEG 908


>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 126/281 (44%), Gaps = 11/281 (3%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  LI   C    VH A+ ++++M++  LVP   T NS++     +   +   R+
Sbjct: 291 PNVYTYTALIKGLCRK-NVHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRL 349

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
             ++    L P+  T+   I    K    + A  L D L E  +     MY+ ++ GY +
Sbjct: 350 LSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCK 409

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CS--NEEDIIKYYEQLKSAGGQITKYV 185
              V  A  + ++M   N  P++ TF+ LIH  CS  N ++ +  ++Q+   G + T Y 
Sbjct: 410 VGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYT 469

Query: 186 FMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
           F  LI      G+F+ A    ++++   E PV   +   +A +    S G+  +A  +  
Sbjct: 470 FNILIGRMLKQGDFDDAHKCLQKMMSSGEKPV---ARTYNAFIEVYCSAGKVQEAEDMMV 526

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPD 282
           ++KE G   +     +LI+     G       +L+ + D D
Sbjct: 527 QMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDAD 567



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 113/269 (42%), Gaps = 8/269 (2%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y  LI   C + KV  A  + E+M+     P+  T N+++H    +        ++  + 
Sbjct: 400 YSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMV 459

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
              LKP   TF  +I   +K  DFD A+  L  +      P A  YNA +  Y     VQ
Sbjct: 460 KMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQ 519

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKS---AGGQITKYVFMALI 190
            A  ++ +M++  V PD  T++ LI            ++ LKS   A  + + + F++LI
Sbjct: 520 EAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLI 579

Query: 191 NAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNL 250
                   F+K   V    E  V+S S       S +         I ++EE+++ GC  
Sbjct: 580 KQL-----FDKRYVVEKSGETGVESVSNFGDVPGSNMWKMMEFDIVIELFEEMEKHGCTP 634

Query: 251 EPRAVIALIEHLNSEGELNRLIQLLEEVH 279
           + +    LI  +     L   ++LL+++ 
Sbjct: 635 DSKCYEKLISGICKVENLGIALKLLDQMQ 663



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/260 (21%), Positives = 109/260 (41%), Gaps = 4/260 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  LI   C    +  A  ++  M +  LVP   T    +    +S      R
Sbjct: 323 LVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEAR 382

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R++  +    +  N   +  +I    K+   D A  L + +   N  P A  +NA++ G 
Sbjct: 383 RLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGL 442

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITK 183
               +++ AL +  +M +  +KP   TF+ LI       + +D  K  +++ S+G +   
Sbjct: 443 CSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVA 502

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             + A I  Y + G+ ++A  +++   E  V       ++L+ A    G T  A  V + 
Sbjct: 503 RTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKS 562

Query: 243 IKEAGCNLEPRAVIALIEHL 262
           + +A C       ++LI+ L
Sbjct: 563 MFDADCEPSHHTFLSLIKQL 582



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 58/294 (19%), Positives = 117/294 (39%), Gaps = 41/294 (13%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEE---SYE-FNL 64
           P + +Y   I   C   KV  A D++ QM +  + P   T  S++ A  +   +Y  F++
Sbjct: 500 PVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDV 559

Query: 65  VRRIYPMICHHNLKPNSETFRSMI-----------------------------SLNVKIK 95
           ++ ++   C    +P+  TF S+I                             S   K+ 
Sbjct: 560 LKSMFDADC----EPSHHTFLSLIKQLFDKRYVVEKSGETGVESVSNFGDVPGSNMWKMM 615

Query: 96  DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFS 155
           +FD    L +++++    P +  Y  +++G  + +++  AL +L +M++  + P    F+
Sbjct: 616 EFDIVIELFEEMEKHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFN 675

Query: 156 YLIHNCSNEE---DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIP 212
            +I  C   +   +     E +  +G          LI      GE E+   V       
Sbjct: 676 AVISCCCKLQKYGEAANIVEDMICSGHSPQLEHCKTLICGLYEEGETERGNSVFKKLRGC 735

Query: 213 VKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
             +  E+    L+  +   G   +   ++EE+++ GCN  PR    L + L+ +
Sbjct: 736 GYNDDEIAWKILIDGMLKQGLVEEFSQLFEEMEKNGCNFSPRTYSILTQKLHGK 789



 Score = 41.6 bits (96), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 69/151 (45%), Gaps = 2/151 (1%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           TP S  Y+KLI+  C +  + +AL +++QM +  + PS    N+++  C +  ++     
Sbjct: 633 TPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVISCCCKLQKYGEAAN 692

Query: 68  IYP-MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           I   MIC  +  P  E  +++I    +  + +   S+   L+          +  ++ G 
Sbjct: 693 IVEDMICSGH-SPQLEHCKTLICGLYEEGETERGNSVFKKLRGCGYNDDEIAWKILIDGM 751

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYL 157
            ++  V+    + +EME+       +T+S L
Sbjct: 752 LKQGLVEEFSQLFEEMEKNGCNFSPRTYSIL 782


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 108/245 (44%), Gaps = 4/245 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  L+   C       AL V+  M      P+  T N+++ A   + E +   
Sbjct: 153 VAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAE 212

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R+  M+    LKPN  TF S+++   K    + A  + D++ +  L P    YN ++ GY
Sbjct: 213 RLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGY 272

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITK 183
            +      AL V  EM +  + PD  TF+ LIH      N E  +    +++  G Q+ +
Sbjct: 273 CKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNE 332

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             F ALI+ +   G  + A   V +  +  ++      +AL++     GR  +A  +  E
Sbjct: 333 ITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVRE 392

Query: 243 IKEAG 247
           ++  G
Sbjct: 393 MEAKG 397



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 137/308 (44%), Gaps = 32/308 (10%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
            I PS   Y  LI   C + ++  A ++V +M    + P   T ++IL A  ++ + +  
Sbjct: 362 RIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSA 421

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            ++   +  + + P++ T+ S+I +  + K    A+ L  ++  + L P    Y +++ G
Sbjct: 422 FQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDG 481

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS----------------NEEDI-- 167
           + ++ +V+ AL +  EM +A V PD  T+S LI+  S                +EE +  
Sbjct: 482 HCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPA 541

Query: 168 -IKYYEQLKSAGGQITKYVFMALINAYTTCG---EFEKARQVVLDAEIPVKSRSEVKSAL 223
            IKY   ++       K V +AL+  +   G   E +K  Q +LD    +     V S L
Sbjct: 542 NIKYDALMRCCRNAELKSV-LALLKGFCMKGLMNEADKVYQSILDRNWNLD--GSVYSVL 598

Query: 224 VSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY 283
           +      G    A+  ++++ + G      + I+LI  L  +G +    Q+++++ +   
Sbjct: 599 IHGHCREGNVMKALSFHKQMLQCGFAPNSTSTISLIRGLFEKGMVVEADQVIQQLLN--- 655

Query: 284 WMDGCCRL 291
               CC L
Sbjct: 656 ----CCSL 659


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 102/457 (22%), Positives = 191/457 (41%), Gaps = 38/457 (8%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTET----INSILHACEESYEFNL 64
           P+S +Y  LI   C+  +V  ALD++E+M++  + P+  T    I ++     E     L
Sbjct: 266 PNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIEL 325

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
           V R+    C    +PN +T+ ++IS   ++   + A  L   + +  L+P    YNA++ 
Sbjct: 326 VARMKKRGC----RPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALIN 381

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQI 181
                     AL +   ME      ++QT++ +I       DI K    +E++   G   
Sbjct: 382 ELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLP 441

Query: 182 TKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
           T   +  LIN Y T G    A +++ L  E   +      + LVS  +  G+   A   +
Sbjct: 442 TVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYF 501

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDYWMDGCCRLILHCV 296
           +E+ E G N  P +  ALI+  + +G+++  + LL+ +     +P+  ++    +I    
Sbjct: 502 QEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPN--VESYNAVINGLS 559

Query: 297 RFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELG 356
           +  + S A  +  ++ ++     +       +  C+   T     Q    +   ++    
Sbjct: 560 KENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRT-----QFAFKIFHDMEKRKC 614

Query: 357 LPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSAS 416
           LP        + G C   +    A ++ KE E  GL  + +++  +   F+  G    A 
Sbjct: 615 LPNLYTYSSLIYGLCQEGKA-DEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAF 673

Query: 417 KLLSKMPKDDPHVRFVIQACK---QTYTI--PSLQKE 448
            LL +M         V   CK   +TY++    LQKE
Sbjct: 674 LLLRRM---------VDMGCKPNYRTYSVLLKGLQKE 701



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 90/456 (19%), Positives = 182/456 (39%), Gaps = 59/456 (12%)

Query: 20  YSCDLLKVHVA-LDVVE-------QMVQGELVPSTETINSILHACEESYEFNLVRRIYPM 71
           YSC+ L + +A  ++VE       QM+   + PS  T N++++   +  +      I   
Sbjct: 164 YSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQ 223

Query: 72  ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131
           I  ++L P+  T+ S+I  + + ++ D A+ + D + +    P +  Y+ ++ G   +  
Sbjct: 224 IFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGR 283

Query: 132 VQGALMVLKEMEQANV-----------------------------------KPDSQTFSY 156
           V  AL +L+EM +  +                                   +P+ QT++ 
Sbjct: 284 VDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTA 343

Query: 157 LIHNCS---NEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPV 213
           LI   S     E  I  Y ++   G       + ALIN     G F  A ++    E   
Sbjct: 344 LISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHG 403

Query: 214 K-SRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN--- 269
             + ++  + ++  L   G    A++++E++ + G          LI    ++G +N   
Sbjct: 404 SLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAA 463

Query: 270 RLIQLLEEVH-DPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSE 328
           RL+ L++E   +PD W      L+    ++ +L SA+   +++ +   +          +
Sbjct: 464 RLLDLMKENGCEPDEWTYN--ELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALID 521

Query: 329 IFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYE 388
                  +    V I L LL+ + +E+G  P+ +  + ++           A  I  +  
Sbjct: 522 -----GHSKDGKVDIALSLLKRM-EEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMV 575

Query: 389 NAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424
             GL  NV++Y  +      +G  + A K+   M K
Sbjct: 576 EQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEK 611



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 76/152 (50%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  SY  LI       KV +AL ++++M +    P+ E+ N++++   +   F+   
Sbjct: 509 LNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAE 568

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +I   +    L PN  T+ ++I    +      A+ +  D+++   +P    Y++++ G 
Sbjct: 569 KICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGL 628

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            ++     A ++LKEME+  + PD  TF+ LI
Sbjct: 629 CQEGKADEAEILLKEMERKGLAPDEVTFTSLI 660


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 90/421 (21%), Positives = 178/421 (42%), Gaps = 47/421 (11%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
            P    +  L +   +L  +  A +   +M +  + P   + N++LH   +    +L R+
Sbjct: 182 VPGFGVFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRK 241

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
            +  +    +K +  T+  MI    K  D + A SL   +KE    P    YN+++ G+ 
Sbjct: 242 FFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHG 301

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKY 184
           +   +   + + ++M+ A+  PD  T++ LI+     E + K +E   ++K+ G +    
Sbjct: 302 KLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVV 361

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEI 243
            +   I+A+   G  ++A +  +D      + +E   ++L+ A    G  ++A+ + EEI
Sbjct: 362 TYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEI 421

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW--MDGCCRLILHCVRFKQL 301
            +AG  L      AL++ L  EG +    ++   + +       +    L+   ++ K++
Sbjct: 422 LQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEM 481

Query: 302 SSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSR 361
             A D+LK++K+K                C                   IK +L L  + 
Sbjct: 482 EYAKDILKEMKEK----------------C-------------------IKPDLLLYGT- 505

Query: 362 KCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSK 421
                L G C  +R L+ A L+  E + +G+  N + Y  +  A+  SG    A  LL +
Sbjct: 506 ----ILWGLCNESR-LEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEE 560

Query: 422 M 422
           M
Sbjct: 561 M 561



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 134/317 (42%), Gaps = 45/317 (14%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           ++ +TP+  +Y  LI  +C    +  AL +VE+++Q  +  +  T  ++L    E     
Sbjct: 388 RVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMK 447

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMP--------- 114
               ++  + +  + PN ET+ +++   +K K+ + A  +L ++KE  + P         
Sbjct: 448 EAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTIL 507

Query: 115 --------------------------TASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
                                      A +Y  +M  YF+      AL +L+EM    + 
Sbjct: 508 WGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLI 567

Query: 149 PDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
               T+  LI         ++ + ++ ++   G Q    V+ AL++       FE A+++
Sbjct: 568 ATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKL 627

Query: 206 ---VLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEH 261
              +LD   +P K      +AL+     HG   +A+ + + + E G  L+  A  ALI  
Sbjct: 628 FDEMLDKGMMPDKI---AYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWG 684

Query: 262 LNSEGELNRLIQLLEEV 278
           L+  G++ +   LL+E+
Sbjct: 685 LSHSGQVQKARNLLDEM 701



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/315 (20%), Positives = 126/315 (40%), Gaps = 43/315 (13%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I  S  +Y  +I Y C    + +A  +  QM +    P   T NS++    +    +   
Sbjct: 251 IKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECI 310

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            I+  +   +  P+  T+ ++I+   K +    A+  L ++K   L P    Y+  +  +
Sbjct: 311 CIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAF 370

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH-NC--SNEEDIIKYYEQLKSAGGQITK 183
            ++  +Q A+    +M +  + P+  T++ LI  NC   N  + +K  E++  AG ++  
Sbjct: 371 CKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNV 430

Query: 184 YVFMALINAYTTCGEFEKARQV---VLDAEIPVKSRSEVKSALVS--------------- 225
             + AL++     G  ++A +V   +L+A   V    E  +ALV                
Sbjct: 431 VTYTALLDGLCEEGRMKEAEEVFRAMLNA--GVAPNQETYTALVHGFIKAKEMEYAKDIL 488

Query: 226 --------------------ALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
                                L +  R  +A ++  EIKE+G N        L++     
Sbjct: 489 KEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKS 548

Query: 266 GELNRLIQLLEEVHD 280
           G+    + LLEE+ D
Sbjct: 549 GQATEALTLLEEMLD 563



 Score = 43.1 bits (100), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 66/154 (42%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           L +  +  +Y  LI   C    V  A+    +M +  L P+     +++    ++  F +
Sbjct: 564 LGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEV 623

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
            ++++  +    + P+   + ++I  N+K  +   A +L D + E+ +      Y A++ 
Sbjct: 624 AKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIW 683

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
           G      VQ A  +L EM    V PD   +  LI
Sbjct: 684 GLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLI 717



 Score = 38.9 bits (89), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 67/361 (18%), Positives = 140/361 (38%), Gaps = 57/361 (15%)

Query: 113 MPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS--NEEDII-K 169
           +P   +++A+ +       ++ A     +M +  V P  ++ + L+H  S     D+  K
Sbjct: 182 VPGFGVFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRK 241

Query: 170 YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALAS 229
           +++ + +AG + + + +  +I+     G+ E AR +                        
Sbjct: 242 FFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSL------------------------ 277

Query: 230 HGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC 289
                     + ++KEAG   +     +LI+     G L+  I + E++ D D   D   
Sbjct: 278 ----------FTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVIT 327

Query: 290 -RLILHCV-RFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDL 347
              +++C  +F+++  A + L ++K       +     F + FC+             + 
Sbjct: 328 YNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQ--------EA 379

Query: 348 LQFIKD--ELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKA 405
           ++F  D   + L P+      L+ A   A +L  A  + +E   AG+  NV++Y  +   
Sbjct: 380 IKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDG 439

Query: 406 FLASGNRKSASKLLSKMPKDDPHVRFVIQACKQTYT--IPSLQKERGFEKDRDTLLLHKE 463
               G  K A ++   M          +   ++TYT  +    K +  E  +D L   KE
Sbjct: 440 LCEEGRMKEAEEVFRAMLNAG------VAPNQETYTALVHGFIKAKEMEYAKDILKEMKE 493

Query: 464 R 464
           +
Sbjct: 494 K 494


>gi|224126121|ref|XP_002329666.1| predicted protein [Populus trichocarpa]
 gi|222870547|gb|EEF07678.1| predicted protein [Populus trichocarpa]
          Length = 821

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 99/444 (22%), Positives = 190/444 (42%), Gaps = 28/444 (6%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P + +Y  L+           AL ++++M      P   T N ++ A   +  +     +
Sbjct: 313 PGTVTYNALLQVFGKAGIYSEALSIMKEMEDNNCPPDAVTYNELVAAYVRAGFYEEGAAL 372

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +  + +KPN+ T+ +MI+   +    D A SL D +KE    P    YNAI+    +
Sbjct: 373 IDTMTENGIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGK 432

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYV 185
           K   +  + +L +M+     P+  T++ ++  C N+   + + + ++++KS G +  +  
Sbjct: 433 KSQSEEMMKILCDMKVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDT 492

Query: 186 FMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHG--RTSDAIIVYEE 242
           F  LI A   CG    A ++  +  E          +AL++ALA  G  RT++++I  ++
Sbjct: 493 FNTLITASGRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNALARRGDWRTAESVI--KD 550

Query: 243 IKEAGCNLEPRAVIALIEHLNSEG---ELNRLIQLLEEVHDPDYWMDGCCR-LILHCVRF 298
           +K  G      +   ++      G    +NR+ + + + H    WM    R LIL   + 
Sbjct: 551 MKNKGFKPSETSYSLILNSYAKGGYVKGINRIEKDIYDGHIFPSWM--LLRTLILANFKC 608

Query: 299 KQLSSATDLLKQL-KDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGL 357
           + L+      + L K  +K D +      S +F +    D        +++  I+ E GL
Sbjct: 609 RALAGMERAFQALQKHGYKPDLVVFNSMLS-MFSRKNMHDRAH-----EIMHLIQ-ECGL 661

Query: 358 PPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASK 417
            P     + L+       +  +A  I +E +N+G   +++SY  + K F   G    A +
Sbjct: 662 QPDLVTYNSLMDLYARGGECWKAEEILRELQNSGDKSDLISYNTVIKGFCRQGLMHEALR 721

Query: 418 LLSKMPKDDPHVRFVIQACKQTYT 441
            LS+M      +   I+ C  TY 
Sbjct: 722 TLSEM------ISRGIRPCIVTYN 739



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/226 (17%), Positives = 103/226 (45%), Gaps = 6/226 (2%)

Query: 31  LDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL 90
           L ++++M    L     T ++++ AC      +  +  +  +      P + T+ +++ +
Sbjct: 265 LGLLDEMRSKGLGFDEFTCSTVISACGREGLLDEAKEFFVGLKSQGYAPGTVTYNALLQV 324

Query: 91  NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD 150
             K   +  A S++ ++++ N  P A  YN ++A Y R    +    ++  M +  +KP+
Sbjct: 325 FGKAGIYSEALSIMKEMEDNNCPPDAVTYNELVAAYVRAGFYEEGAALIDTMTENGIKPN 384

Query: 151 SQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVL 207
           + T++ +I+     +  +  +  Y+Q+K +G       + A++       + E+  +++ 
Sbjct: 385 AVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEEMMKILC 444

Query: 208 DAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEP 252
           D ++   + + +  + ++S   + G       V++E+K   C  EP
Sbjct: 445 DMKVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEMKS--CGFEP 488



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/189 (19%), Positives = 77/189 (40%), Gaps = 35/189 (18%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSI-------------- 52
           I P++ +Y  +I       +V  AL + +QM +    P+  T N+I              
Sbjct: 381 IKPNAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEEMM 440

Query: 53  ---------------------LHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLN 91
                                L  C        V+R++  +     +P+ +TF ++I+ +
Sbjct: 441 KILCDMKVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDTFNTLITAS 500

Query: 92  VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151
            +      A  + D++ E    P+ + YNA++    R+ D + A  V+K+M+    KP  
Sbjct: 501 GRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNALARRGDWRTAESVIKDMKNKGFKPSE 560

Query: 152 QTFSYLIHN 160
            ++S ++++
Sbjct: 561 TSYSLILNS 569



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 70/366 (19%), Positives = 142/366 (38%), Gaps = 52/366 (14%)

Query: 97  FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR-KKDVQGALMVLKEMEQANVKPDSQTFS 155
           ++ A ++ + + E  L PT   YN ++  Y +  +     L +L EM    +  D  T S
Sbjct: 225 YERAVAIFEKMNESGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSKGLGFDEFTCS 284

Query: 156 YLIHNCSNE---EDIIKYYEQLKSAG---GQIT--------------------------- 182
            +I  C  E   ++  +++  LKS G   G +T                           
Sbjct: 285 TVISACGREGLLDEAKEFFVGLKSQGYAPGTVTYNALLQVFGKAGIYSEALSIMKEMEDN 344

Query: 183 -----KYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDA 236
                   +  L+ AY   G +E+   ++    E  +K  +   + +++A     +   A
Sbjct: 345 NCPPDAVTYNELVAAYVRAGFYEEGAALIDTMTENGIKPNAVTYTTMINAYGRAAQVDKA 404

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCV 296
           + +Y+++KE+GC        A++  L  + +   ++++L      D  +DGC    +   
Sbjct: 405 LSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEEMMKIL-----CDMKVDGCAPNRITWN 459

Query: 297 RFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDL-LQFIKDEL 355
               +     + K +K  F++ +        + F  + T      + G D+  + I DE+
Sbjct: 460 TMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDTFNTLITASG---RCGSDIDAEKIYDEM 516

Query: 356 ---GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNR 412
              G  PS    + LL A     D + A  + K+ +N G   +  SY  +  ++   G  
Sbjct: 517 LEAGFTPSVATYNALLNALARRGDWRTAESVIKDMKNKGFKPSETSYSLILNSYAKGGYV 576

Query: 413 KSASKL 418
           K  +++
Sbjct: 577 KGINRI 582


>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
 gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
          Length = 764

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 96/459 (20%), Positives = 170/459 (37%), Gaps = 82/459 (17%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K +  P+  +Y  +I   C    V  A  V + M +  L P+  TIN ++    ++ + +
Sbjct: 263 KRDAMPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLD 322

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               I+  + +    P+  TF S+I    K    D AY + + + + + +P   +Y +++
Sbjct: 323 EACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLI 382

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK 183
             +F+    +    + KEM ++   PD                                 
Sbjct: 383 RNFFKCDRKEDGHKMYKEMMRSGCSPD--------------------------------- 409

Query: 184 YVFMALINAYTTC----GEFEKARQVVLDAEIPVKS---RSEVKSALVSALASHGRTSDA 236
              + L+N Y  C    GE EK R   L  EI  +     +   S L+ +L   G   + 
Sbjct: 410 ---LMLLNTYMDCVFKAGETEKGR--ALFEEIKARGFLPDTRSYSILIHSLVKAGFARET 464

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV----HDPDYWMDGCCRLI 292
             +Y  +K+ GC L+ RA   +I+     G++N+  QLLEE+    H P     G   ++
Sbjct: 465 YELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYG--SVV 522

Query: 293 LHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTD--------------P 338
               +  +L  A  L ++ K    +    +     + F ++   D               
Sbjct: 523 DGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLT 582

Query: 339 PDVQI----------------GLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHL 382
           P+V                   L   Q +KD L   P++     L+      R   +A +
Sbjct: 583 PNVYTWNCLLDGLVKAEEINEALVCFQSMKD-LKCTPNQITYCILINGLCKVRKFNKAFV 641

Query: 383 IWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSK 421
            W+E +  GL  N ++Y  M      SGN   AS L  +
Sbjct: 642 FWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFER 680



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 125/300 (41%), Gaps = 25/300 (8%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVE---QMVQGELVPSTETINSILHACEESYEFNLV 65
           P + SY  LI     L+K   A +  E    M     V  T   N+++    +S + N  
Sbjct: 443 PDTRSYSILIH---SLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKA 499

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            ++   +      P   T+ S++    KI   D AY L ++ K   +     +Y++++ G
Sbjct: 500 YQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDG 559

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI------IKYYEQLKSAGG 179
           + +   V  A +V++EM Q  + P+  T++ L+      E+I       +  + LK    
Sbjct: 560 FGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPN 619

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEI---PVKSRSEVKSALVSALASHGRTSDA 236
           QIT   +  LIN      +F KA   V   E+    +K  +   +A++S LA  G  + A
Sbjct: 620 QIT---YCILINGLCKVRKFNKA--FVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQA 674

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCV 296
             ++E  + +G   +  +  A+IE L+         QL EE       + GC      CV
Sbjct: 675 SSLFERFRASGGIPDSASYNAMIEGLSIANRALDAYQLFEETR-----LKGCSIHTKTCV 729



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 93/225 (41%), Gaps = 5/225 (2%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           KV +A     +M    LVP   T  S++    ++   +    I+  +  +   P +  + 
Sbjct: 146 KVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYN 205

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           +MI        FD AYSLL+  +    +P+   YN I+    +K     AL + +EM++ 
Sbjct: 206 TMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKR- 264

Query: 146 NVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
           +  P+  T++ +I       N E   K  + +K AG          +I+      + ++A
Sbjct: 265 DAMPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEA 324

Query: 203 RQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEA 246
             +    +  V S       +L+  L   GR  DA  +YE + +A
Sbjct: 325 CSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDA 369



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/240 (18%), Positives = 107/240 (44%), Gaps = 4/240 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P++ +  +L+       K+  A D+++ M   +  P+     +++ A  E  E + +  +
Sbjct: 24  PTNYTCVELVASCVKSRKLIEAFDLLQMMRHFKFRPAFSAYTTLIGALSEVGESDRMLAL 83

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +     + N     ++I +  +    D+A SLLD++K         +YN  +  + +
Sbjct: 84  FNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNTFDADIVLYNVCIDCFGK 143

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYV 185
              V  A     EM+   + PD  T++ ++      +  ++ ++ +EQ++        Y 
Sbjct: 144 VGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYA 203

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIK 244
           +  +I  Y + G+F++A  ++          S V  + +++ L   G+T  A+ ++EE+K
Sbjct: 204 YNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMK 263



 Score = 42.0 bits (97), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 43/261 (16%), Positives = 112/261 (42%), Gaps = 18/261 (6%)

Query: 31  LDVVEQMVQGELV-----PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
            D +EQ++ GE+      P+  T   ++ +C +S +      +  M+ H   +P    + 
Sbjct: 7   FDYLEQIL-GEMSIAGFGPTNYTCVELVASCVKSRKLIEAFDLLQMMRHFKFRPAFSAYT 65

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           ++I    ++ + D   +L + ++E+       +   ++  + R+  V  AL +L EM+  
Sbjct: 66  TLIGALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSN 125

Query: 146 NVKPDSQTFSYLIHNCSNEEDII----KYYEQLKSAGGQITKYVFMALINAYTTCGEFEK 201
               D   ++  I +C  +   +    K++ ++K+ G       + +++         ++
Sbjct: 126 TFDADIVLYNVCI-DCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDE 184

Query: 202 A----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIA 257
           A     Q+  + ++P    +   + ++    S G+  +A  + E  +  GC     A   
Sbjct: 185 AVEIFEQMEQNRQVPC---AYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNC 241

Query: 258 LIEHLNSEGELNRLIQLLEEV 278
           ++  L  +G+ ++ +++ EE+
Sbjct: 242 ILTCLGKKGKTDKALRIFEEM 262


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 92/200 (46%), Gaps = 4/200 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  L+   C   ++  A+ VV  M      P+  T N+++ A   + E +   
Sbjct: 148 VAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAE 207

Query: 67  RIYPMICHH-NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           R+  ++    N KPN  TF SM++   K    + A  + D++    L P    YN +++G
Sbjct: 208 RVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSG 267

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQIT 182
           Y +   +  +L V  EM Q  + PD  TF+ LIH      N E  +    Q++  G ++ 
Sbjct: 268 YCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMN 327

Query: 183 KYVFMALINAYTTCGEFEKA 202
           +  F ALI+ +   G  + A
Sbjct: 328 EVTFTALIDGFCKKGFLDDA 347



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 78/365 (21%), Positives = 146/365 (40%), Gaps = 64/365 (17%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   SY  L++  C +  +H +L V  +M Q  LVP   T  S++HA  ++       
Sbjct: 254 LAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAV 313

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +    L+ N  TF ++I    K    D A   ++++++  + P+   YNA++ GY
Sbjct: 314 ALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGY 373

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-------------------------- 160
            +   +  A  +++EME   VKPD  T+S +I                            
Sbjct: 374 CKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDA 433

Query: 161 ----------CSNEE--DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA----RQ 204
                     C  +   D  + +E +   G Q  ++ +  LI+ +   G  EKA     +
Sbjct: 434 ITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDE 493

Query: 205 VVLDAEIPVKSRSEVKSALVSALASHGRTSDA---------------IIVYEEIKEAGCN 249
           ++    +P        S L++ L+   RT +A                I Y+ +      
Sbjct: 494 MIRKGVLP---DVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSK 550

Query: 250 LEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL---HCVRFKQLSSATD 306
            E ++V+AL++    +G +    ++ + + D ++ +DG    IL   HC R   +  A  
Sbjct: 551 AEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHC-RGGNVRKALS 609

Query: 307 LLKQL 311
             KQ+
Sbjct: 610 FHKQM 614



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/424 (18%), Positives = 165/424 (38%), Gaps = 45/424 (10%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           PS    N++L A  ++      RR    +  H + PN  T+  ++         + A  +
Sbjct: 116 PSVPAYNAVLLALSDA-SLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGV 174

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM-EQANVKPDSQTFSYLIHN-- 160
           + D++     P A  YN ++A + R  ++ GA  V+  M E+ N KP+  TF+ +++   
Sbjct: 175 VGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLC 234

Query: 161 -CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEV 219
                E   K ++++   G       +  L++ Y   G   ++  V  +    +  R  V
Sbjct: 235 KAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSE----MTQRGLV 290

Query: 220 K-----SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQL 274
                 ++L+ A    G    A+ +  +++E G  +      ALI+    +G L+  +  
Sbjct: 291 PDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLA 350

Query: 275 LEEVHDPDYWMDGCC--RLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQ 332
           +EE+          C   LI    +  ++  A +L+++++ K    ++         +C+
Sbjct: 351 VEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCK 410

Query: 333 IATTDP--------------PDVQIGLDLLQFIKDE---------------LGLPPSRKC 363
           +   D               PD      L++ + +E               LG+ P    
Sbjct: 411 VGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFT 470

Query: 364 LDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMP 423
              L+       ++++A  +  E    G+  +V++Y  +      S   K A +LL K+ 
Sbjct: 471 YTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLY 530

Query: 424 KDDP 427
            +DP
Sbjct: 531 HEDP 534



 Score = 42.0 bits (97), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 79/182 (43%), Gaps = 17/182 (9%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L + P   +Y  LI   C    V  AL + ++M++  ++P   T + +++   +S    
Sbjct: 461 QLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTK 520

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTA------- 116
              R+   + H +  P++  + +++ L     +F S  +LL       LM  A       
Sbjct: 521 EAHRLLFKLYHEDPVPDNIKYDALM-LCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSM 579

Query: 117 ---------SMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI 167
                    S+Y+ ++ G+ R  +V+ AL   K+M ++   P+S +   L+     E  +
Sbjct: 580 LDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMV 639

Query: 168 IK 169
           ++
Sbjct: 640 VE 641


>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 907

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 93/443 (20%), Positives = 181/443 (40%), Gaps = 20/443 (4%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L  +PS A+   L+       KV  AL++V+++ +  + P+    N+++ +  +   F+
Sbjct: 325 RLRFSPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFD 384

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               ++  +    L PN  T+  +I +  +    D+A S L ++ +M L P+   YN+++
Sbjct: 385 EAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLI 444

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQ 180
            G+ +  D+  A  ++ EM    ++P   T++ L+    ++  I   ++ Y ++   G  
Sbjct: 445 NGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIV 504

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
            + Y F  L++     G    A ++  + AE  VK      + ++      G  S A   
Sbjct: 505 PSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEF 564

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRL-ILHC-VR 297
             E+ E G   +  +   LI  L   G+ +     ++ +H  +  ++  C   +LH   R
Sbjct: 565 LNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCR 624

Query: 298 FKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPP----DVQIGLDLLQFIKD 353
             +L  A  + +         +M +     ++ C     D      D ++ L LL+ + D
Sbjct: 625 EGKLEEALSVCQ---------DMGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLLKEMHD 675

Query: 354 ELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRK 413
             GL P       ++ A     D K A  IW    N G   N ++Y  +      +G   
Sbjct: 676 R-GLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVN 734

Query: 414 SASKLLSKMPKDDPHVRFVIQAC 436
            A  L SKM   +     V   C
Sbjct: 735 EAEILCSKMRPGNSVPNQVTYGC 757



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 76/403 (18%), Positives = 171/403 (42%), Gaps = 34/403 (8%)

Query: 37  MVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKD 96
           M +  L+P   T++++LH   +   F L   ++  + +  ++P+   +  +I    ++KD
Sbjct: 183 MTKVSLLPEVRTLSALLHGLVKFRHFGLAMELFDDMINVGIRPDVYIYTGVIRSLCELKD 242

Query: 97  FDSAYSLLDDLK----EMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
              A  ++  ++    ++N++P    YN ++ G  +K+ V  A+ + K++    +KPD  
Sbjct: 243 LSRAKEMIVQMEATGCDVNIVP----YNVLIDGLCKKQKVWEAVGIKKDLAGKELKPDVV 298

Query: 153 TFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD- 208
           T+  L+      ++    ++  +++       ++    +L+      G+ E+A  +V   
Sbjct: 299 TYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEALNLVKRV 358

Query: 209 AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGEL 268
           AE  V     V +AL+ +L       +A ++++ + + G          LI+     G+L
Sbjct: 359 AEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKL 418

Query: 269 NRLIQLLEEVHD----PDYW-----MDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDE 319
           +  +  L E+ D    P  +     ++G      HC +F  +S+A  L+ ++ +K  +  
Sbjct: 419 DTALSFLGEMIDMGLKPSVYPYNSLING------HC-KFGDISAAESLMAEMINKKLEPT 471

Query: 320 MAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKR 379
           +         +C         +   L L   +  + G+ PS      LL     A  ++ 
Sbjct: 472 VVTYTSLMGGYCS-----KGKINKALRLYHEMTGK-GIVPSIYTFTTLLSGLFRAGLIRD 525

Query: 380 AHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           A  ++ E     +  N ++Y  M + +   GN   A + L++M
Sbjct: 526 AVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEM 568



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 104/273 (38%), Gaps = 12/273 (4%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQM----VQGELVPSTETINSILHACEESYEFNLVRRIY 69
           Y  L+   C   K+  AL V + M    V  +LV     I+  L   +      L++ ++
Sbjct: 615 YTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLLKEMH 674

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
                  LKP+   + SMI    K  DF  A+ + D +     +P    Y A++ G  + 
Sbjct: 675 ----DRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKA 730

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA---GGQITKYVF 186
             V  A ++  +M   N  P+  T+   +   +     +K   +L +A   G       +
Sbjct: 731 GFVNEAEILCSKMRPGNSVPNQVTYGCFLDILTKGVGDMKKAVELHNAILKGLLANTATY 790

Query: 187 MALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
             LI  +   G  E+A +++       V       + ++S L        AI ++  + E
Sbjct: 791 NMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSMTE 850

Query: 246 AGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            G   +  A   LI      GE+ +  +L  E+
Sbjct: 851 KGIRPDRVAYNTLIHGCCVAGEMGKATELRNEM 883



 Score = 45.4 bits (106), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 37/203 (18%), Positives = 84/203 (41%), Gaps = 3/203 (1%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           A+  + P+  +Y  +I   C+   +  A + + +M++  +VP T +   ++H    + + 
Sbjct: 534 AEWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQA 593

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           +  +     +   N + N   +  ++    +    + A S+  D+    +      Y  +
Sbjct: 594 SEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVL 653

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGG 179
           + G  + KD +  L +LKEM    +KPD   ++ +I   S   D       ++ + + G 
Sbjct: 654 IDGSLKHKDRKVFLGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGC 713

Query: 180 QITKYVFMALINAYTTCGEFEKA 202
              +  + A+IN     G   +A
Sbjct: 714 VPNEVTYTAVINGLCKAGFVNEA 736



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 10/156 (6%)

Query: 18  ITYSC--DLLKVHV-----ALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVRRIY 69
           +TY C  D+L   V     A+++   +++G L+ +T T N ++   C +         I 
Sbjct: 753 VTYGCFLDILTKGVGDMKKAVELHNAILKG-LLANTATYNMLIRGFCRQGRMEEASELIT 811

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
            MI    + P+  T+ +MIS   +  D   A  L + + E  + P    YN ++ G    
Sbjct: 812 RMI-GDGVSPDCITYTTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVA 870

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE 165
            ++  A  +  EM +  +KP+++T    I N S+ +
Sbjct: 871 GEMGKATELRNEMLRQGLKPNTETSETTISNDSSSK 906



 Score = 38.9 bits (89), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 20/83 (24%), Positives = 38/83 (45%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           ++P   +Y  +I+  C    V  A+++   M +  + P     N+++H C  + E     
Sbjct: 818 VSPDCITYTTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKAT 877

Query: 67  RIYPMICHHNLKPNSETFRSMIS 89
            +   +    LKPN+ET  + IS
Sbjct: 878 ELRNEMLRQGLKPNTETSETTIS 900


>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
 gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
          Length = 701

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 87/429 (20%), Positives = 180/429 (41%), Gaps = 33/429 (7%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + PS  +Y  +I   C L K+  ++++  +M + E  P   T +S++H   ++  FN   
Sbjct: 251 VYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAE 310

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++  +    L P+  T+ +M+S   +    +  + L + + + N     S YN ++ G 
Sbjct: 311 KVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCCNIVS-YNMLIQGL 369

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITK 183
              K V+ A+   + + +  +K DS T+  LI+  C N      ++  E+ ++ G  +  
Sbjct: 370 LDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAENEGADLDT 429

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSR----SEVKSALVSALASHGRTSDAIIV 239
           + + ++++     G  E+A +++   +   K+R    S V ++L++      +  +AI V
Sbjct: 430 FAYSSMVHGLCKKGMLEQAVELIHQMK---KNRRKLNSHVFNSLINGYVRAFKLEEAISV 486

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELN----RLIQLLEEVHDPD-----YWMDGCCR 290
             E+K   C     +   +I  L      +     L ++LEE   PD       +DG C 
Sbjct: 487 LREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLC- 545

Query: 291 LILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQF 350
                 R +++  A +L  Q  +K    ++ M        C     D     + L++   
Sbjct: 546 ------RGEKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVD-----VALEIFTQ 594

Query: 351 IKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASG 410
           ++ ++   P     + ++     A D   A  IW     AGL  +++SY   +K   +  
Sbjct: 595 MR-QVNCVPDLVTHNTIMEGLYKAGDCVEALKIWDRILEAGLQPDIISYNITFKGLCSCA 653

Query: 411 NRKSASKLL 419
               A + L
Sbjct: 654 RVSDAIEFL 662



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 89/403 (22%), Positives = 162/403 (40%), Gaps = 48/403 (11%)

Query: 30  ALDVVEQMVQ-GELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
           AL++ + MV      P   + NS+L+A  ES ++      +       + PN +T+  +I
Sbjct: 97  ALNLFQNMVDIFGCNPGIRSFNSMLNAFIESNQWREAELFFTYFQTAGMSPNLQTYNILI 156

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
            ++ K + F+    LL  + E  L P    Y  ++    +  ++  A+ +  EM    V 
Sbjct: 157 KISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLINALAKSGNLLDAVELFDEMSVRGVN 216

Query: 149 PDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKY----VFMALINAYTTCGEFEKARQ 204
           PD   ++ LI     + D +K  E  K    + + Y     +  +IN     G+ +++ +
Sbjct: 217 PDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIMINGLCKLGKLDESME 276

Query: 205 VVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
           +    +   KS      S+++  L+  G  + A  V++E+ E+G + + R   A++  L 
Sbjct: 277 MWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLF 336

Query: 264 SEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAME 323
             G+LN+  +L   +       + CC ++          S   L++ L D  K  E A+ 
Sbjct: 337 RTGKLNKCFELWNVMSK-----NNCCNIV----------SYNMLIQGLLDN-KKVEQAIC 380

Query: 324 YHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLL-GACVNARDLKRAHL 382
           Y                      LL     E GL         L+ G C N   L +A  
Sbjct: 381 Y--------------------WQLLH----ERGLKADSTTYGLLINGLCKNGY-LNKALR 415

Query: 383 IWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKD 425
           I +E EN G   +  +Y  M       G  + A +L+ +M K+
Sbjct: 416 ILEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKN 458



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 82/203 (40%), Gaps = 3/203 (1%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           +S  +  LI       K+  A+ V+ +M   +  P+  + N+I++   ++  F+      
Sbjct: 463 NSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSL 522

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
             +    LKP+  T+  +I    + +  D A +L        L P   M+N I+ G    
Sbjct: 523 KEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTA 582

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVF 186
           + V  AL +  +M Q N  PD  T + ++       D +   K ++++  AG Q     +
Sbjct: 583 QKVDVALEIFTQMRQVNCVPDLVTHNTIMEGLYKAGDCVEALKIWDRILEAGLQPDIISY 642

Query: 187 MALINAYTTCGEFEKARQVVLDA 209
                   +C     A + + DA
Sbjct: 643 NITFKGLCSCARVSDAIEFLYDA 665



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 70/164 (42%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  LI   C   KV +AL++  Q +   L P  +  N I+H    + + ++  
Sbjct: 530 LKPDMITYSLLIDGLCRGEKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVAL 589

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            I+  +   N  P+  T  +++    K  D   A  + D + E  L P    YN    G 
Sbjct: 590 EIFTQMRQVNCVPDLVTHNTIMEGLYKAGDCVEALKIWDRILEAGLQPDIISYNITFKGL 649

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY 170
                V  A+  L +     + P++ T++ L+    +++ +++Y
Sbjct: 650 CSCARVSDAIEFLYDALDRGILPNAPTWNVLVRAVVDDKPLMEY 693


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 92/200 (46%), Gaps = 4/200 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  L+   C   ++  A+ VV  M      P+  T N+++ A   + E +   
Sbjct: 6   VAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAE 65

Query: 67  RIYPMICHH-NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           R+  ++    N KPN  TF SM++   K    + A  + D++    L P    YN +++G
Sbjct: 66  RVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSG 125

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQIT 182
           Y +   +  +L V  EM Q  + PD  TF+ LIH      N E  +    Q++  G ++ 
Sbjct: 126 YCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMN 185

Query: 183 KYVFMALINAYTTCGEFEKA 202
           +  F ALI+ +   G  + A
Sbjct: 186 EVTFTALIDGFCKKGFLDDA 205



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 78/365 (21%), Positives = 146/365 (40%), Gaps = 64/365 (17%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   SY  L++  C +  +H +L V  +M Q  LVP   T  S++HA  ++       
Sbjct: 112 LAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAV 171

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +    L+ N  TF ++I    K    D A   ++++++  + P+   YNA++ GY
Sbjct: 172 ALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGY 231

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-------------------------- 160
            +   +  A  +++EME   VKPD  T+S +I                            
Sbjct: 232 CKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDA 291

Query: 161 ----------CSNEE--DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA----RQ 204
                     C  +   D  + +E +   G Q  ++ +  LI+ +   G  EKA     +
Sbjct: 292 ITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDE 351

Query: 205 VVLDAEIPVKSRSEVKSALVSALASHGRTSDA---------------IIVYEEIKEAGCN 249
           ++    +P        S L++ L+   RT +A                I Y+ +      
Sbjct: 352 MIRKGVLP---DVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSK 408

Query: 250 LEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL---HCVRFKQLSSATD 306
            E ++V+AL++    +G +    ++ + + D ++ +DG    IL   HC R   +  A  
Sbjct: 409 AEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHC-RGGNVRKALS 467

Query: 307 LLKQL 311
             KQ+
Sbjct: 468 FHKQM 472



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 73/394 (18%), Positives = 153/394 (38%), Gaps = 44/394 (11%)

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
            H + PN  T+  ++         + A  ++ D++     P A  YN ++A + R  ++ 
Sbjct: 3   RHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELD 62

Query: 134 GALMVLKEM-EQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMAL 189
           GA  V+  M E+ N KP+  TF+ +++        E   K ++++   G       +  L
Sbjct: 63  GAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTL 122

Query: 190 INAYTTCGEFEKARQVVLDAEIPVKSRSEVK-----SALVSALASHGRTSDAIIVYEEIK 244
           ++ Y   G   ++  V  +    +  R  V      ++L+ A    G    A+ +  +++
Sbjct: 123 LSGYCKVGCLHESLAVFSE----MTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMR 178

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQLS 302
           E G  +      ALI+    +G L+  +  +EE+          C   LI    +  ++ 
Sbjct: 179 ERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMD 238

Query: 303 SATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDP--------------PDVQIGLDLL 348
            A +L+++++ K    ++         +C++   D               PD      L+
Sbjct: 239 LARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLI 298

Query: 349 QFIKDE---------------LGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLP 393
           + + +E               LG+ P       L+       ++++A  +  E    G+ 
Sbjct: 299 RGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVL 358

Query: 394 YNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDP 427
            +V++Y  +      S   K A +LL K+  +DP
Sbjct: 359 PDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDP 392



 Score = 41.6 bits (96), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 79/182 (43%), Gaps = 17/182 (9%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L + P   +Y  LI   C    V  AL + ++M++  ++P   T + +++   +S    
Sbjct: 319 QLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTK 378

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTA------- 116
              R+   + H +  P++  + +++ L     +F S  +LL       LM  A       
Sbjct: 379 EAHRLLFKLYHEDPVPDNIKYDALM-LCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSM 437

Query: 117 ---------SMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI 167
                    S+Y+ ++ G+ R  +V+ AL   K+M ++   P+S +   L+     E  +
Sbjct: 438 LDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMV 497

Query: 168 IK 169
           ++
Sbjct: 498 VE 499


>gi|255566945|ref|XP_002524455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536243|gb|EEF37895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 486

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 115/246 (46%), Gaps = 15/246 (6%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL   E+M++  + P+  T+ S+L AC +S    +   +   I  H L+ N +   ++I 
Sbjct: 240 ALIFFEEMLRANVTPNMSTLLSVLSACAQSGSLKMGNWVSSWIEEHGLESNIKVMNALID 299

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K  D ++A  L + +K  N++     +N ++ GY      + AL + ++M Q+NV+P
Sbjct: 300 MYAKCGDLENALHLFEGIKNKNVIS----WNVMIGGYTHLSCYKEALGLFRQMLQSNVEP 355

Query: 150 DSQTFSYLIHNCSN------EEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203
           +  T   ++  C+N       + I  Y +  K+        ++ +LI+ Y  CG  E A 
Sbjct: 356 NDVTLLSILPACANLGALGLGKWIHAYID--KNMKNLANNALWTSLIDMYAKCGNIEVAN 413

Query: 204 QVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
           Q + D   P    S   +A++S  A HG+   AI ++  + + G   +    I ++   N
Sbjct: 414 Q-IFDGMNPKSLASW--NAMISGFAMHGQADLAISLFSRMTKEGLVPDNITFIGVLSACN 470

Query: 264 SEGELN 269
             G L+
Sbjct: 471 HAGLLD 476



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 9/110 (8%)

Query: 97  FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSY 156
            D A  L D++   +++     +NA++AGY +    + AL+  +EM +ANV P+  T   
Sbjct: 206 LDQALELFDEIPVRDVVS----WNAMIAGYTQSGRFEEALIFFEEMLRANVTPNMSTLLS 261

Query: 157 LIHNCSNEEDIIKYYEQLKSA----GGQITKYVFMALINAYTTCGEFEKA 202
           ++  C+ +   +K    + S     G +    V  ALI+ Y  CG+ E A
Sbjct: 262 VLSACA-QSGSLKMGNWVSSWIEEHGLESNIKVMNALIDMYAKCGDLENA 310


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 91/411 (22%), Positives = 172/411 (41%), Gaps = 22/411 (5%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+  V ++ +  + P+T T N IL          LVRR++  +      PN  TF  +I 
Sbjct: 141 AVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLFEQL----PAPNVFTFNIVID 196

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              K  +   A SL   +KEM  +P    +N+++ GY +  ++     +++EM ++  K 
Sbjct: 197 FLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKA 256

Query: 150 DSQTFSYLIHNC----SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           D  T++ LI NC       E    Y+  +K  G       F   ++A+   G   +A ++
Sbjct: 257 DVVTYNALI-NCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKL 315

Query: 206 VLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
                +   + +E   + L+      GR  DAI++ +E+   G  L       L++ L  
Sbjct: 316 FAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCK 375

Query: 265 EGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRF--KQLSSATDLLKQLKDKFKDDEMAM 322
           E ++     +L  +       +      L    F  K    A  LL ++K+K  + ++++
Sbjct: 376 ERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISL 435

Query: 323 EYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHL 382
                +  C +   D         LL  + DE GL P+      ++ AC  +  +  A  
Sbjct: 436 YGALIQGLCNVHKLDEAK-----SLLTKM-DESGLEPNYIIYTTMMDACFKSGKVPEAIA 489

Query: 383 IWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKD---DPHVR 430
           + ++  ++G   NV++Y  +      +G+   A    +KM +D   DP+V+
Sbjct: 490 MLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKM-RDLGLDPNVQ 539



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/317 (20%), Positives = 126/317 (39%), Gaps = 47/317 (14%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVR---RI 68
           +Y  LI   C   ++  A      M +  ++ +  T ++ + A C+E     LVR   ++
Sbjct: 260 TYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEG----LVREAMKL 315

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    +  N  T+  +I    K    D A  LLD++    +      Y  ++ G  +
Sbjct: 316 FAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCK 375

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYV 185
           ++ V  A  VL+ ME+A V+ +   ++ LIH      N E  +    ++K+ G ++   +
Sbjct: 376 ERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISL 435

Query: 186 FMALINAYTTCGEFEKARQVV------------------LDAEIPVKSRSEVKS------ 221
           + ALI       + ++A+ ++                  +DA        E  +      
Sbjct: 436 YGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKIL 495

Query: 222 ------------ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN 269
                       AL+  L   G   +AI  + ++++ G +   +A  AL++ L   G LN
Sbjct: 496 DSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLN 555

Query: 270 RLIQLLEEVHDPDYWMD 286
             +QL  E+      +D
Sbjct: 556 EAVQLFNEMVHKGMSLD 572



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/195 (20%), Positives = 82/195 (42%), Gaps = 3/195 (1%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y  LI   C++ K+  A  ++ +M +  L P+     +++ AC +S +      +   I 
Sbjct: 436 YGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKIL 495

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
               +PN  T+ ++I    K    D A S  + ++++ L P    Y A++ G  +   + 
Sbjct: 496 DSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLN 555

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKYVFMALI 190
            A+ +  EM    +  D   ++ L+       N  D      ++  +G Q+  + +   I
Sbjct: 556 EAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFI 615

Query: 191 NAYTTCGEFEKARQV 205
           + +       +AR+V
Sbjct: 616 SGFCNLNMMPEAREV 630


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 91/411 (22%), Positives = 172/411 (41%), Gaps = 22/411 (5%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+  V ++ +  + P+T T N IL          LVRR++  +      PN  TF  +I 
Sbjct: 141 AVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLFEQL----PAPNVFTFNIVID 196

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              K  +   A SL   +KEM  +P    +N+++ GY +  ++     +++EM ++  K 
Sbjct: 197 FLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKA 256

Query: 150 DSQTFSYLIHNC----SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           D  T++ LI NC       E    Y+  +K  G       F   ++A+   G   +A ++
Sbjct: 257 DVVTYNALI-NCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKL 315

Query: 206 VLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
                +   + +E   + L+      GR  DAI++ +E+   G  L       L++ L  
Sbjct: 316 FAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCK 375

Query: 265 EGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRF--KQLSSATDLLKQLKDKFKDDEMAM 322
           E ++     +L  +       +      L    F  K    A  LL ++K+K  + ++++
Sbjct: 376 ERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISL 435

Query: 323 EYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHL 382
                +  C +   D         LL  + DE GL P+      ++ AC  +  +  A  
Sbjct: 436 YGALIQGLCNVHKLDEAK-----SLLTKM-DESGLEPNYIIYTTMMDACFKSGKVPEAIA 489

Query: 383 IWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKD---DPHVR 430
           + ++  ++G   NV++Y  +      +G+   A    +KM +D   DP+V+
Sbjct: 490 MLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKM-RDLGLDPNVQ 539



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/317 (20%), Positives = 126/317 (39%), Gaps = 47/317 (14%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVR---RI 68
           +Y  LI   C   ++  A      M +  ++ +  T ++ + A C+E     LVR   ++
Sbjct: 260 TYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEG----LVREAMKL 315

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    +  N  T+  +I    K    D A  LLD++    +      Y  ++ G  +
Sbjct: 316 FAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCK 375

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYV 185
           ++ V  A  VL+ ME+A V+ +   ++ LIH      N E  +    ++K+ G ++   +
Sbjct: 376 ERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISL 435

Query: 186 FMALINAYTTCGEFEKARQVV------------------LDAEIPVKSRSEVKS------ 221
           + ALI       + ++A+ ++                  +DA        E  +      
Sbjct: 436 YGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKIL 495

Query: 222 ------------ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN 269
                       AL+  L   G   +AI  + ++++ G +   +A  AL++ L   G LN
Sbjct: 496 DSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLN 555

Query: 270 RLIQLLEEVHDPDYWMD 286
             +QL  E+      +D
Sbjct: 556 EAVQLFNEMVHKGMSLD 572



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/195 (20%), Positives = 82/195 (42%), Gaps = 3/195 (1%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y  LI   C++ K+  A  ++ +M +  L P+     +++ AC +S +      +   I 
Sbjct: 436 YGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKIL 495

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
               +PN  T+ ++I    K    D A S  + ++++ L P    Y A++ G  +   + 
Sbjct: 496 DSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLN 555

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKYVFMALI 190
            A+ +  EM    +  D   ++ L+       N  D      ++  +G Q+  + +   I
Sbjct: 556 EAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFI 615

Query: 191 NAYTTCGEFEKARQV 205
           + +       +AR+V
Sbjct: 616 SGFCNLNMMPEAREV 630


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 128/280 (45%), Gaps = 12/280 (4%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTET----INSILHACEESYEFNL 64
           P+S +Y  LI   C+  +V  ALD++E+M++  + P+  T    I ++     E     L
Sbjct: 266 PNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIEL 325

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
           V R+    C    +PN +T+ ++IS   ++   + A  L   + +  L+P    YNA++ 
Sbjct: 326 VARMKKRGC----RPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALIN 381

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQI 181
                     AL +   ME      ++QT++ +I       DI K    +E++   G   
Sbjct: 382 ELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLP 441

Query: 182 TKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
           T   +  LIN Y T G    A +++ L  E   +      + LVS  +  G+   A   +
Sbjct: 442 TVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYF 501

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           +E+ E G N  P +  ALI+  + +G+++  + LL+ + +
Sbjct: 502 QEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEE 541



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 90/456 (19%), Positives = 182/456 (39%), Gaps = 59/456 (12%)

Query: 20  YSCDLLKVHVA-LDVVE-------QMVQGELVPSTETINSILHACEESYEFNLVRRIYPM 71
           YSC+ L + +A  ++VE       QM+   + PS  T N++++   +  +      I   
Sbjct: 164 YSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQ 223

Query: 72  ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131
           I  ++L P+  T+ S+I  + + ++ D A+ + D + +    P +  Y+ ++ G   +  
Sbjct: 224 IFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGR 283

Query: 132 VQGALMVLKEMEQANV-----------------------------------KPDSQTFSY 156
           V  AL +L+EM +  +                                   +P+ QT++ 
Sbjct: 284 VDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTA 343

Query: 157 LIHNCS---NEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPV 213
           LI   S     E  I  Y ++   G       + ALIN     G F  A ++    E   
Sbjct: 344 LISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHG 403

Query: 214 K-SRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN--- 269
             + ++  + ++  L   G    A++++E++ + G          LI    ++G +N   
Sbjct: 404 SLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAA 463

Query: 270 RLIQLLEEVH-DPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSE 328
           RL+ L++E   +PD W      L+    ++ +L SA+   +++ +   +          +
Sbjct: 464 RLLDLMKENGCEPDEWTYN--ELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALID 521

Query: 329 IFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYE 388
                  +    V I L LL+ + +E+G  P+ +  + ++           A  I  +  
Sbjct: 522 -----GHSKDGKVDIALSLLKRM-EEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMV 575

Query: 389 NAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424
             GL  NV++Y  +      +G  + A K+   M K
Sbjct: 576 EQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEK 611



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 124/287 (43%), Gaps = 18/287 (6%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYE----FNL 64
           P   +Y +L++      K+  A    ++MV+  L P+  +  +++    +  +     +L
Sbjct: 476 PDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSL 535

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
           ++R+  M C+    PN E++ ++I+   K   F  A  + D + E  L+P    Y  ++ 
Sbjct: 536 LKRMEEMGCN----PNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLID 591

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKY 184
           G  R    Q A  +  +ME+    P+  T+S LI+    +E      E++   G + T  
Sbjct: 592 GLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLC-QEGKADEAERMSEIGCEPTLD 650

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRS-----EVKSALVSALASHGRTSDAIIV 239
            +  L++     G F +A Q+V D    +K R      E+  +L+ A   +     A+ +
Sbjct: 651 TYSTLVSGLCRKGRFYEAEQLVKD----MKERGFCPDREIYYSLLIAHCKNLEVDHALKI 706

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
           +  I+  G  L      ALI  L   G++     L + + + ++  D
Sbjct: 707 FHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNAD 753



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/284 (20%), Positives = 123/284 (43%), Gaps = 14/284 (4%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           ++ +Y ++I   C    +  A+ + E+M++   +P+  T N++++        N   R+ 
Sbjct: 407 NTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLL 466

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
            ++  +  +P+  T+  ++S   K    +SA     ++ E  L P    Y A++ G+ + 
Sbjct: 467 DLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKD 526

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQITKYVF 186
             V  AL +LK ME+    P+ ++++ +I+  S E    +  K  +++   G       +
Sbjct: 527 GKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITY 586

Query: 187 MALINAYTTCGEFEKARQVVLDAE----IPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             LI+     G  + A ++  D E    +P        S+L+  L   G+  +A    E 
Sbjct: 587 TTLIDGLCRNGRTQFAFKIFHDMEKRKCLP---NLYTYSSLIYGLCQEGKADEA----ER 639

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
           + E GC         L+  L  +G      QL++++ +  +  D
Sbjct: 640 MSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPD 683



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/284 (19%), Positives = 126/284 (44%), Gaps = 14/284 (4%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  SY  LI       KV +AL ++++M +    P+ E+ N++++   +   F+   
Sbjct: 509 LNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAE 568

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +I   +    L PN  T+ ++I    +      A+ +  D+++   +P    Y++++ G 
Sbjct: 569 KICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGL 628

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE------QLKSAGGQ 180
            ++     A    + M +   +P   T+S L+     +    ++YE       +K  G  
Sbjct: 629 CQEGKADEA----ERMSEIGCEPTLDTYSTLVSGLCRKG---RFYEAEQLVKDMKERGFC 681

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIV 239
             + ++ +L+ A+    E + A ++    E    +    +  AL+ AL   G+  +A  +
Sbjct: 682 PDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQAL 741

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY 283
           ++ + E   N +      L++ L  EGEL+  ++LL  +   ++
Sbjct: 742 FDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNF 785


>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 90/406 (22%), Positives = 175/406 (43%), Gaps = 18/406 (4%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHH-NLKPNSETFR 85
           V+ AL +  Q+   +  P++ T NS++    +      V  +Y  +C+  +  P++ T+ 
Sbjct: 175 VNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYS 234

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           ++I+   K+   DSA SL D++KE  L PTA +Y  I+  YF+   V+ AL +++EM++ 
Sbjct: 235 ALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEK 294

Query: 146 NVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
                  T++ LI         E+    +  +   G +    +   LIN     G    A
Sbjct: 295 GCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADA 354

Query: 203 RQVVLDAE-IPVKSRSEVKSALVSAL-ASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE 260
            ++  + E +         + ++ AL  S  R S+A + YE++KE G          LI+
Sbjct: 355 IKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILID 414

Query: 261 HLNSEGELNRLIQLLEEVHDPDY--WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDD 318
                  + + + LLEE+ +  +       C LI    + K+  +A +L ++L++     
Sbjct: 415 GFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCG-- 472

Query: 319 EMAMEYHFSEIFCQIAT--TDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARD 376
                Y  + ++  +         +   +DL   +K +LG  P     + L+   V    
Sbjct: 473 -----YSSARVYAVMIKHLGKCGRLSEAVDLFNEMK-KLGCNPDVYAYNALMSGMVRVGM 526

Query: 377 LKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
              AH + +  E  G   ++ S+  +   F  +G  K A ++ ++M
Sbjct: 527 TDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRM 572



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/203 (19%), Positives = 91/203 (44%), Gaps = 3/203 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + PSS +Y  LI   C   +V  AL ++E+M +    P      S+++A  ++  +    
Sbjct: 402 VVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAAN 461

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +  +    ++  +  MI    K      A  L +++K++   P    YNA+M+G 
Sbjct: 462 ELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGM 521

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
            R      A  +L+ ME+    PD  + + +++        +  I+ + ++K++  +   
Sbjct: 522 VRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDV 581

Query: 184 YVFMALINAYTTCGEFEKARQVV 206
             +  ++   +  G FE+A +++
Sbjct: 582 VSYNTVLGCLSRAGMFEEAAKLM 604


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 92/200 (46%), Gaps = 4/200 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  L+   C   ++  A+ VV  M      P+  T N+++ A   + E +   
Sbjct: 148 VAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAE 207

Query: 67  RIYPMICHH-NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           R+  ++    N KPN  TF SM++   K    + A  + D++    L P    YN +++G
Sbjct: 208 RVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSG 267

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQIT 182
           Y +   +  +L V  EM Q  + PD  TF+ LIH      N E  +    Q++  G ++ 
Sbjct: 268 YCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMN 327

Query: 183 KYVFMALINAYTTCGEFEKA 202
           +  F ALI+ +   G  + A
Sbjct: 328 EVTFTALIDGFCKKGFLDDA 347



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 78/365 (21%), Positives = 146/365 (40%), Gaps = 64/365 (17%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   SY  L++  C +  +H +L V  +M Q  LVP   T  S++HA  ++       
Sbjct: 254 LAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAV 313

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +    L+ N  TF ++I    K    D A   ++++++  + P+   YNA++ GY
Sbjct: 314 ALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGY 373

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-------------------------- 160
            +   +  A  +++EME   VKPD  T+S +I                            
Sbjct: 374 CKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDA 433

Query: 161 ----------CSNEE--DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA----RQ 204
                     C  +   D  + +E +   G Q  ++ +  LI+ +   G  EKA     +
Sbjct: 434 ITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDE 493

Query: 205 VVLDAEIPVKSRSEVKSALVSALASHGRTSDA---------------IIVYEEIKEAGCN 249
           ++    +P        S L++ L+   RT +A                I Y+ +      
Sbjct: 494 MIRKGVLP---DVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSK 550

Query: 250 LEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL---HCVRFKQLSSATD 306
            E ++V+AL++    +G +    ++ + + D ++ +DG    IL   HC R   +  A  
Sbjct: 551 AEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHC-RGGNVRKALS 609

Query: 307 LLKQL 311
             KQ+
Sbjct: 610 FHKQM 614



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/424 (18%), Positives = 165/424 (38%), Gaps = 45/424 (10%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           PS    N++L A  ++      RR    +  H + PN  T+  ++         + A  +
Sbjct: 116 PSVPAYNAVLLALSDA-SLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGV 174

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM-EQANVKPDSQTFSYLIHN-- 160
           + D++     P A  YN ++A + R  ++ GA  V+  M E+ N KP+  TF+ +++   
Sbjct: 175 VGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLC 234

Query: 161 -CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEV 219
                E   K ++++   G       +  L++ Y   G   ++  V  +    +  R  V
Sbjct: 235 KAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSE----MTQRGLV 290

Query: 220 K-----SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQL 274
                 ++L+ A    G    A+ +  +++E G  +      ALI+    +G L+  +  
Sbjct: 291 PDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLA 350

Query: 275 LEEVHDPDYWMDGCC--RLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQ 332
           +EE+          C   LI    +  ++  A +L+++++ K    ++         +C+
Sbjct: 351 VEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCK 410

Query: 333 IATTDP--------------PDVQIGLDLLQFIKDE---------------LGLPPSRKC 363
           +   D               PD      L++ + +E               LG+ P    
Sbjct: 411 VGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFT 470

Query: 364 LDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMP 423
              L+       ++++A  +  E    G+  +V++Y  +      S   K A +LL K+ 
Sbjct: 471 YTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLY 530

Query: 424 KDDP 427
            +DP
Sbjct: 531 HEDP 534



 Score = 42.4 bits (98), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 79/182 (43%), Gaps = 17/182 (9%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L + P   +Y  LI   C    V  AL + ++M++  ++P   T + +++   +S    
Sbjct: 461 QLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTK 520

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTA------- 116
              R+   + H +  P++  + +++ L     +F S  +LL       LM  A       
Sbjct: 521 EAHRLLFKLYHEDPVPDNIKYDALM-LCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSM 579

Query: 117 ---------SMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI 167
                    S+Y+ ++ G+ R  +V+ AL   K+M ++   P+S +   L+     E  +
Sbjct: 580 LDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMV 639

Query: 168 IK 169
           ++
Sbjct: 640 VE 641


>gi|414885390|tpg|DAA61404.1| TPA: hypothetical protein ZEAMMB73_280584 [Zea mays]
          Length = 645

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 135/310 (43%), Gaps = 19/310 (6%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +I P+  +Y  +I   C+   +  A  + + M +  + P+  T N ++    +  + N  
Sbjct: 216 QIDPNVVTYTTMICALCEEGCIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSA 275

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +Y  +    L PN+  F ++I    K K F  A  +  ++    + PT  +YN++M G
Sbjct: 276 VVLYQELLKSGLNPNAVIFTTLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDG 335

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEEDII--KYYEQLKSAGGQIT 182
            FR  + Q AL + +EM +  + PD  T S ++   C   +  +  ++ + ++  G  + 
Sbjct: 336 AFRSGNAQEALALYQEMTRLGLCPDEFTCSIVVRGLCDGGQMHVADRFLQGVQEDGVNLN 395

Query: 183 KYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
              + ALI+ Y   G  E+A        E+ ++      S+L+   +  G+   A+ +Y 
Sbjct: 396 AAAYNALIDEYCRIGNLEEALATCTRMTEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIYT 455

Query: 242 EIKEAGCNLEPRAV--IALIEHLNSEGELNRLIQL----LEEVHDPD-----YWMDGCCR 290
           E+   G  +EP  V   ALI      G ++   +L    +E    P+       +DG CR
Sbjct: 456 EMVAKG--IEPNVVTYTALIHGHAKNGGIDAAFRLHKEMIENGISPNAITVSVLVDGLCR 513

Query: 291 --LILHCVRF 298
              +   VRF
Sbjct: 514 ENRVQEAVRF 523



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 112/243 (46%), Gaps = 4/243 (1%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A ++ ++M++  LVPS  T N++++AC         + ++  +    + PN  T+ +MI 
Sbjct: 170 AWELFDEMLRRGLVPSVVTYNTLINACRFQGTVAKAQEVWDQMVAQQIDPNVVTYTTMIC 229

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              +      A  L D +KE  + P    YN +M+G+ ++ DV  A+++ +E+ ++ + P
Sbjct: 230 ALCEEGCIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSGLNP 289

Query: 150 DSQTFSYLIHN-CSNEE--DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           ++  F+ LI   C  +   +    + ++   G   T  V+ +L++     G  ++A  + 
Sbjct: 290 NAVIFTTLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALALY 349

Query: 207 LD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
            +   + +       S +V  L   G+   A    + ++E G NL   A  ALI+     
Sbjct: 350 QEMTRLGLCPDEFTCSIVVRGLCDGGQMHVADRFLQGVQEDGVNLNAAAYNALIDEYCRI 409

Query: 266 GEL 268
           G L
Sbjct: 410 GNL 412



 Score = 46.2 bits (108), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 29/132 (21%), Positives = 63/132 (47%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           ++A+Y  LI   C +  +  AL    +M +  + P+  + +S++    +  +  +   IY
Sbjct: 395 NAAAYNALIDEYCRIGNLEEALATCTRMTEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIY 454

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
             +    ++PN  T+ ++I  + K    D+A+ L  ++ E  + P A   + ++ G  R+
Sbjct: 455 TEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRLHKEMIENGISPNAITVSVLVDGLCRE 514

Query: 130 KDVQGALMVLKE 141
             VQ A+  + E
Sbjct: 515 NRVQEAVRFVME 526



 Score = 42.0 bits (97), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 34/175 (19%), Positives = 74/175 (42%), Gaps = 19/175 (10%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           ++ I P+  SY  LI       K+ +A+ +  +MV   + P+  T  +++H   ++   +
Sbjct: 424 EVGIEPNVVSYSSLIDGHSKRGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGID 483

Query: 64  LVRRIYPMICHHNLKPNSETFRSMIS------------------LNVKIKDFDSAYSLLD 105
              R++  +  + + PN+ T   ++                     +K  D  S +S   
Sbjct: 484 AAFRLHKEMIENGISPNAITVSVLVDGLCRENRVQEAVRFVMEYSGLKCSDIHSVFSNFT 543

Query: 106 DLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160
            ++E  L+P + +Y  ++ G +       A  +   M ++ + PDS T++ LI  
Sbjct: 544 -IEEECLIPNSVIYMTLIYGLYLDGQHCEAGKLFSYMRKSGMIPDSFTYTLLIRG 597


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 91/432 (21%), Positives = 182/432 (42%), Gaps = 29/432 (6%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           L   P+S ++  LI   C    +  AL+++++M +  LVPS  +  ++++      + +L
Sbjct: 109 LGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSL 168

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
             ++   +    LKPN   + ++I         + A  LLD +    + P    YNAI++
Sbjct: 169 ANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIIS 228

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQI 181
              +   ++ A   L E++   +KPD+ TF   I   S    +    KY++++   G   
Sbjct: 229 CLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMP 288

Query: 182 TKYVFMALINAYTTCGEFEKARQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
              ++  LIN +   G   +A  +   L A + V    +  SA +  L  +GR  +A+ V
Sbjct: 289 NNPLYTVLINGHFKAGNLMEALSIFRHLHA-LGVLPDVQTCSAFIHGLLKNGRVQEALKV 347

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDYWM-----DGCCR 290
           + E+KE G   +     +LI     +GE+ +  +L +E+      P+ ++     DG C 
Sbjct: 348 FSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLC- 406

Query: 291 LILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQF 350
                 +   +  A  L   + +K  + +        + +C+       +V     L   
Sbjct: 407 ------KSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCK-----SENVAEAFSLFHE 455

Query: 351 IKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASG 410
           +  + G+ P     + L+  C    D+++A  +++E    G     LS+  +   +  S 
Sbjct: 456 MPSK-GVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFA-TTLSFNTLIDGYCKSC 513

Query: 411 NRKSASKLLSKM 422
             + AS+L  +M
Sbjct: 514 KIQEASQLFQEM 525



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 87/401 (21%), Positives = 171/401 (42%), Gaps = 25/401 (6%)

Query: 48  TINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL 107
           T N ++H   +  +      I   +     KPNS TF  +I    +  +   A  LLD++
Sbjct: 82  TYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEM 141

Query: 108 KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE--- 164
           ++ NL+P+A  Y A++ G    KD+  A  +L++M  + +KP+   +S LI   ++E   
Sbjct: 142 EKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRI 201

Query: 165 EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSAL 223
           E+  +  + +  +G     + + A+I+  +  G+ E+A   +L+ +   +K  +    A 
Sbjct: 202 EEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAF 261

Query: 224 VSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD--- 280
           +   +  G+ ++A   ++E+ + G          LI      G L   + +   +H    
Sbjct: 262 ILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGV 321

Query: 281 -PDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPP 339
            PD  +  C   I   ++  ++  A  +  +LK+K    ++         FC+       
Sbjct: 322 LPD--VQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQG----- 374

Query: 340 DVQIGLDLLQFIKDEL---GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNV 396
           +V+   +L     DE+   G+ P+    + L+     + D++RA  ++      GL  + 
Sbjct: 375 EVEKAFEL----HDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDS 430

Query: 397 LSYLWMYKAFLASGNRKSASKLLSKMPKDD--PHVRFVIQA 435
           ++Y  M   +  S N   A  L  +MP     PH  FV  A
Sbjct: 431 VTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPH-SFVYNA 470



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 112/248 (45%), Gaps = 13/248 (5%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           +V  AL V  ++ +  LVP   T +S++    +  E      ++  +C   + PN   + 
Sbjct: 340 RVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYN 399

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           +++    K  D   A  L D + E  L P +  Y+ ++ GY + ++V  A  +  EM   
Sbjct: 400 ALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSK 459

Query: 146 NVKPDSQTFSYLIHNCSNEEDIIK----YYEQLKSAGGQITKYVFMALINAYTTCGEFEK 201
            V+P S  ++ L+H C  E D+ K    + E L+   G  T   F  LI+ Y    + ++
Sbjct: 460 GVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQK--GFATTLSFNTLIDGYCKSCKIQE 517

Query: 202 ARQVVLDAEIPVKSRSEVKSALVSALASH---GRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
           A Q  L  E+  K          + +  H   G+  +A ++++E++E   NL    V AL
Sbjct: 518 ASQ--LFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQER--NLIVDTVFAL 573

Query: 259 IEHLNSEG 266
            E + ++G
Sbjct: 574 FEKMVAKG 581



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 120/293 (40%), Gaps = 45/293 (15%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  + PS+ SY  +I   C    + +A  ++E+M    L P+    ++++          
Sbjct: 143 KRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIE 202

Query: 64  LVRRIY----------PMICHH-------------------------NLKPNSETFRSMI 88
             RR+            + C++                          LKP++ TF + I
Sbjct: 203 EARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFI 262

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
               K      A    D++ +  LMP   +Y  ++ G+F+  ++  AL + + +    V 
Sbjct: 263 LGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVL 322

Query: 149 PDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           PD QT S  IH        ++ +K + +LK  G     + + +LI+ +   GE EKA + 
Sbjct: 323 PDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFE- 381

Query: 206 VLDAEIPVKSRSE---VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255
            L  E+ +K  +    + +ALV  L   G    A  +++ + E G  LEP +V
Sbjct: 382 -LHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKG--LEPDSV 431



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 89/433 (20%), Positives = 181/433 (41%), Gaps = 30/433 (6%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P++ +Y  +    C   +++ A    E+M +  L P     ++++       + + V 
Sbjct: 6   LVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVL 65

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           RI  ++    +  N  T+  +I    K    + A  +L  +  +   P +  +  ++ GY
Sbjct: 66  RIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGY 125

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITK 183
            R+ ++  AL +L EME+ N+ P + ++  +I+   + +D+    K  E++  +G +   
Sbjct: 126 CREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNV 185

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEV--KSALVSALASHGRTSDAIIVYE 241
            V+  LI  Y + G  E+AR+ +LD         ++   +A++S L+  G+  +A     
Sbjct: 186 VVYSTLIMGYASEGRIEEARR-LLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLL 244

Query: 242 EIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFK 299
           EI+  G  L+P AV   A I   +  G++    +  +E+ D     +     +L    FK
Sbjct: 245 EIQGRG--LKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFK 302

Query: 300 QLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDP--------PDVQIGLDLLQFI 351
               A +L++ L        +    H   +   + T             VQ  L +   +
Sbjct: 303 ----AGNLMEAL-------SIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSEL 351

Query: 352 KDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGN 411
           K++ GL P       L+       ++++A  +  E    G+  N+  Y  +      SG+
Sbjct: 352 KEK-GLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGD 410

Query: 412 RKSASKLLSKMPK 424
            + A KL   MP+
Sbjct: 411 IQRARKLFDGMPE 423



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 81/214 (37%), Gaps = 47/214 (21%)

Query: 107 LKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED 166
           + E  L+P    Y  I AG  R K +  A +  +EM++  +KPD    S LI     E D
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 167 IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSA 226
           I                              E  + + V++   IP+   +   + L+  
Sbjct: 61  I-----------------------------DEVLRIKDVMVSCGIPINLIT--YNVLIHG 89

Query: 227 LASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY--- 283
           L   G+   A  + + +   GC    R    LIE    E  + R ++LL+E+   +    
Sbjct: 90  LCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPS 149

Query: 284 ------WMDGCCRLILHCVRFKQLSSATDLLKQL 311
                  ++G C    HC   K LS A  LL+++
Sbjct: 150 AVSYGAMINGLC----HC---KDLSLANKLLEKM 176


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 108/225 (48%), Gaps = 9/225 (4%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           +V VAL+++E M Q E+ P+  T  SIL  C         ++++  I             
Sbjct: 229 QVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVN 288

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           S+I++  K    + A  L  DL   +++     + A++ GY +      A+ + + M+Q 
Sbjct: 289 SLITMYCKCGGLEEARKLFSDLPHRDVV----TWTAMVTGYAQLGFHDEAINLFRRMQQQ 344

Query: 146 NVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
            +KPD  TF+ ++ +CS+    ++  + ++QL  AG  +  Y+  AL++ Y  CG  + A
Sbjct: 345 GIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDA 404

Query: 203 RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
             V    ++  ++     + +    A HGR  +A+  ++++K+ G
Sbjct: 405 SLVF--NQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQG 447



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 100/222 (45%), Gaps = 12/222 (5%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A    E M      P   T  S+L+A        L ++++  I    L+       S++ 
Sbjct: 132 AFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVG 191

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K  D   A  + D L E N++     +  ++AGY ++  V  AL +L+ M+QA V P
Sbjct: 192 MYAKCGDISKARVIFDRLPEKNVV----TWTLLIAGYAQQGQVDVALELLETMQQAEVAP 247

Query: 150 DSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           +  TF+ ++  C+     E   K +  +  +G     +V  +LI  Y  CG  E+AR++ 
Sbjct: 248 NKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLF 307

Query: 207 LDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAG 247
            D    +  R  V  +A+V+  A  G   +AI ++  +++ G
Sbjct: 308 SD----LPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQG 345



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/286 (19%), Positives = 119/286 (41%), Gaps = 55/286 (19%)

Query: 9   PSSASYKKLITYS--------CDLLKVHVALDVVEQMV-QGELVPSTETINSILHACEES 59
           P +A ++K+ T +        C   ++  AL ++  M+ QG  V S +    +L  C   
Sbjct: 2   PGNAGFRKVETLANSRDVSVLCKTGRLKEALGIMNTMILQGTRVYS-DVFRGLLQECARL 60

Query: 60  YEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMY 119
                 R ++  I    ++PN     +++S+  K      A  + D +++ N++   +M 
Sbjct: 61  RSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMI 120

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGG 179
            A +AG                                    +   +  K YE +K AG 
Sbjct: 121 EAFVAG------------------------------------NKNLEAFKCYETMKLAGC 144

Query: 180 QITKYVFMALINAYTTCGEFEKARQV---VLDAEIPVKSRSEVKSALVSALASHGRTSDA 236
           +  K  F++L+NA+T     +  ++V   +++A + ++ R  V ++LV   A  G  S A
Sbjct: 145 KPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPR--VGTSLVGMYAKCGDISKA 202

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPD 282
            ++++ + E   N+    +  LI     +G+++  ++LLE +   +
Sbjct: 203 RVIFDRLPEK--NVVTWTL--LIAGYAQQGQVDVALELLETMQQAE 244



 Score = 39.3 bits (90), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 41/199 (20%), Positives = 84/199 (42%), Gaps = 26/199 (13%)

Query: 17  LITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHN 76
           LIT  C    +  A  +   +   ++V  T  +             NL RR+        
Sbjct: 290 LITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQ----QQG 345

Query: 77  LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN-------AIMAGYFRK 129
           +KP+  TF S+++         S+ + L + K ++     + YN       A+++ Y + 
Sbjct: 346 IKPDKMTFTSVLTSC-------SSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKC 398

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE----EDIIKYYEQLKSAGGQITKYV 185
             +  A +V  +M + NV      ++ +I  C  +     + ++Y++Q+K  G +  K  
Sbjct: 399 GSMDDASLVFNQMSERNVV----AWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVT 454

Query: 186 FMALINAYTTCGEFEKARQ 204
           F ++++A T  G  E+ R+
Sbjct: 455 FTSVLSACTHVGLVEEGRK 473


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 151/341 (44%), Gaps = 36/341 (10%)

Query: 1   MHAKL---EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACE 57
           +HA++    ++PS  +Y  LI   C    ++ A++  +QM    L P+  T  +++    
Sbjct: 137 IHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFS 196

Query: 58  ESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTAS 117
                N   RI   +      P+  T+ + I  +  ++  + A  ++ ++ E  L P   
Sbjct: 197 RQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVV 256

Query: 118 MYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQL 174
            Y+ I++G+ RK ++  A  + +EM +  V PD+ T+S LI        + +     +++
Sbjct: 257 SYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEM 316

Query: 175 KSAGGQITKYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASH 230
              G    ++ +  LINAY   G+  KA     +++    +P    +   S L++ L   
Sbjct: 317 LDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLP---DAVTYSVLINGLNKQ 373

Query: 231 GRTSDAI---------------IVYEEIKEAGCNLEPRAVIALIEHLNSEG---ELNRLI 272
            RT +A                + Y+ + E   N+E ++V+ALI+    +G   E +R+ 
Sbjct: 374 ARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVF 433

Query: 273 Q-LLEEVHDPDYWMDGCCRLILHC-VRFKQLSSATDLLKQL 311
           + ++E  H P    +    +I+H   R   L  A +L K++
Sbjct: 434 ESMVERNHKPG---EAVYNVIIHGHCRGGNLPKAFNLYKEM 471



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 126/277 (45%), Gaps = 6/277 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           + P+  SY  +I   C    +  A +++E+M      P   T N++L+  C+E   F+  
Sbjct: 76  MQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEG-NFHQA 134

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             I+  +  + + P+  T+ ++I+   K ++ + A    D ++   L P    Y  ++ G
Sbjct: 135 LVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDG 194

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQIT 182
           + R+  +  A  +L EM ++   P   T++  IH  C  E  E+ +   +++   G    
Sbjct: 195 FSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPD 254

Query: 183 KYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
              +  +I+ +   GE ++A Q+  +  E  V   +   S+L+  L    R ++A  + +
Sbjct: 255 VVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQ 314

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           E+ + G   +      LI     EG+LN+ + L +E+
Sbjct: 315 EMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEM 351



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 82/424 (19%), Positives = 163/424 (38%), Gaps = 63/424 (14%)

Query: 37  MVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKD 96
           M++  + P+  T N ++       E       +  +  +   PN  T+ ++I    K+  
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60

Query: 97  FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSY 156
            D A+ LL  +    + P    YN I+ G  R+  ++ A  +L+EM      PD  T++ 
Sbjct: 61  IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYN- 119

Query: 157 LIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEI---PV 213
                                           L+N Y   G F +A  +V+ AE+    V
Sbjct: 120 -------------------------------TLLNGYCKEGNFHQA--LVIHAEMVRNGV 146

Query: 214 KSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQ 273
                  +AL++++      + A+  +++++  G     R    LI+  + +G LN   +
Sbjct: 147 SPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYR 206

Query: 274 LLEEVHDPDY---------WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEY 324
           +L E+ +  +         ++ G      HCV  +++  A  +++++ +K    ++    
Sbjct: 207 ILNEMTESGFSPSVVTYNAFIHG------HCV-LERMEEALGVVQEMVEKGLAPDVVSYS 259

Query: 325 HFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIW 384
                FC+    D    Q+  +++     E G+ P       L+      R L  A  + 
Sbjct: 260 TIISGFCRKGELDRA-FQMKQEMV-----EKGVSPDAVTYSSLIQGLCEMRRLTEACDLS 313

Query: 385 KEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQACKQTYTIPS 444
           +E  + GLP +  +Y  +  A+   G+   A  L  +M     H  F+  A   +  I  
Sbjct: 314 QEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEM----IHKGFLPDAVTYSVLING 369

Query: 445 LQKE 448
           L K+
Sbjct: 370 LNKQ 373



 Score = 40.4 bits (93), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 35/169 (20%), Positives = 71/169 (42%), Gaps = 15/169 (8%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           + + P   +Y  LI   C    ++ AL + ++M+    +P   T + +++   +      
Sbjct: 319 MGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTRE 378

Query: 65  VRRIYPMICHHNLKPNSETFRSMI---------SLNVKIKDF------DSAYSLLDDLKE 109
            +R+   + +    P+  T+ ++I         S+   IK F        A  + + + E
Sbjct: 379 AKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVE 438

Query: 110 MNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            N  P  ++YN I+ G+ R  ++  A  + KEM  +   P + T   LI
Sbjct: 439 RNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLI 487


>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Vitis vinifera]
          Length = 725

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 90/406 (22%), Positives = 175/406 (43%), Gaps = 18/406 (4%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHH-NLKPNSETFR 85
           V+ AL +  Q+   +  P++ T NS++    +      V  +Y  +C+  +  P++ T+ 
Sbjct: 175 VNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYS 234

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           ++I+   K+   DSA SL D++KE  L PTA +Y  I+  YF+   V+ AL +++EM++ 
Sbjct: 235 ALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEK 294

Query: 146 NVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
                  T++ LI         E+    +  +   G +    +   LIN     G    A
Sbjct: 295 GCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADA 354

Query: 203 RQVVLDAE-IPVKSRSEVKSALVSAL-ASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE 260
            ++  + E +         + ++ AL  S  R S+A + YE++KE G          LI+
Sbjct: 355 IKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILID 414

Query: 261 HLNSEGELNRLIQLLEEVHDPDY--WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDD 318
                  + + + LLEE+ +  +       C LI    + K+  +A +L ++L++     
Sbjct: 415 GFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCG-- 472

Query: 319 EMAMEYHFSEIFCQIAT--TDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARD 376
                Y  + ++  +         +   +DL   +K +LG  P     + L+   V    
Sbjct: 473 -----YSSARVYAVMIKHLGKCGRLSEAVDLFNEMK-KLGCNPDVYAYNALMSGMVRVGM 526

Query: 377 LKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
              AH + +  E  G   ++ S+  +   F  +G  K A ++ ++M
Sbjct: 527 TDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRM 572



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/203 (19%), Positives = 91/203 (44%), Gaps = 3/203 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + PSS +Y  LI   C   +V  AL ++E+M +    P      S+++A  ++  +    
Sbjct: 402 VVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAAN 461

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +  +    ++  +  MI    K      A  L +++K++   P    YNA+M+G 
Sbjct: 462 ELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGM 521

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
            R      A  +L+ ME+    PD  + + +++        +  I+ + ++K++  +   
Sbjct: 522 VRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDV 581

Query: 184 YVFMALINAYTTCGEFEKARQVV 206
             +  ++   +  G FE+A +++
Sbjct: 582 VSYNTVLGCLSRAGMFEEAAKLM 604


>gi|384247929|gb|EIE21414.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 448

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 129/278 (46%), Gaps = 8/278 (2%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  +I+      ++  AL++V +M    +V +  T +++++ C ++ E  L   +Y  +
Sbjct: 75  TYTTIISQCGSHQQLRKALELVAEMRGHGVVCNVHTYSALMNVCIKANELELALDVYGQL 134

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
                 PN  T+  +I ++ K+ ++  A  +LD L++    P    YN I++   R    
Sbjct: 135 LREGCTPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRSGQP 194

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMAL 189
           + AL V + M     +P + T++ LI         E+ ++ ++ +   G +     + +L
Sbjct: 195 EHALRVYERMLADGAQPTATTYTALISAYGKTGKIEEALRIFQDMVRRGCERNVITYSSL 254

Query: 190 INAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC 248
           I+A    G ++ A +++ +      K  +   +AL+SA A  G+   A  V+E++   GC
Sbjct: 255 ISACEKAGRWQLALELLDEMHRDNCKPNTVTFNALLSACAQGGQWKAAQDVFEQMPSCGC 314

Query: 249 NLEPRAVIALIEHLNSEGELNRLIQLLEEV----HDPD 282
             +  +   LI   +   +  R +Q L+E+    H PD
Sbjct: 315 KPDAVSYAILISAFDRGNQWCRALQALDEMQGQGHRPD 352



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 92/205 (44%), Gaps = 9/205 (4%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           TP+  +Y  LI     +     A+ V++ +      P   T N+IL AC  S +     R
Sbjct: 140 TPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRSGQPEHALR 199

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +Y  +     +P + T+ ++IS   K    + A  +  D+           Y+++++   
Sbjct: 200 VYERMLADGAQPTATTYTALISAYGKTGKIEEALRIFQDMVRRGCERNVITYSSLISACE 259

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN------EEDIIKYYEQLKSAGGQI 181
           +    Q AL +L EM + N KP++ TF+ L+  C+        +D+   +EQ+ S G + 
Sbjct: 260 KAGRWQLALELLDEMHRDNCKPNTVTFNALLSACAQGGQWKAAQDV---FEQMPSCGCKP 316

Query: 182 TKYVFMALINAYTTCGEFEKARQVV 206
               +  LI+A+    ++ +A Q +
Sbjct: 317 DAVSYAILISAFDRGNQWCRALQAL 341



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 71/150 (47%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P++ +Y  LI+      K+  AL + + MV+     +  T +S++ ACE++  + L   +
Sbjct: 211 PTATTYTALISAYGKTGKIEEALRIFQDMVRRGCERNVITYSSLISACEKAGRWQLALEL 270

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +   N KPN+ TF +++S   +   + +A  + + +      P A  Y  +++ + R
Sbjct: 271 LDEMHRDNCKPNTVTFNALLSACAQGGQWKAAQDVFEQMPSCGCKPDAVSYAILISAFDR 330

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
                 AL  L EM+    +PD   ++ +I
Sbjct: 331 GNQWCRALQALDEMQGQGHRPDVGVYNVVI 360



 Score = 45.4 bits (106), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 24/116 (20%), Positives = 57/116 (49%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  LI+      +  +AL+++++M +    P+T T N++L AC +  ++   + ++  +
Sbjct: 250 TYSSLISACEKAGRWQLALELLDEMHRDNCKPNTVTFNALLSACAQGGQWKAAQDVFEQM 309

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
                KP++ ++  +IS   +   +  A   LD+++     P   +YN ++    R
Sbjct: 310 PSCGCKPDAVSYAILISAFDRGNQWCRALQALDEMQGQGHRPDVGVYNVVIEALTR 365


>gi|156083863|ref|XP_001609415.1| pentatricopeptide repeat domain containing protein [Babesia bovis
            T2Bo]
 gi|154796666|gb|EDO05847.1| pentatricopeptide repeat domain containing protein [Babesia bovis]
          Length = 1067

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/280 (20%), Positives = 132/280 (47%), Gaps = 6/280 (2%)

Query: 9    PSSASYKKLITYSCDLLKVHVALDVVEQMVQ-GELVPSTETINSILHACEESYEFNLVRR 67
            P+  +Y  ++    +  ++  A+D++++M Q G + P+T    +++    ++ +      
Sbjct: 730  PNEVTYGIMLDAYVNNNRMEEAMDLLQEMKQKGNVKPNTIMYTTLIKGFGQNRQLQRAMS 789

Query: 68   IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
            IY M+    +  N+ T+ S+I    ++ D  +A +LL+++    + P    ++ I+ GY 
Sbjct: 790  IYDMMVSEGVMRNTVTYNSIIDACARVGDMKAAAALLEEMMMNQVEPDLITFSTIIKGYC 849

Query: 128  RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKY 184
             + ++  +  +L  M +  +KPD   ++ L+  C     +    K +EQ++  G   + +
Sbjct: 850  VQCNMDQSFQLLSIMYERGIKPDGILYNSLLEGCVKSGRLWLCEKLWEQMRIHGIAPSNF 909

Query: 185  VFMALINAYTTCGEFEKARQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
                LI  Y   G+ +K   +V  L AE      + V + L+SA  ++GR + A+ +Y  
Sbjct: 910  TLTILIKMYGRSGQLDKVFDLVERLPAEYGFTINAHVYTCLMSACITNGRYNTALDIYRC 969

Query: 243  IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPD 282
            +K+     + +    L++ +         + LL ++++ D
Sbjct: 970  VKDGSVKPDAKTYETLLQGVTRGNLFAEAVDLLRDMYNLD 1009


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 89/431 (20%), Positives = 180/431 (41%), Gaps = 27/431 (6%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           L   P+S ++  LI   C    +  AL+++++M +  LVPS  +  ++++      + +L
Sbjct: 308 LGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSL 367

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
             ++   +    LKPN   + ++I         + A  LLD +    + P    YNAI++
Sbjct: 368 ANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIIS 427

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQI 181
              +   ++ A   L E++   +KPD+ TF   I   S    +    KY++++   G   
Sbjct: 428 CLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMP 487

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVY 240
              ++  LIN +   G   +A  +      + V    +  SA +  L  +GR  +A+ V+
Sbjct: 488 NNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVF 547

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDYWM-----DGCCRL 291
            E+KE G   +     +LI     +GE+ +  +L +E+      P+ ++     DG C  
Sbjct: 548 SELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLC-- 605

Query: 292 ILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFI 351
                +   +  A  L   + +K  + +        + +C+       +V     L   +
Sbjct: 606 -----KSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCK-----SENVAEAFSLFHEM 655

Query: 352 KDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGN 411
             + G+ P     + L+  C    D+++A  +++E    G     LS+  +   +  S  
Sbjct: 656 PSK-GVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFA-TTLSFNTLIDGYCKSCK 713

Query: 412 RKSASKLLSKM 422
            + AS+L  +M
Sbjct: 714 IQEASQLFQEM 724



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 87/401 (21%), Positives = 171/401 (42%), Gaps = 25/401 (6%)

Query: 48  TINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL 107
           T N ++H   +  +      I   +     KPNS TF  +I    +  +   A  LLD++
Sbjct: 281 TYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEM 340

Query: 108 KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE--- 164
           ++ NL+P+A  Y A++ G    KD+  A  +L++M  + +KP+   +S LI   ++E   
Sbjct: 341 EKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRI 400

Query: 165 EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSAL 223
           E+  +  + +  +G     + + A+I+  +  G+ E+A   +L+ +   +K  +    A 
Sbjct: 401 EEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAF 460

Query: 224 VSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD--- 280
           +   +  G+ ++A   ++E+ + G          LI      G L   + +   +H    
Sbjct: 461 ILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGV 520

Query: 281 -PDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPP 339
            PD  +  C   I   ++  ++  A  +  +LK+K    ++         FC+       
Sbjct: 521 LPD--VQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQG----- 573

Query: 340 DVQIGLDLLQFIKDEL---GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNV 396
           +V+   +L     DE+   G+ P+    + L+     + D++RA  ++      GL  + 
Sbjct: 574 EVEKAFEL----HDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDS 629

Query: 397 LSYLWMYKAFLASGNRKSASKLLSKMPKDD--PHVRFVIQA 435
           ++Y  M   +  S N   A  L  +MP     PH  FV  A
Sbjct: 630 VTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPH-SFVYNA 669



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 116/260 (44%), Gaps = 11/260 (4%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           +V  AL V  ++ +  LVP   T +S++    +  E      ++  +C   + PN   + 
Sbjct: 539 RVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYN 598

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           +++    K  D   A  L D + E  L P +  Y+ ++ GY + ++V  A  +  EM   
Sbjct: 599 ALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSK 658

Query: 146 NVKPDSQTFSYLIHNCSNEEDIIK----YYEQLKSAGGQITKYVFMALINAYTTCGEFEK 201
            V+P S  ++ L+H C  E D+ K    + E L+   G  T   F  LI+ Y    + ++
Sbjct: 659 GVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQK--GFATTLSFNTLIDGYCKSCKIQE 716

Query: 202 ARQVVLDAEIPVKSRSEVKSALVSALASH---GRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
           A Q  L  E+  K          + +  H   G+  +A ++++E++E    ++     +L
Sbjct: 717 ASQ--LFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSL 774

Query: 259 IEHLNSEGELNRLIQLLEEV 278
           +   N  G+ + +  L E++
Sbjct: 775 MYGYNKLGQSSEVFALFEKM 794



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 120/293 (40%), Gaps = 45/293 (15%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  + PS+ SY  +I   C    + +A  ++E+M    L P+    ++++          
Sbjct: 342 KRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIE 401

Query: 64  LVRR---------IYPMICHHN--------------------------LKPNSETFRSMI 88
             RR         + P I  +N                          LKP++ TF + I
Sbjct: 402 EARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFI 461

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
               K      A    D++ +  LMP   +Y  ++ G+F+  ++  AL + + +    V 
Sbjct: 462 LGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVL 521

Query: 149 PDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           PD QT S  IH        ++ +K + +LK  G     + + +LI+ +   GE EKA + 
Sbjct: 522 PDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFE- 580

Query: 206 VLDAEIPVKSRSE---VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255
            L  E+ +K  +    + +ALV  L   G    A  +++ + E G  LEP +V
Sbjct: 581 -LHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKG--LEPDSV 630



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 89/433 (20%), Positives = 181/433 (41%), Gaps = 30/433 (6%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P++ +Y  +    C   +++ A    E+M +  L P     ++++       + + V 
Sbjct: 205 LVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVL 264

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           RI  ++    +  N  T+  +I    K    + A  +L  +  +   P +  +  ++ GY
Sbjct: 265 RIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGY 324

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITK 183
            R+ ++  AL +L EME+ N+ P + ++  +I+   + +D+    K  E++  +G +   
Sbjct: 325 CREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNV 384

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEV--KSALVSALASHGRTSDAIIVYE 241
            V+  LI  Y + G  E+AR+ +LD         ++   +A++S L+  G+  +A     
Sbjct: 385 VVYSTLIMGYASEGRIEEARR-LLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLL 443

Query: 242 EIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFK 299
           EI+  G  L+P AV   A I   +  G++    +  +E+ D     +     +L    FK
Sbjct: 444 EIQGRG--LKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFK 501

Query: 300 QLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDP--------PDVQIGLDLLQFI 351
               A +L++ L        +    H   +   + T             VQ  L +   +
Sbjct: 502 ----AGNLMEAL-------SIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSEL 550

Query: 352 KDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGN 411
           K++ GL P       L+       ++++A  +  E    G+  N+  Y  +      SG+
Sbjct: 551 KEK-GLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGD 609

Query: 412 RKSASKLLSKMPK 424
            + A KL   MP+
Sbjct: 610 IQRARKLFDGMPE 622



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 81/402 (20%), Positives = 156/402 (38%), Gaps = 26/402 (6%)

Query: 34  VEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVK 93
           +  M +  LVP+T T   I      +   N  +  +  +    LKP+     ++I   ++
Sbjct: 197 LRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMR 256

Query: 94  IKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQT 153
             D D    + D +    +      YN ++ G  +   ++ A  +LK M     KP+S+T
Sbjct: 257 EGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRT 316

Query: 154 FSYLIHNCSNEEDIIKYYEQLKSAGGQ---ITKYVFMALINAYTTCGEFEKARQVVLDAE 210
           F  LI     E ++ +  E L     +    +   + A+IN    C +   A +++    
Sbjct: 317 FCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMT 376

Query: 211 IP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN 269
              +K    V S L+   AS GR  +A  + + +  +G   +     A+I  L+  G++ 
Sbjct: 377 FSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKME 436

Query: 270 RLIQLLEEVHD----PDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDK--FKDDEM--- 320
                L E+      PD    G    IL   +  +++ A     ++ D     ++ +   
Sbjct: 437 EASTYLLEIQGRGLKPDAVTFGA--FILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTV 494

Query: 321 AMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRA 380
            +  HF             ++   L + + +     LP  + C  F+ G   N R ++ A
Sbjct: 495 LINGHFK----------AGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGR-VQEA 543

Query: 381 HLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
             ++ E +  GL  +V +Y  +   F   G  + A +L  +M
Sbjct: 544 LKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEM 585


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 86/393 (21%), Positives = 169/393 (43%), Gaps = 47/393 (11%)

Query: 36  QMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIK 95
           +M +  + P   + N++LH   +    +L R+ +  +    +K +  T+  MI    K  
Sbjct: 11  KMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEG 70

Query: 96  DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFS 155
           D + A SL   +KE    P    YN+++ G+ +   +   + + ++M+ A+  PD  T++
Sbjct: 71  DLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYN 130

Query: 156 YLIHNCSNEEDIIKYYE---QLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIP 212
            LI+     E + K +E   ++K+ G +     +   I+A+   G  ++A +  +D    
Sbjct: 131 ALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRV 190

Query: 213 VKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRL 271
             + +E   ++L+ A    G  ++A+ + EEI +AG  L      AL++ L  EG +   
Sbjct: 191 ALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEA 250

Query: 272 IQLLEEVHDPDYW--MDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEI 329
            ++   + +       +    L+   ++ K++  A D+LK++K+K               
Sbjct: 251 EEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEK--------------- 295

Query: 330 FCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYEN 389
            C                   IK +L L  +      L G C  +R L+ A L+  E + 
Sbjct: 296 -C-------------------IKPDLLLYGT-----ILWGLCNESR-LEEAKLLIGEIKE 329

Query: 390 AGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           +G+  N + Y  +  A+  SG    A  LL +M
Sbjct: 330 SGINTNAVIYTTLMDAYFKSGQATEALTLLEEM 362



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/279 (20%), Positives = 132/279 (47%), Gaps = 16/279 (5%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           ++ +TP+  +Y  LI  +C    +  AL +VE+++Q  +  +  T  ++L    E     
Sbjct: 189 RVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMK 248

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               ++  + +  + PN ET+ +++   +K K+ + A  +L ++KE  + P   +Y  I+
Sbjct: 249 EAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTIL 308

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK 183
            G   +  ++ A +++ E++++ +  ++  ++ L+           Y++  ++       
Sbjct: 309 WGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMD---------AYFKSGQATEALTLL 359

Query: 184 YVFMALINAYTTCGEFEKARQV---VLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
              + L++       FE A+++   +LD   +P K      +AL+     HG   +A+ +
Sbjct: 360 EEMLDLVDGLCKNNCFEVAKKLFDEMLDKGMMPDKI---AYTALIDGNMKHGNLQEALNL 416

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            + + E G  L+  A  ALI  L+  G++ +   LL+E+
Sbjct: 417 RDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEM 455



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 96/456 (21%), Positives = 196/456 (42%), Gaps = 50/456 (10%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CE-----ESY 60
            TP   +Y  LI     L  +   + + EQM   +  P   T N++++  C+     +++
Sbjct: 87  FTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAF 146

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           EF     ++ M  +  LKPN  T+ + I    K      A     D++ + L P    Y 
Sbjct: 147 EF-----LHEMKAN-GLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYT 200

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSA 177
           +++    +  ++  AL +++E+ QA +K +  T++ L+     E   ++  + +  + +A
Sbjct: 201 SLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNA 260

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDA 236
           G    +  + AL++ +    E E A+ ++ +  E  +K    +   ++  L +  R  +A
Sbjct: 261 GVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEA 320

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCV 296
            ++  EIKE+G N        L++     G+    + LLEE+ D    +DG C+      
Sbjct: 321 KLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLD---LVDGLCK------ 371

Query: 297 RFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQ---FIKD 353
                ++  ++ K+L D+  D  M  +        +IA T   D  +    LQ    ++D
Sbjct: 372 -----NNCFEVAKKLFDEMLDKGMMPD--------KIAYTALIDGNMKHGNLQEALNLRD 418

Query: 354 ---ELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASG 410
              E+G+         L+    ++  +++A  +  E    G+  + + Y+ + K + A G
Sbjct: 419 RMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALG 478

Query: 411 NRKSASKLLSKMPKDDPHVRFVIQACKQTYTIPSLQ 446
               A +L ++M K     R +I      + +PS+Q
Sbjct: 479 KVDEALELQNEMAK-----RGMITGLSD-HAVPSVQ 508


>gi|224109914|ref|XP_002333182.1| predicted protein [Populus trichocarpa]
 gi|222835036|gb|EEE73485.1| predicted protein [Populus trichocarpa]
          Length = 319

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/331 (20%), Positives = 147/331 (44%), Gaps = 30/331 (9%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P + ++  L+   C   K+  A  +V+ M++  + P+T T +S+++           R
Sbjct: 6   IMPDAVTFNILVDTLCKKGKISEAQGIVKTMIEKGVEPNTVTYSSLMNGYLLQNRVFEAR 65

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++  +      P+  ++  +I+   K +  D A  + D++    L+P  + YN ++ G+
Sbjct: 66  KVFNAMITRGCIPDVLSYNILINGCCKAQRIDEAKQIFDEMSFRGLIPNTATYNTLLGGF 125

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITK 183
           +++K     + + K+M      PD  T+S  +H  S +   +  ++ + ++++       
Sbjct: 126 WKQK-----IQLFKDMHAQGCSPDLVTYSIFLHGLSKQGYLDQALELFREMQNNYLNPDL 180

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKS-RSEVKS--ALVSALASHGRTSDAIIVY 240
            ++  LI+A    G+ E AR++ L  ++ VK    +V+S  +++S L   G   +A   +
Sbjct: 181 VIYNILIDAMCKSGKLEDARELFL--KLHVKGLLPDVRSWTSIISGLCREGLLDEAYKAF 238

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQ 300
            +++  GC  +  +   ++         +R  QL +E+ D  +  D   R +        
Sbjct: 239 RQMERDGCPPDCCSYNVIVRGFLQNNGASRAEQLFQEMFDRGFSADALTRTL-------- 290

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFC 331
              A DLL       KDD + ++    E  C
Sbjct: 291 ---AADLLS------KDDNLGLKRLLGESEC 312


>gi|299471045|emb|CBN78905.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 755

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 102/449 (22%), Positives = 187/449 (41%), Gaps = 29/449 (6%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           ++P+   Y   I       +  +A+ ++ +M   E+VP   + NS + AC    ++  V 
Sbjct: 176 VSPNVFCYNSAIEACGSGDQWEIAVSLLREMADREVVPDEISYNSAIKACGRGGQWERVI 235

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +    L P++ T+ S+I+   K   +  A S+L ++    L P    YN  +   
Sbjct: 236 GLLREMPSVGLTPDAITYNSVITGCGKEGQWKEALSVLTEMSAKGLTPETISYNMAIRAC 295

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITK 183
            R    + A+ VL++ME   V PD  ++   I  C      E  +   +++   G     
Sbjct: 296 GRSGRWKEAVEVLRQMESQGVTPDVISYDAAIKACGGGGQWETSVDLLDEMAGRGVAPNT 355

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALAS---HGRTSDAIIVY 240
             F + I A    G++EKA  V L  E+     +   ++  SA+A+    GR  +A+ + 
Sbjct: 356 IHFNSAIVACGKGGQWEKA--VELLREVTALGLTPDATSFNSAIAACTKSGRWKEALELL 413

Query: 241 EEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVH----DPDYWMDGCCRLILH 294
           +E+      L+P A+   + IE     G+    ++L  ++      P+         I  
Sbjct: 414 KEMPAK--RLKPDAISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNVISSNIA--IRA 469

Query: 295 CVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDE 354
           C    +     +LL+Q+  +     + + Y+ +   C          +  LDLL  +K E
Sbjct: 470 CGERGRWQEGLELLRQMPAQGLTPNV-ITYNSAIKTCGKGG----QWEKALDLLAKMK-E 523

Query: 355 LGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKS 414
           L + P     +  + AC      K A  + +E    GL  +V+SY     A+  +G  + 
Sbjct: 524 LAMTPDSITYNSAIAACSKRGRWKEAVALLREMPGQGLTPDVISYTAAIDAYGKNGQWER 583

Query: 415 ASKLLSKMPKDD--PHV---RFVIQACKQ 438
           A +LL +MP     P+V     VI+AC +
Sbjct: 584 AVELLRQMPTKGLTPNVITYNSVIKACGR 612



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 90/422 (21%), Positives = 173/422 (40%), Gaps = 12/422 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           +TP   SY   I       +   ++D++++M    + P+T   NS + AC +  ++    
Sbjct: 316 VTPDVISYDAAIKACGGGGQWETSVDLLDEMAGRGVAPNTIHFNSAIVACGKGGQWEKAV 375

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +    L P++ +F S I+   K   +  A  LL ++    L P A  YN+ +   
Sbjct: 376 ELLREVTALGLTPDATSFNSAIAACTKSGRWKEALELLKEMPAKRLKPDAISYNSAIEAC 435

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVF 186
            +    + AL + ++M    + P+  + +  I  C       +  E L+    Q      
Sbjct: 436 GKGGQWEMALELRRQMPTKGLTPNVISSNIAIRACGERGRWQEGLELLRQMPAQGLTPNV 495

Query: 187 MALINAYTTC---GEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           +   +A  TC   G++EKA  ++    E+ +   S   ++ ++A +  GR  +A+ +  E
Sbjct: 496 ITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSITYNSAIAACSKRGRWKEAVALLRE 555

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQ 300
           +   G   +  +  A I+     G+  R ++LL ++       +      +I  C R  +
Sbjct: 556 MPGQGLTPDVISYTAAIDAYGKNGQWERAVELLRQMPTKGLTPNVITYNSVIKACGRGGE 615

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS 360
              A DLLK+LK+     ++ M Y+ +   C          +  LDLL+ +  E GL P 
Sbjct: 616 WEKALDLLKELKETAVAPDL-MSYNLAISAC----GKRGRWEEALDLLREMPAE-GLTPD 669

Query: 361 RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420
                  + AC    + ++A  +       G+     SY    +A    G R+ A  L+ 
Sbjct: 670 VISYTSAIRACNAEGEWEKALGLLNLMGAHGVSPTATSYSLAIEACGKGGRREEAVCLVR 729

Query: 421 KM 422
           +M
Sbjct: 730 EM 731



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/310 (21%), Positives = 125/310 (40%), Gaps = 39/310 (12%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           L +TP + S+   I       +   AL+++++M    L P   + NS + AC +  ++ +
Sbjct: 384 LGLTPDATSFNSAIAACTKSGRWKEALELLKEMPAKRLKPDAISYNSAIEACGKGGQWEM 443

Query: 65  ---VRRIYPM--------------------------------ICHHNLKPNSETFRSMIS 89
              +RR  P                                 +    L PN  T+ S I 
Sbjct: 444 ALELRRQMPTKGLTPNVISSNIAIRACGERGRWQEGLELLRQMPAQGLTPNVITYNSAIK 503

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              K   ++ A  LL  +KE+ + P +  YN+ +A   ++   + A+ +L+EM    + P
Sbjct: 504 TCGKGGQWEKALDLLAKMKELAMTPDSITYNSAIAACSKRGRWKEAVALLREMPGQGLTP 563

Query: 150 DSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D  +++  I         E  ++   Q+ + G       + ++I A    GE+EKA  ++
Sbjct: 564 DVISYTAAIDAYGKNGQWERAVELLRQMPTKGLTPNVITYNSVIKACGRGGEWEKALDLL 623

Query: 207 LD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
            +  E  V       +  +SA    GR  +A+ +  E+   G   +  +  + I   N+E
Sbjct: 624 KELKETAVAPDLMSYNLAISACGKRGRWEEALDLLREMPAEGLTPDVISYTSAIRACNAE 683

Query: 266 GELNRLIQLL 275
           GE  + + LL
Sbjct: 684 GEWEKALGLL 693



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 86/414 (20%), Positives = 168/414 (40%), Gaps = 34/414 (8%)

Query: 26  KVHVALDVVEQMVQGELVPS---TETINSILHACEESYEFNLVRRIYPMICHHNLKPNSE 82
           K   AL ++++M +G +V +   T  I +     +      L+R I        + PN  
Sbjct: 125 KWREALGILDEMKEGGVVCAHSYTTAITTCGRQGQWEKALELLREIPE---QEGVSPNVF 181

Query: 83  TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM 142
            + S I        ++ A SLL ++ +  ++P    YN+ +    R    +  + +L+EM
Sbjct: 182 CYNSAIEACGSGDQWEIAVSLLREMADREVVPDEISYNSAIKACGRGGQWERVIGLLREM 241

Query: 143 EQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEF 199
               + PD+ T++ +I  C  E   ++ +    ++ + G       +   I A    G +
Sbjct: 242 PSVGLTPDAITYNSVITGCGKEGQWKEALSVLTEMSAKGLTPETISYNMAIRACGRSGRW 301

Query: 200 EKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
           ++A +V+   E    +   +   A + A    G+   ++ + +E+  AG  + P  +   
Sbjct: 302 KEAVEVLRQMESQGVTPDVISYDAAIKACGGGGQWETSVDLLDEM--AGRGVAPNTI--- 356

Query: 259 IEHLNSE-------GELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQLSSATDLLK 309
             H NS        G+  + ++LL EV       D       I  C +  +   A +LLK
Sbjct: 357 --HFNSAIVACGKGGQWEKAVELLREVTALGLTPDATSFNSAIAACTKSGRWKEALELLK 414

Query: 310 QLKDK-FKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLL 368
           ++  K  K D  A+ Y+ +   C          ++ L+L + +  + GL P+    +  +
Sbjct: 415 EMPAKRLKPD--AISYNSAIEACGKGG----QWEMALELRRQMPTK-GLTPNVISSNIAI 467

Query: 369 GACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
            AC      +    + ++    GL  NV++Y    K     G  + A  LL+KM
Sbjct: 468 RACGERGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKM 521



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 85/203 (41%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L +TP S +Y   I       +   A+ ++ +M    L P   +  + + A  ++ ++ 
Sbjct: 523 ELAMTPDSITYNSAIAACSKRGRWKEAVALLREMPGQGLTPDVISYTAAIDAYGKNGQWE 582

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               +   +    L PN  T+ S+I    +  +++ A  LL +LKE  + P    YN  +
Sbjct: 583 RAVELLRQMPTKGLTPNVITYNSVIKACGRGGEWEKALDLLKELKETAVAPDLMSYNLAI 642

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK 183
           +   ++   + AL +L+EM    + PD  +++  I  C+ E +  K    L   G     
Sbjct: 643 SACGKRGRWEEALDLLREMPAEGLTPDVISYTSAIRACNAEGEWEKALGLLNLMGAHGVS 702

Query: 184 YVFMALINAYTTCGEFEKARQVV 206
               +   A   CG+  +  + V
Sbjct: 703 PTATSYSLAIEACGKGGRREEAV 725


>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
 gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/294 (20%), Positives = 134/294 (45%), Gaps = 4/294 (1%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K    P    +  LI   C + K  +A  ++++M     VP   T NS++       + +
Sbjct: 103 KRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVGCVPDVVTCNSLMRGYCSQGKID 162

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
            VR+I+ ++    LKP+  ++   I+   K++  D A  L D++    ++P A  YN ++
Sbjct: 163 KVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLI 222

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-C--SNEEDIIKYYEQLKSAGGQ 180
               +    + A ++ ++M    + PD   +S L+   C   N ++++  +++++    +
Sbjct: 223 KALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVK 282

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIV 239
               V+  +IN      + + A++V+    +  +K      +ALV  L   G   +A+ +
Sbjct: 283 PDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRL 342

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL 293
           + +++E GC     +   L++      + + ++QL+ E+ D  ++ D   R  L
Sbjct: 343 FRKMEEDGCMPGSCSYNVLLQGCLQHNDTSTVVQLIHEMADRGFYADAVTRTFL 396



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 54/274 (19%), Positives = 111/274 (40%), Gaps = 13/274 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL    +M+     P     N +L +     ++  V  ++  +    +K N  T   +I+
Sbjct: 24  ALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLSILIN 83

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
               +   D  +S+     +    P   ++  ++ G  R    + A  +LKEM      P
Sbjct: 84  CFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVGCVP 143

Query: 150 DSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D  T + L+   CS    + + K +  + S G +   Y +   IN Y    + ++A ++ 
Sbjct: 144 DVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELF 203

Query: 207 LD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
            + +   V   +   + L+ AL    R  DA +++ ++   G + +  A   L++    +
Sbjct: 204 DEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQ 263

Query: 266 GELNRLIQLLEEVH----DPDY-----WMDGCCR 290
           G L+ ++ L +E+      PD       ++G CR
Sbjct: 264 GNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCR 297


>gi|298707411|emb|CBJ30040.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 564

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/322 (20%), Positives = 144/322 (44%), Gaps = 20/322 (6%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           A + ++P+  ++   +    +  +   AL +++QM +  + P+  T ++ + AC ++ ++
Sbjct: 139 AAVGLSPNVTTFSSAVAACGNAGQWERALGLLDQMAEEGVPPNEFTFSAAVSACGKAGQW 198

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
                I   +   N  PN +T+ + I    K  ++  A  LL +++E  + P    +N+ 
Sbjct: 199 RPALTILRRMRAANCPPNVQTYTAAIDACGKAGEWRLAQGLLAEMREKGVAPNVITFNSA 258

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGG 179
           ++        Q AL +L++M    V+P+  +++  +  C +     +    +EQ++S G 
Sbjct: 259 ISALGNGGQWQEALNLLRDMPSMGVQPNMWSYTAAVTACGDNNRWARALAVHEQMRSRGI 318

Query: 180 QITKYVFMALINAYTTCGEFEKARQVV---LDAEIPVKSRSEVKSALVSALASHGRTSDA 236
           +  +  F A I+A    G +E A  ++    D  IP   RS   S  +SA     +   A
Sbjct: 319 RGDEVSFTAAIDACAQGGAWEMALALLDEMRDEGIPPTVRS--FSTAISACGKGQQWGRA 376

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCR------ 290
           + +  E++E G +    +  A I+     G+    + LL+++        G  R      
Sbjct: 377 VALLREMEEVGVSPNEVSFNAAIDACGRAGQWRAALSLLDKMSSA-----GVPRGTITYN 431

Query: 291 -LILHCVRFKQLSSATDLLKQL 311
            +I  C + K+ + A  +L+++
Sbjct: 432 AVIAACGKGKEWARAVSVLREM 453



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 82/382 (21%), Positives = 154/382 (40%), Gaps = 39/382 (10%)

Query: 83  TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPT----ASMYNAIMAGYFRKKDV----QG 134
           T+  ++S   +   ++    LLD ++   + P      +  NA   G   ++ V    Q 
Sbjct: 71  TYSVLMSAVARSGRWEEVLVLLDVMRSEGVAPDHFAFGAAVNACAKGGQWERAVALLDQR 130

Query: 135 ALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALIN 191
           AL +L EM    + P+  TFS  +  C N    E  +   +Q+   G    ++ F A ++
Sbjct: 131 ALRLLGEMAAVGLSPNVTTFSSAVAACGNAGQWERALGLLDQMAEEGVPPNEFTFSAAVS 190

Query: 192 AYTTCGEFEKARQVVLD---AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC 248
           A    G++  A  ++     A  P     +  +A + A    G    A  +  E++E G 
Sbjct: 191 ACGKAGQWRPALTILRRMRAANCP--PNVQTYTAAIDACGKAGEWRLAQGLLAEMREKG- 247

Query: 249 NLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHD----PDYWMDGCCRLILHCVRFKQLS 302
            + P  +   + I  L + G+    + LL ++      P+ W       +  C    + +
Sbjct: 248 -VAPNVITFNSAISALGNGGQWQEALNLLRDMPSMGVQPNMW--SYTAAVTACGDNNRWA 304

Query: 303 SATDLLKQLKDK-FKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSR 361
            A  + +Q++ +  + DE++            A       ++ L LL  ++DE G+PP+ 
Sbjct: 305 RALAVHEQMRSRGIRGDEVSFTAAID------ACAQGGAWEMALALLDEMRDE-GIPPTV 357

Query: 362 KCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSK 421
           +     + AC   +   RA  + +E E  G+  N +S+     A   +G  ++A  LL K
Sbjct: 358 RSFSTAISACGKGQQWGRAVALLREMEEVGVSPNEVSFNAAIDACGRAGQWRAALSLLDK 417

Query: 422 M-----PKDDPHVRFVIQACKQ 438
           M     P+       VI AC +
Sbjct: 418 MSSAGVPRGTITYNAVIAACGK 439



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 111/260 (42%), Gaps = 14/260 (5%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL ++ +M    L P+  T +S + AC  + ++     +   +    + PN  TF + +S
Sbjct: 131 ALRLLGEMAAVGLSPNVTTFSSAVAACGNAGQWERALGLLDQMAEEGVPPNEFTFSAAVS 190

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              K   +  A ++L  ++  N  P    Y A +    +  + + A  +L EM +  V P
Sbjct: 191 ACGKAGQWRPALTILRRMRAANCPPNVQTYTAAIDACGKAGEWRLAQGLLAEMREKGVAP 250

Query: 150 DSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEK-ARQV 205
           +  TF+  I    N    ++ +     + S G Q   + + A   A T CG+  + AR +
Sbjct: 251 NVITFNSAISALGNGGQWQEALNLLRDMPSMGVQPNMWSYTA---AVTACGDNNRWARAL 307

Query: 206 VLDAEIPVKSRS----EVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE 260
            +  ++  +SR     EV  +A + A A  G    A+ + +E+++ G     R+    I 
Sbjct: 308 AVHEQM--RSRGIRGDEVSFTAAIDACAQGGAWEMALALLDEMRDEGIPPTVRSFSTAIS 365

Query: 261 HLNSEGELNRLIQLLEEVHD 280
                 +  R + LL E+ +
Sbjct: 366 ACGKGQQWGRAVALLREMEE 385



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 94/219 (42%), Gaps = 21/219 (9%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQM----VQGELVPSTETINSILHACEESY 60
           + + P+  SY   +T   D  +   AL V EQM    ++G+ V  T  I+    AC +  
Sbjct: 281 MGVQPNMWSYTAAVTACGDNNRWARALAVHEQMRSRGIRGDEVSFTAAID----ACAQGG 336

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
            + +   +   +    + P   +F + IS   K + +  A +LL +++E+ + P    +N
Sbjct: 337 AWEMALALLDEMRDEGIPPTVRSFSTAISACGKGQQWGRAVALLREMEEVGVSPNEVSFN 396

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKS--AG 178
           A +    R    + AL +L +M  A V   + T++ +I  C   ++  +    L+   AG
Sbjct: 397 AAIDACGRAGQWRAALSLLDKMSSAGVPRGTITYNAVIAACGKGKEWARAVSVLREMLAG 456

Query: 179 GQITK-----------YVFMALINAYTTCGEFEKARQVV 206
              T              + A I+A    GE+E+A  +V
Sbjct: 457 QAKTDGDMAPVPMADVVSYSAAIDACVRAGEWEEAISLV 495


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 92/437 (21%), Positives = 187/437 (42%), Gaps = 39/437 (8%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P + ++   I     L  V  AL V  +M++ ELVP   T N ++    ++  F     +
Sbjct: 530 PDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASAL 589

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +   NL+P+  TF ++I    K    ++A  +LD +  + + P    YNA++ G  +
Sbjct: 590 FEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCK 649

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYV 185
              ++ A   L+EM  +   PDS T+  L++     S  +D ++   +LKS G       
Sbjct: 650 SGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVT 709

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEI 243
           +  L++     G+ E+A   VL+  +      +V +   L+ +L   G   +A  ++ ++
Sbjct: 710 YNILVDGLWKSGQTEQA-ITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDM 768

Query: 244 --KEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDP-----------DYWMDGC 288
             + + C + P  V    LI  L   G ++   +L++E+              + ++DG 
Sbjct: 769 SSRVSRCCV-PNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGL 827

Query: 289 CRLILHCVRFKQLSSATDLLKQLKD---KFKDDEMAMEYHFSEIFCQIATTDPPDVQIGL 345
           C+          ++ A +L++ L+D   +   D +        + C+   TD     +  
Sbjct: 828 CKQ-------SMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGL-CKCGQTDEA-CNVFD 878

Query: 346 DLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKA 405
           D++       G  P+    + L+        ++RAH + +   + G+  +V++Y  +  A
Sbjct: 879 DMIAG-----GYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDA 933

Query: 406 FLASGNRKSASKLLSKM 422
           F  + +   A +LL  M
Sbjct: 934 FCKASHVDEALELLHGM 950



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 101/513 (19%), Positives = 198/513 (38%), Gaps = 69/513 (13%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           A+  + P+  +Y  +I   C   ++   +++ E++V+    P   T N+++ +  ++ + 
Sbjct: 208 ARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDL 267

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL--KEMNLMPTASMYN 120
              RR++  +   +  PN  T+  +I+   K+   D A  L+ ++  K  +++P    YN
Sbjct: 268 EEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYN 327

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQAN--VKPDSQTFSYLIHN---CSNEEDIIKYYEQLK 175
           + + G  ++     A  +++ +   +  V PD+ TFS LI     C   ++    ++ + 
Sbjct: 328 SFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMI 387

Query: 176 SAGGQITKYVFMALINAYTTCGEFEKAR------------------QVVLDAEIPVKSRS 217
           + G       + AL+N      + E+A                    V++DA     SR 
Sbjct: 388 AGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKA-SRV 446

Query: 218 EVKSALVSALASHGRTSDAIIVYEEIKEAGC-------------------NLEPRAVI-- 256
           +    L+  +AS G T + ++ +  I +  C                    L P  +   
Sbjct: 447 DEALELLHGMASRGCTPN-VVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYC 505

Query: 257 ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLK--DK 314
            LI+ L   G   +   LL+ + DPD +   CC           LS   D+ + L+  ++
Sbjct: 506 TLIDGLFRTGRAGQAEALLDAMPDPDTYAFNCC--------INGLSKLGDVSRALQVYNR 557

Query: 315 FKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNA 374
             + E+  +     I    A       Q      + +     L P       L+     A
Sbjct: 558 MLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKN--LQPDVMTFGALIDGLCKA 615

Query: 375 RDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM------PKDDPH 428
             ++ A  I     N G+P NV++Y  +      SG  + A + L +M      P    +
Sbjct: 616 GQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITY 675

Query: 429 VRFVIQACKQTYTIPSLQ---KERGFEKDRDTL 458
              V   C+ + T  +LQ   + + F  D DT+
Sbjct: 676 GSLVYALCRASRTDDALQLVSELKSFGWDPDTV 708



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/270 (21%), Positives = 107/270 (39%), Gaps = 10/270 (3%)

Query: 3    AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
              L ++P + ++  LI   C   +   A +V + M+ G  VP+  T N +++   ++ + 
Sbjct: 846  GSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKM 905

Query: 63   NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
                 +   +    + P+  T+  ++    K    D A  LL  +      P    +N+I
Sbjct: 906  ERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSI 965

Query: 123  MAGYFRKKDVQGALMVLKEME-QANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQI 181
            + G  +      A  +  +M  +  + PD  T+  LI             E L  A    
Sbjct: 966  IDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLF-RTGWAGQAEVLLDAMPDP 1024

Query: 182  TKYVFMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVY 240
              Y F   IN  +  G+  +A   +L+ E +P K    +   L++     G    A  ++
Sbjct: 1025 DTYAFNCCINGLSKLGDVSRALHRMLELELVPDKVTFNI---LIAGACKAGNFEQASALF 1081

Query: 241  EEIKEAGCNLEPRAVI--ALIEHLNSEGEL 268
            EE+     NL+P  +   ALI+ L   G++
Sbjct: 1082 EEMVAK--NLQPDVMTFGALIDGLCKAGQV 1109


>gi|302826103|ref|XP_002994591.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
 gi|300137362|gb|EFJ04342.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
          Length = 599

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 74/345 (21%), Positives = 151/345 (43%), Gaps = 22/345 (6%)

Query: 7   ITPSSASYK---KLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           ++P++A+Y    KL T + ++ K   ALD++E+M +  + P+      I+       +F 
Sbjct: 188 LSPTAATYGCIVKLFTKAGNMAK---ALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFT 244

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              +++  +    LKP+   +  ++    K    D A  +L++++   L+PT   Y +I+
Sbjct: 245 AAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSIL 304

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQ 180
            GY +  ++Q AL V   ++ A ++P   +++ L+   +     E+      ++ + G  
Sbjct: 305 DGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVV 364

Query: 181 ITKYVFMALINAYTTCGEFEKA-----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSD 235
             +  + AL   Y   G+ EKA     R    +  I + +      AL+ A    G    
Sbjct: 365 PNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAY----GALLKACCKSGAMQR 420

Query: 236 AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLIL 293
           A  V+++I +AG          +++    +GEL++   LL ++    + +D  C    I 
Sbjct: 421 AAEVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLNDMQKHGFHLDTICYTSFIK 480

Query: 294 HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDP 338
            C R       T+ L  +++  K  E+    + + I   +A  DP
Sbjct: 481 ACFRSGDTEEVTETLAVMRE--KKLEVNARTYTTLIHGWLAAADP 523



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 91/431 (21%), Positives = 181/431 (41%), Gaps = 53/431 (12%)

Query: 42  LVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAY 101
           LVP     NSI+ A  ++     V  +   +     + N   + ++++   +I+D +   
Sbjct: 118 LVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCL 177

Query: 102 SLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC 161
           S    LK   L PTA+ Y  I+  + +  ++  AL +L+EM++  V P+   ++ ++   
Sbjct: 178 SFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGY 237

Query: 162 SNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAE----IPVK 214
           +   D     K +E + SAG +    ++  L++A+   G  +KA  V+ + E    +P  
Sbjct: 238 ARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPT- 296

Query: 215 SRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQL 274
              E  ++++      G    A+ V++ IK AG  L P  V             N L+  
Sbjct: 297 --IETYTSILDGYVKGGNIQKALEVFDRIKTAG--LRPGVV-----------SYNSLLSG 341

Query: 275 LEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIA 334
           L                     + +Q+ +A  +L ++     +  +  E  ++ +    A
Sbjct: 342 L--------------------AKARQMENARLMLNEM---LANGVVPNERSYTALTEGYA 378

Query: 335 TTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPY 394
                DV+    + Q +K E  L         LL AC  +  ++RA  ++++  +AGL +
Sbjct: 379 R--AGDVEKAFGMFQRMKKE-NLAIDIVAYGALLKACCKSGAMQRAAEVFQQITDAGLKH 435

Query: 395 NVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQACKQTYTIPSLQKERGFEKD 454
           N ++Y  M   +   G    A  LL+ M K   H+  +   C  ++ I +  +    E+ 
Sbjct: 436 NRITYCTMLDGWARKGELSKARDLLNDMQKHGFHLDTI---CYTSF-IKACFRSGDTEEV 491

Query: 455 RDTLLLHKERR 465
            +TL + +E++
Sbjct: 492 TETLAVMREKK 502



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/193 (21%), Positives = 82/193 (42%), Gaps = 3/193 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  SY  L         V  A  + ++M +  L        ++L AC +S       
Sbjct: 363 VVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAA 422

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  I    LK N  T+ +M+    +  +   A  LL+D+++         Y + +   
Sbjct: 423 EVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLNDMQKHGFHLDTICYTSFIKAC 482

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
           FR  D +     L  M +  ++ +++T++ LIH     ++ +  I  YEQ K++G Q+  
Sbjct: 483 FRSGDTEEVTETLAVMREKKLEVNARTYTTLIHGWLAAADPDQAISCYEQAKASGLQLDS 542

Query: 184 YVFMALINAYTTC 196
            +   L++   +C
Sbjct: 543 ALSNCLLSGLISC 555



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 66/400 (16%), Positives = 148/400 (37%), Gaps = 55/400 (13%)

Query: 78  KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALM 137
           KP    +  ++    +  D  +A +  + ++  ++ P   +Y +++  Y   +D++GA+ 
Sbjct: 14  KPVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVA 73

Query: 138 VLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYT 194
             +EM    ++ +   F  +I    +  N E    ++E+ K+        V+ +++ AY 
Sbjct: 74  CTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYC 133

Query: 195 TCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPR 253
             G  E    ++    E   +    + + +++  A        +  +  +K   C L P 
Sbjct: 134 QAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLK--ACGLSPT 191

Query: 254 AVI--ALIEHLNSEGELNRLIQLLEEVH----DPDYW-----MDGCCRLILHCVRFKQLS 302
           A     +++     G + + + +LEE+      P+       MDG         R    +
Sbjct: 192 AATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDG-------YARGGDFT 244

Query: 303 SATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPP----------------------- 339
           +A  + + +       ++ +       FC+    D                         
Sbjct: 245 AAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSIL 304

Query: 340 -------DVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGL 392
                  ++Q  L++   IK   GL P     + LL     AR ++ A L+  E    G+
Sbjct: 305 DGYVKGGNIQKALEVFDRIKTA-GLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGV 363

Query: 393 PYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFV 432
             N  SY  + + +  +G+ + A  +  +M K++  +  V
Sbjct: 364 VPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIV 403


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/291 (21%), Positives = 125/291 (42%), Gaps = 46/291 (15%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +I+  C    +  A  +  +M +  + P   T  +++            R ++  +
Sbjct: 153 SFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKM 212

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
           C   +KPN+  F  +I  + K  D ++   L  +++E  + P A  YNAI+ G  R +D+
Sbjct: 213 CGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDL 272

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMAL 189
           + A  ++ EM  A ++PD+ T++ LI     EE++   ++  + + + G  + +  + AL
Sbjct: 273 KSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTAL 332

Query: 190 INAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
           I                                  S L+  GR++DA  V  E+ EAG  
Sbjct: 333 I----------------------------------SGLSKAGRSADAERVLGEMMEAGLE 358

Query: 250 LEPRAVIALIEHLNSEGELNRLIQLLEEVHDP---------DYWMDGCCRL 291
            +      +I+    +G++   ++LL+E+ +          +  M+G C+L
Sbjct: 359 PDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKL 409



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 80/176 (45%), Gaps = 3/176 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P + +Y  LI   C   ++ +A+++ + MV   +     T  +++    ++       
Sbjct: 287 LRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAE 346

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R+   +    L+P++ T+  +I    +  D  +   LL +++     P    YN IM G+
Sbjct: 347 RVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGF 406

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEEDIIKYYEQLKSAGGQI 181
            +   ++ A M+L  M    V PD  T++ L+   C + +  +   E+LKSA G +
Sbjct: 407 CKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGK--VTDIEELKSAKGTV 460



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/280 (17%), Positives = 121/280 (43%), Gaps = 45/280 (16%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           +TP   +Y  LI   C + ++  A  V E+M    + P+      ++ A  +  +   + 
Sbjct: 182 VTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETML 241

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +    ++P++ T+ ++++   + +D  SA  ++ +++   L P    Y  ++ GY
Sbjct: 242 ELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGY 301

Query: 127 FRKKDVQGAL-----------------------------------MVLKEMEQANVKPDS 151
            +++++  A+                                    VL EM +A ++PD+
Sbjct: 302 CKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDN 361

Query: 152 QTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
            T++ +I     + D+   ++  +++++ G +     +  ++N +   G+ + A  ++L+
Sbjct: 362 TTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNA-DMLLN 420

Query: 209 AEIPVKSRSE--VKSALVSALASHGRTSDAIIVYEEIKEA 246
           A I +    +    + L+     HG+ +D     EE+K A
Sbjct: 421 AMINIGVSPDDITYNILLDGHCKHGKVTD----IEELKSA 456


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 138/326 (42%), Gaps = 27/326 (8%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
             L ++P + ++  LI   C   ++  A  V + M+ G  VP+  T N++++   ++ + 
Sbjct: 173 GSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKM 232

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMN-----LMPTAS 117
                +   +    + P+  T+  ++    K    D A  LL  +         L+P   
Sbjct: 233 ERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKV 292

Query: 118 MYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE-----DIIKYY 171
            +N ++AG  +  + + A  + +EM   N++PD  TF  LI   C   +     DI+   
Sbjct: 293 TFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLM 352

Query: 172 EQLKSAGGQITKYVFMALINAYTTCGEFEKARQ----VVLDAEIPVKSRSEVKSALVSAL 227
             L      +T   + AL++     G  E+A Q    +V    +P    S    +LV AL
Sbjct: 353 GNLGVPPNVVT---YNALVHGLCKSGRIEEACQFLEEMVSSGCVP---DSITYGSLVYAL 406

Query: 228 ASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV----HDPDY 283
               RT DA+ +  E+K  G + +      L++ L   G+  + I +LEE+    H PD 
Sbjct: 407 CRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDS 466

Query: 284 WMDGCCRLILHCVRFKQLSSATDLLK 309
           +    C   LH  R   L+   +LL+
Sbjct: 467 FTFAACFSGLH--RSGNLAGTMELLR 490



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 98/219 (44%), Gaps = 14/219 (6%)

Query: 2   HAKLE------ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQ-----GELVPSTETIN 50
           HA +E      +TP   +Y  L+   C   +V  AL+++  M         LVP   T N
Sbjct: 236 HAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFN 295

Query: 51  SILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEM 110
            ++    ++  F     ++  +   NL+P+  TF ++I    K    ++A  +LD +  +
Sbjct: 296 ILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNL 355

Query: 111 NLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDI 167
            + P    YNA++ G  +   ++ A   L+EM  +   PDS T+  L++     S  +D 
Sbjct: 356 GVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDA 415

Query: 168 IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           ++   +LKS G       +  L++     G+ E+A  V+
Sbjct: 416 LQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVL 454



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 124/289 (42%), Gaps = 29/289 (10%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVRR 67
           P+  +Y  L+   C   K+  A  ++E MV   + P   T + ++ A C+ S     +  
Sbjct: 214 PNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALEL 273

Query: 68  IYPMI---CHHN-LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
           ++ M    C  N L P+  TF  +I+   K  +F+ A +L +++   NL P    + A++
Sbjct: 274 LHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALI 333

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQ 180
            G  +   V+ A  +L  M    V P+  T++ L+H  C +   E+  ++ E++ S+G  
Sbjct: 334 DGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCV 393

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS-----------ALVSALAS 229
                + +L+ A       + A Q+V          SE+KS            LV  L  
Sbjct: 394 PDSITYGSLVYALCRASRTDDALQLV----------SELKSFGWDPDTVTYNILVDGLWK 443

Query: 230 HGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            G+T  AI V EE+   G   +     A    L+  G L   ++LL  V
Sbjct: 444 SGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLAGTMELLRVV 492



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 131/328 (39%), Gaps = 56/328 (17%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQG--ELVPSTETINSILHA-CEESYE---F 62
           P+  +Y  LI   C + ++  A +++++M +   +++P+  T NS L   C++S      
Sbjct: 105 PNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEAC 164

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
            L+R +        + P++ TF ++I    K    D A S+ DD+     +P    YNA+
Sbjct: 165 ELMRSLRDG--SLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNAL 222

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI---------------------HNC 161
           + G  +   ++ A  +++ M    V PD  T+S L+                       C
Sbjct: 223 VNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGC 282

Query: 162 S----------------------NEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEF 199
           +                      N E     +E++ +   Q     F ALI+     G+ 
Sbjct: 283 TPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQV 342

Query: 200 EKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
           E AR ++ L   + V       +ALV  L   GR  +A    EE+  +GC  +     +L
Sbjct: 343 EAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSL 402

Query: 259 IEHLNSEGELNRLIQLLEEVH----DPD 282
           +  L      +  +QL+ E+     DPD
Sbjct: 403 VYALCRASRTDDALQLVSELKSFGWDPD 430



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 68/328 (20%), Positives = 135/328 (41%), Gaps = 19/328 (5%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           A+  + P+  +Y  +I   C    +   +++ E++V+    P   T N+++ +  ++ + 
Sbjct: 29  ARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDL 88

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL--KEMNLMPTASMYN 120
              RR++  +      PN  T+  +I+   K+   D A  L+ ++  K  +++P    YN
Sbjct: 89  EEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYN 148

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQAN--VKPDSQTFSYLIHN---CSNEEDIIKYYEQLK 175
           + + G  ++     A  +++ +   +  V PD+ TFS LI     C   ++    ++ + 
Sbjct: 149 SFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMI 208

Query: 176 SAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTS 234
           + G       + AL+N      + E+A  ++    +  V       S LV A     R  
Sbjct: 209 AGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVD 268

Query: 235 DAIIVYEEIKEAGCN---LEPRAVI--ALIEHLNSEGELNRLIQLLEEV----HDPDYWM 285
           +A+ +   +   GC    L P  V    LI      G   +   L EE+      PD   
Sbjct: 269 EALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMT 328

Query: 286 DGCCRLILHCVRFKQLSSATDLLKQLKD 313
            G   LI    +  Q+ +A D+L  + +
Sbjct: 329 FG--ALIDGLCKAGQVEAARDILDLMGN 354


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/291 (21%), Positives = 125/291 (42%), Gaps = 46/291 (15%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +I+  C    +  A  +  +M +  + P   T  +++            R ++  +
Sbjct: 277 SFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKM 336

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
           C   +KPN+  F  +I  + K  D ++   L  +++E  + P A  YNAI+ G  R +D+
Sbjct: 337 CGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDL 396

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMAL 189
           + A  ++ EM  A ++PD+ T++ LI     EE++   ++  + + + G  + +  + AL
Sbjct: 397 KSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTAL 456

Query: 190 INAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
           I                                  S L+  GR++DA  V  E+ EAG  
Sbjct: 457 I----------------------------------SGLSKAGRSADAERVLGEMMEAGLE 482

Query: 250 LEPRAVIALIEHLNSEGELNRLIQLLEEVHDP---------DYWMDGCCRL 291
            +      +I+    +G++   ++LL+E+ +          +  M+G C+L
Sbjct: 483 PDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKL 533



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 80/176 (45%), Gaps = 3/176 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P + +Y  LI   C   ++ +A+++ + MV   +     T  +++    ++       
Sbjct: 411 LRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAE 470

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R+   +    L+P++ T+  +I    +  D  +   LL +++     P    YN IM G+
Sbjct: 471 RVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGF 530

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEEDIIKYYEQLKSAGGQI 181
            +   ++ A M+L  M    V PD  T++ L+   C + +  +   E+LKSA G +
Sbjct: 531 CKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGK--VTDIEELKSAKGTV 584



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/280 (17%), Positives = 121/280 (43%), Gaps = 45/280 (16%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           +TP   +Y  LI   C + ++  A  V E+M    + P+      ++ A  +  +   + 
Sbjct: 306 VTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETML 365

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +    ++P++ T+ ++++   + +D  SA  ++ +++   L P    Y  ++ GY
Sbjct: 366 ELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGY 425

Query: 127 FRKKDVQGAL-----------------------------------MVLKEMEQANVKPDS 151
            +++++  A+                                    VL EM +A ++PD+
Sbjct: 426 CKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDN 485

Query: 152 QTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
            T++ +I     + D+   ++  +++++ G +     +  ++N +   G+ + A  ++L+
Sbjct: 486 TTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNA-DMLLN 544

Query: 209 AEIPVKSRSE--VKSALVSALASHGRTSDAIIVYEEIKEA 246
           A I +    +    + L+     HG+ +D     EE+K A
Sbjct: 545 AMINIGVSPDDITYNILLDGHCKHGKVTD----IEELKSA 580


>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
 gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 134/317 (42%), Gaps = 6/317 (1%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           KL + P++ S+  LI   C   KV  ALD V +M +   VP T + N+IL A  +     
Sbjct: 206 KLGVVPNTNSFNILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQ 265

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             R +   +    L PN  T+  ++    ++     A  +++ +   NL+PT   YN ++
Sbjct: 266 EARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLV 325

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY---EQLKSAGGQ 180
            G+     +  A  +  EME+ NV PD  T++ LI  CS   D  + Y   E++   G +
Sbjct: 326 NGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVK 385

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIV 239
                +  ++      G   +A   +   E    S   V  + L+ A    G+   A  +
Sbjct: 386 CNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRM 445

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFK 299
            +E+   G  ++   +  ++  L  E +L+    LL       Y +D     IL    FK
Sbjct: 446 MDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFK 505

Query: 300 --QLSSATDLLKQLKDK 314
             +   A +L  ++K++
Sbjct: 506 DEKGDRALNLWDEMKER 522



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/319 (21%), Positives = 131/319 (41%), Gaps = 14/319 (4%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  L+   C+  K+  A  + ++M +  ++P   T N+++  C +  + + V  +
Sbjct: 316 PTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSL 375

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    +K N+ T+  ++    K  +   A + LD ++E  L P    YN ++  Y +
Sbjct: 376 IEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCK 435

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMA 188
              +  A  ++ EM    +K D+ T + ++H    E+ + + Y  L SA  +   Y+   
Sbjct: 436 AGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKR--GYILDE 493

Query: 189 LINAYTTCGEFEKAR-QVVLDAEIPVKSRSEVKS-----ALVSALASHGRTSDAIIVYEE 242
           +       G F+  +    L+    +K R  + S     +++  L    +   AI    E
Sbjct: 494 VSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNE 553

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQ----LLEEVHDPDYWMDGCCRLILHCVRF 298
           + E G   +      +I     EG + +  Q    ++E +  PD +   C  L+    R 
Sbjct: 554 MLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYT--CNILLRGLCRE 611

Query: 299 KQLSSATDLLKQLKDKFKD 317
             L  A  L   L  K KD
Sbjct: 612 GMLEKALKLFNTLVSKGKD 630



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 72/161 (44%), Gaps = 16/161 (9%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA------CEES 59
           +I PS+ +Y  +I   C   KV  A+D + +M++  LVP   T N I+H        E++
Sbjct: 523 QIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKA 582

Query: 60  YEFN--LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTAS 117
           ++F+  ++  ++        KP+  T   ++    +    + A  L + L          
Sbjct: 583 FQFHNEMIENLF--------KPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVV 634

Query: 118 MYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            YN I++   ++   + A  +L EME   + PD  T+  +I
Sbjct: 635 TYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVII 675



 Score = 42.7 bits (99), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 50/249 (20%), Positives = 117/249 (46%), Gaps = 21/249 (8%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDS---A 100
           PS E +++ + A  +  + +L  +I+  +   N +PN  T  ++++  V+     S   A
Sbjct: 138 PSKELLDTSIGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLA 197

Query: 101 YSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160
             +L D  ++ ++P  + +N ++ GY  +  V+ AL  + +M +    PD+ +++ ++  
Sbjct: 198 RQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDA 257

Query: 161 CSNEEDIIKYYEQL---KSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRS 217
                 + +  + L   KS G    K+ +  L+  Y   G  ++A +V     I + +R+
Sbjct: 258 LLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKV-----IEIMTRN 312

Query: 218 EV------KSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELN 269
            +       + LV+   + G+  +A  + +E+++   N+ P  V    LI+  +   + +
Sbjct: 313 NLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKM--NVLPDVVTYNTLIDGCSQWRDSS 370

Query: 270 RLIQLLEEV 278
            +  L+EE+
Sbjct: 371 EVYSLIEEM 379


>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
          Length = 703

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 88/403 (21%), Positives = 159/403 (39%), Gaps = 23/403 (5%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+ A+Y  ++   C   +     +V E+MV   L P   T   ++H    S + +   R+
Sbjct: 262 PNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARV 321

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           Y  I    L  ++  + S++    +      A+   D      L      YN ++ G F 
Sbjct: 322 YSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLR-NLRTYNIMIKGLFD 380

Query: 129 KKDVQGALMVLKEMEQ-ANVKPDSQTFSYLIHN-CSN--EEDIIKYYEQLKSAGGQITKY 184
              V  A+ +   +E+     PD+ TF  LIH  C N         +E+ + +G Q+  +
Sbjct: 381 SGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVF 440

Query: 185 VFMALINAYTTCGEFEKARQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
            + ++IN     G    A +V   +D +   K  S + +AL+S      RTSDA+ +Y +
Sbjct: 441 SYSSMINGLCNVGRLVDAVKVYEKMDKD-GCKPNSHIYNALISGFCQVYRTSDAVRIYSK 499

Query: 243 IKEAGCNLEPRAVIALIEHL------NSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCV 296
           + + GC+        LI+ L           + R  +++E    PD    G   LI    
Sbjct: 500 MADNGCSPTVITYNTLIDGLCKAEKYQEASSVAR--EMVENGFTPDITTYG--SLIRGLF 555

Query: 297 RFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELG 356
             K++  A  + KQ+  K    ++ M        C     D       L +   +K++  
Sbjct: 556 SDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDE-----ALHVFSDMKEKKN 610

Query: 357 LPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSY 399
            PP+    + L+        + +A  +W      GL  +++SY
Sbjct: 611 CPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISY 653



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/288 (20%), Positives = 126/288 (43%), Gaps = 10/288 (3%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++ P   +Y  L+       ++  ALD++++M +  + P     N++L  C ++ EF  V
Sbjct: 188 QVAPDCITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQPDVVCYNALLGGCFKAGEFEKV 247

Query: 66  RRIY-PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
            R++  ++     +PN  T+  M+    K   F     + + +   NL P    Y  ++ 
Sbjct: 248 MRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIH 307

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAG--GQIT 182
           G  R  DV GA  V  E+ +  +  D+  ++ L+        + + ++   SAG  G   
Sbjct: 308 GLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRN 367

Query: 183 KYVFMALINAYTTCGEFEKARQV--VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
              +  +I      G  ++A ++  +L+ ++     +     L+  L  +G  + A  ++
Sbjct: 368 LRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIF 427

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC 288
           EE + +G  L+  +  ++I  L + G L   +++ E++       DGC
Sbjct: 428 EEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDK-----DGC 470



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 80/392 (20%), Positives = 151/392 (38%), Gaps = 50/392 (12%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICH----HNLKPNSETFRSMISLNVKIKDFDS 99
           P   + N++L A   +  F+     +  + H      + PN +T+  ++       D D 
Sbjct: 117 PGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDR 176

Query: 100 AYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159
           A +L D L+   + P    Y+ +M G  ++  +  AL +L EM ++ V+PD   ++ L+ 
Sbjct: 177 AVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQPDVVCYNALLG 236

Query: 160 NC---SNEEDIIKYYEQL-KSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKS 215
            C      E +++ +++L K  G +     +  +++     G F++  + V +  +    
Sbjct: 237 GCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGE-VWERMVANNL 295

Query: 216 RSEVKS--ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQ 273
           + +V +   L+  L   G    A  VY EI + G  ++     +L++     G +    +
Sbjct: 296 QPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWK 355

Query: 274 LLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQI 333
             +                      + L +   ++K L D    DE A+E          
Sbjct: 356 FWDSA---------------GFAGLRNLRTYNIMIKGLFDSGMVDE-AIEL--------- 390

Query: 334 ATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLP 393
                       DLL+  KD   +P +      + G C N     +A  I++E   +G  
Sbjct: 391 -----------WDLLE--KDVACIPDTVTFGTLIHGLCQNGF-ANKAFTIFEEARVSGKQ 436

Query: 394 YNVLSYLWMYKAFLASGNRKSASKLLSKMPKD 425
            +V SY  M       G    A K+  KM KD
Sbjct: 437 LDVFSYSSMINGLCNVGRLVDAVKVYEKMDKD 468



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 117/282 (41%), Gaps = 19/282 (6%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQM-VQGELVPSTETINSILHACEESYEFNLVRR 67
           P + ++  LI   C     + A  + E+  V G+ +      + I   C      + V+ 
Sbjct: 402 PDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVK- 460

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +Y  +     KPNS  + ++IS   ++     A  +   + +    PT   YN ++ G  
Sbjct: 461 VYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLC 520

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKY 184
           + +  Q A  V +EM +    PD  T+  LI    ++   +D +  ++Q+   G ++   
Sbjct: 521 KAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVM 580

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVS------ALASHGRTSDAII 238
           +   LI+   + G+ ++A  V  D    +K +      LV+       L   G    A  
Sbjct: 581 MHNILIHGLCSAGKVDEALHVFSD----MKEKKNCPPNLVTYNTLMDGLYETGYIDKAAT 636

Query: 239 VYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEV 278
           ++  I E G  LEP  +     I+ L S   ++  IQLL+EV
Sbjct: 637 LWTSITEDG--LEPDIISYNTRIKGLCSCDRIHEGIQLLDEV 676



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/277 (17%), Positives = 101/277 (36%), Gaps = 40/277 (14%)

Query: 41  ELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSA 100
            + P+ +T N +L +     + +    ++  +    + P+  T+ +++    K    D A
Sbjct: 153 RIAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHA 212

Query: 101 YSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALM----------------------- 137
             LLD++    + P    YNA++ G F+  + +  +                        
Sbjct: 213 LDLLDEMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLD 272

Query: 138 -------------VLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQI 181
                        V + M   N++PD  T+  LIH      D+    + Y ++   G  I
Sbjct: 273 GLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVI 332

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
              ++ +L+  +   G  ++A +    A           + ++  L   G   +AI +++
Sbjct: 333 DAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWD 392

Query: 242 EI-KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEE 277
            + K+  C  +      LI  L   G  N+   + EE
Sbjct: 393 LLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEE 429


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 96/458 (20%), Positives = 180/458 (39%), Gaps = 49/458 (10%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I+ ++ SY  +I   C L KV  A  ++ QM      P   + ++++       E     
Sbjct: 254 ISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKAL 313

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           ++   +    LKPN  T+ S+I L  KI     A  +L ++    ++P   +Y  ++ G+
Sbjct: 314 KLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGF 373

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITK 183
           F+   V+ A     EM    + PD  T++ LI        +I+    + ++ S G +  +
Sbjct: 374 FKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDE 433

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             +  LI+ Y   GE   A  +  +  ++ +        AL+  L  HG    A  + +E
Sbjct: 434 VTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDE 493

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPD-----YWMDGCCRLIL 293
           +++ G  L      +++  +   G + + I+L++E+     DPD       +D  CRL  
Sbjct: 494 MRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRL-- 551

Query: 294 HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGL-------- 345
                  +  A  LL+++ D+     +         FC +   +  D  +G         
Sbjct: 552 -----GDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVP 606

Query: 346 DLLQF--------IKDEL-------------GLPPSRKCLDFLLGACVNARDLKRAHLIW 384
           D + +        I++ +             G+ P     + L+     AR+LK A  ++
Sbjct: 607 DAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLY 666

Query: 385 KEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           KE    G    V SY  + K F        A +L  +M
Sbjct: 667 KEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEM 704



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 97/204 (47%), Gaps = 3/204 (1%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +I+P   +Y  LI       KV    ++  +M+   L P   T  +++    ++ E    
Sbjct: 393 KISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNA 452

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             ++  +    + PN  T+ ++I    K  + D+A  LLD++++  L     +YN+++ G
Sbjct: 453 FSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNG 512

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA---GGQIT 182
             +  +++ A+ ++KEME A + PD+ T++ +I       DI K ++ L+     G Q T
Sbjct: 513 ICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPT 572

Query: 183 KYVFMALINAYTTCGEFEKARQVV 206
              F  L+N +   G  E   +++
Sbjct: 573 VVTFNVLMNGFCMLGMLEDGDRLL 596



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 79/163 (48%), Gaps = 4/163 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSIL--HACEESYEFNL 64
           + P+  ++  L+   C L  +     ++  M++  +VP   T N+++  H    S   N 
Sbjct: 569 LQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNS--MNT 626

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
             +IY  + +  + P+S T+  +I  + K ++   A+ L  ++ E   +PT + YNA++ 
Sbjct: 627 TTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIK 686

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI 167
            +++K+    A  + +EM    +  D + +++ +  C  E D+
Sbjct: 687 RFYKKRKFXEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDV 729



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/204 (20%), Positives = 97/204 (47%), Gaps = 3/204 (1%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +I P +  Y  LI     L  V  A    ++M+  ++ P   T  +++    +  +    
Sbjct: 358 KIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEP 417

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           + ++  +    LKP+  T+ ++I +  K  +  +A+SL +++ +M + P    Y A++ G
Sbjct: 418 QNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDG 477

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQIT 182
             +  ++  A  +L EM +  ++ +   ++ +++      N E  IK  ++++ AG    
Sbjct: 478 LCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPD 537

Query: 183 KYVFMALINAYTTCGEFEKARQVV 206
              +  +I+AY   G+ +KA +++
Sbjct: 538 AITYTTVIDAYCRLGDIDKAHKLL 561



 Score = 45.1 bits (105), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 68/407 (16%), Positives = 163/407 (40%), Gaps = 30/407 (7%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A  ++++++   LV + ++ N+ L     + E   +     + C + +  N+ ++  +I 
Sbjct: 209 ARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEG--IEMAIKVFCEYGISWNTTSYNIIIY 266

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              ++     A+ LL  +   +  P    Y+ ++ GY    +++ AL ++ +M+   +KP
Sbjct: 267 SLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKP 326

Query: 150 DSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           +  T++ +I          +  K   ++ S        V+  LI+ +   G    A +  
Sbjct: 327 NRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANK-W 385

Query: 207 LDAEIPVKSRSE--VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
            D  +  K   +    + L+      G+  +   ++ E+   G   +      LI+    
Sbjct: 386 FDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCK 445

Query: 265 EGEL-------NRLIQLLEEVHDPDY--WMDGCCRLILHCVRFKQLSSATDLLKQLKDKF 315
            GE+       N ++Q+    +   Y   +DG C       +  +L +A +LL +++ K 
Sbjct: 446 AGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLC-------KHGELDTANELLDEMRKKG 498

Query: 316 KDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNAR 375
               + +        C+       +++  + L++ + +  G+ P       ++ A     
Sbjct: 499 LQLNVCIYNSMVNGICKAG-----NIEQAIKLMKEM-EVAGIDPDAITYTTVIDAYCRLG 552

Query: 376 DLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           D+ +AH + +E  + GL   V+++  +   F   G  +   +LL  M
Sbjct: 553 DIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWM 599


>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
          Length = 703

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 88/403 (21%), Positives = 159/403 (39%), Gaps = 23/403 (5%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+ A+Y  ++   C   +     +V E+MV   L P   T   ++H    S + +   R+
Sbjct: 262 PNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARV 321

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           Y  I    L  ++  + S++    +      A+   D      L      YN ++ G F 
Sbjct: 322 YSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLR-NLRTYNIMIKGLFD 380

Query: 129 KKDVQGALMVLKEMEQ-ANVKPDSQTFSYLIHN-CSN--EEDIIKYYEQLKSAGGQITKY 184
              V  A+ +   +E+     PD+ TF  LIH  C N         +E+ + +G Q+  +
Sbjct: 381 SGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVF 440

Query: 185 VFMALINAYTTCGEFEKARQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
            + ++IN     G    A +V   +D +   K  S + +AL+S      RTSDA+ +Y +
Sbjct: 441 SYSSMINGLCNVGRLVDAVKVYEKMDKD-GCKPNSHIYNALISGFCQVYRTSDAVRIYSK 499

Query: 243 IKEAGCNLEPRAVIALIEHL------NSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCV 296
           + + GC+        LI+ L           + R  +++E    PD    G   LI    
Sbjct: 500 MADNGCSPTVITYNTLIDGLCKAEKYQEASSVAR--EMVENGFTPDITTYG--SLIRGLF 555

Query: 297 RFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELG 356
             K++  A  + KQ+  K    ++ M        C     D       L +   +K++  
Sbjct: 556 SDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDE-----ALHVFSDMKEKKN 610

Query: 357 LPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSY 399
            PP+    + L+        + +A  +W      GL  +++SY
Sbjct: 611 CPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISY 653



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/288 (20%), Positives = 126/288 (43%), Gaps = 10/288 (3%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++ P   +Y  L+       ++  ALD++++M +  + P     N++L  C ++ EF  V
Sbjct: 188 QVAPDRITYSTLMCGLAKQDRLDHALDLLDEMPRSRVQPDVVCYNALLGGCFKAGEFEKV 247

Query: 66  RRIY-PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
            R++  ++     +PN  T+  M+    K   F     + + +   NL P    Y  ++ 
Sbjct: 248 MRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIH 307

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAG--GQIT 182
           G  R  DV GA  V  E+ +  +  D+  ++ L+        + + ++   SAG  G   
Sbjct: 308 GLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRN 367

Query: 183 KYVFMALINAYTTCGEFEKARQV--VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
              +  +I      G  ++A ++  +L+ ++     +     L+  L  +G  + A  ++
Sbjct: 368 LRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIF 427

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC 288
           EE + +G  L+  +  ++I  L + G L   +++ E++       DGC
Sbjct: 428 EEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDK-----DGC 470



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 80/392 (20%), Positives = 151/392 (38%), Gaps = 50/392 (12%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICH----HNLKPNSETFRSMISLNVKIKDFDS 99
           P   + N++L A   +  F+     +  + H      + PN +T+  ++       D D 
Sbjct: 117 PGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDR 176

Query: 100 AYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159
           A +L D L+   + P    Y+ +M G  ++  +  AL +L EM ++ V+PD   ++ L+ 
Sbjct: 177 AVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALDLLDEMPRSRVQPDVVCYNALLG 236

Query: 160 NC---SNEEDIIKYYEQL-KSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKS 215
            C      E +++ +++L K  G +     +  +++     G F++  + V +  +    
Sbjct: 237 GCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGE-VWERMVANNL 295

Query: 216 RSEVKS--ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQ 273
           + +V +   L+  L   G    A  VY EI + G  ++     +L++     G +    +
Sbjct: 296 QPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWK 355

Query: 274 LLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQI 333
             +                      + L +   ++K L D    DE A+E          
Sbjct: 356 FWDSA---------------GFAGLRNLRTYNIMIKGLFDSGMVDE-AIEL--------- 390

Query: 334 ATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLP 393
                       DLL+  KD   +P +      + G C N     +A  I++E   +G  
Sbjct: 391 -----------WDLLE--KDVACIPDTVTFGTLIHGLCQNGF-ANKAFTIFEEARVSGKQ 436

Query: 394 YNVLSYLWMYKAFLASGNRKSASKLLSKMPKD 425
            +V SY  M       G    A K+  KM KD
Sbjct: 437 LDVFSYSSMINGLCNVGRLVDAVKVYEKMDKD 468



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 117/282 (41%), Gaps = 19/282 (6%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQM-VQGELVPSTETINSILHACEESYEFNLVRR 67
           P + ++  LI   C     + A  + E+  V G+ +      + I   C      + V+ 
Sbjct: 402 PDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVK- 460

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +Y  +     KPNS  + ++IS   ++     A  +   + +    PT   YN ++ G  
Sbjct: 461 VYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLC 520

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKY 184
           + +  Q A  V +EM +    PD  T+  LI    ++   +D +  ++Q+   G ++   
Sbjct: 521 KAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVM 580

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVS------ALASHGRTSDAII 238
           +   LI+   + G+ ++A  V  D    +K +      LV+       L   G    A  
Sbjct: 581 MHNILIHGLCSAGKVDEALHVFSD----MKEKKNCPPNLVTYNTLMDGLYETGYIDKAAT 636

Query: 239 VYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEV 278
           ++  I E G  LEP  +     I+ L S   ++  IQLL+EV
Sbjct: 637 LWTSITEDG--LEPDIISYNTRIKGLCSCDRIHEGIQLLDEV 676



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/279 (17%), Positives = 101/279 (36%), Gaps = 40/279 (14%)

Query: 41  ELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSA 100
            + P+ +T N +L +     + +    ++  +    + P+  T+ +++    K    D A
Sbjct: 153 RIAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHA 212

Query: 101 YSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALM----------------------- 137
             LLD++    + P    YNA++ G F+  + +  +                        
Sbjct: 213 LDLLDEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLD 272

Query: 138 -------------VLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQI 181
                        V + M   N++PD  T+  LIH      D+    + Y ++   G  I
Sbjct: 273 GLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVI 332

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
              ++ +L+  +   G  ++A +    A           + ++  L   G   +AI +++
Sbjct: 333 DAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWD 392

Query: 242 EI-KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279
            + K+  C  +      LI  L   G  N+   + EE  
Sbjct: 393 LLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEAR 431


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 102/500 (20%), Positives = 184/500 (36%), Gaps = 93/500 (18%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K +  P+ ++Y  LI   C   +V  A  V + M +  L P+  T+N ++    ++ + +
Sbjct: 400 KKDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLD 459

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               I+  + H    P+  TF S+I    K    D AY L + + + + +P A +Y +++
Sbjct: 460 EACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLI 519

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK 183
             +F+    +    + KEM      PD                                 
Sbjct: 520 KSFFKCGRKEDGHKIFKEMIHRGCSPD--------------------------------- 546

Query: 184 YVFMALINAYTTC----GEFEKARQVVLDAEIPVKSRSEVK-----SALVSALASHGRTS 234
              + L+NAY  C    GE  K R +  +    +KSR  +      S L+  L   G   
Sbjct: 547 ---LRLLNAYMDCVFKAGETGKGRALFEE----IKSRGFIPDVMSYSILIHGLVKAGFAR 599

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV----HDPDYWMDGCCR 290
           +   ++  +KE GC L+  A    I+     G++N+  QLLEE+      P     G   
Sbjct: 600 ETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYG--S 657

Query: 291 LILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTD------------- 337
           +I    +  +L  A  L ++ K    +  + +     + F ++   D             
Sbjct: 658 VIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKG 717

Query: 338 -PPDVQI----------------GLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRA 380
             P+V                   L   Q +K+  G  P+      L+      R   +A
Sbjct: 718 LTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKG-TPNHITYSILINGLCRVRKFNKA 776

Query: 381 HLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK-----DDPHVRFVIQA 435
            + W+E +  GL  N ++Y  M      +GN   AS L  +        D      +I+ 
Sbjct: 777 FVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEG 836

Query: 436 CKQTYTIPSLQKERGFEKDR 455
              +Y+  +++  + FE+ R
Sbjct: 837 L--SYSRRAMEAYKIFEETR 854



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/260 (19%), Positives = 112/260 (43%), Gaps = 10/260 (3%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y   I   C   KV+ A  ++E+M      P+  T  S++    +    +    ++   
Sbjct: 619 AYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEA 678

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
             + L+ N   + S+I    K+   D AY ++++L +  L P    +N ++    + +++
Sbjct: 679 KSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEI 738

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMAL 189
             AL+  + M+     P+  T+S LI+         K   ++++++  G +     +  +
Sbjct: 739 NEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTM 798

Query: 190 INAYTTCGEFEKARQVV----LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
           I      G   +A  +      +  +P    S   +A++  L+   R  +A  ++EE + 
Sbjct: 799 IAGLAKAGNIAEASSLFERFKANGGVP---DSASYNAIIEGLSYSRRAMEAYKIFEETRM 855

Query: 246 AGCNLEPRAVIALIEHLNSE 265
            GCN+  +  IAL++ L  +
Sbjct: 856 KGCNIHTKTCIALLDALQKD 875



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 122/269 (45%), Gaps = 15/269 (5%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           PS+ +  +LI       K+    D+++ M + +  P+     +++ A     E +++  +
Sbjct: 161 PSTKTCIELILSCIKSNKLREGFDLIQCMRKFKFRPAFSAYTTLIGALSSVQESDIMLTL 220

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +     + +   F ++I +  +    D+A SLLD++K   L     +YN  +  + +
Sbjct: 221 FHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFGK 280

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYV 185
              V  A     E++   + PD  T++ +I   C     ++ ++ +EQ++        Y 
Sbjct: 281 AGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYA 340

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSA-----LVSALASHGRTSDAIIVY 240
           +  +I  Y + G+F++A  ++       K+R  + S      +++ L   GR  +A+  +
Sbjct: 341 YNTMIMGYGSAGKFDEAYSLLERQ----KARGCIPSVIAYNCILTCLGKKGRLGEALRTF 396

Query: 241 EEI-KEAGCNLEPRAVIALIEHLNSEGEL 268
           EE+ K+A  NL    V  LI+ L   GE+
Sbjct: 397 EEMKKDAAPNLSTYNV--LIDMLCKAGEV 423



 Score = 42.0 bits (97), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 31/147 (21%), Positives = 64/147 (43%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           +TP+  ++  L+       +++ AL   + M   +  P+  T + +++      +FN   
Sbjct: 718 LTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAF 777

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
             +  +    LKPN+ T+ +MI+   K  +   A SL +  K    +P ++ YNAI+ G 
Sbjct: 778 VFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGL 837

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQT 153
              +    A  + +E         ++T
Sbjct: 838 SYSRRAMEAYKIFEETRMKGCNIHTKT 864


>gi|222635128|gb|EEE65260.1| hypothetical protein OsJ_20463 [Oryza sativa Japonica Group]
          Length = 1443

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/301 (20%), Positives = 139/301 (46%), Gaps = 13/301 (4%)

Query: 6   EITPSSASYKKLITYSC--DLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +I P   S+  LI        L   VAL+++ ++ Q  L P   T N+++ AC +    +
Sbjct: 251 DIEPDLVSFNTLINARAKSGCLAAGVALELLHEVRQAGLRPDAITYNTLISACSQGSNLD 310

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               ++  +     +P+  T+ +M+S++ +      A  +  +L E    P A  YN+++
Sbjct: 311 DAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLL 370

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQ 180
             + ++ DV+    V +E+ +A  + D  T++ +IH       +   +  Y+++++ G  
Sbjct: 371 YAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCT 430

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
                +  L+++        +A +V+ + A+  +K      SAL+ A A  GR  DA   
Sbjct: 431 PDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERT 490

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQL----LEEVHDPDYWMDGCCRLILHC 295
           ++ + E+G   +  A + +++      E  +L+ L    +++ + PD   DG  +++L  
Sbjct: 491 FDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPD---DGLYQVLLAA 547

Query: 296 V 296
           +
Sbjct: 548 L 548



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 121/267 (45%), Gaps = 11/267 (4%)

Query: 82  ETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQG--ALMVL 139
           + F +M+ +  +   FD A  LLD +++ ++ P    +N ++    +   +    AL +L
Sbjct: 222 QVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELL 281

Query: 140 KEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTC 196
            E+ QA ++PD+ T++ LI  C   SN +D +  +E++ ++  +   + + A+++ +  C
Sbjct: 282 HEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRC 341

Query: 197 GEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255
           G+ ++A  +  +  E   +  +   ++L+ A A  G       V EE+ +AG   +    
Sbjct: 342 GKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITY 401

Query: 256 IALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL--HCVRFKQLSSATDLLKQLKD 313
             +I      G L+  + L +E+       D     +L     +  ++S A  +L+++ D
Sbjct: 402 NTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMAD 461

Query: 314 KFKDDEMAMEYHFSEIFCQIATTDPPD 340
                 +     FS + C  A +   D
Sbjct: 462 AGLKPTLVT---FSALICAYAKSGRQD 485



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 86/182 (47%), Gaps = 12/182 (6%)

Query: 115 TASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH-----NCSNEEDIIK 169
           T  ++NA+M  Y R      A  +L  M   +++PD  +F+ LI+      C      ++
Sbjct: 220 TVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALE 279

Query: 170 YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSAL 227
              +++ AG +     +  LI+A +     + A   V +  I  + R ++ +  A+VS  
Sbjct: 280 LLHEVRQAGLRPDAITYNTLISACSQGSNLDDA-VAVFEEMIASECRPDLWTYNAMVSVH 338

Query: 228 ASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWM 285
              G+  +A ++++E+ E G   +P AV   +L+     EG++ R+ ++ EE+    +  
Sbjct: 339 GRCGKAQEAELMFKELVEKG--FQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRK 396

Query: 286 DG 287
           DG
Sbjct: 397 DG 398



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 46/243 (18%), Positives = 114/243 (46%), Gaps = 12/243 (4%)

Query: 31   LDVVEQMVQGELVPSTETINSILHACEESYE----FNLVRRIYPMICHHNLKPNSETFRS 86
            ++V   +++  L P  +T N+++     ++     F L   +Y M     L P  E+++ 
Sbjct: 942  IEVYHSILEAGLEPDEDTYNTLIVMYSRNFRPEEGFTL---LYEM-GKRGLTPKLESYKI 997

Query: 87   MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
            +++ + K K ++ A  L ++++        S+Y+ +M  Y   ++   A  +L  M++  
Sbjct: 998  LLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDG 1057

Query: 147  VKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203
            ++P   T   L+ +     + ++  K    LKS+  +I+   +  +++AY    ++    
Sbjct: 1058 IEPTIATMHILMTSYGTSGHPDEAEKVLNSLKSSNLEISTLPYSTVLDAYLRNRDYSLGI 1117

Query: 204  QVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
              +L+ +   V+   +V ++ + A +   +T DAI++ + +++ G +L  R +      L
Sbjct: 1118 TKLLEMKRDGVEPDHQVWTSFIRAASLCEQTDDAILLLKSLQDCGFDLPIRLLTERTSSL 1177

Query: 263  NSE 265
             +E
Sbjct: 1178 FTE 1180



 Score = 38.5 bits (88), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 4/149 (2%)

Query: 33  VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92
           VV+++   ++  S  T+  +L A  ++ +   V +IY  +      PN   +R MISL  
Sbjct: 839 VVQELQDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMISLLC 898

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
             K F     ++ +++     P   + N ++  Y    +    + V   + +A ++PD  
Sbjct: 899 HNKRFRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDED 958

Query: 153 TFSYLI----HNCSNEEDIIKYYEQLKSA 177
           T++ LI     N   EE     YE  K  
Sbjct: 959 TYNTLIVMYSRNFRPEEGFTLLYEMGKRG 987


>gi|428179291|gb|EKX48163.1| hypothetical protein GUITHDRAFT_86178 [Guillardia theta CCMP2712]
          Length = 557

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 137/315 (43%), Gaps = 43/315 (13%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEES------- 59
           + PS   Y  LI     L ++  A + +  MV+G   PS   IN++L AC  +       
Sbjct: 29  LRPSVHCYGTLIKAYGQLGQLEAAFETLNGMVKGGPAPSIRVINALLQACVRAGNLTAAQ 88

Query: 60  -------------------YEFNL----------VRRIYPMIC---HHNLKPNSETFRSM 87
                                FN+          V + + M+        KP+  T+ ++
Sbjct: 89  TLFSSLRGAGLCISLQPTGVSFNIMVNAYARRRKVEKAFKMLLEMRRAGCKPDQITYTTL 148

Query: 88  ISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANV 147
           +   V    FD A  LL +++E+ + P A  YN I+ G  +K     A  +L+ ME+  V
Sbjct: 149 VKACVAAGQFDRAERLLGEMEELGIPPNAYSYNCILYGLAQKLQWGKATRLLQRMEEDGV 208

Query: 148 KPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204
           + +  ++SY I  C      ++    +E+++  G     +V   +++ Y   G  ++A+ 
Sbjct: 209 EANLLSYSYCILACVRARRMKEASALFEEMRRKGIVPNLFVMNTMMSGYAAKGMVDEAQG 268

Query: 205 VV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
           ++ L  ++ +K+ +   S+L+ A  + G    A+ V  +++E G  ++      +++   
Sbjct: 269 IMKLLQDMRIKANAMTFSSLIEAFINAGYADKAVEVKRKMEELGVEVDMVVSTQMLKAYT 328

Query: 264 SEGELNRLIQLLEEV 278
           S G++   I+ LEE+
Sbjct: 329 SMGKVEEAIEKLEEI 343



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/216 (20%), Positives = 101/216 (46%), Gaps = 7/216 (3%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  L+       +   A  ++ +M +  + P+  + N IL+   +  ++    R+
Sbjct: 140 PDQITYTTLVKACVAAGQFDRAERLLGEMEELGIPPNAYSYNCILYGLAQKLQWGKATRL 199

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    ++ N  ++   I   V+ +    A +L ++++   ++P   + N +M+GY  
Sbjct: 200 LQRMEEDGVEANLLSYSYCILACVRARRMKEASALFEEMRRKGIVPNLFVMNTMMSGYAA 259

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYV 185
           K  V  A  ++K ++   +K ++ TFS LI    N    +  ++   +++  G ++   V
Sbjct: 260 KGMVDEAQGIMKLLQDMRIKANAMTFSSLIEAFINAGYADKAVEVKRKMEELGVEVDMVV 319

Query: 186 FMALINAYTTCGEFEKA----RQVVLDAEIPVKSRS 217
              ++ AYT+ G+ E+A     ++V +A  PV SR+
Sbjct: 320 STQMLKAYTSMGKVEEAIEKLEEIVKEASSPVSSRT 355



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 70/330 (21%), Positives = 140/330 (42%), Gaps = 26/330 (7%)

Query: 111 NLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII-- 168
           +L P+   Y  ++  Y +   ++ A   L  M +    P  +  + L+  C    ++   
Sbjct: 28  SLRPSVHCYGTLIKAYGQLGQLEAAFETLNGMVKGGPAPSIRVINALLQACVRAGNLTAA 87

Query: 169 -KYYEQLKSAGG----QITKYVFMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSA 222
              +  L+ AG     Q T   F  ++NAY    + EKA +++L+      K      + 
Sbjct: 88  QTLFSSLRGAGLCISLQPTGVSFNIMVNAYARRRKVEKAFKMLLEMRRAGCKPDQITYTT 147

Query: 223 LVSALASHGRTSDAIIVYEEIKEAGCNLEPRA------VIALIEHLNSEGELNRLIQLLE 276
           LV A  + G+   A  +  E++E G  + P A      +  L + L   G+  RL+Q +E
Sbjct: 148 LVKACVAAGQFDRAERLLGEMEELG--IPPNAYSYNCILYGLAQKLQW-GKATRLLQRME 204

Query: 277 EVH-DPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIAT 335
           E   + +      C  IL CVR +++  A+ L ++++ K     + +       +     
Sbjct: 205 EDGVEANLLSYSYC--ILACVRARRMKEASALFEEMRRKGIVPNLFVMNTMMSGYAAKGM 262

Query: 336 TDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYN 395
            D  + Q  + LLQ ++    +  +      L+ A +NA    +A  + ++ E  G+  +
Sbjct: 263 VD--EAQGIMKLLQDMR----IKANAMTFSSLIEAFINAGYADKAVEVKRKMEELGVEVD 316

Query: 396 VLSYLWMYKAFLASGNRKSASKLLSKMPKD 425
           ++    M KA+ + G  + A + L ++ K+
Sbjct: 317 MVVSTQMLKAYTSMGKVEEAIEKLEEIVKE 346


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 133/303 (43%), Gaps = 19/303 (6%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           ++ I  S  ++  +I   C   K+  A + +  M    + P+  T N+I+H      +F 
Sbjct: 209 RMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQ 268

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             R I+  +    L+P+  T+ S IS   K    + A  L+  + E  L+P A  YNA++
Sbjct: 269 RARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALI 328

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQ 180
            GY  K D+  A     EM    +     T++  IH    E    D     ++++  G  
Sbjct: 329 DGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMM 388

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEI--PVKSRSEVKSALVSALASHGRTSDAII 238
                   LIN Y  CG+ ++A   +LD  +   ++      ++L+  L    R  +A  
Sbjct: 389 PDAVTHNILINGYCRCGDAKRAFG-LLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADA 447

Query: 239 VYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHD----PD-----YWMDG 287
           ++ +I++ G  L P  ++  ALI+   + G ++R  QLL+E+ +    PD       M G
Sbjct: 448 LFSKIQQEG--LLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQG 505

Query: 288 CCR 290
            CR
Sbjct: 506 YCR 508



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 93/203 (45%), Gaps = 3/203 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P + ++  LI   C       A  ++++MV   + P+  T  S+++   +        
Sbjct: 387 MMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEAD 446

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  I    L P+   F ++I  +    + D A+ LL ++  M ++P    YN +M GY
Sbjct: 447 ALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGY 506

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITK 183
            R+  V+ A  +L EM++  +KPD  +++ LI   S   D+    +  +++ + G   T 
Sbjct: 507 CREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTI 566

Query: 184 YVFMALINAYTTCGEFEKARQVV 206
             + ALI       E E A +++
Sbjct: 567 LTYNALIQGLCKNQEGEHAEELL 589



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 119/277 (42%), Gaps = 26/277 (9%)

Query: 17  LITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHN 76
           L+   C+L K + AL+    + +   VP+ ET N +L    +     +   +Y  +   N
Sbjct: 152 LVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMFRMN 211

Query: 77  LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGAL 136
           ++ +  TF  MI++  K      A   +  ++ + + P    YN I+ G+  +   Q A 
Sbjct: 212 IRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRAR 271

Query: 137 MVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYV----------F 186
           ++ + M+   ++PD  T++  I     E        +L+ A G I K +          +
Sbjct: 272 VIFQTMKDKGLEPDCYTYNSFISGLCKE-------GRLEEASGLICKMLEGGLVPNAVTY 324

Query: 187 MALINAYTTCGEFEKA---RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
            ALI+ Y   G+ +KA   R  ++   I   +     +  + AL   GR  DA  + +E+
Sbjct: 325 NALIDGYCNKGDLDKAYAYRDEMISKGI--MASLVTYNLFIHALFMEGRMGDADNMIKEM 382

Query: 244 KEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEV 278
           +E G  + P AV    LI      G+  R   LL+E+
Sbjct: 383 REKG--MMPDAVTHNILINGYCRCGDAKRAFGLLDEM 417



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 75/162 (46%), Gaps = 2/162 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           + P    +  LI   C    +  A  ++++M   +++P   T N+++   C E  +    
Sbjct: 457 LLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREG-KVEEA 515

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           R++   +    +KP+  ++ ++IS   K  D   A+ + D++      PT   YNA++ G
Sbjct: 516 RQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQG 575

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI 167
             + ++ + A  +LKEM    + PD  T+  +I      +D+
Sbjct: 576 LCKNQEGEHAEELLKEMVSKGITPDDSTYLSIIEAMETVDDL 617



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 72/354 (20%), Positives = 140/354 (39%), Gaps = 16/354 (4%)

Query: 79  PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMV 138
           PN ET   M+SL +K+     A+ L  ++  MN+  +   +N ++    ++  ++ A   
Sbjct: 179 PNIETCNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEF 238

Query: 139 LKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTT 195
           +  ME   VKP+  T++ +IH         +    ++ +K  G +   Y + + I+    
Sbjct: 239 IGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCK 298

Query: 196 CGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRA 254
            G  E+A  ++    E  +   +   +AL+    + G    A    +E+   G       
Sbjct: 299 EGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVT 358

Query: 255 VIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL---HCVRFKQLSSATDLLKQL 311
               I  L  EG +     +++E+ +     D     IL   +C R      A  LL ++
Sbjct: 359 YNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYC-RCGDAKRAFGLLDEM 417

Query: 312 KDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLL-GA 370
             K     +        +  +       D      L   I+ E GL P     + L+ G 
Sbjct: 418 VGKGIQPTLVTYTSLIYVLGKRNRMKEADA-----LFSKIQQE-GLLPDIIVFNALIDGH 471

Query: 371 CVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424
           C N  ++ RA  + KE +N  +  + ++Y  + + +   G  + A +LL +M +
Sbjct: 472 CANG-NIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKR 524



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 65/329 (19%), Positives = 143/329 (43%), Gaps = 26/329 (7%)

Query: 107 LKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED 166
           +KE   +P     N +++ + +    Q A ++  EM + N++    TF+ +I+    E  
Sbjct: 172 IKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGK 231

Query: 167 IIKYYE---QLKSAGGQITKYVFMALINAYTTCGEFEKAR---QVVLDAEIPVKSRSEVK 220
           + K  E    +++ G +     +  +I+ +   G+F++AR   Q + D  +  +      
Sbjct: 232 LKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGL--EPDCYTY 289

Query: 221 SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEV 278
           ++ +S L   GR  +A  +  ++ E G  L P AV   ALI+   ++G+L++     +E+
Sbjct: 290 NSFISGLCKEGRLEEASGLICKMLEGG--LVPNAVTYNALIDGYCNKGDLDKAYAYRDEM 347

Query: 279 HDPDYWMDGCC-RLILHCVRFK-QLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATT 336
                        L +H +  + ++  A +++K++++K    +          +C+    
Sbjct: 348 ISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCG-- 405

Query: 337 DPPDVQIGLDLLQFIKDEL---GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLP 393
              D +    LL    DE+   G+ P+      L+        +K A  ++ + +  GL 
Sbjct: 406 ---DAKRAFGLL----DEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLL 458

Query: 394 YNVLSYLWMYKAFLASGNRKSASKLLSKM 422
            +++ +  +     A+GN   A +LL +M
Sbjct: 459 PDIIVFNALIDGHCANGNIDRAFQLLKEM 487


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 151/341 (44%), Gaps = 36/341 (10%)

Query: 1   MHAKL---EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACE 57
           +HA++    ++PS  +Y  LI   C    ++ A++  +QM    L P+  T  +++    
Sbjct: 341 IHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFS 400

Query: 58  ESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTAS 117
                N   RI   +      P+  T+ + I  +  ++  + A  ++ ++ E  L P   
Sbjct: 401 RQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVV 460

Query: 118 MYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQL 174
            Y+ I++G+ RK ++  A  + +EM +  V PD+ T+S LI        + +     +++
Sbjct: 461 SYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEM 520

Query: 175 KSAGGQITKYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASH 230
              G    ++ +  LINAY   G+  KA     +++    +P    +   S L++ L   
Sbjct: 521 LDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLP---DAVTYSVLINGLNKQ 577

Query: 231 GRTSDAI---------------IVYEEIKEAGCNLEPRAVIALIEHLNSEG---ELNRLI 272
            RT +A                + Y+ + E   N+E ++V+ALI+    +G   E +R+ 
Sbjct: 578 ARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVF 637

Query: 273 Q-LLEEVHDPDYWMDGCCRLILHC-VRFKQLSSATDLLKQL 311
           + ++E  H P    +    +I+H   R   L  A +L K++
Sbjct: 638 ESMVERNHKPG---EAVYNVIIHGHCRGGNLPKAFNLYKEM 675



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/292 (21%), Positives = 131/292 (44%), Gaps = 6/292 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           + P+  SY  +I   C    +  A +++E+M      P   T N++L+  C+E   F+  
Sbjct: 280 MQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEG-NFHQA 338

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             I+  +  + + P+  T+ ++I+   K ++ + A    D ++   L P    Y  ++ G
Sbjct: 339 LVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDG 398

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH-NCSNE--EDIIKYYEQLKSAGGQIT 182
           + R+  +  A  +L EM ++   P   T++  IH +C  E  E+ +   +++   G    
Sbjct: 399 FSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPD 458

Query: 183 KYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
              +  +I+ +   GE ++A Q+  +  E  V   +   S+L+  L    R ++A  + +
Sbjct: 459 VVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQ 518

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL 293
           E+ + G   +      LI     EG+LN+ + L +E+    +  D     +L
Sbjct: 519 EMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVL 570



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 84/431 (19%), Positives = 167/431 (38%), Gaps = 63/431 (14%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A +V  +M++  + P+  T N ++       E       +  +  +   PN  T+ ++I 
Sbjct: 198 AEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLID 257

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              K+   D A+ LL  +    + P    YN I+ G  R+  ++ A  +L+EM      P
Sbjct: 258 AYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTP 317

Query: 150 DSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA 209
           D  T++                                 L+N Y   G F +A  +V+ A
Sbjct: 318 DEVTYN--------------------------------TLLNGYCKEGNFHQA--LVIHA 343

Query: 210 EI---PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
           E+    V       +AL++++      + A+  +++++  G     R    LI+  + +G
Sbjct: 344 EMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQG 403

Query: 267 ELNRLIQLLEEVHDPDY---------WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKD 317
            LN   ++L E+ +  +         ++ G      HCV  +++  A  +++++ +K   
Sbjct: 404 LLNEAYRILNEMTESGFSPSVVTYNAFIHG------HCV-LERMEEALGVVQEMVEKGLA 456

Query: 318 DEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDL 377
            ++         FC+    D    Q+  +++     E G+ P       L+      R L
Sbjct: 457 PDVVSYSTIISGFCRKGELDRA-FQMKQEMV-----EKGVSPDAVTYSSLIQGLCEMRRL 510

Query: 378 KRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQACK 437
             A  + +E  + GLP +  +Y  +  A+   G+   A  L  +M     H  F+  A  
Sbjct: 511 TEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEM----IHKGFLPDAVT 566

Query: 438 QTYTIPSLQKE 448
            +  I  L K+
Sbjct: 567 YSVLINGLNKQ 577



 Score = 39.3 bits (90), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 35/169 (20%), Positives = 71/169 (42%), Gaps = 15/169 (8%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           + + P   +Y  LI   C    ++ AL + ++M+    +P   T + +++   +      
Sbjct: 523 MGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTRE 582

Query: 65  VRRIYPMICHHNLKPNSETFRSMI---------SLNVKIKDF------DSAYSLLDDLKE 109
            +R+   + +    P+  T+ ++I         S+   IK F        A  + + + E
Sbjct: 583 AKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVE 642

Query: 110 MNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            N  P  ++YN I+ G+ R  ++  A  + KEM  +   P + T   LI
Sbjct: 643 RNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLI 691


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 118/265 (44%), Gaps = 23/265 (8%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P+  + N+I+H           RRI   +    ++P+S T+ S+IS   K    + A  L
Sbjct: 206 PNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGL 265

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---- 159
            D + E+ L+P A  YN ++ GY  K D++ A     EM +  + P   T++ L+H    
Sbjct: 266 FDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFM 325

Query: 160 --NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRS 217
                  +D+IK   +++  G       +  LIN Y+ CG  ++A    L  E+  K   
Sbjct: 326 EGRMGEADDMIK---EMRKKGIIPDAITYNILINGYSRCGNAKRAFD--LHNEMLSKGIE 380

Query: 218 EVK---SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQL 274
                 ++L+  L+   R  +A  ++E+I + G + +     A+I+   + G + R   L
Sbjct: 381 PTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFML 440

Query: 275 LEEVH----DPD-----YWMDGCCR 290
           L+E+      PD       M G CR
Sbjct: 441 LKEMDRKSVPPDEVTFNTLMQGRCR 465



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 82/190 (43%), Gaps = 3/190 (1%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  I P + +Y  LI           A D+  +M+   + P+  T  S+++         
Sbjct: 341 KKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMK 400

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               ++  I    + P+   F +MI  +    + + A+ LL ++   ++ P    +N +M
Sbjct: 401 EADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLM 460

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY---EQLKSAGGQ 180
            G  R+  V+ A M+L EM+   +KPD  +++ LI       DI   +   +++ S G  
Sbjct: 461 QGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFN 520

Query: 181 ITKYVFMALI 190
            T   + ALI
Sbjct: 521 PTLLTYNALI 530



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 68/313 (21%), Positives = 127/313 (40%), Gaps = 72/313 (23%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-------- 55
           ++ + P++ +Y  LI   C+   +  A    ++MV+  ++PS  T N ++HA        
Sbjct: 271 EIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMG 330

Query: 56  --------------CEESYEFNLVRRIYPMICH-------HN------LKPNSETFRSMI 88
                           ++  +N++   Y    +       HN      ++P   T+ S+I
Sbjct: 331 EADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLI 390

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
            +  +      A  L + + +  + P   M+NA++ G+    +V+ A M+LKEM++ +V 
Sbjct: 391 YVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVP 450

Query: 149 PDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
           PD  TF+ L+     E                                G+ E+AR ++ +
Sbjct: 451 PDEVTFNTLMQGRCRE--------------------------------GKVEEARMLLDE 478

Query: 209 AEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL--NSE 265
            +   +K      + L+S     G   DA  V +E+   G N       ALI+ L  N E
Sbjct: 479 MKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQE 538

Query: 266 GELNRLIQLLEEV 278
           G+L    +LL+E+
Sbjct: 539 GDLAE--ELLKEM 549



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 75/164 (45%), Gaps = 2/164 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           ++P    +  +I   C    V  A  ++++M +  + P   T N+++   C E  +    
Sbjct: 414 VSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREG-KVEEA 472

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           R +   +    +KP+  ++ ++IS   +  D   A+ + D++  +   PT   YNA++  
Sbjct: 473 RMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKC 532

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK 169
             + ++   A  +LKEM    + PD  T+  LI    N + +++
Sbjct: 533 LCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNVDTLVE 576


>gi|115466932|ref|NP_001057065.1| Os06g0199100 [Oryza sativa Japonica Group]
 gi|51091829|dbj|BAD36643.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113595105|dbj|BAF18979.1| Os06g0199100 [Oryza sativa Japonica Group]
          Length = 1283

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 63/298 (21%), Positives = 138/298 (46%), Gaps = 13/298 (4%)

Query: 6   EITPSSASYKKLITYSC--DLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +I P   S+  LI        L   VAL+++ ++ Q  L P   T N+++ AC +    +
Sbjct: 91  DIEPDLVSFNTLINARAKSGCLAAGVALELLHEVRQAGLRPDAITYNTLISACSQGSNLD 150

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               ++  +     +P+  T+ +M+S++ +      A  +  +L E    P A  YN+++
Sbjct: 151 DAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLL 210

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQ 180
             + ++ DV+    V +E+ +A  + D  T++ +IH       +   +  Y+++++ G  
Sbjct: 211 YAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCT 270

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
                +  L+++        +A +V+ + A+  +K      SAL+ A A  GR  DA   
Sbjct: 271 PDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERT 330

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQL----LEEVHDPDYWMDGCCRLIL 293
           ++ + E+G   +  A + +++      E  +L+ L    +++ + PD   DG  +++L
Sbjct: 331 FDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPD---DGLYQVLL 385



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/270 (21%), Positives = 122/270 (45%), Gaps = 11/270 (4%)

Query: 79  PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQG--AL 136
           P  + F +M+ +  +   FD A  LLD +++ ++ P    +N ++    +   +    AL
Sbjct: 59  PTVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVAL 118

Query: 137 MVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKYVFMALINAY 193
            +L E+ QA ++PD+ T++ LI  C   SN +D +  +E++ ++  +   + + A+++ +
Sbjct: 119 ELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVH 178

Query: 194 TTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP 252
             CG+ ++A  +  +  E   +  +   ++L+ A A  G       V EE+ +AG   + 
Sbjct: 179 GRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDG 238

Query: 253 RAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL--HCVRFKQLSSATDLLKQ 310
                +I      G L+  + L +E+       D     +L     +  ++S A  +L++
Sbjct: 239 ITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEE 298

Query: 311 LKDKFKDDEMAMEYHFSEIFCQIATTDPPD 340
           + D      +     FS + C  A +   D
Sbjct: 299 MADAGLKPTLVT---FSALICAYAKSGRQD 325



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 92/439 (20%), Positives = 181/439 (41%), Gaps = 58/439 (13%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           E  P   +Y  +++      K   A  + +++V+    P   T NS+L+A  +  +   V
Sbjct: 163 ECRPDLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERV 222

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            R+   +     + +  T+ +MI +  K+   D A  L D+++ +   P A  Y  ++  
Sbjct: 223 ERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDS 282

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQIT 182
             +   +  A  VL+EM  A +KP   TFS LI        ++D  + ++++  +G +  
Sbjct: 283 LGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPD 342

Query: 183 KYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALAS-------HG 231
           +  ++ +++ +    E  K     R ++ D   P     +V   L++ALA         G
Sbjct: 343 RLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQV---LLAALAKGNEHDEIEG 399

Query: 232 RTSD-------------AIIVYEEIKEAGCNLEPRA-----------VIALIEHLNSEGE 267
              D             +I++  E    G +L  RA           ++++++     G+
Sbjct: 400 VIQDMEAVFEMNPLVISSILIKAECISQGASLLKRACLQGYEPDGKSLLSILDAYEKMGK 459

Query: 268 LNRLIQLLEEV--HDPD-YWMDGCCRLILHCVRFK-----QLSSATDLLKQLKDKFKDDE 319
             + + LLE +  H P+ + +   C ++L C   K     Q  S   +LK  +  F  D 
Sbjct: 460 HEKGLSLLEWIRQHVPNSHNLISECSIMLLCKNGKIVDAIQEYSRKQMLK--RGSFGQDC 517

Query: 320 MAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKR 379
              EY  +  + + A   P   Q+  D+ QF    LG+ PS+K    ++  C      + 
Sbjct: 518 DLYEYLIT--YLEEAELFPEACQVFCDM-QF----LGIVPSQKIYQSIIYTCCRLGFPET 570

Query: 380 AHLIWKEYENAGLPYNVLS 398
           A+ +  +   + +  N+LS
Sbjct: 571 AYQLMDDAARSDISLNILS 589



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 88/184 (47%), Gaps = 12/184 (6%)

Query: 113 MPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH-----NCSNEEDI 167
           +PT  ++NA+M  Y R      A  +L  M   +++PD  +F+ LI+      C      
Sbjct: 58  LPTVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVA 117

Query: 168 IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVS 225
           ++   +++ AG +     +  LI+A +     + A   V +  I  + R ++ +  A+VS
Sbjct: 118 LELLHEVRQAGLRPDAITYNTLISACSQGSNLDDA-VAVFEEMIASECRPDLWTYNAMVS 176

Query: 226 ALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDY 283
                G+  +A ++++E+ E G   +P AV   +L+     EG++ R+ ++ EE+    +
Sbjct: 177 VHGRCGKAQEAELMFKELVEKG--FQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGF 234

Query: 284 WMDG 287
             DG
Sbjct: 235 RKDG 238



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 46/243 (18%), Positives = 114/243 (46%), Gaps = 12/243 (4%)

Query: 31   LDVVEQMVQGELVPSTETINSILHACEESYE----FNLVRRIYPMICHHNLKPNSETFRS 86
            ++V   +++  L P  +T N+++     ++     F L   +Y M     L P  E+++ 
Sbjct: 782  IEVYHSILEAGLEPDEDTYNTLIVMYSRNFRPEEGFTL---LYEM-GKRGLTPKLESYKI 837

Query: 87   MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
            +++ + K K ++ A  L ++++        S+Y+ +M  Y   ++   A  +L  M++  
Sbjct: 838  LLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDG 897

Query: 147  VKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203
            ++P   T   L+ +     + ++  K    LKS+  +I+   +  +++AY    ++    
Sbjct: 898  IEPTIATMHILMTSYGTSGHPDEAEKVLNSLKSSNLEISTLPYSTVLDAYLRNRDYSLGI 957

Query: 204  QVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
              +L+ +   V+   +V ++ + A +   +T DAI++ + +++ G +L  R +      L
Sbjct: 958  TKLLEMKRDGVEPDHQVWTSFIRAASLCEQTDDAILLLKSLQDCGFDLPIRLLTERTSSL 1017

Query: 263  NSE 265
             +E
Sbjct: 1018 FTE 1020



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 60/292 (20%), Positives = 114/292 (39%), Gaps = 41/292 (14%)

Query: 170 YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV--VLDAEIPVKSRSEVKSALVSAL 227
           + + LK   G + + ++ ALI+AY   G +E AR +  ++  + P+ +   V + ++ AL
Sbjct: 610 FVKGLKQESG-VDRRIWNALIHAYAESGLYEHARAIFDIMIKKGPLPTVESV-NGMMRAL 667

Query: 228 ASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDG 287
              GR  +  +V +E+++    +    V+ ++E     G++  ++++   +    Y  + 
Sbjct: 668 IVDGRLDELYVVVQELQDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNM 727

Query: 288 -----CCRLILHCVRFK----------------QLSSATDLLKQLKDKFKDDEMAMEYH- 325
                   L+ H  RF+                 L     LL         D     YH 
Sbjct: 728 HLYRIMISLLCHNKRFRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHS 787

Query: 326 ------------FSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVN 373
                       ++ +    +    P+   G  LL +   + GL P  +    LL A   
Sbjct: 788 ILEAGLEPDEDTYNTLIVMYSRNFRPEE--GFTLL-YEMGKRGLTPKLESYKILLAASGK 844

Query: 374 ARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKD 425
           A+  ++A L+++E    G   N   Y  M K +  + N   A  LLS M +D
Sbjct: 845 AKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKED 896



 Score = 38.5 bits (88), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 4/149 (2%)

Query: 33  VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92
           VV+++   ++  S  T+  +L A  ++ +   V +IY  +      PN   +R MISL  
Sbjct: 679 VVQELQDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMISLLC 738

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
             K F     ++ +++     P   + N ++  Y    +    + V   + +A ++PD  
Sbjct: 739 HNKRFRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDED 798

Query: 153 TFSYLI----HNCSNEEDIIKYYEQLKSA 177
           T++ LI     N   EE     YE  K  
Sbjct: 799 TYNTLIVMYSRNFRPEEGFTLLYEMGKRG 827


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 112/246 (45%), Gaps = 5/246 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGE-LVPSTETINSILHACEESYEFNLV 65
           + P+  +Y  L+   C   +   AL VV   ++G    P+  T N+++ A   + E +  
Sbjct: 150 VAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAA 209

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            R+  ++    ++P+  TF ++++   K    + A  + D++    L P    YN +++G
Sbjct: 210 ERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSG 269

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQIT 182
           Y +   +  AL V  EM Q  V PD  TF+ LIH      N E  +    Q++  G ++ 
Sbjct: 270 YCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMN 329

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
           ++ F ALI+ +   G  + A   + +  E  ++      + L++     GR  +A  +  
Sbjct: 330 EFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIH 389

Query: 242 EIKEAG 247
           E++  G
Sbjct: 390 EMEAKG 395



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 82/367 (22%), Positives = 146/367 (39%), Gaps = 60/367 (16%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           A+  +TP   SY  L++  C    +H AL V  +M Q  +VP   T  S++HA   +   
Sbjct: 252 AREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNL 311

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
                +   +    L+ N  TF ++I    +    D A   + +++E  + P+   YN +
Sbjct: 312 ERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVL 371

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVK---------------------------------- 148
           + GY +   +  A  ++ EME   +K                                  
Sbjct: 372 INGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGV 431

Query: 149 -PDSQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204
            PD+ T+S LI     E    D  + +E++   G Q  ++ +  LI+ +   G  +KA  
Sbjct: 432 VPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALS 491

Query: 205 VVLDAEIPVKSRSEV--KSALVSALASHGRTSDAI---------------IVYEEIKEAG 247
            + D  I      +V   S L+  L+   RT +A                I YE +    
Sbjct: 492 -LHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCC 550

Query: 248 CNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL---HCVRFKQLSSA 304
              E ++V+AL++  + +G +N+  ++ + + D  + +DG    +L   HC R   +  A
Sbjct: 551 RTAEFKSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSVYSVLIHGHC-RGGNIMKA 609

Query: 305 TDLLKQL 311
               KQL
Sbjct: 610 LSFHKQL 616



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/278 (20%), Positives = 117/278 (42%), Gaps = 20/278 (7%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M AK  + P   +Y  +++  C +     A ++  +M++  +VP   T +S++    E  
Sbjct: 391 MEAK-GMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEER 449

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
                  ++  +    L+P+  T+ ++I  + K  +   A SL D++ +  ++P    Y+
Sbjct: 450 RLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYS 509

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQ 180
            ++ G  +    + A  +L ++   +  PD+  +  L+H C   E         KS    
Sbjct: 510 VLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCRTAE--------FKSVVAL 561

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
           +  +    L+N      + +K  Q +LD     K    V S L+      G    A+  +
Sbjct: 562 LKGFSMKGLMN------QADKVYQSMLDRHW--KLDGSVYSVLIHGHCRGGNIMKALSFH 613

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEG---ELNRLIQLL 275
           +++   G +    + I+L+  L  EG   E + +IQ L
Sbjct: 614 KQLLRCGFSPNSTSTISLVRGLFEEGMTVEADNVIQEL 651


>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
          Length = 907

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 115/237 (48%), Gaps = 20/237 (8%)

Query: 29  VALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
           +A+ V  +M++  ++PST TI S+L AC E   F L   ++  I    +K +  +  S++
Sbjct: 331 MAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLV 390

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
           ++  K    + + S+ D +   +++     +NAI++G+ +   +  AL++  EM +A  +
Sbjct: 391 TMYAKCGHLEQSCSVFDRMSRRDIVS----WNAIVSGHAQNGHLCKALLLFNEMRKARQR 446

Query: 149 PDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVF-------MALINAYTTCGEFEK 201
           PDS T   L+  C++    I    Q K     +TK           AL++ Y+ CG+   
Sbjct: 447 PDSITVVSLLQACAS----IGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGS 502

Query: 202 ARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
           A++      +P +      S++++   SHG+   A+ +Y +    G  ++P  VI L
Sbjct: 503 AQKCF--DRMPQQDLVSW-SSIIAGYGSHGKGETALRMYSDFLHTG--IQPNHVIYL 554



 Score = 42.0 bits (97), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 33/180 (18%), Positives = 79/180 (43%), Gaps = 10/180 (5%)

Query: 29  VALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
           VA  +   M +  + PS+ T+  +L    E         ++  +  +    +     SM+
Sbjct: 132 VAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQC---LHACVIQYGFGSDVALANSML 188

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
           ++  K    + A +L + +   +++     +N++++GY +  +++  L +L  M+   ++
Sbjct: 189 NVYCKCGRVEDAQALFELMDARDVIS----WNSLVSGYAQLGNIREVLQLLIRMKTDGIE 244

Query: 149 PDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           PD QTF  L+   + +  +      +  +  AG +   ++  +LI  Y  CG    A ++
Sbjct: 245 PDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRI 304


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/410 (18%), Positives = 178/410 (43%), Gaps = 12/410 (2%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           +P+  +   LI   C + +V  AL  +++ +     P   T N+ +H   ++   +   +
Sbjct: 262 SPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALK 321

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +  ++      P+  T+ ++I+   K  + D A  +++ + +   +P  + +N ++    
Sbjct: 322 VMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALC 381

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKYYEQLKSAGGQITKY 184
            +  ++ AL + +E+    + PD  TF+ LI+      D    I+ +E++KS+G    + 
Sbjct: 382 SQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEV 441

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEI 243
            +  LI+   + G+   A  ++ + E     RS V  + ++ AL    R  +A  V++++
Sbjct: 442 TYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQM 501

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQL 301
              G +        LI+ L     ++   +L+E++              ++ H  +   L
Sbjct: 502 DAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDL 561

Query: 302 SSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSR 361
             A D+L+ +     + ++          C+   T     Q+ L LL+ ++ + G+ P+ 
Sbjct: 562 KKAADILETMTANGFEIDVVTYGTLINGLCKAGRT-----QVALKLLRGMRIK-GIRPTP 615

Query: 362 KCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGN 411
           K  + ++ +     +L+ A  +++E    G P + L+Y  +++     G 
Sbjct: 616 KAYNPVIQSLFRRNNLRDALSLFREMTEVGEPPDALTYKIVFRGLCRGGG 665



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 94/463 (20%), Positives = 184/463 (39%), Gaps = 59/463 (12%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           +   +A Y  L+    +  ++ +   V  +M    + P   T+N+++ A   +++     
Sbjct: 156 VQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAV 215

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +  H + P+  TF +++   ++    ++A  +   + E    PT    N ++ GY
Sbjct: 216 LMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGY 275

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITK 183
            +   V+ AL  +++      +PD  T++  +H  C N      +K  + +   G     
Sbjct: 276 CKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDV 335

Query: 184 YVFMALINAYTTCGEFEKARQVV---------------------------------LDAE 210
           + +  +IN  +  GE ++A+ +V                                 L  E
Sbjct: 336 FTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARE 395

Query: 211 IPVKSRSE---VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
           + VK  S      + L++AL   G     I ++EE+K +GC  +      LI+HL S G+
Sbjct: 396 LTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGK 455

Query: 268 LNRLIQLLEEVHDPDYWMDGCCR-------LILHCVRFKQLSSATDLLKQLKDKFKDDEM 320
           L   + LL+E+       +GC R       +I    +  ++  A ++  Q+ D       
Sbjct: 456 LVNALDLLKEMES-----NGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQM-DAHGISRS 509

Query: 321 AMEYH-FSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKR 379
           A+ ++   +  C+    D     I     Q +K+  GL PS    + +L       DLK+
Sbjct: 510 AVTFNTLIDGLCKAKRIDDATELIE----QMVKE--GLQPSNITYNSILTHYCKQGDLKK 563

Query: 380 AHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           A  I +     G   +V++Y  +      +G  + A KLL  M
Sbjct: 564 AADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGM 606



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 84/433 (19%), Positives = 159/433 (36%), Gaps = 66/433 (15%)

Query: 41  ELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSA 100
           +  PS      I+     +  F+L+  +   +     +  +   RS +    +++ FD A
Sbjct: 84  DFAPSRAVYEEIIQKLGTAGAFDLMEGLVREMRREGHEAGAGVVRSFVESYARLRRFDDA 143

Query: 101 YSLL------------------------------------DDLKEMNLMPTASMYNAIMA 124
             L+                                    +++ +  + P     N ++ 
Sbjct: 144 VDLVRNQLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIK 203

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQI 181
              R   V+ A+++L+EM    V PD  TF+ L+     E  I   ++   ++   G   
Sbjct: 204 ALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSP 263

Query: 182 TKYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAI 237
           T+     LIN Y   G  E A    ++ + D   P +      +  V  L  +G  S A+
Sbjct: 264 TRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQV---TYNTFVHCLCQNGHVSHAL 320

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHC 295
            V + + + G + +      +I  L+  GEL+    ++ ++ D     D      LI+  
Sbjct: 321 KVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVAL 380

Query: 296 VRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDEL 355
               +L  A DL ++L  K    ++          C++   DP    +G+ L + +K   
Sbjct: 381 CSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVG--DP---HLGIRLFEEMKSS- 434

Query: 356 GLPPSRKCLDFL------LGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLAS 409
           G  P     + L      +G  VNA DL       KE E+ G P + ++Y  +  A    
Sbjct: 435 GCAPDEVTYNILIDHLCSMGKLVNALDL------LKEMESNGCPRSTVTYNTIIDALCKQ 488

Query: 410 GNRKSASKLLSKM 422
              + A ++  +M
Sbjct: 489 MRIEEAEEVFDQM 501


>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
          Length = 632

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 134/294 (45%), Gaps = 12/294 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY-PMICHHNLKPNSETFRSMI 88
           A+ +  Q+   +  P+ +  NS++       ++  V  +Y  M    + +P++ T+ ++I
Sbjct: 178 AITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCQPDTVTYSALI 237

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
           S   K+   DSA  LL+++KE  + PTA +Y  I++ +F+  +V GAL + +EM     +
Sbjct: 238 SAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCR 297

Query: 149 PDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           PD  T++ LI        I     +Y +++  G +    V   +IN     G  +   ++
Sbjct: 298 PDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKL 357

Query: 206 VLDAEIP--VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
             +  +   + +     + + +   S  R S+    +E +K +G +  P     LI+   
Sbjct: 358 FEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFC 417

Query: 264 SEGELNRLIQLLEEVHDPDYWMDGC----CRLILHCVRFKQLSSATDLLKQLKD 313
               + + + LLEE+ +  +    C    C LI    + K+   A +L ++LK+
Sbjct: 418 KTNRIEKAMMLLEEMDEKGF--PPCPAAYCSLIDALGKAKRYDLACELFQELKE 469



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 106/261 (40%), Gaps = 5/261 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P++  Y  +I+    L  VH AL + E+M      P   T   ++    ++   +   
Sbjct: 261 MQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAY 320

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
             Y  +     KP++    +MI+   K    D    L +++   + +P    YN I+   
Sbjct: 321 HFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKAL 380

Query: 127 FRKKD-VQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQIT 182
           F  K  V       + M+ + + P   T+S LI   C     E  +   E++   G    
Sbjct: 381 FESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPC 440

Query: 183 KYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
              + +LI+A      ++ A ++  +  E    S + V + ++  L   GR  DAI +++
Sbjct: 441 PAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFD 500

Query: 242 EIKEAGCNLEPRAVIALIEHL 262
           E+ + GC     A  AL+  L
Sbjct: 501 EMSKLGCTPNVYAYNALMSGL 521



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/203 (20%), Positives = 94/203 (46%), Gaps = 3/203 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I+PS  +Y  LI   C   ++  A+ ++E+M +    P      S++ A  ++  ++L  
Sbjct: 402 ISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLAC 461

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +  +    ++  +  MI    K    D A +L D++ ++   P    YNA+M+G 
Sbjct: 462 ELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGL 521

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK--- 183
            R   +  AL  +++M++    PD  +++ +++  +      +  E L +      K   
Sbjct: 522 ARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDA 581

Query: 184 YVFMALINAYTTCGEFEKARQVV 206
             +  +++A +  G FE+A +++
Sbjct: 582 VSYNTVLSALSHAGMFEEAAELM 604


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 91/432 (21%), Positives = 181/432 (41%), Gaps = 29/432 (6%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           L   P+S ++  LI   C    +  AL+++++M +  LVPS  +  ++++      + +L
Sbjct: 397 LGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSL 456

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
             ++   +    LKPN   +  +I         + A  LLD +    + P    YNAI++
Sbjct: 457 ANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIIS 516

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQI 181
              +   ++ A   L E++   +KPD+ TF   I   S    +    KY++++   G   
Sbjct: 517 CLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMP 576

Query: 182 TKYVFMALINAYTTCGEFEKARQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
              ++  LIN +   G   +A  +   L A + V    +  SA +  L  +GR  +A+ V
Sbjct: 577 NNPLYTVLINGHFKAGNLMEALSIFRRLHA-LGVLPDVQTCSAFIHGLLKNGRVQEALKV 635

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDYWM-----DGCCR 290
           + E+KE G   +     +LI     +GE+ +  +L +E+      P+ ++     DG C 
Sbjct: 636 FSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLC- 694

Query: 291 LILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQF 350
                 +   +  A  L   + +K  + +        + +C+       +V     L   
Sbjct: 695 ------KSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCK-----SENVAEAFSLFHE 743

Query: 351 IKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASG 410
           +  + G+ P     + L+  C    D+++A  +++E    G     LS+  +   +  S 
Sbjct: 744 MPSK-GVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFA-TTLSFNTLIDGYCKSC 801

Query: 411 NRKSASKLLSKM 422
             + AS+L  +M
Sbjct: 802 KIQEASQLFQEM 813



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 87/401 (21%), Positives = 171/401 (42%), Gaps = 25/401 (6%)

Query: 48  TINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL 107
           T N ++H   +  +      I   +     KPNS TF  +I    +  +   A  LLD++
Sbjct: 370 TYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEM 429

Query: 108 KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE--- 164
           ++ NL+P+A  Y A++ G    KD+  A  +L++M  + +KP+   +S LI   ++E   
Sbjct: 430 EKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRI 489

Query: 165 EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSAL 223
           E+  +  + +  +G     + + A+I+  +  G+ E+A   +L+ +   +K  +    A 
Sbjct: 490 EEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAF 549

Query: 224 VSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD--- 280
           +   +  G+ ++A   ++E+ + G          LI      G L   + +   +H    
Sbjct: 550 ILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGV 609

Query: 281 -PDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPP 339
            PD  +  C   I   ++  ++  A  +  +LK+K    ++         FC+       
Sbjct: 610 LPD--VQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCK-----QG 662

Query: 340 DVQIGLDLLQFIKDEL---GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNV 396
           +V+   +L     DE+   G+ P+    + L+     + D++RA  ++      GL  + 
Sbjct: 663 EVEKAFEL----HDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDS 718

Query: 397 LSYLWMYKAFLASGNRKSASKLLSKMPKDD--PHVRFVIQA 435
           ++Y  M   +  S N   A  L  +MP     PH  FV  A
Sbjct: 719 VTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPH-SFVYNA 758



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 116/260 (44%), Gaps = 11/260 (4%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           +V  AL V  ++ +  LVP   T +S++    +  E      ++  +C   + PN   + 
Sbjct: 628 RVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYN 687

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           +++    K  D   A  L D + E  L P +  Y+ ++ GY + ++V  A  +  EM   
Sbjct: 688 ALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSK 747

Query: 146 NVKPDSQTFSYLIHNCSNEEDIIK----YYEQLKSAGGQITKYVFMALINAYTTCGEFEK 201
            V+P S  ++ L+H C  E D+ K    + E L+   G  T   F  LI+ Y    + ++
Sbjct: 748 GVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQK--GFATTLSFNTLIDGYCKSCKIQE 805

Query: 202 ARQVVLDAEIPVKSRSEVKSALVSALASH---GRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
           A Q  L  E+  K          + +  H   G+  +A ++++E++E    ++     +L
Sbjct: 806 ASQ--LFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSL 863

Query: 259 IEHLNSEGELNRLIQLLEEV 278
           +   N  G+ + +  L E++
Sbjct: 864 MYGYNKLGQSSEVFALFEKM 883



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 120/293 (40%), Gaps = 45/293 (15%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  + PS+ SY  +I   C    + +A  ++E+M    L P+    + ++ A        
Sbjct: 431 KRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIE 490

Query: 64  LVRRIY----------PMICHH-------------------------NLKPNSETFRSMI 88
             RR+            + C++                          LKP++ TF + I
Sbjct: 491 EARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFI 550

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
               K      A    D++ +  LMP   +Y  ++ G+F+  ++  AL + + +    V 
Sbjct: 551 LGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVL 610

Query: 149 PDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           PD QT S  IH        ++ +K + +LK  G     + + +LI+ +   GE EKA + 
Sbjct: 611 PDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFE- 669

Query: 206 VLDAEIPVKSRSE---VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255
            L  E+ +K  +    + +ALV  L   G    A  +++ + E G  LEP +V
Sbjct: 670 -LHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKG--LEPDSV 719



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 115/301 (38%), Gaps = 50/301 (16%)

Query: 23  DLLK---VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKP 79
           DLLK   + +   V   M+  ++     T   ++ A  ++ +    +R+   +    L P
Sbjct: 202 DLLKCGMMELFWKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNP 261

Query: 80  NSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVL 139
           N   +  +I    ++ D D A  L   + E  L+P    Y  I AG  R K +  A +  
Sbjct: 262 NEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTF 321

Query: 140 KEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEF 199
           +EM++  +KPD    S LI     E DI                              E 
Sbjct: 322 EEMQKTGLKPDYNACSALIDGFMREGDI-----------------------------DEV 352

Query: 200 EKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALI 259
            + + V++   IP+   +   + L+  L   G+   A  + + +   GC    R    LI
Sbjct: 353 LRIKDVMVSCGIPINLIT--YNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLI 410

Query: 260 EHLNSEGELNRLIQLLEEVHDPDY---------WMDGCCRLILHCVRFKQLSSATDLLKQ 310
           E    E  + R ++LL+E+   +           ++G C    HC   K LS A  LL++
Sbjct: 411 EGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLC----HC---KDLSLANKLLEK 463

Query: 311 L 311
           +
Sbjct: 464 M 464



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/429 (19%), Positives = 171/429 (39%), Gaps = 26/429 (6%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+   Y  +I   C +  +  A+++   M +  LVP+T T   I      +   N  +
Sbjct: 259 LNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAK 318

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
             +  +    LKP+     ++I   ++  D D    + D +    +      YN ++ G 
Sbjct: 319 LTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGL 378

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITK 183
            +   ++ A  +LK M     KP+S+TF  LI     E ++   ++  ++++      + 
Sbjct: 379 CKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSA 438

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             + A+IN    C +   A +++       +K    V S L+ A AS GR  +A  + + 
Sbjct: 439 VSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDG 498

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYWMDGCCRLILHCVRF 298
           +  +G   +     A+I  L+  G++      L E+      PD    G    IL   + 
Sbjct: 499 MSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGA--FILGYSKT 556

Query: 299 KQLSSATDLLKQLKDK--FKDDEM---AMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKD 353
            +++ A     ++ D     ++ +    +  HF             ++   L + + +  
Sbjct: 557 GKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFK----------AGNLMEALSIFRRLHA 606

Query: 354 ELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRK 413
              LP  + C  F+ G   N R ++ A  ++ E +  GL  +V +Y  +   F   G  +
Sbjct: 607 LGVLPDVQTCSAFIHGLLKNGR-VQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVE 665

Query: 414 SASKLLSKM 422
            A +L  +M
Sbjct: 666 KAFELHDEM 674


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 96/458 (20%), Positives = 180/458 (39%), Gaps = 49/458 (10%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I+ ++ SY  +I   C L KV  A  ++ QM      P   + ++++       E     
Sbjct: 254 ISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKAL 313

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           ++   +    LKPN  T+ S+I L  KI     A  +L ++    ++P   +Y  ++ G+
Sbjct: 314 KLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGF 373

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITK 183
           F+   V+ A     EM    + PD  T++ LI        +I+    + ++ S G +  +
Sbjct: 374 FKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDE 433

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             +  LI+ Y   GE   A  +  +  ++ +        AL+  L  HG    A  + +E
Sbjct: 434 VTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDE 493

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPD-----YWMDGCCRLIL 293
           +++ G  L      +++  +   G + + I+L++E+     DPD       +D  CRL  
Sbjct: 494 MRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRL-- 551

Query: 294 HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGL-------- 345
                  +  A  LL+++ D+     +         FC +   +  D  +G         
Sbjct: 552 -----GDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVP 606

Query: 346 DLLQF--------IKDEL-------------GLPPSRKCLDFLLGACVNARDLKRAHLIW 384
           D + +        I++ +             G+ P     + L+     AR+LK A  ++
Sbjct: 607 DAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLY 666

Query: 385 KEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           KE    G    V SY  + K F        A +L  +M
Sbjct: 667 KEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEM 704



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 97/204 (47%), Gaps = 3/204 (1%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +I+P   +Y  LI       KV    ++  +M+   L P   T  +++    ++ E    
Sbjct: 393 KISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNA 452

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             ++  +    + PN  T+ ++I    K  + D+A  LLD++++  L     +YN+++ G
Sbjct: 453 FSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNG 512

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA---GGQIT 182
             +  +++ A+ ++KEME A + PD+ T++ +I       DI K ++ L+     G Q T
Sbjct: 513 ICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPT 572

Query: 183 KYVFMALINAYTTCGEFEKARQVV 206
              F  L+N +   G  E   +++
Sbjct: 573 VVTFNVLMNGFCMLGMLEDGDRLL 596



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 80/163 (49%), Gaps = 4/163 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSIL--HACEESYEFNL 64
           + P+  ++  L+   C L  +     ++  M++  +VP   T N+++  H    S   N 
Sbjct: 569 LQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNS--MNT 626

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
             +IY  + +  + P+S T+  +I  + K ++   A+ L  ++ E   +PT + YNA++ 
Sbjct: 627 TTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIK 686

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI 167
            +++KK +  A  + +EM    +  D + +++ +  C  E D+
Sbjct: 687 RFYKKKKILEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDV 729



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/204 (20%), Positives = 97/204 (47%), Gaps = 3/204 (1%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +I P +  Y  LI     L  V  A    ++M+  ++ P   T  +++    +  +    
Sbjct: 358 KIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEP 417

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           + ++  +    LKP+  T+ ++I +  K  +  +A+SL +++ +M + P    Y A++ G
Sbjct: 418 QNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDG 477

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQIT 182
             +  ++  A  +L EM +  ++ +   ++ +++      N E  IK  ++++ AG    
Sbjct: 478 LCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPD 537

Query: 183 KYVFMALINAYTTCGEFEKARQVV 206
              +  +I+AY   G+ +KA +++
Sbjct: 538 AITYTTVIDAYCRLGDIDKAHKLL 561



 Score = 45.8 bits (107), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 29/175 (16%), Positives = 81/175 (46%), Gaps = 3/175 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P + +Y  +I   C L  +  A  ++++M+   L P+  T N +++            
Sbjct: 534 IDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGD 593

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R+   +    + P++ T+ +++  +      ++   +   ++   + P ++ YN ++ G+
Sbjct: 594 RLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGH 653

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAG 178
            + ++++ A  + KEM +    P   +++ LI     ++ I+   + +E+++  G
Sbjct: 654 CKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHG 708



 Score = 45.1 bits (105), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 68/407 (16%), Positives = 163/407 (40%), Gaps = 30/407 (7%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A  ++++++   LV + ++ N+ L     + E   +     + C + +  N+ ++  +I 
Sbjct: 209 ARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEG--IEMAIKVFCEYGISWNTTSYNIIIY 266

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              ++     A+ LL  +   +  P    Y+ ++ GY    +++ AL ++ +M+   +KP
Sbjct: 267 SLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKP 326

Query: 150 DSQTFS---YLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           +  T++    L+       +  K   ++ S        V+  LI+ +   G    A +  
Sbjct: 327 NRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANK-W 385

Query: 207 LDAEIPVKSRSE--VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
            D  +  K   +    + L+      G+  +   ++ E+   G   +      LI+    
Sbjct: 386 FDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCK 445

Query: 265 EGEL-------NRLIQLLEEVHDPDY--WMDGCCRLILHCVRFKQLSSATDLLKQLKDKF 315
            GE+       N ++Q+    +   Y   +DG C       +  +L +A +LL +++ K 
Sbjct: 446 AGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLC-------KHGELDTANELLDEMRKKG 498

Query: 316 KDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNAR 375
               + +        C+       +++  + L++ + +  G+ P       ++ A     
Sbjct: 499 LQLNVCIYNSMVNGICKAG-----NIEQAIKLMKEM-EVAGIDPDAITYTTVIDAYCRLG 552

Query: 376 DLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           D+ +AH + +E  + GL   V+++  +   F   G  +   +LL  M
Sbjct: 553 DIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWM 599


>gi|357134934|ref|XP_003569069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Brachypodium distachyon]
          Length = 642

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 120/283 (42%), Gaps = 16/283 (5%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           E+TP  ASY  ++   C   ++     VV++MV   L P T    SI+ A  ++ E  + 
Sbjct: 222 EMTPVGASYNAVVHALCGQFRMREVFLVVDEMVHRGLRPDTVAYTSIVGAFCKARELRMA 281

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLM------PTASMY 119
             I   +      PN +TF       V +K F     + D L   N M      P+   Y
Sbjct: 282 CAILARMVTEGCVPNVQTF------TVLVKGFFDDGKVHDALGMWNWMVAEGWAPSTISY 335

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKS 176
           N ++ G     D++ AL V   M +++  PD +T+S LI   S   D+   +  +  + +
Sbjct: 336 NVLIRGLCHIGDLKRALFVFSCMGKSDCLPDVRTYSTLIDGFSKAGDLDVAMSIWNDMTN 395

Query: 177 AGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSD 235
           AG +    V+  +++       F++A  ++    +      +   + L+ +L   GR   
Sbjct: 396 AGCKPNVVVYTNMVDVLCKKVMFDQAENLIDKMSLENCPPNTLTFNTLIRSLCDLGRAGR 455

Query: 236 AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           A+ V+  ++  GC    R    L+  L  EG     +++L E+
Sbjct: 456 ALNVFHGMRRYGCPPNDRTYNELLHGLFREGNCEDALRMLTEM 498



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/317 (20%), Positives = 131/317 (41%), Gaps = 49/317 (15%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
            PS+ SY  LI   C +  +  AL V   M + + +P   T ++++    ++ + ++   
Sbjct: 329 APSTISYNVLIRGLCHIGDLKRALFVFSCMGKSDCLPDVRTYSTLIDGFSKAGDLDVAMS 388

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           I+  + +   KPN   + +M+ +  K   FD A +L+D +   N  P    +N ++    
Sbjct: 389 IWNDMTNAGCKPNVVVYTNMVDVLCKKVMFDQAENLIDKMSLENCPPNTLTFNTLIRSLC 448

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQIT-- 182
                  AL V   M +    P+ +T++ L+H      N ED ++   ++ + G +++  
Sbjct: 449 DLGRAGRALNVFHGMRRYGCPPNDRTYNELLHGLFREGNCEDALRMLTEMLNHGFELSLV 508

Query: 183 ---------------------------------KYVFMALINAYTTCGEFEKARQVVLDA 209
                                             + F A+I+AY   G    A  ++   
Sbjct: 509 SYNTTISGLCQMRMIKEAMILLGRMIIQGIQPDAFTFNAIIHAYCKEGNVRAAAWMLGRM 568

Query: 210 EIPVKSRSEVK-SALVSALASHGRTSDAII-----VYEEI--KEAGCNLEPRAVIALIEH 261
           +     R+ V  ++L+S L S  +  DA++     +YE I   EA  N+  R +     H
Sbjct: 569 DAVNCPRNIVAYTSLMSGLCSQHKLDDAMVYLLKMLYEGICPNEATWNVLVRGIFT---H 625

Query: 262 LNSEGELNRLIQLLEEV 278
           L + G ++ +  ++E++
Sbjct: 626 LGTIGPMHLIDHIIEDL 642


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 100/441 (22%), Positives = 179/441 (40%), Gaps = 47/441 (10%)

Query: 22  CDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN-LVRRIYPMICHHNLKPN 80
           C+   +H AL+++E+M      P   T   I+ A   + + +  +  +  M C     PN
Sbjct: 1   CNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCD----PN 56

Query: 81  SETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLK 140
             T+ ++I+   + K  + A  LL++++E    P    YN ++    +   V  A  V+K
Sbjct: 57  VVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVK 116

Query: 141 EMEQANVKPDSQTFSYLIHN-C--SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCG 197
           +M +    P+  TF+ L+   C   N +D  K    + + G +     + ALI+      
Sbjct: 117 KMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQ 176

Query: 198 EFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI 256
           +F +A++V+ + +   V   +   SAL+  L    +  +A  +   +  +GC  +     
Sbjct: 177 KFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYS 236

Query: 257 ALIEHLNSEGELNRLIQLLEEVH----DPDY-----WMDGCCRL--ILHC-VRFKQLSSA 304
           ++I      G+L    + L+E+      PD       +DG C+L  I    V   Q+  +
Sbjct: 237 SIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQES 296

Query: 305 TDLLKQ-------LKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQI------GLD----- 346
            D+L         +    K D +       +  C+      PDV        GL      
Sbjct: 297 GDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCN--PDVVTYTTIIDGLCKCGRL 354

Query: 347 -----LLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLW 401
                LLQ +K   G  P+      L+     AR +  A  + +E  NAG P N+++Y  
Sbjct: 355 EEAEYLLQGMK-RAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNT 413

Query: 402 MYKAFLASGNRKSASKLLSKM 422
           M      SG  K A +L+ +M
Sbjct: 414 MVNGLCVSGRIKEAQQLVQRM 434



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 126/277 (45%), Gaps = 13/277 (4%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  L+   C L  V  A DVV++M++G   P+  T NS++    +    +  R++
Sbjct: 90  PNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKL 149

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
             ++    ++PN  T+ ++I    K + F  A  +L+++K   + P A  Y+A++ G  +
Sbjct: 150 LGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCK 209

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK---YV 185
              ++ A  +L+ M  +   PD   +S +IH       +++  + L+    Q        
Sbjct: 210 ADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVT 269

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEV------KSALVSALASHGRTSDAIIV 239
           +  +I+     G+  +A QV+LD    ++   +V       S +++ L       +A  +
Sbjct: 270 YNTVIDGLCKLGKIAEA-QVILDQ---MQESGDVLPDVVTYSTVINGLCKSDMLVEAQKL 325

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276
            + + +AGCN +      +I+ L   G L     LL+
Sbjct: 326 LDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQ 362



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/277 (20%), Positives = 118/277 (42%), Gaps = 5/277 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  LI   C   K   A +V+E+M    + P   T ++++H   ++ +     ++
Sbjct: 160 PNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQM 219

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +      P+   + S+I    K      A   L ++++    P    YN ++ G  +
Sbjct: 220 LRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCK 279

Query: 129 KKDVQGALMVLKEM-EQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKY 184
              +  A ++L +M E  +V PD  T+S +I+     + ++   K  +++  AG      
Sbjct: 280 LGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVV 339

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEI 243
            +  +I+    CG  E+A  ++   +    + + V  + L+S L    +  +A  V EE+
Sbjct: 340 TYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEM 399

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           + AGC         ++  L   G +    QL++ + D
Sbjct: 400 RNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKD 436


>gi|356520989|ref|XP_003529141.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Glycine max]
          Length = 682

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 119/262 (45%), Gaps = 11/262 (4%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + PS  SY  +I+  C   +    L++ E+M + E      T ++++H   E+ +    R
Sbjct: 250 VFPSVVSYNVMISGLCKCGRFSEGLEIWERMKKNERKCDLFTYSALIHGLSEAGDLGGAR 309

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           ++Y  +    ++P+  T  +M++   K  + +  + L +++ + +L    S YN  + G 
Sbjct: 310 KVYEEMVGRGVRPDVVTCNAMLNGLCKAGNVEECFELWEEMGKCSLRNVRS-YNIFLKGL 368

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA-----GGQI 181
           F    V  A+M+   + +A    DS T+  ++H       + +  + L+ A     G  +
Sbjct: 369 FENGKVDDAMMLWDGLLEA----DSATYGVVVHGLCWNGYVNRALQVLEEAEHREGGMDV 424

Query: 182 TKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
            ++ + +LINA    G  ++A  VV L  +   K  S V + L+     H +   A+ V+
Sbjct: 425 DEFAYSSLINALCKEGRLDEADGVVELMNKRGCKFNSHVCNVLIDGFVKHSKLDSAVKVF 484

Query: 241 EEIKEAGCNLEPRAVIALIEHL 262
            E+   GC+L   +   LI  L
Sbjct: 485 REMSGKGCSLTVVSYNILINGL 506



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 117/291 (40%), Gaps = 30/291 (10%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P+  + N++L+A  ES+++      +       + PN ET+  ++ +  K  +F+    L
Sbjct: 111 PTIRSFNTLLNAFVESHQWARAENFFKYFEAARVSPNVETYNVLMKVMCKKGEFEKGRGL 170

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163
           L  +    + P    Y  ++ G  +  D+  AL V  EM +  V+PD   ++ +I     
Sbjct: 171 LTWMWGAGMSPDRITYGTLIGGVAKSGDLGFALEVFDEMRERGVEPDVVCYNMIIDGFFK 230

Query: 164 EEDIIK---YYEQLKSAGGQITKYV-FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEV 219
             D +K    +E+L          V +  +I+    CG F +  ++          ++E 
Sbjct: 231 RGDFVKAGEMWERLLREELVFPSVVSYNVMISGLCKCGRFSEGLEI-----WERMKKNER 285

Query: 220 K------SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQ 273
           K      SAL+  L+  G    A  VYEE+   G   +     A++  L   G +    +
Sbjct: 286 KCDLFTYSALIHGLSEAGDLGGARKVYEEMVGRGVRPDVVTCNAMLNGLCKAGNVEECFE 345

Query: 274 LLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEY 324
           L EE+        G C L       + + S    LK L +  K D+  M +
Sbjct: 346 LWEEM--------GKCSL-------RNVRSYNIFLKGLFENGKVDDAMMLW 381



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 129/321 (40%), Gaps = 49/321 (15%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           +P+  S+  L+    +  +   A +  +      + P+ ET N ++    +  EF   R 
Sbjct: 110 SPTIRSFNTLLNAFVESHQWARAENFFKYFEAARVSPNVETYNVLMKVMCKKGEFEKGRG 169

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +   +    + P+  T+ ++I    K  D   A  + D+++E  + P    YN I+ G+F
Sbjct: 170 LLTWMWGAGMSPDRITYGTLIGGVAKSGDLGFALEVFDEMRERGVEPDVVCYNMIIDGFF 229

Query: 128 RKKD---------------------------VQG---------ALMVLKEMEQANVKPDS 151
           ++ D                           + G          L + + M++   K D 
Sbjct: 230 KRGDFVKAGEMWERLLREELVFPSVVSYNVMISGLCKCGRFSEGLEIWERMKKNERKCDL 289

Query: 152 QTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
            T+S LIH  S   D+    K YE++   G +       A++N     G  E+  +  L 
Sbjct: 290 FTYSALIHGLSEAGDLGGARKVYEEMVGRGVRPDVVTCNAMLNGLCKAGNVEECFE--LW 347

Query: 209 AEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEH-LNSE 265
            E+   S   V+S    +  L  +G+  DA+++++ + EA       A   ++ H L   
Sbjct: 348 EEMGKCSLRNVRSYNIFLKGLFENGKVDDAMMLWDGLLEA-----DSATYGVVVHGLCWN 402

Query: 266 GELNRLIQLLEEVHDPDYWMD 286
           G +NR +Q+LEE    +  MD
Sbjct: 403 GYVNRALQVLEEAEHREGGMD 423



 Score = 41.6 bits (96), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 85/200 (42%), Gaps = 5/200 (2%)

Query: 11  SASYKKLITYSCDLLKVHVALDVVEQM--VQGELVPSTETINSILHACEESYEFNLVRRI 68
           SA+Y  ++   C    V+ AL V+E+    +G +       +S+++A  +    +    +
Sbjct: 389 SATYGVVVHGLCWNGYVNRALQVLEEAEHREGGMDVDEFAYSSLINALCKEGRLDEADGV 448

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
             ++     K NS     +I   VK    DSA  +  ++       T   YN ++ G  R
Sbjct: 449 VELMNKRGCKFNSHVCNVLIDGFVKHSKLDSAVKVFREMSGKGCSLTVVSYNILINGLLR 508

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC--SNEED-IIKYYEQLKSAGGQITKYV 185
            +  + A   + EM +   KPD  T+S LI     SN  D  ++ + Q    G +    +
Sbjct: 509 AERFREAYDCVNEMLEKGWKPDIITYSTLIGGLYESNMMDAALRLWHQFLDTGHKPDIIM 568

Query: 186 FMALINAYTTCGEFEKARQV 205
           +  +I+   + G+ E A Q+
Sbjct: 569 YNIVIHRLCSSGKVEDALQL 588


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 89/458 (19%), Positives = 168/458 (36%), Gaps = 78/458 (17%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K +  P+S++Y  +I   C   KV  A  + ++M    L P+  T+N ++    ++ +F 
Sbjct: 384 KKDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFE 443

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL---------------- 107
               ++         PNS T+ S+I    K  + D AY L +++                
Sbjct: 444 PAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLI 503

Query: 108 ----------------KEMN---LMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
                           KEMN     P  ++ N  M   F+  DV+    + ++++     
Sbjct: 504 RNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFL 563

Query: 149 PDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           PD +++S LIH         +    +  +K  G  +    + A+++ +   G+ +KA +V
Sbjct: 564 PDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEV 623

Query: 206 VLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
           + + ++  V        +++  LA   R  +A +++EE K  G  L      +LI+    
Sbjct: 624 LEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGK 683

Query: 265 EGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEY 324
            G ++    +LEE+                    K L+        L D     E     
Sbjct: 684 VGRIDEAYLILEEMMK------------------KGLTPNVYTWNSLMDALVKAE----- 720

Query: 325 HFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIW 384
                          ++   L   Q +K E+   P+      L+      +   +A + W
Sbjct: 721 ---------------EINEALICFQSMK-EMKCSPNTYTYSILINGLCRVQKYNKAFVFW 764

Query: 385 KEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           +E +  GL  NV++Y  M       GN   A  L  + 
Sbjct: 765 QEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERF 802



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/261 (20%), Positives = 118/261 (45%), Gaps = 16/261 (6%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  ++   C   K+  A +V+E+M    + P+  T  SI+    +    +    ++   
Sbjct: 603 AYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEA 662

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               ++ N   + S+I    K+   D AY +L+++ +  L P    +N++M    + +++
Sbjct: 663 KSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEI 722

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAG--GQITKYVFM 187
             AL+  + M++    P++ T+S LI+     +   K   ++++++  G    +  Y  M
Sbjct: 723 NEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTM 782

Query: 188 -----ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
                 + N    C  FE+ +    +   P  +     +AL+  ++   R  +A  V+EE
Sbjct: 783 IAGLAKVGNITDACSLFERFKA---NGGTPDAASF---NALIEGMSHANRAIEAYHVFEE 836

Query: 243 IKEAGCNLEPRAVIALIEHLN 263
            +  GC +  +A I+L++ LN
Sbjct: 837 TRLKGCRINVKACISLLDALN 857



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 81/425 (19%), Positives = 174/425 (40%), Gaps = 15/425 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   SY  +I   C   ++  A ++  QM     VP     N+++     + +F    
Sbjct: 283 LKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAGQFENAY 342

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           ++   +      P+  +F S+++   K +  D A +L + +K+ +  P +S YN I+   
Sbjct: 343 KLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKK-DAEPNSSTYNIIIDML 401

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA---GGQITK 183
                V+ A M+  EME A + P+  T + ++      +     YE  ++A   G     
Sbjct: 402 CMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNS 461

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             + +LI+     G  + A ++  +  +    +   V ++L+     HGR  D   +++E
Sbjct: 462 VTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKE 521

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD--GCCRLILHCVRFKQ 300
           +   GC  +   +   ++ +   G++ +   + E++    +  D      LI    +  Q
Sbjct: 522 MNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQ 581

Query: 301 LSSATDLLKQLKDK-FKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPP 359
               + +   +K + F  D  A      + FC+    D        ++L+ +K +  +PP
Sbjct: 582 ARETSSIFHAMKQQGFALDARAYN-AVVDGFCKSGKLDK-----AYEVLEEMKVKR-VPP 634

Query: 360 SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLL 419
           +      ++        L  A+++++E ++ G+  NV+ Y  +   F   G    A  +L
Sbjct: 635 TVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLIL 694

Query: 420 SKMPK 424
            +M K
Sbjct: 695 EEMMK 699



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 96/200 (48%), Gaps = 13/200 (6%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y  LI     + ++  A  ++E+M++  L P+  T NS++ A  ++ E N       +IC
Sbjct: 674 YSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEIN-----EALIC 728

Query: 74  HHNLK-----PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
             ++K     PN+ T+  +I+   +++ ++ A+    ++++  L+P    Y  ++AG  +
Sbjct: 729 FQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAK 788

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY---EQLKSAGGQITKYV 185
             ++  A  + +  +     PD+ +F+ LI   S+    I+ Y   E+ +  G +I    
Sbjct: 789 VGNITDACSLFERFKANGGTPDAASFNALIEGMSHANRAIEAYHVFEETRLKGCRINVKA 848

Query: 186 FMALINAYTTCGEFEKARQV 205
            ++L++A       E+A  V
Sbjct: 849 CISLLDALNKAECLEQAAVV 868



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 70/413 (16%), Positives = 156/413 (37%), Gaps = 33/413 (7%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           +V  AL +V+++    L P     N  +    ++   ++  + +  +    LKP+  ++ 
Sbjct: 232 RVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYT 291

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           SMI +  K      A  L   ++    +P A  YN ++ GY      + A  +L ++++ 
Sbjct: 292 SMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKER 351

Query: 146 NVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
              P   +F+ ++     +  +   +  +E +K    +     +  +I+     G+ E+A
Sbjct: 352 GCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKK-DAEPNSSTYNIIIDMLCMAGKVEEA 410

Query: 203 RQVVLDAEIPVKSRSEVKSA-----------LVSALASHGRTSDAIIVYEEIKEAGCNLE 251
             +          R E++ A           +V  L    +   A  ++E   + GCN  
Sbjct: 411 YMI----------RDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPN 460

Query: 252 PRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQLSSATDLLK 309
                +LI+ L  +G ++   +L E + D  +  +      LI +     +      + K
Sbjct: 461 SVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFK 520

Query: 310 QLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLG 369
           ++  +    ++ +   + +   +       DV+ G  + + IK   G  P  +    L+ 
Sbjct: 521 EMNRRGCQPDLTLLNTYMDCVFKAG-----DVEKGRAIFEDIKG-YGFLPDVRSYSILIH 574

Query: 370 ACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
               A   +    I+   +  G   +  +Y  +   F  SG    A ++L +M
Sbjct: 575 GLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEM 627



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 42/222 (18%), Positives = 99/222 (44%), Gaps = 8/222 (3%)

Query: 33  VVEQM-VQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLN 91
           V+E+M V G  VP+    + ++ A   +   +   R+   +     +P    +  +I   
Sbjct: 134 VLEEMSVLGYGVPNPACAD-LVSALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAM 192

Query: 92  VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151
            + +  + A  LL  ++E+       ++  ++    R+  V+GAL ++ E++ + ++PD 
Sbjct: 193 AEARQPERALELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDI 252

Query: 152 QTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV-- 206
             ++  I       N +   K++ +LKS G +     + ++I      G   +A ++   
Sbjct: 253 VLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQ 312

Query: 207 LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC 248
           ++ E  V   +   + ++    S G+  +A  + +++KE GC
Sbjct: 313 METERAVPC-AYAYNTMIMGYGSAGQFENAYKLLDQLKERGC 353



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 27/122 (22%), Positives = 57/122 (46%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  +TP+  ++  L+       +++ AL   + M + +  P+T T + +++      ++N
Sbjct: 699 KKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYN 758

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
                +  +    L PN  T+ +MI+   K+ +   A SL +  K     P A+ +NA++
Sbjct: 759 KAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFKANGGTPDAASFNALI 818

Query: 124 AG 125
            G
Sbjct: 819 EG 820


>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Vitis vinifera]
          Length = 732

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 115/237 (48%), Gaps = 20/237 (8%)

Query: 29  VALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
           +A+ V  +M++  ++PST TI S+L AC E   F L   ++  I    +K +  +  S++
Sbjct: 331 MAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLV 390

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
           ++  K    + + S+ D +   +++     +NAI++G+ +   +  AL++  EM +A  +
Sbjct: 391 TMYAKCGHLEQSCSVFDRMSRRDIVS----WNAIVSGHAQNGHLCKALLLFNEMRKARQR 446

Query: 149 PDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVF-------MALINAYTTCGEFEK 201
           PDS T   L+  C++    I    Q K     +TK           AL++ Y+ CG+   
Sbjct: 447 PDSITVVSLLQACAS----IGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGS 502

Query: 202 ARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
           A++      +P +      S++++   SHG+   A+ +Y +    G  ++P  VI L
Sbjct: 503 AQKCF--DRMPQQDLVS-WSSIIAGYGSHGKGETALRMYSDFLHTG--IQPNHVIYL 554



 Score = 41.6 bits (96), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 33/180 (18%), Positives = 79/180 (43%), Gaps = 10/180 (5%)

Query: 29  VALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
           VA  +   M +  + PS+ T+  +L    E         ++  +  +    +     SM+
Sbjct: 132 VAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQC---LHACVIQYGFGSDVALANSML 188

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
           ++  K    + A +L + +   +++     +N++++GY +  +++  L +L  M+   ++
Sbjct: 189 NVYCKCGRVEDAQALFELMDARDVIS----WNSLVSGYAQLGNIREVLQLLIRMKTDGIE 244

Query: 149 PDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           PD QTF  L+   + +  +      +  +  AG +   ++  +LI  Y  CG    A ++
Sbjct: 245 PDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRI 304


>gi|218197756|gb|EEC80183.1| hypothetical protein OsI_22045 [Oryza sativa Indica Group]
          Length = 577

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/301 (20%), Positives = 139/301 (46%), Gaps = 13/301 (4%)

Query: 6   EITPSSASYKKLITYSC--DLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +I P   S+  LI        L   VAL+++ ++ Q  L P   T N+++ AC +    +
Sbjct: 24  DIEPDLVSFNTLINARAKSGCLAAGVALELLHEVRQAGLRPDAITYNTLISACSQGSNLD 83

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               ++  +     +P+  T+ +M+S++ +      A  +  +L E    P A  YN+++
Sbjct: 84  DAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLL 143

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQ 180
             + ++ DV+    V +E+ +A  + D  T++ +IH        +  +  Y+++++ G  
Sbjct: 144 YAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCT 203

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
                +  L+++        +A +V+ + A+  +K      SAL+ A A  GR  DA   
Sbjct: 204 PDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERT 263

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQL----LEEVHDPDYWMDGCCRLILHC 295
           ++ + E+G   +  A + +++      E  +L+ L    +++ + PD   DG  +++L  
Sbjct: 264 FDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPD---DGLYQVLLAA 320

Query: 296 V 296
           +
Sbjct: 321 L 321



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 114/252 (45%), Gaps = 11/252 (4%)

Query: 97  FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQG--ALMVLKEMEQANVKPDSQTF 154
           FD A  LLD +++ ++ P    +N ++    +   +    AL +L E+ QA ++PD+ T+
Sbjct: 10  FDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELLHEVRQAGLRPDAITY 69

Query: 155 SYLIHNC---SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AE 210
           + LI  C   SN +D +  +E++ ++  +   + + A+++ +  CG+ ++A  +  +  E
Sbjct: 70  NTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEAELMFKELVE 129

Query: 211 IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNR 270
              +  +   ++L+ A A  G       V EE+ +AG   +      +I      G L+ 
Sbjct: 130 KGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDL 189

Query: 271 LIQLLEEVHDPDYWMDGCCRLIL--HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSE 328
            + L +E+       D     +L     +  ++S A  +L+++ D      +     FS 
Sbjct: 190 ALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVT---FSA 246

Query: 329 IFCQIATTDPPD 340
           + C  A +   D
Sbjct: 247 LICAYAKSGRQD 258


>gi|302820365|ref|XP_002991850.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
 gi|300140388|gb|EFJ07112.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
          Length = 425

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 95/204 (46%), Gaps = 3/204 (1%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           TPS+ +Y  +I   C   ++  A+ V+++M+   L P   T+NS++ A   +    L   
Sbjct: 151 TPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACE 210

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           I+  +    +  N+ +F +M+    K      AY  +D+++   + P +  +N ++    
Sbjct: 211 IFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLG 270

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKY 184
           R K    A  VL+EM  A + PD  T++ +I   +   ++ K +E    ++ AG      
Sbjct: 271 RAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVV 330

Query: 185 VFMALINAYTTCGEFEKARQVVLD 208
            +  LI+A    G ++ AR +  D
Sbjct: 331 TYNLLIDALVKAGRYQDARDIYFD 354



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/275 (21%), Positives = 126/275 (45%), Gaps = 4/275 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P++ +YK +I        V +A++++++M++  L P T   N +L    ++   +   ++
Sbjct: 47  PNAYTYKCVIQSLVKAGNVVLAMELLDKMIKTGLEPDTLLCNVVLDGLGKANMMDEACKL 106

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +       +  T+  +I    + K  + A  L D+++E    P+A  Y  ++  Y +
Sbjct: 107 FASMKSMGCPADDYTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCK 166

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS---NEEDIIKYYEQLKSAGGQITKYV 185
              ++ A++VLK+M   N+ PD  T + LI   S     E   + +E++K +G  +    
Sbjct: 167 AGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVS 226

Query: 186 FMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           F A+++     G+   A Q + + E   +K  S   + L++ L      S+A  V +E++
Sbjct: 227 FNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMR 286

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279
            AG   +      +IE     G + +  ++  ++ 
Sbjct: 287 SAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDME 321



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 73/383 (19%), Positives = 156/383 (40%), Gaps = 51/383 (13%)

Query: 50  NSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKE 109
           N+++ A   S   + V   +  +  H  KPN+ T++ +I   VK  +   A  LLD + +
Sbjct: 18  NAVIAAYGRSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLVKAGNVVLAMELLDKMIK 77

Query: 110 MNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEED 166
             L P   + N ++ G  +   +  A  +   M+      D  T++ LI +   C  +E+
Sbjct: 78  TGLEPDTLLCNVVLDGLGKANMMDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEE 137

Query: 167 IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV---LDAEIPVKSRSEVKSAL 223
               +++++  G   +   +  +I+ Y   G  E A  V+   LD  +     +   ++L
Sbjct: 138 ATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYT--LNSL 195

Query: 224 VSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY 283
           ++A++  GRT  A  ++E +K++G  +   +  A+++     G++    Q ++E+     
Sbjct: 196 ITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGI 255

Query: 284 WMDGCC-RLILHCV-RFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDV 341
             +      +++C+ R K  S A  +L++++                             
Sbjct: 256 KPNSITFNTLINCLGRAKYASEAYKVLQEMRSA--------------------------- 288

Query: 342 QIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLW 401
                         GL P       ++ A   A ++ +A  ++ + E AG   NV++Y  
Sbjct: 289 --------------GLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNL 334

Query: 402 MYKAFLASGNRKSASKLLSKMPK 424
           +  A + +G  + A  +   M K
Sbjct: 335 LIDALVKAGRYQDARDIYFDMKK 357



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 72/152 (47%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +   LIT      +  +A ++ E+M +  +  +T + N++L  C ++ +  L  
Sbjct: 185 LAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAY 244

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +    +    +KPNS TF ++I+   + K    AY +L +++   L P    Y  ++  +
Sbjct: 245 QFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAF 304

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            +  ++  A  +  +ME+A    +  T++ LI
Sbjct: 305 AKAGNMGKAFEMFGDMEKAGCSANVVTYNLLI 336


>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 94/461 (20%), Positives = 173/461 (37%), Gaps = 84/461 (18%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K +  P+ ++Y  LI   C   K+  A ++ + M +  L P+  T+N ++    +S + +
Sbjct: 370 KKDAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLD 429

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               I+  + +    P+  TF S+I    K+   D AY + + + + +    + +Y +++
Sbjct: 430 EACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLI 489

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK 183
             +F     +    + K+M   N  PD Q                               
Sbjct: 490 KNFFNHGRKEDGHKIYKDMVNQNCSPDLQ------------------------------- 518

Query: 184 YVFMALINAYTTC----GEFEKARQVVLDAEIPVKSRSEVKSA-----LVSALASHGRTS 234
                L+N Y  C    GE EK R +  +    +KSR  V  A     L+  L   G  +
Sbjct: 519 -----LLNTYMDCMFKAGEPEKGRAMFEE----IKSRRFVPDARSYSILIHGLIKAGFAN 569

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDYWMDGCCR 290
           +   ++  +KE GC L+ RA   +I+     G++N+  QLLEE+     +P     G   
Sbjct: 570 ETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYG--S 627

Query: 291 LILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTD------------- 337
           +I    +  +L  A  L ++ K K  +  + +     + F ++   D             
Sbjct: 628 VIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKG 687

Query: 338 -PPDVQIGLDLLQFI---------------KDELGLPPSRKCLDFLLGACVNARDLKRAH 381
             P+V     LL  +                 EL   P++     L+      R   +A 
Sbjct: 688 LTPNVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAF 747

Query: 382 LIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           + W+E +  G+  + +SY  M      +GN   A  L  + 
Sbjct: 748 VFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRF 788



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 119/267 (44%), Gaps = 23/267 (8%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           K+    DVV+ M + +  P+     +++ A       +++  ++  +     +P    F 
Sbjct: 148 KLREGFDVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFT 207

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           ++I    K    DSA SLLD++K  +L     +YN  +  + +   V  A     E+E  
Sbjct: 208 TLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEAN 267

Query: 146 NVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
            +KPD  T++ +I      +  ++ ++ +E L+        Y +  +I  Y + G+F++A
Sbjct: 268 GLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEA 327

Query: 203 RQVVLDAEIPVKSRSEVKSALVSALASH---------GRTSDAIIVYEEI-KEAGCNLEP 252
             ++         R   K ++ S +A +         G+  +A+ V+EE+ K+A  NL  
Sbjct: 328 YSLL--------ERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMKKDAAPNLST 379

Query: 253 RAVIALIEHLNSEGELNRLIQLLEEVH 279
             +  LI+ L   G+L+   +L + + 
Sbjct: 380 YNI--LIDMLCRAGKLDCAFELRDSMQ 404



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 85/187 (45%), Gaps = 13/187 (6%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y  LI     + ++  A  ++E+++Q  L P+  T NS+L A  ++ E N       ++C
Sbjct: 660 YSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEIN-----EALVC 714

Query: 74  HHNLK-----PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
             ++K     PN  T+  +I+   K++ F+ A+    ++++  + P+   Y  +++G  +
Sbjct: 715 FQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAK 774

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQITKYV 185
             ++  A  +    +     PDS  ++ +I   SN     D    +E+ +  G  I    
Sbjct: 775 AGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLHIHNKT 834

Query: 186 FMALINA 192
            + L++ 
Sbjct: 835 CVVLLDT 841



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/152 (19%), Positives = 68/152 (44%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           +TP+  ++  L+       +++ AL   + M + +  P+  T   +++   +  +FN   
Sbjct: 688 LTPNVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAF 747

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
             +  +    +KP++ ++ +MIS   K  +   A +L D  K    +P ++ YNA++ G 
Sbjct: 748 VFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGL 807

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
                   A  + +E  +  +   ++T   L+
Sbjct: 808 SNGNRAMDAFSLFEETRRRGLHIHNKTCVVLL 839


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 90/426 (21%), Positives = 176/426 (41%), Gaps = 20/426 (4%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  L+   C + ++  A  +++QMV+    P T T N I+      +      
Sbjct: 253 VQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAF 312

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R+   + +  + PN  T+  MI    +  + + A  LL+++    L P A +Y  +++GY
Sbjct: 313 RLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGY 372

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLKSAGGQITK 183
            R+ +V  A  +  +M + NV PD   ++ LI   S     E+  KY+ Q++  G    +
Sbjct: 373 CREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNE 432

Query: 184 YVFMALINAYTTCGEFEKARQVV---LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
           + +  LI+ Y   G+ E A Q+V   LD  +  K    +   L+ +             +
Sbjct: 433 FTYSGLIHGYLKNGDLESAEQLVQRMLDTGL--KPNDVIYIDLLESYFKSDDIEKVSSTF 490

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYWMDGCCRLILHCV 296
           + + + G  L+ R    LI +L+S G +    ++L E+      PD  +     LI    
Sbjct: 491 KSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHV--YSSLISGLC 548

Query: 297 RFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELG 356
           +      A  +L ++  K  D  +       +  C+       D+    ++   I  + G
Sbjct: 549 KTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSG-----DISYARNVFNSILAK-G 602

Query: 357 LPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSAS 416
           L P+      L+       D+  A  ++ E    G+  +   Y  +     ++G+ + A 
Sbjct: 603 LVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAM 662

Query: 417 KLLSKM 422
            L+ +M
Sbjct: 663 FLIEEM 668



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 90/396 (22%), Positives = 163/396 (41%), Gaps = 29/396 (7%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P++  Y  LI+  C    V +A ++ ++M +  ++P     NS++    +        
Sbjct: 358 LKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEEST 417

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           + +  +    L PN  T+  +I   +K  D +SA  L+  + +  L P   +Y  ++  Y
Sbjct: 418 KYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESY 477

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS---NEEDIIKYYEQLKSAGGQITK 183
           F+  D++      K M    V  D++ +  LIHN S   N E   +   +++  G     
Sbjct: 478 FKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDV 537

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           +V+ +LI+      + EKA  ++ + ++  V       +AL+  L   G  S A  V+  
Sbjct: 538 HVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNS 597

Query: 243 IKEAGCNLEPRAV--IALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQ 300
           I   G  L P  V   +LI+     G+++    L  E+       D      ++ V    
Sbjct: 598 ILAKG--LVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDA----FVYSVLTTG 651

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFS--------EIFCQIATTDPPDVQIGLDLLQFIK 352
            SSA DL + +   F  +EM +  H S        + FC+        +Q  L LL  I 
Sbjct: 652 CSSAGDLEQAM---FLIEEMFLRGHASISSFNNLVDGFCKRG-----KMQETLKLLHVIM 703

Query: 353 DELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYE 388
              GL P+   ++ ++     A  L   H I+ E +
Sbjct: 704 GR-GLVPNALTIENIISGLSEAGKLSEVHTIFVELQ 738



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 63/295 (21%), Positives = 119/295 (40%), Gaps = 45/295 (15%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           +V  A +VV  M    L PS    N++L     +    L+ ++   +    + P+  T+ 
Sbjct: 62  RVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYS 121

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           ++I    K+++FD+A  +L +++E         YN ++AG  R   V+ A    K+ME  
Sbjct: 122 TLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDY 181

Query: 146 NVKPDSQTFSYLIH------------------NCS--------------------NEEDI 167
            + PD  T+  LI+                  +C+                    N ++ 
Sbjct: 182 GLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEA 241

Query: 168 IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSAL 223
            K  +++ +AG Q  K  +  L+      G+ ++A    +Q+V D+  P    +   + +
Sbjct: 242 FKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRP---DTITYNLI 298

Query: 224 VSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           +     H    DA  +  E++ AG +        +I  L   GE  +   LLEE+
Sbjct: 299 IEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEM 353



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 111/240 (46%), Gaps = 4/240 (1%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           ++ +Y  LI   C    V  A    + M    LVP   T  ++++   +S   N  + + 
Sbjct: 151 NTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALL 210

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
             +    LKPN   + ++I   ++  + D A+ ++ ++    + P    Y+ ++ G  + 
Sbjct: 211 DEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKM 270

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVF 186
             +  A ++LK+M + + +PD+ T++ +I       N++D  +   ++++AG     Y +
Sbjct: 271 GQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTY 330

Query: 187 MALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
             +I+     GE EKA  ++ +     +K  + V + L+S     G  S A  +++++ +
Sbjct: 331 SIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTK 390


>gi|302822703|ref|XP_002993008.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
 gi|300139208|gb|EFJ05954.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
          Length = 431

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 95/204 (46%), Gaps = 3/204 (1%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           TPS+ +Y  +I   C   ++  A+ V+++M+   L P   T+NS++ A   +    L   
Sbjct: 151 TPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACE 210

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           I+  +    +  N+ +F +M+    K      AY  +D+++   + P +  +N ++    
Sbjct: 211 IFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLG 270

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKY 184
           R K    A  VL+EM  A + PD  T++ +I   +   ++ K +E    ++ AG      
Sbjct: 271 RAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVV 330

Query: 185 VFMALINAYTTCGEFEKARQVVLD 208
            +  LI+A    G ++ AR +  D
Sbjct: 331 TYNLLIDALVKAGRYQDARDIYFD 354



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/275 (21%), Positives = 125/275 (45%), Gaps = 4/275 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P++ +YK +I        V +A+D +++M++  L P T   N +L    ++   +   ++
Sbjct: 47  PNAYTYKCVIQSLVKAGNVVLAMDFLDKMIKTGLEPDTLLYNVVLDGLGKANMIDEACKL 106

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +       +  T+  +I    + K  + A  L D+++E    P+A  Y  ++  Y +
Sbjct: 107 FASMKSMGCPADDYTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCK 166

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS---NEEDIIKYYEQLKSAGGQITKYV 185
              ++ A++VLK+M   N+ PD  T + LI   S     E   + +E++K +G  +    
Sbjct: 167 AGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVS 226

Query: 186 FMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           F A+++     G+   A Q + + E   +K  S   + L++ L      S+A  V +E++
Sbjct: 227 FNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMR 286

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279
            AG   +      +IE     G + +  ++  ++ 
Sbjct: 287 SAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDME 321



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 72/152 (47%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +   LIT      +  +A ++ E+M +  +  +T + N++L  C ++ +  L  
Sbjct: 185 LAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAY 244

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +    +    +KPNS TF ++I+   + K    AY +L +++   L P    Y  ++  +
Sbjct: 245 QFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAF 304

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            +  ++  A  +  +ME+A    +  T++ LI
Sbjct: 305 AKAGNMGKAFEMFGDMEKAGCSANVVTYNLLI 336



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/361 (19%), Positives = 155/361 (42%), Gaps = 36/361 (9%)

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKS 176
           NA++A Y R   +   +   +E+++   KP++ T+  +I +     +++    + +++  
Sbjct: 18  NAVIAAYGRSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLVKAGNVVLAMDFLDKMIK 77

Query: 177 AGGQITKYVFMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSD 235
            G +    ++  +++        ++A ++    + +   +     + L+ +L    R  +
Sbjct: 78  TGLEPDTLLYNVVLDGLGKANMIDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEE 137

Query: 236 AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDP-----DYWMDGCCR 290
           A ++++E++E GC     A   +I+     G +   + +L+++ D      DY ++    
Sbjct: 138 ATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNS--- 194

Query: 291 LILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIF--CQIATTDPPDVQIGLDLL 348
           LI    R  +   A ++ +++K   K         F+ +   C  A       ++GL   
Sbjct: 195 LITAVSRTGRTELACEIFERMK---KSGVAVNTVSFNAMLDCCGKAG------KVGL-AY 244

Query: 349 QFIKDEL---GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKA 405
           QF+ DE+   G+ P+    + L+     A+    A+ + +E  +AGL  +V +Y  M +A
Sbjct: 245 QFM-DEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEA 303

Query: 406 FLASGNRKSASKLLSKMPKDDPHVRFVIQACKQTYT--IPSLQKERGFEKDRDTLLLHKE 463
           F  +GN   A ++   M K       V      TY   I +L K   ++  RD     K+
Sbjct: 304 FAKAGNMGKAFEMFGDMEKAGCSANVV------TYNLLIDALVKAGRYQDARDIYFDMKK 357

Query: 464 R 464
           +
Sbjct: 358 K 358


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 115/250 (46%), Gaps = 4/250 (1%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  + P+  +Y  LI   C+  K+  A+D+ ++MV   L P+  T N++++   +     
Sbjct: 301 KQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMK 360

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              +++  +    L PN  TF +MI    K    +  +SL   + +  ++P  S YN ++
Sbjct: 361 EATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLI 420

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE--DIIKYYEQLKSAGGQ 180
           AG  RK+D+Q A  +L EME   +K D  T++ LI   C N++  +  K   ++ + G +
Sbjct: 421 AGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLK 480

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIV 239
                +  L++ Y   G+ + A  V    E   K  + V  + L+       +   A  +
Sbjct: 481 PNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANGL 540

Query: 240 YEEIKEAGCN 249
             E+ E G N
Sbjct: 541 LNEMLEKGLN 550



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 92/446 (20%), Positives = 186/446 (41%), Gaps = 34/446 (7%)

Query: 25  LKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETF 84
           L++H A +   +        S  + N +L A  +  +   V  +Y  +    +  N  TF
Sbjct: 144 LELHCAYEAFTRAKDYGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTF 203

Query: 85  RSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD---VQGALMVLKE 141
              I+   +    + A   ++D+K   + P    YN ++ GY ++     +  A   +KE
Sbjct: 204 NIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKE 263

Query: 142 MEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINAYTTCGE 198
           M    + P+  TF+ LI     +E++    K +E+++  G +     + +LIN     G+
Sbjct: 264 MLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGK 323

Query: 199 FEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI 256
            E+A   + D  + +  +  + +  AL++         +A  V++++ +    L P  + 
Sbjct: 324 LEEAID-LWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQ--ELVPNVIT 380

Query: 257 --ALIEHLNSEGELNRLIQLLEEVHD----PDYWMDGCCRLILHCVRFKQLSSATDLLKQ 310
              +I+    EG +     L   + D    P+     C  LI    R + L +A +LL +
Sbjct: 381 FNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNC--LIAGLCRKQDLQAAKELLNE 438

Query: 311 LKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLL-G 369
           +++K    ++       +  C+   +   +      LL  + + LGL P+    + L+ G
Sbjct: 439 MENKGLKGDVVTYNILIDGLCKNDKSRNAE-----KLLNEMFN-LGLKPNHVTYNTLMDG 492

Query: 370 ACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHV 429
            C+  + LK A  +    E      NV++Y  + K +      ++A+ LL++M +     
Sbjct: 493 YCMEGK-LKAALNVRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKG--- 548

Query: 430 RFVIQACKQTYTIPSLQK-ERGFEKD 454
              +   + TY I  L+  E+GF  D
Sbjct: 549 ---LNPNRTTYDIVRLEMLEKGFSPD 571



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 75/155 (48%), Gaps = 3/155 (1%)

Query: 7   ITPSSASYKKLITYSC---DLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           I+P+  +Y  L+   C      K++ A   +++M+  ++ P+  T N+++    +     
Sbjct: 231 ISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVA 290

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             ++ +  +    LKPN  T+ S+I+        + A  L D +  + L P    YNA++
Sbjct: 291 AAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALI 350

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            G+ +KK ++ A  V  ++ +  + P+  TF+ +I
Sbjct: 351 NGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMI 385



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 69/156 (44%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           +K E+ P+  ++  +I   C    +     +   M+   ++P+  T N ++       + 
Sbjct: 370 SKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDL 429

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
              + +   + +  LK +  T+  +I    K     +A  LL+++  + L P    YN +
Sbjct: 430 QAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTL 489

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
           M GY  +  ++ AL V   ME+   +P+  T++ LI
Sbjct: 490 MDGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVLI 525



 Score = 42.0 bits (97), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 41/205 (20%), Positives = 90/205 (43%), Gaps = 6/205 (2%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEF 62
           K  I  +  ++   I   C   K++ A D +E M    + P+  T N+++   C+     
Sbjct: 193 KRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAG 252

Query: 63  NLVRRIYPM--ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
            + +    M  +  + + PN  TF ++I    K ++  +A    +++++  L P    YN
Sbjct: 253 KMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYN 312

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSA 177
           +++ G      ++ A+ +  +M    +KP+  T++ LI+  C  +  ++  K ++ +   
Sbjct: 313 SLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQ 372

Query: 178 GGQITKYVFMALINAYTTCGEFEKA 202
                   F  +I+AY   G  E+ 
Sbjct: 373 ELVPNVITFNTMIDAYCKEGMMEEG 397



 Score = 39.3 bits (90), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 31/149 (20%), Positives = 65/149 (43%), Gaps = 2/149 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           I P+ ++Y  LI   C    +  A +++ +M    L     T N ++   C+     N  
Sbjct: 409 ILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAE 468

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           + +  M  +  LKPN  T+ +++          +A ++   +++    P    YN ++ G
Sbjct: 469 KLLNEMF-NLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIKG 527

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTF 154
           Y +   ++ A  +L EM +  + P+  T+
Sbjct: 528 YCKINKLEAANGLLNEMLEKGLNPNRTTY 556


>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 770

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 98/429 (22%), Positives = 176/429 (41%), Gaps = 74/429 (17%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           ++  L+   C     H A+D+   M +  L+P   + N++++   +       + ++  +
Sbjct: 131 NFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVINGLCKGKRLVEAKELFKEM 190

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
                KPNS TF ++I    K  D +  + LL+++++M L     +Y+A+++G+  K D+
Sbjct: 191 KGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDI 250

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINA 192
           +    +  EM + NV P+  T+S                                 L+NA
Sbjct: 251 ERGKELFNEMLRKNVTPNVVTYS--------------------------------CLMNA 278

Query: 193 YTTCGEFEKARQVVLDAEIPVKSRSEVK--SALVSALASHGRTSDAIIVYEEIKEAGCNL 250
                ++++A Q +LD     K R +V   + L   L+ +GR SDAI V + + + G   
Sbjct: 279 LCKKQKWKEAAQ-MLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRG--E 335

Query: 251 EPRAVI--ALIEHLNSEGELNRLIQLLEEV----HDPDY-----WMDGCCRLILHCVRFK 299
           EP  V   A+I  L  EG ++  + +LE +      PD       + G C +        
Sbjct: 336 EPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGV-------G 388

Query: 300 QLSSATDLLKQLKDK---FKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELG 356
           ++  A DLL  L  K    K D  A      E+  Q        V        +   E G
Sbjct: 389 KIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRV-------YYTMVERG 441

Query: 357 LPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAF-------LAS 409
            P +    + L+   ++A  L +A  +WK+  ++G+  N  +Y  +           +A 
Sbjct: 442 FPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAK 501

Query: 410 G--NRKSAS 416
           G  N+K AS
Sbjct: 502 GLFNKKRAS 510



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 83/407 (20%), Positives = 170/407 (41%), Gaps = 31/407 (7%)

Query: 28  HVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSM 87
           HV + V  +M    + P   ++++++ +   + + +    +  +I       N   F  +
Sbjct: 77  HV-ISVHSKMASVSVFPCFTSLSALIESFVNTQKPSFAFGVLGLIMKRGFHLNVYNFNLL 135

Query: 88  ISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANV 147
           +    +  D   A  L   +K   L+P    YN ++ G  + K +  A  + KEM+    
Sbjct: 136 LKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVINGLCKGKRLVEAKELFKEMKGGEC 195

Query: 148 KPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204
           KP+S TFS LI   C N   E+     E+++  G +   +V+ ALI+ + + G+ E+ ++
Sbjct: 196 KPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKE 255

Query: 205 VVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV--IALIEH 261
           +  +     V       S L++AL    +  +A  + + +   GC + P  V    L + 
Sbjct: 256 LFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTM--TGCKVRPDVVAYTVLADG 313

Query: 262 LNSEGELNRLIQLL-------EEVHDPDY--WMDGCCRLILHCVRFKQLSSATDLLKQLK 312
           L+  G  +  I++L       EE ++  Y   ++G C+         ++  A  +L+ + 
Sbjct: 314 LSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKE-------GRVDDALGILETMA 366

Query: 313 DKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFI-KDELGLPPSRKCLDFLLGAC 371
            K K  ++       +  C +   D       +DLL  +   E  + P     + ++   
Sbjct: 367 KKGKKPDVVTYSTLVKGLCGVGKIDE-----AVDLLNLLMSKEFHIKPDVFAFNLVIQEL 421

Query: 372 VNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKL 418
              R L+ A  ++      G P N+++Y  +   +L++G    A +L
Sbjct: 422 CKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALEL 468



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 66/347 (19%), Positives = 136/347 (39%), Gaps = 40/347 (11%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M  +  I P   ++  +I   C   ++  A  V   MV+     +  T N ++     + 
Sbjct: 401 MSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAG 460

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           +      ++       + PN+ T+  +I+   K++    A  L +  +     PT S YN
Sbjct: 461 KLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYN 520

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQ 180
            +MA   R+  V+ A  + +EM  AN  PD  +F+                         
Sbjct: 521 TLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNI------------------------ 556

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIV 239
                   +I+     G+ E A++++L+          +  S L++     G+  +A  +
Sbjct: 557 --------IIDGTLKAGDVESAKELLLEMLNMNLVPDNITFSILINRFLKLGQLDEAASL 608

Query: 240 YEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDG-CCRLILHCV 296
           YE +    C   P AV+  +L++  + +G+  +++ +L+++ D D  +D      IL C+
Sbjct: 609 YERM--VSCGHVPDAVLFDSLLKGYSLKGKTEKVVSMLQQMADKDVVLDSKLTSTILACL 666

Query: 297 RFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQI 343
               +S   D+ K L    +   +      +E+  ++    P +  I
Sbjct: 667 --CNMSKDVDIEKILPKFSQHTSVGASIKCNELLMKLNKVHPDNANI 711


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 142/315 (45%), Gaps = 10/315 (3%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           +P   ++  L+   C +  V+ ALD+V+ M++    P   T NS++    +  EF     
Sbjct: 260 SPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIE 319

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           I   +      PN+ T+ ++IS   K  + ++A  L   L    L+P    +N ++ G  
Sbjct: 320 ILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLC 379

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKY 184
             K+   A+ + +EM+    KPD  T+S LI +   E   ++ +   ++++S+G      
Sbjct: 380 LSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAV 439

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEI 243
           V+  LI+        E A ++    E+   SRS V  + L+  L  + R  +A  + +++
Sbjct: 440 VYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQM 499

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDYWMDGCCRLILHCVRFK 299
              G   +     +L+ +    G++ +   +++ +     +PD +  G   LI    R  
Sbjct: 500 IMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYG--TLIGGLCRAG 557

Query: 300 QLSSATDLLKQLKDK 314
           ++  A+ LL+ ++ K
Sbjct: 558 RVDVASKLLRSVQMK 572



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 63/283 (22%), Positives = 122/283 (43%), Gaps = 7/283 (2%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           E +P++ +Y  LI+  C   ++  A D+   +V   L+P   T N+++     S   ++ 
Sbjct: 328 ECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIA 387

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             ++  + +   KP+  T+  +I      +    A  LL +++       A +YN ++ G
Sbjct: 388 MEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDG 447

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQIT 182
             + + ++ A  +  +ME   V   S T++ LI   C N+  E+  +  +Q+   G +  
Sbjct: 448 LCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPD 507

Query: 183 KYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
           K+ + +L+  +   G+ EKA  +V   A    +        L+  L   GR   A  +  
Sbjct: 508 KFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLR 567

Query: 242 EIKEAGCNLEPRAVIALIEHL---NSEGELNRLIQLLEEVHDP 281
            ++  G  L P A   +I+ L       E  RL + + E  DP
Sbjct: 568 SVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEKSDP 610



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/419 (19%), Positives = 165/419 (39%), Gaps = 47/419 (11%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P++ ++  LI    +  ++   L ++E  +     P T   N  L+A  E  +  LV  +
Sbjct: 88  PNATTFATLIQSFTNFHEIENLLKILENELG--FKPDTNFYNIALNALVEDNKLKLVEML 145

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  + +  +  +  TF  +I    K      A  +L+++    L P    +  +M G+  
Sbjct: 146 HSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIE 205

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMA 188
           + D+ GAL                                K  +Q+   G  +T      
Sbjct: 206 EGDLNGAL--------------------------------KMKKQMLGYGCLLTNVSVKV 233

Query: 189 LINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAG 247
           L+N +   G  E+A + VL+      S  +V  ++LV+     G  +DA+ + + + E G
Sbjct: 234 LVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKG 293

Query: 248 CNLEPRAVIALIEHLNSEGELNRLIQLLEEV----HDPDYWMDGCCRLILHCVRFKQLSS 303
            + +     +LI  +   GE  + I++L+++      P+        LI    +  ++ +
Sbjct: 294 FDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYN--TLISALCKENEIEA 351

Query: 304 ATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKC 363
           ATDL + L  K    ++       +  C     D     I +++ + +K++ G  P    
Sbjct: 352 ATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQD-----IAMEMFEEMKNK-GCKPDEFT 405

Query: 364 LDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
              L+ +    R LK A ++ KE E++G   N + Y  +      S   + A ++  +M
Sbjct: 406 YSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQM 464



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 84/424 (19%), Positives = 172/424 (40%), Gaps = 46/424 (10%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           ++ S K L+   C   +V  AL  V ++ +    P   T NS+++        N    I 
Sbjct: 227 TNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIV 286

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
             +      P+  T+ S+IS   K+ +F+ A  +L  +      P    YN +++   ++
Sbjct: 287 DFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKE 346

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHN--CSNEEDI-IKYYEQLKSAGGQITKYVF 186
            +++ A  + + +    + PD  TF+ LI     S  +DI ++ +E++K+ G +  ++ +
Sbjct: 347 NEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTY 406

Query: 187 MALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKE 245
             LI++       ++A  ++ + E    +R+ V  + L+  L    R  DA  ++++++ 
Sbjct: 407 SILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMEL 466

Query: 246 AGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSAT 305
            G +              S    N LI             DG C       + K++  A+
Sbjct: 467 LGVS-------------RSSVTYNTLI-------------DGLC-------KNKRVEEAS 493

Query: 306 DLLKQL-KDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCL 364
            L+ Q+  +  K D+       +  FC++      D++   D++Q +    G  P     
Sbjct: 494 QLMDQMIMEGLKPDKFTYNSLLT-YFCRVG-----DIEKAGDIVQTMASN-GCEPDIFTY 546

Query: 365 DFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSK-MP 423
             L+G    A  +  A  + +  +  G+     +Y  + +A       K   +L  + M 
Sbjct: 547 GTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMME 606

Query: 424 KDDP 427
           K DP
Sbjct: 607 KSDP 610



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 69/159 (43%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           L ++ SS +Y  LI   C   +V  A  +++QM+   L P   T NS+L       +   
Sbjct: 467 LGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEK 526

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
              I   +  +  +P+  T+ ++I    +    D A  LL  ++   ++ T   YN ++ 
Sbjct: 527 AGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQ 586

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163
             F +K  +  + + +EM + +  PD+ T   +     N
Sbjct: 587 ALFMRKRTKEGMRLFREMMEKSDPPDALTHKIVFRGLCN 625



 Score = 45.8 bits (107), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 71/369 (19%), Positives = 149/369 (40%), Gaps = 29/369 (7%)

Query: 69  YPMIC-------HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
           +P +C       HH L PN      +     +   FDS  +LL  LK    +P A+ +  
Sbjct: 40  FPTLCTTPSSTTHHPLPPNETLLLQL----TQSSSFDSITTLLKQLKSSGSIPNATTFAT 95

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA---- 177
           ++  +    +++  L +L+   +   KPD+  F  +  N   E++ +K  E L S     
Sbjct: 96  LIQSFTNFHEIENLLKILE--NELGFKPDTN-FYNIALNALVEDNKLKLVEMLHSKMVNE 152

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDA 236
           G  +    F  LI A     +   A  ++ + A   +K      + L+      G  + A
Sbjct: 153 GIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGA 212

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILH 294
           + + +++   GC L   +V  L+     EG +   ++ + EV +  +  D      L+  
Sbjct: 213 LKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNG 272

Query: 295 CVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLL-QFIKD 353
             R   ++ A D++  + +K  D ++          C++      + +  +++L Q I  
Sbjct: 273 FCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLG-----EFEKAIEILQQMILR 327

Query: 354 ELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRK 413
           E    P+    + L+ A     +++ A  + +   + GL  +V ++  + +    S N+ 
Sbjct: 328 ECS--PNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQD 385

Query: 414 SASKLLSKM 422
            A ++  +M
Sbjct: 386 IAMEMFEEM 394


>gi|255573471|ref|XP_002527661.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532966|gb|EEF34732.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 766

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 95/448 (21%), Positives = 186/448 (41%), Gaps = 33/448 (7%)

Query: 8   TPSSASYKKLITYSC--------DLLKVHVALDVVEQMVQGELVPSTETINSILHACEES 59
           +P+  +Y  ++ Y C        D++K   A +V+E+M      P+  T  + +H    +
Sbjct: 245 SPNVFTYTIMMNYYCKGSFGKNIDIVK---ATEVLEEMEMNGESPTVVTYGAYIHGLCRA 301

Query: 60  YEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMY 119
                  R+   +   N   NS  + ++I    +  +   A+ LL+D++   + PTA  Y
Sbjct: 302 GCVEFALRLIRDLRIRNQPLNSYCYNAVIHEFCRNGELHEAFELLEDMRSHGISPTAYSY 361

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSN--EEDIIKYYEQLKS 176
           + ++ G  +K  V+ AL +++EM Q+NVKP   T+S L    C +   E  +  +  L +
Sbjct: 362 SILIDGLCKKGQVEKALDLIEEMVQSNVKPSLVTYSSLFDGLCKSGLTEISLSMFHNLGA 421

Query: 177 AGGQITKYVFMALINAYTTCGEFEKARQVV----LDAEIPVKSRSEVKSALVSALASHGR 232
            G +     +  LIN +    +   A ++V    ++  +P    S   + L+       R
Sbjct: 422 EGYKHDVISYNTLINGFVLQRDMGSACKLVHEMRMNGSVP---NSFTFNRLIHGFCKRQR 478

Query: 233 TSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYWMDGC 288
              A+ V+  + + G  L       + +  N EG     ++L+ EV D    P+ +    
Sbjct: 479 LDKALEVFTIMLKVGVQLNIFTCNIMADEFNREGHFWEALKLINEVQDLGIVPNSYTYNI 538

Query: 289 CRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLL 348
             +I    + ++   A ++L  +    K++      H++ +    A    P   +   LL
Sbjct: 539 --VIKWLCKEQKTEKAWEVLPVM---LKNNVFPCAIHYNTLIDGYAKQSNPTKAL---LL 590

Query: 349 QFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLA 408
                ++G+PPS      L+    N   ++ A+ ++KE    GL  + + +  +   F  
Sbjct: 591 YAKMLKVGIPPSIVTYTMLINMFSNRSKMQEAYYLFKEMIKKGLVPDEIIFTCIIAGFCK 650

Query: 409 SGNRKSASKLLSKMPKDDPHVRFVIQAC 436
            G+ KSA  L  +M +       V   C
Sbjct: 651 VGDMKSAWALYEEMSQWGKSPNVVTYTC 678



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 126/281 (44%), Gaps = 14/281 (4%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I+P++ SY  LI   C   +V  ALD++E+MVQ  + PS  T +S+     +S    +  
Sbjct: 354 ISPTAYSYSILIDGLCKKGQVEKALDLIEEMVQSNVKPSLVTYSSLFDGLCKSGLTEISL 413

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +     K +  ++ ++I+  V  +D  SA  L+ +++    +P +  +N ++ G+
Sbjct: 414 SMFHNLGAEGYKHDVISYNTLINGFVLQRDMGSACKLVHEMRMNGSVPNSFTFNRLIHGF 473

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQITK 183
            +++ +  AL V   M +  V+ +  T + +    + E    + +K   +++  G     
Sbjct: 474 CKRQRLDKALEVFTIMLKVGVQLNIFTCNIMADEFNREGHFWEALKLINEVQDLGIVPNS 533

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEV------KSALVSALASHGRTSDAI 237
           Y +  +I       + EKA +V     +PV  ++ V       + L+   A     + A+
Sbjct: 534 YTYNIVIKWLCKEQKTEKAWEV-----LPVMLKNNVFPCAIHYNTLIDGYAKQSNPTKAL 588

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           ++Y ++ + G          LI   ++  ++     L +E+
Sbjct: 589 LLYAKMLKVGIPPSIVTYTMLINMFSNRSKMQEAYYLFKEM 629



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 90/204 (44%), Gaps = 3/204 (1%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           L I P+S +Y  +I + C   K   A +V+  M++  + P     N+++    +      
Sbjct: 527 LGIVPNSYTYNIVIKWLCKEQKTEKAWEVLPVMLKNNVFPCAIHYNTLIDGYAKQSNPTK 586

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
              +Y  +    + P+  T+  +I++         AY L  ++ +  L+P   ++  I+A
Sbjct: 587 ALLLYAKMLKVGIPPSIVTYTMLINMFSNRSKMQEAYYLFKEMIKKGLVPDEIIFTCIIA 646

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQI 181
           G+ +  D++ A  + +EM Q    P+  T++ LI      + + K    + ++K      
Sbjct: 647 GFCKVGDMKSAWALYEEMSQWGKSPNVVTYTCLIDGYFKIKRMDKADFLFNKMKRDNVTP 706

Query: 182 TKYVFMALINAYTTCGEFEKARQV 205
               + ALI  Y + G  ++ R++
Sbjct: 707 DGLTYTALIFGYQSLGYSDRVREM 730


>gi|356513139|ref|XP_003525271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Glycine max]
          Length = 621

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 114/245 (46%), Gaps = 4/245 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  LI   C   K+  A +V+ +MV   + P   T N++  A  ++ E     
Sbjct: 197 VKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETEKAE 256

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R+   + ++ +KPN  T   +IS   K  +   A   L  +KE+ + P   ++N+++ GY
Sbjct: 257 RLILKMQYNKVKPNERTCGIIISGYCKEGNMTEALRFLYRMKELGVHPNPVVFNSLIKGY 316

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITK 183
               D  G    L  ME+  +KPD  TFS +++  S+    ++  + +  +  AG +   
Sbjct: 317 LDATDTNGVDEALTLMEEFGIKPDVVTFSTIMNAWSSAGLMDNCEEIFNDMVKAGIEPDI 376

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           + +  L   Y   G+  KA  ++   ++  V++   + + ++S   + G+   A  + E+
Sbjct: 377 HAYSILAKGYVRAGQPRKAESLLTSMSKYGVQTNVVIFTTIISGWCAAGKMDRAFSLCEK 436

Query: 243 IKEAG 247
           + E G
Sbjct: 437 MHEMG 441



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 105/240 (43%), Gaps = 5/240 (2%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           K H A  V   + +    P+  T  +++ A      F  +  +   +  + +KP+S    
Sbjct: 75  KPHEAQAVFHNLTEEGHKPTLITYTTLVAALTRQKRFKSIPALLSKVADNGMKPDSILLN 134

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQ- 144
           +MI+        D A  +   +KE    PT S YN ++ G+        ++ +L+ M Q 
Sbjct: 135 AMINAFSDSGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIVGRPYESMKLLEMMGQD 194

Query: 145 ANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEK 201
            NVKP+ +T++ LI   C+ +  E+      ++ ++G Q     +  +  AY   GE EK
Sbjct: 195 ENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETEK 254

Query: 202 ARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE 260
           A +++L  +   VK        ++S     G  ++A+     +KE G +  P    +LI+
Sbjct: 255 AERLILKMQYNKVKPNERTCGIIISGYCKEGNMTEALRFLYRMKELGVHPNPVVFNSLIK 314



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 111/257 (43%), Gaps = 19/257 (7%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P S     +I    D  KV  A+ + ++M +    P+T T N+++        F +V 
Sbjct: 126 MKPDSILLNAMINAFSDSGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKG------FGIVG 179

Query: 67  RIYP-------MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMY 119
           R Y        M    N+KPN  T+  +I      K  + A+++L  +    + P    Y
Sbjct: 180 RPYESMKLLEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTY 239

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-C--SNEEDIIKYYEQLKS 176
           N +   Y +  + + A  ++ +M+   VKP+ +T   +I   C   N  + +++  ++K 
Sbjct: 240 NTMARAYAQNGETEKAERLILKMQYNKVKPNERTCGIIISGYCKEGNMTEALRFLYRMKE 299

Query: 177 AGGQITKYVFMALINAYTTCGEFEKARQ-VVLDAEIPVKSRSEVKSALVSALASHGRTSD 235
            G      VF +LI  Y    +     + + L  E  +K      S +++A +S G   +
Sbjct: 300 LGVHPNPVVFNSLIKGYLDATDTNGVDEALTLMEEFGIKPDVVTFSTIMNAWSSAGLMDN 359

Query: 236 AIIVYEEIKEAGCNLEP 252
              ++ ++ +AG  +EP
Sbjct: 360 CEEIFNDMVKAG--IEP 374


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 128/295 (43%), Gaps = 10/295 (3%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++ P   +Y  LI   C   K   A +++ +MV   + P T T NSI+    ++ +F   
Sbjct: 256 KVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERA 315

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +  ++   N +P+  T+ ++IS   K ++ D A  L+D+      +P    Y+ +  G
Sbjct: 316 HSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADG 375

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKS--AGGQITK 183
             ++  +  A  ++KEM      P+  T++ LI          K YE L+S  + G +  
Sbjct: 376 LCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPD 435

Query: 184 YV-FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYE 241
            V +  +++     G  +KA ++V        + S +  +AL+  L   GR  +A  +++
Sbjct: 436 VVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFK 495

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY------WMDGCCR 290
           E+    C  +  A ++L+             ++++ +    Y       MDG C+
Sbjct: 496 EMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCK 550



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 126/286 (44%), Gaps = 8/286 (2%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVR 66
           +P + +Y  +I   C       AL+ +++M + ++ P   T N ++   C+ S       
Sbjct: 223 SPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASE 282

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++ M+    + P++ TF S++    K   F+ A+SLL  + E N  P+   YN +++G 
Sbjct: 283 MLHEMV-DRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGL 341

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK--- 183
            ++++V  A  ++ E   +   PD  T+S L         I + +E +K   G+      
Sbjct: 342 CKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNL 401

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEV--KSALVSALASHGRTSDAIIVYE 241
             +  LI+      + EKA + +L++ +      +V   + +V  L   GR   A+ + E
Sbjct: 402 VTYNTLIDGLCKASKTEKAYE-LLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVE 460

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDG 287
            + + GC        AL+E L   G ++    + +E+   D   D 
Sbjct: 461 GMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADA 506



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 117/278 (42%), Gaps = 13/278 (4%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESY---EFNL 64
           PS  +Y  LI+  C    V  A D+V++ V    VP   T + +    C+       F L
Sbjct: 329 PSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFEL 388

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
           V+ +    C     PN  T+ ++I    K    + AY LL+ L     +P    Y  I+ 
Sbjct: 389 VKEMSGKGC----TPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVD 444

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQI 181
           G  ++  +  AL +++ M +    P   T++ L+        + +    ++++ S     
Sbjct: 445 GLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTA 504

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
               +++L+N Y      ++A++VV    I      +V +AL+      GR  +   V+E
Sbjct: 505 DALAYVSLVNGYCKSSRTKEAQKVV--DGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFE 562

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279
           ++   GC    +    +++ L   G+++     LE +H
Sbjct: 563 DMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMH 600



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 90/432 (20%), Positives = 161/432 (37%), Gaps = 64/432 (14%)

Query: 45  STETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLL 104
           ST T N  L    E+   + +  ++  +      P+S T+  +I    ++   D A+++L
Sbjct: 124 STFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTML 183

Query: 105 DDLKEMNLMPTASM-------------------------------YNAIMAGYFRKKDVQ 133
           D  K     P  S+                               YNAI+ G+ RK D  
Sbjct: 184 DKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIPSPDAIAYNAIIHGHCRKNDCD 243

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA---GGQITKYVFMALI 190
           GAL  LKEM +  V PD  T++ LI          K  E L      G       F +++
Sbjct: 244 GALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIM 303

Query: 191 NAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
           +     G+FE+A  ++ + AE   +      + L+S L        A  + +E   +G  
Sbjct: 304 DGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFV 363

Query: 250 LEPRAVIALIEHLNSEGELNRLIQLLEEVHDP---------DYWMDGCCRLILHCVRFKQ 300
            +      L + L   G ++   +L++E+            +  +DG C+         +
Sbjct: 364 PDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKA-------SK 416

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDEL--GLP 358
              A +LL+ L       ++       +  C+    D          L+ ++  L  G  
Sbjct: 417 TEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKA--------LKMVEGMLKRGCT 468

Query: 359 PSRKCLDFLL-GACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASK 417
           PS      L+ G C   R +  AH I+KE  +     + L+Y+ +   +  S   K A K
Sbjct: 469 PSVITYTALMEGLCRTGR-VDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQK 527

Query: 418 LLSKMPKDDPHV 429
           ++  + +  P++
Sbjct: 528 VVDGI-RGTPYI 538



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 84/432 (19%), Positives = 169/432 (39%), Gaps = 20/432 (4%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNL 64
           + T  + +Y  L+   C   +   A  VV+  ++G   P  +  N+++   C+E    + 
Sbjct: 501 DCTADALAYVSLVNGYCKSSRTKEAQKVVDG-IRG--TPYIDVYNALMDGYCKEG-RLDE 556

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
           +  ++  +      PN +T+  ++    K    D A+  L+ +     +P    YN I+ 
Sbjct: 557 IPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIID 616

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQI 181
           G F+    + A  VL +M QA + PD+ T++ L+     EE   D +   + +  AG   
Sbjct: 617 GLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDP 676

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDA--EIPVKSRSEVKSALVSALASHGRTSDAIIV 239
               +  LI+  +       A +++ +      V S     + ++  L   G    A+++
Sbjct: 677 DNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLL 736

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD--GCCRLILHCVR 297
            + +   G           I+ L  EG L+    LL E+   D   D      +I+   +
Sbjct: 737 MDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEM---DTLRDEVSYTTVIIGLCK 793

Query: 298 FKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGL 357
            +QL  A+ L +++        + +  H   +    A T    +   L LL  +  + G 
Sbjct: 794 AEQLDRASKLAREM---VAVKGLCITSHTFNLLID-AFTKTKRLDEALTLLGLMV-QRGC 848

Query: 358 PPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASK 417
            PS    + ++        + +A  ++ E    G+  + +SY  +       G  K A +
Sbjct: 849 SPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQ 908

Query: 418 LLSKMPKDDPHV 429
           +L +M   D  +
Sbjct: 909 VLEEMASSDCEI 920



 Score = 40.4 bits (93), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 61/316 (19%), Positives = 117/316 (37%), Gaps = 73/316 (23%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   SY  +I       K   A  V++QM+Q  + P   T N+++    +   F+    I
Sbjct: 606 PDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGI 665

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDD-LKEMNLMPTASMYNAIMAGYF 127
              +    + P++ T+ ++IS   +      AY L+ + L+   ++   + YN I+    
Sbjct: 666 LKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLC 725

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE----------------EDIIKYY 171
           ++  ++ AL+++  M    V+ ++ T++  I     E                 D + Y 
Sbjct: 726 KEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEVSYT 785

Query: 172 ---------EQLKSA-----------GGQITKYVFMALINAYTTCGEFEKARQVV----- 206
                    EQL  A           G  IT + F  LI+A+T     ++A  ++     
Sbjct: 786 TVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQ 845

Query: 207 ----------------------------LDAEIPVK---SRSEVKSALVSALASHGRTSD 235
                                       L  E+ V+   + S   + L+  L   GR  +
Sbjct: 846 RGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKE 905

Query: 236 AIIVYEEIKEAGCNLE 251
           A+ V EE+  + C ++
Sbjct: 906 ALQVLEEMASSDCEID 921


>gi|302805861|ref|XP_002984681.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
 gi|300147663|gb|EFJ14326.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
          Length = 651

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 110/236 (46%), Gaps = 9/236 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P    Y  L+   C   ++  AL V+E +    L+P+ ET  SIL    +        
Sbjct: 356 LKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKAL 415

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  I    L+P   ++ S++S   K +  ++A  +L+++    ++P+  +Y A+  GY
Sbjct: 416 EVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPSERIYTALTEGY 475

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAG---GQ 180
            R  DV+ A  V + M++ N+  D   +  L+  C N   +    + ++Q+  AG    Q
Sbjct: 476 ARTGDVEKAFGVFQRMKKENLAIDIVAYGALLKACCNSGAMHGAAEVFQQITDAGLKHNQ 535

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSD 235
           IT Y  M L  AY   G  E+A ++V   E    K  + + ++L++A    GR  D
Sbjct: 536 IT-YCTM-LDGAYARAGRVEEAEELVSAMERDGTKPDTLIYNSLINAYGVSGRHED 589



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 83/424 (19%), Positives = 176/424 (41%), Gaps = 46/424 (10%)

Query: 35  EQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKI 94
           E M    + P+     S++HA  E+ +          +    ++ N   F S+IS     
Sbjct: 155 EAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASA 214

Query: 95  KDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTF 154
            + ++A    +  K  NL+P   +YN+I+  Y +  +++    +L +ME+   + +   +
Sbjct: 215 GNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLY 274

Query: 155 SYLIHNCS---NEEDIIKYYEQLKSA-------------------GGQITKYVFMALINA 192
           + +++  +   +EE  + ++ +LK +                   G    K ++  +++ 
Sbjct: 275 TTVLNGFAEIRDEEKCLSFFHRLKVSPQAGNMAKALDILEEMDKHGVSPNKMIYAMIMDG 334

Query: 193 YTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLE 251
           Y   G+F  A +V  D     +K    + + LV A    GR   A+ V E       N+E
Sbjct: 335 YARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLE-------NIE 387

Query: 252 PRAVIALIEHLNS-------EGELNRLIQLLEEVHDPDY--WMDGCCRLILHCVRFKQLS 302
              ++  IE   S        G + + +++ + +        +     L+    + +Q+ 
Sbjct: 388 ANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQME 447

Query: 303 SATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRK 362
           +A  +L ++     +  +  E  ++ +    A T   DV+    + Q +K E  L     
Sbjct: 448 NARLMLNEM---LANGVVPSERIYTALTEGYARTG--DVEKAFGVFQRMKKE-NLAIDIV 501

Query: 363 CLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMY-KAFLASGNRKSASKLLSK 421
               LL AC N+  +  A  ++++  +AGL +N ++Y  M   A+  +G  + A +L+S 
Sbjct: 502 AYGALLKACCNSGAMHGAAEVFQQITDAGLKHNQITYCTMLDGAYARAGRVEEAEELVSA 561

Query: 422 MPKD 425
           M +D
Sbjct: 562 MERD 565



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/248 (20%), Positives = 111/248 (44%), Gaps = 17/248 (6%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L+++P + +  K             ALD++E+M +  + P+      I+       +F 
Sbjct: 296 RLKVSPQAGNMAK-------------ALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFT 342

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              +++  +    LKP+   +  ++    K    D A  +L++++   L+PT   Y +I+
Sbjct: 343 AAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSIL 402

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQ 180
            GY +  ++Q AL V   ++ A ++P   +++ L+   +     E+      ++ + G  
Sbjct: 403 DGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVV 462

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIV 239
            ++ ++ AL   Y   G+ EKA  V    +    +   V   AL+ A  + G    A  V
Sbjct: 463 PSERIYTALTEGYARTGDVEKAFGVFQRMKKENLAIDIVAYGALLKACCNSGAMHGAAEV 522

Query: 240 YEEIKEAG 247
           +++I +AG
Sbjct: 523 FQQITDAG 530



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 100/256 (39%), Gaps = 21/256 (8%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  ++P+   Y  ++           A  V E MV   L P     N ++HA  ++   +
Sbjct: 318 KHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMD 377

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               +   I  + L P  ET+ S++   VK  +   A  + D +K   L P    YN+++
Sbjct: 378 KALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLL 437

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQ 180
           +G  + + ++ A ++L EM    V P  + ++ L    +   D+ K    ++++K     
Sbjct: 438 SGLAKARQMENARLMLNEMLANGVVPSERIYTALTEGYARTGDVEKAFGVFQRMKKENLA 497

Query: 181 ITKYVFMALINAYTTCGEFEKARQV------------------VLDAEIPVKSRSEVKSA 222
           I    + AL+ A    G    A +V                  +LD       R E    
Sbjct: 498 IDIVAYGALLKACCNSGAMHGAAEVFQQITDAGLKHNQITYCTMLDGAYARAGRVEEAEE 557

Query: 223 LVSALASHGRTSDAII 238
           LVSA+   G   D +I
Sbjct: 558 LVSAMERDGTKPDTLI 573



 Score = 38.9 bits (89), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 24/136 (17%), Positives = 58/136 (42%), Gaps = 3/136 (2%)

Query: 78  KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALM 137
           KP    +  ++    +  D  +A +  + ++  ++ P   +Y +++  Y   +D++GA+ 
Sbjct: 128 KPVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVA 187

Query: 138 VLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYT 194
             +EM    ++ +   F  +I       N E    ++E+ K+        V+ +++ AY 
Sbjct: 188 CTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYC 247

Query: 195 TCGEFEKARQVVLDAE 210
             G  E    ++   E
Sbjct: 248 QAGNMETVEALLAQME 263


>gi|255546465|ref|XP_002514292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546748|gb|EEF48246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 608

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 122/278 (43%), Gaps = 7/278 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  L+   C    +  A +V+ +MV   + P   T N +  A  +  E     
Sbjct: 195 VKPNDRTYNILVRAWCSKKNIEEAWNVLHKMVASGIQPDVVTYNILARAYAQKGETLRAE 254

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   + +  + PN  T   +++   K  +   A   +  +KE+ + P   ++N+++ G+
Sbjct: 255 DLILEMQYEKVAPNERTCGIIVNGYCKEGNMIEALRFVYRMKELGVHPNLVIFNSLIKGF 314

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITK 183
               D  G    L  ME+  VKPD  TFS +++  S+   + K    +  +  AG +   
Sbjct: 315 LDITDTDGVDEALTLMEEYGVKPDVITFSTIMNAWSSAGLMDKCQEIFNDMAKAGIEPDI 374

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           + F  L   Y   GE E A  V+   A+  V+    + + ++S   S G+  +A +VYE+
Sbjct: 375 HAFSILAKGYVRAGETENAESVLTSMAKSGVRPNVVICTTIISGWCSAGKMENAKMVYEK 434

Query: 243 IKEAGCNLEPRAVIALI---EHLNSEGELNRLIQLLEE 277
           + E G +   +    LI         G+   L+QL+EE
Sbjct: 435 MCEIGISPNLKTFETLIWGYAEARQPGKAEELLQLMEE 472



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 78/392 (19%), Positives = 170/392 (43%), Gaps = 39/392 (9%)

Query: 43  VPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYS 102
           V S   + +IL    + +E NL   I+  +     +P   T+ ++++   K+K F+S + 
Sbjct: 58  VHSRTKLMNILIGKGKPHEANL---IFDNLVEDGHRPTLITYTTLVAALTKLKHFESIFL 114

Query: 103 LLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS 162
           L+  ++E  + P + +YNA++  +    +V+ A+ + ++M+    KP + TF+ LI    
Sbjct: 115 LISKVEENGMKPDSILYNAMINAFSESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIKGYG 174

Query: 163 NEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSA 222
           N     K  E LK           + L++   +    ++   +++ A    K+  E  + 
Sbjct: 175 NAG---KPEEGLK----------MLHLMSLDGSVKPNDRTYNILVRAWCSKKNIEEAWNV 221

Query: 223 LVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPD 282
           L   +AS G   D ++ Y        N+  RA     E L +E   + ++++  E   P+
Sbjct: 222 LHKMVAS-GIQPD-VVTY--------NILARAYAQKGETLRAE---DLILEMQYEKVAPN 268

Query: 283 YWMDGCCRLILHC-VRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDV 341
              +  C +I++   +   +  A   + ++K+      + +     + F  I  TD    
Sbjct: 269 ---ERTCGIIVNGYCKEGNMIEALRFVYRMKELGVHPNLVIFNSLIKGFLDITDTD---- 321

Query: 342 QIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLW 401
             G+D    + +E G+ P       ++ A  +A  + +   I+ +   AG+  ++ ++  
Sbjct: 322 --GVDEALTLMEEYGVKPDVITFSTIMNAWSSAGLMDKCQEIFNDMAKAGIEPDIHAFSI 379

Query: 402 MYKAFLASGNRKSASKLLSKMPKDDPHVRFVI 433
           + K ++ +G  ++A  +L+ M K       VI
Sbjct: 380 LAKGYVRAGETENAESVLTSMAKSGVRPNVVI 411



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 57/262 (21%), Positives = 111/262 (42%), Gaps = 18/262 (6%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           K H A  + + +V+    P+  T  +++ A  +   F  +  +   +  + +KP+S  + 
Sbjct: 73  KPHEANLIFDNLVEDGHRPTLITYTTLVAALTKLKHFESIFLLISKVEENGMKPDSILYN 132

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME-Q 144
           +MI+   +  +   A  +   +K+    PT S +N ++ GY      +  L +L  M   
Sbjct: 133 AMINAFSESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIKGYGNAGKPEEGLKMLHLMSLD 192

Query: 145 ANVKPDSQTFSYLIHN-CS--NEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEK 201
            +VKP+ +T++ L+   CS  N E+      ++ ++G Q     +  L  AY   GE  +
Sbjct: 193 GSVKPNDRTYNILVRAWCSKKNIEEAWNVLHKMVASGIQPDVVTYNILARAYAQKGETLR 252

Query: 202 ARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE 260
           A  ++L+ +   V         +V+     G   +A+     +KE G  + P  VI    
Sbjct: 253 AEDLILEMQYEKVAPNERTCGIIVNGYCKEGNMIEALRFVYRMKELG--VHPNLVI---- 306

Query: 261 HLNSEGELNRLIQLLEEVHDPD 282
                   N LI+   ++ D D
Sbjct: 307 -------FNSLIKGFLDITDTD 321



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/249 (19%), Positives = 111/249 (44%), Gaps = 7/249 (2%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYE-FNLVRR 67
           P S  Y  +I    +   V  A+ + ++M      P+T T N+++     + +    ++ 
Sbjct: 126 PDSILYNAMINAFSESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIKGYGNAGKPEEGLKM 185

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           ++ M    ++KPN  T+  ++      K+ + A+++L  +    + P    YN +   Y 
Sbjct: 186 LHLMSLDGSVKPNDRTYNILVRAWCSKKNIEEAWNVLHKMVASGIQPDVVTYNILARAYA 245

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKY 184
           +K +   A  ++ EM+   V P+ +T   +++    E ++I   ++  ++K  G      
Sbjct: 246 QKGETLRAEDLILEMQYEKVAPNERTCGIIVNGYCKEGNMIEALRFVYRMKELGVHPNLV 305

Query: 185 VFMALINAYTTCGEFEKARQ-VVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
           +F +LI  +    + +   + + L  E  VK      S +++A +S G       ++ ++
Sbjct: 306 IFNSLIKGFLDITDTDGVDEALTLMEEYGVKPDVITFSTIMNAWSSAGLMDKCQEIFNDM 365

Query: 244 KEAGCNLEP 252
            +AG  +EP
Sbjct: 366 AKAG--IEP 372



 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 13/156 (8%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  L+     L        ++ ++ +  + P +   N++++A  ES       +I
Sbjct: 91  PTLITYTTLVAALTKLKHFESIFLLISKVEENGMKPDSILYNAMINAFSESGNVKEAMKI 150

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLM-------PTASMYNA 121
           +  +     KP + TF      N  IK + +A    + LK ++LM       P    YN 
Sbjct: 151 FQKMKDTGCKPTTSTF------NTLIKGYGNAGKPEEGLKMLHLMSLDGSVKPNDRTYNI 204

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYL 157
           ++  +  KK+++ A  VL +M  + ++PD  T++ L
Sbjct: 205 LVRAWCSKKNIEEAWNVLHKMVASGIQPDVVTYNIL 240



 Score = 42.7 bits (99), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 39/204 (19%), Positives = 87/204 (42%), Gaps = 3/204 (1%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++ P+  +   ++   C    +  AL  V +M +  + P+    NS++    +  + + V
Sbjct: 264 KVAPNERTCGIIVNGYCKEGNMIEALRFVYRMKELGVHPNLVIFNSLIKGFLDITDTDGV 323

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
                ++  + +KP+  TF ++++        D    + +D+ +  + P    ++ +  G
Sbjct: 324 DEALTLMEEYGVKPDVITFSTIMNAWSSAGLMDKCQEIFNDMAKAGIEPDIHAFSILAKG 383

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CS--NEEDIIKYYEQLKSAGGQIT 182
           Y R  + + A  VL  M ++ V+P+    + +I   CS    E+    YE++   G    
Sbjct: 384 YVRAGETENAESVLTSMAKSGVRPNVVICTTIISGWCSAGKMENAKMVYEKMCEIGISPN 443

Query: 183 KYVFMALINAYTTCGEFEKARQVV 206
              F  LI  Y    +  KA +++
Sbjct: 444 LKTFETLIWGYAEARQPGKAEELL 467


>gi|115461911|ref|NP_001054555.1| Os05g0132000 [Oryza sativa Japonica Group]
 gi|52353663|gb|AAU44229.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113578106|dbj|BAF16469.1| Os05g0132000 [Oryza sativa Japonica Group]
 gi|125550727|gb|EAY96436.1| hypothetical protein OsI_18334 [Oryza sativa Indica Group]
          Length = 637

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 117/269 (43%), Gaps = 10/269 (3%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           E  P  ASY  ++   C   ++     VV +MVQ  L P+  T  +I+ A  ++ E  + 
Sbjct: 217 ETVPVQASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMA 276

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             I   +      PN  TF +++    +      A S+   + +    P+   YN ++ G
Sbjct: 277 CAILARMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRG 336

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQIT 182
                D++GAL     M++  + P++ T+S L+   SN  D+   +  + ++KS+G +  
Sbjct: 337 LCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPN 396

Query: 183 KYVFMALINAYTTCGEFEKARQVV----LDAEIPVKSRSEVKSALVSALASHGRTSDAII 238
             V+  +I+       F++A  ++    +D   P    +   + L+  L   GR   A+ 
Sbjct: 397 VVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPP---NTVTFNTLIGRLCDCGRVGRALN 453

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
           V+  ++  GC+   R    L+  L  EG 
Sbjct: 454 VFHGMRRNGCHPNDRTYNELLHGLFREGN 482



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 126/282 (44%), Gaps = 15/282 (5%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           PS+ SY  LI   C +  +  ALD    M +  L+P+  T ++++     + + +    I
Sbjct: 325 PSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLI 384

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +     KPN   + +MI +  K   FD A SL+D +   N  P    +N ++     
Sbjct: 385 WNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCD 444

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKYV 185
              V  AL V   M +    P+ +T++ L+H      N +D      ++ + G +++   
Sbjct: 445 CGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVT 504

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKS---RSEVKSALVSALASHGRTSDAIIVYEE 242
           +  +IN    C    +   ++L   + V+     +   +A++ A    G+ S A  +  +
Sbjct: 505 YNTVINCL--CQMCMRKHAMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLLGQ 562

Query: 243 IKEAGCNLEPRAVIA---LIEHLNSEGEL-NRLIQLLEEVHD 280
           +    C   PR V+A   LI  L ++G+L N ++ LL+ +++
Sbjct: 563 MNAVNC---PRNVVAYTILISELCNQGKLSNAMVYLLKMLYE 601


>gi|147812173|emb|CAN61517.1| hypothetical protein VITISV_033966 [Vitis vinifera]
          Length = 635

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 114/246 (46%), Gaps = 6/246 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  L+   C+   +  A +VV +MV   L P   T N+I  A  ++ E +   
Sbjct: 209 VRPNLRTYNVLVRAWCNKXNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAE 268

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            I   + + N++PN  T   +I    K      A   +  +K++ L P   ++N+++ G+
Sbjct: 269 GIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGF 328

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITK 183
               D  G   VL  ME+  VKPD  TFS +++  S    + K    ++ +  A  Q   
Sbjct: 329 IDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDA 388

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK--SALVSALASHGRTSDAIIVYE 241
           +V+  L   Y   GE EKA + +L+A I       V   + +++   S GR   AI ++E
Sbjct: 389 HVYSILAKGYVRAGEPEKAEE-ILNAMIKSGFHPNVVMFTTIINGWCSAGRMEYAIKIFE 447

Query: 242 EIKEAG 247
           ++ E G
Sbjct: 448 KMCECG 453



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/256 (21%), Positives = 122/256 (47%), Gaps = 14/256 (5%)

Query: 33  VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92
           +++ +++G   PS  T  ++L A      F+ +  I   +  + ++P+S  F ++I+   
Sbjct: 94  ILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAVINAFS 153

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQ-ANVKPDS 151
           +  +   A      +KE    PT S +N ++ GY    + + +  +L+ M Q  NV+P+ 
Sbjct: 154 ESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLZLMSQDENVRPNL 213

Query: 152 QTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
           +T++ L+    N+ +I+K +    ++ ++G Q     +  +  AY   GE  +A  ++L+
Sbjct: 214 RTYNVLVRAWCNKXNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILE 273

Query: 209 AEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI------ALIEH 261
            +   V+        ++      G+  +A+     +K+ G  L+P  V+        I+ 
Sbjct: 274 MQNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLG--LQPNLVVFNSLIKGFIDA 331

Query: 262 LNSEGELNRLIQLLEE 277
           ++ +G +N ++ L+EE
Sbjct: 332 VDRDG-VNEVLTLMEE 346


>gi|296081889|emb|CBI20894.3| unnamed protein product [Vitis vinifera]
          Length = 608

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 114/246 (46%), Gaps = 6/246 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  L+   C+   +  A +VV +MV   L P   T N+I  A  ++ E +   
Sbjct: 209 VRPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAE 268

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            I   + + N++PN  T   +I    K      A   +  +K++ L P   ++N+++ G+
Sbjct: 269 GIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGF 328

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITK 183
               D  G   VL  ME+  VKPD  TFS +++  S    + K    ++ +  A  Q   
Sbjct: 329 IDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDA 388

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK--SALVSALASHGRTSDAIIVYE 241
           +V+  L   Y   GE EKA + +L+A I       V   + +++   S GR   AI ++E
Sbjct: 389 HVYSILAKGYVRAGEPEKAEE-ILNAMIKSGFHPNVVIFTTIINGWCSAGRMEYAIKIFE 447

Query: 242 EIKEAG 247
           ++ E G
Sbjct: 448 KMCECG 453



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/256 (21%), Positives = 123/256 (48%), Gaps = 14/256 (5%)

Query: 33  VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92
           +++ +++G   PS  T  ++L A      F+ +  I   +  + ++P+S  F ++I+   
Sbjct: 94  ILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAVINAFS 153

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQ-ANVKPDS 151
           +  +   A      +KE    PT S +N ++ GY    + + +  +L+ M Q  NV+P+ 
Sbjct: 154 ESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLELMSQDENVRPNL 213

Query: 152 QTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
           +T++ L+    N+++I+K +    ++ ++G Q     +  +  AY   GE  +A  ++L+
Sbjct: 214 RTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILE 273

Query: 209 AEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI------ALIEH 261
            +   V+        ++      G+  +A+     +K+ G  L+P  V+        I+ 
Sbjct: 274 MQNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLG--LQPNLVVFNSLIKGFIDA 331

Query: 262 LNSEGELNRLIQLLEE 277
           ++ +G +N ++ L+EE
Sbjct: 332 VDRDG-VNEVLTLMEE 346


>gi|222630089|gb|EEE62221.1| hypothetical protein OsJ_17008 [Oryza sativa Japonica Group]
          Length = 584

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 117/269 (43%), Gaps = 10/269 (3%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           E  P  ASY  ++   C   ++     VV +MVQ  L P+  T  +I+ A  ++ E  + 
Sbjct: 164 ETVPVQASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMA 223

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             I   +      PN  TF +++    +      A S+   + +    P+   YN ++ G
Sbjct: 224 CAILARMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRG 283

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQIT 182
                D++GAL     M++  + P++ T+S L+   SN  D+   +  + ++KS+G +  
Sbjct: 284 LCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPN 343

Query: 183 KYVFMALINAYTTCGEFEKARQVV----LDAEIPVKSRSEVKSALVSALASHGRTSDAII 238
             V+  +I+       F++A  ++    +D   P    +   + L+  L   GR   A+ 
Sbjct: 344 VVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPP---NTVTFNTLIGRLCDCGRVGRALN 400

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
           V+  ++  GC+   R    L+  L  EG 
Sbjct: 401 VFHGMRRNGCHPNDRTYNELLHGLFREGN 429



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 126/283 (44%), Gaps = 15/283 (5%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
            PS+ SY  LI   C +  +  ALD    M +  L+P+  T ++++     + + +    
Sbjct: 271 APSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAML 330

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           I+  +     KPN   + +MI +  K   FD A SL+D +   N  P    +N ++    
Sbjct: 331 IWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLC 390

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKY 184
               V  AL V   M +    P+ +T++ L+H      N +D      ++ + G +++  
Sbjct: 391 DCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLV 450

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKS---RSEVKSALVSALASHGRTSDAIIVYE 241
            +  +IN    C    +   ++L   + V+     +   +A++ A    G+ S A  +  
Sbjct: 451 TYNTVINCL--CQMCMRKHAMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLLG 508

Query: 242 EIKEAGCNLEPRAVIA---LIEHLNSEGEL-NRLIQLLEEVHD 280
           ++    C   PR V+A   LI  L ++G+L N ++ LL+ +++
Sbjct: 509 QMNAVNC---PRNVVAYTILISELCNQGKLSNAMVYLLKMLYE 548


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 113/244 (46%), Gaps = 4/244 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  +I   C L +   AL++ ++M +    P+  T   ++ +  E   F+  ++I
Sbjct: 307 PTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKI 366

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    L P+  T+ ++I    K     SA  +L  ++  N  P A  YN ++ G+ R
Sbjct: 367 LNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCR 426

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQL---KSAGGQITKYV 185
            K++  A+ +L +M +  ++P+  T++ LIH    E D+   Y+ L     +G    ++ 
Sbjct: 427 GKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWT 486

Query: 186 FMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +   I+     G  E+AR +     E  +K+   + S L+      G+ SD   + +++ 
Sbjct: 487 YSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKML 546

Query: 245 EAGC 248
            AGC
Sbjct: 547 SAGC 550



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/297 (19%), Positives = 133/297 (44%), Gaps = 41/297 (13%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEES------- 59
           +P++ +Y +LI   C    +H A+ ++ +M++ +L P+  T N ++H  C+E        
Sbjct: 411 SPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYK 470

Query: 60  -----YEFNLV----------------------RRIYPMICHHNLKPNSETFRSMISLNV 92
                 E  LV                      R ++  +    +K N   + ++I    
Sbjct: 471 LLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYC 530

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
           K+        LLD +     +P +  YN+++ GY ++K+ + A +++  M + +++P + 
Sbjct: 531 KVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAAD 590

Query: 153 TFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV--L 207
           T++ LI N   +++  +    ++Q+ S G     +++ A I+AY + G  + A  ++  +
Sbjct: 591 TYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKM 650

Query: 208 DAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
           +A+  +   + + +  + A    G    A  + + + E GC         LI+HL++
Sbjct: 651 NAK-GIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLSN 706



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/152 (21%), Positives = 71/152 (46%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I  +   Y  LI   C + KV     ++++M+    VP++ T NS++    +   F   R
Sbjct: 515 IKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEAR 574

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +  ++   +++P ++T+  +I   +K  +FD A+ + D +      P   +Y A +  Y
Sbjct: 575 LLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAY 634

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
                ++ A +++ +M    + PD+  ++  I
Sbjct: 635 CSHGRLKDAEVLICKMNAKGIMPDTMLYTLFI 666



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 62/288 (21%), Positives = 114/288 (39%), Gaps = 12/288 (4%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           +TP+  +   ++   C L  V  A   V ++VQ  L   T T  S++     +   +   
Sbjct: 200 VTPNIFTLNTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAAN 259

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            I+  + +     N  ++ ++I    + +  D A  L   + E N  PT   Y  I+   
Sbjct: 260 AIFLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFAL 319

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITK 183
            +      AL + KEM + + +P+  T++ LI +    SN +D  K    +   G   + 
Sbjct: 320 CQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSV 379

Query: 184 YVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             + ALI+ Y   G    A +++ L         +   + L+           A+ +  +
Sbjct: 380 VTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHK 439

Query: 243 IKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHD----PDYW 284
           + E    L+P  V    LI     EG+L    +LL  +++    PD W
Sbjct: 440 MLER--KLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEW 485


>gi|225430029|ref|XP_002281569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g25630-like [Vitis vinifera]
          Length = 635

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 114/246 (46%), Gaps = 6/246 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  L+   C+   +  A +VV +MV   L P   T N+I  A  ++ E +   
Sbjct: 209 VRPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAE 268

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            I   + + N++PN  T   +I    K      A   +  +K++ L P   ++N+++ G+
Sbjct: 269 GIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGF 328

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITK 183
               D  G   VL  ME+  VKPD  TFS +++  S    + K    ++ +  A  Q   
Sbjct: 329 IDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDA 388

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK--SALVSALASHGRTSDAIIVYE 241
           +V+  L   Y   GE EKA + +L+A I       V   + +++   S GR   AI ++E
Sbjct: 389 HVYSILAKGYVRAGEPEKAEE-ILNAMIKSGFHPNVVIFTTIINGWCSAGRMEYAIKIFE 447

Query: 242 EIKEAG 247
           ++ E G
Sbjct: 448 KMCECG 453



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/256 (21%), Positives = 123/256 (48%), Gaps = 14/256 (5%)

Query: 33  VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92
           +++ +++G   PS  T  ++L A      F+ +  I   +  + ++P+S  F ++I+   
Sbjct: 94  ILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAVINAFS 153

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQ-ANVKPDS 151
           +  +   A      +KE    PT S +N ++ GY    + + +  +L+ M Q  NV+P+ 
Sbjct: 154 ESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLELMSQDENVRPNL 213

Query: 152 QTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
           +T++ L+    N+++I+K +    ++ ++G Q     +  +  AY   GE  +A  ++L+
Sbjct: 214 RTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILE 273

Query: 209 AEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI------ALIEH 261
            +   V+        ++      G+  +A+     +K+ G  L+P  V+        I+ 
Sbjct: 274 MQNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLG--LQPNLVVFNSLIKGFIDA 331

Query: 262 LNSEGELNRLIQLLEE 277
           ++ +G +N ++ L+EE
Sbjct: 332 VDRDG-VNEVLTLMEE 346


>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
 gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 141/313 (45%), Gaps = 21/313 (6%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +I+    +     A+ +  +M +    P   T+ S+L AC +  +  L R +   +
Sbjct: 196 SWNSMISGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFV 255

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               ++ NS    ++I +  K  D  SA  + D +   +++     +NAI+ GY +    
Sbjct: 256 LEKKMEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVT----WNAIITGYAQNGAS 311

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCS--NEEDIIKYYEQLKSAGG-QITKYVFMAL 189
             A+++   M +A   PD  T   ++  CS     D+ K+ E   S  G Q   YV  AL
Sbjct: 312 NEAIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQHDVYVASAL 371

Query: 190 INAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGC 248
           I+ Y  CG  + A +V     +P K  +EV  +A++SALA HG+  +A+ ++  + +   
Sbjct: 372 IDMYAKCGSLDDAVRVF--ESMPHK--NEVSWNAMISALAFHGQAQEALSLFRRMSKDNG 427

Query: 249 NLEPRAV--IALIEHLNSEGELNRLIQLLEEVH-----DPDYWMDGCCRLILHCVRFKQL 301
            ++P  +  I ++      G ++   QL E ++      P      C  ++  C R   L
Sbjct: 428 TVQPNDITFIGVLSACVHAGLVDEGRQLFESMNLSFGLVPKVEHYSC--MVDLCARAGLL 485

Query: 302 SSATDLLKQLKDK 314
             A DL+K++  K
Sbjct: 486 YEAWDLIKKMPGK 498



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 96/187 (51%), Gaps = 10/187 (5%)

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           S+I++  +  +   A  + D++ + +L+     +N++++GY +    + A+ +  EM + 
Sbjct: 168 SLITMYARCGEMGFARKVFDEMGDRDLVS----WNSMISGYSKMGFTKEAIGLFMEMREE 223

Query: 146 NVKPDSQTFSYLIHNCSNEED--IIKYYEQLK-SAGGQITKYVFMALINAYTTCGEFEKA 202
             +PD  T   ++  C +  D  + ++ E        ++  Y+  ALI+ Y  CG+   A
Sbjct: 224 GFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISA 283

Query: 203 RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
           R+V     +P K      +A+++  A +G +++AI+++  ++EAG + +   +I ++   
Sbjct: 284 RRVF--DSMPNKD-VVTWNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSAC 340

Query: 263 NSEGELN 269
           ++ G L+
Sbjct: 341 STIGALD 347



 Score = 46.2 bits (108), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 110/231 (47%), Gaps = 23/231 (9%)

Query: 46  TETINSILHACEESYEFNLVRRIYP-MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLL 104
           TE + S++  C+     NL+++I+  M+ +   KPN      ++S  + +KD   A  + 
Sbjct: 33  TEKLLSLIKQCKSK---NLLKQIHAQMLINSIPKPNF-----LLSKIIDLKDLAYASLVF 84

Query: 105 DDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE 164
           + L + N+     M    +A  ++K D    + +  +++   +K ++ T+ +L   C N 
Sbjct: 85  NQLTKPNIYAFNVMLRG-LATTWKKYDF--CVELYYKLKSLGLKANNFTYPFLFIACGNV 141

Query: 165 EDIIKY---YEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK- 220
             ++     +  +  AG    +YV  +LI  Y  CGE   AR+V  +    +  R  V  
Sbjct: 142 RGLVHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVFDE----MGDRDLVSW 197

Query: 221 SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRL 271
           ++++S  +  G T +AI ++ E++E G   EP   + L+  L + G+L  L
Sbjct: 198 NSMISGYSKMGFTKEAIGLFMEMREEG--FEPDE-MTLVSVLGACGDLGDL 245


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 103/239 (43%), Gaps = 12/239 (5%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           ++  LI     +  V  A  +  QMV   L PS  T  S+L AC      N  + ++  +
Sbjct: 125 TWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQV 184

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
                  +     +++S+ VK    D A  + D L     +   S +N ++ GY +  D 
Sbjct: 185 VTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLH----IRDVSTFNVMVGGYAKSGDW 240

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMAL 189
           + A  +   M+Q  +KP+  +F  ++  C   E +      + Q  +AG      V  +L
Sbjct: 241 EKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSL 300

Query: 190 INAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAG 247
           I  YTTCG  E AR+V  +    +K R  V  + ++   A +G   DA  ++  ++E G
Sbjct: 301 IRMYTTCGSIEGARRVFDN----MKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEG 355



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 112/247 (45%), Gaps = 17/247 (6%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A ++  +M Q  L P+  +  SIL  C         + ++    +  L  +     S+I 
Sbjct: 243 AFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIR 302

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +       + A  + D++K  +++     +  ++ GY    +++ A  +   M++  ++P
Sbjct: 303 MYTTCGSIEGARRVFDNMKVRDVVS----WTVMIEGYAENGNIEDAFGLFATMQEEGIQP 358

Query: 150 DSQTFSYLIHNCS---NEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D  T+ ++++ C+   N     + + Q+  AG      V  AL++ Y  CG  + ARQ V
Sbjct: 359 DRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQ-V 417

Query: 207 LDAEIPVKSRSEV--KSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
            DA +P   R +V   SA++ A   +G  ++A   +  +K +  N+EP  V   I  LN+
Sbjct: 418 FDA-MP---RRDVVSWSAMIGAYVENGYGTEAFETFHLMKRS--NIEPDGV-TYINLLNA 470

Query: 265 EGELNRL 271
            G L  L
Sbjct: 471 CGHLGAL 477



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 77/427 (18%), Positives = 168/427 (39%), Gaps = 24/427 (5%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
             L++   SA ++   T          A DV++++ +G     + T   +   C E  + 
Sbjct: 20  GSLQLPVPSARFRSTFTRRVG------ANDVLQRLGEGGNHIDSRTYVKLFQRCTELRDA 73

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
            L +++   I     + N     ++I L     +   A  + D ++      T   +NA+
Sbjct: 74  ALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVEN----KTVVTWNAL 129

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGG 179
           +AGY +   V+ A  + ++M    ++P   TF  ++  CS+   +    + + Q+ +AG 
Sbjct: 130 IAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGF 189

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
                +  AL++ Y   G  + ARQV     I   S   V   +V   A  G    A  +
Sbjct: 190 VSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNV---MVGGYAKSGDWEKAFEL 246

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFK 299
           +  +++ G      + +++++   +   L     +  +  +     D   R+    +R  
Sbjct: 247 FYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDD--IRVATSLIRMY 304

Query: 300 QLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPP 359
               + +  +++ D  K  ++       E + +       +++    L   +++E G+ P
Sbjct: 305 TTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAE-----NGNIEDAFGLFATMQEE-GIQP 358

Query: 360 SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLL 419
            R     ++ AC  + +L  A  I  + + AG   ++L    +   +   G  K A ++ 
Sbjct: 359 DRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVF 418

Query: 420 SKMPKDD 426
             MP+ D
Sbjct: 419 DAMPRRD 425



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 92/206 (44%), Gaps = 10/206 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A +    M +  + P   T  ++L+AC      ++   IY      +L  +     ++I 
Sbjct: 445 AFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALII 504

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +N K    + A  + D +   +++     +NA++ GY    + + AL +   M +   +P
Sbjct: 505 MNAKHGSVERARYIFDTMVRRDVIT----WNAMIGGYSLHGNAREALYLFDRMLKERFRP 560

Query: 150 DSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQI-TKYVFMALINAYTTCGEFEKARQV 205
           +S TF  ++  CS     ++  +++  L    G + T  ++  +++     GE ++A   
Sbjct: 561 NSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAE-- 618

Query: 206 VLDAEIPVKSRSEVKSALVSALASHG 231
           +L   +PVK  S + S+L+ A   HG
Sbjct: 619 LLIKSMPVKPTSSIWSSLLVACRIHG 644


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 114/247 (46%), Gaps = 4/247 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  LI    +  K+  A+ + ++MV   L P+  T N++++   +       R
Sbjct: 304 LKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEAR 363

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++  I   +L PN+ TF +MI    K    +  ++L + + +  + P  S YN ++AG 
Sbjct: 364 KLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGL 423

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE--DIIKYYEQLKSAGGQITK 183
            R ++V+ A  +L EME   +K D  T++ LI   C + E     K   ++ + G +   
Sbjct: 424 CRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNH 483

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEE 242
             +  L++ Y   G  + A +V    E   K  + V  + L+      G+  DA  +  E
Sbjct: 484 VTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDANRLLNE 543

Query: 243 IKEAGCN 249
           + E G N
Sbjct: 544 MLEKGLN 550



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 96/447 (21%), Positives = 196/447 (43%), Gaps = 36/447 (8%)

Query: 25  LKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETF 84
           L++H A +V  ++       S  + N +L A  +  E   ++ +Y  +    ++PN  TF
Sbjct: 144 LEIHSACEVFRRVQDYGFKLSLNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTF 203

Query: 85  RSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQG---ALMVLKE 141
              I+   K    + A  +++D+K     P    YN ++ G+ +K        A  +LKE
Sbjct: 204 NIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKE 263

Query: 142 MEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINAYTTCGE 198
           M    + P+  TF+ LI     +E+++     +E+++  G +     + +LIN  +  G+
Sbjct: 264 MLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGK 323

Query: 199 FEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI 256
            ++A   + D  + +  +  + +  AL++         +A  ++++I E   +L P A+ 
Sbjct: 324 LDEA-IALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQ--DLVPNAIT 380

Query: 257 --ALIEHLNSEGELNRLIQL----LEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQ 310
              +I+     G +     L    L+E   P+     C  LI    R + + +A  LL +
Sbjct: 381 FNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNC--LIAGLCRNQNVRAAKKLLNE 438

Query: 311 LKD-KFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLL- 368
           +++ + K D +         +C+       +  +G  L       +G+ P+    + L+ 
Sbjct: 439 MENYELKADVVTYNILIGG-WCKDGEPSKAEKLLGEML------NVGVKPNHVTYNTLMD 491

Query: 369 GACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPH 428
           G C+   +LK A  +  + E  G   NV++Y  + K F  +G  + A++LL++M +    
Sbjct: 492 GYCMEG-NLKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKG-- 548

Query: 429 VRFVIQACKQTYTIPSLQK-ERGFEKD 454
               +   + TY +  L+  E+GF  D
Sbjct: 549 ----LNPNRTTYDVVRLEMLEKGFIPD 571



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/205 (20%), Positives = 94/205 (45%), Gaps = 3/205 (1%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           L + P+  ++  LI   C    +  A  + + + + +LVP+  T N+++ A  ++     
Sbjct: 337 LGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEE 396

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
              ++  +    + PN  T+  +I+   + ++  +A  LL++++   L      YN ++ 
Sbjct: 397 GFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIG 456

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQI 181
           G+ +  +   A  +L EM    VKP+  T++ L+     E ++   +K   Q++  G + 
Sbjct: 457 GWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRA 516

Query: 182 TKYVFMALINAYTTCGEFEKARQVV 206
               +  LI  +   G+ E A +++
Sbjct: 517 NVVTYNVLIKGFCKTGKLEDANRLL 541



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 77/155 (49%), Gaps = 3/155 (1%)

Query: 7   ITPSSASYKKLITYSC---DLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
            +P+  +Y  LI   C      K++ A  ++++M+  ++ P+  T N+++    +     
Sbjct: 231 FSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLANKICPNEITFNTLIDGFCKDENVL 290

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             +  +  +    LKPN  T+ S+I+        D A +L D +  + L P    +NA++
Sbjct: 291 AAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALI 350

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            G+ +KK ++ A  +  ++ + ++ P++ TF+ +I
Sbjct: 351 NGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMI 385



 Score = 46.6 bits (109), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 30/156 (19%), Positives = 71/156 (45%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           A+ ++ P++ ++  +I   C    +     +   M+   + P+  T N ++     +   
Sbjct: 370 AEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNV 429

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
              +++   + ++ LK +  T+  +I    K  +   A  LL ++  + + P    YN +
Sbjct: 430 RAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTL 489

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
           M GY  + +++ AL V  +ME+   + +  T++ LI
Sbjct: 490 MDGYCMEGNLKAALKVRTQMEKEGKRANVVTYNVLI 525


>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 804

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 85/449 (18%), Positives = 187/449 (41%), Gaps = 42/449 (9%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           KL   P+ A++  LI   C   K   AL + ++M Q  ++P+  T   I+    ++ + +
Sbjct: 189 KLNCLPNIATFSILIDGMCKSGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQKAD 248

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
           +  R++  +  H   P+S T+ +++    K+   D A  LL   ++   +     Y+ ++
Sbjct: 249 VAYRLFIAMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCLI 308

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQ 180
            G FR +  + A +  ++M + N+KPD   ++ ++   S     +D ++   ++   G  
Sbjct: 309 DGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLV 368

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
              + + ALI  Y   G  ++A+ + L+ ++    S +   + L+  +   G   DA  +
Sbjct: 369 PDTHCYNALIKGYCDLGLLDEAKSLHLEISKNDCFSSACTYTILICGMCRSGLVGDAQQI 428

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNR---LIQLLEEVHDPDYWMDGCCRLILHCV 296
           + E+++ GC        ALI+     G + +   L   +E   +P  ++    RL     
Sbjct: 429 FNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKMEIGRNPSLFL----RLSQGAN 484

Query: 297 RFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELG 356
           R    +S   +++QL D        +      I  Q+  +                   G
Sbjct: 485 RVLDTASLQTMVEQLCDS------GLILKAYNILMQLTDS-------------------G 519

Query: 357 LPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSAS 416
             P+    + L+     A ++  A  ++KE +  GL  + ++Y  +    L++   + A 
Sbjct: 520 FAPNIITYNILIHGFCKAGNINGAFKLFKELQLKGLSPDSVTYGTLINGLLSANREEDAF 579

Query: 417 KLLSKM------PKDDPHVRFVIQACKQT 439
            +L ++      P  + +  F+  +C++ 
Sbjct: 580 TVLDQILKNGCTPITEVYKSFMTWSCRRN 608



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 86/429 (20%), Positives = 166/429 (38%), Gaps = 40/429 (9%)

Query: 24  LLKVHVALDVVEQMVQG-------ELVPSTETINSILHACEESYEFNLVRRIYPMICHHN 76
           L++ +  +D++E+ V+        +  P   T N++LH         L   IY  +   N
Sbjct: 132 LIQAYAKMDMIEKAVESFEMMKDFDCKPDVFTYNTVLHVMVRKEVVLLALGIYNRMLKLN 191

Query: 77  LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGAL 136
             PN  TF  +I    K     +A  + D++ +  ++P    Y  I++G  + +    A 
Sbjct: 192 CLPNIATFSILIDGMCKSGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQKADVAY 251

Query: 137 MVLKEMEQANVKPDSQTFSYLIHN------CSNEEDIIKYYEQLKSAGGQITKYVFMALI 190
            +   M+     PDS T++ L+H             ++KY+E+ +     + K  +  LI
Sbjct: 252 RLFIAMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLKYFEKDRYV---LDKQGYSCLI 308

Query: 191 NAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
           +       FE A+       E  +K    + + ++  L+  G+  DA+ +  E+ E G  
Sbjct: 309 DGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLV 368

Query: 250 LEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHC--VRFKQLSSATDL 307
            +     ALI+     G L+    L  E+   D +   C   IL C   R   +  A  +
Sbjct: 369 PDTHCYNALIKGYCDLGLLDEAKSLHLEISKNDCFSSACTYTILICGMCRSGLVGDAQQI 428

Query: 308 LKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS------- 360
             +++       +       + FC+    +          L F K E+G  PS       
Sbjct: 429 FNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQ-------LLFYKMEIGRNPSLFLRLSQ 481

Query: 361 -------RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRK 413
                     L  ++    ++  + +A+ I  +  ++G   N+++Y  +   F  +GN  
Sbjct: 482 GANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIHGFCKAGNIN 541

Query: 414 SASKLLSKM 422
            A KL  ++
Sbjct: 542 GAFKLFKEL 550



 Score = 45.8 bits (107), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 59/284 (20%), Positives = 115/284 (40%), Gaps = 12/284 (4%)

Query: 11  SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYP 70
           +AS + ++   CD   +  A +++ Q+      P+  T N ++H   ++   N   +++ 
Sbjct: 489 TASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIHGFCKAGNINGAFKLFK 548

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
            +    L P+S T+ ++I+  +     + A+++LD + +    P   +Y + M    R+ 
Sbjct: 549 ELQLKGLSPDSVTYGTLINGLLSANREEDAFTVLDQILKNGCTPITEVYKSFMTWSCRRN 608

Query: 131 DVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQ-LKSAGGQITKYVF 186
            +  A  +  +  ++    DS+    +  N      EE +    E   K    Q+  Y  
Sbjct: 609 KITLAFSLWLKYLRSIPGRDSEVLKSVEENFEKGEVEEAVRGLLEMDFKLNDFQLAPYTI 668

Query: 187 MALINAYTTCGEFEKARQVVLDAE---IPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
             +       G  E+A ++    E   + V   S VK  L+  L   G    A  ++   
Sbjct: 669 WLI--GLCQAGRLEEALKIFFTLEEHNVLVTPPSCVK--LIYRLLKVGNLDLAAEIFLYT 724

Query: 244 KEAGCNLEPRAVIALIEH-LNSEGELNRLIQLLEEVHDPDYWMD 286
            + G  L PR    L++  L SE + NR   LL  +    Y +D
Sbjct: 725 IDKGYMLMPRICNRLLKSLLRSEDKRNRAFDLLSRMKSLGYDLD 768


>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 604

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 133/297 (44%), Gaps = 12/297 (4%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY-PMICHHNLKPNSETFR 85
           V  A+ +  Q+   +  P  +  NS++       ++  V ++Y  M    +  P++ T+ 
Sbjct: 142 VRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYS 201

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           ++IS   K+   DSA  LL+++KE+ + PT  +Y  ++A +F+  D  GAL + +EM   
Sbjct: 202 ALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQ 261

Query: 146 NVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKYVFMALINAYTTCGEFEKA 202
             +PD  T++ LI        I + Y    +++  G +        +IN     G  + A
Sbjct: 262 YCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDA 321

Query: 203 RQVVLDAEI--PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE 260
            ++  + E    + S     + + +   S  R S+    +E +KE+G +        LI+
Sbjct: 322 MKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILID 381

Query: 261 HLNSEGELNRLIQLLEEVHDPDYWMDGC----CRLILHCVRFKQLSSATDLLKQLKD 313
                  + + + LLEE+ +  +    C    C LI    + K+   A +L ++LK+
Sbjct: 382 GFCKTNRMEKAMMLLEEMDEKGF--PPCPAAYCSLIDALGKAKRYDLACELFQELKE 436



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 79/402 (19%), Positives = 173/402 (43%), Gaps = 21/402 (5%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P + +Y  LI+  C L +   A+ ++ +M +  + P+T+    ++    +  + +    +
Sbjct: 195 PDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSL 254

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  + H   +P+  T+  +I    K    D AY    +++     P     N ++    +
Sbjct: 255 FEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGK 314

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLI----HNCSNEEDIIKYYEQLKSAGGQITKY 184
              +  A+ + +EME     P   T++ +I     + S   ++  ++E++K +G   + +
Sbjct: 315 AGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSF 374

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSA---LVSALASHGRTSDAIIVYE 241
            +  LI+ +      EKA  ++L  E+  K      +A   L+ AL    R   A  +++
Sbjct: 375 TYSILIDGFCKTNRMEKA--MMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQ 432

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYWMDGCCRLILHCVR 297
           E+KE   +   R    +I+HL   G L+  I + +E++     PD +      L+    R
Sbjct: 433 ELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNA--LMSGLAR 490

Query: 298 FKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGL 357
              L  A   ++++++     ++     ++ I   +A T  P     +++L  +K    +
Sbjct: 491 TGMLDEALSTMRRMQEHGCIPDIN---SYNIILNGLAKTGGP--HRAMEMLSNMKQST-V 544

Query: 358 PPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSY 399
            P     + +LGA  +A   + A  + KE    G  Y++++Y
Sbjct: 545 RPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITY 586



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/282 (20%), Positives = 117/282 (41%), Gaps = 5/282 (1%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           ++ + P++  Y  LI         H AL + E+M      P   T   ++    ++   +
Sbjct: 225 EIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRID 284

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
                +  +     +P++    +MI+   K    D A  L  +++ +  +P+   YN I+
Sbjct: 285 EAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTII 344

Query: 124 AGYFRKKDVQGAL-MVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGG 179
              F  K     +    + M+++ + P S T+S LI   C     E  +   E++   G 
Sbjct: 345 KALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGF 404

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAII 238
                 + +LI+A      ++ A ++  +  E    S + V + ++  L   GR  DAI 
Sbjct: 405 PPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAIN 464

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           +++E+ + GC  +  A  AL+  L   G L+  +  +  + +
Sbjct: 465 MFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQE 506



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/203 (19%), Positives = 93/203 (45%), Gaps = 3/203 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I+PSS +Y  LI   C   ++  A+ ++E+M +    P      S++ A  ++  ++L  
Sbjct: 369 ISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLAC 428

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +  +    ++  +  MI    K    D A ++ D++ ++   P    YNA+M+G 
Sbjct: 429 ELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGL 488

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK--- 183
            R   +  AL  ++ M++    PD  +++ +++  +      +  E L +      +   
Sbjct: 489 ARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDV 548

Query: 184 YVFMALINAYTTCGEFEKARQVV 206
             +  ++ A +  G FE+A +++
Sbjct: 549 VSYNTVLGALSHAGMFEEASKLM 571


>gi|357127305|ref|XP_003565323.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Brachypodium distachyon]
          Length = 746

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 113/231 (48%), Gaps = 10/231 (4%)

Query: 25  LKVHVALDVVEQMVQG-ELVPSTETINSILHACEESYEFN-LVRRIYPMICHHNLKPNSE 82
           L + +AL VV + +   +LVP   T ++++ A  ++   +  V  ++ M+    +   +E
Sbjct: 292 LYLELALRVVHRSIPAWKLVPDKFTYSTVVSALADAGRVDDAVALVHEMVVDGVVA--AE 349

Query: 83  TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM 142
            F  ++   ++  D   A  L   ++     P+A+ YN ++ G       + A+ V++ M
Sbjct: 350 AFNPVLGAMLRTGDVTGAAKLFSFMQLKGCAPSAATYNVLLHGLLLCGRAKAAMGVMRRM 409

Query: 143 EQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEF 199
           E+A V P   T+  ++     C   ED  K  E+++S G    ++VF  +I  +   GE 
Sbjct: 410 ERAEVVPGVMTYGAVVDGLVRCGRLEDACKVIEEMRSKGLVPNEFVFSPVITGFCKLGEV 469

Query: 200 EKARQVVLDAEIP--VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC 248
           ++A + V D  +   +K    + SA++  LA  G+ ++A +++ E+ EA C
Sbjct: 470 DRASR-VWDTMVAAGIKPNVVLYSAMIDGLARCGKMTEAELLFREMIEAKC 519



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 64/318 (20%), Positives = 127/318 (39%), Gaps = 40/318 (12%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
            PS+A+Y  L+       +   A+ V+ +M + E+VP   T  +++             +
Sbjct: 380 APSAATYNVLLHGLLLCGRAKAAMGVMRRMERAEVVPGVMTYGAVVDGLVRCGRLEDACK 439

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +   +    L PN   F  +I+   K+ + D A  + D +    + P   +Y+A++ G  
Sbjct: 440 VIEEMRSKGLVPNEFVFSPVITGFCKLGEVDRASRVWDTMVAAGIKPNVVLYSAMIDGLA 499

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKY 184
           R   +  A ++ +EM +A   P+  T+S ++       +    + ++E +   G      
Sbjct: 500 RCGKMTEAELLFREMIEAKCVPNIMTYSSMVRGYFQIGDSSQALSFWEDMLRIGCTPNAV 559

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
            +  LIN                                   L + GR+ DA++V++ + 
Sbjct: 560 TYSVLING----------------------------------LCNVGRSKDAMMVWKHML 585

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLL-EEVHDPDYWMDGCCRLIL--HCVRFKQL 301
             GC  +  A  ++I+     G ++  ++L  + +   D   D  C  +L    +R K L
Sbjct: 586 GRGCVPDTIAYTSMIKGFCVSGMVDAGLRLFYDMLARGDTHPDVICYNVLLDGLLRAKDL 645

Query: 302 SSATDLLKQLKDKFKDDE 319
             A DLL Q+ D+  D +
Sbjct: 646 PRAMDLLNQMLDQACDPD 663



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/208 (19%), Positives = 89/208 (42%), Gaps = 3/208 (1%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           + E+ P   +Y  ++       ++  A  V+E+M    LVP+    + ++    +  E +
Sbjct: 411 RAEVVPGVMTYGAVVDGLVRCGRLEDACKVIEEMRSKGLVPNEFVFSPVITGFCKLGEVD 470

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              R++  +    +KPN   + +MI    +      A  L  ++ E   +P    Y++++
Sbjct: 471 RASRVWDTMVAAGIKPNVVLYSAMIDGLARCGKMTEAELLFREMIEAKCVPNIMTYSSMV 530

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQ 180
            GYF+  D   AL   ++M +    P++ T+S LI+   N    +D +  ++ +   G  
Sbjct: 531 RGYFQIGDSSQALSFWEDMLRIGCTPNAVTYSVLINGLCNVGRSKDAMMVWKHMLGRGCV 590

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLD 208
                + ++I  +   G  +   ++  D
Sbjct: 591 PDTIAYTSMIKGFCVSGMVDAGLRLFYD 618


>gi|297817834|ref|XP_002876800.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322638|gb|EFH53059.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1010

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 136/314 (43%), Gaps = 8/314 (2%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P    +  L +   DL  V  A+    +M +  + P T + N +LH   +  + + V+R 
Sbjct: 23  PGFGVFDALFSVLIDLGMVEEAIQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRF 82

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +     KP   T+  MI    K  D ++A  L +++K   L+P    YN+++ G+ +
Sbjct: 83  FKDMIGAGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGK 142

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC----SNEEDIIKYYEQLKSAGGQITKY 184
              +   +   +EM+    +PD  T++ LI NC          ++++ ++K  G +    
Sbjct: 143 VGRLDDTVCFFEEMKDMCCEPDVITYNALI-NCFCKFGKLPKGLEFFREMKRNGLKPNVV 201

Query: 185 VFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
            +  L++A+   G  ++A +  +D   + +       ++L+ A    G  SDA  +  E+
Sbjct: 202 SYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEM 261

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD--GCCRLILHCVRFKQL 301
            + G         ALI+ L         + LL+E+ + D  +     C LI    + K +
Sbjct: 262 LQVGVEWNVVTYTALIDGLCGWENPTEGLHLLDEMVELDIKVTVVTFCVLIDGLCKNKLV 321

Query: 302 SSATDLLKQLKDKF 315
           S A D   ++ + F
Sbjct: 322 SKAIDYFGRISNDF 335



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 63/326 (19%), Positives = 134/326 (41%), Gaps = 23/326 (7%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +  + P + S   L+     L K        + M+     P+  T N ++    +  +  
Sbjct: 53  RFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGAKPTVFTYNIMIDCMCKEGDVE 112

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             R ++  +    L P++ T+ SMI    K+   D      +++K+M   P    YNA++
Sbjct: 113 AARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALI 172

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQ 180
             + +   +   L   +EM++  +KP+  ++S L+     E   +  IK+Y  ++  G  
Sbjct: 173 NCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLV 232

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIV 239
             +Y + +LI+AY   G    A ++  +  ++ V+      +AL+  L      ++ + +
Sbjct: 233 PNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALIDGLCGWENPTEGLHL 292

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWM-----------DGC 288
            +E+ E    +       LI+ L     +++ I     + + D+ +           DG 
Sbjct: 293 LDEMVELDIKVTVVTFCVLIDGLCKNKLVSKAIDYFGRISN-DFGLQANAAIYTAMIDGL 351

Query: 289 CRLILHCVRFKQLSSATDLLKQLKDK 314
           C       +  Q+ +AT L +Q+  K
Sbjct: 352 C-------KGNQVEAATTLFEQMAQK 370



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 124/279 (44%), Gaps = 13/279 (4%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVRR 67
           P   +Y  LI   C   K+   L+   +M +  L P+  + ++++ A C+E      ++ 
Sbjct: 163 PDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAFCKEGMMQQAIK- 221

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
            Y  +    L PN  T+ S+I    KI +   A+ L +++ ++ +      Y A++ G  
Sbjct: 222 FYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALIDGLC 281

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGG-QITK 183
             ++    L +L EM + ++K    TF  LI   C N+     I Y+ ++ +  G Q   
Sbjct: 282 GWENPTEGLHLLDEMVELDIKVTVVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANA 341

Query: 184 YVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
            ++ A+I+      + E A     Q+     +P ++     ++L+      G   +A+ +
Sbjct: 342 AIYTAMIDGLCKGNQVEAATTLFEQMAQKGLVPDRT---AYTSLMDGNFKQGNVLEALAL 398

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            +++ E G  L+  A  +L+  L+   +L +    LEE+
Sbjct: 399 RDKMVETGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEM 437



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 37/211 (17%), Positives = 90/211 (42%), Gaps = 12/211 (5%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQ----GELVPSTETINSILHACEES 59
           ++ + P+  +Y  LI   C +  +  A  +  +M+Q      +V  T  I+ +      +
Sbjct: 228 RVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALIDGLCGWENPT 287

Query: 60  YEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL-KEMNLMPTASM 118
              +L+  +  +    ++K    TF  +I    K K    A      +  +  L   A++
Sbjct: 288 EGLHLLDEMVEL----DIKVTVVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAI 343

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLK 175
           Y A++ G  +   V+ A  + ++M Q  + PD   ++ L+     + ++++     +++ 
Sbjct: 344 YTAMIDGLCKGNQVEAATTLFEQMAQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMV 403

Query: 176 SAGGQITKYVFMALINAYTTCGEFEKARQVV 206
             G ++    + +L+   + C + +KAR  +
Sbjct: 404 ETGMKLDLLAYTSLVWGLSHCNQLQKARSFL 434


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 130/290 (44%), Gaps = 17/290 (5%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVV----EQMVQGELVPSTETINSILHACEESYEF 62
           + P+  +   L+   C   +V  A++       + ++G+ V  T  IN+  +       F
Sbjct: 450 VAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNV----NNF 505

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
                ++  +      P++  + ++IS   +      A  +L +LK++ + P    YN +
Sbjct: 506 EKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTL 565

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGG 179
           + G+ R         +LKEME+A +KPD+ T++ LI   S   D+    K   ++  AG 
Sbjct: 566 IGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGV 625

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLD--AEIPVKSRSEVKSALVSALASHGRTSDAI 237
             T   + A+INAY   G   +A ++  D  A   V   + + + L+++L  + +   A+
Sbjct: 626 VPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAV 685

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQ----LLEEVHDPDY 283
            + E++K  G         A+ + L  E +L ++ +    ++E   +PDY
Sbjct: 686 SLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDY 735



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/222 (19%), Positives = 104/222 (46%), Gaps = 4/222 (1%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           KL I P +  Y  LI   C   K H   +++++M +  L P T T N+++    ++ +  
Sbjct: 552 KLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLK 611

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTAS-MYNAI 122
             +++   +    + P   T+ ++I+      + + A  +  D+K  + +P  + +YN +
Sbjct: 612 FAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNIL 671

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQIT 182
           +    +   V+ A+ ++++M+   V P++ T++ +     +E+D+ K +E +        
Sbjct: 672 INSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHAC 731

Query: 183 K--YVFMALINAY-TTCGEFEKARQVVLDAEIPVKSRSEVKS 221
              Y+ M ++  + +  GE E+ ++ V   E+   +  +  S
Sbjct: 732 NPDYITMEILTEWLSAVGEIERLKKFVAGCEVSSSTAQKASS 773



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/428 (19%), Positives = 160/428 (37%), Gaps = 56/428 (13%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           SS    +LIT  C   K +   D+  +M++   V  +   NS+L        FN +  + 
Sbjct: 269 SSFWMGRLITRLCRNRKTNRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELM 328

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLK--------EMNLMPTASMYNA 121
             +   +++PN  TF  +I+   K +  D A  +L+ +          +++ P   +YN 
Sbjct: 329 EKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNT 388

Query: 122 IMAGYFRKKDVQGALMVLKEME-QANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSA 177
           ++ G  +    Q  L +++ M  Q    PD+ T++ LI       +I K    ++++   
Sbjct: 389 LIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKE 448

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDA 236
           G          L+      G    A    ++A+   +K  +   +AL++A  +      A
Sbjct: 449 GVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKA 508

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILH 294
           + ++ E+ ++GC+ +      LI   +  G +     +L E+       D  C   LI  
Sbjct: 509 MELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGG 568

Query: 295 CVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDE 354
             R  +     ++LK++                                         +E
Sbjct: 569 FCRTNKFHRVFEMLKEM-----------------------------------------EE 587

Query: 355 LGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKS 414
            GL P     + L+       DLK A  + ++   AG+   V +Y  +  A+  +GN   
Sbjct: 588 AGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNE 647

Query: 415 ASKLLSKM 422
           A ++   M
Sbjct: 648 AMEIFKDM 655


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 121/254 (47%), Gaps = 6/254 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P   +Y  LI   C L  V  A D+V +M +  + PS ET N+++ A   + +     
Sbjct: 400 IRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCF 459

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +    +K +  +F S++    K      A ++LDD+   ++ P A +YN+I+  Y
Sbjct: 460 TVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAY 519

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITK 183
               D + AL+++++M+ + V     T++ L+        I +  E    L++ G +   
Sbjct: 520 IESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDV 579

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             +  +I+A    G+ +KA +++ +  +  ++        LVSALAS GR  D   +Y++
Sbjct: 580 VSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQ 639

Query: 243 IKEAGCNLEPRAVI 256
           +     N+EP + I
Sbjct: 640 MLHK--NVEPSSSI 651



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 93/187 (49%), Gaps = 6/187 (3%)

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           ++++ M+ H  L P +  + ++I+   +++D   A+ + + +K  ++ P    YNA++ G
Sbjct: 354 KQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALING 413

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQIT 182
             + + V  A  ++ EME++ V P  +TF+ LI         E        ++  G +  
Sbjct: 414 LCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSD 473

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEI--PVKSRSEVKSALVSALASHGRTSDAIIVY 240
              F +++ A+   G+  +A   +LD  I   V   ++V ++++ A    G T  A+++ 
Sbjct: 474 VISFGSVVKAFCKNGKIPEA-VAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLV 532

Query: 241 EEIKEAG 247
           E++K +G
Sbjct: 533 EKMKNSG 539



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 95/463 (20%), Positives = 188/463 (40%), Gaps = 20/463 (4%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P + SY  +I       K   AL V ++MV   + P+  T N+++    +  +     R+
Sbjct: 192 PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRL 251

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              + H   KPN  T+  ++S   +    D   +L+D++   +++P    Y+ +  G  R
Sbjct: 252 RDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTR 311

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYV 185
             + Q  L +  E  +  V   + T S L++    +  + K    +E L   G   T  +
Sbjct: 312 TGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVI 371

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +  LIN Y    +   A  +    +   ++      +AL++ L      + A  +  E++
Sbjct: 372 YNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEME 431

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD--GCCRLILHCVRFKQLS 302
           ++G +        LI+   + G+L +   +L ++       D      ++    +  ++ 
Sbjct: 432 KSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIP 491

Query: 303 SATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRK 362
            A  +L  +   +KD     + + S I   I +    D +  L L++ +K+  G+  S  
Sbjct: 492 EAVAILDDM--IYKDVAPNAQVYNSIIDAYIESG---DTEQALLLVEKMKNS-GVSASIV 545

Query: 363 CLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
             + LL     +  +  A  +     N GL  +V+SY  +  A    G+   A +LL +M
Sbjct: 546 TYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEM 605

Query: 423 PKDDPHVRFVIQACKQTYTIPSLQKERGFEKDRDTL---LLHK 462
            K    +R  ++ C   +T+ S     G   D + L   +LHK
Sbjct: 606 NK--YGIRPTLRTC---HTLVSALASAGRVHDMECLYQQMLHK 643



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 80/422 (18%), Positives = 175/422 (41%), Gaps = 20/422 (4%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETI--NSILHACEESYEFNLVR 66
           P + ++ K++        + VAL ++ +M + E  P  +    N ++     S + +   
Sbjct: 155 PDTFAWNKVVQACVAAGDLDVALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDAL 214

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++  +    + PN  T+ +MI  +VK  D ++ + L D +      P    YN +++G 
Sbjct: 215 KVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGL 274

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLKSAGGQITK 183
            R   +     ++ EM   ++ PD  T+S L    +     + ++  + +    G  +  
Sbjct: 275 CRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGA 334

Query: 184 YVFMALINAYTTCGEFEKARQV----VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
           Y    L+N     G+  KA+QV    V    +P    + + + L++          A  +
Sbjct: 335 YTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPT---TVIYNTLINGYCQVRDLRGAFCI 391

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDP--DYWMDGCCRLILHCVR 297
           +E++K      +     ALI  L     + +   L+ E+     D  ++    LI     
Sbjct: 392 FEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGT 451

Query: 298 FKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGL 357
             QL     +L  ++ K    ++       + FC+     P  V I  D++   KD   +
Sbjct: 452 AGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKI-PEAVAILDDMI--YKD---V 505

Query: 358 PPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASK 417
            P+ +  + ++ A + + D ++A L+ ++ +N+G+  ++++Y  + K    S     A +
Sbjct: 506 APNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEE 565

Query: 418 LL 419
           L+
Sbjct: 566 LI 567



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/187 (20%), Positives = 85/187 (45%), Gaps = 3/187 (1%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  ++   C   K+  A+ +++ M+  ++ P+ +  NSI+ A  ES +      +   +
Sbjct: 476 SFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKM 535

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
            +  +  +  T+  ++    +    D A  L+  L+   L P    YN I++    K D 
Sbjct: 536 KNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDT 595

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMAL 189
             AL +L+EM +  ++P  +T   L+   ++     D+   Y+Q+     + +  ++  +
Sbjct: 596 DKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIM 655

Query: 190 INAYTTC 196
           ++AY  C
Sbjct: 656 VDAYVRC 662



 Score = 45.8 bits (107), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 33/176 (18%), Positives = 74/176 (42%), Gaps = 3/176 (1%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++ P++  Y  +I    +      AL +VE+M    +  S  T N +L     S + +  
Sbjct: 504 DVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEA 563

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +   + +  L+P+  ++ ++IS      D D A  LL ++ +  + PT    + +++ 
Sbjct: 564 EELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSA 623

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAG 178
                 V     + ++M   NV+P S  +  ++     C N+  +    +++   G
Sbjct: 624 LASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKG 679



 Score = 38.9 bits (89), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 21/106 (19%), Positives = 53/106 (50%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   SY  +I+  C+      AL+++++M +  + P+  T ++++ A   +   + + 
Sbjct: 575 LRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDME 634

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNL 112
            +Y  + H N++P+S  +  M+   V+ ++     SL  ++ E  +
Sbjct: 635 CLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGI 680


>gi|326527617|dbj|BAK08083.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 642

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 130/280 (46%), Gaps = 27/280 (9%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           +SAS+  +I       +   AL + ++M+     P+  TI S+   C +S + +  +R+ 
Sbjct: 215 TSASWNSMIACYAHGGEFREALTLFDRMLSEGARPNAITITSVFSICAKSGDLDTGKRVR 274

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
            +I   +L+ N     +++ + VK +  D A    D + + +++  ++M    +AGY + 
Sbjct: 275 DLIGEDDLQ-NVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVAWSTM----IAGYAQN 329

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNC----SNE--EDIIKYYEQLKSAGGQITK 183
                +L + + M+  + +P+  T   +I  C    S+E  E I  Y E  +     +T 
Sbjct: 330 GRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSDELVEQIGNYAENQRL---PLTS 386

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-----SALVSALASHGRTSDAII 238
           Y+  ALI+ YT CG   +AR V         SR E K     ++++  LA +G   DAI 
Sbjct: 387 YLGSALIDMYTRCGHVGRARSVF--------SRMEQKGVITWNSMIRGLAMNGFAEDAIS 438

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           +YE++ E G        +AL+      G +++ +   EE+
Sbjct: 439 LYEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFEEM 478


>gi|255580733|ref|XP_002531188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529229|gb|EEF31203.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 619

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 114/256 (44%), Gaps = 13/256 (5%)

Query: 45  STETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLL 104
           S  + N+++H  ++S ++ LV +IY  + H  + PN  T R+MI+   K         +L
Sbjct: 198 SLLSFNTLIHVVQKSDQYPLVWKIYEHMIHKRIYPNEATIRTMINALCKEGKLQMFVDIL 257

Query: 105 DDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NC 161
           D +      P   +   ++    ++  V   + +LK M Q N+  D+  +S ++      
Sbjct: 258 DRIHGKRCRPLVIINACMVFRILQEGRVDVGIGILKGMLQKNMILDTVAYSLIVFAKVRL 317

Query: 162 SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVK 220
            N +  ++ YE +   G     +V   LI AY   G+ EKA Q+  +   + ++   E  
Sbjct: 318 GNLDSALEVYEAMLKRGFNANSFVHTVLIGAYCNGGKIEKANQLFGEMGTMGLEPYDETF 377

Query: 221 SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNR----LIQLLE 276
           + L+   A  GR  + +  +E++ E G      A   +I  L   GE+N+    L +LL+
Sbjct: 378 NFLIEGCAKAGRVEECLSYFEKMIERGLVPSLLAFNKMIAKLCETGEVNQANTFLTRLLD 437

Query: 277 EVHDPD-----YWMDG 287
           +   PD     Y M G
Sbjct: 438 KGFSPDETTYSYLMTG 453



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 83/205 (40%), Gaps = 3/205 (1%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K     +S  +  LI   C+  K+  A  +  +M    L P  ET N ++  C ++    
Sbjct: 332 KRGFNANSFVHTVLIGAYCNGGKIEKANQLFGEMGTMGLEPYDETFNFLIEGCAKAGRVE 391

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
                +  +    L P+   F  MI+   +  + + A + L  L +    P  + Y+ +M
Sbjct: 392 ECLSYFEKMIERGLVPSLLAFNKMIAKLCETGEVNQANTFLTRLLDKGFSPDETTYSYLM 451

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQ 180
            GY R   +Q  L +  EME   + P    F+ LI +   C   E   KY   +K     
Sbjct: 452 TGYERDNQIQEVLKLYYEMEYRPLSPGLLVFTPLIRSLCHCGKLEQAEKYLRIMKGRSLN 511

Query: 181 ITKYVFMALINAYTTCGEFEKARQV 205
            ++ V+ ALI  +    +  +A Q+
Sbjct: 512 PSQQVYEALIAGHLEKSDTARALQL 536



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 61/143 (42%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + PS  ++ K+I   C+  +V+ A   + +++     P   T + ++   E   +   V 
Sbjct: 405 LVPSLLAFNKMIAKLCETGEVNQANTFLTRLLDKGFSPDETTYSYLMTGYERDNQIQEVL 464

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           ++Y  + +  L P    F  +I         + A   L  +K  +L P+  +Y A++AG+
Sbjct: 465 KLYYEMEYRPLSPGLLVFTPLIRSLCHCGKLEQAEKYLRIMKGRSLNPSQQVYEALIAGH 524

Query: 127 FRKKDVQGALMVLKEMEQANVKP 149
             K D   AL +  EM      P
Sbjct: 525 LEKSDTARALQLYNEMISKGFTP 547


>gi|326507322|dbj|BAJ95738.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 593

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 129/280 (46%), Gaps = 27/280 (9%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           +SAS+  +I       +   AL + ++M+     P+  TI S+   C +S + +  +R+ 
Sbjct: 166 TSASWNSMIACYAHGGEFREALALFDRMLSEGARPNAITITSVFSICAKSGDLDTGKRVR 225

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
            +I   +L+ N     +++ + VK +  D A    D + + +++  ++M    +AGY + 
Sbjct: 226 DLIGEDDLQ-NVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVAWSTM----IAGYAQN 280

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNC----SNE--EDIIKYYEQLKSAGGQITK 183
                +L + + M+  + +P+  T   +I  C    S+E  E I  Y E  +     +T 
Sbjct: 281 GRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSDELVEQIGNYAENQRL---PLTS 337

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS-----ALVSALASHGRTSDAII 238
           Y+  ALI+ YT CG   +AR V         SR E K      +++  LA +G   DAI 
Sbjct: 338 YLGSALIDMYTRCGHVGRARSVF--------SRMEQKGVITWNSMIRGLAMNGFAEDAIS 389

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           +YE++ E G        +AL+      G +++ +   EE+
Sbjct: 390 LYEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFEEM 429


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 103/461 (22%), Positives = 192/461 (41%), Gaps = 30/461 (6%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALD----VVEQMVQGELVPSTETINSILHACEE 58
           A L + P  ++   +      LL  H  LD     + ++ Q  + P+T T N IL     
Sbjct: 121 AALALGPHRSALPSVFDTLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLAR 180

Query: 59  SYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM 118
           + +  LVRR++     H   PN  TF  +I    K  +   A +L   +K M   P    
Sbjct: 181 NRQGGLVRRLF----EHLPAPNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVT 236

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE----EDIIKYYEQL 174
           YN+++ GY +  +++   +++ EM ++    D  T++ LI NC ++    E    Y+ ++
Sbjct: 237 YNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTYNALI-NCFSKFGWIEKAYSYFGEM 295

Query: 175 KSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRT 233
           K  G           ++A+   G   +A ++     +     +E   ++LV      GR 
Sbjct: 296 KRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRL 355

Query: 234 SDAIIVYEEIKEAGCNLEPRAV--IALIEHLNSEGEL---NRLIQLLEEVHDPDYWMDGC 288
            DAI++ +E+   G  L P  V    +++ L  EG++   + ++ L+E        +   
Sbjct: 356 DDAIVLLDEMVHQG--LVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYT 413

Query: 289 CRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLL 348
             +  H +  K    A DLL ++K+K  + ++++        C++   D         LL
Sbjct: 414 TLIHGHFMN-KNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAK-----SLL 467

Query: 349 QFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLA 408
             + D+ GL P+      ++ A   A     A  +  +  ++GL  NV++Y  +      
Sbjct: 468 HKM-DDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCK 526

Query: 409 SGNRKSASKLLSKMPK--DDPHVRFVIQACKQTYTIPSLQK 447
           +G+   A     KM +   DP+V+           I SL K
Sbjct: 527 AGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSK 567



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 91/430 (21%), Positives = 183/430 (42%), Gaps = 40/430 (9%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVR---RI 68
           +Y  LI        +  A     +M +  ++ +  T+++ + A C+E     LVR   ++
Sbjct: 271 TYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKE----GLVREAMKL 326

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    + PN  T+ S++    K    D A  LLD++    L+P    Y  ++ G  +
Sbjct: 327 FAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCK 386

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYV 185
           +  V  A  VL  ME+A VK +   ++ LIH      N E  +    ++K+ G ++   +
Sbjct: 387 EGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSL 446

Query: 186 FMALINAYTTCGEFEKARQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
           +  LI       + ++A+ ++  +D +  ++  + + + ++ A    G+ S+A+ +  +I
Sbjct: 447 YGTLIWGLCKVQKLDEAKSLLHKMD-DCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKI 505

Query: 244 KEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVH----DPDY-----WMDGCCRLI 292
            ++G  L+P  V   ALI+ L   G +   I   +++     DP+       +DG C++ 
Sbjct: 506 PDSG--LQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKI- 562

Query: 293 LHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIK 352
                   LS A  L+ ++ DK    +  +     +           D+Q G   L+   
Sbjct: 563 ------GSLSKAVHLMNEMVDKGMSLDKVVYTSLID-----GHMKQGDLQ-GAFALKAKM 610

Query: 353 DELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNR 412
            E GL     C    +    N   ++ A  +  E    G+  +  +Y  + + +   GN 
Sbjct: 611 IETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTAYNCLIRKYQKLGNM 670

Query: 413 KSASKLLSKM 422
           + AS L ++M
Sbjct: 671 EEASSLQNEM 680


>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 110/265 (41%), Gaps = 4/265 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           PS+ +Y  LI   CD+     A+ ++++M     VP+  T   ++       +      +
Sbjct: 298 PSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGV 357

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +  H L P   TF ++I+   K     SA+ LL  +++ N  P    YN +M G  R
Sbjct: 358 FRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCR 417

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYV 185
                 A ++L+ +    + PD  T++ L+     E  +      +  + SAG +   + 
Sbjct: 418 VSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFT 477

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIK 244
           F ALI+     G  E+A  ++        S  EV  +AL+      G+  D   ++E + 
Sbjct: 478 FTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMV 537

Query: 245 EAGCNLEPRAVIALIEHLNSEGELN 269
           E  C          ++ L  + +LN
Sbjct: 538 ENRCLTTAHTFNCFLDALGKDYKLN 562



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/306 (18%), Positives = 122/306 (39%), Gaps = 27/306 (8%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
            K  I+    ++  LI   C + K      + E MV+   + +  T N  L A  + Y+ 
Sbjct: 502 VKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKL 561

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           N    +   +  + L P+  T   +I  + +  +   +  +L+ +K+    P    Y  I
Sbjct: 562 NEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTII 621

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA---GG 179
           + G      V+ A  +L  M    V P+  T++ L+        + + ++ + +    G 
Sbjct: 622 INGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGC 681

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRS-----------EVKSA------ 222
           Q   +++ AL++ +        AR +    ++  +S S           E+K        
Sbjct: 682 QPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSNEIKKCGVPTED 741

Query: 223 ----LVSALASHGRTSDAIIVYEEIKEAGCNLEP-RAVIALIEHLNSEGELNRLIQLLEE 277
               LV  L   GR  +A  + +++ + G  L P +A+ ++IEH     + +  ++ ++ 
Sbjct: 742 LYNFLVVGLCKEGRIIEADQLTQDMVKHG--LFPDKAISSIIEHYCKTCKYDNCLEFMKL 799

Query: 278 VHDPDY 283
           V D  +
Sbjct: 800 VLDNKF 805


>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial [Vitis vinifera]
          Length = 876

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 110/265 (41%), Gaps = 4/265 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           PS+ +Y  LI   CD+     A+ ++++M     VP+  T   ++       +      +
Sbjct: 275 PSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGV 334

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +  H L P   TF ++I+   K     SA+ LL  +++ N  P    YN +M G  R
Sbjct: 335 FRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCR 394

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYV 185
                 A ++L+ +    + PD  T++ L+     E  +      +  + SAG +   + 
Sbjct: 395 VSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFT 454

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIK 244
           F ALI+     G  E+A  ++        S  EV  +AL+      G+  D   ++E + 
Sbjct: 455 FTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMV 514

Query: 245 EAGCNLEPRAVIALIEHLNSEGELN 269
           E  C          ++ L  + +LN
Sbjct: 515 ENRCLTTAHTFNCFLDALGKDYKLN 539



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/252 (20%), Positives = 105/252 (41%), Gaps = 8/252 (3%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
            K  I+    ++  LI   C + K      + E MV+   + +  T N  L A  + Y+ 
Sbjct: 479 VKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKL 538

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           N    +   +  + L P+  T   +I  + +  +   +  +L+ +K+    P    Y  I
Sbjct: 539 NEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTII 598

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA---GG 179
           + G      V+ A  +L  M    V P+  T++ L+        + + ++ + +    G 
Sbjct: 599 INGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGC 658

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASH-GRTSD--- 235
           Q   +++ AL++ +        AR +    ++  +S S  ++   + L+SH  R  D   
Sbjct: 659 QPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEEND-NNCLSSHVFRLMDVDH 717

Query: 236 AIIVYEEIKEAG 247
           A+ + +EIK+ G
Sbjct: 718 ALKIRDEIKKCG 729


>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
          Length = 833

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 110/265 (41%), Gaps = 4/265 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           PS+ +Y  LI   CD+     A+ ++++M     VP+  T   ++       +      +
Sbjct: 232 PSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGV 291

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +  H L P   TF ++I+   K     SA+ LL  +++ N  P    YN +M G  R
Sbjct: 292 FRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCR 351

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYV 185
                 A ++L+ +    + PD  T++ L+     E  +      +  + SAG +   + 
Sbjct: 352 VSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFT 411

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIK 244
           F ALI+     G  E+A  ++        S  EV  +AL+      G+  D   ++E + 
Sbjct: 412 FTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMV 471

Query: 245 EAGCNLEPRAVIALIEHLNSEGELN 269
           E  C          ++ L  + +LN
Sbjct: 472 ENRCLTTAHTFNCFLDALGKDYKLN 496



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/252 (20%), Positives = 105/252 (41%), Gaps = 8/252 (3%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
            K  I+    ++  LI   C + K      + E MV+   + +  T N  L A  + Y+ 
Sbjct: 436 VKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKL 495

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           N    +   +  + L P+  T   +I  + +  +   +  +L+ +K+    P    Y  I
Sbjct: 496 NEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTII 555

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA---GG 179
           + G      V+ A  +L  M    V P+  T++ L+        + + ++ + +    G 
Sbjct: 556 INGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGC 615

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASH-GRTSD--- 235
           Q   +++ AL++ +        AR +    ++  +S S  ++   + L+SH  R  D   
Sbjct: 616 QPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEEND-NNCLSSHVFRLMDVDH 674

Query: 236 AIIVYEEIKEAG 247
           A+ + +EIK+ G
Sbjct: 675 ALKIRDEIKKCG 686


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 93/431 (21%), Positives = 169/431 (39%), Gaps = 49/431 (11%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P    +  L +   DL  +  A     +M +  + P T + N +LH   +  + + V+R 
Sbjct: 61  PGFGVFDALFSVLIDLGMLEEATQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRF 120

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +     KP   T+  MI    K  D ++A  L +++K   L+P    YN+++ GY +
Sbjct: 121 FKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGK 180

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC----SNEEDIIKYYEQLKSAGGQITKY 184
              +   +   +EM+  + +PD  T++ LI NC          +++Y ++K +G +    
Sbjct: 181 VGRLDDTVYFFEEMKSMSCEPDVITYNSLI-NCFCKSGKLPKGLEFYREMKQSGLKPNVV 239

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEI 243
            +  L++A+      ++A +  +D        +E   ++LV A    G  SDA  +  E+
Sbjct: 240 SYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEM 299

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW--MDGCCRLILHCVRFKQL 301
            E G         ALI+ L     +    +L  ++        +     LI   V+ K +
Sbjct: 300 LEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNM 359

Query: 302 SSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSR 361
             A +LL +LK +                            I  DLL +           
Sbjct: 360 DRALELLNELKGR---------------------------GIQPDLLLYGT--------- 383

Query: 362 KCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSK 421
               F+ G C     ++ A ++  E +  G+  N L Y  +  A+  SGN      LL +
Sbjct: 384 ----FIWGLC-GLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEE 438

Query: 422 MPKDDPHVRFV 432
           M + D  V  V
Sbjct: 439 MQELDHEVTVV 449



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 85/455 (18%), Positives = 176/455 (38%), Gaps = 36/455 (7%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +  + P + S   L+     L K        + M+     P+  T N ++    +  +  
Sbjct: 91  RFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIE 150

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             R ++  +    L P++ T+ SMI    K+   D      +++K M+  P    YN+++
Sbjct: 151 AARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLI 210

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQ 180
             + +   +   L   +EM+Q+ +KP+  ++S L+     E   +  IK+Y  ++  G  
Sbjct: 211 NCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHV 270

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIV 239
             ++ + +L++A    G    A ++  +  E+ V+      +AL+  L    R  +A  +
Sbjct: 271 PNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKL 330

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYWMDG-------- 287
           + ++  AG      +  ALI        ++R ++LL E+      PD  + G        
Sbjct: 331 FGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCG 390

Query: 288 -----CCRLILHCVRFKQLSSATDLLKQLKDK-FKDDEMAMEYHFSE------------I 329
                  +++++ ++   + + T +   L D  FK        H  E             
Sbjct: 391 LEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVT 450

Query: 330 FCQI--ATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEY 387
           FC +         V   +D    + ++ GL P+      ++        +K A  ++++ 
Sbjct: 451 FCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQM 510

Query: 388 ENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
              GL  +  +Y  +    L  GN   A  L  KM
Sbjct: 511 AQEGLVPDRTAYTSLMDGNLKQGNMLEALALRDKM 545



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/310 (16%), Positives = 136/310 (43%), Gaps = 7/310 (2%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  L+  +C +  +  A  +  +M++  +  +  T  +++    ++       ++
Sbjct: 271 PNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKL 330

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    + PN  ++ ++I   VK K+ D A  LL++LK   + P   +Y   + G   
Sbjct: 331 FGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCG 390

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITKYV 185
            + ++ A +V+ EM++  +K ++  ++ L+       N  + +   E+++    ++T   
Sbjct: 391 LEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVT 450

Query: 186 FMALINAYTTCGEFEKARQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
           F  LI+         KA      +  +  ++  + V +A++  L    +   A  ++E++
Sbjct: 451 FCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQM 510

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD--GCCRLILHCVRFKQL 301
            + G   +  A  +L++    +G +   + L +++ +    +D      L+    +  QL
Sbjct: 511 AQEGLVPDRTAYTSLMDGNLKQGNMLEALALRDKMAEIGMKLDLLAYTSLVWGFSQCNQL 570

Query: 302 SSATDLLKQL 311
             A   L+++
Sbjct: 571 QKARSFLEEM 580


>gi|242062226|ref|XP_002452402.1| hypothetical protein SORBIDRAFT_04g025130 [Sorghum bicolor]
 gi|241932233|gb|EES05378.1| hypothetical protein SORBIDRAFT_04g025130 [Sorghum bicolor]
          Length = 506

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 112/243 (46%), Gaps = 9/243 (3%)

Query: 45  STETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLL 104
           +TET+N +L A  +  +  L R ++ M+  H + P++ TF   +     ++  D A   +
Sbjct: 190 NTETMNVLLDALCKERKVELAREVFVMLSPH-IAPDAYTFNIFVHGWCSVRRIDEAMWTI 248

Query: 105 DDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---C 161
           +++K     P    Y A++  Y ++++ +    +L  M      P+  T++ ++ +   C
Sbjct: 249 EEMKNRGFPPIVITYTAVLEAYCKQRNFRRVYEILDSMSSQGCHPNVITYTMIMTSLTKC 308

Query: 162 SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIP---VKSRSE 218
              E+ +   +++KS+G +     + ALIN     G   +A Q V   E+P   V     
Sbjct: 309 ERFEEALSVSDRMKSSGCKPDTLFYNALINLLGRAGHLFEANQ-VFRVEMPRNVVPRNVA 367

Query: 219 VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL-NSEGELNRLIQLLEE 277
             + ++S L  +GR  DA+ V +E++   C  + +    L+  L    G+   +  LL E
Sbjct: 368 TYNTMISILCQYGRDDDALDVLKEMEAQSCKPDLQTYQPLLRLLFGRRGQTGAIHHLLSE 427

Query: 278 VHD 280
           + D
Sbjct: 428 LRD 430



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 70/192 (36%), Gaps = 42/192 (21%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P + ++   +   C + ++  A+  +E+M      P   T  ++L A  +   F  V 
Sbjct: 221 IAPDAYTFNIFVHGWCSVRRIDEAMWTIEEMKNRGFPPIVITYTAVLEAYCKQRNFRRVY 280

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA----- 121
            I   +      PN  T+  +++   K + F+ A S+ D +K     P    YNA     
Sbjct: 281 EILDSMSSQGCHPNVITYTMIMTSLTKCERFEEALSVSDRMKSSGCKPDTLFYNALINLL 340

Query: 122 ----------------------------------IMAGYFRKKDVQGALMVLKEMEQANV 147
                                             I+  Y R  D   AL VLKEME  + 
Sbjct: 341 GRAGHLFEANQVFRVEMPRNVVPRNVATYNTMISILCQYGRDDD---ALDVLKEMEAQSC 397

Query: 148 KPDSQTFSYLIH 159
           KPD QT+  L+ 
Sbjct: 398 KPDLQTYQPLLR 409


>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 653

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/279 (20%), Positives = 127/279 (45%), Gaps = 4/279 (1%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +I P + +Y  +I   C   K+  A++    M    + P   T  +++ AC    +F+  
Sbjct: 250 KIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFDTC 309

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +Y  +    L+    ++  +I    K +    AY++ + + +       ++Y A++  
Sbjct: 310 LSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDS 369

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQIT 182
           Y +   ++ A+ + + M+    +PD+ T+S L++  C +   +D ++ ++  ++ G  I 
Sbjct: 370 YSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAIN 429

Query: 183 KYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
              + +LI+     G  E A  +  + +E      S   +A++ ALA HG+   A+ ++ 
Sbjct: 430 AMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFG 489

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
            ++E GC+        LI+ L  E +    I+  +++ D
Sbjct: 490 RMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMID 528



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 125/273 (45%), Gaps = 23/273 (8%)

Query: 16  KLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHH 75
           +L+T+S DL+K+ +   V  ++    L+ +    NS++ +         +  ++  +  +
Sbjct: 158 ELLTFSADLVKIRL---VFFELKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKEN 214

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
            + P+  T+  +++  V     +SA  + + +    ++P    YN ++ GY +   +Q A
Sbjct: 215 GIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKA 274

Query: 136 LMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINA 192
           +   ++ME  NVKPD  T+  LI  C +E D    +  Y +++  G +I  + +  +I  
Sbjct: 275 MEKFRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGG 334

Query: 193 YT---TCGE----FEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
                 C E    FE   Q    A +       + +AL+ + + +G   +A+ ++E +K 
Sbjct: 335 LCKQRKCMEAYAVFETMNQKGCRANVA------IYTALIDSYSKNGSMEEAMRLFERMKN 388

Query: 246 AGCNLEPRAVI--ALIEHLNSEGELNRLIQLLE 276
            G   EP AV    L+  L   G L+  ++L +
Sbjct: 389 EG--FEPDAVTYSVLVNGLCKSGRLDDGMELFD 419



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 53/250 (21%), Positives = 104/250 (41%), Gaps = 5/250 (2%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+ + E+M      P   T + +++   +S   +    ++    +  +  N+  + S+I 
Sbjct: 379 AMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLID 438

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              K    + A +L +++ E      +  YNAI+    +   +  AL +   ME+     
Sbjct: 439 GLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQ 498

Query: 150 DSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
              TF+ LI     E   E+ IK+++++   G   T   F AL      CG+  +A + +
Sbjct: 499 TVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGLCLCGKVARACK-I 557

Query: 207 LDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
           LD   P+    E     +++ L    R  +A  + + I + G  +  R    LI  L   
Sbjct: 558 LDDLAPMGIIPETAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVLINALRKA 617

Query: 266 GELNRLIQLL 275
           G  + +I+L+
Sbjct: 618 GNSDLVIKLM 627


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 131/286 (45%), Gaps = 9/286 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I+P   +Y  LI+  C + K+  A D+  +M+   + P+  T N ++    +       +
Sbjct: 243 ISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAK 302

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +  M+    +KP+  T+ S++     +K+ + A  + + + +  + P    Y+ ++ G+
Sbjct: 303 NVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGF 362

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITK 183
            + K V  A+ + KEM   N+ PD  T++ LI        I   +K  +++   G    K
Sbjct: 363 CKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDK 422

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             + ++++A     + +KA  ++    +  ++      + LV  L  +GR  DA IV+E+
Sbjct: 423 ITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFED 482

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC 288
           +   G  L+     A+I+   S G  +  + LL ++ +     +GC
Sbjct: 483 LLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEE-----NGC 523



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 114/256 (44%), Gaps = 10/256 (3%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
            I P+  ++  L+   C   ++  A +V+  M++  + P   T NS++       E N  
Sbjct: 277 NINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKA 336

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           + I+  I    + PN  ++  MI    KIK  D A +L  ++   N++P    YN+++ G
Sbjct: 337 KHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDG 396

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE--DIIKYYEQLKSAGGQIT 182
             +   +  AL ++ EM    V  D  T++ ++   C N +    I    ++K  G Q  
Sbjct: 397 LCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPD 456

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKS---RSEVKSALVSALASHGRTSDAIIV 239
              +  L++     G  E AR V  D  + VK       + +A++    SHG   +++ +
Sbjct: 457 ICTYTTLVDGLCKNGRLEDARIVFED--LLVKGYILDVNIYTAMIQGFCSHGLFDESLDL 514

Query: 240 YEEIKEAGCNLEPRAV 255
             +++E GC   P AV
Sbjct: 515 LSKMEENGC--IPNAV 528



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/295 (18%), Positives = 131/295 (44%), Gaps = 15/295 (5%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELV-PSTETINSILHACEESYEFNLVRRI 68
           +  SY  LI   C + +   AL ++ + V G+LV P+    N+I+ +  +    N    +
Sbjct: 176 NKVSYGTLINGLCKVGQTSAALQLLRR-VDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDL 234

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           Y  +    + P+  T+ ++IS    +     A  L + +   N+ P    +N ++ G+ +
Sbjct: 235 YSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCK 294

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYV 185
           ++ ++ A  VL  M +  +KPD  T++ L+      +++ K    +  +   G     + 
Sbjct: 295 ERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHS 354

Query: 186 FMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +  +I+ +    + ++A  +  +     +       ++L+  L   G+ S A+ + +E+ 
Sbjct: 355 YSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMH 414

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDY-----WMDGCCR 290
           + G   +     ++++ L    ++++ I LL ++ D    PD       +DG C+
Sbjct: 415 DRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCK 469



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 75/162 (46%), Gaps = 3/162 (1%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           MH    I P   +Y  LI   C L K+  AL +V++M    +     T NSIL A  +++
Sbjct: 378 MHCN-NIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNH 436

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           + +    +   +    ++P+  T+ +++    K    + A  + +DL     +   ++Y 
Sbjct: 437 QVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYT 496

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS 162
           A++ G+        +L +L +ME+    P++ T+  +I  CS
Sbjct: 497 AMIQGFCSHGLFDESLDLLSKMEENGCIPNAVTYEIII--CS 536


>gi|449515696|ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 657

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 132/302 (43%), Gaps = 12/302 (3%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
            I P+  +   +I   C   +     D+  + V    VP+    N+I+    +    NL 
Sbjct: 349 NILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLA 408

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +Y  +C   + P++ T+ S+I    K  + D A  LL+D+K   L      Y  ++ G
Sbjct: 409 SNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDG 468

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQIT 182
           + +++D++ A  +L E+  A + P+   ++ +I    N +N E+ I  Y+++ + G    
Sbjct: 469 FCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCD 528

Query: 183 KYVFMALINAYTTCGEFEKARQV---VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
              + +LI+     G    A  +   +L   I    R+   + L++ L + G+  +A  +
Sbjct: 529 LKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAH--TVLINGLCNKGQFENARKI 586

Query: 240 YEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVR 297
            E++   G N+ P  +I   LI     EG L    +L +E+ D     D     IL   +
Sbjct: 587 LEDMN--GKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILVNGK 644

Query: 298 FK 299
           FK
Sbjct: 645 FK 646



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 79/374 (21%), Positives = 158/374 (42%), Gaps = 57/374 (15%)

Query: 79  PNSETFRSMISLNVKIKDFDSAYSLLDDL----KEMNLMPTASMYNAIMAGYFRKKDVQG 134
           P   TF S+I+  VK  +   A  L DD+    K MNL    S+    M GY  + +++ 
Sbjct: 108 PPEGTFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSL----MKGYCMQGNLRS 163

Query: 135 ALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKYVFMALIN 191
           AL+++ E+ ++ + P+  T+S LI  C    N E   ++Y ++K+ G + + Y   +++ 
Sbjct: 164 ALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILE 223

Query: 192 AYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLE 251
            Y  C  ++ A  +  DA     +     + L+S L   G+ ++A  +++E+   G  + 
Sbjct: 224 GYLKCQSWQNAFTMFNDALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKG--IS 281

Query: 252 PRAVI---ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQ--LSSATD 306
           P  V     ++ H   +  +N   ++ +E+ D  +  +     IL    FK+  + +A  
Sbjct: 282 PNVVSYNNIILGHCRKD-NINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFS 340

Query: 307 LLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGL---------------DLL-QF 350
           +  ++KD                    A   P D  +G+               DL  +F
Sbjct: 341 IFHRMKD--------------------ANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKF 380

Query: 351 IKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASG 410
           +    G  P+    + ++   +   ++  A  +++E    G+  + ++Y  +   F    
Sbjct: 381 VSQ--GFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGN 438

Query: 411 NRKSASKLLSKMPK 424
           N   A KLL+ M +
Sbjct: 439 NIDLALKLLNDMKR 452



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 90/447 (20%), Positives = 166/447 (37%), Gaps = 60/447 (13%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  LI   C    +  A +   +M    +  S  ++NSIL    +   +    
Sbjct: 176 LVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAF 235

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++       L  N  TF +++S   K    + A +L D++    + P    YN I+ G+
Sbjct: 236 TMFNDALESGL-ANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGH 294

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITK 183
            RK ++  A  V KEM      P++ TF+ L+     + DI      + ++K A    T 
Sbjct: 295 CRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTD 354

Query: 184 YVFMALINAYTTCGEFEKAR----QVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
                +I      G   + R    + V    +P        + ++      G  + A  V
Sbjct: 355 TTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPT---CMPYNTIIDGFIKEGNINLASNV 411

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD--GCCRLILHCVR 297
           Y E+ E G         +LI+       ++  ++LL ++      MD      LI    +
Sbjct: 412 YREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCK 471

Query: 298 FKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGL 357
            + + SA +LL +L+                                           GL
Sbjct: 472 RRDMKSAHELLNELRGA-----------------------------------------GL 490

Query: 358 PPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSAS- 416
            P+R   + ++    N  +++ A  ++K+  N G+P ++ +Y  +    L SG    AS 
Sbjct: 491 SPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASD 550

Query: 417 ---KLLSK--MPKDDPHVRFVIQACKQ 438
              ++LSK  +P D  H   +   C +
Sbjct: 551 IHTEMLSKGILPDDRAHTVLINGLCNK 577



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/346 (17%), Positives = 139/346 (40%), Gaps = 78/346 (22%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           ++  L+++ C   K++ A ++ ++++   + P+  + N+I+         N   ++Y  +
Sbjct: 251 TFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEM 310

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM-------------- 118
             +   PN+ TF  ++    K  D ++A+S+   +K+ N++PT +               
Sbjct: 311 LDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRS 370

Query: 119 ---------------------YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYL 157
                                YN I+ G+ ++ ++  A  V +EM +  + P + T++ L
Sbjct: 371 FEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSL 430

Query: 158 IHNCSNEEDI------------------IKYY--------------------EQLKSAGG 179
           I       +I                  IK Y                     +L+ AG 
Sbjct: 431 IDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGL 490

Query: 180 QITKYVFMALINAYTTCGEFEKARQV---VLDAEIPVKSRSEVKSALVSALASHGRTSDA 236
              ++++ ++I  +      E+A  +   +++  IP   ++   ++L+  L   GR   A
Sbjct: 491 SPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKT--YTSLIDGLLKSGRLLYA 548

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPD 282
             ++ E+   G   + RA   LI  L ++G+     ++LE+++  +
Sbjct: 549 SDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKN 594


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 85/162 (52%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           EI PS  S+  LI   C L  V  A  + ++M +  + P+  T N+I+     +   +  
Sbjct: 534 EIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKA 593

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
                 +    + P+  T+ ++I+  VK ++FD A+ L+++++E  L+P    YNAI+ G
Sbjct: 594 NDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGG 653

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI 167
           + R   +Q A MVL +M    + PD  T++ LI+   +++++
Sbjct: 654 FSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNM 695



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 110/245 (44%), Gaps = 4/245 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P++A++  ++  SC    V  A  V  +M+Q  +VP   + +SI+     + E     
Sbjct: 325 LCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRAL 384

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
             +  +    L P++  +  +I+   +  D   A  + +++ E   +     YN ++ G 
Sbjct: 385 AYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGL 444

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITK 183
            R K +  A  + KEM +  V PD  T + LIH    + ++ K    +E +     +   
Sbjct: 445 CRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDV 504

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEE 242
             +  L++ +   GE EKA+++  D        S +  S L++   S G  S+A  +++E
Sbjct: 505 VTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDE 564

Query: 243 IKEAG 247
           +KE G
Sbjct: 565 MKEKG 569



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 86/409 (21%), Positives = 154/409 (37%), Gaps = 81/409 (19%)

Query: 35  EQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKI 94
           E+ V  +LV     +N+       S  F LV      +    LKP   T+ ++I+   K 
Sbjct: 252 EKGVYADLVTYNTLVNAYCRRGLVSEAFGLV----DCMAGKGLKPGLFTYNALINGLCKE 307

Query: 95  KDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTF 154
             ++ A  +LD++  + L P A+ +N ++    RK+DV  A  V  EM Q  V PD  +F
Sbjct: 308 GSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISF 367

Query: 155 SYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA--------- 202
           S ++   S   ++   + Y+E++K  G      ++  LIN Y    +   A         
Sbjct: 368 SSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVE 427

Query: 203 RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
           R  V+D            + L++ L       DA  +++E+ E G   +   +  LI   
Sbjct: 428 RGCVMDVV--------TYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGY 479

Query: 263 NSEGELNRLIQLLEEVH----DPDY-----WMDGCCRLILHCVRFKQLSSATDLLKQLKD 313
             +G + + + L E +      PD       MDG C++        ++  A +L   +  
Sbjct: 480 CKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKV-------GEMEKAKELWYDMIS 532

Query: 314 KFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVN 373
           +             EIF                            PS      L+    +
Sbjct: 533 R-------------EIF----------------------------PSYISFSILINGFCS 551

Query: 374 ARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
              +  A  +W E +  G+   +++   + K +L +GN   A+  L+ M
Sbjct: 552 LGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTM 600



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 81/426 (19%), Positives = 173/426 (40%), Gaps = 30/426 (7%)

Query: 12  ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPM 71
            +Y  L+   C    V  A  +V+ M    L P   T N++++   +   +   +R+   
Sbjct: 260 VTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDE 319

Query: 72  ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131
           +    L PN+ TF  M+  + + +D   A  + +++ +  ++P    +++I+  + R  +
Sbjct: 320 MLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGE 379

Query: 132 VQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMA 188
           +  AL   ++M+   + PD+  ++ LI+     +D+   +K   ++   G  +    +  
Sbjct: 380 LGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNT 439

Query: 189 LINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           L+N        + A ++  +  E  V       + L+      G  + A+ ++E +    
Sbjct: 440 LLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLR- 498

Query: 248 CNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHD----PDY-----WMDGCCRLILHCV 296
            +L+P  V    L++     GE+ +  +L  ++      P Y      ++G C L L   
Sbjct: 499 -SLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGL--- 554

Query: 297 RFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELG 356
               +S A  L  ++K+K     +       + + +       +     D L  +  E G
Sbjct: 555 ----VSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKAN-----DFLNTMISE-G 604

Query: 357 LPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSAS 416
           +PP     + L+ + V   +  RA  +    E  GL  N+++Y  +   F   G  + A 
Sbjct: 605 VPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAE 664

Query: 417 KLLSKM 422
            +L KM
Sbjct: 665 MVLHKM 670



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 110/255 (43%), Gaps = 24/255 (9%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +   LI   C    +  AL + E M    L P   T N+++    +  E    +
Sbjct: 465 VFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAK 524

Query: 67  RI-YPMICHHNLKPNSETFRSMISLNVKIKDFDS------AYSLLDDLKEMNLMPTASMY 119
            + Y MI       + E F S IS ++ I  F S      A+ L D++KE  + PT    
Sbjct: 525 ELWYDMI-------SREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTC 577

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY---EQLKS 176
           N I+ GY R  ++  A   L  M    V PD  T++ LI++   EE+  + +     ++ 
Sbjct: 578 NTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEE 637

Query: 177 AGGQITKYVFMALINAYTTCGEFEKARQVV---LDAEI-PVKSRSEVKSALVSALASHGR 232
            G       + A++  ++  G  ++A  V+   +D  I P KS     ++L++   S   
Sbjct: 638 RGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKS---TYTSLINGYVSKDN 694

Query: 233 TSDAIIVYEEIKEAG 247
             +A  V++E+ + G
Sbjct: 695 MKEAFRVHDEMLQRG 709



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/274 (17%), Positives = 119/274 (43%), Gaps = 10/274 (3%)

Query: 12  ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPM 71
            +Y  L+   C    +  A ++ ++MV+  + P   T+ +++H   +         ++  
Sbjct: 435 VTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFET 494

Query: 72  ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131
           +   +LKP+  T+ +++    K+ + + A  L  D+    + P+   ++ ++ G+     
Sbjct: 495 MTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGL 554

Query: 132 VQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMA 188
           V  A  +  EM++  +KP   T + +I       ++ K   +   + S G       +  
Sbjct: 555 VSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNT 614

Query: 189 LINAYTTCGEFEKARQVVLDAE----IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           LIN++     F++A  ++ + E    +P        +A++   + HGR  +A +V  ++ 
Sbjct: 615 LINSFVKEENFDRAFFLINNMEERGLLP---NLVTYNAILGGFSRHGRMQEAEMVLHKMI 671

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           + G N +     +LI    S+  +    ++ +E+
Sbjct: 672 DKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEM 705


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 1164

 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 92/464 (19%), Positives = 192/464 (41%), Gaps = 32/464 (6%)

Query: 8    TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
            TP   SY  +I   C   ++     ++E+M Q  L P++ T  SI+       +      
Sbjct: 701  TPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEE 760

Query: 68   IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
             +  +    + P++  + +++    K  D  +A     ++   ++ P    Y AI++G+ 
Sbjct: 761  AFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFC 820

Query: 128  RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKY 184
            +  D+  A  +  EM    ++PD  TF+ L++      + +D  + +  +  AG      
Sbjct: 821  QIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVV 880

Query: 185  VFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
             +  LI+     G+ + A +++ +  +I ++      +++V+ L   G   +A+ +  E 
Sbjct: 881  TYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF 940

Query: 244  KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSS 303
            + AG N +      L++     GE+++  ++L E+            L    V F  L +
Sbjct: 941  EAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKG--------LQPTIVTFNVLMN 992

Query: 304  ATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATT-----DPPDVQIGLDLLQFIKDEL--- 355
               L   L    +D E  + +  ++     ATT         ++  L     I  ++   
Sbjct: 993  GFCLHGML----EDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSR 1048

Query: 356  GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSA 415
            G+ P  K  + L+    NAR++K A  +++E +  G   +V +Y  + K F        A
Sbjct: 1049 GVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEA 1108

Query: 416  SKLLSKMPKDDPHVRFVIQACKQTYTIPSLQKERGFEKDRDTLL 459
             ++  +M +D       + A K+ +   S  K +G  K  DT++
Sbjct: 1109 REIFDQMRRDG------LAADKEIFDFFSDTKYKG--KRPDTIV 1144



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 116/269 (43%), Gaps = 22/269 (8%)

Query: 1    MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
            MH++ +ITP   +Y  +I+  C +  +  A  +  +M+   L P   T   +++   ++ 
Sbjct: 800  MHSR-DITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAG 858

Query: 61   EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
                  R++  +      PN  T+ ++I    K  D DSA  LL ++ ++ L P    YN
Sbjct: 859  HIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYN 918

Query: 121  AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSA 177
            +I+ G  +  +++ A+ ++ E E A +  D+ T++ L+       ++ K  E   ++   
Sbjct: 919  SIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGK 978

Query: 178  GGQITKYVFMALINAYTTCGEFEKARQVV-----------------LDAEIPVKSRSEVK 220
            G Q T   F  L+N +   G  E   +++                 L  +  +++  +  
Sbjct: 979  GLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAA 1038

Query: 221  SALVSALASHGRTSDAIIVYEEIKEAGCN 249
            +A+   + S G   D    YE + +  CN
Sbjct: 1039 TAIYKDMCSRGVEPDG-KTYENLVKGHCN 1066


>gi|449461475|ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 775

 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 132/301 (43%), Gaps = 12/301 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P+  +   +I   C   +     D+  + V    VP+    N+I+    +    NL  
Sbjct: 468 ILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLAS 527

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +Y  +C   + P++ T+ S+I    K  + D A  LL+D+K   L      Y  ++ G+
Sbjct: 528 NVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGF 587

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITK 183
            +++D++ A  +L E+  A + P+   ++ +I    N +N E+ I  Y+++ + G     
Sbjct: 588 CKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDL 647

Query: 184 YVFMALINAYTTCGEFEKARQV---VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
             + +LI+     G    A  +   +L   I    R+   + L++ L + G+  +A  + 
Sbjct: 648 KTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAH--TVLINGLCNKGQFENARKIL 705

Query: 241 EEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRF 298
           E++   G N+ P  +I   LI     EG L    +L +E+ D     D     IL   +F
Sbjct: 706 EDMN--GKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILVNGKF 763

Query: 299 K 299
           K
Sbjct: 764 K 764



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 79/374 (21%), Positives = 158/374 (42%), Gaps = 57/374 (15%)

Query: 79  PNSETFRSMISLNVKIKDFDSAYSLLDDL----KEMNLMPTASMYNAIMAGYFRKKDVQG 134
           P   TF S+I+  VK  +   A  L DD+    K MNL    S+    M GY  + +++ 
Sbjct: 226 PPEGTFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSL----MKGYCMQGNLRS 281

Query: 135 ALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKYVFMALIN 191
           AL+++ E+ ++ + P+  T+S LI  C    N E   ++Y ++K+ G + + Y   +++ 
Sbjct: 282 ALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILE 341

Query: 192 AYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLE 251
            Y  C  ++ A  +  DA     +     + L+S L   G+ ++A  +++E+   G  + 
Sbjct: 342 GYLKCQSWQNAFTMFNDALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKG--IS 399

Query: 252 PRAVI---ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQ--LSSATD 306
           P  V     ++ H   +  +N   ++ +E+ D  +  +     IL    FK+  + +A  
Sbjct: 400 PNVVSYNNIILGHCRKD-NINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFS 458

Query: 307 LLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGL---------------DLL-QF 350
           +  ++KD                    A   P D  +G+               DL  +F
Sbjct: 459 IFHRMKD--------------------ANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKF 498

Query: 351 IKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASG 410
           +    G  P+    + ++   +   ++  A  +++E    G+  + ++Y  +   F    
Sbjct: 499 VSQ--GFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGN 556

Query: 411 NRKSASKLLSKMPK 424
           N   A KLL+ M +
Sbjct: 557 NIDLALKLLNDMKR 570



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 90/447 (20%), Positives = 166/447 (37%), Gaps = 60/447 (13%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  LI   C    +  A +   +M    +  S  ++NSIL    +   +    
Sbjct: 294 LVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAF 353

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++       L  N  TF +++S   K    + A +L D++    + P    YN I+ G+
Sbjct: 354 TMFNDALESGL-ANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGH 412

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITK 183
            RK ++  A  V KEM      P++ TF+ L+     + DI      + ++K A    T 
Sbjct: 413 CRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTD 472

Query: 184 YVFMALINAYTTCGEFEKAR----QVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
                +I      G   + R    + V    +P        + ++      G  + A  V
Sbjct: 473 TTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPT---CMPYNTIIDGFIKEGNINLASNV 529

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD--GCCRLILHCVR 297
           Y E+ E G         +LI+       ++  ++LL ++      MD      LI    +
Sbjct: 530 YREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCK 589

Query: 298 FKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGL 357
            + + SA +LL +L+                                           GL
Sbjct: 590 RRDMKSAHELLNELRGA-----------------------------------------GL 608

Query: 358 PPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSAS- 416
            P+R   + ++    N  +++ A  ++K+  N G+P ++ +Y  +    L SG    AS 
Sbjct: 609 SPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASD 668

Query: 417 ---KLLSK--MPKDDPHVRFVIQACKQ 438
              ++LSK  +P D  H   +   C +
Sbjct: 669 IHTEMLSKGILPDDRAHTVLINGLCNK 695



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/346 (17%), Positives = 139/346 (40%), Gaps = 78/346 (22%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           ++  L+++ C   K++ A ++ ++++   + P+  + N+I+         N   ++Y  +
Sbjct: 369 TFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEM 428

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM-------------- 118
             +   PN+ TF  ++    K  D ++A+S+   +K+ N++PT +               
Sbjct: 429 LDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRS 488

Query: 119 ---------------------YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYL 157
                                YN I+ G+ ++ ++  A  V +EM +  + P + T++ L
Sbjct: 489 FEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSL 548

Query: 158 IHNCSNEEDI------------------IKYY--------------------EQLKSAGG 179
           I       +I                  IK Y                     +L+ AG 
Sbjct: 549 IDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGL 608

Query: 180 QITKYVFMALINAYTTCGEFEKARQV---VLDAEIPVKSRSEVKSALVSALASHGRTSDA 236
              ++++ ++I  +      E+A  +   +++  IP   ++   ++L+  L   GR   A
Sbjct: 609 SPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKT--YTSLIDGLLKSGRLLYA 666

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPD 282
             ++ E+   G   + RA   LI  L ++G+     ++LE+++  +
Sbjct: 667 SDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKN 712


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 92/446 (20%), Positives = 176/446 (39%), Gaps = 49/446 (10%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  L+   C    +  A  ++ +M+   + P T+T N+++    +    + V+ +   +
Sbjct: 378 TYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEM 437

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
              NL P + T   +I+   +    + A  + + +  + + P A +Y  ++ G+ ++   
Sbjct: 438 KKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRF 497

Query: 133 QGALMVLKEMEQANVKPDSQTF-SYLIHNCSNE--EDIIKYYEQLKSAGGQITKYVFMAL 189
           Q A+ +LK M++  V+PD   + S +I  C +   E+   Y  ++   G +   Y + AL
Sbjct: 498 QEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGAL 557

Query: 190 INAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC 248
           I+ Y   GE + A +   +     +     V +AL+      G T++A  ++  +     
Sbjct: 558 IHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSV 617

Query: 249 NLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLL 308
           + + R   ALI  L   G+L   ++LL E  +     D           F   S  +   
Sbjct: 618 HPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPD----------VFTYNSIISGFC 667

Query: 309 KQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLL 368
           KQ         +   +   E  CQ                       G+ P+    + L+
Sbjct: 668 KQ-------GGIGKAFQLHEYMCQ----------------------KGISPNIITYNALI 698

Query: 369 GACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMP-KDDP 427
                A +++RA  ++      GL +N ++Y  +   +  SGN   A +L  +M  K  P
Sbjct: 699 NGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVP 758

Query: 428 HVRFVIQACKQTYTIPSLQKERGFEK 453
              FV  A      I   +KE   EK
Sbjct: 759 PDSFVYSA-----LIDGCRKEGNTEK 779



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 125/301 (41%), Gaps = 16/301 (5%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  + P    Y  +I   C   K+  A D + +M++  L P+  T  +++H   +S E  
Sbjct: 509 KKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQ 568

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
           +  R +  +    + PN     ++I    K      A S+   +   ++ P    Y+A++
Sbjct: 569 VADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALI 628

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY---EQLKSAGGQ 180
            G  R   +QGA+ +L E  +  + PD  T++ +I     +  I K +   E +   G  
Sbjct: 629 HGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGIS 688

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKS---RSEVKSALVSALASHGRTSDAI 237
                + ALIN     GE E+AR+ + D  IP K     +   + ++      G  S A 
Sbjct: 689 PNIITYNALINGLCKAGEIERARE-LFDG-IPGKGLAHNAVTYATIIDGYCKSGNLSKAF 746

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQL-LEEVHDP-------DYWMDGCC 289
            +++E+   G   +     ALI+    EG   + + L LE V          +  MDG C
Sbjct: 747 RLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSSLNALMDGFC 806

Query: 290 R 290
           +
Sbjct: 807 K 807



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 121/276 (43%), Gaps = 8/276 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P + +Y  +I             D++ +M +  LVP+  T   I++            
Sbjct: 407 IKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDAS 466

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R++ ++    +KPN+  + ++I  +V+   F  A  +L  + +  + P    YN+++ G 
Sbjct: 467 RVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGL 526

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEEDII--KYYEQLKSAGGQITK 183
            + + ++ A   L EM +  +KP+  T+  LIH  C + E  +  +Y++++   G     
Sbjct: 527 CKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPND 586

Query: 184 YVFMALINAYTTCGEFEKARQV---VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
            V  ALI+ Y   G   +A  +   +L   +    R+   SAL+  L  +G+   A+ + 
Sbjct: 587 VVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRT--YSALIHGLLRNGKLQGAMELL 644

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276
            E  E G   +     ++I     +G + +  QL E
Sbjct: 645 SEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHE 680



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 132/336 (39%), Gaps = 62/336 (18%)

Query: 7    ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
            + P S  Y  LI           AL +  + VQ +   ST ++N+++   C+        
Sbjct: 757  VPPDSFVYSALIDGCRKEGNTEKALSLFLESVQ-KGFASTSSLNALMDGFCKSGKVIEAN 815

Query: 66   RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            + +  M+  H +KP+  T+  +I  + K      A     D+++ NLMP A  Y A+++G
Sbjct: 816  QLLEDMVDKH-VKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSG 874

Query: 126  YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKYYEQLKSAGGQIT 182
            Y           +  EM   +++PD  T+S +I     E D    +K  + +   GG ++
Sbjct: 875  YNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVS 934

Query: 183  KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
            K V   LI+                    P+  +  V              S+ + V E+
Sbjct: 935  KNVCHVLID--------------------PLCRKEHV--------------SEVLKVLEK 960

Query: 243  IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLS 302
            I+E G NL       L+   +  G+                 MDG  R++   VRFK + 
Sbjct: 961  IEEQGLNLSLATCSTLVRCFHKAGK-----------------MDGAARVLKSMVRFKWVP 1003

Query: 303  SATDL--LKQLKDKFKDDEMAMEY---HFSEIFCQI 333
             +T+L  L  ++    D E A ++      E+ CQ+
Sbjct: 1004 DSTELNDLINVEQDSTDSENAGDFLKQMAWEVACQV 1039



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 81/422 (19%), Positives = 165/422 (39%), Gaps = 49/422 (11%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           +PS  +Y  +I   C   +V  A ++ + M +  LV    T + ++    +       + 
Sbjct: 268 SPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKL 327

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +   +    LKP    + ++I   ++  D   A+ + +++    +      YNA++ G  
Sbjct: 328 MLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVC 387

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFM 187
           +  D++ A  +L EM    +KPD+QT++ +I     E++  +  + L     ++ K    
Sbjct: 388 KFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLS----EMKKS--- 440

Query: 188 ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
            L+    TCG                         +++ L  HG   DA  V+E +   G
Sbjct: 441 NLVPTAYTCG------------------------MIINGLCRHGSIEDASRVFEIMVSLG 476

Query: 248 CNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQLSS 303
             ++P AVI   LI+    EG     +++L+ +       D  C   +I+   + +++  
Sbjct: 477 --VKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEE 534

Query: 304 ATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGL---PPS 360
           A D L ++ ++     +         +C+       D        ++ K+ LG    P  
Sbjct: 535 AKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVAD--------RYFKEMLGCGIAPND 586

Query: 361 RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420
             C   + G C        A  I++      +  +V +Y  +    L +G  + A +LLS
Sbjct: 587 VVCTALIDGYCKEG-STTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLS 645

Query: 421 KM 422
           + 
Sbjct: 646 EF 647



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 55/279 (19%), Positives = 111/279 (39%), Gaps = 4/279 (1%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  + P++ +   +I   C    +  A  V E MV   + P+     +++    +   F 
Sbjct: 439 KSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQ 498

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              RI  ++    ++P+   + S+I    K +  + A   L ++ E  L P    Y A++
Sbjct: 499 EAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALI 558

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK 183
            GY +  ++Q A    KEM    + P+    + LI     E    +     +   G+   
Sbjct: 559 HGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVH 618

Query: 184 ---YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
                + ALI+     G+ + A +++ +  E  +       ++++S     G    A  +
Sbjct: 619 PDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQL 678

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           +E + + G +       ALI  L   GE+ R  +L + +
Sbjct: 679 HEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGI 717



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 81/409 (19%), Positives = 156/409 (38%), Gaps = 28/409 (6%)

Query: 50  NSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKE 109
           N +L    ++ +  L  R Y  +   N+  +  T+  +I+ + +  +      LL +++E
Sbjct: 205 NGLLSDLLKANKLELFWRFYNGMLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEE 264

Query: 110 MNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK 169
               P+   YN ++ G  R  +V  A  + K M++  +  D  T+S LI     ++   +
Sbjct: 265 KGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTE 324

Query: 170 ---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVS 225
                E++ S G +     + ALI+ +   G+  +A +V  +     VK      +ALV 
Sbjct: 325 AKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVK 384

Query: 226 ALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWM 285
            +   G    A  +  E+   G   + +    +IE    E   +R+  LL E+   +   
Sbjct: 385 GVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVP 444

Query: 286 DG--CCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQI 343
               C  +I    R   +  A+ +           E+ +            T     VQ 
Sbjct: 445 TAYTCGMIINGLCRHGSIEDASRVF----------EIMVSLGVKPNAVIYTTLIKGHVQE 494

Query: 344 G-----LDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLS 398
           G     + +L+ + D+ G+ P   C + ++     +R ++ A     E    GL  NV +
Sbjct: 495 GRFQEAVRILK-VMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYT 553

Query: 399 YLWMYKAFLASGNRKSASKLLSKM------PKDDPHVRFVIQACKQTYT 441
           Y  +   +  SG  + A +   +M      P D      +   CK+  T
Sbjct: 554 YGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGST 602


>gi|449458656|ref|XP_004147063.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
           chloroplastic-like [Cucumis sativus]
          Length = 1108

 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 81/374 (21%), Positives = 152/374 (40%), Gaps = 20/374 (5%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P+  T N ++  C  S +     ++  ++    +K + + + ++IS   K    D+ + +
Sbjct: 483 PTLSTFNMLMSVCASSQDSERAFQVVRLVQEAGMKADCKLYTTLISTCGKSGKVDAMFEV 542

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163
              +    + P    Y A++ G  R   V  A  V   M   NVKPD   F+ LI  C  
Sbjct: 543 FHRMVNAGVEPNVHTYGALIDGCARAAQVAKAFGVYGIMRSKNVKPDRVVFNALITACGQ 602

Query: 164 EEDIIKYYEQLKSAGGQI-----TKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRS 217
              + + ++ L   G ++           AL+ A    G+ ++AR+V  +  +  +K   
Sbjct: 603 SGAVDRAFDVLAEMGAELHPIEPDHITIGALMKACANAGQVDRAREVYKMIHDYKIKGTP 662

Query: 218 EVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEE 277
           EV +  V+  +       A  +Y+++   G   +   + ALI+     G+L+   ++L E
Sbjct: 663 EVYTIAVNCCSQSCDWDFASNIYQDMTRKGVQPDEIFLSALIDVAGHAGKLDAAFEVLGE 722

Query: 278 VHDPDYWMD--GCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQI-A 334
                  +       L+  C   K    A  L + LK       M +    S +   I A
Sbjct: 723 AKTLGIRVGIVSYSSLMGACSNAKNWQKALALYEDLK------SMKLRLTVSTVNALITA 776

Query: 335 TTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPY 394
            +D   +Q+ +D+L  +K ELGL P+      L  A     DL+ A ++  + +  G   
Sbjct: 777 LSDGEQLQMAMDILTEMK-ELGLSPNNITYSILTAASDRNNDLEIALMLLSQAKEDG--- 832

Query: 395 NVLSYLWMYKAFLA 408
            ++  L MY+  + 
Sbjct: 833 -IVPTLTMYRCIIG 845



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/316 (20%), Positives = 136/316 (43%), Gaps = 12/316 (3%)

Query: 114 PTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE- 172
           PT S +N +M+     +D + A  V++ +++A +K D + ++ LI  C     +   +E 
Sbjct: 483 PTLSTFNMLMSVCASSQDSERAFQVVRLVQEAGMKADCKLYTTLISTCGKSGKVDAMFEV 542

Query: 173 --QLKSAGGQITKYVFMALINAYTTCGEFEKARQV--VLDAEIPVKSRSEVKSALVSALA 228
             ++ +AG +   + + ALI+      +  KA  V  ++ ++  VK    V +AL++A  
Sbjct: 543 FHRMVNAGVEPNVHTYGALIDGCARAAQVAKAFGVYGIMRSK-NVKPDRVVFNALITACG 601

Query: 229 SHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
             G    A  V  E+      +EP  +   AL++   + G+++R  ++ + +HD  Y + 
Sbjct: 602 QSGAVDRAFDVLAEMGAELHPIEPDHITIGALMKACANAGQVDRAREVYKMIHD--YKIK 659

Query: 287 GCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLD 346
           G   +    V     S   D    +        +  +  F      +A      +    +
Sbjct: 660 GTPEVYTIAVNCCSQSCDWDFASNIYQDMTRKGVQPDEIFLSALIDVAG-HAGKLDAAFE 718

Query: 347 LLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAF 406
           +L   K  LG+         L+GAC NA++ ++A  ++++ ++  L   V +   +  A 
Sbjct: 719 VLGEAK-TLGIRVGIVSYSSLMGACSNAKNWQKALALYEDLKSMKLRLTVSTVNALITAL 777

Query: 407 LASGNRKSASKLLSKM 422
                 + A  +L++M
Sbjct: 778 SDGEQLQMAMDILTEM 793



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 55/125 (44%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           L I     SY  L+    +      AL + E +   +L  +  T+N+++ A  +  +  +
Sbjct: 726 LGIRVGIVSYSSLMGACSNAKNWQKALALYEDLKSMKLRLTVSTVNALITALSDGEQLQM 785

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
              I   +    L PN+ T+  + + + +  D + A  LL   KE  ++PT +MY  I+ 
Sbjct: 786 AMDILTEMKELGLSPNNITYSILTAASDRNNDLEIALMLLSQAKEDGIVPTLTMYRCIIG 845

Query: 125 GYFRK 129
              R+
Sbjct: 846 MCLRR 850



 Score = 39.3 bits (90), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 37/195 (18%), Positives = 85/195 (43%), Gaps = 7/195 (3%)

Query: 1   MHAKLE-ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEES 59
           M A+L  I P   +   L+    +  +V  A +V + +   ++  + E     ++ C +S
Sbjct: 616 MGAELHPIEPDHITIGALMKACANAGQVDRAREVYKMIHDYKIKGTPEVYTIAVNCCSQS 675

Query: 60  YEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMY 119
            +++    IY  +    ++P+     ++I +       D+A+ +L + K + +      Y
Sbjct: 676 CDWDFASNIYQDMTRKGVQPDEIFLSALIDVAGHAGKLDAAFEVLGEAKTLGIRVGIVSY 735

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE------DIIKYYEQ 173
           +++M      K+ Q AL + ++++   ++    T + LI   S+ E      DI+   ++
Sbjct: 736 SSLMGACSNAKNWQKALALYEDLKSMKLRLTVSTVNALITALSDGEQLQMAMDILTEMKE 795

Query: 174 LKSAGGQITKYVFMA 188
           L  +   IT  +  A
Sbjct: 796 LGLSPNNITYSILTA 810


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 108/242 (44%), Gaps = 10/242 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL V ++M Q  + P+  T  SIL+AC         RRI+  +    L  ++    ++++
Sbjct: 413 ALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVN 472

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +         A  + D + + +++     YNA++ GY      + AL +   +++  +KP
Sbjct: 473 MYSMCGSVKDARQVFDRMIQRDIVA----YNAMIGGYAAHNLGKEALKLFDRLQEEGLKP 528

Query: 150 DSQTFSYLIHNCSNEEDI--IKYYEQLKSAGGQIT-KYVFMALINAYTTCGEFEKARQVV 206
           D  T+  +++ C+N   +   +    L   GG  +   V  AL++ Y  CG F  A  V 
Sbjct: 529 DKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVF 588

Query: 207 LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
              E   K      +A++   A HGR  DA+ ++E +K  G   +    ++L+   +  G
Sbjct: 589 ---EKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAG 645

Query: 267 EL 268
            L
Sbjct: 646 LL 647



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/253 (20%), Positives = 116/253 (45%), Gaps = 14/253 (5%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A +V  QM +  ++P+  T   +L+AC  S   +  + I+  +       +     ++IS
Sbjct: 312 ASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALIS 371

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  +      A  + D +   +++   +M   +    F  +    AL V +EM+QA V+P
Sbjct: 372 MYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAE----ALTVYQEMQQAGVEP 427

Query: 150 DSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           +  T++ +++ CS+   +    + ++Q+  AG     +V   L+N Y+ CG  + ARQV 
Sbjct: 428 NRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVF 487

Query: 207 LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
              +  ++      +A++   A+H    +A+ +++ ++E G   +    I ++    + G
Sbjct: 488 ---DRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSG 544

Query: 267 ELNRLIQLLEEVH 279
            L    +   E+H
Sbjct: 545 SL----EWAREIH 553



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 161/408 (39%), Gaps = 32/408 (7%)

Query: 30  ALDVVEQMVQ-GELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
           A+DVV+ + Q G  V S++ +  +L  C E  +    R+++  I  H   P+  T  ++I
Sbjct: 7   AVDVVQYLQQQGAQVNSSDYMK-MLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALI 65

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
           ++ ++    + A  +   L  M    T   +NA++ GY +   ++ AL +L++M+Q  + 
Sbjct: 66  NMYIQCGSIEEARQVWKKLSYME--RTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLA 123

Query: 149 PDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           PD  T    + +C +   +    E   Q   AG      V   ++N Y  CG  E+AR+V
Sbjct: 124 PDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREV 183

Query: 206 VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
               E   K      +  +   A  GR+  A  +++++++ G        I+++   +S 
Sbjct: 184 FDKME---KKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSP 240

Query: 266 GELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLK--DKFKDDEMAME 323
             L               W       IL+       +  T L+K       +KD     E
Sbjct: 241 AALK--------------WGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFE 286

Query: 324 YHFSEIFCQIATTDPPDVQIGL-----DLLQFIKDELGLPPSRKCLDFLLGACVNARDLK 378
              +       T      + G      ++   ++ E G+ P++     LL ACVN+  L 
Sbjct: 287 KLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQRE-GVMPNKITYVILLNACVNSAALH 345

Query: 379 RAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDD 426
               I      AG   ++     +   +   G+ K A  +  KM + D
Sbjct: 346 WGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKD 393



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 88/425 (20%), Positives = 178/425 (41%), Gaps = 28/425 (6%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           S  S+   I    D  +   A ++ ++M Q  +VP+  T  S+L+A          + ++
Sbjct: 191 SVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVH 250

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
             I +   + ++    +++ +  K   +     + + L   +L+   +M   +  G + +
Sbjct: 251 SRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWE 310

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVF 186
           +    A  V  +M++  V P+  T+  L++ C N   +    + + ++  AG      V 
Sbjct: 311 E----ASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQ 366

Query: 187 MALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEIK 244
            ALI+ Y+ CG  + AR +V D  +    R +V S  A++  LA  G  ++A+ VY+E++
Sbjct: 367 NALISMYSRCGSIKDAR-LVFDKMV----RKDVISWTAMIGGLAKSGFGAEALTVYQEMQ 421

Query: 245 EAGCNLEPRAV--IALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLS 302
           +AG  +EP  V   +++   +S   L    ++ ++V +     D      L  V    + 
Sbjct: 422 QAG--VEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTL--VNMYSMC 477

Query: 303 SATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGL-DLLQFIKDELGLPPSR 361
            +    +Q+ D+    ++     ++ +    A  +     + L D LQ    E GL P +
Sbjct: 478 GSVKDARQVFDRMIQRDIVA---YNAMIGGYAAHNLGKEALKLFDRLQ----EEGLKPDK 530

Query: 362 KCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSK 421
                +L AC N+  L+ A  I       G   +      +   +   G+   AS +  K
Sbjct: 531 VTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEK 590

Query: 422 MPKDD 426
           M K +
Sbjct: 591 MTKRN 595


>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera]
 gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 115/247 (46%), Gaps = 12/247 (4%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +I+    +     A+ +  +M      P   T+ SIL AC +  +  L   I   +
Sbjct: 194 SWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFV 253

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
             + +  NS    ++I +  K  D  SA  + D + + +++     +NA++ GY +    
Sbjct: 254 VENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVT----WNAMITGYAQNGVS 309

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCS--NEEDIIKYYEQLKSAGG-QITKYVFMAL 189
             A+++   M ++ V PD  T   ++  C+     D  K+ +   S  G Q   YV  AL
Sbjct: 310 DEAIILFSGMRESGVNPDKITLVGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTAL 369

Query: 190 INAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGC 248
           I+ Y  CG  + A +V  D    +  ++EV  +A++SALA HGR  +++ +++ + + G 
Sbjct: 370 IDMYAKCGSLDDALRVFED----MPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGG 425

Query: 249 NLEPRAV 255
            + P  +
Sbjct: 426 AVRPNDI 432



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 110/247 (44%), Gaps = 10/247 (4%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           K ++ ++   QM    + P+  T   +  AC      N  +  +  +    L  +     
Sbjct: 106 KFNLTIEFYYQMKDFGIRPNNFTYPFVFIACANLLVLNHGQCAHSGVLKSGLCADGHVRH 165

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           S+I++  +  +   A  + D++ E +L+     +N++++GY R      A+ +  EM  A
Sbjct: 166 SLITMYSRCGELGCARRVFDEISEKDLVS----WNSMISGYSRMGYAGDAVGLFGEMRDA 221

Query: 146 NVKPDSQTFSYLIHNCSNEEDII--KYYEQLKSAGG-QITKYVFMALINAYTTCGEFEKA 202
             +PD  T   ++  C +  D+    + E         +  +V  ALI  Y  CG+   A
Sbjct: 222 GFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSA 281

Query: 203 RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
           R+V    +  VK      +A+++  A +G + +AII++  ++E+G N +   ++ ++   
Sbjct: 282 RRVF---DRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSAC 338

Query: 263 NSEGELN 269
            S G L+
Sbjct: 339 ASIGALD 345


>gi|116310235|emb|CAH67244.1| OSIGBa0140O07.12 [Oryza sativa Indica Group]
          Length = 581

 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 128/281 (45%), Gaps = 14/281 (4%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-C---EESYEFN 63
           +P   S+  +I   C + +V  AL++VE+M +    P T T N I+   C   E S    
Sbjct: 246 SPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHE 305

Query: 64  LVRRIY-PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           ++RR+    +C     PN  TF S+IS   K    + A ++ +D+    +MP    YN +
Sbjct: 306 VLRRLQRDGVC----MPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVL 361

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGG 179
           + GY +  D+  A+ V ++M +    PD  TFS LI     C   +D ++ +  +     
Sbjct: 362 INGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRI 421

Query: 180 QITKYVFMALINAYTTCGEFEKARQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDAI 237
           Q   Y F  +I++       ++A +++  L+    +  ++ + + ++  L   G+  +A 
Sbjct: 422 QPNVYTFSIIIHSLCKQNRSDEAIRLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEAN 481

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           ++ + ++E GC  +      LI     +  ++  I    E+
Sbjct: 482 LIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEM 522



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/270 (19%), Positives = 121/270 (44%), Gaps = 6/270 (2%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQ-GELVPSTETINSILHACEESYEFNLVR 66
           +P + ++  ++   C   +V    +V+ ++ + G  +P+  T  S++    ++ +     
Sbjct: 281 SPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAM 340

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +Y  +    + PN+ T+  +I+   K+ D  SA  +   +  +   P    +++++ GY
Sbjct: 341 AVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGY 400

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITK 183
            R   +  AL +  +M Q  ++P+  TFS +IH+   +   ++ I+   +L        +
Sbjct: 401 CRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIRLLNELNLRPDIAPQ 460

Query: 184 -YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
            +++  +I+    CG+ ++A  +     E   +      + L+       R S+AI+ + 
Sbjct: 461 AFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFH 520

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRL 271
           E+ EAGC+ +   V   I  L   G  N +
Sbjct: 521 EMVEAGCSPDSITVNCFISCLLKAGMPNEV 550



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 85/462 (18%), Positives = 181/462 (39%), Gaps = 36/462 (7%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQG-ELVPSTETINSILHACEESYE 61
           + L ITPS+ S +++I   C   +   AL + +QM       P    ++ ++ +C  +  
Sbjct: 134 SPLSITPSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANL 193

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLM-PTASMYN 120
            +    +         +  +  +  ++S  +         +L +   +  L  P    +N
Sbjct: 194 LDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRLYSPDVWSFN 253

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSA 177
            ++ G  R   VQ AL +++ M +    PD+ T + ++       ++ + +E   +L+  
Sbjct: 254 VVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRD 313

Query: 178 GGQITKYV-FMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSD 235
           G  +   V F ++I+ Y   G+ E A  V  D     +   +   + L++     G    
Sbjct: 314 GVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGS 373

Query: 236 AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDYWMDGCCRL 291
           A+ VY+++    C  +     +LI+     G+L+  +++  ++      P+ +      +
Sbjct: 374 AVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFS---I 430

Query: 292 ILHCVRFKQLSS-ATDLLKQLKDKFKDDEMAMEYH-FSEIFCQIATTDPPDVQIGLDLLQ 349
           I+H +  +  S  A  LL +L  +      A  Y+   ++ C+    D        +L++
Sbjct: 431 IIHSLCKQNRSDEAIRLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEA------NLIR 484

Query: 350 FIKDELGLPPSRKCLDFL-LGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLA 408
              +E G  P +     L +G C+ +R +  A + + E   AG   + ++        L 
Sbjct: 485 KGMEEKGCRPDKYTYTILIIGYCMKSR-ISEAIMFFHEMVEAGCSPDSITVNCFISCLLK 543

Query: 409 SGNRKSASKLLSKMPKDDPHV-RFVIQACKQTYTIPSLQKER 449
           +G           MP +  HV R            PS  ++R
Sbjct: 544 AG-----------MPNEVDHVMRLASGGASSIQEFPSPVRQR 574


>gi|356556194|ref|XP_003546411.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Glycine max]
          Length = 829

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 94/426 (22%), Positives = 182/426 (42%), Gaps = 24/426 (5%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P + +Y  ++           AL ++++M      P + T N +      +   +    +
Sbjct: 319 PGTVTYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSVTYNELAATYVRAGFLDEGMAV 378

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    + PN+ T+ ++I    K    D A  L   +K++   P    YN+++A   +
Sbjct: 379 IDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTYNSVLAMLGK 438

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKYYEQLKSAGGQITKYV 185
           K   +  + VL EM+     P+  T++ ++  CS E     + K   ++K+ G +  K  
Sbjct: 439 KSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDT 498

Query: 186 FMALINAYTTCG-EFEKAR---QVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
           F  LI+AY  CG E + A+   ++V     P  +     +AL++ALA  G    A  V +
Sbjct: 499 FNTLISAYARCGSEVDSAKMYGEMVKSGFTPCVT---TYNALLNALARRGDWKAAESVIQ 555

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYWMDGCCRLILH-CV 296
           +++  G      +   L+   +  G +  + ++ +E++D    P + +     L  H C 
Sbjct: 556 DMRTKGFKPNENSYSLLLHCYSKAGNVKGIEKVEKEIYDGHVFPSWILLRTLVLTNHKCR 615

Query: 297 RFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELG 356
             + +  A D L+  K  +K D + +    S +F +             ++L FI  E G
Sbjct: 616 HLRGMERAFDQLQ--KYGYKPDLVVINSMLS-MFARNKM-----FSKAREMLHFIH-ECG 666

Query: 357 LPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSAS 416
           L P+    + L+   V   +  +A  + K  +N+G   +V+SY  + K F   G  + A 
Sbjct: 667 LQPNLFTYNCLMDLYVREGECWKAEEVLKGIQNSGPEPDVVSYNTVIKGFCRKGLMQEAI 726

Query: 417 KLLSKM 422
            +LS+M
Sbjct: 727 GVLSEM 732



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/171 (20%), Positives = 80/171 (46%), Gaps = 1/171 (0%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           L   P+  +Y  ++       +    + V+ +M      P+  T N++L  C E  + N 
Sbjct: 420 LGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNY 479

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
           V ++   + +   +P+ +TF ++IS   +      +  +  ++ +    P  + YNA++ 
Sbjct: 480 VNKVLREMKNCGFEPDKDTFNTLISAYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLN 539

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK 175
              R+ D + A  V+++M     KP+  ++S L+H C ++   +K  E+++
Sbjct: 540 ALARRGDWKAAESVIQDMRTKGFKPNENSYSLLLH-CYSKAGNVKGIEKVE 589



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/253 (19%), Positives = 103/253 (40%), Gaps = 37/253 (14%)

Query: 31  LDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL 90
           L+++++M    L     T ++++ AC      +  R+    +  +  KP + T+ SM+ +
Sbjct: 271 LELLDEMRSKGLELDEFTCSTVISACGREGMLDEARKFLAELKFNGYKPGTVTYNSMLQV 330

Query: 91  NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD 150
             K   +  A S+L ++++ N  P +  YN + A Y R   +   + V+  M    V P+
Sbjct: 331 FGKAGIYTEALSILKEMEDNNCPPDSVTYNELAATYVRAGFLDEGMAVIDTMTSKGVMPN 390

Query: 151 SQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVL 207
           + T++ +I        E+D ++ +  +K  G     Y +                     
Sbjct: 391 AITYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTY--------------------- 429

Query: 208 DAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
                        +++++ L    RT D I V  E+K  GC         ++   + EG+
Sbjct: 430 -------------NSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGK 476

Query: 268 LNRLIQLLEEVHD 280
            N + ++L E+ +
Sbjct: 477 HNYVNKVLREMKN 489



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/251 (20%), Positives = 105/251 (41%), Gaps = 4/251 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  SY  L+        V     V +++  G + PS   + +++    +      + R 
Sbjct: 564 PNENSYSLLLHCYSKAGNVKGIEKVEKEIYDGHVFPSWILLRTLVLTNHKCRHLRGMERA 623

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +  +  KP+     SM+S+  + K F  A  +L  + E  L P    YN +M  Y R
Sbjct: 624 FDQLQKYGYKPDLVVINSMLSMFARNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVR 683

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYV 185
           + +   A  VLK ++ +  +PD  +++ +I     +   ++ I    ++ + G Q T   
Sbjct: 684 EGECWKAEEVLKGIQNSGPEPDVVSYNTVIKGFCRKGLMQEAIGVLSEMTTKGIQPTIVT 743

Query: 186 FMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +   ++ Y     F++A +V+    E   +        LV      G+  +A+    +IK
Sbjct: 744 YNTFLSGYAGMELFDEANEVIRFMIEHNCRPSELTYKILVDGYCKAGKYEEAMDFVSKIK 803

Query: 245 EAGCNLEPRAV 255
           E   + + ++V
Sbjct: 804 ELDISFDDQSV 814



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 72/406 (17%), Positives = 153/406 (37%), Gaps = 60/406 (14%)

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           + ++  +++ +I       +   + +++    +   +  A  L   +KE+ L PT   YN
Sbjct: 195 QHSIASKLFDLIPVEKYSLDVRAYTTILHSYARTGKYKRAIDLFGKMKEIGLDPTLVTYN 254

Query: 121 AIMAGYFR-KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKS 176
            ++  Y +  +     L +L EM    ++ D  T S +I  C  E   ++  K+  +LK 
Sbjct: 255 VMLDVYGKMGRSWDRILELLDEMRSKGLELDEFTCSTVISACGREGMLDEARKFLAELKF 314

Query: 177 AGGQITKYVFMALINAYTTCGEFEKA---------------------------RQVVLDA 209
            G +     + +++  +   G + +A                           R   LD 
Sbjct: 315 NGYKPGTVTYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSVTYNELAATYVRAGFLDE 374

Query: 210 EIPV----KSRSEVKSAL-----VSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE 260
            + V     S+  + +A+     + A    GR  DA+ ++  +K+ GC        +++ 
Sbjct: 375 GMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTYNSVLA 434

Query: 261 HLNSEGELNRLIQLLEEVHDPDYWMDGCC-------RLILHCVRFKQLSSATDLLKQLKD 313
            L  +     +I++L E+      ++GC         ++  C    + +    +L+++K+
Sbjct: 435 MLGKKSRTEDVIKVLCEMK-----LNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKN 489

Query: 314 -KFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACV 372
             F+ D+      F+ +    A     +V       + +K   G  P     + LL A  
Sbjct: 490 CGFEPDKDT----FNTLISAYARCG-SEVDSAKMYGEMVKS--GFTPCVTTYNALLNALA 542

Query: 373 NARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKL 418
              D K A  + ++    G   N  SY  +   +  +GN K   K+
Sbjct: 543 RRGDWKAAESVIQDMRTKGFKPNENSYSLLLHCYSKAGNVKGIEKV 588


>gi|357449339|ref|XP_003594946.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359380|gb|ABN05846.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355483994|gb|AES65197.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 849

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 92/443 (20%), Positives = 191/443 (43%), Gaps = 28/443 (6%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P +A+Y  ++           AL+++++M      P   T N ++ A   +   +    +
Sbjct: 341 PGTATYNSMLQVFGKAGVYTEALNILKEMEDNNCEPDAITYNELVAAYVRAGFHDEGAAV 400

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    + PN+ T+ ++I+   K  D D A  +   +KE+  +P    YN ++    +
Sbjct: 401 IDTMASKGVMPNAITYTTVINAYGKAGDADKALEVFGQMKELGCVPNVCTYNNVLVLLGK 460

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS---NEEDIIKYYEQLKSAGGQITKYV 185
           +   +  + +L +M+     PD  T++ ++  C     ++ + +   ++K+ G +  K  
Sbjct: 461 RSRSEDMIKILCDMKLNGCPPDRITWNTMLAVCGEKGKQKFVSQVLREMKNCGFEPDKET 520

Query: 186 FMALINAYTTCG-EFEKAR---QVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
           F  LI+AY  CG E + A+   ++V     P  +     +AL++ALA  G    A  V  
Sbjct: 521 FNTLISAYGRCGSEVDVAKMYGEMVAAGFTPCIT---TYNALLNALARRGNWKAAESVVL 577

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY---WMDGCCR-LILHCVR 297
           ++++ G      +   L+   +  G +  L ++  E++D      WM    R L+L   +
Sbjct: 578 DMRKKGFKPNETSYSLLLHCYSKAGNVRGLEKVEMEIYDGHVFPSWM--LLRTLVLTNYK 635

Query: 298 FKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGL 357
            +QL        QL++     +M +      +F +        ++   ++L  I    GL
Sbjct: 636 CRQLKGMERAFHQLQNNGYKLDMVVINSMLSMFVR-----NQKLEKAHEMLDVIHVS-GL 689

Query: 358 PPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASK 417
            P+    + L+       D  +A  + K+ +N+G+  +V+SY  + K F   G  + A +
Sbjct: 690 QPNLVTYNSLIDLYARVGDCWKAEEMLKDIQNSGISPDVVSYNTVIKGFCKKGLVQEAIR 749

Query: 418 LLSKMPKDDPHVRFVIQACKQTY 440
           +LS+M  +       +Q C  T+
Sbjct: 750 ILSEMTANG------VQPCPITF 766



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 54/110 (49%)

Query: 49  INSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLK 108
           INS+L     + +      +  +I    L+PN  T+ S+I L  ++ D   A  +L D++
Sbjct: 661 INSMLSMFVRNQKLEKAHEMLDVIHVSGLQPNLVTYNSLIDLYARVGDCWKAEEMLKDIQ 720

Query: 109 EMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
              + P    YN ++ G+ +K  VQ A+ +L EM    V+P   TF+  +
Sbjct: 721 NSGISPDVVSYNTVIKGFCKKGLVQEAIRILSEMTANGVQPCPITFNTFM 770



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/201 (19%), Positives = 90/201 (44%), Gaps = 3/201 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  SY  L+        V     V  ++  G + PS   + +++    +  +   + R 
Sbjct: 586 PNETSYSLLLHCYSKAGNVRGLEKVEMEIYDGHVFPSWMLLRTLVLTNYKCRQLKGMERA 645

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  + ++  K +     SM+S+ V+ +  + A+ +LD +    L P    YN+++  Y R
Sbjct: 646 FHQLQNNGYKLDMVVINSMLSMFVRNQKLEKAHEMLDVIHVSGLQPNLVTYNSLIDLYAR 705

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYV 185
             D   A  +LK+++ + + PD  +++ +I     +   ++ I+   ++ + G Q     
Sbjct: 706 VGDCWKAEEMLKDIQNSGISPDVVSYNTVIKGFCKKGLVQEAIRILSEMTANGVQPCPIT 765

Query: 186 FMALINAYTTCGEFEKARQVV 206
           F   ++ Y   G F +A +V+
Sbjct: 766 FNTFMSCYAGNGLFAEADEVI 786



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 71/151 (47%), Gaps = 3/151 (1%)

Query: 31  LDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL 90
           L+++++M    L     T  +++ AC      +  RR +  +  +  KP + T+ SM+ +
Sbjct: 293 LELLDEMRSKGLEFDEFTCTTVISACGREGILDEARRFFDDLKLNGYKPGTATYNSMLQV 352

Query: 91  NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD 150
             K   +  A ++L ++++ N  P A  YN ++A Y R         V+  M    V P+
Sbjct: 353 FGKAGVYTEALNILKEMEDNNCEPDAITYNELVAAYVRAGFHDEGAAVIDTMASKGVMPN 412

Query: 151 SQTFSYLIH---NCSNEEDIIKYYEQLKSAG 178
           + T++ +I+      + +  ++ + Q+K  G
Sbjct: 413 AITYTTVINAYGKAGDADKALEVFGQMKELG 443



 Score = 38.9 bits (89), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 60/352 (17%), Positives = 138/352 (39%), Gaps = 47/352 (13%)

Query: 97  FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALM-VLKEMEQANVKPDSQTFS 155
           +  A  + + +KE  L PT   YN ++  Y +       ++ +L EM    ++ D  T +
Sbjct: 253 YKRAIEIFEKMKETGLDPTLVTYNVMLDVYGKMGRAWSMILELLDEMRSKGLEFDEFTCT 312

Query: 156 YLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAE-I 211
            +I  C  E   ++  ++++ LK  G +     + +++  +   G + +A  ++ + E  
Sbjct: 313 TVISACGREGILDEARRFFDDLKLNGYKPGTATYNSMLQVFGKAGVYTEALNILKEMEDN 372

Query: 212 PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRL 271
             +  +   + LV+A    G   +   V + +   G          +I      G+ ++ 
Sbjct: 373 NCEPDAITYNELVAAYVRAGFHDEGAAVIDTMASKGVMPNAITYTTVINAYGKAGDADKA 432

Query: 272 IQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFC 331
           +++  ++ +            L CV    + +  ++L  L  + + ++M       +I C
Sbjct: 433 LEVFGQMKE------------LGCV--PNVCTYNNVLVLLGKRSRSEDMI------KILC 472

Query: 332 QIATTDPPDVQIGLDLL----------QFIKDEL------GLPPSRKCLDFLL---GACV 372
            +     P  +I  + +          +F+   L      G  P ++  + L+   G C 
Sbjct: 473 DMKLNGCPPDRITWNTMLAVCGEKGKQKFVSQVLREMKNCGFEPDKETFNTLISAYGRCG 532

Query: 373 NARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424
           +  D+ +   ++ E   AG    + +Y  +  A    GN K+A  ++  M K
Sbjct: 533 SEVDVAK---MYGEMVAAGFTPCITTYNALLNALARRGNWKAAESVVLDMRK 581


>gi|297808179|ref|XP_002871973.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297317810|gb|EFH48232.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 831

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 109/243 (44%), Gaps = 5/243 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEE-SYEFNLV 65
           + P+  +   L+   C+  K+  A ++V +M    + P   T N++  A           
Sbjct: 456 LQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSFGVKPDAVTFNTLARAYSRIGSTCTAE 515

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             I P + H+ +KPN  T  ++++   +    + A      +KE+ + P   ++N+++ G
Sbjct: 516 DMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKG 575

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQIT 182
           +    D+ G   V+  ME+  VKPD  TFS L++  S+  D+ +    Y  +   G    
Sbjct: 576 FLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYRDMLEGGIDPD 635

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
            + F  L   Y   GE EKA Q++    +  V+    + + ++S   S G    A+ VY 
Sbjct: 636 IHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYN 695

Query: 242 EIK 244
           +++
Sbjct: 696 KMR 698



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 68/312 (21%), Positives = 129/312 (41%), Gaps = 41/312 (13%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           PS  +Y  L+T        H  L ++ ++ +  L P T   N+I++A  ES   +   +I
Sbjct: 352 PSIITYTTLVTALTRQKHFHSLLSLISKVQKNGLRPDTILFNAIINASSESGNLDQAMKI 411

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDD-LKEMNLMPTASMYNAIMAGYF 127
           +  +     KP + TF ++I    KI   + +  LL+  L++  L P     N ++  + 
Sbjct: 412 FEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLEMMLRDEMLQPNDRTCNILVQAWC 471

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIH-------NCSNEEDII------------ 168
            ++ ++ A  ++ +M+   VKPD+ TF+ L          C+ E+ II            
Sbjct: 472 NQRKIEEAWNIVYKMQSFGVKPDAVTFNTLARAYSRIGSTCTAEDMIIPRMLHNKVKPNV 531

Query: 169 --------------------KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV-L 207
                               +++ ++K  G     +VF +LI  +    + +   +VV L
Sbjct: 532 RTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDL 591

Query: 208 DAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
             E  VK      S L++A +S G       +Y ++ E G + +  A   L +     GE
Sbjct: 592 MEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYRDMLEGGIDPDIHAFSILAKGYARAGE 651

Query: 268 LNRLIQLLEEVH 279
             +  Q+L ++ 
Sbjct: 652 PEKAEQILNQMR 663



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/338 (18%), Positives = 148/338 (43%), Gaps = 24/338 (7%)

Query: 100 AYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159
           A+S+ + L E    P+   Y  ++    R+K     L ++ ++++  ++PD+  F+ +I+
Sbjct: 338 AHSIFNTLIEEGHKPSIITYTTLVTALTRQKHFHSLLSLISKVQKNGLRPDTILFNAIIN 397

Query: 160 NCS---NEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR---QVVLDAEIPV 213
             S   N +  +K +E++K +G + T   F  LI  Y   G+ E++    +++L  E+ +
Sbjct: 398 ASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLEMMLRDEM-L 456

Query: 214 KSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI-----ALIEHLNSEGEL 268
           +      + LV A  +  +  +A  +  +++  G  ++P AV           + S    
Sbjct: 457 QPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSFG--VKPDAVTFNTLARAYSRIGSTCTA 514

Query: 269 NRLI--QLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHF 326
             +I  ++L     P+  +  C  ++       ++  A     ++K+      + +    
Sbjct: 515 EDMIIPRMLHNKVKPN--VRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSL 572

Query: 327 SEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKE 386
            + F  I   D      G+  +  + +E G+ P       L+ A  +  D+KR   I+++
Sbjct: 573 IKGFLNINDMD------GVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYRD 626

Query: 387 YENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424
               G+  ++ ++  + K +  +G  + A ++L++M K
Sbjct: 627 MLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRK 664



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 74/400 (18%), Positives = 153/400 (38%), Gaps = 88/400 (22%)

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           I+  +     KP+  T+ ++++   + K F S  SL+  +++  L P   ++NAI+    
Sbjct: 341 IFNTLIEEGHKPSIITYTTLVTALTRQKHFHSLLSLISKVQKNGLRPDTILFNAIINASS 400

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLI----------------------------- 158
              ++  A+ + ++M+++  KP + TF+ LI                             
Sbjct: 401 ESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLEMMLRDEMLQPND 460

Query: 159 HNCS-------NEEDIIKYYE---QLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
             C+       N+  I + +    +++S G +     F  L  AY+  G    A  +++ 
Sbjct: 461 RTCNILVQAWCNQRKIEEAWNIVYKMQSFGVKPDAVTFNTLARAYSRIGSTCTAEDMIIP 520

Query: 209 AEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE---HLN 263
             +  K +  V++   +V+     G+  +A+  +  +KE G +       +LI+   ++N
Sbjct: 521 RMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNIN 580

Query: 264 SEGELNRLIQLLEEVH-DPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAM 322
               +  ++ L+EE    PD             V F  L +A   +  +K          
Sbjct: 581 DMDGVGEVVDLMEEFGVKPD------------VVTFSTLMNAWSSVGDMKR--------- 619

Query: 323 EYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHL 382
                   C+         +I  D+L     E G+ P       L      A + ++A  
Sbjct: 620 --------CE---------EIYRDML-----EGGIDPDIHAFSILAKGYARAGEPEKAEQ 657

Query: 383 IWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           I  +    G+  NV+ Y  +   + ++G  K A ++ +KM
Sbjct: 658 ILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYNKM 697



 Score = 45.8 bits (107), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 32/177 (18%), Positives = 80/177 (45%), Gaps = 3/177 (1%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++ P+  +   ++   C+  K+  AL    +M +  + P+    NS++       + + V
Sbjct: 526 KVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGV 585

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +  ++    +KP+  TF ++++    + D      +  D+ E  + P    ++ +  G
Sbjct: 586 GEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYRDMLEGGIDPDIHAFSILAKG 645

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE--DIIKYYEQLKSAGG 179
           Y R  + + A  +L +M +  V+P+   ++ +I   CS  E    ++ Y +++ + G
Sbjct: 646 YARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYNKMRGSVG 702


>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/279 (20%), Positives = 127/279 (45%), Gaps = 4/279 (1%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +I P + +Y  +I   C   K+  A++    M    + P   T  +++ AC    +F+  
Sbjct: 248 KIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFDTC 307

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +Y  +    L+    ++  +I    K +    AY++ + + +       ++Y A++  
Sbjct: 308 LSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDS 367

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQIT 182
           Y +   ++ A+ + + M+    +PD+ T+S L++  C +   +D ++ ++  ++ G  I 
Sbjct: 368 YSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAIN 427

Query: 183 KYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
              + +LI+     G  E A  +  + +E      S   +A++ ALA HG+   A+ ++ 
Sbjct: 428 AMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFG 487

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
            ++E GC+        LI+ L  E +    I+  +++ D
Sbjct: 488 RMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMID 526



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 126/276 (45%), Gaps = 23/276 (8%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S  +L+T+S DL+K+ +   V  ++    L+ +    NS++ +         +  ++  +
Sbjct: 153 SLIELLTFSADLVKIRL---VFFELKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRM 209

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
             + + P+  T+  +++  V     +SA  + + +    ++P    YN ++ GY +   +
Sbjct: 210 KENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKL 269

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMAL 189
           Q A+   ++ME  NVKPD  T+  LI  C +E D    +  Y +++  G +I  + +  +
Sbjct: 270 QKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLV 329

Query: 190 INAYT---TCGE----FEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           I        C E    FE   Q    A +       + +AL+ + + +G   +A+ ++E 
Sbjct: 330 IGGLCKQRKCMEAYAVFETMNQKGCRANVA------IYTALIDSYSKNGSMEEAMRLFER 383

Query: 243 IKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLE 276
           +K  G   EP AV    L+  L   G L+  ++L +
Sbjct: 384 MKNEG--FEPDAVTYSVLVNGLCKSGRLDDGMELFD 417



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/250 (21%), Positives = 104/250 (41%), Gaps = 5/250 (2%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+ + E+M      P   T + +++   +S   +    ++    +  +  N+  + S+I 
Sbjct: 377 AMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLID 436

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              K    + A +L +++ E      +  YNAI+    +   +  AL +   ME+     
Sbjct: 437 GLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQ 496

Query: 150 DSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
              TF+ LI     E   E+ IK+++++   G   T   F AL      CG+  +A + +
Sbjct: 497 TVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGLCLCGKVARACK-I 555

Query: 207 LDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
           LD   P+    E     +++ L    R  +A  + + I + G  +  R    LI  L   
Sbjct: 556 LDDLAPMGIIPETAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVLINALRKA 615

Query: 266 GELNRLIQLL 275
           G  + +I+L+
Sbjct: 616 GNSDLVIKLM 625


>gi|298714808|emb|CBJ25707.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1273

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 170/374 (45%), Gaps = 16/374 (4%)

Query: 7    ITPSSASYKKLITYSCDLLKVHVALDVVEQM-VQGE--LVPSTETINSILHACEESYEFN 63
            ++P+  +Y   +       +V  AL ++EQM   G+  L P   T NS+++AC ++ ++ 
Sbjct: 780  LSPNLINYNACVDVCAKTGEVDRALALLEQMQTSGDPALTPDLVTFNSVINACAKAGDWA 839

Query: 64   LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
            L   ++  I    LK + ++F + +    K  + ++A +LL  +K   L P A  Y + +
Sbjct: 840  LTLWLFSEIKAAGLKADIQSFNAALDACTKGSNPEAALALLKRMKSQGLEPDAISYQSAI 899

Query: 124  AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKS---AGGQ 180
                   D   A+M+L++MEQ  ++P    ++ +I     E D     E LKS    G  
Sbjct: 900  LACRAGGDGASAVMLLRDMEQQGLEPRDADYNLVIETVGREGDWAGALELLKSMKAEGIA 959

Query: 181  ITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
               Y + A + A       + AR ++ +  ++ +       ++++S  +  G T+ A+ +
Sbjct: 960  ADAYTYGAAVGACAKGRNPDLARALLEEMKDLGLTPTRFCWNSIISVHSRTGNTTAAMTL 1019

Query: 240  YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVR 297
             +E+K++    +     A++       + +   +LLEE++      +  C   L++   R
Sbjct: 1020 MDEMKQS-MPCDETTFSAMMHGCAQTRDWDAAGRLLEEMNAAGLKPNDACYYTLLVAACR 1078

Query: 298  FKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGL 357
              +L  A  L+K ++   KD      Y ++ +    A     D ++ L L++ +K + G+
Sbjct: 1079 AGELRLAEGLIKGMR---KDGAAPDLYSYTTL--SAACGRFHDWRMALRLIESMKID-GI 1132

Query: 358  PPSRKCLDFLLGAC 371
            P ++K     L AC
Sbjct: 1133 PATKKIYAAALAAC 1146



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 98/439 (22%), Positives = 166/439 (37%), Gaps = 85/439 (19%)

Query: 30   ALDVVEQMVQGELVPSTETINSILH--ACEESYEFNLVRRIYPMICHHNLKPNSETFRSM 87
            AL+++ +     L P+  T  + +   AC +   ++    I  M+    +KPN  T+  +
Sbjct: 699  ALELLAEARSQGLSPNIVTFTTAVRGLACND---WDKAEEILSMMKSRAIKPNEVTYTEL 755

Query: 88   ISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN- 146
            IS+  +  D   A + L+  +   L P    YNA +    +  +V  AL +L++M+ +  
Sbjct: 756  ISICGRSGDVHQALAQLERARRNGLSPNLINYNACVDVCAKTGEVDRALALLEQMQTSGD 815

Query: 147  --VKPDSQTFSYLIHNCSNEED---IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEK 201
              + PD  TF+ +I+ C+   D    +  + ++K+AG +     F A ++A T       
Sbjct: 816  PALTPDLVTFNSVINACAKAGDWALTLWLFSEIKAAGLKADIQSFNAALDACTK------ 869

Query: 202  ARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEH 261
                         S  E   AL+  + S G   DAI     I       +  + + L+  
Sbjct: 870  ------------GSNPEAALALLKRMKSQGLEPDAISYQSAILACRAGGDGASAVMLLRD 917

Query: 262  LNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCV-RFKQLSSATDLLKQLKDKFKDDEM 320
            +  +G          E  D DY       L++  V R    + A +LLK +K    +   
Sbjct: 918  MEQQGL---------EPRDADY------NLVIETVGREGDWAGALELLKSMK---AEGIA 959

Query: 321  AMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLG----------- 369
            A  Y +       A    PD  +   LL+ +KD LGL P+R C + ++            
Sbjct: 960  ADAYTYGAAVGACAKGRNPD--LARALLEEMKD-LGLTPTRFCWNSIISVHSRTGNTTAA 1016

Query: 370  -----------------------ACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAF 406
                                    C   RD   A  + +E   AGL  N   Y  +  A 
Sbjct: 1017 MTLMDEMKQSMPCDETTFSAMMHGCAQTRDWDAAGRLLEEMNAAGLKPNDACYYTLLVAA 1076

Query: 407  LASGNRKSASKLLSKMPKD 425
              +G  + A  L+  M KD
Sbjct: 1077 CRAGELRLAEGLIKGMRKD 1095



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 37/201 (18%), Positives = 87/201 (43%), Gaps = 5/201 (2%)

Query: 5    LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTET-INSILHACEESYEFN 63
            L +TP+   +  +I+          A+ ++++M Q   +P  ET  ++++H C ++ +++
Sbjct: 991  LGLTPTRFCWNSIISVHSRTGNTTAAMTLMDEMKQS--MPCDETTFSAMMHGCAQTRDWD 1048

Query: 64   LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               R+   +    LKPN   + +++    +  +   A  L+  +++    P    Y  + 
Sbjct: 1049 AAGRLLEEMNAAGLKPNDACYYTLLVAACRAGELRLAEGLIKGMRKDGAAPDLYSYTTLS 1108

Query: 124  AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK--YYEQLKSAGGQI 181
            A   R  D + AL +++ M+   +    + ++  +  C   E  I     E ++S G ++
Sbjct: 1109 AACGRFHDWRMALRLIESMKIDGIPATKKIYAAALAACGRGEAEIAEILLEMMRSQGVEL 1168

Query: 182  TKYVFMALINAYTTCGEFEKA 202
                    + A+   G  +KA
Sbjct: 1169 DDVGRSHALVAFGRGGRPDKA 1189


>gi|356527777|ref|XP_003532484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Glycine max]
          Length = 583

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 113/245 (46%), Gaps = 4/245 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  LI   C   K+  A +V+ +MV   + P   T N++  A  ++ E     
Sbjct: 159 VKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETERAE 218

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R+   + ++ +KPN  T   +IS   K  +   A   L  +KE+ + P   ++N+++ GY
Sbjct: 219 RLILKMPYNIVKPNERTCGIIISGYCKEGNMPEALRFLYRMKELGVDPNPVVFNSLIKGY 278

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITK 183
               D  G    L  ME+  +KPD  TFS +++  S+    E+  + +  +  AG +   
Sbjct: 279 LDTTDTNGVDEALTLMEEFGIKPDVVTFSTIMNAWSSAGLMENCEEIFNDMVKAGIEPDI 338

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           + +  L   Y   G+  KA  ++   ++  V+    + + ++S   + G+   A  + E+
Sbjct: 339 HAYSILAKGYVRAGQPRKAEALLTSMSKYGVQPNVVIFTTIISGWCAAGKMDRAFRLCEK 398

Query: 243 IKEAG 247
           + E G
Sbjct: 399 MHEMG 403



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 107/242 (44%), Gaps = 9/242 (3%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           K H A  V   + +    P+  T  +++ A      F  +  +   +  + +KP+S    
Sbjct: 37  KPHEAQAVFNNLTEEGHKPTLITYTTLVAALTRQKRFKSIPALLSKVADNGMKPDSILLN 96

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQ- 144
           +MI+   +    D A  +   +KE    PT S YN ++ G+        ++ +L+ M Q 
Sbjct: 97  AMINAFSESGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIAGRPYESMKLLEMMGQD 156

Query: 145 ANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEK 201
            NVKP+ +T++ LI   C+ +  E+      ++ ++G Q     +  +  AY   GE E+
Sbjct: 157 ENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETER 216

Query: 202 ARQVVLDAEIP---VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
           A +++L  ++P   VK        ++S     G   +A+     +KE G +  P    +L
Sbjct: 217 AERLIL--KMPYNIVKPNERTCGIIISGYCKEGNMPEALRFLYRMKELGVDPNPVVFNSL 274

Query: 259 IE 260
           I+
Sbjct: 275 IK 276



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/255 (21%), Positives = 108/255 (42%), Gaps = 19/255 (7%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P S     +I    +  KV  A+ + ++M +    P+T T N+++        F +  R 
Sbjct: 90  PDSILLNAMINAFSESGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKG------FGIAGRP 143

Query: 69  YP-------MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
           Y        M    N+KPN  T+  +I      K  + A+++L  +    + P    YN 
Sbjct: 144 YESMKLLEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNT 203

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAG 178
           +   Y +  + + A  ++ +M    VKP+ +T   +I     E ++   +++  ++K  G
Sbjct: 204 MARAYAQNGETERAERLILKMPYNIVKPNERTCGIIISGYCKEGNMPEALRFLYRMKELG 263

Query: 179 GQITKYVFMALINAYTTCGEFEKARQ-VVLDAEIPVKSRSEVKSALVSALASHGRTSDAI 237
                 VF +LI  Y    +     + + L  E  +K      S +++A +S G   +  
Sbjct: 264 VDPNPVVFNSLIKGYLDTTDTNGVDEALTLMEEFGIKPDVVTFSTIMNAWSSAGLMENCE 323

Query: 238 IVYEEIKEAGCNLEP 252
            ++ ++ +AG  +EP
Sbjct: 324 EIFNDMVKAG--IEP 336



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 69/347 (19%), Positives = 149/347 (42%), Gaps = 25/347 (7%)

Query: 100 AYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159
           A ++ ++L E    PT   Y  ++A   R+K  +    +L ++    +KPDS   + +I+
Sbjct: 41  AQAVFNNLTEEGHKPTLITYTTLVAALTRQKRFKSIPALLSKVADNGMKPDSILLNAMIN 100

Query: 160 NCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV--LDAEIPVK 214
             S     ++ +K ++++K  G + T   +  LI  +   G   ++ +++  +  +  VK
Sbjct: 101 AFSESGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIAGRPYESMKLLEMMGQDENVK 160

Query: 215 SRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNR-- 270
                 + L+ A  +  +  +A  V  ++  +G  ++P  V    +       GE  R  
Sbjct: 161 PNDRTYNILIQAWCTKKKLEEAWNVLHKMVASG--IQPDVVTYNTMARAYAQNGETERAE 218

Query: 271 --LIQLLEEVHDPDYWMDGCCRLIL--HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHF 326
             ++++   +  P+   +  C +I+  +C +   +  A   L ++K+   D    +    
Sbjct: 219 RLILKMPYNIVKPN---ERTCGIIISGYC-KEGNMPEALRFLYRMKELGVDPNPVV--FN 272

Query: 327 SEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKE 386
           S I   + TTD   V   L L+    +E G+ P       ++ A  +A  ++    I+ +
Sbjct: 273 SLIKGYLDTTDTNGVDEALTLM----EEFGIKPDVVTFSTIMNAWSSAGLMENCEEIFND 328

Query: 387 YENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVI 433
              AG+  ++ +Y  + K ++ +G  + A  LL+ M K       VI
Sbjct: 329 MVKAGIEPDIHAYSILAKGYVRAGQPRKAEALLTSMSKYGVQPNVVI 375


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 122/262 (46%), Gaps = 12/262 (4%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  LI+   +      AL++ ++M++  + P   T+ ++L AC +S    L R+++  I
Sbjct: 202 SWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWI 261

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
             H    N +   ++I L +K  + ++A  L + L   +++     +N ++ GY      
Sbjct: 262 DDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVIS----WNTLIGGYTHMNLY 317

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI-----IKYYEQLKSAGGQITKYVFM 187
           + AL++ +EM ++   P+  T   ++  C++   I     I  Y   +  G      +  
Sbjct: 318 KEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRT 377

Query: 188 ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           +LI+ Y  CG+ E A+QV  D+ +     S   +A++   A HGR + A  ++  +++ G
Sbjct: 378 SLIDMYAKCGDIEAAQQV-FDSMLNRSLSSW--NAMIFGFAMHGRANPAFDIFSRMRKDG 434

Query: 248 CNLEPRAVIALIEHLNSEGELN 269
              +    + L+   +  G L+
Sbjct: 435 IEPDDITFVGLLSACSHSGMLD 456



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 82/196 (41%), Gaps = 30/196 (15%)

Query: 37  MVQGELVPSTETINSILHACEESYEFNLVRRIYPMI----------CHHNLKP------- 79
           M+   LVP++ T   +L AC +S  F   ++I+  +           H +L         
Sbjct: 94  MISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGR 153

Query: 80  --------NSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM--YNAIMAGYFRK 129
                   +  + R ++S    IK + S   +    K  + +P   +  +NA+++GY   
Sbjct: 154 XEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAET 213

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVF 186
            + + AL + KEM + NVKPD  T   ++  C+    I    + +  +   G      + 
Sbjct: 214 GNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIV 273

Query: 187 MALINAYTTCGEFEKA 202
            ALI+ Y  CGE E A
Sbjct: 274 NALIDLYIKCGEVETA 289


>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 702

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 107/215 (49%), Gaps = 10/215 (4%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P   ++ S+L AC E  +  L R +   +    +K NS    ++IS+  K  +  S+  +
Sbjct: 217 PDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRI 276

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163
            D +   + +     +NA ++ Y +      A+ +   M++  V P+  T + ++  C++
Sbjct: 277 FDGMPSRDFIT----WNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACAS 332

Query: 164 --EEDIIKYYEQLKSAGG-QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK 220
               D+ K  ++  +  G Q   +V  ALI+ Y  CG  E A++V  D  +P K+ +   
Sbjct: 333 IGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFND--MPRKNDASW- 389

Query: 221 SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255
           +A++SALASHG+  +A+ ++E + + G +  P  +
Sbjct: 390 NAMISALASHGKAKEALSLFERMSDEGGSARPNDI 424



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 93/444 (20%), Positives = 184/444 (41%), Gaps = 27/444 (6%)

Query: 7   ITPSSASYKKLITYSCDLLKVH---VALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           ITP    Y   I         H   + L +  QM    + P+  T   +  AC    E  
Sbjct: 75  ITPHPNDYAFNIMLRATTTTWHDYPLTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIR 134

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
           + R  +  +    L  +  T  SM+++  +  +   A  + D++ E +L+     +N+++
Sbjct: 135 MARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVS----WNSLL 190

Query: 124 AGYFRKKDVQGALMVLKEM-EQANVKPDSQTFSYLIHNCSNEED--IIKYYEQ-LKSAGG 179
           +GY +    + A+ V   + E++  +PD  +   ++  C    D  + ++ E  +   G 
Sbjct: 191 SGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGM 250

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAII 238
           ++  Y+  ALI+ Y+ CGE   +R+ + D    + SR  +  +A +SA A +G   +AI 
Sbjct: 251 KVNSYIGSALISMYSKCGELVSSRR-IFDG---MPSRDFITWNAAISAYAQNGMADEAIS 306

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRF 298
           ++  +KE G +     + A++    S G L+   Q+ E         D     I      
Sbjct: 307 LFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHD-----IFVATAL 361

Query: 299 KQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLP 358
             + +    L+  +  F D     +  ++ +   +A+      +  L L + + DE G  
Sbjct: 362 IDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGK--AKEALSLFERMSDEGGSA 419

Query: 359 -PSRKCLDFLLGACVNARDLKRAHLIWKEYENA-GLPYNVLSYLWMYKAFLASGNRKSAS 416
            P+      LL ACV+A  +   + ++       GL   +  Y  M      +G+   A 
Sbjct: 420 RPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAW 479

Query: 417 KLLSKMPK--DDPHVRFVIQACKQ 438
            ++ KMP+  D+  +  +  AC++
Sbjct: 480 DVIEKMPEKPDNVTLGALHSACQR 503


>gi|299473436|emb|CBN77833.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1139

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 112/246 (45%), Gaps = 10/246 (4%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           ITP   +   LI           AL V +QM +  + PS  T N+++ AC  + + +  R
Sbjct: 160 ITPDVQAINSLINAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLIDACGRAGDIDRAR 219

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++  +    L PN  TF ++I  +      D A+S L +++   L P    Y+A++   
Sbjct: 220 QVFSRLSQAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRARGLEPNRVTYSALINAC 279

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITK 183
            R   +  A   L EM    ++P+  T++ LI  C   +++    K +++++  G     
Sbjct: 280 GRAGQLARAFQTLDEMFGTGIEPNVVTWTTLIDACGKGKELEWSFKLFKEMRERGTVPNG 339

Query: 184 YVFMALINAYTTCGEFEKARQVV---LDAEIPVKSRSEVK-SALVSALASHGRTSDAIIV 239
               AL++A     E + A  V+   LD  I     +EV  ++L++  A  G+   A IV
Sbjct: 340 VTCSALMDACLKADELDLAFAVLEHMLDVGI---EPTEVTYTSLLTQCARLGQADRAGIV 396

Query: 240 YEEIKE 245
            +E+ +
Sbjct: 397 LDELNK 402



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 85/187 (45%), Gaps = 3/187 (1%)

Query: 23  DLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSE 82
           D  ++   +   E M+  +L P+  T ++++          L  R +  +    + P+ +
Sbjct: 106 DAGRIDDCVAAYEAMLACQLRPTIVTFSTLISRAGACRRVRLAERFFREMLEAGITPDVQ 165

Query: 83  TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM 142
              S+I+   K    D A  + D +    + P+   +N ++    R  D+  A  V   +
Sbjct: 166 AINSLINAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLIDACGRAGDIDRARQVFSRL 225

Query: 143 EQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEF 199
            QA + P+ +TFS LIH+ + +   ++   + +++++ G +  +  + ALINA    G+ 
Sbjct: 226 SQAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRARGLEPNRVTYSALINACGRAGQL 285

Query: 200 EKARQVV 206
            +A Q +
Sbjct: 286 ARAFQTL 292



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/169 (20%), Positives = 82/169 (48%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++ P+  ++  LI+ +    +V +A     +M++  + P  + INS+++A  ++   +  
Sbjct: 124 QLRPTIVTFSTLISRAGACRRVRLAERFFREMLEAGITPDVQAINSLINAFAKAGSPDQA 183

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            +++  +  + + P+  TF ++I    +  D D A  +   L +  L P    ++A++  
Sbjct: 184 LKVFDQMSRYGVTPSVITFNTLIDACGRAGDIDRARQVFSRLSQAGLSPNDRTFSALIHS 243

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQL 174
           +  +  V  A   L+EM    ++P+  T+S LI+ C     + + ++ L
Sbjct: 244 HAVQGQVDEAFSWLQEMRARGLEPNRVTYSALINACGRAGQLARAFQTL 292



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 101/215 (46%), Gaps = 18/215 (8%)

Query: 112 LMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDII 168
           L PT   ++ +++     + V+ A    +EM +A + PD Q  + LI+      + +  +
Sbjct: 125 LRPTIVTFSTLISRAGACRRVRLAERFFREMLEAGITPDVQAINSLINAFAKAGSPDQAL 184

Query: 169 KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSAL 227
           K ++Q+   G   +   F  LI+A    G+ ++ARQV    ++  +       SAL+ + 
Sbjct: 185 KVFDQMSRYGVTPSVITFNTLIDACGRAGDIDRARQVFSRLSQAGLSPNDRTFSALIHSH 244

Query: 228 ASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVH----DP 281
           A  G+  +A    +E++  G  LEP  V   ALI      G+L R  Q L+E+     +P
Sbjct: 245 AVQGQVDEAFSWLQEMRARG--LEPNRVTYSALINACGRAGQLARAFQTLDEMFGTGIEP 302

Query: 282 DY--WMDGCCRLILHCVRFKQLSSATDLLKQLKDK 314
           +   W      LI  C + K+L  +  L K+++++
Sbjct: 303 NVVTWTT----LIDACGKGKELEWSFKLFKEMRER 333



 Score = 46.6 bits (109), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 67/146 (45%), Gaps = 6/146 (4%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN----LVRRIYPMICHHNLKPNS 81
           +V  A  V+E MV+    P  ET   +L+A + +   +    L+ R       H  + N 
Sbjct: 557 QVDAAFKVLEGMVERRDSPDGETWLLLLNAVDTAGALDKAVELMERSRAE--GHGSEINE 614

Query: 82  ETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKE 141
            T+ +++    + K    A+ ++  ++E  + PT   Y A+M      +D + A+ V + 
Sbjct: 615 LTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEGTYLALMEVCRHSRDSKAAVEVFEA 674

Query: 142 MEQANVKPDSQTFSYLIHNCSNEEDI 167
           ME   V+P  ++++ L+   S E  +
Sbjct: 675 METEGVRPGVRSYTSLLKAISEENTL 700


>gi|147843358|emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera]
          Length = 714

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 131/284 (46%), Gaps = 11/284 (3%)

Query: 6   EITPSSASYKKLITYS------CDLLKVHVALDVVEQMV-QGELVPSTETINSILHACEE 58
           E+  S  SY  LITYS      C   ++  A+++ E+MV + +++P   T N++++    
Sbjct: 268 EMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCH 327

Query: 59  SYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM 118
             + +   +I   +  +   PN   + ++++   K    + A  + D++K + L P    
Sbjct: 328 GXKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVG 387

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLK 175
           Y  ++  + R   V  A+ +LK+M +   + D+ TF+ ++     E   E+     E+L 
Sbjct: 388 YTTLINFFCRAGRVDEAMELLKDMXENKCRADTVTFNVILGGLCREGRFEEAXGMLERLP 447

Query: 176 SAGGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTS 234
             G  + K  +  ++N+    GE +KA Q+V L     V       + L+  L   G+  
Sbjct: 448 YEGVYLNKASYRIVLNSLCREGELQKATQLVGLMLGRGVLPHFATSNELLVHLCEAGKVG 507

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           DA++    + E G   EP +   L+E +  E +L    +LL+++
Sbjct: 508 DAVMALLGLLELGFKPEPNSWALLVELICRERKLLPAFELLDDL 551



 Score = 38.9 bits (89), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 55/256 (21%), Positives = 120/256 (46%), Gaps = 30/256 (11%)

Query: 48  TINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSM------ISLNVKIKD-FDSA 100
           T  +ILH   +S +F  +  +   + +   K +   F ++      +SL+ ++ + FD+ 
Sbjct: 165 TYATILHKLAKSKKFQAIDAVLHQMTYETCKFHEGIFLNLMKHFSKLSLHERVVEMFDAI 224

Query: 101 YSLLDDLKEMNLMPTA------SMYNAIMAGYFRKKDVQGALMVLKEMEQANVK-PDSQT 153
             ++ +   +  + T       S  ++I A   +  D+  A  V++EM++++V  P+  T
Sbjct: 225 XPIVREKPSLKAISTCLNLLVESNQSSITA---KNGDIDSAFEVVEEMKKSHVSYPNLIT 281

Query: 154 FSYLIHN-CSNE--EDIIKYYEQLKSAGGQI--TKYVFMALINAYTTCGEFEKARQVVLD 208
           +S LI+  C +   ++ I+ +E++ S   QI      + ALIN +    + ++A +++  
Sbjct: 282 YSTLINGLCGSGRLKEAIELFEEMVSKD-QILPDALTYNALINGFCHGXKVDRALKIM-- 338

Query: 209 AEIPVKSRSEVK----SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
            E   K+         SAL++     GR  +A  V++E+K  G   +      LI     
Sbjct: 339 -EFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCR 397

Query: 265 EGELNRLIQLLEEVHD 280
            G ++  ++LL+++ +
Sbjct: 398 AGRVDEAMELLKDMXE 413


>gi|125555457|gb|EAZ01063.1| hypothetical protein OsI_23091 [Oryza sativa Indica Group]
          Length = 552

 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/287 (20%), Positives = 136/287 (47%), Gaps = 17/287 (5%)

Query: 6   EITPSSASYKKLITYSCDLLK-------VHVALDVVEQMVQG-ELVPSTETINSILHACE 57
            + P+  S+  L+   C  L        + VAL ++ +++ G +L P   T ++++ A  
Sbjct: 71  RLAPTLLSFNLLLKCVCSSLVPRDPRRYLDVALRILHEIIPGWDLAPDKFTYSTVVSALA 130

Query: 58  ESYEFN-LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTA 116
           ++   +  V  ++ M+    +   +E F  ++   ++  D   A  L + ++    +PTA
Sbjct: 131 DAGRVDDAVALVHEMVADGVVA--AEAFNPVLRAMLRAGDVKGAAKLFEFMQLKGCVPTA 188

Query: 117 SMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQ 173
           + YN ++ G         A+ V++ ME+  V P   T+  ++     C   +D  K  E+
Sbjct: 189 ATYNVLVHGLLVCGRAGAAMGVMRRMEREGVVPGVMTYGAVVDGLVRCGRVKDAWKVAEE 248

Query: 174 LKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEI--PVKSRSEVKSALVSALASHG 231
           ++  G    ++V+  +I  +   GE + A + V +A +  PV+    + SA++  LA+ G
Sbjct: 249 MERNGLARNEFVYSTVITGFCKSGEIDCALK-VWEAMVASPVRPNVVLYSAMIGGLANFG 307

Query: 232 RTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           + ++A +++ E+ ++ C        ++I+     G+ +R + + EE+
Sbjct: 308 KMTEAELLFREMIDSKCAPNIITYGSMIQGYFKIGDTSRALSVWEEM 354



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 137/300 (45%), Gaps = 39/300 (13%)

Query: 43  VPSTETINSILHA---CEES-YEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFD 98
           VP+  T N ++H    C  +     ++RR+        + P   T+ +++   V+     
Sbjct: 185 VPTAATYNVLVHGLLVCGRAGAAMGVMRRME----REGVVPGVMTYGAVVDGLVRCGRVK 240

Query: 99  SAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            A+ + ++++   L     +Y+ ++ G+ +  ++  AL V + M  + V+P+   +S +I
Sbjct: 241 DAWKVAEEMERNGLARNEFVYSTVITGFCKSGEIDCALKVWEAMVASPVRPNVVLYSAMI 300

Query: 159 HNCSN----EEDIIKYYEQL--KSAGGQITKYVFMALINAYTTCGEFEKARQV---VLDA 209
              +N     E  + + E +  K A   IT   + ++I  Y   G+  +A  V   ++ A
Sbjct: 301 GGLANFGKMTEAELLFREMIDSKCAPNIIT---YGSMIQGYFKIGDTSRALSVWEEMIGA 357

Query: 210 EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN 269
                + S   S L++ L + GR  DA++V++ + + GC  +  A  ++I+ L   G ++
Sbjct: 358 GCMPNAVS--YSILINGLCNVGRLKDAMMVWKHMLDRGCAPDTIAYTSMIKGLCVSGMVD 415

Query: 270 RLIQLLEEV-----HDPD-----YWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDE 319
             ++L  ++      DPD       +DG   L+L     K L  A DLL ++ D+  D +
Sbjct: 416 GGLRLFYDMLASGHADPDVISYNVLLDG---LLLA----KDLPRAMDLLNRMLDQGCDPD 468



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/205 (18%), Positives = 84/205 (40%), Gaps = 3/205 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  ++       +V  A  V E+M +  L  +    ++++    +S E +   
Sbjct: 219 VVPGVMTYGAVVDGLVRCGRVKDAWKVAEEMERNGLARNEFVYSTVITGFCKSGEIDCAL 278

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++  +    ++PN   + +MI           A  L  ++ +    P    Y +++ GY
Sbjct: 279 KVWEAMVASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMIDSKCAPNIITYGSMIQGY 338

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITK 183
           F+  D   AL V +EM  A   P++ ++S LI+   N    +D +  ++ +   G     
Sbjct: 339 FKIGDTSRALSVWEEMIGAGCMPNAVSYSILINGLCNVGRLKDAMMVWKHMLDRGCAPDT 398

Query: 184 YVFMALINAYTTCGEFEKARQVVLD 208
             + ++I      G  +   ++  D
Sbjct: 399 IAYTSMIKGLCVSGMVDGGLRLFYD 423



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 4/168 (2%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y  +IT  C   ++  AL V E MV   + P+    ++++       +      ++  + 
Sbjct: 261 YSTVITGFCKSGEIDCALKVWEAMVASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMI 320

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
                PN  T+ SMI    KI D   A S+ +++     MP A  Y+ ++ G      ++
Sbjct: 321 DSKCAPNIITYGSMIQGYFKIGDTSRALSVWEEMIGAGCMPNAVSYSILINGLCNVGRLK 380

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHN-CSN---EEDIIKYYEQLKSA 177
            A+MV K M      PD+  ++ +I   C +   +  +  +Y+ L S 
Sbjct: 381 DAMMVWKHMLDRGCAPDTIAYTSMIKGLCVSGMVDGGLRLFYDMLASG 428


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 89/432 (20%), Positives = 170/432 (39%), Gaps = 49/432 (11%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
            P    +  L +   DL  +  A+    +M +  + P T + N +LH   +  + + V+R
Sbjct: 189 VPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKR 248

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
            +  +     +P   T+  MI    K  D ++A  L +++K   L+P    YN+++ G+ 
Sbjct: 249 FFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFG 308

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC----SNEEDIIKYYEQLKSAGGQITK 183
           +   +   +   +EM+    +PD  T++ LI NC          +++Y ++K  G +   
Sbjct: 309 KVGRLDDTVCFFEEMKDMCCEPDVITYNALI-NCFCKFGKLPIGLEFYREMKGNGLKPNV 367

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             +  L++A+   G  ++A +  +D   + +       ++L+ A    G  SDA  +  E
Sbjct: 368 VSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNE 427

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW--MDGCCRLILHCVRFKQ 300
           + + G         ALI+ L     +    +L  ++        +     LI   V+ K 
Sbjct: 428 MLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKN 487

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS 360
           +  A +LL +LK +                            I  DLL +          
Sbjct: 488 MDRALELLNELKGR---------------------------GIKPDLLLYGT-------- 512

Query: 361 RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420
                F+ G C +   ++ A ++  E +  G+  N L Y  +  A+  SGN      LL 
Sbjct: 513 -----FIWGLC-SLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLD 566

Query: 421 KMPKDDPHVRFV 432
           +M + D  V  V
Sbjct: 567 EMKELDIEVTVV 578



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 63/318 (19%), Positives = 134/318 (42%), Gaps = 10/318 (3%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +  + P + S   L+     L K        + M+     P+  T N ++    +  +  
Sbjct: 220 RFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVE 279

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             R ++  +    L P++ T+ SMI    K+   D      +++K+M   P    YNA++
Sbjct: 280 AARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALI 339

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQ 180
             + +   +   L   +EM+   +KP+  ++S L+     E   +  IK+Y  ++  G  
Sbjct: 340 NCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLV 399

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIV 239
             +Y + +LI+A    G    A ++  +  ++ V+      +AL+  L    R  +A  +
Sbjct: 400 PNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEEL 459

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYWMDGCCRLILHC 295
           + ++  AG      +  ALI        ++R ++LL E+      PD  + G    I   
Sbjct: 460 FGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYG--TFIWGL 517

Query: 296 VRFKQLSSATDLLKQLKD 313
              +++ +A  ++ ++K+
Sbjct: 518 CSLEKIEAAKVVMNEMKE 535



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/275 (19%), Positives = 127/275 (46%), Gaps = 11/275 (4%)

Query: 12  ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPM 71
            +Y  LI   CD  ++  A ++  +M    ++P+  + N+++H   ++   +    +   
Sbjct: 438 VTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNE 497

Query: 72  ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131
           +    +KP+   + + I     ++  ++A  +++++KE  +   + +Y  +M  YF+  +
Sbjct: 498 LKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGN 557

Query: 132 VQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGG-QITKYVFM 187
               L +L EM++ +++    TF  LI   C N+     + Y+ ++ +  G Q    +F 
Sbjct: 558 PTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFT 617

Query: 188 ALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
           A+I+      + E A     Q+V    +P ++     ++L+      G   +A+ + +++
Sbjct: 618 AMIDGLCKDNQVEAATTLFEQMVQKGLVPDRT---AYTSLMDGNFKQGNVLEALALRDKM 674

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            E G  L+  A  +L+  L+   +L +    LEE+
Sbjct: 675 AEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEM 709



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/315 (20%), Positives = 126/315 (40%), Gaps = 50/315 (15%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVRR 67
           P   +Y  LI   C   K+ + L+   +M    L P+  + ++++ A C+E      ++ 
Sbjct: 330 PDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIK- 388

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNL--------------- 112
            Y  +    L PN  T+ S+I  N KI +   A+ L +++ ++ +               
Sbjct: 389 FYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLC 448

Query: 113 --------------------MPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
                               +P  + YNA++ G+ + K++  AL +L E++   +KPD  
Sbjct: 449 DAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLL 508

Query: 153 TFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV--- 206
            +   I   CS E  E       ++K  G +    ++  L++AY   G   +   ++   
Sbjct: 509 LYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEM 568

Query: 207 --LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI-KEAGCNLEPRAVIALIEHLN 263
             LD E+ V +       L+  L  +   S A+  +  I  + G         A+I+ L 
Sbjct: 569 KELDIEVTVVTF----CVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLC 624

Query: 264 SEGELNRLIQLLEEV 278
            + ++     L E++
Sbjct: 625 KDNQVEAATTLFEQM 639


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 89/431 (20%), Positives = 175/431 (40%), Gaps = 30/431 (6%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  L+   C + ++  A  +++QMV+    P T T N I+      +      
Sbjct: 380 VQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAF 439

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R+   + +  + PN  T+  MI    +  + + A  LL+++    L P A +Y  +++GY
Sbjct: 440 RLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGY 499

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLKSAGGQITK 183
            R+ +V  A  +  +M + NV PD   ++ LI   S     E+  KY+ Q++  G    +
Sbjct: 500 CREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNE 559

Query: 184 YVFMALINAYTTCGEFEKARQVV---LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
           + +  LI+ Y   G+ E A Q+V   LD  +  K    +   L+ +             +
Sbjct: 560 FTYSGLIHGYLKNGDLESAEQLVQRMLDTGL--KPNDVIYIDLLESYFKSDDIEKVSSTF 617

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE---------EVHDPDYWMDGCCRL 291
           + + + G  L+ R    LI +L+S G +    ++L          +VH     + G C+ 
Sbjct: 618 KSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKT 677

Query: 292 ILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFI 351
                       A  +L ++  K  D  +       +  C+       D+    ++   I
Sbjct: 678 -------ADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSG-----DISYARNVFNSI 725

Query: 352 KDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGN 411
             + GL P+      L+       D+  A  ++ E    G+  +   Y  +     ++G+
Sbjct: 726 LAK-GLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGD 784

Query: 412 RKSASKLLSKM 422
            + A  L+ +M
Sbjct: 785 LEQAMFLIEEM 795



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 90/396 (22%), Positives = 162/396 (40%), Gaps = 29/396 (7%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P++  Y  LI+  C    V +A ++ ++M +  ++P     NS++    +        
Sbjct: 485 LKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEEST 544

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           + +  +    L PN  T+  +I   +K  D +SA  L+  + +  L P   +Y  ++  Y
Sbjct: 545 KYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESY 604

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS---NEEDIIKYYEQLKSAGGQITK 183
           F+  D++      K M    V  D++ +  LIHN S   N E   +    ++  G     
Sbjct: 605 FKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDV 664

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           +V+ +LI+      + EKA  ++ + ++  V       +AL+  L   G  S A  V+  
Sbjct: 665 HVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNS 724

Query: 243 IKEAGCNLEPRAV--IALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQ 300
           I   G  L P  V   +LI+     G+++    L  E+       D      ++ V    
Sbjct: 725 ILAKG--LVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDA----FVYSVLTTG 778

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFS--------EIFCQIATTDPPDVQIGLDLLQFIK 352
            SSA DL + +   F  +EM +  H S        + FC+        +Q  L LL  I 
Sbjct: 779 CSSAGDLEQAM---FLIEEMFLRGHASISSFNNLVDGFCKRGK-----MQETLKLLHVIM 830

Query: 353 DELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYE 388
              GL P+   ++ ++     A  L   H I+ E +
Sbjct: 831 GR-GLVPNALTIENIISGLSEAGKLSEVHTIFVELQ 865



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/295 (21%), Positives = 119/295 (40%), Gaps = 45/295 (15%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           +V  A +VV  M    + PS    N++L     +    L+ ++   +    + P+  T+ 
Sbjct: 189 RVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYS 248

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           ++I    K+++FD+A  +L +++E         YN ++AG  R   V+ A    K+ME  
Sbjct: 249 TLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDY 308

Query: 146 NVKPDSQTFSYLIH------------------NCS--------------------NEEDI 167
            + PD  T+  LI+                  +C+                    N ++ 
Sbjct: 309 GLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEA 368

Query: 168 IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSAL 223
            K  +++ +AG Q  K  +  L+      G+ ++A    +Q+V D+  P    +   + +
Sbjct: 369 FKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRP---DTITYNLI 425

Query: 224 VSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           +     H    DA  +  E++ AG +        +I  L   GE  +   LLEE+
Sbjct: 426 IEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEM 480



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/240 (20%), Positives = 111/240 (46%), Gaps = 4/240 (1%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           ++ +Y  LI   C    V  A    + M    LVP   T  ++++   +S   N  + + 
Sbjct: 278 NTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALL 337

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
             +    LKPN   + ++I   ++  + D A+ ++ ++    + P    Y+ ++ G  + 
Sbjct: 338 DEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKM 397

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVF 186
             +  A ++LK+M + + +PD+ T++ +I       +++D  +   ++++AG     Y +
Sbjct: 398 GQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTY 457

Query: 187 MALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
             +I+     GE EKA  ++ +     +K  + V + L+S     G  S A  +++++ +
Sbjct: 458 SIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTK 517


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 99/204 (48%), Gaps = 3/204 (1%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           ++ ++P   +Y  +I   C   +V  A DV +QMV+  + P+  T N+I+    ++ E +
Sbjct: 218 EMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVD 277

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
           +   ++  +    +KP++ T+ ++I    K +  D A  +   + +  + P    YN I+
Sbjct: 278 MAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTII 337

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQ 180
            G  + + +  A  V ++M    VKPD+ T++ +I      + + +    ++Q+   G +
Sbjct: 338 DGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVK 397

Query: 181 ITKYVFMALINAYTTCGEFEKARQ 204
                +  LI+ Y + G++E+  Q
Sbjct: 398 PNNGTYNCLIHGYLSTGQWEEVVQ 421



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/304 (20%), Positives = 122/304 (40%), Gaps = 20/304 (6%)

Query: 1   MHAKLEITP------SSASYKKLITYSCDLLKVHVALDVVEQMVQGE---LVPSTETINS 51
           MH  L   P         SY  L+   CD  +   A +++  MV G+     P   + N 
Sbjct: 139 MHVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNI 198

Query: 52  ILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMN 111
           +++     +    V + Y +     + P+  T+ ++I    K ++ D A  +   + E  
Sbjct: 199 VING---FFNEGQVDKAYSLFLEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKG 255

Query: 112 LMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK-- 169
           + P    YN I+ G  + ++V  A  V ++M    VKP + T++ +I      + + +  
Sbjct: 256 VKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAE 315

Query: 170 -YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSAL 227
             ++Q+   G +     +  +I+        +KA  V     +  VK  +   + ++  L
Sbjct: 316 GVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGL 375

Query: 228 ASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV--HD--PDY 283
                   A  V++++ + G          LI    S G+   ++Q ++E+  HD  PD 
Sbjct: 376 CKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDV 435

Query: 284 WMDG 287
           +  G
Sbjct: 436 FTYG 439



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/213 (21%), Positives = 94/213 (44%), Gaps = 6/213 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           ++P+  +Y  LI   C L +V  A+    QM+   + P+    NS+++      ++  V 
Sbjct: 536 LSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVE 595

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  + +  ++P+   F +++    K      A  L+D +  M L P    YN ++ G+
Sbjct: 596 ELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGH 655

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY---EQLKSAGGQITK 183
                +  A+ +L  M  A +KP+  +++ L+H       I   Y    ++   G     
Sbjct: 656 CFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGV 715

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSR 216
             +  ++N     G F +AR++ ++    +KSR
Sbjct: 716 ETYNTILNGLFRSGRFSEARELYVNM---IKSR 745



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/200 (21%), Positives = 91/200 (45%), Gaps = 5/200 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF-NLV 65
           + P + +Y  +I   C    V  A  V +QM+   + P+  T N ++H    + ++  +V
Sbjct: 361 VKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVV 420

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           +RI  M   H+L+P+  T+  ++    K    + A SL D +    + P+ ++Y  ++ G
Sbjct: 421 QRIKEM-SAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHG 479

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQIT 182
           Y +K  +     +L  M    + P+ + F+ +I   +     ++++  + ++K  G    
Sbjct: 480 YGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPN 539

Query: 183 KYVFMALINAYTTCGEFEKA 202
              +  LI+A    G  + A
Sbjct: 540 VVTYGTLIDALCKLGRVDDA 559



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/255 (18%), Positives = 109/255 (42%), Gaps = 8/255 (3%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++ P   +Y  L+ Y C   K + A  + + M++  + PS      +LH   +    + +
Sbjct: 430 DLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEM 489

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +  ++  + + PN   F ++I    K    D    +   +K+  L P    Y  ++  
Sbjct: 490 HDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDA 549

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQIT 182
             +   V  A++   +M    V P++  F+ L++  C+ +  E + + + ++ + G +  
Sbjct: 550 LCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPD 609

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVY 240
              F  ++      G   +AR+++ D+ + +  + +V S   L+       R  +A+ + 
Sbjct: 610 IVFFNTVLCNLCKEGRVMEARRLI-DSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLL 668

Query: 241 EEIKEAGCNLEPRAV 255
           + +  AG  L+P  V
Sbjct: 669 DGMVSAG--LKPNIV 681



 Score = 42.4 bits (98), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 3/177 (1%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           + + P   SY  LI   C   ++  A+ +++ MV   L P+  + N++LH   ++   + 
Sbjct: 639 MGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDN 698

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
              ++  +    + P  ET+ ++++   +   F  A  L  ++ +   + +   Y+ I+ 
Sbjct: 699 AYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILD 758

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAG 178
           G+ +      A  + + +   +++ D  TF+ +I        +ED +  +  + + G
Sbjct: 759 GFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANG 815


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 117/241 (48%), Gaps = 11/241 (4%)

Query: 30  ALDVVEQMVQ-GELVPSTETINSILHACEESYEFNLVRRIYP-MICHHNLKPNSETFRSM 87
           +  V ++MV+  E+ P+  T+  ++ AC ES    L R I+  M+    L+   +   ++
Sbjct: 190 SFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAAL 249

Query: 88  ISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANV 147
           I+L VK    D A  L D++ E N +    ++N+++ GY +   +   + +L+EM  +N+
Sbjct: 250 INLYVKCGYLDGARKLFDEIPEKNTV----VWNSLICGYCQIGSLNEVIELLREMHLSNL 305

Query: 148 KPDSQTFSYLIHNCS--NEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           KPD  T S ++  C+     ++  +  +     G    ++  ALI+ Y  CG    AR+V
Sbjct: 306 KPDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGIWDVFIGTALIDMYAKCGFIGAARKV 365

Query: 206 VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
                   +      +A++S  ASHG+   AI ++ E++E+G   +    +A++      
Sbjct: 366 FDQMN---ERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHS 422

Query: 266 G 266
           G
Sbjct: 423 G 423



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 108/230 (46%), Gaps = 19/230 (8%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           ++  +  LI   C +  ++  ++++ +M    L P   T++ +L AC +   FNL   ++
Sbjct: 273 NTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSACAQMGAFNLGNWVH 332

Query: 70  PMICHHNLKPNSETF--RSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
                   K   + F   ++I +  K     +A  + D + E N+    + +NAI++GY 
Sbjct: 333 RFA---EKKGIWDVFIGTALIDMYAKCGFIGAARKVFDQMNERNV----ATWNAILSGYA 385

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYE---QLKSAGGQI 181
                + A+ +  EM ++  +PDS TF  ++H C++    E+  +Y++   Q      ++
Sbjct: 386 SHGQAESAIELFSEMRESGARPDSITFLAVLHACAHSGLVENGKQYFDLMLQYYKIPPRV 445

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHG 231
             Y  M  ++     G  ++AR+++    + V+    V  AL+SA + HG
Sbjct: 446 EHYGCM--VDLLGRAGLLQEARELI--KMMVVEPNVVVWGALLSACSIHG 491



 Score = 41.6 bits (96), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 11/138 (7%)

Query: 114 PTASMYNAIMAGYFRKKDVQGALMVLKEMEQA-NVKPDSQTFSYLIHNCSNEEDIIKYYE 172
           P   +YNA++  Y   +    A+ +  +M    N+  D  T+ ++   C+++  + K  E
Sbjct: 67  PDGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKGKE 126

Query: 173 Q---LKSAGGQITKYVFMALINAYTTCGEFEKARQVV--LDAEIPVKSRSEVKSALVSAL 227
               +   G ++  ++  +L+N Y  CGE   A+QV    DA+  V       +AL++  
Sbjct: 127 VHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVV-----FWNALITGY 181

Query: 228 ASHGRTSDAIIVYEEIKE 245
           A  G   D+  V++E+ E
Sbjct: 182 ARQGMVLDSFGVFKEMVE 199


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 146/352 (41%), Gaps = 47/352 (13%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELV-PSTETINSILHACEESYEFNLVRR 67
           PS  +Y  LI   C+  +   ALD+ + M + + V P   T N+++     S      R+
Sbjct: 43  PSLVTYNVLINSRCNAGEFGKALDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARK 102

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +   +   N+  N  T+ S+I   VK    + +Y +L+++      P    +N +M G+ 
Sbjct: 103 LLSEMRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFA 162

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN----EEDIIKYYEQLKSAGGQITK 183
           R  +++ A  V + M ++  KPD+ ++  LIH  +     +E +    E    A G +  
Sbjct: 163 RSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPN 222

Query: 184 YV-FMALINAYTTCGEFEKARQV----------------------VLDAEIPVKSR---- 216
            + F  LI+     GE EKA +V                      +  AE  +++R    
Sbjct: 223 VITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFE 282

Query: 217 ----------SEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNS 264
                     +   ++L++     G   +A  +Y E+   G  L+P  V    LI+    
Sbjct: 283 KMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREM-SGGAGLQPTIVTFNTLIDGFCK 341

Query: 265 EGELNRLIQLLEEVHDPDYWMDGCCR--LILHCVRFKQLSSATDLLKQLKDK 314
            G+L R  +L+ E+       D C    LI    R  +L  A ++ KQ+++K
Sbjct: 342 LGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREK 393



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 118/289 (40%), Gaps = 23/289 (7%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQ--GELVPSTETINSILHACEESYEFNLVR 66
           P + SY  LI     + K+  +L ++ +M       VP+  T ++++H    + E     
Sbjct: 184 PDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKAL 243

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +     KPN  T+ ++I+   + +    A  L + + +  + P A  YN+++AGY
Sbjct: 244 EVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGY 303

Query: 127 FRKKDVQGALMVLKEMEQ-ANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQIT 182
            ++  +  A  + +EM   A ++P   TF+ LI        + +  E   ++ + G    
Sbjct: 304 CKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAAD 363

Query: 183 KYVFMALINAYTTCGEFEKARQV---------VLDAEIPVKSRSEVKSALVSALASHGRT 233
              +  LI   +   + ++A +V         +LD   PV   S      V  L   G  
Sbjct: 364 TCTYRILIAGLSRATKLDEALEVYKQMREKKFLLD---PVSCVS-----FVGGLCKTGNI 415

Query: 234 SDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPD 282
             A  V+E  +++G    P     L E L   G +    +L+E     D
Sbjct: 416 DQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLMEPAKARD 464


>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
 gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
          Length = 571

 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 133/297 (44%), Gaps = 12/297 (4%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY-PMICHHNLKPNSETFR 85
           V  A+ +  Q+   +  P+ +  NS++       ++  V  +Y  M    +  P++ T+ 
Sbjct: 175 VSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSTEGHCFPDTMTYS 234

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           ++IS   K+   DSA  LL+++K+  + PT  +Y  ++A +F+  DV GAL + +EM   
Sbjct: 235 ALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEMRHQ 294

Query: 146 NVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
             +PD  T++ LI        I     ++ +++  G +    V   +IN     G  + A
Sbjct: 295 YCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLDDA 354

Query: 203 RQVVLDAEI--PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE 260
            ++  +      + S     + + +   S  R S+    +E +KE+G +        LI+
Sbjct: 355 MKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILID 414

Query: 261 HLNSEGELNRLIQLLEEVHDPDYWMDGC----CRLILHCVRFKQLSSATDLLKQLKD 313
                  + + + LLEE+ +  +    C    C LI    + K+   A +L ++LK+
Sbjct: 415 GFCKTNRMEKAMMLLEEMDEKGF--PPCPAAYCSLIDALGKAKRYDLACELFQELKE 469



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/279 (21%), Positives = 116/279 (41%), Gaps = 5/279 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P++  Y  L+     L  VH AL + E+M      P   T   ++    ++   +   
Sbjct: 261 MQPTTKIYTMLVALFFKLNDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAY 320

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
             +  +     +P++    +MI+   K    D A  L  ++  +  +P+   YN I+   
Sbjct: 321 HFFYEMQREGCRPDTIVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKAL 380

Query: 127 FRKKDVQGAL-MVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQIT 182
           F  K     +    + M+++ + P S T+S LI   C     E  +   E++   G    
Sbjct: 381 FESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPC 440

Query: 183 KYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
              + +LI+A      ++ A ++  +  E    S S V + ++  L   GR  DAI +++
Sbjct: 441 PAAYCSLIDALGKAKRYDLACELFQELKENCGSSSSRVYAVMIKHLGKAGRLDDAINMFD 500

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           E+ + GC  +  A  AL+  L   G L+  +  +  + +
Sbjct: 501 EMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQE 539



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 79/162 (48%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I+PSS +Y  LI   C   ++  A+ ++E+M +    P      S++ A  ++  ++L  
Sbjct: 402 ISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLAC 461

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +  +    +S  +  MI    K    D A ++ D++ ++   P    YNA+M+G 
Sbjct: 462 ELFQELKENCGSSSSRVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGL 521

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII 168
            R   +  AL  ++ M++    PD  +++ +++    +ED+I
Sbjct: 522 ARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLQKQEDLI 563


>gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 642

 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 92/411 (22%), Positives = 174/411 (42%), Gaps = 28/411 (6%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHH-NLKPNSETFR 85
           V  AL V  Q    +  P++ T NS++    +  +   V  +Y  +C+  +  P++ T+ 
Sbjct: 178 VSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYS 237

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           ++IS   K+   DSA  L D++K+  + PT  +Y  ++  YF+   V+ AL + +EM++A
Sbjct: 238 ALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRA 297

Query: 146 NVKPDSQTFSYLIHNCSNEEDIIKYYEQLKS--AGGQITKYVFM-ALINAYTTCGEFEKA 202
              P   T++ LI        + + Y+  K+    G     VF+  L+N     G  E+ 
Sbjct: 298 GCSPTVYTYTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLNNLMNILGKVGRLEEL 357

Query: 203 RQVVLDAEI-----PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIA 257
             V  +         V S + V  AL     S    S+    ++++K  G +        
Sbjct: 358 TNVFNEMGTWRCTPTVVSYNTVIKAL---FESKAPVSEVSSWFDKMKADGVSPSEFTYSI 414

Query: 258 LIEHLNSEGELNRLIQLLEEVHDPDY--WMDGCCRLILHCVRFKQLSSATDLLKQLKDKF 315
           LI+       + + + LLEE+ +  +       C LI    + K+  +A +L K+LK+ F
Sbjct: 415 LIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENF 474

Query: 316 KDDE----MAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGAC 371
            +        M  HF +            +   +DL   +K++ G  P     + L+   
Sbjct: 475 GNVSSRVYAVMIKHFGKC---------GKLSEAVDLFNEMKNQ-GSGPDVYAYNALMSGM 524

Query: 372 VNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           V A  +  A+ + ++ E  G   ++ S+  +   F  +G  + A ++   M
Sbjct: 525 VKAGMVNEANSLLRKMEENGCTADINSHNIILNGFARTGVPRRAIEMFETM 575



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/400 (19%), Positives = 165/400 (41%), Gaps = 48/400 (12%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+   Y  L+     + KV  ALD+ E+M +    P+  T   ++    ++       
Sbjct: 264 MQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVEEAY 323

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +Y  +    L P+     +++++  K+   +   ++ +++      PT   YN ++   
Sbjct: 324 DLYKNMLTDGLTPDVVFLNNLMNILGKVGRLEELTNVFNEMGTWRCTPTVVSYNTVIKAL 383

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVF 186
           F  K                  P S+  S              +++++K+ G   +++ +
Sbjct: 384 FESK-----------------APVSEVSS--------------WFDKMKADGVSPSEFTY 412

Query: 187 MALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSA---LVSALASHGRTSDAIIVYEEI 243
             LI+ Y      EKA  ++L  E+  K      +A   L++AL    R   A  +++E+
Sbjct: 413 SILIDGYCKTNRVEKA--LLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKEL 470

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYWMDGCCRLILHCVRFK 299
           KE   N+  R    +I+H    G+L+  + L  E+ +    PD +      L+   V+  
Sbjct: 471 KENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNA--LMSGMVKAG 528

Query: 300 QLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPP 359
            ++ A  LL+++++     ++      + I    A T  P  +  +++ + +K   G+ P
Sbjct: 529 MVNEANSLLRKMEENGCTADIN---SHNIILNGFARTGVP--RRAIEMFETMK-HCGIKP 582

Query: 360 SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSY 399
                + LLG   +A   + A  + +E ++ G  Y+ ++Y
Sbjct: 583 DGVTYNTLLGCFAHAGMFEEAARLMREMKDKGFEYDAITY 622


>gi|242086791|ref|XP_002439228.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
 gi|241944513|gb|EES17658.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
          Length = 653

 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 118/278 (42%), Gaps = 8/278 (2%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P +ASY  +I   C   ++     VV  MV   L P+  T  +I++A  ++ E  +   I
Sbjct: 232 PVAASYNAVILALCREFRMQEVFAVVGDMVGRGLQPNVITYTTIVNAFCKAGELRMACAI 291

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +      PN  TF +++           A  +   +      P+   YN ++ G   
Sbjct: 292 LARMVITGCTPNVATFTALVGGLFNDGRVHDALDMWKCMVAEGWAPSTVSYNVLIRGLCS 351

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYV 185
             D++GA  VL +MEQ    P+++T+S LI   S   D+   I  +  +  +G +    V
Sbjct: 352 VGDLKGASSVLNDMEQHGCFPNARTYSTLIDGFSKAGDLDGAISIWNDMTRSGCKPNVVV 411

Query: 186 FMALINAYTTCGEFEKARQVV---LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           +  ++  +     F +A  ++   L    P  + +   + L+ +L +  R   A+ V+ E
Sbjct: 412 YTNMVGVFCKKLMFNQAESLIDKMLVENCPPNTVT--FNTLIRSLCNCRRVGRALGVFHE 469

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           ++  GC    R    L+  L  EG     +Q++ E+ +
Sbjct: 470 MRRHGCPPNGRTYNELLHGLFREGNCGDALQMVIEMQN 507



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 85/187 (45%), Gaps = 3/187 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           PS+ SY  LI   C +  +  A  V+  M Q    P+  T ++++    ++ + +    I
Sbjct: 337 PSTVSYNVLIRGLCSVGDLKGASSVLNDMEQHGCFPNARTYSTLIDGFSKAGDLDGAISI 396

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +     KPN   + +M+ +  K   F+ A SL+D +   N  P    +N ++     
Sbjct: 397 WNDMTRSGCKPNVVVYTNMVGVFCKKLMFNQAESLIDKMLVENCPPNTVTFNTLIRSLCN 456

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKYV 185
            + V  AL V  EM +    P+ +T++ L+H      N  D ++   ++++ G +++   
Sbjct: 457 CRRVGRALGVFHEMRRHGCPPNGRTYNELLHGLFREGNCGDALQMVIEMQNHGIELSLVT 516

Query: 186 FMALINA 192
           +  +++ 
Sbjct: 517 YNTVVSG 523



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 75/402 (18%), Positives = 147/402 (36%), Gaps = 57/402 (14%)

Query: 29  VALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
           VAL V   M +  + P+  T N ++ A  +++     R++   +      P+  T+ +++
Sbjct: 153 VAL-VCGNMRKDGVQPNVFTYNLLVRALCQNHRVGAARKMLDEMATKGCPPDDVTYGTIV 211

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
           S    +   D A  +L         P A+ YNA++    R+  +Q    V+ +M    ++
Sbjct: 212 SALCTLGRVDEATEVLSAAP-----PVAASYNAVILALCREFRMQEVFAVVGDMVGRGLQ 266

Query: 149 PDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
           P+  T++                                 ++NA+   GE   A  ++  
Sbjct: 267 PNVITYT--------------------------------TIVNAFCKAGELRMACAILAR 294

Query: 209 AEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
             I          +ALV  L + GR  DA+ +++ +   G      +   LI  L S G+
Sbjct: 295 MVITGCTPNVATFTALVGGLFNDGRVHDALDMWKCMVAEGWAPSTVSYNVLIRGLCSVGD 354

Query: 268 LNRLIQLLEEVHDPDYWMDGC-------CRLILHCVRFKQLSSATDLLKQLKDKFKDDEM 320
           L     +L ++        GC         LI    +   L  A  +   +        +
Sbjct: 355 LKGASSVLNDMEQ-----HGCFPNARTYSTLIDGFSKAGDLDGAISIWNDMTRSGCKPNV 409

Query: 321 AMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRA 380
            +  +   +FC+    +  +  I   L++        PP+    + L+ +  N R + RA
Sbjct: 410 VVYTNMVGVFCKKLMFNQAESLIDKMLVE------NCPPNTVTFNTLIRSLCNCRRVGRA 463

Query: 381 HLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
             ++ E    G P N  +Y  +       GN   A +++ +M
Sbjct: 464 LGVFHEMRRHGCPPNGRTYNELLHGLFREGNCGDALQMVIEM 505



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/159 (16%), Positives = 71/159 (44%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+   Y  ++   C  L  + A  ++++M+     P+T T N+++ +            +
Sbjct: 407 PNVVVYTNMVGVFCKKLMFNQAESLIDKMLVENCPPNTVTFNTLIRSLCNCRRVGRALGV 466

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +  H   PN  T+  ++    +  +   A  ++ +++   +  +   YN +++G  +
Sbjct: 467 FHEMRRHGCPPNGRTYNELLHGLFREGNCGDALQMVIEMQNHGIELSLVTYNTVVSGLCQ 526

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI 167
            +  + A+  +  M    ++PD+ TF+ +IH    E ++
Sbjct: 527 MRMGREAMFFVGRMIVRGIQPDAFTFTAIIHAYCKEGEV 565


>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 87/428 (20%), Positives = 184/428 (42%), Gaps = 24/428 (5%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
            +P   +Y  L+       +   A++V+++M      PS  T NS++ A       +   
Sbjct: 322 FSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAM 381

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +    +KP+  T+ +++S   K    D A  + ++++     P    +NA++  +
Sbjct: 382 ELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMH 441

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITK 183
             + +    + V +E++     PD  T++ L+        + ++   ++++K AG    +
Sbjct: 442 GNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPER 501

Query: 184 YVFMALINAYTTCGEFEKARQV---VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
             F  LI+AY+ CG F++A  +   +LDA   V       +A+++ALA  G    +  V 
Sbjct: 502 DTFNTLISAYSRCGFFDQAMAIYRRMLDA--GVTPDLSTYNAVLAALARGGLWEQSEKVL 559

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDYWMDGCCRLILHCV 296
            E+K+  C        +L+    +  E+ R+  L EE++    +P   +     L+    
Sbjct: 560 AEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVY--- 616

Query: 297 RFKQLSSATDLLKQLKDKFKD-DEMAMEYHFSEIFCQIATTDPPD-VQIGLDLLQFIKDE 354
                 S +DLL + +  F +  E       + +   ++       V    ++L FIKD 
Sbjct: 617 ------SKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDS 670

Query: 355 LGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKS 414
            G  PS    + L+         +++  I +E    G+  +++S+  +  A+  +G  K 
Sbjct: 671 -GFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKE 729

Query: 415 ASKLLSKM 422
           AS++ ++M
Sbjct: 730 ASRIFAEM 737



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/243 (20%), Positives = 111/243 (45%), Gaps = 13/243 (5%)

Query: 17  LITYSCDLLKVHVALD--------VVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           LITY+  +L V+  +         +V+ M    + P   T N+++ +C     +     +
Sbjct: 255 LITYNV-ILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEV 313

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +      P+  T+ +++ +  K +    A  +L +++     P+   YN++++ Y R
Sbjct: 314 FEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYAR 373

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYV 185
              +  A+ +  +M +  +KPD  T++ L+        ++  +K +E+++ AG Q     
Sbjct: 374 DGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICT 433

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIK 244
           F ALI  +   G F +  +V  + +I       V  + L++    +G  S+   V++E+K
Sbjct: 434 FNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMK 493

Query: 245 EAG 247
            AG
Sbjct: 494 RAG 496



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 79/398 (19%), Positives = 142/398 (35%), Gaps = 114/398 (28%)

Query: 100 AYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQ--------------- 144
           A SLL DL+   +      Y +++  Y      + A+MV K++E+               
Sbjct: 204 AASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILN 263

Query: 145 ---------------------ANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQ 180
                                + V PD  T++ LI +C   S  E+  + +E++K+AG  
Sbjct: 264 VYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFS 323

Query: 181 ITKYVFMALINAYT----------TCGEFEK-----------------ARQVVLDAEIPV 213
             K  + AL++ Y              E E                  AR  +LD  + +
Sbjct: 324 PDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMEL 383

Query: 214 KSRSEVK---------SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
           KS+   K         + L+S     G+   A+ V+EE++ AGC        ALI+   +
Sbjct: 384 KSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGN 443

Query: 265 EGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEY 324
            G    ++++ EE+             I  CV    + +   LL        D E+    
Sbjct: 444 RGNFVEMMKVFEEIK------------ICECV--PDIVTWNTLLAVFGQNGMDSEV---- 485

Query: 325 HFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIW 384
             S +F ++                      G  P R   + L+ A        +A  I+
Sbjct: 486 --SGVFKEMKRA-------------------GFVPERDTFNTLISAYSRCGFFDQAMAIY 524

Query: 385 KEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           +   +AG+  ++ +Y  +  A    G  + + K+L++M
Sbjct: 525 RRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEM 562



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 38/201 (18%), Positives = 88/201 (43%), Gaps = 3/201 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  L+    +  +V     + E++  G + P    + +++    +S       R 
Sbjct: 569 PNELTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERA 628

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +      P+  T  +M+S+  + +       +L+ +K+    P+ + YN++M  Y R
Sbjct: 629 FLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSR 688

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYV 185
            +  + +  +L+E+    +KPD  +F+ +I   C N   ++  + + ++K  G       
Sbjct: 689 TEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVIT 748

Query: 186 FMALINAYTTCGEFEKARQVV 206
           +   I +Y +   F +A  VV
Sbjct: 749 YNTFIASYASDSMFIEAIDVV 769



 Score = 43.1 bits (100), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 50/117 (42%)

Query: 42  LVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAY 101
             PS  T NS+++    +  F     I   I    +KP+  +F ++I    +      A 
Sbjct: 672 FTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEAS 731

Query: 102 SLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            +  ++K+  L P    YN  +A Y        A+ V+K M +   KP+  T++ LI
Sbjct: 732 RIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNECKPNQNTYNSLI 788



 Score = 39.7 bits (91), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 34/171 (19%), Positives = 71/171 (41%), Gaps = 8/171 (4%)

Query: 7   ITPSSASYKKLI-TYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           I P +   K L+  YS   L        +E   QG   P   T+N+++         +  
Sbjct: 602 IEPQAVLLKTLVLVYSKSDLLTETERAFLELREQG-FSPDITTLNAMVSIYGRRRMVSKT 660

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             I   I      P+  T+ S++ +  + + F+ +  +L ++    + P    +N ++  
Sbjct: 661 NEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFA 720

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE------DIIKY 170
           Y R   ++ A  +  EM+   + PD  T++  I + +++       D++KY
Sbjct: 721 YCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKY 771


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 120/254 (47%), Gaps = 6/254 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P   +Y  LI   C L  V  A D+V +M +  + PS ET N+++ A   + +     
Sbjct: 400 IRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCF 459

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +    +K +  +F S++    K      A ++LDD+   ++ P A +YN+I+  Y
Sbjct: 460 TVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAY 519

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITK 183
               D + A +++++M+ + V     T++ L+        I +  E    L++ G +   
Sbjct: 520 IESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDV 579

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             +  +I+A    G+ +KA +++ +  +  ++        LVSALAS GR  D   +Y++
Sbjct: 580 VSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQ 639

Query: 243 IKEAGCNLEPRAVI 256
           +     N+EP + I
Sbjct: 640 MLHK--NVEPSSSI 651



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 90/468 (19%), Positives = 197/468 (42%), Gaps = 65/468 (13%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           + + P+  +Y  +I        +     + +QM+     P+  T N +L     +   + 
Sbjct: 223 MGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDE 282

Query: 65  VRRIYPMICHHNLKPNSETF-------------RSMISL--------------------N 91
            R +   +  H++ P+  T+             R+M+SL                    N
Sbjct: 283 TRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLN 342

Query: 92  VKIKDFDSAYS--LLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              KD   A +  +L+ L    L+PT  +YN ++ GY + +D++GA  + ++M+  +++P
Sbjct: 343 GLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRP 402

Query: 150 DSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D  T++ LI+     E + K  +   +++ +G   +   F  LI+AY T G+ EK   V+
Sbjct: 403 DHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVL 462

Query: 207 LD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLN 263
            D  +  +KS      ++V A   +G+  +A+ + +++     ++ P A +  ++I+   
Sbjct: 463 SDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYK--DVAPNAQVYNSIIDAYI 520

Query: 264 SEGELNRLIQLLEEVHDP---------DYWMDGCCRLILHCVRFKQLSSATDLLKQLKDK 314
             G+  +   L+E++ +          +  + G C       R  Q+  A +L+  L+++
Sbjct: 521 ESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLC-------RSSQIDEAEELIYTLRNQ 573

Query: 315 FKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNA 374
               ++          C    TD       L+LLQ + ++ G+ P+ +    L+ A  +A
Sbjct: 574 GLRPDVVSYNTIISACCNKGDTDK-----ALELLQEM-NKYGIRPTLRTYHTLVSALASA 627

Query: 375 RDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
             +     ++++  +  +  +   Y  M  A++   N    + L  +M
Sbjct: 628 GRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEM 675



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 79/419 (18%), Positives = 175/419 (41%), Gaps = 14/419 (3%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETI--NSILHACEESYEFNLVR 66
           P + ++ K++        + VAL +V +M + E  P  +    N ++     S + +   
Sbjct: 155 PDTFAWNKVVQACVAAGDLDVALAMVRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDAL 214

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++  +    + PN  T+ +MI  +VK  D ++ + L D +      P    YN +++G 
Sbjct: 215 KVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGL 274

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKYYEQLKSAGGQITK 183
            R   +    +++ EM   ++ PD  T+S L    +   +   ++  + +    G  +  
Sbjct: 275 CRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGA 334

Query: 184 YVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           Y    L+N     G+  KA QV+ +     +   + + + L++          A  ++E+
Sbjct: 335 YTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQ 394

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDP--DYWMDGCCRLILHCVRFKQ 300
           +K      +     ALI  L     + +   L+ E+     D  ++    LI       Q
Sbjct: 395 MKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQ 454

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS 360
           L     +L  ++ K    ++       + FC+     P  V I  D++   KD   + P+
Sbjct: 455 LEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKI-PEAVAILDDMI--YKD---VAPN 508

Query: 361 RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLL 419
            +  + ++ A + + D ++A L+ ++ +N+G+  ++++Y  + K    S     A +L+
Sbjct: 509 AQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELI 567



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 95/464 (20%), Positives = 185/464 (39%), Gaps = 22/464 (4%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P + SY  +I       K   AL V ++MV   +VP+  T N+++    +  +     R+
Sbjct: 192 PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRL 251

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              + H   KPN  T+  ++S   +    D    L+D++   ++ P    Y+ +  G  R
Sbjct: 252 RDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTR 311

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYV 185
             + +  L +  E  +  V   + T S L++    +  + K     E L   G   T  +
Sbjct: 312 TGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVI 371

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +  LIN Y    +   A  +    +   ++      +AL++ L      + A  +  E++
Sbjct: 372 YNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEME 431

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD--GCCRLILHCVRFKQLS 302
           ++G +        LI+   + G+L +   +L ++       D      ++    +  ++ 
Sbjct: 432 KSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIP 491

Query: 303 SATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRK 362
            A  +L  +   +KD     + + S I   I +    D +    L++ +K+  G+  S  
Sbjct: 492 EAVAILDDM--IYKDVAPNAQVYNSIIDAYIESG---DTEQAFLLVEKMKNS-GVSASIV 545

Query: 363 CLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
             + LL     +  +  A  +     N GL  +V+SY  +  A    G+   A +LL +M
Sbjct: 546 TYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEM 605

Query: 423 PKDDPHVRFVIQACKQTY-TIPSLQKERGFEKDRDTL---LLHK 462
            K      + I+   +TY T+ S     G   D + L   +LHK
Sbjct: 606 NK------YGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHK 643



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/176 (18%), Positives = 74/176 (42%), Gaps = 3/176 (1%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++ P++  Y  +I    +      A  +VE+M    +  S  T N +L     S + +  
Sbjct: 504 DVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEA 563

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +   + +  L+P+  ++ ++IS      D D A  LL ++ +  + PT   Y+ +++ 
Sbjct: 564 EELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSA 623

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAG 178
                 V     + ++M   NV+P S  +  ++     C N+  +    +++   G
Sbjct: 624 LASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKG 679



 Score = 38.5 bits (88), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 21/106 (19%), Positives = 53/106 (50%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   SY  +I+  C+      AL+++++M +  + P+  T ++++ A   +   + + 
Sbjct: 575 LRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDME 634

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNL 112
            +Y  + H N++P+S  +  M+   V+ ++     SL  ++ E  +
Sbjct: 635 CLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGI 680


>gi|255577477|ref|XP_002529617.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530902|gb|EEF32762.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 438

 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 10/205 (4%)

Query: 45  STETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLL 104
           +T T+  +L AC     F   R+I+  I       N     S++SL  K ++   A  + 
Sbjct: 231 NTFTMAFVLKACASIMAFEEGRQIHARILRSGFSLNPYVQSSLVSLYGKCEEIRLAKQVF 290

Query: 105 DDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC--S 162
           D++ E NL+     ++A+++GY R   V  AL + +EM++  ++PD  +   +I  C  +
Sbjct: 291 DEITERNLV----CWSAMISGYARVGMVNEALSMFREMQEVGIEPDEVSLVGVISACAMA 346

Query: 163 NEEDIIKY-YEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS 221
              DI ++ +  +K     I   +  AL+N Y  CG  EKA+++     +PVK  S+  S
Sbjct: 347 GALDIGRWIHAYIKKRMIHIDLELNTALVNMYAKCGCIEKAKEIF--DYMPVKD-SKAWS 403

Query: 222 ALVSALASHGRTSDAIIVYEEIKEA 246
           +++  LA HG   DA+ ++  ++EA
Sbjct: 404 SMIVGLAIHGLAEDALEMFSRMEEA 428


>gi|19071826|dbj|BAB85657.1| PnC401 homologue [Arabidopsis thaliana]
          Length = 831

 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 110/242 (45%), Gaps = 5/242 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEE-SYEFNLV 65
           + P+  +   L+   C+  K+  A ++V +M    + P   T N++  A           
Sbjct: 456 LQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAE 515

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             I P + H+ +KPN  T  ++++   +    + A      +KE+ + P   ++N+++ G
Sbjct: 516 DMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKG 575

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQIT 182
           +    D+ G   V+  ME+  VKPD  TFS L++  S+  D+ +    Y  +   G    
Sbjct: 576 FLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPD 635

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
            + F  L   Y   GE EKA+Q++    +  V+    + + ++S   S G    A+ VY+
Sbjct: 636 IHAFSILAKGYARAGEPEKAKQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYK 695

Query: 242 EI 243
           ++
Sbjct: 696 KM 697



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 128/312 (41%), Gaps = 41/312 (13%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           PS  +Y  L+T        H  L ++ ++ +  L P T   N+I++A  ES   +   +I
Sbjct: 352 PSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKI 411

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLD-DLKEMNLMPTASMYNAIMAGYF 127
           +  +     KP + TF ++I    KI   + +  LLD  L++  L P     N ++  + 
Sbjct: 412 FEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWC 471

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIH-------NCSNEEDII------------ 168
            ++ ++ A  ++ +M+   VKPD  TF+ L          C+ E+ II            
Sbjct: 472 NQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNV 531

Query: 169 --------------------KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV-L 207
                               +++ ++K  G     +VF +LI  +    + +   +VV L
Sbjct: 532 RTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDL 591

Query: 208 DAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
             E  VK      S L++A +S G       +Y ++ E G + +  A   L +     GE
Sbjct: 592 MEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGE 651

Query: 268 LNRLIQLLEEVH 279
             +  Q+L ++ 
Sbjct: 652 PEKAKQILNQMR 663



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 63/338 (18%), Positives = 146/338 (43%), Gaps = 24/338 (7%)

Query: 100 AYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159
           A+S+ + L E    P+   Y  ++    R+K     L ++ ++E+  +KPD+  F+ +I+
Sbjct: 338 AHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIIN 397

Query: 160 NCS---NEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV---LDAEIPV 213
             S   N +  +K +E++K +G + T   F  LI  Y   G+ E++ +++   L  E+ +
Sbjct: 398 ASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEM-L 456

Query: 214 KSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC-------NLEPRAVIALIEHLNSEG 266
           +      + LV A  +  +  +A  +  +++  G        N   +A   +     +E 
Sbjct: 457 QPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAED 516

Query: 267 ELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHF 326
            +  + ++L     P+  +  C  ++       ++  A     ++K+      + +    
Sbjct: 517 MI--IPRMLHNKVKPN--VRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSL 572

Query: 327 SEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKE 386
            + F  I   D      G+  +  + +E G+ P       L+ A  +  D+KR   I+ +
Sbjct: 573 IKGFLNINDMD------GVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTD 626

Query: 387 YENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424
               G+  ++ ++  + K +  +G  + A ++L++M K
Sbjct: 627 MLEGGIDPDIHAFSILAKGYARAGEPEKAKQILNQMRK 664



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 74/400 (18%), Positives = 151/400 (37%), Gaps = 88/400 (22%)

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           I+  +     KP+  T+ ++++   + K F S  SL+  +++  L P   ++NAI+    
Sbjct: 341 IFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASS 400

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLI----------------------------- 158
              ++  A+ + ++M+++  KP + TF+ LI                             
Sbjct: 401 ESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPND 460

Query: 159 HNCS-------NEEDIIKYYE---QLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
             C+       N+  I + +    +++S G +     F  L  AY   G    A  +++ 
Sbjct: 461 RTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIP 520

Query: 209 AEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE---HLN 263
             +  K +  V++   +V+     G+  +A+  +  +KE G +       +LI+   ++N
Sbjct: 521 RMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNIN 580

Query: 264 SEGELNRLIQLLEEVH-DPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAM 322
               +  ++ L+EE    PD             V F  L +A   +  +K          
Sbjct: 581 DMDGVGEVVDLMEEFGVKPD------------VVTFSTLMNAWSSVGDMKR--------- 619

Query: 323 EYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHL 382
                   C+         +I  D+L     E G+ P       L      A + ++A  
Sbjct: 620 --------CE---------EIYTDML-----EGGIDPDIHAFSILAKGYARAGEPEKAKQ 657

Query: 383 IWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           I  +    G+  NV+ Y  +   + ++G  K A ++  KM
Sbjct: 658 ILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKM 697



 Score = 45.1 bits (105), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 30/161 (18%), Positives = 72/161 (44%), Gaps = 1/161 (0%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++ P+  +   ++   C+  K+  AL    +M +  + P+    NS++       + + V
Sbjct: 526 KVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGV 585

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +  ++    +KP+  TF ++++    + D      +  D+ E  + P    ++ +  G
Sbjct: 586 GEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKG 645

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE 165
           Y R  + + A  +L +M +  V+P+   ++ +I   CS  E
Sbjct: 646 YARAGEPEKAKQILNQMRKFGVRPNVVIYTQIISGWCSAGE 686


>gi|125548468|gb|EAY94290.1| hypothetical protein OsI_16061 [Oryza sativa Indica Group]
          Length = 586

 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 127/283 (44%), Gaps = 18/283 (6%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-C---EESYEFN 63
           +P   S+  +I   C + +V  AL++VE+M +    P T T N I+   C   E S    
Sbjct: 251 SPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHE 310

Query: 64  LVRRIY-PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           ++RR+    +C     PN  TF S+IS   K    + A ++ +D+    +MP    YN +
Sbjct: 311 VLRRLQRDGVC----MPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVL 366

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGG 179
           + GY +  D+  A+ V ++M +    PD  TFS LI     C   +D ++ +  +     
Sbjct: 367 INGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRI 426

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVK----SRSEVKSALVSALASHGRTSD 235
           Q   Y F  +I  ++ C +      + L  E+ ++     ++ + + ++  L   G+  +
Sbjct: 427 QPNVYTFSIII--HSLCKQNRSDEAICLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDE 484

Query: 236 AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           A ++ + ++E GC  +      LI     +  ++  I    E+
Sbjct: 485 ANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEM 527



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 54/270 (20%), Positives = 118/270 (43%), Gaps = 6/270 (2%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQ-GELVPSTETINSILHACEESYEFNLVR 66
           +P + ++  ++   C   +V    +V+ ++ + G  +P+  T  S++    ++ +     
Sbjct: 286 SPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAM 345

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +Y  +    + PN+ T+  +I+   K+ D  SA  +   +  +   P    +++++ GY
Sbjct: 346 AVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGY 405

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS----NEEDIIKYYEQLKSAGGQIT 182
            R   +  AL +  +M Q  ++P+  TFS +IH+      ++E I    E          
Sbjct: 406 CRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAICLLNELNLRPDIAPQ 465

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
            +++  +I+    CG+ ++A  +     E   +      + L+       R S+AI+ + 
Sbjct: 466 AFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFH 525

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRL 271
           E+ EAGC+ +   V   I  L   G  N +
Sbjct: 526 EMVEAGCSPDSITVNCFISCLLKAGMPNEV 555



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 84/462 (18%), Positives = 182/462 (39%), Gaps = 36/462 (7%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQG-ELVPSTETINSILHACEESYE 61
           + L ITPS+ S +++I   C   +   AL + +QM       P    ++ ++ +C  +  
Sbjct: 139 SPLSITPSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANL 198

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDD-LKEMNLMPTASMYN 120
            +    +         +  +  +  ++S  +         +L +  +++    P    +N
Sbjct: 199 LDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFN 258

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSA 177
            ++ G  R   VQ AL +++ M +    PD+ T + ++       ++ + +E   +L+  
Sbjct: 259 VVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRD 318

Query: 178 GGQITKYV-FMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSD 235
           G  +   V F ++I+ Y   G+ E A  V  D     +   +   + L++     G    
Sbjct: 319 GVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGS 378

Query: 236 AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDYWMDGCCRL 291
           A+ VY+++    C  +     +LI+     G+L+  +++  ++      P+ +      +
Sbjct: 379 AVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFS---I 435

Query: 292 ILHCVRFKQLSS-ATDLLKQLKDKFKDDEMAMEYH-FSEIFCQIATTDPPDVQIGLDLLQ 349
           I+H +  +  S  A  LL +L  +      A  Y+   ++ C+    D        +L++
Sbjct: 436 IIHSLCKQNRSDEAICLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEA------NLIR 489

Query: 350 FIKDELGLPPSRKCLDFL-LGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLA 408
              +E G  P +     L +G C+ +R +  A + + E   AG   + ++        L 
Sbjct: 490 KGMEEKGCRPDKYTYTILIIGYCMKSR-ISEAIMFFHEMVEAGCSPDSITVNCFISCLLK 548

Query: 409 SGNRKSASKLLSKMPKDDPHV-RFVIQACKQTYTIPSLQKER 449
           +G           MP +  HV R            PS  ++R
Sbjct: 549 AG-----------MPNEVDHVMRLASGGASSIQEFPSPVRQR 579


>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 609

 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 107/215 (49%), Gaps = 10/215 (4%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P   ++ S+L AC E  +  L R +   +    +K NS    ++IS+  K  +  S+  +
Sbjct: 217 PDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRI 276

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163
            D +   + +     +NA ++ Y +      A+ +   M++  V P+  T + ++  C++
Sbjct: 277 FDGMPSRDFIT----WNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACAS 332

Query: 164 --EEDIIKYYEQLKSAGG-QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK 220
               D+ K  ++  +  G Q   +V  ALI+ Y  CG  E A++V  D  +P K+ +   
Sbjct: 333 IGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFND--MPRKNDASW- 389

Query: 221 SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255
           +A++SALASHG+  +A+ ++E + + G +  P  +
Sbjct: 390 NAMISALASHGKAKEALSLFERMSDEGGSARPNDI 424



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 93/444 (20%), Positives = 184/444 (41%), Gaps = 27/444 (6%)

Query: 7   ITPSSASYKKLITYSCDLLKVH---VALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           ITP    Y   I         H   + L +  QM    + P+  T   +  AC    E  
Sbjct: 75  ITPHPNDYAFNIMLRATTTTWHDYPLTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIR 134

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
           + R  +  +    L  +  T  SM+++  +  +   A  + D++ E +L+     +N+++
Sbjct: 135 MARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVS----WNSLL 190

Query: 124 AGYFRKKDVQGALMVLKEM-EQANVKPDSQTFSYLIHNCSNEED--IIKYYEQ-LKSAGG 179
           +GY +    + A+ V   + E++  +PD  +   ++  C    D  + ++ E  +   G 
Sbjct: 191 SGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGM 250

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAII 238
           ++  Y+  ALI+ Y+ CGE   +R+ + D    + SR  +  +A +SA A +G   +AI 
Sbjct: 251 KVNSYIGSALISMYSKCGELVSSRR-IFDG---MPSRDFITWNAAISAYAQNGMADEAIS 306

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRF 298
           ++  +KE G +     + A++    S G L+   Q+ E         D     I      
Sbjct: 307 LFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHD-----IFVATAL 361

Query: 299 KQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLP 358
             + +    L+  +  F D     +  ++ +   +A+      +  L L + + DE G  
Sbjct: 362 IDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGK--AKEALSLFERMSDEGGSA 419

Query: 359 -PSRKCLDFLLGACVNARDLKRAHLIWKEYENA-GLPYNVLSYLWMYKAFLASGNRKSAS 416
            P+      LL ACV+A  +   + ++       GL   +  Y  M      +G+   A 
Sbjct: 420 RPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAW 479

Query: 417 KLLSKMPK--DDPHVRFVIQACKQ 438
            ++ KMP+  D+  +  +  AC++
Sbjct: 480 DVIEKMPEKPDNVTLGALHSACQR 503


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/295 (21%), Positives = 127/295 (43%), Gaps = 10/295 (3%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++ P   +Y  LI   C   K   A +++ +MV   + P T T NSI+    ++ +F   
Sbjct: 5   KVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERA 64

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +  ++   N +P+  T+ ++IS   K ++ D A +L+D+      +P    Y+ +  G
Sbjct: 65  HSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADG 124

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK---SAGGQIT 182
             ++  +  A  ++KEM      P+  T++ LI          K YE L+   S+G    
Sbjct: 125 LCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPD 184

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYE 241
              +  +++     G  +KA ++V        + S +  +AL+  L   GR  +A  +++
Sbjct: 185 VVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFK 244

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY------WMDGCCR 290
           E+    C  +  A ++L+             ++++ +    Y       MDG C+
Sbjct: 245 EMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCK 299



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 110/256 (42%), Gaps = 8/256 (3%)

Query: 37  MVQGELVPSTETINSILHA-CEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIK 95
           M + ++ P   T N ++   C+ S        ++ M+    + P++ TF S++    K  
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMV-DRGVTPDTVTFNSIMDGLCKAG 59

Query: 96  DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFS 155
            F+ A+SLL  + E N  P+   YN +++G  ++++V  A  ++ E   +   PD  T+S
Sbjct: 60  KFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYS 119

Query: 156 YLIHNCSNEEDIIKYYEQLKSAGGQITK---YVFMALINAYTTCGEFEKARQVVLDAEIP 212
            L         I + +E +K   G         +  LI+      + EKA + +L+  + 
Sbjct: 120 ILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYE-LLETLVS 178

Query: 213 VKSRSEVK--SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNR 270
                +V   + +V  L   GR   A+ + E + + GC        AL+E L   G ++ 
Sbjct: 179 SGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDE 238

Query: 271 LIQLLEEVHDPDYWMD 286
              + +E+   D   D
Sbjct: 239 AHHIFKEMVSKDCTAD 254



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 84/432 (19%), Positives = 170/432 (39%), Gaps = 20/432 (4%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNL 64
           + T  + +Y  L+   C   +   A  VV+  ++G   P  +  N+++   C+E    + 
Sbjct: 250 DCTADALAYVSLVNGYCKSSRTKEAQKVVDG-IRG--TPYIDVYNALMDGYCKEG-RLDE 305

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
           +  ++  +      PN +T+  ++    K    D A+  L+ +     +P    YN I+ 
Sbjct: 306 IPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIID 365

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQI 181
           G F+    + A  VL +M QA + PD+ T++ L+     EE   D +   + +  AG   
Sbjct: 366 GLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDP 425

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDA--EIPVKSRSEVKSALVSALASHGRTSDAIIV 239
               +  LI+  +       A +++ +      V S     + ++  L   G    A+++
Sbjct: 426 DNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLL 485

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC--CRLILHCVR 297
            + +   G           I+ L  EG L+    LL E+   D   D      +I+   +
Sbjct: 486 MDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEM---DTLRDEVSYTTVIIGLCK 542

Query: 298 FKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGL 357
            +QL  A+ L +++        + +  H   +    A T    +   L LL+ +  + G 
Sbjct: 543 AEQLDRASKLAREM---VAVKGLCITSHTFNLLID-AFTKTKRLDEALTLLELMV-QRGC 597

Query: 358 PPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASK 417
            PS    + ++        + +A  ++ E    G+  + +SY  +       G  K A +
Sbjct: 598 SPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQ 657

Query: 418 LLSKMPKDDPHV 429
           +L +M   D  +
Sbjct: 658 VLEEMASSDCEI 669



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 58/285 (20%), Positives = 120/285 (42%), Gaps = 17/285 (5%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQ-GELVPSTETINSIL-HACEESYE 61
           K  + P + +Y  LI+      ++  A +++ +M++ G +V +  T N+I+   C+E   
Sbjct: 420 KAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKE--- 476

Query: 62  FNLVRRIYPMICH---HNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM 118
              +++   ++ H   H ++ N+ T+   I    K    D A SLL    EM+ +     
Sbjct: 477 -GCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLL---SEMDTLRDEVS 532

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQA-NVKPDSQTFSYLIHNCSNE---EDIIKYYEQL 174
           Y  ++ G  + + +  A  + +EM     +   S TF+ LI   +     ++ +   E +
Sbjct: 533 YTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELM 592

Query: 175 KSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRT 233
              G   +   +  +I       + +KA ++  +  +     S V  + L+  L   GR 
Sbjct: 593 VQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRG 652

Query: 234 SDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            +A+ V EE+  + C ++      L   L  +G      +LL  +
Sbjct: 653 KEALQVLEEMASSDCEIDDLKCRKLYLALRGQGRGEEAAELLRRM 697


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 93/436 (21%), Positives = 187/436 (42%), Gaps = 32/436 (7%)

Query: 2   HAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYE 61
             K+  +P++ +Y  LI   C   ++  A  ++++M+Q +  P     N ++    +  +
Sbjct: 83  RGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGK 142

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
            +  R +  M+   +  P+  T+ S+I    +    D A  L++ +KE  L P    YNA
Sbjct: 143 IDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNA 202

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSY-LIHNCSNE----EDIIKYYEQL-- 174
           ++ G  ++  ++    +L+EM +A  +PD  TFSY  +  C  E    E+  K  E++  
Sbjct: 203 LLNGLCKQNQLEEVSKLLEEMVEAGREPD--TFSYNTVVACLCESGKYEEAGKILEKMIE 260

Query: 175 KSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE----VKSALVSALASH 230
           K  G  +  Y   +L++ +    + ++A +++ D    V  R        + L+   +  
Sbjct: 261 KKCGPDVVTY--NSLMDGFCKVSKMDEAERLLEDM---VGRRCAPTVITYTTLIGGFSRA 315

Query: 231 GRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCR 290
            R +DA  V E++ +AG + +      L++ L   G+L    +LLE + + D   D    
Sbjct: 316 DRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTY 375

Query: 291 LIL--HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLL 348
            IL     +  ++  A  LL+ + ++     +       + FC+    D      G  +L
Sbjct: 376 SILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDE-----GHKVL 430

Query: 349 QFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLA 408
           + +K E+   P       L+     A  ++ A  I       G+  +  SY  M +   +
Sbjct: 431 ELMK-EVSCTPDVVTYSTLIDGYCKANRMQDAFAIL------GISPDKASYSSMLEGLCS 483

Query: 409 SGNRKSASKLLSKMPK 424
           +G  + A +++  M K
Sbjct: 484 TGKVEEAQEVMDLMTK 499



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 59/281 (20%), Positives = 122/281 (43%), Gaps = 10/281 (3%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  I+P   +Y  L+   C   K+  A +++E MV+ +  P   T + +++   +  + +
Sbjct: 330 KAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVD 389

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             R +  M+     +PN  TF +MI    K    D  + +L+ +KE++  P    Y+ ++
Sbjct: 390 DARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLI 449

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQ 180
            GY +   +Q A  +L       + PD  ++S ++   CS    E+  +  + +   G  
Sbjct: 450 DGYCKANRMQDAFAIL------GISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCP 503

Query: 181 ITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
            T   +  +I         ++A +++ + +E   +      S L++ L    R  DAI V
Sbjct: 504 PTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINV 563

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
            + + E GC  +     +LI+      +++   Q  + + D
Sbjct: 564 LDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRD 604



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/196 (21%), Positives = 85/196 (43%), Gaps = 3/196 (1%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           A L I+P  ASY  ++   C   KV  A +V++ M +    P++     I+    +    
Sbjct: 463 AILGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERG 522

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           +   ++  ++     +PN  T+  +I+   K K  + A ++LD + E   +P  + Y ++
Sbjct: 523 DEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSL 582

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGG 179
           + G+ +   +  A    K M  +  +PD   ++ LI       N E  I+  + +   G 
Sbjct: 583 IDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGC 642

Query: 180 QITKYVFMALINAYTT 195
                 + +L+ + TT
Sbjct: 643 NPDAATYFSLMRSLTT 658



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 75/156 (48%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+S+ Y  +I   CD+ +   AL +++ M +    P+  T + +++   ++        +
Sbjct: 504 PTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINV 563

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
             ++      P+  T+ S+I    KI   D+AY     +++    P    YN +++G+ +
Sbjct: 564 LDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQ 623

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE 164
             +V+ A+ V++ M +    PD+ T+  L+ + + E
Sbjct: 624 SGNVEKAIEVMQLMLEKGCNPDAATYFSLMRSLTTE 659



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/261 (20%), Positives = 104/261 (39%), Gaps = 10/261 (3%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  ++  +I   C   KV     V+E M +    P   T ++++        +    R+
Sbjct: 405 PNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDG------YCKANRM 458

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
                   + P+  ++ SM+         + A  ++D + +    PT+S Y  I+ G   
Sbjct: 459 QDAFAILGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCD 518

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYV 185
            +    AL +L+ M +   +P+  T+S LI+  C  +  ED I   + +   G       
Sbjct: 519 VERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVAT 578

Query: 186 FMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           + +LI+ +    + + A Q      +   +      + L+S     G    AI V + + 
Sbjct: 579 YTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLML 638

Query: 245 EAGCNLEPRAVIALIEHLNSE 265
           E GCN +     +L+  L +E
Sbjct: 639 EKGCNPDAATYFSLMRSLTTE 659



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 75/391 (19%), Positives = 154/391 (39%), Gaps = 53/391 (13%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           PS  T  +++     +    +V  I   +      P+  T  +++    +I D D A S 
Sbjct: 22  PSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRALSH 81

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163
                +M   PTA  Y  ++ G  + + +  A  +L EM Q +  PD+      ++NC  
Sbjct: 82  FRG--KMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAA-----VYNC-- 132

Query: 164 EEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSA 222
                                    LI      G+ + AR V+ +  E          ++
Sbjct: 133 -------------------------LIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTS 167

Query: 223 LVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV---- 278
           L+          +A  + E++KE+G   +  A  AL+  L  + +L  + +LLEE+    
Sbjct: 168 LIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAG 227

Query: 279 HDPDYWMDGCCRLILHCV-RFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTD 337
            +PD +       ++ C+    +   A  +L+++ +K    ++       + FC+++  D
Sbjct: 228 REPDTFSY---NTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMD 284

Query: 338 PPDVQIGLDLLQFIKDELG--LPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYN 395
             +        + ++D +G    P+      L+G    A  L  A+ + ++   AG+  +
Sbjct: 285 EAE--------RLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPD 336

Query: 396 VLSYLWMYKAFLASGNRKSASKLLSKMPKDD 426
           +++Y  +      +G  + A +LL  M + D
Sbjct: 337 LVTYNCLLDGLCKAGKLEEAHELLEVMVEKD 367


>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 87/428 (20%), Positives = 184/428 (42%), Gaps = 24/428 (5%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
            +P   +Y  L+       +   A++V+++M      PS  T NS++ A       +   
Sbjct: 322 FSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAM 381

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +    +KP+  T+ +++S   K    D A  + ++++     P    +NA++  +
Sbjct: 382 ELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMH 441

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITK 183
             + +    + V +E++     PD  T++ L+        + ++   ++++K AG    +
Sbjct: 442 GNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPER 501

Query: 184 YVFMALINAYTTCGEFEKARQV---VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
             F  LI+AY+ CG F++A  +   +LDA   V       +A+++ALA  G    +  V 
Sbjct: 502 DTFNTLISAYSRCGFFDQAMAIYRRMLDA--GVTPDLSTYNAVLAALARGGLWEQSEKVL 559

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDYWMDGCCRLILHCV 296
            E+K+  C        +L+    +  E+ R+  L EE++    +P   +     L+    
Sbjct: 560 AEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVY--- 616

Query: 297 RFKQLSSATDLLKQLKDKFKD-DEMAMEYHFSEIFCQIATTDPPD-VQIGLDLLQFIKDE 354
                 S +DLL + +  F +  E       + +   ++       V    ++L FIKD 
Sbjct: 617 ------SKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDS 670

Query: 355 LGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKS 414
            G  PS    + L+         +++  I +E    G+  +++S+  +  A+  +G  K 
Sbjct: 671 -GFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKE 729

Query: 415 ASKLLSKM 422
           AS++ ++M
Sbjct: 730 ASRIFAEM 737



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/243 (20%), Positives = 111/243 (45%), Gaps = 13/243 (5%)

Query: 17  LITYSCDLLKVHVALD--------VVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           LITY+  +L V+  +         +V+ M    + P   T N+++ +C     +     +
Sbjct: 255 LITYNV-ILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEV 313

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +      P+  T+ +++ +  K +    A  +L +++     P+   YN++++ Y R
Sbjct: 314 FEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYAR 373

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYV 185
              +  A+ +  +M +  +KPD  T++ L+        ++  +K +E+++ AG Q     
Sbjct: 374 DGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICT 433

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIK 244
           F ALI  +   G F +  +V  + +I       V  + L++    +G  S+   V++E+K
Sbjct: 434 FNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMK 493

Query: 245 EAG 247
            AG
Sbjct: 494 RAG 496



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 79/398 (19%), Positives = 142/398 (35%), Gaps = 114/398 (28%)

Query: 100 AYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQ--------------- 144
           A SLL DL+   +      Y +++  Y      + A+MV K++E+               
Sbjct: 204 AASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILN 263

Query: 145 ---------------------ANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQ 180
                                + V PD  T++ LI +C   S  E+  + +E++K+AG  
Sbjct: 264 VYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFS 323

Query: 181 ITKYVFMALINAYT----------TCGEFEK-----------------ARQVVLDAEIPV 213
             K  + AL++ Y              E E                  AR  +LD  + +
Sbjct: 324 PDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMEL 383

Query: 214 KSRSEVK---------SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
           KS+   K         + L+S     G+   A+ V+EE++ AGC        ALI+   +
Sbjct: 384 KSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGN 443

Query: 265 EGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEY 324
            G    ++++ EE+             I  CV    + +   LL        D E+    
Sbjct: 444 RGNFVEMMKVFEEIK------------ICECV--PDIVTWNTLLAVFGQNGMDSEV---- 485

Query: 325 HFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIW 384
             S +F ++                      G  P R   + L+ A        +A  I+
Sbjct: 486 --SGVFKEMKRA-------------------GFVPERDTFNTLISAYSRCGFFDQAMAIY 524

Query: 385 KEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           +   +AG+  ++ +Y  +  A    G  + + K+L++M
Sbjct: 525 RRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEM 562



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 38/201 (18%), Positives = 88/201 (43%), Gaps = 3/201 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  L+    +  +V     + E++  G + P    + +++    +S       R 
Sbjct: 569 PNELTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERA 628

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +      P+  T  +M+S+  + +       +L+ +K+    P+ + YN++M  Y R
Sbjct: 629 FLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSR 688

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYV 185
            +  + +  +L+E+    +KPD  +F+ +I   C N   ++  + + ++K  G       
Sbjct: 689 TEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVIT 748

Query: 186 FMALINAYTTCGEFEKARQVV 206
           +   I +Y +   F +A  VV
Sbjct: 749 YNTFIASYASDSMFIEAIDVV 769



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 50/117 (42%)

Query: 42  LVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAY 101
             PS  T NS+++    +  F     I   I    +KP+  +F ++I    +      A 
Sbjct: 672 FTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEAS 731

Query: 102 SLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            +  ++K+  L P    YN  +A Y        A+ V+K M +   KP+  T++ LI
Sbjct: 732 RIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNGCKPNQNTYNSLI 788



 Score = 39.3 bits (90), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 34/171 (19%), Positives = 71/171 (41%), Gaps = 8/171 (4%)

Query: 7   ITPSSASYKKLI-TYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           I P +   K L+  YS   L        +E   QG   P   T+N+++         +  
Sbjct: 602 IEPQAVLLKTLVLVYSKSDLLTETERAFLELREQG-FSPDITTLNAMVSIYGRRRMVSKT 660

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             I   I      P+  T+ S++ +  + + F+ +  +L ++    + P    +N ++  
Sbjct: 661 NEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFA 720

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE------DIIKY 170
           Y R   ++ A  +  EM+   + PD  T++  I + +++       D++KY
Sbjct: 721 YCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKY 771


>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 608

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 114/238 (47%), Gaps = 12/238 (5%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P   ++ S+L AC E  +  L R +   +    +  NS    ++IS+  K  D  SA  +
Sbjct: 216 PDEMSLVSVLGACGELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGDLGSARRI 275

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS- 162
            D +   +++     +NA+++GY +      A+ +   M++  V  +  T + ++  C+ 
Sbjct: 276 FDGMAARDVIT----WNAVISGYAQNGMADEAISLFHAMKEDCVTENKITLTAVLSACAT 331

Query: 163 -NEEDIIKYYEQLKSAGG-QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK 220
               D+ K  ++  S  G Q   +V  ALI+ Y  CG    A++V    E+P K+ +   
Sbjct: 332 IGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLASAQRVF--KEMPQKNEAS-W 388

Query: 221 SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV--IALIEHLNSEGELNRLIQLLE 276
           +A++SALASHG+  +A+ +++ + + G    P  +  + L+      G +N   +L +
Sbjct: 389 NAMISALASHGKAKEALSLFQCMSDEGGGARPNDITFVGLLSACVHAGLVNEGYRLFD 446


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 122/239 (51%), Gaps = 10/239 (4%)

Query: 31  LDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL 90
           +++  +M +  + P+  T++SIL AC  S    L + I+  I  + ++ +     S+I L
Sbjct: 293 IELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDL 352

Query: 91  NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD 150
             K  +  SA ++  ++ + N++     +N +++GY +      AL++  +M +A VKPD
Sbjct: 353 YFKCGNIGSAENVFQNMPKTNVVS----WNVMISGYVKVGSYLEALVIFTDMRKAGVKPD 408

Query: 151 SQTFSYLIHNCSNEEDIIKYYEQ---LKSAGGQITKYVFMALINAYTTCGEFEKARQVVL 207
           + TF+ ++  CS    + K  E    +  +  +I + V  AL++ Y  CG  ++A  +  
Sbjct: 409 AITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIF- 467

Query: 208 DAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
             ++P +      S +++A  SHG+  +A+ ++E+++++    +    +A++   +  G
Sbjct: 468 -NQLPERDFVSWTS-MIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAG 524



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 96/211 (45%), Gaps = 14/211 (6%)

Query: 42  LVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAY 101
           L P   T  S+L AC         + ++  +       +     S + +  K   F+ A 
Sbjct: 102 LKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAI 161

Query: 102 SLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC 161
            L D++ E ++    + +N +++ Y++    + AL + +EM+ +  KPDS T + +I +C
Sbjct: 162 KLFDEMPERDV----ASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSC 217

Query: 162 SNEEDIIKYYE---QLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE 218
           +   D+ +  E   +L  +G  +  +V  AL++ Y  CG  E A++V    +     R  
Sbjct: 218 ARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQ-----RKN 272

Query: 219 VKS--ALVSALASHGRTSDAIIVYEEIKEAG 247
           V S  ++++  +  G +   I ++  + E G
Sbjct: 273 VVSWNSMIAGYSLKGDSKSCIELFRRMDEEG 303



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/234 (19%), Positives = 108/234 (46%), Gaps = 22/234 (9%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL++ E+M      P + T+ +++ +C    +    + I+  +       +     +++ 
Sbjct: 191 ALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVD 250

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K    + A  + + ++  N++     +N+++AGY  K D +  + + + M++  ++P
Sbjct: 251 MYGKCGCLEMAKEVFEQIQRKNVVS----WNSMIAGYSLKGDSKSCIELFRRMDEEGIRP 306

Query: 150 DSQTFSYLIHNCSNEEDIIKYYEQL-KSAGGQITK-------YVFMALINAYTTCGEFEK 201
              T S ++  CS   ++     QL K   G I +       +V  +LI+ Y  CG    
Sbjct: 307 TLTTLSSILMACSRSVNL-----QLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGS 361

Query: 202 ARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255
           A  V  +  +P K+     + ++S     G   +A++++ ++++AG  ++P A+
Sbjct: 362 AENVFQN--MP-KTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAG--VKPDAI 410



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 13/168 (7%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL +   M +  + P   T  S+L AC +       + I+  I    L+ N     +++ 
Sbjct: 393 ALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLD 452

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K    D A  + + L E + +   SM    +A Y        AL + ++M+Q++ KP
Sbjct: 453 MYAKCGAVDEALHIFNQLPERDFVSWTSM----IAAYGSHGQAFEALKLFEKMQQSDAKP 508

Query: 150 DSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYT 194
           D  TF  ++  CS+    ++   Y+ Q+      I +Y F   +  Y+
Sbjct: 509 DKVTFLAILSACSHAGLVDEGCYYFNQM------IAEYGFKPAVEHYS 550


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 103/460 (22%), Positives = 189/460 (41%), Gaps = 28/460 (6%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALD----VVEQMVQGELVPSTETINSILHACEE 58
           A L + P  ++   ++     LL  H  LD     + ++ Q  + P+T T N IL     
Sbjct: 122 AALALGPRRSALPSVVDTLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLAR 181

Query: 59  SYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM 118
           + +  LVRR++ ++      PN  TF  +I    K  +   A +L   +K M   P    
Sbjct: 182 NRQGGLVRRLFDLL----PVPNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVT 237

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE----EDIIKYYEQL 174
           YN+++ GY +  D++    ++ EM ++    D  T++ LI NC ++    E    Y+ ++
Sbjct: 238 YNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALI-NCFSKFGRMEKAYSYFGEM 296

Query: 175 KSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRT 233
           K  G       F   ++A+   G  ++A ++     +     +E   ++LV      GR 
Sbjct: 297 KRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRL 356

Query: 234 SDAIIVYEEIKEAGCNLEPRAV--IALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRL 291
            DAI++ +E+   G  L P  V    +++ L  EG++     +L  +       +     
Sbjct: 357 DDAIVLLDEMVHQG--LVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYT 414

Query: 292 ILHCVRFKQLSS--ATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQ 349
            L    F   +S  A DLL Q+K+K  + ++++        C+    D         LL 
Sbjct: 415 TLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAK-----SLLH 469

Query: 350 FIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLAS 409
            +    GL P+      ++ A   A     A  +  +  ++G   NV++Y  +      +
Sbjct: 470 KMAG-CGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKA 528

Query: 410 GNRKSASKLLSKMPK--DDPHVRFVIQACKQTYTIPSLQK 447
           G+   A    +KM +   DP+V+           I SL K
Sbjct: 529 GSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNK 568



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/318 (21%), Positives = 141/318 (44%), Gaps = 26/318 (8%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVRRIYPM 71
           +Y  LI       ++  A     +M +  +V +  T ++ + A C+E        +++  
Sbjct: 272 TYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGL-VQEAMKLFAQ 330

Query: 72  ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131
           +    + PN  T+ S++    K    D A  LLD++    L+P    Y  ++ G  ++  
Sbjct: 331 MRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGK 390

Query: 132 VQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMA 188
           V  A  VL  ME+  VK +   ++ LIH     +N E  +    Q+K+ G ++   ++  
Sbjct: 391 VAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGT 450

Query: 189 LINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           LI       + ++A+ ++   A   ++  + + + ++ AL   G+ S+A+ +  +I ++G
Sbjct: 451 LIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSG 510

Query: 248 CNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVH----DPDY-----WMDGCCRLILHCV 296
              +P  V   ALI+ L   G ++  I    ++     DP+       +DG C++     
Sbjct: 511 --FQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKI----- 563

Query: 297 RFKQLSSATDLLKQLKDK 314
               L+ A  L+ ++ DK
Sbjct: 564 --GSLNKAMHLMNEMIDK 579


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 124/287 (43%), Gaps = 10/287 (3%)

Query: 2   HAKLE------ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA 55
           HA +E      +TP   +Y  L+   C   +V  AL+++  M      P+  T NSI+  
Sbjct: 278 HAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDG 337

Query: 56  CEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPT 115
             +S       +I   + +  L P+  TF  +I+   K  +F+ A +L +++   N+ P 
Sbjct: 338 LCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPD 397

Query: 116 ASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYE 172
              + A++ G  +   V+ A  +L  M    V P+  T++ L+H  C +   E+  ++ E
Sbjct: 398 VMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLE 457

Query: 173 QLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHG 231
           ++ S+G       + +L+ A       + A Q+V   +       +   + LV  L   G
Sbjct: 458 EMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSG 517

Query: 232 RTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           +T  AI V EE+   G   +     A    L+  G L   ++LL  V
Sbjct: 518 KTEQAITVLEEMVGKGHQPDSFTFAACFGGLHRSGNLAGTMELLRVV 564



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/288 (21%), Positives = 115/288 (39%), Gaps = 10/288 (3%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
             L ++P + ++  LI   C   +   A +  + M+ G  VP+  T N++++   ++ + 
Sbjct: 217 GSLRVSPDTVTFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADKM 274

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
                +   +    + P+  T+  ++    K    D A  LL  +      P    +N+I
Sbjct: 275 ERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSI 334

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGG 179
           + G  +      A  +  ++    + PD  TF+ LI       N E     +E++ +   
Sbjct: 335 IDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNM 394

Query: 180 QITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAII 238
           Q     F ALI+     G+ E AR ++ L   + V       + LV  L   GR  +   
Sbjct: 395 QPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCE 454

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPD 282
             EE+  +GC  E     +L+  L      +  +QL+ ++     DPD
Sbjct: 455 FLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPD 502



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 83/431 (19%), Positives = 176/431 (40%), Gaps = 20/431 (4%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           A+  + P+  +Y  +I   C   ++   +++ E++V+    P   T N+++ +  ++ + 
Sbjct: 73  ARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDL 132

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL--KEMNLMPTASMYN 120
              RR++  +      PN  T+  +I+   K+   D A  L+ ++  K  +++P    YN
Sbjct: 133 EEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYN 192

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQAN--VKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAG 178
           + + G  ++     A  +++ +   +  V PD+ TFS LI          +       AG
Sbjct: 193 SFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNDDMIAG 252

Query: 179 GQITKYV-FMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDA 236
           G +   V + AL+N      + E+A  ++    +  V       S LV A     R  +A
Sbjct: 253 GYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEA 312

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYWMDGCCRLI 292
           + +   +   GC        ++I+ L          Q+  +V++    PD        LI
Sbjct: 313 LELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNI--LI 370

Query: 293 LHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIK 352
               +      A+ L +++  K    ++       +  C+        V+   D+L  + 
Sbjct: 371 AGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAG-----QVEAARDILDLMG 425

Query: 353 DELGLPPSRKCLDFLL-GACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGN 411
           + LG+PP+    + L+ G C + R ++      +E  ++G     ++Y  +  A   +  
Sbjct: 426 N-LGVPPNVVTYNVLVHGLCKSGR-IEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASR 483

Query: 412 RKSASKLLSKM 422
              A +L+SK+
Sbjct: 484 TDDALQLVSKL 494


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 89/432 (20%), Positives = 170/432 (39%), Gaps = 49/432 (11%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
            P    +  L +   DL  +  A+    +M +  + P T + N +LH   +  + + V+R
Sbjct: 57  VPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKR 116

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
            +  +     +P   T+  MI    K  D ++A  L +++K   L+P    YN+++ G+ 
Sbjct: 117 FFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFG 176

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC----SNEEDIIKYYEQLKSAGGQITK 183
           +   +   +   +EM+    +PD  T++ LI NC          +++Y ++K  G +   
Sbjct: 177 KVGRLDDTVCFFEEMKDMCCEPDVITYNALI-NCFCKFGKLPIGLEFYREMKGNGLKPNV 235

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             +  L++A+   G  ++A +  +D   + +       ++L+ A    G  SDA  +  E
Sbjct: 236 VSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNE 295

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW--MDGCCRLILHCVRFKQ 300
           + + G         ALI+ L     +    +L  ++        +     LI   V+ K 
Sbjct: 296 MLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKN 355

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS 360
           +  A +LL +LK +                            I  DLL +          
Sbjct: 356 MDRALELLNELKGR---------------------------GIKPDLLLYGT-------- 380

Query: 361 RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420
                F+ G C +   ++ A ++  E +  G+  N L Y  +  A+  SGN      LL 
Sbjct: 381 -----FIWGLC-SLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLD 434

Query: 421 KMPKDDPHVRFV 432
           +M + D  V  V
Sbjct: 435 EMKELDIEVTVV 446



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/318 (19%), Positives = 134/318 (42%), Gaps = 10/318 (3%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +  + P + S   L+     L K        + M+     P+  T N ++    +  +  
Sbjct: 88  RFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVE 147

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             R ++  +    L P++ T+ SMI    K+   D      +++K+M   P    YNA++
Sbjct: 148 AARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALI 207

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQ 180
             + +   +   L   +EM+   +KP+  ++S L+     E   +  IK+Y  ++  G  
Sbjct: 208 NCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLV 267

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIV 239
             +Y + +LI+A    G    A ++  +  ++ V+      +AL+  L    R  +A  +
Sbjct: 268 PNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEEL 327

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYWMDGCCRLILHC 295
           + ++  AG      +  ALI        ++R ++LL E+      PD  + G    I   
Sbjct: 328 FGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGT--FIWGL 385

Query: 296 VRFKQLSSATDLLKQLKD 313
              +++ +A  ++ ++K+
Sbjct: 386 CSLEKIEAAKVVMNEMKE 403



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/274 (19%), Positives = 127/274 (46%), Gaps = 11/274 (4%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  LI   CD  ++  A ++  +M    ++P+  + N+++H   ++   +    +   +
Sbjct: 307 TYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNEL 366

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               +KP+   + + I     ++  ++A  +++++KE  +   + +Y  +M  YF+  + 
Sbjct: 367 KGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNP 426

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGG-QITKYVFMA 188
              L +L EM++ +++    TF  LI   C N+     + Y+ ++ +  G Q    +F A
Sbjct: 427 TEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTA 486

Query: 189 LINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +I+      + E A     Q+V    +P ++     ++L+      G   +A+ + +++ 
Sbjct: 487 MIDGLCKDNQVEAATTLFEQMVQKGLVPDRT---AYTSLMDGNFKQGNVLEALALRDKMA 543

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           E G  L+  A  +L+  L+   +L +    LEE+
Sbjct: 544 EIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEM 577



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 64/315 (20%), Positives = 126/315 (40%), Gaps = 50/315 (15%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVRR 67
           P   +Y  LI   C   K+ + L+   +M    L P+  + ++++ A C+E      ++ 
Sbjct: 198 PDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIK- 256

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNL--------------- 112
            Y  +    L PN  T+ S+I  N KI +   A+ L +++ ++ +               
Sbjct: 257 FYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLC 316

Query: 113 --------------------MPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
                               +P  + YNA++ G+ + K++  AL +L E++   +KPD  
Sbjct: 317 DAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLL 376

Query: 153 TFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV--- 206
            +   I   CS E  E       ++K  G +    ++  L++AY   G   +   ++   
Sbjct: 377 LYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEM 436

Query: 207 --LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI-KEAGCNLEPRAVIALIEHLN 263
             LD E+ V +       L+  L  +   S A+  +  I  + G         A+I+ L 
Sbjct: 437 KELDIEVTVVTF----CVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLC 492

Query: 264 SEGELNRLIQLLEEV 278
            + ++     L E++
Sbjct: 493 KDNQVEAATTLFEQM 507


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 120/278 (43%), Gaps = 6/278 (2%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +I P++ S   ++   C    V  A DVV+ M Q  + P   T  +++       E +  
Sbjct: 279 KIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEA 338

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            +++ M+ H    PN  ++ ++I+   KI+  D A  L +++    L+P    YN ++ G
Sbjct: 339 VKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHG 398

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTF----SYLIHNCSNEEDIIKYYEQLKSAGGQI 181
                 +Q A+ + +EM      PD  T+     YL  NC + +  +   + ++ +    
Sbjct: 399 LCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNC-HLDKAMALLKAIEGSNLDP 457

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
              ++  +I+     GE E AR +  + +   +K      + +   L   G   +A  ++
Sbjct: 458 DIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLF 517

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            E+ E  C+ +      + +      E +R IQLLEE+
Sbjct: 518 MEMDENACSADGCTYNTITQGFLRNNETSRAIQLLEEM 555



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 135/328 (41%), Gaps = 38/328 (11%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHAC----EESYEFNL 64
           P    Y  LI   C       A+ ++  M +G   P      +++H+     +++  FNL
Sbjct: 177 PDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNL 236

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
              +        + PN  T  S++     + ++    +LL+++ +  +MP A     ++ 
Sbjct: 237 FSEMIT----KGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVD 292

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI-HNC--SNEEDIIKYYEQLKSAGGQI 181
              ++  V  A  V+  M Q+ V+PD  T++ LI  +C  S  ++ +K ++ +   G   
Sbjct: 293 ALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAP 352

Query: 182 TKYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAI 237
             + +  LIN Y      +KA     ++     IP    +   + L+  L   GR  DAI
Sbjct: 353 NVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIP---NTVTYNTLIHGLCHVGRLQDAI 409

Query: 238 IVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVH----DPDYW-----MD 286
            ++ E+    C   P  V    L+++L     L++ + LL+ +     DPD       +D
Sbjct: 410 ALFREM--VACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVID 467

Query: 287 GCCRLILHCVRFKQLSSATDLLKQLKDK 314
           G CR         +L  A DL   L  K
Sbjct: 468 GMCRA-------GELEDARDLFSNLSSK 488



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/280 (20%), Positives = 122/280 (43%), Gaps = 20/280 (7%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTET----INSILHACEESYEFNL 64
           PS   + K++T    + +    L +  +M    +  +  T    INS  H    ++ F++
Sbjct: 72  PSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTLNVLINSFCHLNRVNFAFSV 131

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
           + +I  + C    +P++ +F ++I           A  L D +      P   +Y  ++ 
Sbjct: 132 LAKILKLGC----QPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLIN 187

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEEDIIKY--YEQLKSAGGQI 181
           G  +      A+ +L+ ME+ N +PD   +  LIH+ C + +    +  + ++ + G   
Sbjct: 188 GLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISP 247

Query: 182 TKYVFMALINAYTTCGEFEKARQVV---LDAEIPVKSRSEVKSALVSALASHGRTSDAII 238
                 +L+ A    GE++    ++   +D++I   + S   + +V AL   G  + A  
Sbjct: 248 NIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAIS--LTTVVDALCKEGMVAQAHD 305

Query: 239 VYEEIKEAGCNLEPRAV--IALIEHLNSEGELNRLIQLLE 276
           V + + ++G  +EP  V   ALI+      E++  +++ +
Sbjct: 306 VVDMMFQSG--VEPDVVTYTALIDGHCLRSEMDEAVKVFD 343



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 62/156 (39%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y+ L+ Y C    +  A+ +++ +    L P  +    ++     + E    R +
Sbjct: 422 PDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDL 481

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    LKPN  T+  M     K    D A  L  ++ E         YN I  G+ R
Sbjct: 482 FSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQGFLR 541

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE 164
             +   A+ +L+EM       D  T + L+   S++
Sbjct: 542 NNETSRAIQLLEEMLARGFSCDVSTTTLLVGMLSDD 577


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 122/239 (51%), Gaps = 10/239 (4%)

Query: 31  LDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL 90
           +++  +M +  + P+  T++SIL AC  S    L + I+  I  + ++ +     S+I L
Sbjct: 485 IELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDL 544

Query: 91  NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD 150
             K  +  SA ++  ++ + N++     +N +++GY +      AL++  +M +A VKPD
Sbjct: 545 YFKCGNIGSAENVFQNMPKTNVVS----WNVMISGYVKVGSYLEALVIFTDMRKAGVKPD 600

Query: 151 SQTFSYLIHNCSNEEDIIKYYEQ---LKSAGGQITKYVFMALINAYTTCGEFEKARQVVL 207
           + TF+ ++  CS    + K  E    +  +  +I + V  AL++ Y  CG  ++A  +  
Sbjct: 601 AITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIF- 659

Query: 208 DAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
             ++P +      S +++A  SHG+  +A+ ++E+++++    +    +A++   +  G
Sbjct: 660 -NQLPERDFVSWTS-MIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAG 716



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 96/211 (45%), Gaps = 14/211 (6%)

Query: 42  LVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAY 101
           L P   T  S+L AC         + ++  +       +     S + +  K   F+ A 
Sbjct: 294 LKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAI 353

Query: 102 SLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC 161
            L D++ E ++    + +N +++ Y++    + AL + +EM+ +  KPDS T + +I +C
Sbjct: 354 KLFDEMPERDV----ASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSC 409

Query: 162 SNEEDIIKYYE---QLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE 218
           +   D+ +  E   +L  +G  +  +V  AL++ Y  CG  E A++V    +     R  
Sbjct: 410 ARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQ-----RKN 464

Query: 219 VKS--ALVSALASHGRTSDAIIVYEEIKEAG 247
           V S  ++++  +  G +   I ++  + E G
Sbjct: 465 VVSWNSMIAGYSLKGDSKSCIELFRRMDEEG 495



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/234 (19%), Positives = 108/234 (46%), Gaps = 22/234 (9%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL++ E+M      P + T+ +++ +C    +    + I+  +       +     +++ 
Sbjct: 383 ALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVD 442

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K    + A  + + ++  N++     +N+++AGY  K D +  + + + M++  ++P
Sbjct: 443 MYGKCGCLEMAKEVFEQIQRKNVVS----WNSMIAGYSLKGDSKSCIELFRRMDEEGIRP 498

Query: 150 DSQTFSYLIHNCSNEEDIIKYYEQL-KSAGGQITK-------YVFMALINAYTTCGEFEK 201
              T S ++  CS   ++     QL K   G I +       +V  +LI+ Y  CG    
Sbjct: 499 TLTTLSSILMACSRSVNL-----QLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGS 553

Query: 202 ARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255
           A  V  +  +P K+     + ++S     G   +A++++ ++++AG  ++P A+
Sbjct: 554 AENVFQN--MP-KTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAG--VKPDAI 602



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 13/168 (7%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL +   M +  + P   T  S+L AC +       + I+  I    L+ N     +++ 
Sbjct: 585 ALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLD 644

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K    D A  + + L E + +   SM    +A Y        AL + ++M+Q++ KP
Sbjct: 645 MYAKCGAVDEALHIFNQLPERDFVSWTSM----IAAYGSHGQAFEALKLFEKMQQSDAKP 700

Query: 150 DSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYT 194
           D  TF  ++  CS+    ++   Y+ Q+      I +Y F   +  Y+
Sbjct: 701 DKVTFLAILSACSHAGLVDEGCYYFNQM------IAEYGFKPAVEHYS 742


>gi|255586501|ref|XP_002533891.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526155|gb|EEF28491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 701

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/402 (20%), Positives = 173/402 (43%), Gaps = 19/402 (4%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  +I   C   +   +L++ E+M + E      T +S++H   E+   +   
Sbjct: 253 VYPNVVTYNIMINGLCKCGRFDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAV 312

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R+Y  I   +L  ++ T  +M++   +      ++ L   + + N     S YN ++ G 
Sbjct: 313 RVYKEIVESSLVVDAVTHNAMLNGFCRAGKIKESFELWMVMGKENCQTVVS-YNILIKGL 371

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE--DIIKYYEQLKSAGGQITK 183
           F    V+ A+ + + + +   +P+S T+  LIH  C N      +K +++ +   G++  
Sbjct: 372 FENGKVEEAISIWELLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAEDGPGKLDA 431

Query: 184 YVFMALINAYTTCGEFEKARQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
           Y + ++++     G  ++A  +V  +D     K    V + L++      +  DAI  + 
Sbjct: 432 YAYSSMVDGLCKEGRMDEAISIVNQMDKR-GYKLDPHVCNPLINGFVRASKLEDAINFFR 490

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNR----LIQLLEEVHDPDYWMDGCCRLILHCVR 297
           E++  GC+    +   LI+ L      +     + ++LE+   PD  M  C  L+    +
Sbjct: 491 EMECKGCSPTIVSYNTLIKGLCKAERFSEAYSFVKEMLEKEWKPD--MITCSLLMDGLCQ 548

Query: 298 FKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGL 357
            K++  A +L +Q  DK    ++ M        C +       ++  L L   +K    +
Sbjct: 549 EKKIEMALNLWQQALDKGFKPDITMYNILMHGLCSVCK-----LEDALQLYSHMKRSTCV 603

Query: 358 PPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSY 399
           P +    + L+      RD ++A  IW      GL  +++SY
Sbjct: 604 P-NLVTRNTLMEGLYKVRDYEKASEIWDCILKDGLHPDIISY 644



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 88/398 (22%), Positives = 154/398 (38%), Gaps = 55/398 (13%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P   + N++L+A  E  E++            ++ PN +T+  +I ++ K +  + A SL
Sbjct: 114 PGVRSYNTLLNAFVELNEWDRAESFSRYFESMDVSPNLQTYNILIKISCKKQQIEKAISL 173

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163
           LD +   NL P    Y  ++ G  +  D+ GAL V  EM    V  D   ++ LI     
Sbjct: 174 LDWMWSQNLKPDVFSYGTLINGMVKVGDLLGALKVFDEMSVRGVVADVTCYNMLIDGFFK 233

Query: 164 EEDIIKYYEQLKSAGGQITKY----VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE- 218
             D  K  E  +      + Y     +  +IN    CG F+++ ++    E   K+  E 
Sbjct: 234 HGDYDKGKEIWERLVKDCSVYPNVVTYNIMINGLCKCGRFDESLEI---WERMTKNEREK 290

Query: 219 ---VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLL 275
                S+L+  L   G    A+ VY+EI E+   ++     A++      G++    +L 
Sbjct: 291 DMFTYSSLIHGLCEAGNIDGAVRVYKEIVESSLVVDAVTHNAMLNGFCRAGKIKESFEL- 349

Query: 276 EEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIAT 335
                   WM      ++     + + S   L+K L   F++ ++       E+ C+   
Sbjct: 350 --------WM------VMGKENCQTVVSYNILIKGL---FENGKVEEAISIWELLCKKGC 392

Query: 336 TDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYN 395
             P     G+                     + G C N R L +A  I+KE E+     +
Sbjct: 393 R-PESTTYGV--------------------LIHGLCKNGR-LNKALKIFKEAEDGPGKLD 430

Query: 396 VLSYLWMYKAFLASGNRKSASKLLSKMPKD----DPHV 429
             +Y  M       G    A  ++++M K     DPHV
Sbjct: 431 AYAYSSMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHV 468



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 51/285 (17%), Positives = 127/285 (44%), Gaps = 14/285 (4%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           ++++P+  +Y  LI  SC   ++  A+ +++ M    L P   +  ++++   +  +   
Sbjct: 145 MDVSPNLQTYNILIKISCKKQQIEKAISLLDWMWSQNLKPDVFSYGTLINGMVKVGDLLG 204

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL-KEMNLMPTASMYNAIM 123
             +++  +    +  +   +  +I    K  D+D    + + L K+ ++ P    YN ++
Sbjct: 205 ALKVFDEMSVRGVVADVTCYNMLIDGFFKHGDYDKGKEIWERLVKDCSVYPNVVTYNIMI 264

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQ 180
            G  +      +L + + M +   + D  T+S LIH      N +  ++ Y+++  +   
Sbjct: 265 NGLCKCGRFDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRVYKEIVESSLV 324

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSA-----LVSALASHGRTSD 235
           +      A++N +   G+ +++ ++ +     V  +   ++      L+  L  +G+  +
Sbjct: 325 VDAVTHNAMLNGFCRAGKIKESFELWM-----VMGKENCQTVVSYNILIKGLFENGKVEE 379

Query: 236 AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           AI ++E + + GC  E      LI  L   G LN+ +++ +E  D
Sbjct: 380 AISIWELLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAED 424



 Score = 42.7 bits (99), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 97/234 (41%), Gaps = 14/234 (5%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQG--ELVP--STETINSILHACEESYEFNLVRRI 68
           +Y  ++   C   ++  A+ +V QM +   +L P      IN  + A +     N  R +
Sbjct: 433 AYSSMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFREM 492

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
               C     P   ++ ++I    K + F  AYS + ++ E    P     + +M G  +
Sbjct: 493 ECKGC----SPTIVSYNTLIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLLMDGLCQ 548

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CS--NEEDIIKYYEQLKSAGGQITKYV 185
           +K ++ AL + ++      KPD   ++ L+H  CS    ED ++ Y  +K +        
Sbjct: 549 EKKIEMALNLWQQALDKGFKPDITMYNILMHGLCSVCKLEDALQLYSHMKRSTCVPNLVT 608

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAI 237
              L+       ++EKA + + D  +      ++ S    +  L S  R SDAI
Sbjct: 609 RNTLMEGLYKVRDYEKASE-IWDCILKDGLHPDIISYNITIKGLCSCSRISDAI 661



 Score = 38.5 bits (88), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 30/158 (18%), Positives = 63/158 (39%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           E  P   +   L+   C   K+ +AL++ +Q +     P     N ++H      +    
Sbjct: 531 EWKPDMITCSLLMDGLCQEKKIEMALNLWQQALDKGFKPDITMYNILMHGLCSVCKLEDA 590

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            ++Y  +      PN  T  +++    K++D++ A  + D + +  L P    YN  + G
Sbjct: 591 LQLYSHMKRSTCVPNLVTRNTLMEGLYKVRDYEKASEIWDCILKDGLHPDIISYNITIKG 650

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163
                 +  A+  L +     + P + T++ L+    N
Sbjct: 651 LCSCSRISDAIEFLNDALNRGILPTAVTWNILVRAAVN 688


>gi|414588908|tpg|DAA39479.1| TPA: chloroplast RNA splicing4 [Zea mays]
          Length = 1438

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/292 (20%), Positives = 134/292 (45%), Gaps = 7/292 (2%)

Query: 1   MHAKLEITPSSASYKKLITY--SCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEE 58
           MH +  I P   S+  LI        L   VALD++ ++ Q  L P   T N+++ AC +
Sbjct: 247 MHDR-GIDPDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQ 305

Query: 59  SYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM 118
           S        ++  +     +P+  T+ +M+S++ +    + A  L  +L E   MP A  
Sbjct: 306 SSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRELVEKGFMPDAIT 365

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLK 175
           YN+++  + ++ +V       +++ +A  K +  T++ +IH       +   +  Y++++
Sbjct: 366 YNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMR 425

Query: 176 SAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTS 234
           + G       +  +I++        +A +V+ D  +  +K      SAL+ A A  GR +
Sbjct: 426 AMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSALICAYAKGGRRA 485

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
           DA   ++ +  +G   +  A + +++     G+  +++ L  ++ + +Y  D
Sbjct: 486 DAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKMLCLYRKMMNDNYRPD 537



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/295 (20%), Positives = 131/295 (44%), Gaps = 50/295 (16%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           ALD  E + +    P++  +  +L     + + ++   ++            + F +M+ 
Sbjct: 173 ALDAFEWLARSS-APASRAVAVVLGVLGRARQDSIAEEVFLRFAGEG--ATVQVFNAMMG 229

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQG--ALMVLKEMEQANV 147
           +  +   FD A  LLD + +  + P    +N ++    +   +    AL +L E+ Q+ +
Sbjct: 230 VYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSGL 289

Query: 148 KPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA-- 202
           +PD  T++ LI  C   SN ED +  +E + ++  +   + + A+++ +  CG+ E+A  
Sbjct: 290 RPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAER 349

Query: 203 --RQVVLDAEIP----------------------------VKS---RSEVK-SALVSALA 228
             R++V    +P                            VK+   ++E+  + ++    
Sbjct: 350 LFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYG 409

Query: 229 SHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQ---LLEEVHD 280
             GR   A+ +Y+E++  GC   P AV   +  ++S G++NR+ +   +LE++ D
Sbjct: 410 KMGRLDLAVGLYDEMRAMGCT--PDAVTYTV-MIDSLGKMNRIAEAGKVLEDMTD 461



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/201 (17%), Positives = 87/201 (43%), Gaps = 3/201 (1%)

Query: 9    PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
            P+   Y+ +I+  C   +      ++ +M      P    +N++L+    +  F+   ++
Sbjct: 883  PNMHLYRSMISLLCHHNRFRDVELMIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTTQV 942

Query: 69   YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
            Y  I    L+P+ +T+ ++I +  +    +  ++LL+++ +  L P    Y +++A   +
Sbjct: 943  YRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAK 1002

Query: 129  KKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITKYV 185
             +  + A  + +EM   + + +   +  ++    N  N          +K  G + T   
Sbjct: 1003 AELREQADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIAT 1062

Query: 186  FMALINAYTTCGEFEKARQVV 206
               L+ +Y T G+  +A  V+
Sbjct: 1063 MHILMTSYGTAGQPREAENVL 1083



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 77/390 (19%), Positives = 155/390 (39%), Gaps = 53/390 (13%)

Query: 80   NSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVL 139
            N   +  +I+  ++ + F  A  +  D++ + +  + S+Y +I++ Y +    + A  ++
Sbjct: 674  NCNLYEYLITCLIEAEFFSEACQVFCDMQFIGIEASKSIYESIISTYCKLGFPETAHRLM 733

Query: 140  KEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQ-------LKSAGGQITKYVFMALINA 192
             +  Q+ +  +  +   +I     +   IK ++Q       L+ A G I + ++ ALI+A
Sbjct: 734  DDALQSGIPLNILSCRVIIIEAYGK---IKLWQQAEILVKGLRQASG-IDRRIWNALIHA 789

Query: 193  YTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEIKEAGCNL 250
            Y   G +EKAR  V D  I       V S   ++ AL   GR  +  +V EE+++    +
Sbjct: 790  YAESGLYEKAR-AVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVEELQDMNFKI 848

Query: 251  EPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD-----GCCRLILHCVRFKQLSSAT 305
                V+ L++     G++  ++++   +    Y  +         L+ H  RF+ +    
Sbjct: 849  SKSTVLLLLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRDVEL-- 906

Query: 306  DLLKQLKDKFKDDEMAMEYHFSEIFCQIATTD--------------PPDVQI-------- 343
             ++ +++      ++A+      ++      D               PD           
Sbjct: 907  -MIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMY 965

Query: 344  --------GLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYN 395
                    G  LL  +    GL P  +    LL A   A   ++A  I++E  +     N
Sbjct: 966  CRSFRPEEGFTLLNEMGKR-GLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLN 1024

Query: 396  VLSYLWMYKAFLASGNRKSASKLLSKMPKD 425
               Y  M K +  +GN   A  LL+ M +D
Sbjct: 1025 RSIYHMMMKIYRNAGNHSKAENLLAVMKED 1054



 Score = 46.2 bits (108), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 62/324 (19%), Positives = 127/324 (39%), Gaps = 45/324 (13%)

Query: 33   VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL-- 90
            VVE++       S  T+  +L A  ++ +   V +IY  +      PN   +RSMISL  
Sbjct: 837  VVEELQDMNFKISKSTVLLLLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLC 896

Query: 91   ------NVKI---------------------------KDFDSAYSLLDDLKEMNLMPTAS 117
                  +V++                            +FD    +   + E  L P   
Sbjct: 897  HHNRFRDVELMIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDED 956

Query: 118  MYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQL 174
             YN ++  Y R    +    +L EM +  + P  Q++  L+   +     E   + +E++
Sbjct: 957  TYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEM 1016

Query: 175  KSAGGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRT 233
            +S   Q+ + ++  ++  Y   G   KA  ++ +  E  ++        L+++  + G+ 
Sbjct: 1017 RSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQP 1076

Query: 234  SDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN----RLIQLLEEVHDPDYWMDGCC 289
             +A  V   +K +   +       + +     G+ N    +L+++  +  +PD+ +  C 
Sbjct: 1077 REAENVLNNLKSSSLEVSTLPYSTVFDAYLKNGDYNHGTTKLLEMKRDGVEPDHQVWTC- 1135

Query: 290  RLILHCVRFKQLSSATDLLKQLKD 313
              I      +Q + A  LLK L+D
Sbjct: 1136 -FIRAASLCEQTADAILLLKSLQD 1158



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 48/242 (19%), Positives = 99/242 (40%), Gaps = 18/242 (7%)

Query: 1    MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
            + A LE  P   +Y  LI   C   +      ++ +M +  L P  ++  S+L A  ++ 
Sbjct: 947  LEAGLE--PDEDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAE 1004

Query: 61   EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
                  +I+  +   + + N   +  M+ +     +   A +LL  +KE  + PT +  +
Sbjct: 1005 LREQADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMH 1064

Query: 121  AIMAGYFRKKDVQGALMVLKEMEQANVK----PDSQTFSYLIHNCSNEEDIIKYYEQLKS 176
             +M  Y      + A  VL  ++ ++++    P S  F   + N        K  E +K 
Sbjct: 1065 ILMTSYGTAGQPREAENVLNNLKSSSLEVSTLPYSTVFDAYLKNGDYNHGTTKLLE-MKR 1123

Query: 177  AGGQITKYVFMALINAYTTCGEFEKARQVVL--------DAEIPVKSRSEVKSALVSALA 228
             G +    V+   I A + C   E+    +L          ++P++  +E   +L+S +A
Sbjct: 1124 DGVEPDHQVWTCFIRAASLC---EQTADAILLLKSLQDCGFDLPIRLLTERTPSLLSEIA 1180

Query: 229  SH 230
            ++
Sbjct: 1181 NY 1182


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 87/411 (21%), Positives = 170/411 (41%), Gaps = 32/411 (7%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
           A ++ ++M++  L P   T N ++HA C++ +      R++  +    + PN  TF   I
Sbjct: 279 ARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLE-SERLFDKVLKRGVCPNLFTFNIFI 337

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
               K    D A  LL  +    L P    YN ++ G  RK  V  A   L +M     +
Sbjct: 338 QGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFE 397

Query: 149 PDSQTFSYLIHNCSNEEDIIKYYEQLKSA---GGQITKYVFMALINAYTTCGEFEKARQV 205
           P+  T++ +I     +  ++     LK A   G +  ++ + +L+N +   G+ ++A  V
Sbjct: 398 PNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAV 457

Query: 206 VLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
             D     ++    V + L+  L   G    A+ +  E+ E GC  +      +I  L  
Sbjct: 458 FKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCK 517

Query: 265 EGEL---NRLI------QLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKF 315
            G L   N LI        + ++   +  +DG CR +       +L SA +L+ ++  + 
Sbjct: 518 MGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQL-------KLDSAIELVNRMWSQG 570

Query: 316 KDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIK--DELGLPPSRKCLDFLLGACVN 373
              ++          C+ A ++        ++++  K   E G  P+    + ++ +  N
Sbjct: 571 MTPDVITYNTLLNGLCKTAKSE--------EVMEIFKAMTEKGCAPNIITYNTIIESLCN 622

Query: 374 ARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424
           ++ +  A  +  E ++ GL  +V+S+  +   F   G+   A  L   M K
Sbjct: 623 SKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEK 673



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/344 (21%), Positives = 144/344 (41%), Gaps = 44/344 (12%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           + P   +Y  +I   C   +V  A + + +MV G   P+  T NSI+   C++    +  
Sbjct: 361 LRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVD-A 419

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            RI         KP+  T+ S+++   +  D D A ++  D     L P+  +YN ++ G
Sbjct: 420 NRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKG 479

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH-----NCSNEEDIIKYYEQLKSAGGQ 180
             ++  +  AL ++ EM +   KPD  T++ +I+      C ++ + +         G  
Sbjct: 480 LCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHL--------IGDA 531

Query: 181 ITK------YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK---------SALVS 225
           ITK      + +  L++ Y         RQ+ LD+ I + +R   +         + L++
Sbjct: 532 ITKGCIPDIFTYNTLVDGY--------CRQLKLDSAIELVNRMWSQGMTPDVITYNTLLN 583

Query: 226 ALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----P 281
            L    ++ + + +++ + E GC         +IE L +  ++N  + LL E+      P
Sbjct: 584 GLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTP 643

Query: 282 DYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYH 325
           D    G   LI    +   L  A  L + ++ ++        Y+
Sbjct: 644 DVVSFG--TLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYN 685



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 81/169 (47%), Gaps = 1/169 (0%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           +TP   +Y  L+   C   K    +++ + M +    P+  T N+I+ +   S + N   
Sbjct: 571 MTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAV 630

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL-KEMNLMPTASMYNAIMAG 125
            +   +    L P+  +F ++I+   K+ D D AY L   + K+ ++  T + YN I++ 
Sbjct: 631 DLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISA 690

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQL 174
           +  + +++ AL +  EM++    PD+ T+  LI       ++ + Y+ L
Sbjct: 691 FSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFL 739



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/276 (18%), Positives = 112/276 (40%), Gaps = 5/276 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + PS   Y  LI   C    +  AL ++ +M +    P   T N I++   +    +   
Sbjct: 466 LRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDAN 525

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +          P+  T+ +++    +    DSA  L++ +    + P    YN ++ G 
Sbjct: 526 HLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGL 585

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITK 183
            +    +  + + K M +    P+  T++ +I +  N + +   +    ++KS G     
Sbjct: 586 CKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDV 645

Query: 184 YVFMALINAYTTCGEFEKARQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
             F  LI  +   G+ + A  +   ++ +  V   +   + ++SA +       A+ ++ 
Sbjct: 646 VSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFS 705

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEE 277
           E+K+ GC+ +      LI+     G +N+  + L E
Sbjct: 706 EMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLE 741



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 68/159 (42%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M + L+ T     Y + + +     K+  A+D  E+M      PS  + N+I++   E  
Sbjct: 145 MRSNLDNTLLEGVYVEAMRFYGRKGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFG 204

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
            FN   ++Y  +    ++ +  T+   I    +     +A  LL ++  +     A  Y 
Sbjct: 205 YFNQAHKVYMRMKDKKVESDVYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYC 264

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159
            ++ G++   D   A  +  EM +  + PD  TF+ L+H
Sbjct: 265 TVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNKLVH 303


>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
          Length = 837

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 99/452 (21%), Positives = 178/452 (39%), Gaps = 42/452 (9%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  LI   C+   +  A ++  QM    + PS   +NS+L    ++  +    ++
Sbjct: 358 PNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKL 417

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +       +  N  T+  M+S   K    D A SLLD++    ++P    YN ++ G+ R
Sbjct: 418 FDEAVDCGVA-NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCR 476

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKYV 185
           K ++  A  V  +M   ++KP+  T+S LI       + E  +  ++Q+ S     T + 
Sbjct: 477 KGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFT 536

Query: 186 FMALINAYTTCGEFEKAR----QVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
           F  +IN     G+  +AR      + +  IP        +++V      G    A+ VY 
Sbjct: 537 FNTIINGLCKVGQMSEARDKLKNFLEEGFIP---SCMTYNSIVDGFIKEGNIDSALAVYR 593

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD--GCCRLILHCVRFK 299
           E+ E G +       +LI        ++  ++  +E+ +    +D      LI    + +
Sbjct: 594 EMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRR 653

Query: 300 QLSSATDLLKQLKD---------------KFKD---DEMAMEYH----FSEIFCQIAT-T 336
            + SA DL  +L +                F+D    E A+ ++       I C + T T
Sbjct: 654 DMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYT 713

Query: 337 DPPDVQIGLDLLQFIKD------ELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENA 390
              D  +    L F  D        G+ P       L+    N   L+ A  I +E +  
Sbjct: 714 TLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRK 773

Query: 391 GLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
            +  +VL Y  +   +   GN K A  L  +M
Sbjct: 774 NMTPSVLIYNTLIAGYFREGNLKEAFTLHDEM 805



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 122/266 (45%), Gaps = 4/266 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  SY  +I   C    + +A  V   M+  +L P+  T + ++    +  +     
Sbjct: 460 MVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKAL 519

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +   N+ P   TF ++I+   K+     A   L +  E   +P+   YN+I+ G+
Sbjct: 520 DLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGF 579

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-C-SNEEDI-IKYYEQLKSAGGQITK 183
            ++ ++  AL V +EM +  V P+  T++ LI+  C SN  D+ +K  ++++  G ++  
Sbjct: 580 IKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDV 639

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             + ALI+ +    + E A+ +  +  E+ +     V ++++S          A++ Y++
Sbjct: 640 TAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKK 699

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGEL 268
           +       +      LI+ L  EG L
Sbjct: 700 MINDRIPCDLGTYTTLIDGLLKEGRL 725



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 134/305 (43%), Gaps = 16/305 (5%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           L I P+  ++  +I   C + ++  A D ++  ++   +PS  T NSI+    +    + 
Sbjct: 528 LNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDS 587

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
              +Y  +C   + PN  T+ S+I+   K    D A    D+++E  L    + Y+A++ 
Sbjct: 588 ALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALID 647

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQI 181
           G+ +++D++ A  +  E+ +  + P+   ++ +I    + +N E  + +Y+++ +     
Sbjct: 648 GFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPC 707

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS-----ALVSALASHGRTSDA 236
               +  LI+     G    A  + ++    + S+  V        LV+ L + G+  +A
Sbjct: 708 DLGTYTTLIDGLLKEGRLVFASDLYME----MLSKGIVPDIITFHVLVNGLCNKGQLENA 763

Query: 237 IIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILH 294
             + EE+     N+ P  +I   LI     EG L     L +E+ D     D     IL 
Sbjct: 764 RKILEEMDRK--NMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILI 821

Query: 295 CVRFK 299
             +FK
Sbjct: 822 NGKFK 826



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 46/229 (20%), Positives = 92/229 (40%), Gaps = 10/229 (4%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           ++  A+D    M+  +++P    +N +L A         +R +Y  +    +  +  T  
Sbjct: 165 RIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKMVLRGIYGDHFTVH 224

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
            M+   +K    + A     + KE  +   A  Y+ I+    +K +    L +L+EM++ 
Sbjct: 225 VMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKER 284

Query: 146 NVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
              P   TF+ +I  C    N  + ++  E++ + G  +   V  +L+  Y   G  + A
Sbjct: 285 GWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSA 344

Query: 203 ----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
                ++  D   P K      S L+    + G    A  +Y ++K  G
Sbjct: 345 LNLFNKITEDGLFPNKV---TYSVLIEGCCNSGNIEKASELYTQMKLNG 390



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 92/203 (45%), Gaps = 10/203 (4%)

Query: 222 ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDP 281
            +V A    GR  +A   + E KE G  L+  A   +I+ +  +   N  ++LLEE+ + 
Sbjct: 225 VMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKER 284

Query: 282 DYWMDG---CCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDP 338
             W+        +I+ CV    +  A  L +++ +  K   + +     + +C     D 
Sbjct: 285 G-WVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDS 343

Query: 339 PDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLS 398
                 L+L   I ++ GL P++     L+  C N+ ++++A  ++ + +  G+P +V +
Sbjct: 344 -----ALNLFNKITED-GLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFN 397

Query: 399 YLWMYKAFLASGNRKSASKLLSK 421
              + + +L +   + ASKL  +
Sbjct: 398 VNSLLRGYLKAPLWEEASKLFDE 420



 Score = 45.8 bits (107), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 6/135 (4%)

Query: 291 LILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQF 350
           ++  C++  ++  A +  ++ K++     + ++     I  Q A    P+  +GL+LL+ 
Sbjct: 226 MVRACLKEGRVEEAEEYFRETKER----GVKLDAGAYSIIIQ-AVCKKPNSNLGLELLEE 280

Query: 351 IKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASG 410
           +K E G  PS      ++ ACV   ++  A  + +E  N G P N++    + K + A G
Sbjct: 281 MK-ERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQG 339

Query: 411 NRKSASKLLSKMPKD 425
           N  SA  L +K+ +D
Sbjct: 340 NLDSALNLFNKITED 354



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 96/240 (40%), Gaps = 38/240 (15%)

Query: 11  SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYP 70
           + +Y  +I   C     ++ L+++E+M +   VPS  T  S++ AC              
Sbjct: 255 AGAYSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVAC-------------- 300

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
            +   N+         MI+                  K MNL+   S+    M GY  + 
Sbjct: 301 -VAQGNMVEALRLKEEMINCG----------------KPMNLVVATSL----MKGYCAQG 339

Query: 131 DVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFM 187
           ++  AL +  ++ +  + P+  T+S LI  C N  +I K    Y Q+K  G   + +   
Sbjct: 340 NLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVN 399

Query: 188 ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           +L+  Y     +E+A ++  +A     +     + ++S L   G+  +A  + + +   G
Sbjct: 400 SLLRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQG 459


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/287 (21%), Positives = 134/287 (46%), Gaps = 13/287 (4%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M ++    P++ +Y  LI   C    +  A ++ +QM +  + P+  T+N+++    +  
Sbjct: 406 MRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHG 465

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
             N     +  +    LK N+ T+ ++I     + + + A  L D++ E    P A +Y 
Sbjct: 466 RINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYY 525

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK---SA 177
            +++G  +   +  A  VL +M++A   PD  +F+ LI+    +  + + YE LK   +A
Sbjct: 526 TLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENA 585

Query: 178 GGQITKYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRT 233
           G +     +  LI+ ++  G+F  A    +++V +  +P         AL+ A   +G  
Sbjct: 586 GIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVV---TYGALIHAYCLNGNL 642

Query: 234 SDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEV 278
            +A+ ++ ++      + P  VI   LI  L  + +++  + L++++
Sbjct: 643 DEAMKIFRDMSSTS-KVPPNTVIYNILINSLCRKNQVDLALSLMDDM 688



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/356 (21%), Positives = 148/356 (41%), Gaps = 47/356 (13%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           A+ E+ P+S    +LI+  C   +   A DV+  +++   V    + N++L A   + EF
Sbjct: 262 AEHEVFPNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREF 321

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAY--------------------- 101
             +  +   +   +++PN  TF  +I+   K +  D A                      
Sbjct: 322 KRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVI 381

Query: 102 ---SLLDDL-----KEMNL------------MPTASMYNAIMAGYFRKKDVQGALMVLKE 141
              +L+D L     +E  L            MP    YN ++ GY +   ++ A  +  +
Sbjct: 382 TYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQ 441

Query: 142 MEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGE 198
           M +  V P+  T + L+        I   ++++ +++  G +     + ALI A+     
Sbjct: 442 MNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNN 501

Query: 199 FEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIA 257
            EKA ++  +  E      + V   L+S L+  G+   A  V  ++KEAG + +  +   
Sbjct: 502 IEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNV 561

Query: 258 LIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQLSSATDLLKQL 311
           LI     + +L+   ++L+E+ +     DG     LI H  +    S+A  L+K++
Sbjct: 562 LINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKM 617



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 90/445 (20%), Positives = 173/445 (38%), Gaps = 76/445 (17%)

Query: 26  KVHVALDVVEQMVQ--GELVPSTETINSIL----------HACEESYEFNLVRRIYPMIC 73
           +V  AL ++++M+Q   E  P++ T + +            A +E     LV +      
Sbjct: 207 RVDDALHLLDEMLQPKAEFPPNSNTGHIVFSALSKRDKVGRAVDEEEIVGLVSKF----A 262

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
            H + PNS     +IS   +    D A+ +L  L ++  +  A+  NA++    R ++ +
Sbjct: 263 EHEVFPNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFK 322

Query: 134 GALMVLKEMEQANVKPDSQTFSYLI-HNCS--NEEDIIKYYEQLKSAGGQITKYVFMALI 190
               +L EM++ +++P+  TF  LI H C     ++ ++ +E++   GG+   ++    +
Sbjct: 323 RMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMN--GGESNGFLVEPDV 380

Query: 191 NAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNL 250
             Y T          ++D    V  R E    LV  + S  R     + Y  + +  C  
Sbjct: 381 ITYNT----------LIDGLCKV-GRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKA 429

Query: 251 EP-RAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLK 309
               A   L + +N +G    ++ L       +  +DG C       +  +++ A +   
Sbjct: 430 SMIEAARELFDQMNKDGVPPNVVTL-------NTLVDGMC-------KHGRINGAVEFFN 475

Query: 310 QLKDKFKDDEMAMEYHFSEIFCQIATTD--------------PPDV-----------QIG 344
           +++ K               FC +   +               PD            Q G
Sbjct: 476 EMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAG 535

Query: 345 -LDLLQFI---KDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYL 400
            LD   F+     E G  P     + L+        L  A+ + KE ENAG+  + ++Y 
Sbjct: 536 KLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYN 595

Query: 401 WMYKAFLASGNRKSASKLLSKMPKD 425
            +   F  +G+  +A +L+ KM K+
Sbjct: 596 TLISHFSKTGDFSTAHRLMKKMVKE 620



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/279 (20%), Positives = 119/279 (42%), Gaps = 9/279 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQM-VQGELVPSTETINSILHACEESYEFNLV 65
           + P   +Y  LI   C + +    L +VE+M  Q   +P+T T N ++    ++      
Sbjct: 376 VEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAA 435

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           R ++  +    + PN  T  +++    K    + A    ++++   L   A  Y A++  
Sbjct: 436 RELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRA 495

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQIT 182
           +    +++ A+ +  EM +A   PD+  +  LI   S    + +      ++K AG    
Sbjct: 496 FCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPD 555

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
              F  LIN +    + ++A +++ + E   +K      + L+S  +  G  S A  + +
Sbjct: 556 IVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMK 615

Query: 242 EIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEV 278
           ++ + G  L P  V   ALI      G L+  +++  ++
Sbjct: 616 KMVKEG--LVPTVVTYGALIHAYCLNGNLDEAMKIFRDM 652



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 69/152 (45%), Gaps = 1/152 (0%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P   +Y  LI++         A  ++++MV+  LVP+  T  +++HA   +   +   
Sbjct: 587 IKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAM 646

Query: 67  RIY-PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           +I+  M     + PN+  +  +I+   +    D A SL+DD+K   + P  + +NA+  G
Sbjct: 647 KIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKG 706

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYL 157
              K  +  A  ++  M +    PD  T   L
Sbjct: 707 LQEKNWLSKAFELMDRMTEHACNPDYITMEIL 738


>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
 gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
          Length = 638

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 132/297 (44%), Gaps = 12/297 (4%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY-PMICHHNLKPNSETFR 85
           V  A+ +  Q+   +  P+ +  NS++       ++  V  +Y  M    +  P++ T+ 
Sbjct: 175 VSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYGKVHELYNEMSTEGHCFPDTMTYS 234

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           ++IS   K+   DSA  LL+++KE  + PT  +Y  ++  +F+  DV GAL + +EM   
Sbjct: 235 ALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQ 294

Query: 146 NVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
             +PD  T++ LI        I     ++ +++  G +    V   +IN     G  + A
Sbjct: 295 YCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDA 354

Query: 203 RQVVLDAEI--PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE 260
            ++  +      + S     + + +   S  R S+    +E +KE+G +        LI+
Sbjct: 355 MKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILID 414

Query: 261 HLNSEGELNRLIQLLEEVHDPDYWMDGC----CRLILHCVRFKQLSSATDLLKQLKD 313
                  + + + LLEE+ +  +    C    C LI    + K+   A +L ++LK+
Sbjct: 415 GFCKTNRMEKAMMLLEEMDEKGF--PPCPAAYCSLIDALGKAKRYDLACELFQELKE 469



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/279 (21%), Positives = 117/279 (41%), Gaps = 5/279 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P++  Y  LIT    L  VH AL + E+M      P   T   ++    ++   +   
Sbjct: 261 MQPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAY 320

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
             +  +     +P++    +MI+   K    D A  L  ++  +  +P+   YN I+   
Sbjct: 321 HFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKAL 380

Query: 127 FRKKDVQGAL-MVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQIT 182
           F  K     +    + M+++ + P S T+S LI   C     E  +   E++   G    
Sbjct: 381 FESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPC 440

Query: 183 KYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
              + +LI+A      ++ A ++  +  E    S + V + ++  L   GR  DAI +++
Sbjct: 441 PAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFD 500

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           E+ + GC  +  A  AL+  L   G L+  +  +  + +
Sbjct: 501 EMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQE 539



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/203 (19%), Positives = 93/203 (45%), Gaps = 3/203 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I+PSS +Y  LI   C   ++  A+ ++E+M +    P      S++ A  ++  ++L  
Sbjct: 402 ISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLAC 461

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +  +    ++  +  MI    K    D A ++ D++ ++   P    YNA+M+G 
Sbjct: 462 ELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGL 521

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK--- 183
            R   +  AL  ++ M++    PD  +++ +++  +      +  E L +      +   
Sbjct: 522 ARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDV 581

Query: 184 YVFMALINAYTTCGEFEKARQVV 206
             +  ++ A +  G FE+A +++
Sbjct: 582 VSYNTVLGALSHAGMFEEAAKLM 604


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 115/245 (46%), Gaps = 12/245 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL++ ++M++  + P   T+ ++L AC +S    L R+++  I  H    N +   ++I 
Sbjct: 219 ALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALID 278

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           L  K  + ++A  L   L   +++     +N ++ GY      + AL++ ++M ++  KP
Sbjct: 279 LYSKCGELETACGLFQGLSNKDVIS----WNTLIGGYTHMNLYKEALLLFQDMLRSGEKP 334

Query: 150 DSQTFSYLIHNCSNEEDI-----IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204
           +  T   ++  C++   I     I  Y   +  G      +  +LI+ Y  CG+ E A+Q
Sbjct: 335 NDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQ 394

Query: 205 VVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
            V D+ +     S   +A++   A HGR + A  ++  +++ G   +    + L+   + 
Sbjct: 395 -VFDSMLNRSLSSW--NAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSH 451

Query: 265 EGELN 269
            G L+
Sbjct: 452 SGMLD 456



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/203 (20%), Positives = 83/203 (40%), Gaps = 30/203 (14%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL +   MV   L+P++ T   +L +C +S  F   ++++  +       +     S+IS
Sbjct: 87  ALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLIS 146

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASM---------------------------YNAI 122
           + V+    + A  + D     +++   ++                           +NA 
Sbjct: 147 MYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAX 206

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGG 179
           ++GY    + + AL + K+M + NV+PD  T   ++  C+    I    + +  +   G 
Sbjct: 207 ISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGF 266

Query: 180 QITKYVFMALINAYTTCGEFEKA 202
                +  ALI+ Y+ CGE E A
Sbjct: 267 GXNLKIVNALIDLYSKCGELETA 289



 Score = 46.6 bits (109), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 88/201 (43%), Gaps = 20/201 (9%)

Query: 51  SILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDS---AYSLLDDL 107
           S+LH C+       +R I+  +    L   +     ++   V    FD    A S+ D +
Sbjct: 7   SLLHXCKT---LQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTI 63

Query: 108 KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE--- 164
           +E    P   ++N +  G+    D   AL +   M    + P+S TF +L+ +C+     
Sbjct: 64  QE----PXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAF 119

Query: 165 EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--A 222
           ++  + + Q+   G  +  Y+  +LI+ Y   G  E A++V   +     S  +V S  A
Sbjct: 120 KEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKS-----SHRDVVSYTA 174

Query: 223 LVSALASHGRTSDAIIVYEEI 243
           L++  AS G    A  +++EI
Sbjct: 175 LITGYASRGXIESAHKMFDEI 195


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 113/241 (46%), Gaps = 12/241 (4%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   ++  LI   C  LK+  AL +VE+M +  + P T T NS+L+   ++ + N V   
Sbjct: 428 PDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNET 487

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +      PN  T+  +I    +    + A  ++  + +  L P A  +N ++ G+ R
Sbjct: 488 FQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCR 547

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYV 185
             D++GA ++ +++E+      + TF+ LI   S + ++    K ++++ S G +   Y 
Sbjct: 548 NGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYT 607

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
           +  LI+        ++A   +++          +K   + ++++ GR  +++ V   + +
Sbjct: 608 YRVLIDGSCKTANVDRAYMHLVEM---------IKKGFIPSMSTFGRVINSLTVNHRVFQ 658

Query: 246 A 246
           A
Sbjct: 659 A 659



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 81/409 (19%), Positives = 159/409 (38%), Gaps = 50/409 (12%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS 86
            H A  + +QM+   + P+    N +LHA  +  +      +   +    +  N  T+  
Sbjct: 167 THDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNI 226

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
            I    +      A  L+D ++   + P    YN ++ G  +K   Q A+  L+ M    
Sbjct: 227 WIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQG 285

Query: 147 VKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA---GGQITKYVFMALINAYTTCGEFEKAR 203
             PD  T++ +I        + +  E LK A   G    +  + +LIN     G+ E+A 
Sbjct: 286 CLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERAL 345

Query: 204 QVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
           ++  +A+   +K    V ++LV  L   G    A+ V  E+ E GC+             
Sbjct: 346 ELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCH------------- 392

Query: 263 NSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAM 322
                         ++   +  ++G C++         +S AT ++         ++  M
Sbjct: 393 -------------PDIQTYNIVINGLCKM-------GNISDATVVM---------NDAIM 423

Query: 323 EYHFSEIFCQIATTDPPDVQIGLD-LLQFIKD--ELGLPPSRKCLDFLLGACVNARDLKR 379
           + +  ++F      D    ++ LD  LQ ++   E G+ P     + +L     A  +  
Sbjct: 424 KGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNE 483

Query: 380 AHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPH 428
            +  ++E    G   N ++Y  + + F  S   + ASK++ KM ++  H
Sbjct: 484 VNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLH 532



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 55/282 (19%), Positives = 113/282 (40%), Gaps = 8/282 (2%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  LI   C       A+  + +M+    +P   T N+I+    +         +
Sbjct: 253 PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATEL 312

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
                     P+  T+ S+I+      D + A  L ++ +   + P   +YN+++ G   
Sbjct: 313 LKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCL 372

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKYV 185
           +  +  AL V+ EM +    PD QT++ +I+      N  D           G     + 
Sbjct: 373 QGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFT 432

Query: 186 FMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           F  LI+ Y    + + A Q+V    E  +   +   +++++ L   G+ ++    ++E+ 
Sbjct: 433 FNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMI 492

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNR----LIQLLEEVHDPD 282
             GC+  P     LIE+     ++      ++++ +E   PD
Sbjct: 493 LKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPD 534


>gi|359492929|ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Vitis vinifera]
          Length = 513

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 131/284 (46%), Gaps = 11/284 (3%)

Query: 6   EITPSSASYKKLITYS------CDLLKVHVALDVVEQMV-QGELVPSTETINSILHACEE 58
           E+  S  SY  LITYS      C   ++  A+++ E+MV + +++P   T N++++    
Sbjct: 225 EMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCH 284

Query: 59  SYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM 118
             + +   +I   +  +   PN   + ++++   K    + A  + D++K + L P    
Sbjct: 285 GEKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVG 344

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLK 175
           Y  ++  + R   V  A+ +LK+M +   + D+ TF+ ++     E   E+     E+L 
Sbjct: 345 YTTLINFFCRAGRVDEAMELLKDMRENKCRADTVTFNVILGGLCREGRFEEARGMLERLP 404

Query: 176 SAGGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTS 234
             G  + K  +  ++N+    GE +KA Q+V L     V       + L+  L   G+  
Sbjct: 405 YEGVYLNKASYRIVLNSLCREGELQKATQLVGLMLGRGVLPHFATSNELLVHLCEAGKVG 464

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           DA++    + E G   EP +   L+E +  E +L    +LL+++
Sbjct: 465 DAVMALLGLLELGFKPEPNSWALLVELICRERKLLPAFELLDDL 508



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 137/274 (50%), Gaps = 9/274 (3%)

Query: 44  PSTETINSILHACEESYEFNLVRR-IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYS 102
           PS + I++ L+   ES + +L R+ +       NL+PN+  F  ++  + K  D DSA+ 
Sbjct: 162 PSLKAISTCLNLLVESNQVDLTRKFLLNSKKSLNLEPNTCIFNILVKHHCKNGDIDSAFE 221

Query: 103 LLDDLKEMNL-MPTASMYNAIMAGYFRKKDVQGALMVLKEM-EQANVKPDSQTFSYLIHN 160
           +++++K+ ++  P    Y+ ++ G      ++ A+ + +EM  +  + PD+ T++ LI+ 
Sbjct: 222 VVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALING 281

Query: 161 CSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAE-IPVKSR 216
             + E +   +K  E +K  G     + + AL+N +   G  E+A++V  + + + +K  
Sbjct: 282 FCHGEKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPD 341

Query: 217 SEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276
           +   + L++     GR  +A+ + ++++E  C  +      ++  L  EG       +LE
Sbjct: 342 TVGYTTLINFFCRAGRVDEAMELLKDMRENKCRADTVTFNVILGGLCREGRFEEARGMLE 401

Query: 277 EV-HDPDYWMDGCCRLILHCV-RFKQLSSATDLL 308
            + ++  Y      R++L+ + R  +L  AT L+
Sbjct: 402 RLPYEGVYLNKASYRIVLNSLCREGELQKATQLV 435


>gi|42567647|ref|NP_568141.2| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|122223689|sp|Q0WMY5.1|PP365_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g04810, chloroplastic; AltName: Full=Maize PPR4
           homolog; Short=AtPPR4; Flags: Precursor
 gi|110739199|dbj|BAF01515.1| membrane-associated salt-inducible protein-like [Arabidopsis
           thaliana]
 gi|332003406|gb|AED90789.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 952

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/383 (18%), Positives = 161/383 (42%), Gaps = 47/383 (12%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
            L V +++ +    P+  T   +++   +  + +    +  ++    +K N +T+  MI+
Sbjct: 468 GLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMIN 527

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
             VK+KD+ +A+++ +D+ +  + P   +YN I++ +    ++  A+  +KEM++   +P
Sbjct: 528 GFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRP 587

Query: 150 DSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
            ++TF  +IH  +   D+   ++ ++ ++  G   T + F  LIN      + EKA +++
Sbjct: 588 TTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEIL 647

Query: 207 LDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
            +  +  V +     + ++   AS G T  A   +  ++  G +++     AL++     
Sbjct: 648 DEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKS 707

Query: 266 GELNRLIQLLEEVHDPDYWMDGCCRLIL--HCVRFKQLSSATDLLKQLKDKFKDDEMAME 323
           G +   + + +E+   +   +     IL     R   +  A DL++Q+K +         
Sbjct: 708 GRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKE--------- 758

Query: 324 YHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLI 383
                                           G+ P        + AC  A D+ RA   
Sbjct: 759 --------------------------------GVKPDIHTYTSFISACSKAGDMNRATQT 786

Query: 384 WKEYENAGLPYNVLSYLWMYKAF 406
            +E E  G+  N+ +Y  + K +
Sbjct: 787 IEEMEALGVKPNIKTYTTLIKGW 809



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 110/280 (39%), Gaps = 39/280 (13%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P    Y  +I+  C +  +  A+  V++M +    P+T T   I+H   +S +     
Sbjct: 550 MKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSL 609

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++ M+      P   TF  +I+  V+ +  + A  +LD++    +      Y  IM GY
Sbjct: 610 EVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGY 669

Query: 127 FRKKD-----------------------------------VQGALMVLKEMEQANVKPDS 151
               D                                   +Q AL V KEM   N+  +S
Sbjct: 670 ASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNS 729

Query: 152 QTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
             ++ LI   +   D+ +     +Q+K  G +   + + + I+A +  G+  +A Q + +
Sbjct: 730 FVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEE 789

Query: 209 AE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
            E + VK   +  + L+   A       A+  YEE+K  G
Sbjct: 790 MEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMG 829



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 92/443 (20%), Positives = 180/443 (40%), Gaps = 48/443 (10%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSIL-------HACEES 59
           ITP+S  Y  LI        +  AL  V +M +  +  S  T + I+       HA    
Sbjct: 340 ITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAAD 399

Query: 60  YEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMY 119
           Y F+  +RI+  +       N+  +  +I  + +  + + A +L+ +++E  +    ++Y
Sbjct: 400 YWFDEAKRIHKTL-------NASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIY 452

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQ---LKS 176
           + +M GY    D +  L+V K +++    P   T+  LI+  +    I K  E    +K 
Sbjct: 453 HTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKE 512

Query: 177 AGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSD 235
            G +     +  +IN +    ++  A  V  D  +  +K    + + ++SA    G    
Sbjct: 513 EGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDR 572

Query: 236 AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC------ 289
           AI   +E+++       R  + +I      G++ R +++ + +        GC       
Sbjct: 573 AIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRC-----GCVPTVHTF 627

Query: 290 -RLILHCVRFKQLSSATDLLKQLKDKFKDDEM------AMEYHFSEIFCQIATTDPPDVQ 342
             LI   V  +Q+  A ++L         DEM      A E+ +++I    A+    D  
Sbjct: 628 NGLINGLVEKRQMEKAVEIL---------DEMTLAGVSANEHTYTKIMQGYASVG--DTG 676

Query: 343 IGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWM 402
              +    +++E GL       + LL AC  +  ++ A  + KE     +P N   Y  +
Sbjct: 677 KAFEYFTRLQNE-GLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNIL 735

Query: 403 YKAFLASGNRKSASKLLSKMPKD 425
              +   G+   A+ L+ +M K+
Sbjct: 736 IDGWARRGDVWEAADLIQQMKKE 758



 Score = 43.5 bits (101), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 57/383 (14%), Positives = 151/383 (39%), Gaps = 41/383 (10%)

Query: 78  KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALM 137
           KP+   F  M+    +  D   A    + ++   + PT+ +Y +++  Y   +D+  AL 
Sbjct: 306 KPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALS 365

Query: 138 VLKEMEQANVKPDSQTFSYLIHNCS---NEEDIIKYYEQLKSAGGQITKYVFMALINAYT 194
            +++M++  ++    T+S ++   S   + E    ++++ K     +   ++  +I A+ 
Sbjct: 366 CVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHC 425

Query: 195 TCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPR 253
                E+A  +V +  E  + +   +   ++            ++V++ +KE  C   P 
Sbjct: 426 QTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKE--CGFTPT 483

Query: 254 AVI--ALIEHLNSEGELNRLIQLLEEVHDPD--YWMDGCCRLILHCVRFKQLSSATDLLK 309
            V    LI      G++++ +++   + +    + +     +I   V+ K  ++A  + +
Sbjct: 484 VVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFE 543

Query: 310 QLKDKFKDDEMAMEYHFSEIFCQIATTD------------------------------PP 339
            +  +    ++ +  +    FC +   D                                
Sbjct: 544 DMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSG 603

Query: 340 DVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSY 399
           D++  L++   ++   G  P+    + L+   V  R +++A  I  E   AG+  N  +Y
Sbjct: 604 DMRRSLEVFDMMR-RCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTY 662

Query: 400 LWMYKAFLASGNRKSASKLLSKM 422
             + + + + G+   A +  +++
Sbjct: 663 TKIMQGYASVGDTGKAFEYFTRL 685


>gi|255574572|ref|XP_002528197.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532409|gb|EEF34204.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 642

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 133/297 (44%), Gaps = 12/297 (4%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICH-HNLKPNSETFR 85
           V+ AL V  Q+   +  P+  T NS++   ++      V  IY  +C+  N  P++ T+ 
Sbjct: 179 VNKALSVFYQIKGRKCKPAATTYNSMILMLKQEGHLEKVHEIYNEMCNDGNCFPDTVTYS 238

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           ++IS   K+  +DSA  L D++KE  L PTA +Y  ++  YF+   V+ AL V+KEM+  
Sbjct: 239 ALISAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKALDVIKEMKDK 298

Query: 146 NVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
                  T++  I         +D  + +  +   G +    +  +LIN     G  E  
Sbjct: 299 GCTLTVFTYTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLEVT 358

Query: 203 RQVVLDAE-IPVKSRSEVKSALVSAL-ASHGRTSDAIIVYEEIKEAGCNLEPRAVI--AL 258
            ++    E    K      + ++ AL       S+A   +E++K  GC + P +     L
Sbjct: 359 LKLFRKMESWQCKPNVVTYNTVIKALFECKAPASEAASWFEKMK--GCGIAPSSFTYSIL 416

Query: 259 IEHLNSEGELNRLIQLLEEVHDPDY--WMDGCCRLILHCVRFKQLSSATDLLKQLKD 313
           I+       + + + LLEE+ +  +       C LI    + K+  +A +L  +LK+
Sbjct: 417 IDGFCKTNRIEKALLLLEEMDEKGFPPCPAAYCSLINSLGKVKRYEAANELFLELKE 473



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 86/447 (19%), Positives = 175/447 (39%), Gaps = 63/447 (14%)

Query: 9   PSSASYKKLITY---SCDLLKVHVALDVVEQMVQ-GELVPSTETINSILHACEESYEFNL 64
           P++ +Y  +I        L KVH   ++  +M   G   P T T ++++ A  +   ++ 
Sbjct: 196 PAATTYNSMILMLKQEGHLEKVH---EIYNEMCNDGNCFPDTVTYSALISAFGKLGHYDS 252

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
             R++  +  + L P ++ + +++ +  K+   + A  ++ ++K+     T   Y   + 
Sbjct: 253 AIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKALDVIKEMKDKGCTLTVFTYTEWIK 312

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH------------------------- 159
           G  +   V  A  V  +M +   KPD    + LI+                         
Sbjct: 313 GLGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLEVTLKLFRKMESWQCKP 372

Query: 160 NCSNEEDIIK--------------YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           N      +IK              ++E++K  G   + + +  LI+ +      EKA  +
Sbjct: 373 NVVTYNTVIKALFECKAPASEAASWFEKMKGCGIAPSSFTYSILIDGFCKTNRIEKA--L 430

Query: 206 VLDAEIPVKSRSEVKSA---LVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
           +L  E+  K      +A   L+++L    R   A  ++ E+KE   +   R    +I+H 
Sbjct: 431 LLLEEMDEKGFPPCPAAYCSLINSLGKVKRYEAANELFLELKENCGHSSARVYAVMIKHF 490

Query: 263 NSEGELNRLIQLLEEVH----DPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDD 318
              G L+  + L  E+      PD +      L+   VR   +  A  LL+ + +     
Sbjct: 491 GKCGRLSEAVDLFNEMEKLGSKPDVYAYNA--LMSGMVRAGMIDEAQSLLRTMDENGCSP 548

Query: 319 EMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLK 378
           ++      + I   +A T  PD  I  ++   +K  + + P     + +LG   +A   +
Sbjct: 549 DLN---SHNIILNGLARTGVPDRAI--EMFAKMKSSI-IKPDAVSYNTVLGCLSHAGLFE 602

Query: 379 RAHLIWKEYENAGLPYNVLSYLWMYKA 405
            A  + +E    G  YN ++Y  + +A
Sbjct: 603 EAAKLMREMNLKGFEYNNITYTSILEA 629



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/203 (18%), Positives = 92/203 (45%), Gaps = 3/203 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I PSS +Y  LI   C   ++  AL ++E+M +    P      S++++  +   +    
Sbjct: 406 IAPSSFTYSILIDGFCKTNRIEKALLLLEEMDEKGFPPCPAAYCSLINSLGKVKRYEAAN 465

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +  +    ++  +  MI    K      A  L ++++++   P    YNA+M+G 
Sbjct: 466 ELFLELKENCGHSSARVYAVMIKHFGKCGRLSEAVDLFNEMEKLGSKPDVYAYNALMSGM 525

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITK 183
            R   +  A  +L+ M++    PD  + + +++  +     +  I+ + ++KS+  +   
Sbjct: 526 VRAGMIDEAQSLLRTMDENGCSPDLNSHNIILNGLARTGVPDRAIEMFAKMKSSIIKPDA 585

Query: 184 YVFMALINAYTTCGEFEKARQVV 206
             +  ++   +  G FE+A +++
Sbjct: 586 VSYNTVLGCLSHAGLFEEAAKLM 608



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/271 (20%), Positives = 119/271 (43%), Gaps = 19/271 (7%)

Query: 23  DLLKVHVALDVVEQMVQG-----ELVPSTETINSILHACEES-YEFNLVRRIYPMICHHN 76
           ++LK+ V ++V  Q  +           + +  +++H+ +E+ +   + + I  M+    
Sbjct: 99  EVLKIDVEINVKIQFFKWAGKRRNFEHDSSSFMALIHSLDEAGFYGEMWKTIQDMVRSST 158

Query: 77  LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGAL 136
              +S     ++ L  K K  + A S+   +K     P A+ YN+++    ++  ++   
Sbjct: 159 CVISSVYLSEIVKLLGKAKMVNKALSVFYQIKGRKCKPAATTYNSMILMLKQEGHLEKVH 218

Query: 137 MVLKEM-EQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINA 192
            +  EM    N  PD+ T+S LI       + +  I+ ++++K  G   T  ++  L+  
Sbjct: 219 EIYNEMCNDGNCFPDTVTYSALISAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGI 278

Query: 193 YTTCGEFEKARQVVLDAE-----IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           Y    + EKA  V+ + +     + V + +E     +  L   GR  DA  V+ ++ + G
Sbjct: 279 YFKLDKVEKALDVIKEMKDKGCTLTVFTYTE----WIKGLGKAGRVDDAYRVFLDMIKDG 334

Query: 248 CNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           C  +   + +LI  L   G L   ++L  ++
Sbjct: 335 CKPDVVLINSLINILGKVGRLEVTLKLFRKM 365


>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59900
 gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 907

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 88/428 (20%), Positives = 177/428 (41%), Gaps = 20/428 (4%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           L  +PS A+   L+       K+  AL++V+++V   + P+    N+++ +  +  +F+ 
Sbjct: 326 LRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHE 385

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
              ++  +    L+PN  T+  +I +  +    D+A S L ++ +  L  +   YN+++ 
Sbjct: 386 AELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLIN 445

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQI 181
           G+ +  D+  A   + EM    ++P   T++ L+    ++  I   ++ Y ++   G   
Sbjct: 446 GHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAP 505

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
           + Y F  L++     G    A ++  + AE  VK      + ++      G  S A    
Sbjct: 506 SIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFL 565

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRL-ILHC-VRF 298
           +E+ E G   +  +   LI  L   G+ +     ++ +H  +  ++  C   +LH   R 
Sbjct: 566 KEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCRE 625

Query: 299 KQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPP----DVQIGLDLLQFIKDE 354
            +L  A  + +++  +  D ++          C     D      D ++   LL+ + D 
Sbjct: 626 GKLEEALSVCQEMVQRGVDLDLV---------CYGVLIDGSLKHKDRKLFFGLLKEMHDR 676

Query: 355 LGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKS 414
            GL P       ++ A     D K A  IW    N G   N ++Y  +      +G    
Sbjct: 677 -GLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNE 735

Query: 415 ASKLLSKM 422
           A  L SKM
Sbjct: 736 AEVLCSKM 743



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 122/282 (43%), Gaps = 4/282 (1%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
            K+ + P+  +Y  LI   C   K+  AL  + +MV   L  S    NS+++   +  + 
Sbjct: 394 GKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDI 453

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           +        + +  L+P   T+ S++         + A  L  ++    + P+   +  +
Sbjct: 454 SAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTL 513

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK---SAGG 179
           ++G FR   ++ A+ +  EM + NVKP+  T++ +I     E D+ K +E LK     G 
Sbjct: 514 LSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGI 573

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEV-KSALVSALASHGRTSDAII 238
               Y +  LI+     G+  +A+  V          +E+  + L+      G+  +A+ 
Sbjct: 574 VPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALS 633

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           V +E+ + G +L+      LI+      +      LL+E+HD
Sbjct: 634 VCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHD 675



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 73/400 (18%), Positives = 170/400 (42%), Gaps = 38/400 (9%)

Query: 42  LVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAY 101
           L+P   T++++LH   +   F L   ++  +    ++P+   +  +I    ++KD   A 
Sbjct: 188 LLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAK 247

Query: 102 SLLDDLK----EMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYL 157
            ++  ++    ++N++P    YN ++ G  +K+ V  A+ + K++   ++KPD  T+  L
Sbjct: 248 EMIAHMEATGCDVNIVP----YNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTL 303

Query: 158 IHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPV 213
           ++     ++    ++  +++       ++    +L+      G+ E+A  +V    +  V
Sbjct: 304 VYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGV 363

Query: 214 KSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRL 271
                V +AL+ +L    +  +A ++++ + + G  L P  V    LI+     G+L+  
Sbjct: 364 SPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIG--LRPNDVTYSILIDMFCRRGKLDTA 421

Query: 272 IQLLEEVHDP---------DYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAM 322
           +  L E+ D          +  ++G      HC +F  +S+A   + ++ +K  +  +  
Sbjct: 422 LSFLGEMVDTGLKLSVYPYNSLING------HC-KFGDISAAEGFMAEMINKKLEPTVVT 474

Query: 323 EYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHL 382
                  +C         +   L L   +  + G+ PS      LL     A  ++ A  
Sbjct: 475 YTSLMGGYCS-----KGKINKALRLYHEMTGK-GIAPSIYTFTTLLSGLFRAGLIRDAVK 528

Query: 383 IWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           ++ E     +  N ++Y  M + +   G+   A + L +M
Sbjct: 529 LFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEM 568



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 109/273 (39%), Gaps = 12/273 (4%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQG----ELVPSTETINSILHACEESYEFNLVRRIY 69
           Y  L+   C   K+  AL V ++MVQ     +LV     I+  L   +    F L++ ++
Sbjct: 615 YTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMH 674

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
                  LKP+   + SMI    K  DF  A+ + D +     +P    Y A++ G  + 
Sbjct: 675 ----DRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKA 730

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA---GGQITKYVF 186
             V  A ++  +M+  +  P+  T+   +   +  E  ++   +L +A   G       +
Sbjct: 731 GFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATY 790

Query: 187 MALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
             LI  +   G  E+A +++       V       + +++ L        AI ++  + E
Sbjct: 791 NMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTE 850

Query: 246 AGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            G   +  A   LI      GE+ +  +L  E+
Sbjct: 851 KGIRPDRVAYNTLIHGCCVAGEMGKATELRNEM 883



 Score = 43.1 bits (100), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 39/216 (18%), Positives = 89/216 (41%), Gaps = 4/216 (1%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           A+  + P+  +Y  +I   C+   +  A + +++M +  +VP T +   ++H    + + 
Sbjct: 534 AEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQA 593

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           +  +     +   N + N   +  ++    +    + A S+  ++ +  +      Y  +
Sbjct: 594 SEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVL 653

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGG 179
           + G  + KD +    +LKEM    +KPD   ++ +I   S   D       ++ + + G 
Sbjct: 654 IDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGC 713

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKS 215
              +  + A+IN     G F    +V+     PV S
Sbjct: 714 VPNEVTYTAVINGLCKAG-FVNEAEVLCSKMQPVSS 748


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 120/254 (47%), Gaps = 6/254 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P   +Y  LI   C L  V  A D+V +M +  + PS ET N+++ A   + +     
Sbjct: 222 IRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCF 281

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +    +K +  +F S++    K      A ++LDD+   ++ P A +YN+I+  Y
Sbjct: 282 TVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAY 341

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITK 183
               D + A +++++M+ + V     T++ L+        I +  E    L++ G +   
Sbjct: 342 IESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDV 401

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             +  +I+A    G+ +KA +++ +  +  ++        LVSALAS GR  D   +Y++
Sbjct: 402 VSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQ 461

Query: 243 IKEAGCNLEPRAVI 256
           +     N+EP + I
Sbjct: 462 MLHK--NVEPSSSI 473



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 90/468 (19%), Positives = 197/468 (42%), Gaps = 65/468 (13%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           + + P+  +Y  +I        +     + +QM+     P+  T N +L     +   + 
Sbjct: 45  MGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDE 104

Query: 65  VRRIYPMICHHNLKPNSETF-------------RSMISL--------------------N 91
            R +   +  H++ P+  T+             R+M+SL                    N
Sbjct: 105 TRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLN 164

Query: 92  VKIKDFDSAYS--LLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              KD   A +  +L+ L    L+PT  +YN ++ GY + +D++GA  + ++M+  +++P
Sbjct: 165 GLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRP 224

Query: 150 DSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D  T++ LI+     E + K  +   +++ +G   +   F  LI+AY T G+ EK   V+
Sbjct: 225 DHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVL 284

Query: 207 LD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLN 263
            D  +  +KS      ++V A   +G+  +A+ + +++     ++ P A +  ++I+   
Sbjct: 285 SDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYK--DVAPNAQVYNSIIDAYI 342

Query: 264 SEGELNRLIQLLEEVHDP---------DYWMDGCCRLILHCVRFKQLSSATDLLKQLKDK 314
             G+  +   L+E++ +          +  + G C       R  Q+  A +L+  L+++
Sbjct: 343 ESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLC-------RSSQIDEAEELIYTLRNQ 395

Query: 315 FKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNA 374
               ++          C    TD       L+LLQ + ++ G+ P+ +    L+ A  +A
Sbjct: 396 GLRPDVVSYNTIISACCNKGDTDK-----ALELLQEM-NKYGIRPTLRTYHTLVSALASA 449

Query: 375 RDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
             +     ++++  +  +  +   Y  M  A++   N    + L  +M
Sbjct: 450 GRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEM 497



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 95/464 (20%), Positives = 185/464 (39%), Gaps = 22/464 (4%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P + SY  +I       K   AL V ++MV   +VP+  T N+++    +  +     R+
Sbjct: 14  PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRL 73

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              + H   KPN  T+  ++S   +    D    L+D++   ++ P    Y+ +  G  R
Sbjct: 74  RDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTR 133

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYV 185
             + +  L +  E  +  V   + T S L++    +  + K     E L   G   T  +
Sbjct: 134 TGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVI 193

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +  LIN Y    +   A  +    +   ++      +AL++ L      + A  +  E++
Sbjct: 194 YNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEME 253

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD--GCCRLILHCVRFKQLS 302
           ++G +        LI+   + G+L +   +L ++       D      ++    +  ++ 
Sbjct: 254 KSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIP 313

Query: 303 SATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRK 362
            A  +L  +   +KD     + + S I   I + D     +   L++ +K+  G+  S  
Sbjct: 314 EAVAILDDM--IYKDVAPNAQVYNSIIDAYIESGDTEQAFL---LVEKMKNS-GVSASIV 367

Query: 363 CLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
             + LL     +  +  A  +     N GL  +V+SY  +  A    G+   A +LL +M
Sbjct: 368 TYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEM 427

Query: 423 PKDDPHVRFVIQACKQTY-TIPSLQKERGFEKDRDTL---LLHK 462
            K      + I+   +TY T+ S     G   D + L   +LHK
Sbjct: 428 NK------YGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHK 465



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 72/387 (18%), Positives = 160/387 (41%), Gaps = 12/387 (3%)

Query: 39  QGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFD 98
           +G   P   + N ++     S + +   +++  +    + PN  T+ +MI  +VK  D +
Sbjct: 9   EGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLE 68

Query: 99  SAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
           + + L D +      P    YN +++G  R   +    +++ EM   ++ PD  T+S L 
Sbjct: 69  AGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILF 128

Query: 159 HNCSNEED---IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVK 214
              +   +   ++  + +    G  +  Y    L+N     G+  KA QV+ +     + 
Sbjct: 129 DGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLV 188

Query: 215 SRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQL 274
             + + + L++          A  ++E++K      +     ALI  L     + +   L
Sbjct: 189 PTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDL 248

Query: 275 LEEVHDP--DYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQ 332
           + E+     D  ++    LI       QL     +L  ++ K    ++       + FC+
Sbjct: 249 VMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCK 308

Query: 333 IATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGL 392
                P  V I  D++   KD   + P+ +  + ++ A + + D ++A L+ ++ +N+G+
Sbjct: 309 NGKI-PEAVAILDDMIY--KD---VAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGV 362

Query: 393 PYNVLSYLWMYKAFLASGNRKSASKLL 419
             ++++Y  + K    S     A +L+
Sbjct: 363 SASIVTYNLLLKGLCRSSQIDEAEELI 389



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 33/176 (18%), Positives = 74/176 (42%), Gaps = 3/176 (1%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++ P++  Y  +I    +      A  +VE+M    +  S  T N +L     S + +  
Sbjct: 326 DVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEA 385

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +   + +  L+P+  ++ ++IS      D D A  LL ++ +  + PT   Y+ +++ 
Sbjct: 386 EELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSA 445

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAG 178
                 V     + ++M   NV+P S  +  ++     C N+  +    +++   G
Sbjct: 446 LASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKG 501



 Score = 38.1 bits (87), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 21/106 (19%), Positives = 53/106 (50%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   SY  +I+  C+      AL+++++M +  + P+  T ++++ A   +   + + 
Sbjct: 397 LRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDME 456

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNL 112
            +Y  + H N++P+S  +  M+   V+ ++     SL  ++ E  +
Sbjct: 457 CLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGI 502


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 130/294 (44%), Gaps = 11/294 (3%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  LI   C+  ++  A  + ++M   +L+P   + N++++ C E  + +   ++
Sbjct: 311 PDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKL 370

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    +KPN+ T   M+    K    D A + +  ++E    P    YN ++ GY +
Sbjct: 371 LEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCK 430

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA---GGQITKYV 185
             ++  A   + EM + N+K DS T + ++     E+ + + Y+ L SA   G  I +  
Sbjct: 431 AGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVS 490

Query: 186 FMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +  LI  Y   G  ++A ++  +  E  +   +   + ++  L   G+T  AI    E+ 
Sbjct: 491 YGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELL 550

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQ----LLEEVHDPDYWMDGCCRLILH 294
           E+G   +      ++     EG++ +  Q    ++E    PD +    C ++L 
Sbjct: 551 ESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVF---TCNILLR 601



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 132/295 (44%), Gaps = 8/295 (2%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           V  + +     ++  +VP+  T N +++  C E+ +F        ++  +N  P++ T+ 
Sbjct: 189 VSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLEN-KFKDAVEFLNVMGKYNCSPDNVTYN 247

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           +++    K      A  LL D+K   L+P  + YN ++ GY +   ++ A  V++ M Q 
Sbjct: 248 TILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQN 307

Query: 146 NVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
           N+ PD  T++ LI+   NE   E+  K  +++++         +  LIN      +  +A
Sbjct: 308 NLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEA 367

Query: 203 RQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEH 261
            +++ + +E  VK  +   + +V      G+  DA     +++E+G + +      LI  
Sbjct: 368 FKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLING 427

Query: 262 LNSEGELNRLIQLLEEVHDPDYWMDGCC-RLILHCV-RFKQLSSATDLLKQLKDK 314
               G +    + ++E+   +  MD      IL  + R K+L  A  LL   + +
Sbjct: 428 YCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKR 482



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 119/291 (40%), Gaps = 41/291 (14%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHAC------EESY 60
            +P   +Y  LI   C    +  A   +++M +  +   + T+N+IL         EE+Y
Sbjct: 414 FSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAY 473

Query: 61  EF---------------------------NLVR--RIYPMICHHNLKPNSETFRSMISLN 91
           +                            N+ R  +++  +    + P++ T+  +I   
Sbjct: 474 KLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGL 533

Query: 92  VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151
            +    + A S L++L E  L+P  + YN I+ GY R+ DV+ A     +M + + KPD 
Sbjct: 534 CQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDV 593

Query: 152 QTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
            T + L+     E   E  +K +    S G  I    +  LI +    G  + A  ++ +
Sbjct: 594 FTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSE 653

Query: 209 A-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
             E  +       +A+++AL   GR  +A     ++ E G NL P  V+ L
Sbjct: 654 MEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKG-NL-PDQVLQL 702



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/261 (20%), Positives = 105/261 (40%), Gaps = 16/261 (6%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNL 64
           EI PS+ +Y  +I   C   K   A+  + ++++  L+P   T N+ILH  C E  +   
Sbjct: 518 EIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREG-DVEK 576

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
             + +  +  ++ KP+  T   ++         + A  L +             YN ++ 
Sbjct: 577 AFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLIT 636

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA--GGQIT 182
              ++  +  A  +L EME+  + PD  T++ +I   ++   I +  E +      G + 
Sbjct: 637 SLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGNLP 696

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYE 241
             V            + +K   VV          S V  S  +  L + G+  DA+ ++ 
Sbjct: 697 DQVL-----------QLDKNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFG 745

Query: 242 EIKEAGCNLEPRAVIALIEHL 262
           E K+ G  ++    I L++ L
Sbjct: 746 ESKQKGITVDKSTYINLMDGL 766



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 46/247 (18%), Positives = 111/247 (44%), Gaps = 13/247 (5%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           PS   +++ + A  +S + +   +I+  +    L+PN  T  ++++  V+   + S++S+
Sbjct: 133 PSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVR---YPSSHSV 189

Query: 104 ------LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYL 157
                  +D  ++ ++P  + +N ++ GY  +   + A+  L  M + N  PD+ T++ +
Sbjct: 190 SFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTI 249

Query: 158 IHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPV 213
           +     +    D       +KS G    +  +  L+  Y   G  ++A  V+ L  +  +
Sbjct: 250 LDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNL 309

Query: 214 KSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQ 273
                  + L++ L + GR  +A  + +E++      +  +   LI       +++   +
Sbjct: 310 LPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFK 369

Query: 274 LLEEVHD 280
           LLEE+ +
Sbjct: 370 LLEEMSE 376


>gi|299471526|emb|CBN80012.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 732

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 88/422 (20%), Positives = 174/422 (41%), Gaps = 21/422 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           ALDV+++M +  + P ++  +S + AC  + ++     +   +      P+  T+ S I+
Sbjct: 170 ALDVLDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLASMAARGTPPDVLTYSSAIA 229

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              K+  +  A  LL  +K   + P   +Y+A ++   +    + A+ +LKEM    + P
Sbjct: 230 ACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEMPAVGLAP 289

Query: 150 DSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D  T+S +I  C+     E   +   ++ + G       +  +I A    G++E+A  ++
Sbjct: 290 DVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWEEAVALL 349

Query: 207 LD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
            +  E  V       S+ +SA A  G+  +A+ +  E+   G      +   +I      
Sbjct: 350 REMQENGVAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISACAKR 409

Query: 266 GELNRLIQLLEEVH----DPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMA 321
           G     I LL+E+      PD  +      I  C +  +   A  LL+++        + 
Sbjct: 410 GRWREAIDLLQEMQAHGVPPD--VINYSAAIDACAQASRWEQALWLLREMPATGLTPNV- 466

Query: 322 MEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAH 381
           + Y+ +   C          +I ++LL+ +    GL P       ++ +C   R  + A 
Sbjct: 467 ISYNSAIDACAKTGRS----KIAVELLREMPAH-GLAPDVITYSAVIASCAMGRQWEEAL 521

Query: 382 LIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK-----DDPHVRFVIQAC 436
            +++E +  G+  +V+S      A    G  + A  +L +MP      D    R  I AC
Sbjct: 522 DLFREMQRQGITPDVVSCNTAINACAQGGWWEEALDVLGEMPTMGLVPDAISYRTAIDAC 581

Query: 437 KQ 438
            +
Sbjct: 582 AK 583



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 137/348 (39%), Gaps = 50/348 (14%)

Query: 116 ASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK 175
           A++  A   G +RK     AL VL  M++  VKPDSQ +S  I  C N     +  E L 
Sbjct: 156 ATLREAKQYGDWRK-----ALDVLDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLA 210

Query: 176 SAGGQITKYVFMALINAYTTCGEFEKARQVV-----LDAEIPVKSRSEVKSALVSALASH 230
           S   + T    +   +A   C +  + ++ V     +  +  VK    V SA +SA    
Sbjct: 211 SMAARGTPPDVLTYSSAIAACAKVSRWKEAVGLLRSMKGQ-GVKPNVIVYSAAISACRKG 269

Query: 231 GRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC 288
           G+   A+ + +E+   G  L P  +    +I+     G+     +LL E+       +  
Sbjct: 270 GQWETAVDLLKEMPAVG--LAPDVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANII 327

Query: 289 CRLIL--HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQ-------------- 332
              I+   C ++ Q   A  LL+++++     ++ + Y  +   C               
Sbjct: 328 TYSIVIGACAKWGQWEEAVALLREMQENGVAPDV-ITYSSTISACAKKGQWEEAVGLLRE 386

Query: 333 --IATTDPPDVQIG---------------LDLLQFIKDELGLPPSRKCLDFLLGACVNAR 375
             +    P  +  G               +DLLQ ++   G+PP        + AC  A 
Sbjct: 387 MPMEGVTPNAISYGIVISACAKRGRWREAIDLLQEMQAH-GVPPDVINYSAAIDACAQAS 445

Query: 376 DLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMP 423
             ++A  + +E    GL  NV+SY     A   +G  K A +LL +MP
Sbjct: 446 RWEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIAVELLREMP 493



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 80/432 (18%), Positives = 156/432 (36%), Gaps = 61/432 (14%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           + + P   +Y  +I       +   A  ++ +M    +V +  T + ++ AC +  ++  
Sbjct: 285 VGLAPDVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWEE 344

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
              +   +  + + P+  T+ S IS   K   ++ A  LL ++    + P A  Y  +++
Sbjct: 345 AVALLREMQENGVAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVIS 404

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQI 181
              ++   + A+ +L+EM+   V PD   +S  I  C   S  E  +    ++ + G   
Sbjct: 405 ACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWLLREMPATGLTP 464

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
               + + I+A    G                  RS++   L+  + +HG   D I    
Sbjct: 465 NVISYNSAIDACAKTG------------------RSKIAVELLREMPAHGLAPDVITYSA 506

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQL 301
            I       +    + L   +  +G    ++               C   I  C +    
Sbjct: 507 VIASCAMGRQWEEALDLFREMQRQGITPDVVS--------------CNTAINACAQGGWW 552

Query: 302 SSATDLLKQLKD----------KFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFI 351
             A D+L ++            +   D  A    + EI               +DLL+ +
Sbjct: 553 EEALDVLGEMPTMGLVPDAISYRTAIDACAKGDRWKEI---------------IDLLREM 597

Query: 352 KDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGN 411
              +GL P      F + AC      K A ++ ++    GL  +V++Y     A    G 
Sbjct: 598 S-TVGLTPDAISYRFAMSACSVDGLWKEALVLLRDMLAVGLSPDVVTYNSAINACAKGGR 656

Query: 412 RKSASKLLSKMP 423
            K A+ LL +MP
Sbjct: 657 WKEATVLLRQMP 668



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 83/429 (19%), Positives = 167/429 (38%), Gaps = 30/429 (6%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y   I     + +   A+ ++  M    + P+    ++ + AC +  ++     +
Sbjct: 219 PDVLTYSSAIAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDL 278

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    L P+  T+ ++I    K   ++ A+ LL ++    ++     Y+ ++    +
Sbjct: 279 LKEMPAVGLAPDVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAK 338

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYV 185
               + A+ +L+EM++  V PD  T+S  I  C+ +   E+ +    ++   G       
Sbjct: 339 WGQWEEAVALLREMQENGVAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAIS 398

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIK 244
           +  +I+A    G + +A  ++ + +        +  SA + A A   R   A+ +  E+ 
Sbjct: 399 YGIVISACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWLLREMP 458

Query: 245 EAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEV--HD--PDYWMDGCCRLILHCVRF 298
             G  L P  +   + I+     G     ++LL E+  H   PD  +     +I  C   
Sbjct: 459 ATG--LTPNVISYNSAIDACAKTGRSKIAVELLREMPAHGLAPD--VITYSAVIASCAMG 514

Query: 299 KQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIG-----LDLLQFIKD 353
           +Q   A DL ++++ +    ++        + C  A       Q G     LD+L  +  
Sbjct: 515 RQWEEALDLFREMQRQGITPDV--------VSCNTAIN--ACAQGGWWEEALDVLGEMP- 563

Query: 354 ELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRK 413
            +GL P        + AC      K    + +E    GL  + +SY +   A    G  K
Sbjct: 564 TMGLVPDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYRFAMSACSVDGLWK 623

Query: 414 SASKLLSKM 422
            A  LL  M
Sbjct: 624 EALVLLRDM 632



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/210 (17%), Positives = 92/210 (43%), Gaps = 5/210 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           +TP+  SY   I       +  +A++++ +M    L P   T ++++ +C    ++    
Sbjct: 462 LTPNVISYNSAIDACAKTGRSKIAVELLREMPAHGLAPDVITYSAVIASCAMGRQWEEAL 521

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +    + P+  +  + I+   +   ++ A  +L ++  M L+P A  Y   +   
Sbjct: 522 DLFREMQRQGITPDVVSCNTAINACAQGGWWEEALDVLGEMPTMGLVPDAISYRTAIDAC 581

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITK 183
            +    +  + +L+EM    + PD+ ++ + +  CS +   ++ +     + + G     
Sbjct: 582 AKGDRWKEIIDLLREMSTVGLTPDAISYRFAMSACSVDGLWKEALVLLRDMLAVGLSPDV 641

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPV 213
             + + INA    G +++A   VL  ++P 
Sbjct: 642 VTYNSAINACAKGGRWKEA--TVLLRQMPT 669


>gi|413952776|gb|AFW85425.1| chloroplast RNA splicing4 [Zea mays]
          Length = 1435

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/292 (20%), Positives = 134/292 (45%), Gaps = 7/292 (2%)

Query: 1   MHAKLEITPSSASYKKLITY--SCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEE 58
           MH +  I P   S+  LI        L   VALD++ ++ Q  L P   T N+++ AC +
Sbjct: 247 MHDR-GIDPDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQ 305

Query: 59  SYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM 118
           S        ++  +     +P+  T+ +M+S++ +    + A  L  +L E   MP A  
Sbjct: 306 SSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRELVEKGFMPDAIT 365

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLK 175
           YN+++  + ++ +V       +++ +A  K +  T++ +IH        +  +  Y++++
Sbjct: 366 YNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMR 425

Query: 176 SAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTS 234
           + G       +  +I++        +A +V+ D  +  +K      SAL+ A A  GR +
Sbjct: 426 AMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSALICAYAKGGRRA 485

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
           DA   ++ +  +G   +  A + +++     G+  +++ L  ++ + +Y  D
Sbjct: 486 DAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKMLCLYRKMMNDNYRPD 537



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/295 (20%), Positives = 131/295 (44%), Gaps = 50/295 (16%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           ALD  E + +    P++  +  +L     + + ++   ++            + F +M+ 
Sbjct: 173 ALDAFEWLARSS-APASRAVAVVLGVLGRARQDSIAEEVFLRFAGEG--ATVQVFNAMMG 229

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQG--ALMVLKEMEQANV 147
           +  +   FD A  LLD + +  + P    +N ++    +   +    AL +L E+ Q+ +
Sbjct: 230 VYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSGL 289

Query: 148 KPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA-- 202
           +PD  T++ LI  C   SN ED +  +E + ++  +   + + A+++ +  CG+ E+A  
Sbjct: 290 RPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAER 349

Query: 203 --RQVVLDAEIP----------------------------VKS---RSEVK-SALVSALA 228
             R++V    +P                            VK+   ++E+  + ++    
Sbjct: 350 LFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYG 409

Query: 229 SHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQ---LLEEVHD 280
             GR   A+ +Y+E++  GC   P AV   +  ++S G++NR+ +   +LE++ D
Sbjct: 410 KMGRLDLAVGLYDEMRAMGCT--PDAVTYTV-MIDSLGKMNRIAEAGKVLEDMTD 461



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/201 (17%), Positives = 87/201 (43%), Gaps = 3/201 (1%)

Query: 9    PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
            P+   Y+ +I+  C   +      ++ +M      P    +N++L+    +  F+   ++
Sbjct: 883  PNMHLYRSMISLLCHHNRFRDVELMIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTTQV 942

Query: 69   YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
            Y  I    L+P+ +T+ ++I +  +    +  ++LL+++ +  L P    Y +++A   +
Sbjct: 943  YRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAK 1002

Query: 129  KKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITKYV 185
             +  + A  + +EM   + + +   +  ++    N  N          +K  G + T   
Sbjct: 1003 AELREQADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIAT 1062

Query: 186  FMALINAYTTCGEFEKARQVV 206
               L+ +Y T G+  +A  V+
Sbjct: 1063 MHILMTSYGTAGQPREAENVL 1083



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 77/390 (19%), Positives = 155/390 (39%), Gaps = 53/390 (13%)

Query: 80   NSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVL 139
            N   +  +I+  ++ + F  A  +  D++ + +  + S+Y +I++ Y +    + A  ++
Sbjct: 674  NCNLYEYLITCLIEAEFFSEACQVFCDMQFIGIEASKSIYESIISTYCKLGFPETAHRLM 733

Query: 140  KEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQ-------LKSAGGQITKYVFMALINA 192
             +  Q+ +  +  +   +I     +   IK ++Q       L+ A G I + ++ ALI+A
Sbjct: 734  DDALQSGIPLNILSCRVIIIEAYGK---IKLWQQAEILVKGLRQASG-IDRRIWNALIHA 789

Query: 193  YTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEIKEAGCNL 250
            Y   G +EKAR  V D  I       V S   ++ AL   GR  +  +V EE+++    +
Sbjct: 790  YAESGLYEKAR-AVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVEELQDMNFKI 848

Query: 251  EPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD-----GCCRLILHCVRFKQLSSAT 305
                V+ L++     G++  ++++   +    Y  +         L+ H  RF+ +    
Sbjct: 849  SKSTVLLLLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRDVEL-- 906

Query: 306  DLLKQLKDKFKDDEMAMEYHFSEIFCQIATTD--------------PPDVQI-------- 343
             ++ +++      ++A+      ++      D               PD           
Sbjct: 907  -MIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMY 965

Query: 344  --------GLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYN 395
                    G  LL  +    GL P  +    LL A   A   ++A  I++E  +     N
Sbjct: 966  CRSFRPEEGFTLLNEMGKR-GLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLN 1024

Query: 396  VLSYLWMYKAFLASGNRKSASKLLSKMPKD 425
               Y  M K +  +GN   A  LL+ M +D
Sbjct: 1025 RSIYHMMMKIYRNAGNHSKAENLLAVMKED 1054



 Score = 46.2 bits (108), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 62/324 (19%), Positives = 127/324 (39%), Gaps = 45/324 (13%)

Query: 33   VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL-- 90
            VVE++       S  T+  +L A  ++ +   V +IY  +      PN   +RSMISL  
Sbjct: 837  VVEELQDMNFKISKSTVLLLLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLC 896

Query: 91   ------NVKI---------------------------KDFDSAYSLLDDLKEMNLMPTAS 117
                  +V++                            +FD    +   + E  L P   
Sbjct: 897  HHNRFRDVELMIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDED 956

Query: 118  MYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQL 174
             YN ++  Y R    +    +L EM +  + P  Q++  L+   +     E   + +E++
Sbjct: 957  TYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEM 1016

Query: 175  KSAGGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRT 233
            +S   Q+ + ++  ++  Y   G   KA  ++ +  E  ++        L+++  + G+ 
Sbjct: 1017 RSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQP 1076

Query: 234  SDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN----RLIQLLEEVHDPDYWMDGCC 289
             +A  V   +K +   +       + +     G+ N    +L+++  +  +PD+ +  C 
Sbjct: 1077 REAENVLNNLKSSSLEVSTLPYSTVFDAYLKNGDYNHGTTKLLEMKRDGVEPDHQVWTC- 1135

Query: 290  RLILHCVRFKQLSSATDLLKQLKD 313
              I      +Q + A  LLK L+D
Sbjct: 1136 -FIRAASLCEQTADAILLLKSLQD 1158



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 48/242 (19%), Positives = 99/242 (40%), Gaps = 18/242 (7%)

Query: 1    MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
            + A LE  P   +Y  LI   C   +      ++ +M +  L P  ++  S+L A  ++ 
Sbjct: 947  LEAGLE--PDEDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAE 1004

Query: 61   EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
                  +I+  +   + + N   +  M+ +     +   A +LL  +KE  + PT +  +
Sbjct: 1005 LREQADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMH 1064

Query: 121  AIMAGYFRKKDVQGALMVLKEMEQANVK----PDSQTFSYLIHNCSNEEDIIKYYEQLKS 176
             +M  Y      + A  VL  ++ ++++    P S  F   + N        K  E +K 
Sbjct: 1065 ILMTSYGTAGQPREAENVLNNLKSSSLEVSTLPYSTVFDAYLKNGDYNHGTTKLLE-MKR 1123

Query: 177  AGGQITKYVFMALINAYTTCGEFEKARQVVL--------DAEIPVKSRSEVKSALVSALA 228
             G +    V+   I A + C   E+    +L          ++P++  +E   +L+S +A
Sbjct: 1124 DGVEPDHQVWTCFIRAASLC---EQTADAILLLKSLQDCGFDLPIRLLTERTPSLLSEIA 1180

Query: 229  SH 230
            ++
Sbjct: 1181 NY 1182


>gi|224083888|ref|XP_002307160.1| predicted protein [Populus trichocarpa]
 gi|222856609|gb|EEE94156.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 120/260 (46%), Gaps = 26/260 (10%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
           N++ N +TF S+I   VK    D A  L D +K+    P  S+Y+ I+ G    KDV+ A
Sbjct: 165 NVRLNKKTFCSLIYGFVKESRVDKALHLFDKMKKSGFTPDISLYDVIIGGLCVNKDVKKA 224

Query: 136 LMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQL-KSAGGQITKYVFMALINAYT 194
           L +  EM+   ++PD +  + LI + S EE++  ++E++ +    + +  ++ +++N+  
Sbjct: 225 LCLYSEMKGFKIQPDVKIVTKLISSFSKEEELTCFFEEMHEDMDPKASTLLYNSVLNSLV 284

Query: 195 TCGEFEKARQV---------VLDAEIP--------VKSRSEVKSALVSALASHGRTSDAI 237
             G   KA  +         + D EI         V   S   S +++ L   G    A+
Sbjct: 285 DNGSVHKAYHLLQAITIGNCIGDGEIGKLFRGKAMVPPNSTTFSIVINGLIKTGDLDLAV 344

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDYWMDGCCRLIL 293
            ++ ++   GC  +      LI+ L +   L     LL+E+     +P  + + C   I 
Sbjct: 345 GLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQESCGLLQEMEESGIEPTSFTNNC---IF 401

Query: 294 HCV-RFKQLSSATDLLKQLK 312
            C+ R   +S A  LLK+++
Sbjct: 402 GCLCRRHDISGALHLLKKMR 421



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/199 (20%), Positives = 94/199 (47%), Gaps = 7/199 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I  S++  K+L  +  ++      +D+ E+  Q ++V  +  ++ ++    +  E +   
Sbjct: 429 IKHSTSLVKELCKHGKEVEACKFLVDMAEEGFQPDIVAYSACLDGLI----KIQEVDQAL 484

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++  IC     P+   +  +I    K +    A +LL +++E  L+P+A  YN ++ G 
Sbjct: 485 KLFQDICAQGYCPDVIAYNILIKGLCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGL 544

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITK 183
            +   ++ A++ L  M +   +P+  T+S LI+   N    +D +  + ++   G   + 
Sbjct: 545 CKTDHLEEAMLFLSMMIEKEREPNVITYSTLINGLCNAGRPDDALVLWNEMGRKGCTPSS 604

Query: 184 YVFMALINAYTTCGEFEKA 202
             +MA I+  + CG   +A
Sbjct: 605 IAYMAFIHGLSNCGRPNEA 623



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/284 (20%), Positives = 119/284 (41%), Gaps = 37/284 (13%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQM-VQGELVPSTETINSILHACEESYEFNLV 65
           I P+S +   +    C    +  AL ++++M + G +     + + +   C+   E    
Sbjct: 390 IEPTSFTNNCIFGCLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCKHGKEVEAC 449

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           + +  M      +P+   + + +   +KI++ D A  L  D+      P    YN ++ G
Sbjct: 450 KFLVDM-AEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYCPDVIAYNILIKG 508

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYV 185
             + + +  A  +L EME+  + P + T++ LI       D +   + L+ A       +
Sbjct: 509 LCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTLI-------DGLCKTDHLEEA------ML 555

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
           F++++         EK R+                S L++ L + GR  DA++++ E+  
Sbjct: 556 FLSMM--------IEKERE----------PNVITYSTLINGLCNAGRPDDALVLWNEMGR 597

Query: 246 AGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYWM 285
            GC     A +A I  L++ G  N  +  L E+ +    PD ++
Sbjct: 598 KGCTPSSIAYMAFIHGLSNCGRPNEALVYLREMEEREMKPDTYV 641


>gi|15983487|gb|AAL11611.1|AF424618_1 AT5g04810/MUK11_13 [Arabidopsis thaliana]
          Length = 950

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/383 (18%), Positives = 161/383 (42%), Gaps = 47/383 (12%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
            L V +++ +    P+  T   +++   +  + +    +  ++    +K N +T+  MI+
Sbjct: 466 GLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMIN 525

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
             VK+KD+ +A+++ +D+ +  + P   +YN I++ +    ++  A+  +KEM++   +P
Sbjct: 526 GFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRP 585

Query: 150 DSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
            ++TF  +IH  +   D+   ++ ++ ++  G   T + F  LIN      + EKA +++
Sbjct: 586 TTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEIL 645

Query: 207 LDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
            +  +  V +     + ++   AS G T  A   +  ++  G +++     AL++     
Sbjct: 646 DEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKS 705

Query: 266 GELNRLIQLLEEVHDPDYWMDGCCRLIL--HCVRFKQLSSATDLLKQLKDKFKDDEMAME 323
           G +   + + +E+   +   +     IL     R   +  A DL++Q+K +         
Sbjct: 706 GRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKE--------- 756

Query: 324 YHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLI 383
                                           G+ P        + AC  A D+ RA   
Sbjct: 757 --------------------------------GVKPDIHTYTSFISACSKAGDMNRATQT 784

Query: 384 WKEYENAGLPYNVLSYLWMYKAF 406
            +E E  G+  N+ +Y  + K +
Sbjct: 785 IEEMEALGVKPNIKTYTTLIKGW 807



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 110/280 (39%), Gaps = 39/280 (13%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P    Y  +I+  C +  +  A+  V++M +    P+T T   I+H   +S +     
Sbjct: 548 MKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSL 607

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++ M+      P   TF  +I+  V+ +  + A  +LD++    +      Y  IM GY
Sbjct: 608 EVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGY 667

Query: 127 FRKKD-----------------------------------VQGALMVLKEMEQANVKPDS 151
               D                                   +Q AL V KEM   N+  +S
Sbjct: 668 ASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNS 727

Query: 152 QTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
             ++ LI   +   D+ +     +Q+K  G +   + + + I+A +  G+  +A Q + +
Sbjct: 728 FVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEE 787

Query: 209 AE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
            E + VK   +  + L+   A       A+  YEE+K  G
Sbjct: 788 MEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMG 827



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 92/443 (20%), Positives = 180/443 (40%), Gaps = 48/443 (10%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSIL-------HACEES 59
           ITP+S  Y  LI        +  AL  V +M +  +  S  T + I+       HA    
Sbjct: 338 ITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAAD 397

Query: 60  YEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMY 119
           Y F+  +RI+  +       N+  +  +I  + +  + + A +L+ +++E  +    ++Y
Sbjct: 398 YWFDEAKRIHKTL-------NASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIY 450

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQ---LKS 176
           + +M GY    D +  L+V K +++    P   T+  LI+  +    I K  E    +K 
Sbjct: 451 HTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKE 510

Query: 177 AGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSD 235
            G +     +  +IN +    ++  A  V  D  +  +K    + + ++SA    G    
Sbjct: 511 EGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDR 570

Query: 236 AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC------ 289
           AI   +E+++       R  + +I      G++ R +++ + +        GC       
Sbjct: 571 AIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRC-----GCVPTVHTF 625

Query: 290 -RLILHCVRFKQLSSATDLLKQLKDKFKDDEM------AMEYHFSEIFCQIATTDPPDVQ 342
             LI   V  +Q+  A ++L         DEM      A E+ +++I    A+    D  
Sbjct: 626 NGLINGLVEKRQMEKAVEIL---------DEMTLAGVSANEHTYTKIMQGYASVG--DTG 674

Query: 343 IGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWM 402
              +    +++E GL       + LL AC  +  ++ A  + KE     +P N   Y  +
Sbjct: 675 KAFEYFTRLQNE-GLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNIL 733

Query: 403 YKAFLASGNRKSASKLLSKMPKD 425
              +   G+   A+ L+ +M K+
Sbjct: 734 IDGWARRGDVWEAADLIQQMKKE 756



 Score = 43.5 bits (101), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 57/383 (14%), Positives = 151/383 (39%), Gaps = 41/383 (10%)

Query: 78  KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALM 137
           KP+   F  M+    +  D   A    + ++   + PT+ +Y +++  Y   +D+  AL 
Sbjct: 304 KPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALS 363

Query: 138 VLKEMEQANVKPDSQTFSYLIHNCS---NEEDIIKYYEQLKSAGGQITKYVFMALINAYT 194
            +++M++  ++    T+S ++   S   + E    ++++ K     +   ++  +I A+ 
Sbjct: 364 CVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHC 423

Query: 195 TCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPR 253
                E+A  +V +  E  + +   +   ++            ++V++ +KE  C   P 
Sbjct: 424 QTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKE--CGFTPT 481

Query: 254 AVI--ALIEHLNSEGELNRLIQLLEEVHDPD--YWMDGCCRLILHCVRFKQLSSATDLLK 309
            V    LI      G++++ +++   + +    + +     +I   V+ K  ++A  + +
Sbjct: 482 VVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFE 541

Query: 310 QLKDKFKDDEMAMEYHFSEIFCQIATTD------------------------------PP 339
            +  +    ++ +  +    FC +   D                                
Sbjct: 542 DMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSG 601

Query: 340 DVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSY 399
           D++  L++   ++   G  P+    + L+   V  R +++A  I  E   AG+  N  +Y
Sbjct: 602 DMRRSLEVFDMMR-RCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTY 660

Query: 400 LWMYKAFLASGNRKSASKLLSKM 422
             + + + + G+   A +  +++
Sbjct: 661 TKIMQGYASVGDTGKAFEYFTRL 683


>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Vitis vinifera]
          Length = 877

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 99/452 (21%), Positives = 178/452 (39%), Gaps = 42/452 (9%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  LI   C+   +  A ++  QM    + PS   +NS+L    ++  +    ++
Sbjct: 398 PNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKL 457

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +       +  N  T+  M+S   K    D A SLLD++    ++P    YN ++ G+ R
Sbjct: 458 FDEAVDCGVA-NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCR 516

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKYV 185
           K ++  A  V  +M   ++KP+  T+S LI       + E  +  ++Q+ S     T + 
Sbjct: 517 KGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFT 576

Query: 186 FMALINAYTTCGEFEKAR----QVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
           F  +IN     G+  +AR      + +  IP        +++V      G    A+ VY 
Sbjct: 577 FNTIINGLCKVGQMSEARDKLKNFLEEGFIP---SCMTYNSIVDGFIKEGNIDSALAVYR 633

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD--GCCRLILHCVRFK 299
           E+ E G +       +LI        ++  ++  +E+ +    +D      LI    + +
Sbjct: 634 EMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRR 693

Query: 300 QLSSATDLLKQLKD---------------KFKD---DEMAMEYH----FSEIFCQIAT-T 336
            + SA DL  +L +                F+D    E A+ ++       I C + T T
Sbjct: 694 DMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYT 753

Query: 337 DPPDVQIGLDLLQFIKD------ELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENA 390
              D  +    L F  D        G+ P       L+    N   L+ A  I +E +  
Sbjct: 754 TLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRK 813

Query: 391 GLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
            +  +VL Y  +   +   GN K A  L  +M
Sbjct: 814 NMTPSVLIYNTLIAGYFREGNLKEAFTLHDEM 845



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 122/266 (45%), Gaps = 4/266 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  SY  +I   C    + +A  V   M+  +L P+  T + ++    +  +     
Sbjct: 500 MVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKAL 559

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +   N+ P   TF ++I+   K+     A   L +  E   +P+   YN+I+ G+
Sbjct: 560 DLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGF 619

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-C-SNEEDI-IKYYEQLKSAGGQITK 183
            ++ ++  AL V +EM +  V P+  T++ LI+  C SN  D+ +K  ++++  G ++  
Sbjct: 620 IKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDV 679

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             + ALI+ +    + E A+ +  +  E+ +     V ++++S          A++ Y++
Sbjct: 680 TAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKK 739

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGEL 268
           +       +      LI+ L  EG L
Sbjct: 740 MINDRIPCDLGTYTTLIDGLLKEGRL 765



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 134/305 (43%), Gaps = 16/305 (5%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           L I P+  ++  +I   C + ++  A D ++  ++   +PS  T NSI+    +    + 
Sbjct: 568 LNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDS 627

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
              +Y  +C   + PN  T+ S+I+   K    D A    D+++E  L    + Y+A++ 
Sbjct: 628 ALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALID 687

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQI 181
           G+ +++D++ A  +  E+ +  + P+   ++ +I    + +N E  + +Y+++ +     
Sbjct: 688 GFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPC 747

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS-----ALVSALASHGRTSDA 236
               +  LI+     G    A  + ++    + S+  V        LV+ L + G+  +A
Sbjct: 748 DLGTYTTLIDGLLKEGRLVFASDLYME----MLSKGIVPDIITFHVLVNGLCNKGQLENA 803

Query: 237 IIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILH 294
             + EE+     N+ P  +I   LI     EG L     L +E+ D     D     IL 
Sbjct: 804 RKILEEMDRK--NMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILI 861

Query: 295 CVRFK 299
             +FK
Sbjct: 862 NGKFK 866



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 46/229 (20%), Positives = 92/229 (40%), Gaps = 10/229 (4%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           ++  A+D    M+  +++P    +N +L A         +R +Y  +    +  +  T  
Sbjct: 205 RIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKMVLRGIYGDHFTVH 264

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
            M+   +K    + A     + KE  +   A  Y+ I+    +K +    L +L+EM++ 
Sbjct: 265 VMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKER 324

Query: 146 NVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
              P   TF+ +I  C    N  + ++  E++ + G  +   V  +L+  Y   G  + A
Sbjct: 325 GWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSA 384

Query: 203 ----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
                ++  D   P K      S L+    + G    A  +Y ++K  G
Sbjct: 385 LNLFNKITEDGLFPNKV---TYSVLIEGCCNSGNIEKASELYTQMKLNG 430



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 92/203 (45%), Gaps = 10/203 (4%)

Query: 222 ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDP 281
            +V A    GR  +A   + E KE G  L+  A   +I+ +  +   N  ++LLEE+ + 
Sbjct: 265 VMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKER 324

Query: 282 DYWMDG---CCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDP 338
             W+        +I+ CV    +  A  L +++ +  K   + +     + +C     D 
Sbjct: 325 G-WVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDS 383

Query: 339 PDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLS 398
                 L+L   I ++ GL P++     L+  C N+ ++++A  ++ + +  G+P +V +
Sbjct: 384 -----ALNLFNKITED-GLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFN 437

Query: 399 YLWMYKAFLASGNRKSASKLLSK 421
              + + +L +   + ASKL  +
Sbjct: 438 VNSLLRGYLKAPLWEEASKLFDE 460



 Score = 45.4 bits (106), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 6/135 (4%)

Query: 291 LILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQF 350
           ++  C++  ++  A +  ++ K++     + ++     I  Q A    P+  +GL+LL+ 
Sbjct: 266 MVRACLKEGRVEEAEEYFRETKER----GVKLDAGAYSIIIQ-AVCKKPNSNLGLELLEE 320

Query: 351 IKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASG 410
           +K E G  PS      ++ ACV   ++  A  + +E  N G P N++    + K + A G
Sbjct: 321 MK-ERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQG 379

Query: 411 NRKSASKLLSKMPKD 425
           N  SA  L +K+ +D
Sbjct: 380 NLDSALNLFNKITED 394



 Score = 44.7 bits (104), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 102/240 (42%), Gaps = 38/240 (15%)

Query: 11  SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYP 70
           + +Y  +I   C     ++ L+++E+M +   VPS  T  S++ AC    + N+V  +  
Sbjct: 295 AGAYSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVA--QGNMVEAL-- 350

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
                                 ++K+      +++  K MNL+   S+    M GY  + 
Sbjct: 351 ----------------------RLKE-----EMINCGKPMNLVVATSL----MKGYCAQG 379

Query: 131 DVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFM 187
           ++  AL +  ++ +  + P+  T+S LI  C N  +I K    Y Q+K  G   + +   
Sbjct: 380 NLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVN 439

Query: 188 ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           +L+  Y     +E+A ++  +A     +     + ++S L   G+  +A  + + +   G
Sbjct: 440 SLLRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQG 499


>gi|29294052|gb|AAO73889.1| protein kinase family [Arabidopsis thaliana]
          Length = 854

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 109/242 (45%), Gaps = 5/242 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEE-SYEFNLV 65
           + P+  +   L+   C+  K+  A ++V +M    + P   T N++  A           
Sbjct: 479 LQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAE 538

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             I P + H+ +KPN  T  ++++   +    + A      +KE+ + P   ++N+++ G
Sbjct: 539 DMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKG 598

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQIT 182
           +    D+ G   V+  ME+  VKPD  TFS L++  S+  D+ +    Y  +   G    
Sbjct: 599 FLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPD 658

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
            + F  L   Y   GE EKA Q++    +  V+    + + ++S   S G    A+ VY+
Sbjct: 659 IHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYK 718

Query: 242 EI 243
           ++
Sbjct: 719 KM 720



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 128/312 (41%), Gaps = 41/312 (13%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           PS  +Y  L+T        H  L ++ ++ +  L P T   N+I++A  ES   +   +I
Sbjct: 375 PSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKI 434

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLD-DLKEMNLMPTASMYNAIMAGYF 127
           +  +     KP + TF ++I    KI   + +  LLD  L++  L P     N ++  + 
Sbjct: 435 FEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWC 494

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIH-------NCSNEEDII------------ 168
            ++ ++ A  ++ +M+   VKPD  TF+ L          C+ E+ II            
Sbjct: 495 NQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNV 554

Query: 169 --------------------KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV-L 207
                               +++ ++K  G     +VF +LI  +    + +   +VV L
Sbjct: 555 RTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDL 614

Query: 208 DAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
             E  VK      S L++A +S G       +Y ++ E G + +  A   L +     GE
Sbjct: 615 MEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGE 674

Query: 268 LNRLIQLLEEVH 279
             +  Q+L ++ 
Sbjct: 675 PEKAEQILNQMR 686



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 63/338 (18%), Positives = 146/338 (43%), Gaps = 24/338 (7%)

Query: 100 AYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159
           A+S+ + L E    P+   Y  ++    R+K     L ++ ++E+  +KPD+  F+ +I+
Sbjct: 361 AHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIIN 420

Query: 160 NCS---NEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV---LDAEIPV 213
             S   N +  +K +E++K +G + T   F  LI  Y   G+ E++ +++   L  E+ +
Sbjct: 421 ASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEM-L 479

Query: 214 KSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC-------NLEPRAVIALIEHLNSEG 266
           +      + LV A  +  +  +A  +  +++  G        N   +A   +     +E 
Sbjct: 480 QPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAED 539

Query: 267 ELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHF 326
            +  + ++L     P+  +  C  ++       ++  A     ++K+      + +    
Sbjct: 540 MI--IPRMLHNKVKPN--VRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSL 595

Query: 327 SEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKE 386
            + F  I   D      G+  +  + +E G+ P       L+ A  +  D+KR   I+ +
Sbjct: 596 IKGFLNINDMD------GVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTD 649

Query: 387 YENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424
               G+  ++ ++  + K +  +G  + A ++L++M K
Sbjct: 650 MLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRK 687



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 74/400 (18%), Positives = 151/400 (37%), Gaps = 88/400 (22%)

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           I+  +     KP+  T+ ++++   + K F S  SL+  +++  L P   ++NAI+    
Sbjct: 364 IFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASS 423

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLI----------------------------- 158
              ++  A+ + ++M+++  KP + TF+ LI                             
Sbjct: 424 ESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPND 483

Query: 159 HNCS-------NEEDIIKYYE---QLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
             C+       N+  I + +    +++S G +     F  L  AY   G    A  +++ 
Sbjct: 484 RTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIP 543

Query: 209 AEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE---HLN 263
             +  K +  V++   +V+     G+  +A+  +  +KE G +       +LI+   ++N
Sbjct: 544 RMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNIN 603

Query: 264 SEGELNRLIQLLEEVH-DPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAM 322
               +  ++ L+EE    PD             V F  L +A   +  +K          
Sbjct: 604 DMDGVGEVVDLMEEFGVKPD------------VVTFSTLMNAWSSVGDMKR--------- 642

Query: 323 EYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHL 382
                   C+         +I  D+L     E G+ P       L      A + ++A  
Sbjct: 643 --------CE---------EIYTDML-----EGGIDPDIHAFSILAKGYARAGEPEKAEQ 680

Query: 383 IWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           I  +    G+  NV+ Y  +   + ++G  K A ++  KM
Sbjct: 681 ILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKM 720



 Score = 45.1 bits (105), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 30/161 (18%), Positives = 72/161 (44%), Gaps = 1/161 (0%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++ P+  +   ++   C+  K+  AL    +M +  + P+    NS++       + + V
Sbjct: 549 KVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGV 608

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +  ++    +KP+  TF ++++    + D      +  D+ E  + P    ++ +  G
Sbjct: 609 GEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKG 668

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE 165
           Y R  + + A  +L +M +  V+P+   ++ +I   CS  E
Sbjct: 669 YARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGE 709


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 130/294 (44%), Gaps = 11/294 (3%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  LI   C+  ++  A  + ++M   +L+P   + N++++ C E  + +   ++
Sbjct: 311 PDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKL 370

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    +KPN+ T   M+    K    D A + +  ++E    P    YN ++ GY +
Sbjct: 371 LEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCK 430

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA---GGQITKYV 185
             ++  A   + EM + N+K DS T + ++     E+ + + Y+ L SA   G  I +  
Sbjct: 431 AGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVS 490

Query: 186 FMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +  LI  Y   G  ++A ++  +  E  +   +   + ++  L   G+T  AI    E+ 
Sbjct: 491 YGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELL 550

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQ----LLEEVHDPDYWMDGCCRLILH 294
           E+G   +      ++     EG++ +  Q    ++E    PD +    C ++L 
Sbjct: 551 ESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVF---TCNILLR 601



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/321 (20%), Positives = 128/321 (39%), Gaps = 6/321 (1%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           KL I P+  ++  +I   C   K   A++ +  M +    P   T N+IL A  +     
Sbjct: 201 KLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLG 260

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             R +   +    L PN  T+  ++    K+     A ++++ + + NL+P    YN ++
Sbjct: 261 DARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLI 320

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQ 180
            G   +  ++ A  +  EME   + PD  +++ LI+ C   S   +  K  E++   G +
Sbjct: 321 NGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVK 380

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIV 239
                   ++  Y   G+ + A   +   E    S   V  + L++     G   +A   
Sbjct: 381 PNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRT 440

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFK 299
            +E+      ++   +  ++  L  E +L    +LL       Y++D      L    FK
Sbjct: 441 MDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFK 500

Query: 300 QLSSATDLLKQLKDKFKDDEM 320
                 D   +L D+ K+ E+
Sbjct: 501 D--GNVDRALKLWDEMKEKEI 519



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/280 (21%), Positives = 113/280 (40%), Gaps = 39/280 (13%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHAC------EESY 60
            +P   +Y  LI   C    +  A   +++M +  +   + T+N+IL         EE+Y
Sbjct: 414 FSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAY 473

Query: 61  EF---------------------------NLVR--RIYPMICHHNLKPNSETFRSMISLN 91
           +                            N+ R  +++  +    + P++ T+  +I   
Sbjct: 474 KLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGL 533

Query: 92  VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151
            +    + A S L++L E  L+P  + YN I+ GY R+ DV+ A     +M + + KPD 
Sbjct: 534 CQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDV 593

Query: 152 QTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
            T + L+     E   E  +K +    S G  I    +  LI +    G  + A  ++ +
Sbjct: 594 FTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSE 653

Query: 209 A-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
             E  +       +A+++AL   GR  +A     ++ E G
Sbjct: 654 MEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKG 693



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 53/261 (20%), Positives = 104/261 (39%), Gaps = 16/261 (6%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNL 64
           EI PS+ +Y  +I   C   K   A+  + ++++  L+P   T N+ILH  C E  +   
Sbjct: 518 EIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREG-DVEK 576

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
             + +  +  ++ KP+  T   ++         + A  L +             YN ++ 
Sbjct: 577 AFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLIT 636

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA--GGQIT 182
              ++  +  A  +L EME+  + PD  T++ +I   ++   I +  E +      G + 
Sbjct: 637 SLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGXLP 696

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYE 241
             V            + +    VV          S V  S  +  L + G+  DA+ ++ 
Sbjct: 697 XQVL-----------QLDXNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFG 745

Query: 242 EIKEAGCNLEPRAVIALIEHL 262
           E K+ G  ++    I L++ L
Sbjct: 746 ESKQKGITVDKSTYINLMDGL 766



 Score = 39.7 bits (91), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 40/211 (18%), Positives = 97/211 (45%), Gaps = 13/211 (6%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           PS   +++ + A  +S + +   +I+  +    L+PN  T  ++++  V+   + S++S+
Sbjct: 133 PSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVR---YPSSHSV 189

Query: 104 ------LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYL 157
                  +D  ++ ++P  + +N ++ GY  +   + A+  L  M + N  PD+ T++ +
Sbjct: 190 SFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTI 249

Query: 158 IHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPV 213
           +     +    D       +KS G    +  +  L+  Y   G  ++A  V+ L  +  +
Sbjct: 250 LDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNL 309

Query: 214 KSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
                  + L++ L + GR  +A  + +E++
Sbjct: 310 LPDVWTYNMLINGLCNEGRIEEAFKLRDEME 340


>gi|115458614|ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group]
 gi|38344550|emb|CAD40961.2| OSJNBa0027P08.18 [Oryza sativa Japonica Group]
 gi|113564478|dbj|BAF14821.1| Os04g0446100 [Oryza sativa Japonica Group]
          Length = 583

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 126/281 (44%), Gaps = 14/281 (4%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTET----INSILHACEESYEFN 63
           +P   S+  +I   C + +V  AL++VE+M +    P T T    ++ +    E S    
Sbjct: 248 SPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHE 307

Query: 64  LVRRIY-PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           ++RR+    +C     PN  TF S+IS   K    + A ++ +D+    +MP    YN +
Sbjct: 308 VLRRLQRDGVC----MPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVL 363

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGG 179
           + GY +  D+  A+ V ++M +    PD  TFS LI     C   +D ++ +  +     
Sbjct: 364 INGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRI 423

Query: 180 QITKYVFMALINAYTTCGEFEKARQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDAI 237
           Q   Y F  +I++       ++A  ++  L+    +  ++ + + ++  L   G+  +A 
Sbjct: 424 QPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEAN 483

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           ++ + ++E GC  +      LI     +  ++  I    E+
Sbjct: 484 LIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEM 524



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/270 (20%), Positives = 120/270 (44%), Gaps = 6/270 (2%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQ-GELVPSTETINSILHACEESYEFNLVR 66
           +P + ++  L+   C   +V    +V+ ++ + G  +P+  T  S++    ++ +     
Sbjct: 283 SPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAM 342

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +Y  +    + PN+ T+  +I+   K+ D  SA  +   +  +   P    +++++ GY
Sbjct: 343 AVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGY 402

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITK 183
            R   +  AL +  +M Q  ++P+  TFS +IH+   +   ++ I    +L        +
Sbjct: 403 CRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQ 462

Query: 184 -YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
            +++  +I+    CG+ ++A  +     E   +      + L+       R S+AI+ + 
Sbjct: 463 AFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFH 522

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRL 271
           E+ EAGC+ +   V   I  L   G  N +
Sbjct: 523 EMVEAGCSPDSITVNCFISCLLKAGMPNEV 552



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 85/462 (18%), Positives = 183/462 (39%), Gaps = 36/462 (7%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQG-ELVPSTETINSILHACEESYE 61
           + L ITPS+ S +++I   C   +   AL + +QM       P    ++ ++ +C  +  
Sbjct: 136 SPLSITPSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANL 195

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDD-LKEMNLMPTASMYN 120
            +    +         +  +  +  ++S  +         +L +  +++    P    +N
Sbjct: 196 LDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFN 255

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSA 177
            ++ G  R   VQ AL +++ M +    PD+ T + L+       ++ + +E   +L+  
Sbjct: 256 VVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRD 315

Query: 178 GGQITKYV-FMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSD 235
           G  +   V F ++I+ Y   G+ E A  V  D     +   +   + L++     G    
Sbjct: 316 GVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGS 375

Query: 236 AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDYWMDGCCRL 291
           A+ VY+++    C  +     +LI+     G+L+  +++  ++      P+ +      +
Sbjct: 376 AVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFS---I 432

Query: 292 ILHCVRFKQLSS-ATDLLKQLKDKFKDDEMAMEYH-FSEIFCQIATTDPPDVQIGLDLLQ 349
           I+H +  +  S  A  LL +L  +      A  Y+   ++ C+    D        +L++
Sbjct: 433 IIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEA------NLIR 486

Query: 350 FIKDELGLPPSRKCLDFL-LGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLA 408
              +E G  P +     L +G C+ +R +  A + + E   AG   + ++        L 
Sbjct: 487 KGMEEKGCRPDKYTYTILIIGYCMKSR-ISEAIMFFHEMVEAGCSPDSITVNCFISCLLK 545

Query: 409 SGNRKSASKLLSKMPKDDPHV-RFVIQACKQTYTIPSLQKER 449
           +G           MP +  HV R           +PS  ++R
Sbjct: 546 AG-----------MPNEVDHVMRLASGGASSIQEVPSPVRQR 576


>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/403 (21%), Positives = 168/403 (41%), Gaps = 18/403 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY-PMICHHNLKPNSETFRSMI 88
           A+ +  Q+   +  P+    NS++       E+  V  +Y  M       P++ T+ ++I
Sbjct: 174 AVAIFYQIKARKCQPTAHAYNSMIIMLMHEGEYEKVHELYNEMSNEGQCFPDTVTYSALI 233

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
           S   K+   DSA  LL+++K+  + PTA +Y  +MA  F+  +V GAL + +EM     +
Sbjct: 234 SAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQYCR 293

Query: 149 PDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           PD  T++ LI         ++   ++ +++  G +    +   +IN     G  + A ++
Sbjct: 294 PDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKL 353

Query: 206 VLDAEI--PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
             + E    + S     + + +   S  R S+    +E +K +G +  P     LI+   
Sbjct: 354 FEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMKGSGISPSPFTYSILIDGFC 413

Query: 264 SEGELNRLIQLLEEVHDPDYWMDGC----CRLILHCVRFKQLSSATDLLKQLKDKFKDDE 319
                 + + LLEE+ +  +    C    C LI    + K+   A +L ++LK+      
Sbjct: 414 KTNRTEKAMMLLEEMDEKGF--PPCPAAYCSLIDALGKAKRYDLANELFQELKENCGSSS 471

Query: 320 MAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKR 379
             +   ++ +   +      D  +  DL   + + LG  P+    + L+     A  L  
Sbjct: 472 ARV---YAVMIKHLGKAGRLDDAV--DLFDEM-NRLGCTPNVYAYNALMSGLARAGMLDE 525

Query: 380 AHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           A    +  ++ G   ++ SY  +  A   +G    A  +L  M
Sbjct: 526 ALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNM 568



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/398 (20%), Positives = 153/398 (38%), Gaps = 44/398 (11%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P++  Y  L+     L  VH AL + E+M      P   T   ++    ++   +   
Sbjct: 257 MQPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRLDEAY 316

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
             +  +     +P++    +MI+   K    D A  L ++++ +  +P+   YN I+   
Sbjct: 317 NFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKAL 376

Query: 127 FRKKD-VQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQIT 182
           F  K  V       + M+ + + P   T+S LI      +  E  +   E++   G    
Sbjct: 377 FESKSRVSEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPC 436

Query: 183 KYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
              + +LI+A      ++ A ++  +  E    S + V + ++  L   GR  DA+ +++
Sbjct: 437 PAAYCSLIDALGKAKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFD 496

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQL 301
           E+   GC     A  AL+  L   G L+  +  +  + D      GC            +
Sbjct: 497 EMNRLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQD-----HGC---------IPDI 542

Query: 302 SSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSR 361
           +S   +L  L                      A T  PD  +G  +L  +K    + P  
Sbjct: 543 NSYNIILNAL----------------------AKTGGPDRAMG--MLCNMKQS-AIKPDA 577

Query: 362 KCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSY 399
              + +LGA  +A   + A  + KE    G  Y++++Y
Sbjct: 578 VSYNTVLGALSHAGMFEEAAKLMKEMNAIGFDYDLITY 615


>gi|403366299|gb|EJY82949.1| hypothetical protein OXYTRI_19434 [Oxytricha trifallax]
          Length = 1420

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/420 (19%), Positives = 187/420 (44%), Gaps = 39/420 (9%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P   + N+I+  C +  +  L   ++ ++    LKPN  T+ S+I   V+    +SA+ L
Sbjct: 582 PDEISFNTIIKGCAQEKKLQLAFEMFNLMKMQCLKPNDVTYNSLIDACVRCNRLNSAWQL 641

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKK----------DVQGALMVLKEMEQAN--VKPDS 151
           L ++++ N++P    Y+ ++ G   +           D++ A  +L++M+Q+N  VKPD 
Sbjct: 642 LSEMQQNNIVPDNFTYSTLIKGIRAENQSQNGISNPMDLEKAFALLEQMKQSNGGVKPDE 701

Query: 152 QTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA----RQ 204
             ++ LI  C    D+   +  +++++ +  + +   +  LI AY +  + + A    ++
Sbjct: 702 ILYNCLIDACVRFHDVNRAVAVFQEMQFSNIKPSSVTYGILIKAYGSANQLDNAFFVFKK 761

Query: 205 VVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE---- 260
           +  +  IP    S     L+ A   + +   A+ V+E +K  G  L       LI+    
Sbjct: 762 MKDNCLIP---NSVTYGCLIDACVKNNQIERAMEVFETMKRDGVQLNTIIFTTLIKGFAK 818

Query: 261 --HLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDD 318
              L+   E+ +++++ +++   +   +    LI  C+R   +  A ++ +++K      
Sbjct: 819 SFKLDQALEVYQIMKMDDKIKPNNVTFNS---LIDCCIRCNSIKKAMEIFEEMKQPISHT 875

Query: 319 EMAMEYHFSEI--FCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARD 376
           +  +  + + I  FC+       ++Q  L +L  ++    +       + LL  C  A +
Sbjct: 876 KPDLITYSTMIKGFCR-----EKNIQQALIMLNDMEKN-NIMADEVLYNSLLDGCCKANE 929

Query: 377 LKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQAC 436
           ++ A  ++K  E   +  + ++Y  + K +    N   A  +L +M KD      ++  C
Sbjct: 930 IEMALKVYKNMEILKIKPSNVTYSILIKIYGKQRNLPKALGVLEEMKKDGIRPGLIVYTC 989



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 163/373 (43%), Gaps = 60/373 (16%)

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
           HH ++P+  +F ++I    + K    A+ + + +K   L P    YN+++    R   + 
Sbjct: 577 HHFMRPDEISFNTIIKGCAQEKKLQLAFEMFNLMKMQCLKPNDVTYNSLIDACVRCNRLN 636

Query: 134 GALMVLKEMEQANVKPDSQTFSYLI----------HNCSNEEDIIKYY---EQLKSAGGQ 180
            A  +L EM+Q N+ PD+ T+S LI          +  SN  D+ K +   EQ+K + G 
Sbjct: 637 SAWQLLSEMQQNNIVPDNFTYSTLIKGIRAENQSQNGISNPMDLEKAFALLEQMKQSNGG 696

Query: 181 IT--KYVFMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAI 237
           +   + ++  LI+A     +  +A  V  + +   +K  S     L+ A  S  +  +A 
Sbjct: 697 VKPDEILYNCLIDACVRFHDVNRAVAVFQEMQFSNIKPSSVTYGILIKAYGSANQLDNAF 756

Query: 238 IVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHC 295
            V++++K+  C L P +V    LI+      ++ R +++ E +       DG   + L+ 
Sbjct: 757 FVFKKMKD-NC-LIPNSVTYGCLIDACVKNNQIERAMEVFETMK-----RDG---VQLNT 806

Query: 296 VRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDEL 355
           + F      T L+K     FK D+                         L++ Q +K + 
Sbjct: 807 IIF------TTLIKGFAKSFKLDQ------------------------ALEVYQIMKMDD 836

Query: 356 GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYEN--AGLPYNVLSYLWMYKAFLASGNRK 413
            + P+    + L+  C+    +K+A  I++E +   +    ++++Y  M K F    N +
Sbjct: 837 KIKPNNVTFNSLIDCCIRCNSIKKAMEIFEEMKQPISHTKPDLITYSTMIKGFCREKNIQ 896

Query: 414 SASKLLSKMPKDD 426
            A  +L+ M K++
Sbjct: 897 QALIMLNDMEKNN 909



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 94/450 (20%), Positives = 192/450 (42%), Gaps = 43/450 (9%)

Query: 17  LITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHN 76
           +I   C   ++  AL+V+  M +  + P     NSI+  C ++ +      +Y  +    
Sbjct: 372 MIKGYCRAQRLPQALNVLSIMKERGIKPDEVLYNSIIDGCSKNNQIAKAFLLYDEMLGEG 431

Query: 77  LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY---FRKKDVQ 133
           + P + TF S+I   V+  + D A+ +L+ +KE  + P    Y+ +  G     +++D++
Sbjct: 432 VTPTTITFNSLIDCCVRSGNQDQAWRVLEQMKEKQVKPDNYTYSTLFKGIKSENQRQDLE 491

Query: 134 GALMVLKEMEQAN-VKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINA 192
            A ++  +++ +N   PD   F+ L+  C N + + +  E  K    Q    + ++  + 
Sbjct: 492 KAFVLYNQLQNSNDFTPDEILFNVLLDACINCKQLDRAVELFKQLKPQSQPQIQVSNTDD 551

Query: 193 YTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP 252
                  E +     +A            A+V++   H    D I     IK  GC  E 
Sbjct: 552 ADNSLSLEDSPDSAKNA-----------PAVVNSSNHHFMRPDEISFNTIIK--GCAQEK 598

Query: 253 RAVIALIEHLNSEGELNRLIQL-LEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQL 311
           +  +A         E+  L+++   + +D  Y       LI  CVR  +L+SA  LL ++
Sbjct: 599 KLQLAF--------EMFNLMKMQCLKPNDVTYN-----SLIDACVRCNRLNSAWQLLSEM 645

Query: 312 KDKFKDDEMAMEYHFSEIF--------CQIATTDPPDVQIGLDLLQFIK-DELGLPPSRK 362
           +   +++ +   + +S +          Q   ++P D++    LL+ +K    G+ P   
Sbjct: 646 Q---QNNIVPDNFTYSTLIKGIRAENQSQNGISNPMDLEKAFALLEQMKQSNGGVKPDEI 702

Query: 363 CLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
             + L+ ACV   D+ RA  +++E + + +  + ++Y  + KA+ ++    +A  +  KM
Sbjct: 703 LYNCLIDACVRFHDVNRAVAVFQEMQFSNIKPSSVTYGILIKAYGSANQLDNAFFVFKKM 762

Query: 423 PKDDPHVRFVIQACKQTYTIPSLQKERGFE 452
             +      V   C     + + Q ER  E
Sbjct: 763 KDNCLIPNSVTYGCLIDACVKNNQIERAME 792



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 94/465 (20%), Positives = 191/465 (41%), Gaps = 78/465 (16%)

Query: 9    PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
            P   S+  +I       K+ +A ++   M    L P+  T NS++ AC      N   ++
Sbjct: 582  PDEISFNTIIKGCAQEKKLQLAFEMFNLMKMQCLKPNDVTYNSLIDACVRCNRLNSAWQL 641

Query: 69   YPMICHHNLKPNSETFRSMI--------SLN--VKIKDFDSAYSLLDDLKEMN--LMPTA 116
               +  +N+ P++ T+ ++I        S N      D + A++LL+ +K+ N  + P  
Sbjct: 642  LSEMQQNNIVPDNFTYSTLIKGIRAENQSQNGISNPMDLEKAFALLEQMKQSNGGVKPDE 701

Query: 117  SMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH----------------- 159
             +YN ++    R  DV  A+ V +EM+ +N+KP S T+  LI                  
Sbjct: 702  ILYNCLIDACVRFHDVNRAVAVFQEMQFSNIKPSSVTYGILIKAYGSANQLDNAFFVFKK 761

Query: 160  ---NC-----------------SNE-EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGE 198
               NC                 +N+ E  ++ +E +K  G Q+   +F  LI  +    +
Sbjct: 762  MKDNCLIPNSVTYGCLIDACVKNNQIERAMEVFETMKRDGVQLNTIIFTTLIKGFAKSFK 821

Query: 199  FEKARQV--VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI 256
             ++A +V  ++  +  +K  +   ++L+           A+ ++EE+K+   + +P  + 
Sbjct: 822  LDQALEVYQIMKMDDKIKPNNVTFNSLIDCCIRCNSIKKAMEIFEEMKQPISHTKPDLIT 881

Query: 257  --ALIEHLNSEGELNRLIQLLEEVHDPDYW---------MDGCCRLILHCVRFKQLSSAT 305
               +I+    E  + + + +L ++   +           +DGCC+         ++  A 
Sbjct: 882  YSTMIKGFCREKNIQQALIMLNDMEKNNIMADEVLYNSLLDGCCKA-------NEIEMAL 934

Query: 306  DLLKQLKD-KFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCL 364
             + K ++  K K   +        I  +I      ++   L +L+ +K + G+ P     
Sbjct: 935  KVYKNMEILKIKPSNVTY-----SILIKIYGKQ-RNLPKALGVLEEMKKD-GIRPGLIVY 987

Query: 365  DFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLAS 409
              LL  C+ +R LK A  ++ +    G+  + L+Y  M    L S
Sbjct: 988  TCLLQTCIKSRQLKTAEQLFHDMRIQGIRGDQLTYQTMINGCLYS 1032



 Score = 39.7 bits (91), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 71/156 (45%), Gaps = 1/156 (0%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P    Y  LI        V+ A+ V ++M    + PS+ T   ++ A   + + +   
Sbjct: 697 VKPDEILYNCLIDACVRFHDVNRAVAVFQEMQFSNIKPSSVTYGILIKAYGSANQLDNAF 756

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +  + L PNS T+  +I   VK    + A  + + +K   +     ++  ++ G+
Sbjct: 757 FVFKKMKDNCLIPNSVTYGCLIDACVKNNQIERAMEVFETMKRDGVQLNTIIFTTLIKGF 816

Query: 127 FRKKDVQGALMVLKEMEQAN-VKPDSQTFSYLIHNC 161
            +   +  AL V + M+  + +KP++ TF+ LI  C
Sbjct: 817 AKSFKLDQALEVYQIMKMDDKIKPNNVTFNSLIDCC 852


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 113/241 (46%), Gaps = 12/241 (4%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   ++  LI   C  LK+  AL +VE+M +  + P T T NS+L+   ++ + N V   
Sbjct: 429 PDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNET 488

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +      PN  T+  +I    +    + A  ++  + +  L P A  +N ++ G+ R
Sbjct: 489 FQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCR 548

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYV 185
             D++GA ++ +++E+      + TF+ LI   S + ++    K ++++ S G +   Y 
Sbjct: 549 NGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYT 608

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
           +  LI+        ++A   +++          +K   + ++++ GR  +++ V   + +
Sbjct: 609 YRVLIDGSCKTANVDRAYMHLVEM---------IKKGFIPSMSTFGRVINSLTVNHRVFQ 659

Query: 246 A 246
           A
Sbjct: 660 A 660



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 81/409 (19%), Positives = 159/409 (38%), Gaps = 50/409 (12%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS 86
            H A  + +QM+   + P+    N +LHA  +  +      +   +    +  N  T+  
Sbjct: 168 THDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNI 227

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
            I    +      A  L+D ++   + P    YN ++ G  +K   Q A+  L+ M    
Sbjct: 228 WIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQG 286

Query: 147 VKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA---GGQITKYVFMALINAYTTCGEFEKAR 203
             PD  T++ +I        + +  E LK A   G    +  + +LIN     G+ E+A 
Sbjct: 287 CLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERAL 346

Query: 204 QVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
           ++  +A+   +K    V ++LV  L   G    A+ V  E+ E GC+             
Sbjct: 347 ELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCH------------- 393

Query: 263 NSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAM 322
                         ++   +  ++G C++         +S AT ++         ++  M
Sbjct: 394 -------------PDIQTYNIVINGLCKM-------GNISDATVVM---------NDAIM 424

Query: 323 EYHFSEIFCQIATTDPPDVQIGLD-LLQFIKD--ELGLPPSRKCLDFLLGACVNARDLKR 379
           + +  ++F      D    ++ LD  LQ ++   E G+ P     + +L     A  +  
Sbjct: 425 KGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNE 484

Query: 380 AHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPH 428
            +  ++E    G   N ++Y  + + F  S   + ASK++ KM ++  H
Sbjct: 485 VNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLH 533



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 63/314 (20%), Positives = 127/314 (40%), Gaps = 10/314 (3%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  LI   C       A+  + +M+    +P   T N+I+    +         +
Sbjct: 254 PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATEL 313

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
                     P+  T+ S+I+      D + A  L ++ +   + P   +YN+++ G   
Sbjct: 314 LKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCL 373

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA---GGQITKYV 185
           +  +  AL V+ EM +    PD QT++ +I+      +I      +  A   G     + 
Sbjct: 374 QGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFT 433

Query: 186 FMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           F  LI+ Y    + + A Q+V    E  +   +   +++++ L   G+ ++    ++E+ 
Sbjct: 434 FNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMI 493

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNR----LIQLLEEVHDPDYWMDGCCRLILHCVRFKQ 300
             GC+  P     LIE+     ++      ++++ +E   PD        LI    R   
Sbjct: 494 LKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFN--TLIYGFCRNGD 551

Query: 301 LSSATDLLKQLKDK 314
           L  A  L ++L++K
Sbjct: 552 LEGAYLLFQKLEEK 565


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 116/262 (44%), Gaps = 12/262 (4%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +I+   D      ALD+ ++M++  + P   T+ +++ AC +S    L R+++  I
Sbjct: 202 SWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWI 261

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
             H L  N +   ++I L  K  + ++A  L   L   +++     +N ++ GY      
Sbjct: 262 DDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVIS----WNTMIGGYTHLNLY 317

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI-----IKYYEQLKSAGGQITKYVFM 187
           + AL++ +EM ++   P+  T   ++  C+    I     I  Y   +  G      +  
Sbjct: 318 KEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRT 377

Query: 188 ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           +LI+ Y  CG+ E A QV         S     +A++   A HGR + A  ++  +++ G
Sbjct: 378 SLIDMYAKCGDIEAAHQVFNSMHHRTLSAC---NAMIFGFAMHGRANAAFDIFSRMRKNG 434

Query: 248 CNLEPRAVIALIEHLNSEGELN 269
              +    + L+   +  G L+
Sbjct: 435 IEPDDITFVGLLSACSHSGMLD 456



 Score = 45.1 bits (105), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 53/271 (19%), Positives = 110/271 (40%), Gaps = 50/271 (18%)

Query: 51  SILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDS---AYSLLDDL 107
           S+LH C+       +R I+  +    L   +     ++   +   +FD    A S+ + +
Sbjct: 7   SLLHNCKT---LQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETI 63

Query: 108 KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---E 164
           +E NL+    ++N +  G+    D   A+ +   M    + P+S TF +L+ +C+     
Sbjct: 64  QEPNLL----IWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVS 119

Query: 165 EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA--------------- 209
           ++  + +  +   G ++  YV  +LI+ Y   G ++ A +V   +               
Sbjct: 120 KEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGY 179

Query: 210 --------------EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255
                         EIPVK      +A++S  A  G   +A+ +++E+ +     +   +
Sbjct: 180 ASRGYIESAQKMFDEIPVKDVVSW-NAIISGYADTGNNKEALDLFKEMMKTNVKPDESTM 238

Query: 256 IALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
           + ++      G     IQL  +VH    W+D
Sbjct: 239 VTVVSACAQSGS----IQLGRQVHS---WID 262


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/325 (20%), Positives = 145/325 (44%), Gaps = 37/325 (11%)

Query: 1   MHAKL---EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACE 57
           +HA++    ++P+  +Y  LI   C    ++ A++  +QM    L P+  T  +I++   
Sbjct: 110 LHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFA 169

Query: 58  ESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTAS 117
           +    +   R+   +      P+  T+ ++I+ +  +   + A  LL D+    ++P   
Sbjct: 170 QQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVV 229

Query: 118 MYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQL 174
            Y+ I++G+ R +++  A  +  EM   +V PD+ T+S LI     +  + +    ++++
Sbjct: 230 SYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEM 289

Query: 175 KSAGGQITKYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASH 230
            +      ++ +  LINAY   G+  KA     +++    +P    +   + L++ L   
Sbjct: 290 LTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLP---DAVTYNVLINGLNKQ 346

Query: 231 GRTSDA---------------IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLL 275
            R+ +A                + Y  + E  CN+E ++ +AL++    +G ++   Q+ 
Sbjct: 347 ARSKEARRLLLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGLMDEADQVF 406

Query: 276 EEV----HDP-----DYWMDGCCRL 291
           E +    H P     +  + G CR+
Sbjct: 407 ESMINKNHKPNEAIYNVIIHGHCRI 431



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 123/285 (43%), Gaps = 10/285 (3%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVRR 67
           P+  ++  +I   C   ++    +V+ +M +   VP   T N++++  C+E   F+    
Sbjct: 51  PNLITFNMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEG-NFHQALV 109

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           ++  +  + L PN  T+ S+I+   K  + + A    D +    L P    Y  I+ G+ 
Sbjct: 110 LHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFA 169

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKY 184
           ++  +  A  VL EM ++   P   T++ LI+        E+ I   + +   G      
Sbjct: 170 QQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVV 229

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKS---RSEVKSALVSALASHGRTSDAIIVYE 241
            +  +I+ +    E ++A Q  +  E+  KS    +   S+L+  L    R ++A  +++
Sbjct: 230 SYSTIISGFARNQELDRAFQ--MKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQ 287

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
           E+       +      LI     EG+LN+ + L +E+    +  D
Sbjct: 288 EMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPD 332



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 77/369 (20%), Positives = 135/369 (36%), Gaps = 42/369 (11%)

Query: 79  PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMV 138
           PN  T+ +MI    K+K  D A+  L  +    L P    +N I+ G  R   ++    V
Sbjct: 16  PNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGRLKETSEV 75

Query: 139 LKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTT 195
           L EM +    PD  T++ L++    E +    +  + ++   G       + +LIN+   
Sbjct: 76  LVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCK 135

Query: 196 CGEFEKARQVVLDAEIPVKSRSE-VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRA 254
            G   +A +      +     +E   + +++  A  G   +A  V  E+  +G    P  
Sbjct: 136 AGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSG--FIPSI 193

Query: 255 VI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLK 312
           V   ALI      G +   I LL+++       D         V +  + S     ++L 
Sbjct: 194 VTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPD--------VVSYSTIISGFARNQELD 245

Query: 313 DKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDE---------------LGL 357
             F   +M +E         I  +  PD      L+Q + ++               + L
Sbjct: 246 RAF---QMKVE--------MIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKL 294

Query: 358 PPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASK 417
           PP       L+ A     DL +A  +  E    G   + ++Y  +          K A +
Sbjct: 295 PPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARR 354

Query: 418 LLSKMPKDD 426
           LL K+  DD
Sbjct: 355 LLLKLFYDD 363



 Score = 46.2 bits (108), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 73/356 (20%), Positives = 139/356 (39%), Gaps = 22/356 (6%)

Query: 113 MPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE 172
           +P    YN ++ GY + K    A   L+ M    ++P+  TF+ +I+    +  + +  E
Sbjct: 15  LPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGRLKETSE 74

Query: 173 ---QLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE---VKSALVSA 226
              ++   G    +  +  L+N Y   G F +A  +VL AE+     S      ++L+++
Sbjct: 75  VLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQA--LVLHAEMVRNGLSPNVVTYTSLINS 132

Query: 227 LASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
           +   G  + A+  ++++   G     R    +I     +G L+   ++L E+    +   
Sbjct: 133 MCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPS 192

Query: 287 GCCRLIL---HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQI 343
                 L   HCV   ++  A  LL+ +  K    ++     +S I    A     D   
Sbjct: 193 IVTYNALINGHCV-LGRMEEAIGLLQDMVGKGVLPDVV---SYSTIISGFARNQELDRAF 248

Query: 344 GLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMY 403
            + +    K    LP +      + G C   R L  A  +++E     LP +  +Y  + 
Sbjct: 249 QMKVEMIGKSV--LPDAVTYSSLIQGLC-EQRRLTEACDMFQEMLTIKLPPDEFTYTTLI 305

Query: 404 KAFLASGNRKSASKLLSKMPKDDPHVRFVIQACKQTYTIPSLQKERGFEKDRDTLL 459
            A+   G+   A  L  +M +      F+  A      I  L K+   ++ R  LL
Sbjct: 306 NAYCKEGDLNKALHLHDEMIQKG----FLPDAVTYNVLINGLNKQARSKEARRLLL 357



 Score = 46.2 bits (108), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 74/169 (43%), Gaps = 15/169 (8%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           +++ P   +Y  LI   C    ++ AL + ++M+Q   +P   T N +++   +      
Sbjct: 292 IKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKE 351

Query: 65  VRRIYPMICHHNLKPNSETFRSMIS--LNVKIKD-------------FDSAYSLLDDLKE 109
            RR+   + + +  P++ T+ ++I    N++ K               D A  + + +  
Sbjct: 352 ARRLLLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGLMDEADQVFESMIN 411

Query: 110 MNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            N  P  ++YN I+ G+ R  +V  A  + KEM   +  P + T   L+
Sbjct: 412 KNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVHVDFVPHTVTVLALV 460



 Score = 42.7 bits (99), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 82/185 (44%), Gaps = 17/185 (9%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           + P + +Y  LI   C+  ++  A D+ ++M+  +L P   T  ++++A C+E  + N  
Sbjct: 259 VLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEG-DLNKA 317

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN----- 120
             ++  +      P++ T+  +I+   K      A  LL  L   + +P+A  YN     
Sbjct: 318 LHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIEN 377

Query: 121 ----------AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY 170
                     A++ G+  K  +  A  V + M   N KP+   ++ +IH      +++K 
Sbjct: 378 CCNIEFKSAVALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKA 437

Query: 171 YEQLK 175
           Y+  K
Sbjct: 438 YKLYK 442


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 89/461 (19%), Positives = 183/461 (39%), Gaps = 59/461 (12%)

Query: 12  ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPM 71
           ASY  +I + C L ++  A  ++  M      P   + +++++      E + V ++  +
Sbjct: 247 ASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEV 306

Query: 72  ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131
           +    LKPNS  + S+I L  +I     A     ++    ++P   +Y  ++ G+ ++ D
Sbjct: 307 MKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGD 366

Query: 132 VQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMA 188
           ++ A     EM   ++ PD  T++ +I       D++   K + ++   G +     F  
Sbjct: 367 IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTE 426

Query: 189 LINAYTTCGEFEKARQV------------------VLDA------------------EIP 212
           LIN Y   G  + A +V                  ++D                   +I 
Sbjct: 427 LINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 486

Query: 213 VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLI 272
           ++      +++V+ L   G   +A+ +  E + AG N +      L++     GE+++  
Sbjct: 487 LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 546

Query: 273 QLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQ 332
           ++L+E+            L    V F  L +   L   L    +D E  + +  ++    
Sbjct: 547 EILKEMLGKG--------LQPTIVTFNVLMNGFCLHGML----EDGEKLLNWMLAKGIAP 594

Query: 333 IATTDPPDVQI-----GLDLLQFIKDEL---GLPPSRKCLDFLLGACVNARDLKRAHLIW 384
            ATT    V+       L     I  ++   G+ P  K  + L+     AR++K A  ++
Sbjct: 595 NATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLF 654

Query: 385 KEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKD 425
           +E +  G   +V +Y  + K FL       A ++  +M ++
Sbjct: 655 QEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRRE 695



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 97/209 (46%), Gaps = 4/209 (1%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           MH++ +ITP   +Y  +I+  C +  +  A  +  +M    L P + T   +++   ++ 
Sbjct: 377 MHSR-DITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAG 435

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
                 R++  +      PN  T+ ++I    K  D DSA  LL ++ ++ L P    YN
Sbjct: 436 HMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYN 495

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK---SA 177
           +I+ G  +  +++ A+ ++ E E A +  D+ T++ L+       ++ K  E LK     
Sbjct: 496 SIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGK 555

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVV 206
           G Q T   F  L+N +   G  E   +++
Sbjct: 556 GLQPTIVTFNVLMNGFCLHGMLEDGEKLL 584



 Score = 45.4 bits (106), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 34/188 (18%), Positives = 81/188 (43%), Gaps = 13/188 (6%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSI-----LHACEESYE 61
           +   + +Y  L+   C   ++  A +++++M+   L P+  T N +     LH   E  E
Sbjct: 522 LNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGE 581

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
                ++   +    + PN+ TF S++       +  +A ++  D+    + P    Y  
Sbjct: 582 -----KLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYEN 636

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAG 178
           ++ G+ + ++++ A  + +EM+         T+S LI      +  +   + ++Q++  G
Sbjct: 637 LVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREG 696

Query: 179 GQITKYVF 186
               K +F
Sbjct: 697 LAADKEIF 704


>gi|449530367|ref|XP_004172167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like, partial [Cucumis sativus]
          Length = 564

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/330 (21%), Positives = 145/330 (43%), Gaps = 43/330 (13%)

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
           H  +K N +T+  +I+  +K+KD+ +A+++ +DL +  + P   +YN I+  +     + 
Sbjct: 116 HAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMD 175

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALI 190
            A+  +KEM++   KP ++TF  +IH  + + ++ K    ++ ++ +G   T + + ALI
Sbjct: 176 RAVCTVKEMQKQRHKPTTRTFMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALI 235

Query: 191 NAYTTCGEFEKARQVVLDAEIPVKSRSE-VKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
                  + EKA Q++ +  +   S +E   + ++   AS G T  A   + ++++ G  
Sbjct: 236 LGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQ 295

Query: 250 LEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLK 309
           L+     AL++     G +   + + +E                  +  + +   T +  
Sbjct: 296 LDVYTYEALLKACCKSGRMQSALAVTKE------------------MSAQNIPRNTFIYN 337

Query: 310 QLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLG 369
            L D +                        DV    DL+Q +K E G+ P        + 
Sbjct: 338 ILIDGW--------------------ARRGDVWEAADLMQQMKRE-GVQPDIHTYTSFIN 376

Query: 370 ACVNARDLKRAHLIWKEYENAGLPYNVLSY 399
           AC  A D++RA    +E ++ G+  NV +Y
Sbjct: 377 ACSKAGDMQRATKTIEEMKSVGVKPNVKTY 406



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 133/311 (42%), Gaps = 39/311 (12%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTET----INSILHACEESYEF 62
           + PS  +Y  LI     L KV  AL+V ++M    +  + +T    IN  L   + +  F
Sbjct: 84  LNPSVITYGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLKLKDWANAF 143

Query: 63  ----NLVR-RIYP-MICHHNL-------------------------KPNSETFRSMISLN 91
               +L++  I P ++ ++N+                         KP + TF  +I   
Sbjct: 144 AIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMPIIHGF 203

Query: 92  VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151
            +  +   A  + D ++    +PT   YNA++ G   K+ ++ A  +L EM  A V P+ 
Sbjct: 204 ARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNE 263

Query: 152 QTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
            T++ ++H  ++  D  K   Y+ +L+  G Q+  Y + AL+ A    G  + A  V  +
Sbjct: 264 HTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKE 323

Query: 209 AEIPVKSRSE-VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
                  R+  + + L+   A  G   +A  + +++K  G   +     + I   +  G+
Sbjct: 324 MSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKREGVQPDIHTYTSFINACSKAGD 383

Query: 268 LNRLIQLLEEV 278
           + R  + +EE+
Sbjct: 384 MQRATKTIEEM 394



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 119/289 (41%), Gaps = 42/289 (14%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P    Y  +IT  C + K+  A+  V++M +    P+T T   I+H      E     
Sbjct: 154 IKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMPIIHGFARKGEMKKAL 213

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++ M+      P   T+ ++I   V+ +  + A  +LD++    + P    Y  IM GY
Sbjct: 214 DVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGY 273

Query: 127 FRKKD-----------------------------------VQGALMVLKEMEQANVKPDS 151
               D                                   +Q AL V KEM   N+  ++
Sbjct: 274 ASLGDTGKAFAYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNT 333

Query: 152 QTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
             ++ LI   +   D+ +     +Q+K  G Q   + + + INA +  G+ ++A + + +
Sbjct: 334 FIYNILIDGWARRGDVWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATKTIEE 393

Query: 209 AE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP-RAV 255
            + + VK   +  + L++  A       A+  +EE+K +G  L+P RAV
Sbjct: 394 MKSVGVKPNVKTYTTLINGWARASLPEKALSCFEEMKLSG--LKPDRAV 440



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 67/347 (19%), Positives = 142/347 (40%), Gaps = 34/347 (9%)

Query: 96  DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFS 155
           + D A +L+ +++E  +     +Y+ +M GY    D    L+V +  ++  + P   T+ 
Sbjct: 33  NMDKAEALVREMEEEGIDAPIDIYHTMMDGYTMVGDEDKCLLVFERFKECGLNPSVITYG 92

Query: 156 YLIHNCSNEEDIIKYYE---QLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEI 211
            LI+  +    + K  E   +++ AG +     +  LIN +    ++  A  +  D  + 
Sbjct: 93  CLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDLIKD 152

Query: 212 PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRL 271
            +K    + + +++A    G+   A+   +E+++       R  + +I     +GE+ + 
Sbjct: 153 GIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMPIIHGFARKGEMKKA 212

Query: 272 IQLLEEVHDPDYWMDGCC-------RLILHCVRFKQLSSATDLLKQLKDKFKDDEMAM-- 322
           + + + +      M GC         LIL  V  +++  A  +L         DEM +  
Sbjct: 213 LDVFDMMR-----MSGCIPTVHTYNALILGLVEKRKMEKAEQIL---------DEMTLAG 258

Query: 323 ----EYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLK 378
               E+ ++ I    A+    D          ++DE GL       + LL AC  +  ++
Sbjct: 259 VSPNEHTYTTIMHGYASLG--DTGKAFAYFTKLRDE-GLQLDVYTYEALLKACCKSGRMQ 315

Query: 379 RAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKD 425
            A  + KE     +P N   Y  +   +   G+   A+ L+ +M ++
Sbjct: 316 SALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKRE 362



 Score = 42.7 bits (99), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 30/133 (22%), Positives = 60/133 (45%), Gaps = 6/133 (4%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS 86
           V  A D+++QM +  + P   T  S ++AC ++ +     +    +    +KPN +T+ +
Sbjct: 349 VWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTT 408

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ------GALMVLK 140
           +I+   +    + A S  +++K   L P  ++Y+ +M     +  V       G L V +
Sbjct: 409 LINGWARASLPEKALSCFEEMKLSGLKPDRAVYHCLMTSLLSRATVAHGCIYPGILSVCR 468

Query: 141 EMEQANVKPDSQT 153
           EM    +  D  T
Sbjct: 469 EMVDCELTVDMGT 481


>gi|42570531|ref|NP_850859.2| SNF1-like protein kinase [Arabidopsis thaliana]
 gi|75160582|sp|Q8S9D1.1|PP395_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g21222; AltName: Full=SNF1-like protein kinase AtC401
 gi|19071860|dbj|BAB85674.1| SNF1-like protein kinase [Arabidopsis thaliana]
 gi|332005563|gb|AED92946.1| SNF1-like protein kinase [Arabidopsis thaliana]
          Length = 831

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 109/242 (45%), Gaps = 5/242 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           + P+  +   L+   C+  K+  A ++V +M    + P   T N++  A           
Sbjct: 456 LQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAE 515

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             I P + H+ +KPN  T  ++++   +    + A      +KE+ + P   ++N+++ G
Sbjct: 516 DMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKG 575

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQIT 182
           +    D+ G   V+  ME+  VKPD  TFS L++  S+  D+ +    Y  +   G    
Sbjct: 576 FLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPD 635

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
            + F  L   Y   GE EKA Q++    +  V+    + + ++S   S G    A+ VY+
Sbjct: 636 IHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYK 695

Query: 242 EI 243
           ++
Sbjct: 696 KM 697



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 128/312 (41%), Gaps = 41/312 (13%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           PS  +Y  L+T        H  L ++ ++ +  L P T   N+I++A  ES   +   +I
Sbjct: 352 PSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKI 411

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLD-DLKEMNLMPTASMYNAIMAGYF 127
           +  +     KP + TF ++I    KI   + +  LLD  L++  L P     N ++  + 
Sbjct: 412 FEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWC 471

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIH-------NCSNEEDII------------ 168
            ++ ++ A  ++ +M+   VKPD  TF+ L          C+ E+ II            
Sbjct: 472 NQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNV 531

Query: 169 --------------------KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV-L 207
                               +++ ++K  G     +VF +LI  +    + +   +VV L
Sbjct: 532 RTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDL 591

Query: 208 DAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
             E  VK      S L++A +S G       +Y ++ E G + +  A   L +     GE
Sbjct: 592 MEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGE 651

Query: 268 LNRLIQLLEEVH 279
             +  Q+L ++ 
Sbjct: 652 PEKAEQILNQMR 663



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 63/338 (18%), Positives = 146/338 (43%), Gaps = 24/338 (7%)

Query: 100 AYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159
           A+S+ + L E    P+   Y  ++    R+K     L ++ ++E+  +KPD+  F+ +I+
Sbjct: 338 AHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIIN 397

Query: 160 NCS---NEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV---LDAEIPV 213
             S   N +  +K +E++K +G + T   F  LI  Y   G+ E++ +++   L  E+ +
Sbjct: 398 ASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEM-L 456

Query: 214 KSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC-------NLEPRAVIALIEHLNSEG 266
           +      + LV A  +  +  +A  +  +++  G        N   +A   +     +E 
Sbjct: 457 QPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAED 516

Query: 267 ELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHF 326
            +  + ++L     P+  +  C  ++       ++  A     ++K+      + +    
Sbjct: 517 MI--IPRMLHNKVKPN--VRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSL 572

Query: 327 SEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKE 386
            + F  I   D      G+  +  + +E G+ P       L+ A  +  D+KR   I+ +
Sbjct: 573 IKGFLNINDMD------GVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTD 626

Query: 387 YENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424
               G+  ++ ++  + K +  +G  + A ++L++M K
Sbjct: 627 MLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRK 664



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 74/400 (18%), Positives = 151/400 (37%), Gaps = 88/400 (22%)

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           I+  +     KP+  T+ ++++   + K F S  SL+  +++  L P   ++NAI+    
Sbjct: 341 IFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASS 400

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLI----------------------------- 158
              ++  A+ + ++M+++  KP + TF+ LI                             
Sbjct: 401 ESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPND 460

Query: 159 HNCS-------NEEDIIKYYE---QLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
             C+       N+  I + +    +++S G +     F  L  AY   G    A  +++ 
Sbjct: 461 RTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIP 520

Query: 209 AEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE---HLN 263
             +  K +  V++   +V+     G+  +A+  +  +KE G +       +LI+   ++N
Sbjct: 521 RMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNIN 580

Query: 264 SEGELNRLIQLLEEVH-DPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAM 322
               +  ++ L+EE    PD             V F  L +A   +  +K          
Sbjct: 581 DMDGVGEVVDLMEEFGVKPD------------VVTFSTLMNAWSSVGDMKR--------- 619

Query: 323 EYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHL 382
                   C+         +I  D+L     E G+ P       L      A + ++A  
Sbjct: 620 --------CE---------EIYTDML-----EGGIDPDIHAFSILAKGYARAGEPEKAEQ 657

Query: 383 IWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           I  +    G+  NV+ Y  +   + ++G  K A ++  KM
Sbjct: 658 ILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKM 697



 Score = 45.1 bits (105), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 30/161 (18%), Positives = 72/161 (44%), Gaps = 1/161 (0%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++ P+  +   ++   C+  K+  AL    +M +  + P+    NS++       + + V
Sbjct: 526 KVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGV 585

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +  ++    +KP+  TF ++++    + D      +  D+ E  + P    ++ +  G
Sbjct: 586 GEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKG 645

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE 165
           Y R  + + A  +L +M +  V+P+   ++ +I   CS  E
Sbjct: 646 YARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGE 686


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 89/408 (21%), Positives = 164/408 (40%), Gaps = 26/408 (6%)

Query: 28  HVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSM 87
           H+A D    +       +T T+N ++H   ++ EF+ V  +   +    + P+  T   M
Sbjct: 138 HLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVM 197

Query: 88  ISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANV 147
           +    +  D ++A +L+D +    L P    YN+++ G  R      A  V KEM+   V
Sbjct: 198 VDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGV 257

Query: 148 KPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA-- 202
            PD ++F+ LI         E+ +K Y++++  G +     F  LI  +   G+ + A  
Sbjct: 258 APDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMA 317

Query: 203 --RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE 260
             R++     +P      + + ++      G  SDA+ V +E+   GC  +      L+ 
Sbjct: 318 YLREMRCFGLVP---DGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLN 374

Query: 261 HLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL---HCVRFKQLSSATDLLKQLKDKFKD 317
            L  E  L     LL E+ +     D C    L   +C+  K L  A  L   + ++   
Sbjct: 375 GLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGK-LDKALQLFDTMLNQRLR 433

Query: 318 DEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELG---LPPSRKCLDFLLGACVNA 374
            ++       +  C+         Q  LD    + D++    + P+      L+ +    
Sbjct: 434 PDIVTYNTLIDGMCR---------QGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEK 484

Query: 375 RDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
             ++ A     E  N G+  N+++Y  + K +  SGN     K L KM
Sbjct: 485 GQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKM 532



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/237 (20%), Positives = 98/237 (41%), Gaps = 38/237 (16%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   ++  LI   C   K+  AL + + M+   L P   T N+++       + +   
Sbjct: 397 VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKAN 456

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +    + PN  T+  +I  + +    + A+  LD++    ++P    YN+I+ GY
Sbjct: 457 DLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGY 516

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE-------------------DI 167
            R  +V      L++M    V PD  T++ LIH    E+                   D+
Sbjct: 517 CRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDV 576

Query: 168 IKY-------------------YEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           + Y                   +E++ + G +  +Y +M++IN + T G  ++A Q+
Sbjct: 577 VTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQL 633



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/242 (19%), Positives = 101/242 (41%), Gaps = 6/242 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  ++   C       A +V ++M    + P   +   ++       E     
Sbjct: 222 LKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEAL 281

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +IY  + H  +KP+  +F  +I L  +    D A + L +++   L+P   +Y  ++ G+
Sbjct: 282 KIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGF 341

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITK 183
            R   +  AL V  EM      PD  T++ L++    E  ++       +++  G     
Sbjct: 342 CRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDL 401

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYE 241
             F  LI+ Y   G+ +KA Q + D  +  + R ++ +   L+  +   G    A  +++
Sbjct: 402 CTFTTLIHGYCIEGKLDKALQ-LFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWD 460

Query: 242 EI 243
           ++
Sbjct: 461 DM 462



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/274 (17%), Positives = 115/274 (41%), Gaps = 4/274 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  L+   C   ++  A  ++ +M +  + P   T  +++H      + +   ++
Sbjct: 364 PDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQL 423

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  + +  L+P+  T+ ++I    +  D D A  L DD+    + P    Y+ ++  +  
Sbjct: 424 FDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCE 483

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYV 185
           K  V+ A   L EM    + P+  T++ +I       ++    K+ +++           
Sbjct: 484 KGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLIT 543

Query: 186 FMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +  LI+ Y    +   A +++ +  +  V+      + L++  + HG   +A  ++E++ 
Sbjct: 544 YNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMC 603

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
             G   +    +++I    + G      QL +E+
Sbjct: 604 AKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEM 637


>gi|168066429|ref|XP_001785140.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663262|gb|EDQ50036.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 922

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/373 (20%), Positives = 163/373 (43%), Gaps = 23/373 (6%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+D+  QM +  L P+  +  SIL AC+         +I+  I     + +     ++I+
Sbjct: 136 AVDLFYQMQREGLKPNQNSFISILSACQTPIVLEFGEQIHSHITKAGYESDVNVSTALIN 195

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K    + A  + ++++E N++     + A+++GY +  D + A ++ +++ ++  +P
Sbjct: 196 MYCKCGSLELARKVFNEMRERNVVS----WTAMISGYVQHGDSKEAFVLFQKLIRSGTQP 251

Query: 150 DSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           +  +F+ ++  C+N  D+   +K +  +K AG +    V  ALI+ Y  CG    ARQV 
Sbjct: 252 NKVSFASILGACTNPNDLEQGLKLHAYIKQAGLEQEVLVGNALISMYARCGSLANARQVF 311

Query: 207 LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
            +    ++S + V    + A    G   +A  ++ ++++ G   +     +L+       
Sbjct: 312 DN----LRSPNRVSWNAMIAGYGEGFMEEAFRLFRDMQQKGFQPDRFTYASLLAICADRA 367

Query: 267 ELNRLIQLLEEVHDPDYWMD--GCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEY 324
           +LNR  +L  ++    +  D      LI    +   L  A  +  Q+ +K      A+ +
Sbjct: 368 DLNRGKELHSQIVRTAWEADVTVATALISMYAKCGSLEEARKVFNQMPEK-----NAVSW 422

Query: 325 HFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIW 384
           +     C    ++    Q+     Q  +D+  + P       LL +C +  D +R   I 
Sbjct: 423 NAFIACCCRHGSEKEAFQV---FKQMRRDD--VIPDHVTFITLLNSCTSPEDFERGRYIH 477

Query: 385 KEYENAGLPYNVL 397
            + +  G+  N L
Sbjct: 478 GKIDQWGMLSNNL 490



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 75/391 (19%), Positives = 165/391 (42%), Gaps = 27/391 (6%)

Query: 53  LHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNL 112
           L  C ++      ++++  +     +P+      +IS+  K    + A ++   +++ ++
Sbjct: 58  LQECVQAKSLAEGKKVHDHMRSAQFEPDIYLNNMLISMYSKCGSIEDANNVFQSMEDKDV 117

Query: 113 MPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE 172
           +     +NA+++GY      Q A+ +  +M++  +KP+  +F  ++  C     ++++ E
Sbjct: 118 VS----WNAMISGYALHGRGQEAVDLFYQMQREGLKPNQNSFISILSACQT-PIVLEFGE 172

Query: 173 QLKS----AGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSAL 227
           Q+ S    AG +    V  ALIN Y  CG  E AR+V  +    ++ R+ V  +A++S  
Sbjct: 173 QIHSHITKAGYESDVNVSTALINMYCKCGSLELARKVFNE----MRERNVVSWTAMISGY 228

Query: 228 ASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDG 287
             HG + +A ++++++  +G      +  +++    +  +L + ++L   +       + 
Sbjct: 229 VQHGDSKEAFVLFQKLIRSGTQPNKVSFASILGACTNPNDLEQGLKLHAYIKQAGLEQEV 288

Query: 288 CC--RLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGL 345
                LI    R   L++A  +   L+   +    AM   + E F + A     D+Q   
Sbjct: 289 LVGNALISMYARCGSLANARQVFDNLRSPNRVSWNAMIAGYGEGFMEEAFRLFRDMQ--- 345

Query: 346 DLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKA 405
                   + G  P R     LL  C +  DL R   +  +        +V     +   
Sbjct: 346 --------QKGFQPDRFTYASLLAICADRADLNRGKELHSQIVRTAWEADVTVATALISM 397

Query: 406 FLASGNRKSASKLLSKMPKDDPHVRFVIQAC 436
           +   G+ + A K+ ++MP+ +        AC
Sbjct: 398 YAKCGSLEEARKVFNQMPEKNAVSWNAFIAC 428



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 109/249 (43%), Gaps = 23/249 (9%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           +P+  S+  +I    +   +  A  +   M Q    P   T  S+L  C +  + N  + 
Sbjct: 316 SPNRVSWNAMIAGYGEGF-MEEAFRLFRDMQQKGFQPDRFTYASLLAICADRADLNRGKE 374

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           ++  I     + +     ++IS+  K    + A  + + + E N    A  +NA +A   
Sbjct: 375 LHSQIVRTAWEADVTVATALISMYAKCGSLEEARKVFNQMPEKN----AVSWNAFIACCC 430

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKY--- 184
           R    + A  V K+M + +V PD  TF  L+++C++ ED    +E+ +   G+I ++   
Sbjct: 431 RHGSEKEAFQVFKQMRRDDVIPDHVTFITLLNSCTSPED----FERGRYIHGKIDQWGML 486

Query: 185 ----VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAII 238
               V  ALI+ Y  CG+   AR+V          R ++ S  A+++A   HG    A  
Sbjct: 487 SNNLVANALISMYGRCGKLADAREVFYRIR-----RRDLGSWNAMIAAYVQHGANGSAFD 541

Query: 239 VYEEIKEAG 247
           ++ + K  G
Sbjct: 542 LFIKYKSEG 550



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/265 (20%), Positives = 111/265 (41%), Gaps = 21/265 (7%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           ++ S+   I   C       A  V +QM + +++P   T  ++L++C    +F   R I+
Sbjct: 418 NAVSWNAFIACCCRHGSEKEAFQVFKQMRRDDVIPDHVTFITLLNSCTSPEDFERGRYIH 477

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
             I    +  N+    ++IS+  +      A  +   ++  +L      +NA++A Y + 
Sbjct: 478 GKIDQWGMLSNNLVANALISMYGRCGKLADAREVFYRIRRRDL----GSWNAMIAAYVQH 533

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVF 186
                A  +  + +    K D  TF  ++   +N ED+    K +  ++ AG +    + 
Sbjct: 534 GANGSAFDLFIKYKSEGGKGDKYTFINVLRAIANLEDLDAGRKIHGLVEKAGLEKDIRIL 593

Query: 187 MALINAYTTCGEFEKARQVVLDAEIPVKSRSEV-KSALVSALASHGRTSDAIIVYEEIKE 245
             LI  Y+ CG    A  V  +    V+ +  V  +A+++A        DA+ ++++++ 
Sbjct: 594 TTLIKMYSKCGSLRDAYSVFKN----VQEKDVVCWNAMLAAYNHSDHGQDALKLFQQMRL 649

Query: 246 AGCN---------LEPRAVIALIEH 261
            G N         L   A +  IEH
Sbjct: 650 EGVNPDSATYTSVLNACARLGAIEH 674



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/245 (20%), Positives = 102/245 (41%), Gaps = 45/245 (18%)

Query: 48  TINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL 107
           T  ++L A     + +  R+I+ ++    L+ +     ++I +  K      AYS+  ++
Sbjct: 557 TFINVLRAIANLEDLDAGRKIHGLVEKAGLEKDIRILTTLIKMYSKCGSLRDAYSVFKNV 616

Query: 108 KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI 167
           +E +++     +NA++A Y      Q AL + ++M    V PDS T++ +++ C+    I
Sbjct: 617 QEKDVV----CWNAMLAAYNHSDHGQDALKLFQQMRLEGVNPDSATYTSVLNACARLGAI 672

Query: 168 ---IKYYEQLKSAGGQITKYVFMALINA-------------------------------- 192
               K++ QLK A  +     +  ++ A                                
Sbjct: 673 EHGKKFHTQLKEAAMETDTRHYACMVAALGRASLLKEAEEFIEEISSESDALMWESLLVA 732

Query: 193 ---YTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
              +   G  E A + +LD  +  +S   V   L++  A+ GR  D  ++   ++EAG  
Sbjct: 733 CRIHHNVGLAETAVEHLLD--VKAQSSPAVCEQLMNIYAAAGRWEDVSVIKATMREAGL- 789

Query: 250 LEPRA 254
           L P++
Sbjct: 790 LAPKS 794


>gi|297734659|emb|CBI16710.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/274 (21%), Positives = 119/274 (43%), Gaps = 4/274 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   ++  +I   C    +H+   ++  M +    P+    N +++AC      +     
Sbjct: 54  PCKYTFSGIILGFCRKGCIHLGESLLHLMPKFHCEPNAFAYNIVINACCIRGRTSDALAW 113

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           + ++      P   TF ++I+   K  +   A  L D LKEM   P A MYN +M GY +
Sbjct: 114 FNLMIERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVK 173

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITKYV 185
            +++  A M+ +EM +  + PD  TF+ L+   +    EED  +  + +   G    + +
Sbjct: 174 MREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSL 233

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIK 244
           F   ++     G  ++A + ++D      S S +  +++++A +  G    A   Y+ + 
Sbjct: 234 FDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMV 293

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
             G    P    +L+  L+  G L    +L+ ++
Sbjct: 294 HFGLTPSPSTCSSLLMGLSINGRLQEATELIGQM 327



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 72/430 (16%), Positives = 183/430 (42%), Gaps = 22/430 (5%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEF 62
           K    P++ +Y  +I   C   +   AL     M++    P+  T N++++A C+E    
Sbjct: 84  KFHCEPNAFAYNIVINACCIRGRTSDALAWFNLMIERGCNPTVVTFNTVINAFCKEG--- 140

Query: 63  NLV--RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           N+V  R+++  +      PN+  + ++++  VK+++ D A  L +++++  + P    +N
Sbjct: 141 NVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDGITFN 200

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSA 177
            +++G+++    +    +LK++    + PD   F   +         ++ +++   +   
Sbjct: 201 ILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEK 260

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDA 236
           G   +   F ++I AY+  G  +KA +   L     +       S+L+  L+ +GR  +A
Sbjct: 261 GLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQEA 320

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCV 296
             +  ++ E G ++   A   L++     G++     L  E+     + D     ++   
Sbjct: 321 TELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFPD-----VVAFS 375

Query: 297 RFKQLSSATDLLKQLKDKF----KDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIK 352
            F    S   L+++  + F    +   +   + ++ + C        +  + L+    + 
Sbjct: 376 AFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKLEK---VM 432

Query: 353 DELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNR 412
              GL P     + ++G       ++ A  ++ +    GL  ++++Y  +   +  + + 
Sbjct: 433 RHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDM 492

Query: 413 KSASKLLSKM 422
            +A  L+++M
Sbjct: 493 VNADNLVNRM 502



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 3/191 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P   ++   I        V  A +V  +M++  L+P+    NS++    +  + N   
Sbjct: 367 IFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEAL 426

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           ++  ++ H  L P+  T   +I    K     SA ++  D+ +  L P    YN ++ GY
Sbjct: 427 KLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGY 486

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE--DIIKYYEQLKSAGGQITK 183
            +  D+  A  ++  M  +   PD  T++  IH  CS+      +   ++L SAG     
Sbjct: 487 CKAFDMVNADNLVNRMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLMLDELVSAGILSFS 546

Query: 184 YVFMALINAYT 194
           +     +NA+T
Sbjct: 547 FACPPTLNAHT 557


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 119/242 (49%), Gaps = 14/242 (5%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+++  +MVQG++ P+  T +S+L AC    +  L  ++Y ++    L   +    S+IS
Sbjct: 234 AIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLIS 293

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  +  + ++A    D L E NL+     YN I+  Y +  + + A  +  E+E A    
Sbjct: 294 MYSRCGNMENARKAFDVLFEKNLVS----YNTIVNAYAKSLNSEEAFELFNEIEGAGTGV 349

Query: 150 DSQTFSYLIHNCSNEEDIIKYYEQLKS----AGGQITKYVFMALINAYTTCGEFEKARQV 205
           ++ TF+ L+   S+   I K  EQ+ S    +G +   ++  ALI+ Y+ CG  E A QV
Sbjct: 350 NAFTFASLLSGASSIGAIGK-GEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQV 408

Query: 206 VLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
             +  +  V S     +++++  A HG  + A+  + ++ EAG +      IA++   + 
Sbjct: 409 FNEMGDGNVISW----TSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSH 464

Query: 265 EG 266
            G
Sbjct: 465 VG 466



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 112/252 (44%), Gaps = 14/252 (5%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+D+   MV    VP   T++ ++ AC E    +L R+ + ++    L  +     S++ 
Sbjct: 129 AVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVD 188

Query: 90  LNVKI---KDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV-QGALMVLKEMEQA 145
           +  K       D A  + D +   N+M     + AI+ GY +     + A+ +  EM Q 
Sbjct: 189 MYAKCVADGSVDDARKVFDRMPVHNVMS----WTAIITGYVQSGGCDREAIELFLEMVQG 244

Query: 146 NVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
            VKP+  TFS ++  C+N  DI    + Y  +          V  +LI+ Y+ CG  E A
Sbjct: 245 QVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENA 304

Query: 203 RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
           R+     ++  +      + +V+A A    + +A  ++ EI+ AG  +      +L+   
Sbjct: 305 RKAF---DVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGA 361

Query: 263 NSEGELNRLIQL 274
           +S G + +  Q+
Sbjct: 362 SSIGAIGKGEQI 373



 Score = 45.1 bits (105), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 52/284 (18%), Positives = 117/284 (41%), Gaps = 11/284 (3%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           SY  ++      L    A ++  ++       +  T  S+L             +I+  I
Sbjct: 318 SYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRI 377

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
                K N     ++IS+  +  + ++A+ + +++ + N++   SM    + G+ +    
Sbjct: 378 LKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSM----ITGFAKHGFA 433

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYV-FMA 188
             AL    +M +A V P+  T+  ++  CS+   I   +K+++ +K   G + +   +  
Sbjct: 434 TRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYAC 493

Query: 189 LINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC 248
           +++     G  E+A ++V    +P K+ + V    + A   HG         E I E   
Sbjct: 494 VVDLLGRSGHLEEAMELV--NSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDP 551

Query: 249 NLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLI 292
           + +P A I L     S G+   + ++ +++ + +   +  C  I
Sbjct: 552 H-DPAAYILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWI 594


>gi|328774747|gb|AEB39773.1| pentatricopeptide repeat protein 43 [Funaria hygrometrica]
          Length = 1073

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 92/179 (51%), Gaps = 7/179 (3%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A D+  QM +  L P+  T  SIL AC+         +I+  I     + +     ++I+
Sbjct: 185 AADLFYQMQREGLKPNQNTFISILSACQSPIALEFGEQIHSRIAKAGYESDVNVSTALIN 244

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K    + A  + ++++E N++     + A+++GY +  D + AL + +++ ++ ++P
Sbjct: 245 MYCKCGSLELARKVFNEMRERNVVS----WTAMISGYVQHGDSREALALFRKLIRSGIQP 300

Query: 150 DSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           +  +F+ ++  C+N  D+   +K +  +K AG +    V  ALI+ Y+ CG    ARQV
Sbjct: 301 NKVSFASILGACTNPNDLGEGLKLHAYIKQAGLEQEVLVGNALISMYSRCGSLANARQV 359



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 117/245 (47%), Gaps = 13/245 (5%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL +  ++++  + P+  +  SIL AC    +     +++  I    L+       ++IS
Sbjct: 286 ALALFRKLIRSGIQPNKVSFASILGACTNPNDLGEGLKLHAYIKQAGLEQEVLVGNALIS 345

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  +     +A  + D+L+ +N     + +NA++AGY  +  ++ A  + + MEQ   +P
Sbjct: 346 MYSRCGSLANARQVFDNLRSLN----RTTWNAMIAGY-GEGLMEEAFRLFRAMEQKGFQP 400

Query: 150 DSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D  T++ L+  C++  D+ +  E   Q+ S G Q    V  ALI+ Y  CG  E+AR+V 
Sbjct: 401 DKFTYASLLAICADRADLDRGKELHSQIASTGWQTDLTVATALISMYAKCGSPEEARKVF 460

Query: 207 LDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
              ++P   R+ +  +A +S    H    +A   +++++    N +    I L+    S 
Sbjct: 461 --NQMP--ERNVISWNAFISCCCRHDLGKEAFQAFKQMRRDDVNPDHITFITLLNSCTSP 516

Query: 266 GELNR 270
            +L R
Sbjct: 517 EDLER 521



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 74/371 (19%), Positives = 163/371 (43%), Gaps = 33/371 (8%)

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           ++++  +     KP+      +IS+  K    + A ++   +++ +++     +NA+++G
Sbjct: 120 KKVHDHMRSAQFKPDIYLNNMLISMYSKCGSIEDANNVFQAMEDKDVVS----WNAMISG 175

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKS----AGGQI 181
           Y      Q A  +  +M++  +KP+  TF  ++  C +    +++ EQ+ S    AG + 
Sbjct: 176 YALHGRDQEAADLFYQMQREGLKPNQNTFISILSACQS-PIALEFGEQIHSRIAKAGYES 234

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVY 240
              V  ALIN Y  CG  E AR+V  +    ++ R+ V  +A++S    HG + +A+ ++
Sbjct: 235 DVNVSTALINMYCKCGSLELARKVFNE----MRERNVVSWTAMISGYVQHGDSREALALF 290

Query: 241 EEIKEAGCNLEPR-----AVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHC 295
            ++  +G  ++P      +++    + N  GE  +L   +++       + G   LI   
Sbjct: 291 RKLIRSG--IQPNKVSFASILGACTNPNDLGEGLKLHAYIKQAGLEQEVLVGNA-LISMY 347

Query: 296 VRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDEL 355
            R   L++A  +   L+   +    AM   + E   + A            L + ++ + 
Sbjct: 348 SRCGSLANARQVFDNLRSLNRTTWNAMIAGYGEGLMEEA----------FRLFRAMEQK- 396

Query: 356 GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSA 415
           G  P +     LL  C +  DL R   +  +  + G   ++     +   +   G+ + A
Sbjct: 397 GFQPDKFTYASLLAICADRADLDRGKELHSQIASTGWQTDLTVATALISMYAKCGSPEEA 456

Query: 416 SKLLSKMPKDD 426
            K+ ++MP+ +
Sbjct: 457 RKVFNQMPERN 467



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 97/223 (43%), Gaps = 14/223 (6%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A  +   M Q    P   T  S+L  C +  + +  + ++  I     + +     ++IS
Sbjct: 386 AFRLFRAMEQKGFQPDKFTYASLLAICADRADLDRGKELHSQIASTGWQTDLTVATALIS 445

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K    + A  + + + E N++     +NA ++   R    + A    K+M + +V P
Sbjct: 446 MYAKCGSPEEARKVFNQMPERNVIS----WNAFISCCCRHDLGKEAFQAFKQMRRDDVNP 501

Query: 150 DSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D  TF  L+++C++ ED+ +    + ++   G     +V  ALI+ Y  CG    AR+V 
Sbjct: 502 DHITFITLLNSCTSPEDLERGRYIHGKINQWGMLSNNHVANALISMYGRCGNLADAREVF 561

Query: 207 LDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEIKEAG 247
                    R ++ S  A+++A   HG    A  ++ + +  G
Sbjct: 562 YRIR-----RRDLGSWNAMIAANVQHGANGSAFDLFRKYRSEG 599



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 100/234 (42%), Gaps = 10/234 (4%)

Query: 48  TINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL 107
           T  ++L A     + +  R I+ ++       +     ++I +  K      A ++   +
Sbjct: 606 TFINVLRAVANLEDLDAGRMIHGLVEKGGFGKDIRVLTTLIKMYSKCGSLRDAENVFSTV 665

Query: 108 KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---E 164
           +E +++     +NA++A Y      Q AL + ++M+   V PDS T+S  ++ C+     
Sbjct: 666 QEKDVV----CWNAMLAAYAHSDRGQDALKLFQQMQLEGVNPDSSTYSTALNACARLTAV 721

Query: 165 EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALV 224
           E   K + QLK AG +    V  +LI  Y+ CG    A+QV    E  +       +AL+
Sbjct: 722 EHGKKIHAQLKEAGMETDTRVSNSLIEMYSRCGCLCSAKQVF---EKMLSRDINSWNALI 778

Query: 225 SALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           +    +G+ + A+  YE +  A          +++      GE  +    LE +
Sbjct: 779 AGYCQNGQGNIALEYYELMLRASIVPNKATFTSILSSYAQLGEEEQAFDFLESI 832



 Score = 38.5 bits (88), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 31/149 (20%), Positives = 68/149 (45%), Gaps = 7/149 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL + +QM    + P + T ++ L+AC         ++I+  +    ++ ++    S+I 
Sbjct: 689 ALKLFQQMQLEGVNPDSSTYSTALNACARLTAVEHGKKIHAQLKEAGMETDTRVSNSLIE 748

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  +     SA  + + +    L    + +NA++AGY +      AL   + M +A++ P
Sbjct: 749 MYSRCGCLCSAKQVFEKM----LSRDINSWNALIAGYCQNGQGNIALEYYELMLRASIVP 804

Query: 150 DSQTFSYLIHN---CSNEEDIIKYYEQLK 175
           +  TF+ ++ +      EE    + E +K
Sbjct: 805 NKATFTSILSSYAQLGEEEQAFDFLESIK 833


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 106/209 (50%), Gaps = 7/209 (3%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEES 59
           +H +L   P   +Y  LI   C    +  A ++ + M   E+ P+  T + ++ + CE+ 
Sbjct: 429 LHQRLR--PDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKG 486

Query: 60  YEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMY 119
                   +  M+   NL PN  T+ S+I    +  +       L  + + N++P    +
Sbjct: 487 QVEEAFGFLDEMVSKGNL-PNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITF 545

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS---NEEDIIKYYEQLKS 176
           N ++ GY +++++ GA  V   ME+  V+PD+ T++ +I+  S   N E+  + ++++ +
Sbjct: 546 NTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGA 605

Query: 177 AGGQITKYVFMALINAYTTCGEFEKARQV 205
           +G +  +Y +M+LIN + T G  ++A Q+
Sbjct: 606 SGIEPDRYTYMSLINGHVTAGNSKEAFQL 634



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 89/411 (21%), Positives = 162/411 (39%), Gaps = 47/411 (11%)

Query: 22  CDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNS 81
           C  L+   A  V+ +M +  + P   T N ++ A   + + +    +   + +  LKP  
Sbjct: 168 CKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANKGLKPGI 227

Query: 82  ETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKE 141
            TF S++    K + FD A  +   + + ++ P    +N ++ G+ R  +V+ A+   KE
Sbjct: 228 VTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKE 287

Query: 142 MEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGE 198
           M+Q  V PD  +FS LI   S     +    Y  ++K  G      ++  +I  +   G 
Sbjct: 288 MQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGS 347

Query: 199 FEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI 256
             +A + V D  + +    +V +   L++ L    R  DA  +  E+KE G   +     
Sbjct: 348 MSEALR-VRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFT 406

Query: 257 ALIEHLNSEGELNRLIQLLEE-VHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKF 315
            LI     +G   + +QL +  +H          RL    V +  L    D + +  D  
Sbjct: 407 TLIHGYCRDGNFEKALQLFDTLLHQ---------RLRPDVVAYNSL---IDGMCRKGDLA 454

Query: 316 KDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNAR 375
           K +E+  + H  EIF                            P+      L+ +     
Sbjct: 455 KANELWDDMHAREIF----------------------------PNHVTYSILIDSHCEKG 486

Query: 376 DLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDD 426
            ++ A     E  + G   N+++Y  + K +  SGN K   + L KM +D+
Sbjct: 487 QVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDN 537



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/426 (18%), Positives = 162/426 (38%), Gaps = 47/426 (11%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           A   + P   ++  ++   C   +   A +V   M Q  + P   + N ++       E 
Sbjct: 219 ANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEV 278

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
               + Y  +    + P+  +F  +I L       D A + L ++K + L+P   +Y  +
Sbjct: 279 EEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMV 338

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGG 179
           + G+ R   +  AL V  EM      PD  T++ L++    +  ++   E   ++K  G 
Sbjct: 339 IGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGV 398

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
                 F  LI+ Y   G FEKA Q + D  +                  H R    ++ 
Sbjct: 399 TPDLCTFTTLIHGYCRDGNFEKALQ-LFDTLL------------------HQRLRPDVVA 439

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL---HCV 296
           Y                +LI+ +  +G+L +  +L +++H  + + +     IL   HC 
Sbjct: 440 YN---------------SLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCE 484

Query: 297 RFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELG 356
           +  Q+  A   L ++  K     +       + +C+       +V+ G   LQ +  +  
Sbjct: 485 K-GQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSG-----NVKKGQQFLQKMMQD-N 537

Query: 357 LPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSAS 416
           + P     + L+   +   ++  A  ++   E   +  + ++Y  +   F   GN + A 
Sbjct: 538 ILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAG 597

Query: 417 KLLSKM 422
           ++  KM
Sbjct: 598 RVFKKM 603


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 133/321 (41%), Gaps = 17/321 (5%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  + P++ S+  LI   C    +     + + M +  + P   T + ++H   +    +
Sbjct: 251 KRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLD 310

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
           +  +++  +    L+PN  TF ++I    + +  DSA +    +  M + P   MYN ++
Sbjct: 311 VAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLL 370

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQ 180
            G  +  DV  A  ++ EM+   +KPD  T++ LI     E D+   ++  + +   G  
Sbjct: 371 NGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVV 430

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
           +    F ALI+ +   G    A + + +  E  +K      + ++      G      + 
Sbjct: 431 LDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVK---MG 487

Query: 240 YEEIKEAGCNLEPRAVIA---LIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL--- 293
           ++ +KE   N     VI    L+  L  +G++     LLE + +     D     IL   
Sbjct: 488 FKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEG 547

Query: 294 HCVRFKQLSSATDLLKQLKDK 314
           HC   K    A DLLK   +K
Sbjct: 548 HCKNGK----AEDLLKLRNEK 564



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 107/236 (45%), Gaps = 13/236 (5%)

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           I+  I    L+P + +F ++I+   K ++ D  + L   ++E  + P    Y+ ++ G  
Sbjct: 245 IFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLC 304

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITKY 184
           ++  +  A  +  EM+Q  ++P+  TF+ LI   +     +  +  Y Q+ + G +    
Sbjct: 305 KEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLV 364

Query: 185 VFMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
           ++  L+N     G+  KAR++V + + + +K      + L+      G    A+ + + +
Sbjct: 365 MYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGM 424

Query: 244 KEAGCNLEPRAVIALIEHLNSEGEL----NRLIQLLEEVHDPD---YWM--DGCCR 290
            E G  L+  A  ALI     +G +      L +++E    PD   Y M  DG C+
Sbjct: 425 NEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCK 480



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/357 (18%), Positives = 149/357 (41%), Gaps = 12/357 (3%)

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
            Y  I  +   P  + +  +I+   K      A  + +++++  L PT   +N ++ G  
Sbjct: 210 FYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLC 269

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE--DII-KYYEQLKSAGGQITKY 184
           + +++     + K ME+  + PD  T+S LIH    E   D+  + +++++  G +    
Sbjct: 270 KSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGI 329

Query: 185 VFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
            F ALI+        + A         + VK    + + L++ L   G  + A  + +E+
Sbjct: 330 TFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEM 389

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQL 301
           K  G   +      LI+    EG+L   +++ + +++    +D      LI    R  ++
Sbjct: 390 KMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRV 449

Query: 302 SSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSR 361
             A   L+++ +     + A      + +C+       +V++G  LL+ ++   G  P  
Sbjct: 450 RDAERTLREMVEAGMKPDDATYTMVIDGYCKKG-----NVKMGFKLLKEMQIN-GHKPGV 503

Query: 362 KCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKL 418
              + L+        +K A+++ +   N G+  + ++Y  + +    +G  +   KL
Sbjct: 504 ITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGKAEDLLKL 560


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 105/223 (47%), Gaps = 10/223 (4%)

Query: 28  HVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSM 87
           ++A  +  +++   L+P   T +S+L AC  S        ++       L  N     ++
Sbjct: 112 YLAFSLFGELLCSGLLPDDYTFSSLLKACASSKALREGMGLHCFAVKLGLNHNIYICPTL 171

Query: 88  ISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANV 147
           I++  +  D ++A  + D++++    P    YNAI+ GY R      AL + +E++ +N+
Sbjct: 172 INMYAECNDMNAARGVFDEMEQ----PCIVSYNAIITGYARSSQPNEALSLFRELQASNI 227

Query: 148 KPDSQTFSYLIHNCS--NEEDIIKY-YEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204
           +P   T   +I +C+     D+ K+ +E +K  G      V  ALI+ +  CG    A  
Sbjct: 228 EPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAIS 287

Query: 205 VVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           +     +     ++  SA++ A A+HG    AI ++EE+K  G
Sbjct: 288 IFEGMRV---RDTQAWSAMIVAFATHGDGLKAISMFEEMKREG 327



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/241 (20%), Positives = 103/241 (42%), Gaps = 10/241 (4%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   SY  +IT      + + AL +  ++    + P+  T+ S++ +C      +L + I
Sbjct: 194 PCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWI 253

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +         +   ++I +  K      A S+ + ++    +     ++A++  +  
Sbjct: 254 HEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMR----VRDTQAWSAMIVAFAT 309

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN----EEDIIKYYEQLKSAGGQITKY 184
             D   A+ + +EM++  V+PD  TF  L++ CS+    E+    +Y   K+ G      
Sbjct: 310 HGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIK 369

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
            +  +++     G  ++A   V   EI  K+   +   L+SA ++HG    A  V E I 
Sbjct: 370 HYGCMVDLLGRAGHLDEAYNFVDKLEI--KATPILWRTLLSACSTHGNVEMAKRVIERIF 427

Query: 245 E 245
           E
Sbjct: 428 E 428



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 93/214 (43%), Gaps = 18/214 (8%)

Query: 51  SILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI---SLNVKIKDFDSAYSLLDDL 107
           S+L  C      N +++I       NL+ +      +I   +LN      D A+ L D +
Sbjct: 34  SLLSKCTS---LNELKQIQAYTIKTNLQSDISVLTKLINFCTLNPTTSYMDHAHHLFDQI 90

Query: 108 KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI 167
            + +++    ++N +  GY R      A  +  E+  + + PD  TFS L+  C++ + +
Sbjct: 91  LDKDII----LFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSKAL 146

Query: 168 ---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALV 224
              +  +      G     Y+   LIN Y  C +   AR V  + E P        +A++
Sbjct: 147 REGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVS---YNAII 203

Query: 225 SALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
           +  A   + ++A+ ++ E++ +  N+EP  V  L
Sbjct: 204 TGYARSSQPNEALSLFRELQAS--NIEPTDVTML 235


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 89/408 (21%), Positives = 164/408 (40%), Gaps = 26/408 (6%)

Query: 28  HVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSM 87
           H+A D    +       +T T+N ++H   ++ EF+ V  +   +    + P+  T   M
Sbjct: 77  HLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVM 136

Query: 88  ISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANV 147
           +    +  D ++A +L+D +    L P    YN+++ G  R      A  V KEM+   V
Sbjct: 137 VDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGV 196

Query: 148 KPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA-- 202
            PD ++F+ LI         E+ +K Y++++  G +     F  LI  +   G+ + A  
Sbjct: 197 APDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMA 256

Query: 203 --RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE 260
             R++     +P      + + ++      G  SDA+ V +E+   GC  +      L+ 
Sbjct: 257 YLREMRCFGLVP---DGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLN 313

Query: 261 HLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL---HCVRFKQLSSATDLLKQLKDKFKD 317
            L  E  L     LL E+ +     D C    L   +C+  K L  A  L   + ++   
Sbjct: 314 GLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGK-LDKALQLFDTMLNQRLR 372

Query: 318 DEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELG---LPPSRKCLDFLLGACVNA 374
            ++       +  C+         Q  LD    + D++    + P+      L+ +    
Sbjct: 373 PDIVTYNTLIDGMCR---------QGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEK 423

Query: 375 RDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
             ++ A     E  N G+  N+++Y  + K +  SGN     K L KM
Sbjct: 424 GQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKM 471



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/274 (20%), Positives = 116/274 (42%), Gaps = 10/274 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   ++  LI   C   K+  AL + + M+   L P   T N+++       + +   
Sbjct: 336 VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKAN 395

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +    + PN  T+  +I  + +    + A+  LD++    ++P    YN+I+ GY
Sbjct: 396 DLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGY 455

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQITK 183
            R  +V      L++M    V PD  T++ LIH    E+   D  K    ++    Q   
Sbjct: 456 CRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDV 515

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASH---GRTSDAIIVY 240
             +  LIN ++  G  ++A  +    ++  K     +   +S +  H   G + +A  ++
Sbjct: 516 VTYNMLINGFSVHGNVQEAGWIF--EKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLH 573

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQL 274
           +E+ + G   E R     ++ +N +     L Q+
Sbjct: 574 DEMLQRG--KEKRRAAGTVQFVNIQNSAESLKQM 605



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 91/208 (43%), Gaps = 39/208 (18%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           MH++ EI P+  +Y  LI   C+  +V  A   +++M+   ++P+  T NSI+       
Sbjct: 401 MHSR-EIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKG----- 454

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
                       C        + F   + +N                    + P    YN
Sbjct: 455 -----------YCRSGNVSKGQKFLQKMMVN-------------------KVSPDLITYN 484

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS---NEEDIIKYYEQLKSA 177
            ++ GY ++  +  A  +L  ME+  V+PD  T++ LI+  S   N ++    +E++ + 
Sbjct: 485 TLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAK 544

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQV 205
           G +  +Y +M++IN + T G  ++A Q+
Sbjct: 545 GIEPDRYTYMSMINGHVTAGNSKEAFQL 572



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/242 (19%), Positives = 101/242 (41%), Gaps = 6/242 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  ++   C       A +V ++M    + P   +   ++       E     
Sbjct: 161 LKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEAL 220

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +IY  + H  +KP+  +F  +I L  +    D A + L +++   L+P   +Y  ++ G+
Sbjct: 221 KIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGF 280

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITK 183
            R   +  AL V  EM      PD  T++ L++    E  ++       +++  G     
Sbjct: 281 CRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDL 340

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYE 241
             F  LI+ Y   G+ +KA Q + D  +  + R ++ +   L+  +   G    A  +++
Sbjct: 341 CTFTTLIHGYCIEGKLDKALQ-LFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWD 399

Query: 242 EI 243
           ++
Sbjct: 400 DM 401


>gi|359489321|ref|XP_002269223.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 889

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/274 (21%), Positives = 119/274 (43%), Gaps = 4/274 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   ++  +I   C    +H+   ++  M +    P+    N +++AC      +     
Sbjct: 264 PCKYTFSGIILGFCRKGCIHLGESLLHLMPKFHCEPNAFAYNIVINACCIRGRTSDALAW 323

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           + ++      P   TF ++I+   K  +   A  L D LKEM   P A MYN +M GY +
Sbjct: 324 FNLMIERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVK 383

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITKYV 185
            +++  A M+ +EM +  + PD  TF+ L+   +    EED  +  + +   G    + +
Sbjct: 384 MREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSL 443

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIK 244
           F   ++     G  ++A + ++D      S S +  +++++A +  G    A   Y+ + 
Sbjct: 444 FDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMV 503

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
             G    P    +L+  L+  G L    +L+ ++
Sbjct: 504 HFGLTPSPSTCSSLLMGLSINGRLQEATELIGQM 537



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 72/430 (16%), Positives = 183/430 (42%), Gaps = 22/430 (5%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEF 62
           K    P++ +Y  +I   C   +   AL     M++    P+  T N++++A C+E    
Sbjct: 294 KFHCEPNAFAYNIVINACCIRGRTSDALAWFNLMIERGCNPTVVTFNTVINAFCKEG--- 350

Query: 63  NLV--RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           N+V  R+++  +      PN+  + ++++  VK+++ D A  L +++++  + P    +N
Sbjct: 351 NVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDGITFN 410

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSA 177
            +++G+++    +    +LK++    + PD   F   +         ++ +++   +   
Sbjct: 411 ILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEK 470

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDA 236
           G   +   F ++I AY+  G  +KA +   L     +       S+L+  L+ +GR  +A
Sbjct: 471 GLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQEA 530

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCV 296
             +  ++ E G ++   A   L++     G++     L  E+     + D     ++   
Sbjct: 531 TELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFPD-----VVAFS 585

Query: 297 RFKQLSSATDLLKQLKDKF----KDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIK 352
            F    S   L+++  + F    +   +   + ++ + C        +  + L+    + 
Sbjct: 586 AFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKLEK---VM 642

Query: 353 DELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNR 412
              GL P     + ++G       ++ A  ++ +    GL  ++++Y  +   +  + + 
Sbjct: 643 RHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDM 702

Query: 413 KSASKLLSKM 422
            +A  L+++M
Sbjct: 703 VNADNLVNRM 712



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 81/189 (42%), Gaps = 3/189 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P   ++   I        V  A +V  +M++  L+P+    NS++    +  + N   
Sbjct: 577 IFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEAL 636

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           ++  ++ H  L P+  T   +I    K     SA ++  D+ +  L P    YN ++ GY
Sbjct: 637 KLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGY 696

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE--DIIKYYEQLKSAGGQITK 183
            +  D+  A  ++  M  +   PD  T++  IH  CS+      +   ++L SAG     
Sbjct: 697 CKAFDMVNADNLVNRMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLMLDELVSAGIVPNT 756

Query: 184 YVFMALINA 192
             + +++N 
Sbjct: 757 VTYNSMLNG 765


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/415 (16%), Positives = 182/415 (43%), Gaps = 12/415 (2%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           +++  +P+S +   LI   C L +V  AL  ++Q +     P   T ++ ++   ++   
Sbjct: 258 SEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHV 317

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           +   ++  ++     +P+  T+ ++I+      + + A  +++ + +   +P  + +N +
Sbjct: 318 DHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTL 377

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKYYEQLKSAGG 179
           +     +  ++ AL + +E+    + P+  TF+ LI+      D    ++ +E++KS+G 
Sbjct: 378 IVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGC 437

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAII 238
              +  +  LI+   + G+  KA  ++ + E+    +S V  + ++  L    R  +A  
Sbjct: 438 TPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEE 497

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCV 296
           V++++   G          LI+ L +   ++   +L++++       +      ++ H  
Sbjct: 498 VFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYC 557

Query: 297 RFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELG 356
           +   +S A D+L+ +     + ++          C+   T     Q  L LL+ ++ + G
Sbjct: 558 KQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRT-----QAALKLLRGMRMK-G 611

Query: 357 LPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGN 411
           + P+ K  + ++ +     + + A  +++E    G P +  +Y  +++     G 
Sbjct: 612 MKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAFTYKIVFRGLCRGGG 666



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 100/457 (21%), Positives = 179/457 (39%), Gaps = 53/457 (11%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P   ++  +I   C   +   A+ ++E+M   ++ P   T  +++    E        
Sbjct: 192 IEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAAL 251

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R+   +      P S T   +I+   K+     A   +         P    ++  + G 
Sbjct: 252 RLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGL 311

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITK 183
            +   V  AL VL  M Q   +PD  T+S +I+  C+N   E+      Q+  +G     
Sbjct: 312 CQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDT 371

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE---VKSALVSALASHGRTSDAIIVY 240
             F  LI A  T  + E+A  + L  E+ VK  S      + L++AL   G    A+ ++
Sbjct: 372 TTFNTLIVALCTENQLEEA--LDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLF 429

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQ 300
           EE+K +GC  +      LI++L S G+L + + LL+E+      + GC +  +       
Sbjct: 430 EEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEME-----VSGCPQSTV------- 477

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS 360
             +   ++  L  + + +E        E+F Q+  T      IG + + F          
Sbjct: 478 --TYNTIIDGLCKRRRIEEA------EEVFDQMDVTG-----IGRNAITF---------- 514

Query: 361 RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420
               + L+    NA  +  A  +  +  + GL  N ++Y  +   +   GN   A+ +L 
Sbjct: 515 ----NTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQ 570

Query: 421 KMPKDDPHVRFVIQA------CKQTYTIPSLQKERGF 451
            M  +   V  V  A      CK   T  +L+  RG 
Sbjct: 571 TMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGM 607



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 142/350 (40%), Gaps = 27/350 (7%)

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISL---NVKIKDFDSAYSLLDDLKEMNLMPTASM 118
           F+LV     M     ++ N+E +  ++++     KIK  +SAY+   ++    + P    
Sbjct: 145 FDLVSNQLDMF---GVQANTEVYNHLLTVLAEGSKIKLLESAYT---EMSSQGIEPDVVT 198

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLK 175
           +N ++    R +  + A+++L+EM   +V PD  TF+ L+     E  I   ++   ++ 
Sbjct: 199 FNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMS 258

Query: 176 SAGGQITKYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHG 231
             G   T      LIN Y   G    A    +Q + D   P +      S  V+ L  +G
Sbjct: 259 EMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRV---TFSTFVNGLCQNG 315

Query: 232 RTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC-- 289
               A+ V   + + GC  +      +I  L + GEL     ++ ++ D     D     
Sbjct: 316 HVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFN 375

Query: 290 RLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQ 349
            LI+      QL  A DL ++L  K     +          C++      D  + + L +
Sbjct: 376 TLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVG-----DPHLAVRLFE 430

Query: 350 FIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSY 399
            +K   G  P     + L+    ++  L +A  + KE E +G P + ++Y
Sbjct: 431 EMKSS-GCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTY 479



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/238 (19%), Positives = 104/238 (43%), Gaps = 4/238 (1%)

Query: 45  STETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLL 104
           +TE  N +L    E  +  L+   Y  +    ++P+  TF ++I    + +   +A  +L
Sbjct: 160 NTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTAVLML 219

Query: 105 DDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---C 161
           +++   ++ P  + +  +M G+  +  ++ AL +   M +    P S T + LI+     
Sbjct: 220 EEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKL 279

Query: 162 SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVK 220
               D + Y +Q  + G +  +  F   +N     G  + A +V+ L  +   +      
Sbjct: 280 GRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTY 339

Query: 221 SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           S +++ L ++G   +A  +  ++ ++GC  +      LI  L +E +L   + L  E+
Sbjct: 340 STVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLAREL 397


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 113/241 (46%), Gaps = 12/241 (4%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   ++  LI   C  LK+  AL +VE+M +  + P T T NS+L+   ++ + N V   
Sbjct: 431 PDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNET 490

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +      PN  T+  +I    +    + A  ++  + +  L P A  +N ++ G+ R
Sbjct: 491 FQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCR 550

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYV 185
             D++GA ++ +++E+      + TF+ LI   S + ++    K ++++ S G +   Y 
Sbjct: 551 NGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYT 610

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
           +  LI+        ++A   +++          +K   + ++++ GR  +++ V   + +
Sbjct: 611 YRVLIDGSCKTANVDRAYMHLVEM---------IKKGFIPSMSTFGRVINSLTVNHRVFQ 661

Query: 246 A 246
           A
Sbjct: 662 A 662



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 89/449 (19%), Positives = 173/449 (38%), Gaps = 61/449 (13%)

Query: 28  HVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSM 87
           H A  + +QM+   + P+    N +LHA  +  +      +   +    +  N  T+   
Sbjct: 171 HDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIW 230

Query: 88  ISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANV 147
           I    +      A  L+D ++   + P    YN ++ G  +K   Q A+  L+ M     
Sbjct: 231 IRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGC 289

Query: 148 KPDSQTFSYLIHNCSNEEDIIKYYEQLKSA---GGQITKYVFMALINAYTTCGEFEKARQ 204
            PD  T++ +I        + +  E LK A   G    +  + +LIN     G+ E+A +
Sbjct: 290 LPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALE 349

Query: 205 VVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
           +  +A+   +K    V ++LV  L   G    A+ V  E+ E GC+              
Sbjct: 350 LFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCH-------------- 395

Query: 264 SEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAME 323
                        ++   +  ++G C++         +S AT ++         ++  M+
Sbjct: 396 ------------PDIQTYNIVINGLCKM-------GNISDATVVM---------NDAIMK 427

Query: 324 YHFSEIFCQIATTDPPDVQIGLD-LLQFIKD--ELGLPPSRKCLDFLLGACVNARDLKRA 380
            +  ++F      D    ++ LD  LQ ++   E G+ P     + +L     A  +   
Sbjct: 428 GYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEV 487

Query: 381 HLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPH---VRF---VIQ 434
           +  ++E    G   N ++Y  + + F  S   + ASK++ KM ++  H   V F   +  
Sbjct: 488 NETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYG 547

Query: 435 ACKQ-----TYTIPSLQKERGFEKDRDTL 458
            C+       Y +    +E+G+    DT 
Sbjct: 548 FCRNGDLEGAYLLFQKLEEKGYSATADTF 576



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 65/319 (20%), Positives = 134/319 (42%), Gaps = 18/319 (5%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY-EFNLVR 66
            P   +Y  LI   C       A+  + +M+    +P   T N+I+    + Y + ++V+
Sbjct: 255 VPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTII----DGYCKISMVQ 310

Query: 67  RIYPMI---CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               ++         P+  T+ S+I+      D + A  L ++ +   + P   +YN+++
Sbjct: 311 EATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLV 370

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA---GGQ 180
            G   +  +  AL V+ EM +    PD QT++ +I+      +I      +  A   G  
Sbjct: 371 KGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYL 430

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIV 239
              + F  LI+ Y    + + A Q+V    E  +   +   +++++ L   G+ ++    
Sbjct: 431 PDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNET 490

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNR----LIQLLEEVHDPDYWMDGCCRLILHC 295
           ++E+   GC+  P     LIE+     ++      ++++ +E   PD        LI   
Sbjct: 491 FQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFN--TLIYGF 548

Query: 296 VRFKQLSSATDLLKQLKDK 314
            R   L  A  L ++L++K
Sbjct: 549 CRNGDLEGAYLLFQKLEEK 567


>gi|357124808|ref|XP_003564089.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Brachypodium distachyon]
          Length = 502

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/276 (20%), Positives = 129/276 (46%), Gaps = 5/276 (1%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGE-LVPSTETINSILHACEESYEFNL 64
           ++ P+  +Y  LI   C   K+  A ++ E+M++ + +VP   T N I++      + + 
Sbjct: 221 DVRPNLVTYSTLIGGLCRAGKMKEAFELFEEMIEKDHIVPDQLTYNVIINGFCRLGQVDK 280

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
            R I+  +  +  +PN+  + ++++ + +  + ++   + +++K   + P A  Y A++ 
Sbjct: 281 ARTIFGFMRKNECEPNAFNYATLMNGHSRKGELENLRMVFEEMKSAGVEPDAVSYTALIG 340

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKS---AGGQI 181
              R   V   + +++EM +   K D  T++ LI     ++ +++  + L+S    G Q+
Sbjct: 341 CLCRHGSVDEGIDLVREMREKGCKADVVTYNLLIEGLCKDKRMVEAMDLLRSLPLEGVQL 400

Query: 182 TKYVFMALINAYTTCGEFEKA-RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
               +  ++N+  +CG+ EKA   + L             + L+  L   GR +DA +  
Sbjct: 401 NVASYRIVMNSLCSCGDMEKAVGLLGLMLGRGFLPHYAASNDLLIGLCGVGRVADATVAL 460

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276
             +   G   +      L+E +  + +L R ++LL+
Sbjct: 461 YGLASVGFKPDTSCWGKLVEAVCRDRKLRRSVELLD 496



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 98/208 (47%), Gaps = 8/208 (3%)

Query: 79  PNSETFRSMISLNVKIKDFDSAYSLLDDLKEM---NLMPTASMYNAIMAGYFRKKDVQGA 135
           PN+  +  +I   VK  D ++A+ +LD+++E    ++ P    Y+ ++ G  R   ++ A
Sbjct: 186 PNTCVYNILIKHYVKNGDSETAFRVLDEMREYTCGDVRPNLVTYSTLIGGLCRAGKMKEA 245

Query: 136 LMVLKEM-EQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALIN 191
             + +EM E+ ++ PD  T++ +I+       + K    +  ++    +   + +  L+N
Sbjct: 246 FELFEEMIEKDHIVPDQLTYNVIINGFCRLGQVDKARTIFGFMRKNECEPNAFNYATLMN 305

Query: 192 AYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNL 250
            ++  GE E  R V  + +   V+  +   +AL+  L  HG   + I +  E++E GC  
Sbjct: 306 GHSRKGELENLRMVFEEMKSAGVEPDAVSYTALIGCLCRHGSVDEGIDLVREMREKGCKA 365

Query: 251 EPRAVIALIEHLNSEGELNRLIQLLEEV 278
           +      LIE L  +  +   + LL  +
Sbjct: 366 DVVTYNLLIEGLCKDKRMVEAMDLLRSL 393



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 97/213 (45%), Gaps = 20/213 (9%)

Query: 114 PTASMYNAIMAGYFRKKDVQGALMVLKEMEQ---ANVKPDSQTFSYLIHN---CSNEEDI 167
           P   +YN ++  Y +  D + A  VL EM +    +V+P+  T+S LI         ++ 
Sbjct: 186 PNTCVYNILIKHYVKNGDSETAFRVLDEMREYTCGDVRPNLVTYSTLIGGLCRAGKMKEA 245

Query: 168 IKYYEQLKSAGGQIT-KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS----A 222
            + +E++      +  +  +  +IN +   G+ +KAR +        K+  E  +     
Sbjct: 246 FELFEEMIEKDHIVPDQLTYNVIINGFCRLGQVDKARTIF---GFMRKNECEPNAFNYAT 302

Query: 223 LVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV--IALIEHLNSEGELNRLIQLLEEVHD 280
           L++  +  G   +  +V+EE+K AG  +EP AV   ALI  L   G ++  I L+ E+ +
Sbjct: 303 LMNGHSRKGELENLRMVFEEMKSAG--VEPDAVSYTALIGCLCRHGSVDEGIDLVREMRE 360

Query: 281 PDYWMDGCCR--LILHCVRFKQLSSATDLLKQL 311
                D      LI    + K++  A DLL+ L
Sbjct: 361 KGCKADVVTYNLLIEGLCKDKRMVEAMDLLRSL 393


>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 817

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 114/246 (46%), Gaps = 6/246 (2%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y K I  +  L  + + ++ ++ M +  + P+    N ++             +++  +C
Sbjct: 179 YAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDAEKMFDEMC 238

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
           + NL  +  T+ ++I    K+ + D+A+ + + +KE ++ P    +N++++G  + + ++
Sbjct: 239 NINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMK 298

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALI 190
            A  +LKEME     PD  T+S L      C +    ++ YEQ    G +I  Y    L+
Sbjct: 299 EARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIRINNYTGSILL 358

Query: 191 NAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
           N     G+ EKA +++    E  + +   + +  V+     G  + AI+  E ++  G  
Sbjct: 359 NGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFG-- 416

Query: 250 LEPRAV 255
           L P ++
Sbjct: 417 LRPNSI 422



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/277 (20%), Positives = 125/277 (45%), Gaps = 9/277 (3%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y   +   C +  ++ A+  +E+M    L P++ T NS++    +  E +        + 
Sbjct: 389 YNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMA 448

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
              + P+ ET+ ++I    K+  FD  + +L+ ++E+ + P    Y +++    +   + 
Sbjct: 449 EKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKIL 508

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALI 190
            A +VL++M    V P++Q ++ LI         +D +++++++  +    T   +  LI
Sbjct: 509 EAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLI 568

Query: 191 NAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCN 249
           +     G+  +A   +        S   +  ++L+S  A+ G  S  + +YE +K  G  
Sbjct: 569 DGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIK 628

Query: 250 LEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
              R    LI   + EG     I+L+E++++    M+
Sbjct: 629 PTVRTYHPLISGCSKEG-----IELVEKLYNEMLQMN 660



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 137/316 (43%), Gaps = 11/316 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+S ++  LI   CD+ ++  A + V++M +  + PS ET N+++    +   F+   
Sbjct: 417 LRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCF 476

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +I   +    +KPN  ++ S+I+   K      A  +L D+    ++P A +YN ++ G 
Sbjct: 477 QILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGS 536

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITK 183
                V+ AL    EM ++ + P   T++ LI     +  + +   +  Q+ S+G     
Sbjct: 537 CMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDV 596

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             + +LI+ Y   G   K   +    + + +K        L+S  +  G       +Y E
Sbjct: 597 ITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSKEG-IELVEKLYNE 655

Query: 243 IKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRF 298
           + +   NL P  V+  A+I      G   +   L + + D     D      LIL   R 
Sbjct: 656 MLQM--NLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFRE 713

Query: 299 KQLSSATDLLKQLKDK 314
            +LS+  DL+  +K K
Sbjct: 714 GKLSNIKDLVNNMKAK 729



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/281 (20%), Positives = 119/281 (42%), Gaps = 4/281 (1%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  + P+   Y  LI   C   ++  A  + ++M    LV S  T N+++    +  E +
Sbjct: 204 KRGVRPNVFIYNVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELD 263

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              ++   +   ++ PN  TF S++S   K++    A SLL +++    MP    Y+ + 
Sbjct: 264 AAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILF 323

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK--SAGGQI 181
            G  R  D  GA+ + ++  +  ++ ++ T S L++    +  + K  E LK  +  G +
Sbjct: 324 DGLLRCDDGNGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLV 383

Query: 182 T-KYVFMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIV 239
             + ++   +N Y   G+  KA   +   E   ++  S   ++L+           A   
Sbjct: 384 ADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEW 443

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
            +++ E G          LI+        +R  Q+LE++ +
Sbjct: 444 VKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEE 484



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 127/284 (44%), Gaps = 13/284 (4%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEES-- 59
           A+  +TPS  +Y  LI     L        ++EQM +  + P+  +  S+++  C++   
Sbjct: 448 AEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKI 507

Query: 60  YEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMY 119
            E  +V R   MIC   L PN++ +  +I  +  +     A    D++    + PT   Y
Sbjct: 508 LEAEIVLR--DMICRGVL-PNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTY 564

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKS 176
           N ++ G  +K  +  A   L ++  +   PD  T++ LI   +N  ++ K    YE +K+
Sbjct: 565 NVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKN 624

Query: 177 AGGQITKYVFMALINAYTTCG--EFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTS 234
            G + T   +  LI+  +  G    EK    +L  ++ +     V +A++   A  G T 
Sbjct: 625 LGIKPTVRTYHPLISGCSKEGIELVEKLYNEML--QMNLLPDRVVYNAMIHCYAEIGNTQ 682

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            A  +++ + + G + +     +LI     EG+L+ +  L+  +
Sbjct: 683 KAYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNM 726



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 69/151 (45%), Gaps = 1/151 (0%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           +P   +Y  LI+   +   V   L + E M    + P+  T + ++  C +     LV +
Sbjct: 593 SPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSKE-GIELVEK 651

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +Y  +   NL P+   + +MI    +I +   AYSL   + +  + P    YN+++ G+F
Sbjct: 652 LYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHF 711

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
           R+  +     ++  M+   + P + T+  L+
Sbjct: 712 REGKLSNIKDLVNNMKAKELAPKADTYDILV 742



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 109/252 (43%), Gaps = 17/252 (6%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           EI+P+  +Y  LI   C   K+  A D + Q+      P   T NS++     +   +  
Sbjct: 556 EISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKC 615

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +Y  + +  +KP   T+  +IS   K +  +    L +++ +MNL+P   +YNA++  
Sbjct: 616 LGLYETMKNLGIKPTVRTYHPLISGCSK-EGIELVEKLYNEMLQMNLLPDRVVYNAMIHC 674

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI------HNCSNEEDIIKYYEQLKSAGG 179
           Y    + Q A  + + M    + PD  T++ LI         SN +D++   +  + A  
Sbjct: 675 YAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKELAPK 734

Query: 180 QITKYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSD 235
             T   +  L+  +    +F  A    R++V +  +P    + + + L + L   GR  +
Sbjct: 735 ADT---YDILVKGHCDLKDFSGAYVWYREMVENNFLP---NASICNELTAGLEQEGRLQE 788

Query: 236 AIIVYEEIKEAG 247
             ++  E+   G
Sbjct: 789 VQVICSEMNVKG 800



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 68/147 (46%), Gaps = 1/147 (0%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           L I P+  +Y  LI+  C    + +   +  +M+Q  L+P     N+++H   E      
Sbjct: 625 LGIKPTVRTYHPLIS-GCSKEGIELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQK 683

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
              ++  +    + P+  T+ S+I  + +     +   L++++K   L P A  Y+ ++ 
Sbjct: 684 AYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKELAPKADTYDILVK 743

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDS 151
           G+   KD  GA +  +EM + N  P++
Sbjct: 744 GHCDLKDFSGAYVWYREMVENNFLPNA 770



 Score = 45.1 bits (105), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 74/385 (19%), Positives = 148/385 (38%), Gaps = 46/385 (11%)

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           +F  V  ++  I +   + ++  +   I   VK+++       LD +++  + P   +YN
Sbjct: 156 QFVKVVDLFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYN 215

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE--DIIKYYEQLKSA 177
            ++ G  R+K ++ A  +  EM   N+     T++ LI   C   E     K  E++K  
Sbjct: 216 VLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEK 275

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDA 236
                   F +L++      + ++AR ++ + E+          S L   L      + A
Sbjct: 276 SVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGA 335

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDP---------DYWMDG 287
           + +YE+  E G  +       L+  L  +G++ +  ++L++  +          + +++G
Sbjct: 336 MELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNG 395

Query: 288 CCRL------ILHCVRFKQ--LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPP 339
            CR+      IL   R +   L   +     L DK               FC +   D  
Sbjct: 396 YCRIGDMNKAILTIERMESFGLRPNSITFNSLIDK---------------FCDMKEMDKA 440

Query: 340 DVQIGLDLLQFIKD--ELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVL 397
           +        +++K   E G+ PS +  + L+          R   I ++ E  G+  NV+
Sbjct: 441 E--------EWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVV 492

Query: 398 SYLWMYKAFLASGNRKSASKLLSKM 422
           SY  +       G    A  +L  M
Sbjct: 493 SYGSLINCLCKDGKILEAEIVLRDM 517



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 66/145 (45%), Gaps = 3/145 (2%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           ++ + P    Y  +I    ++     A  + + M+   + P   T NS++       + +
Sbjct: 658 QMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLS 717

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
            ++ +   +    L P ++T+  ++  +  +KDF  AY    ++ E N +P AS+ N + 
Sbjct: 718 NIKDLVNNMKAKELAPKADTYDILVKGHCDLKDFSGAYVWYREMVENNFLPNASICNELT 777

Query: 124 AGYFRKKDVQGALMVLKEMEQANVK 148
           AG  ++  +Q   ++  EM   NVK
Sbjct: 778 AGLEQEGRLQEVQVICSEM---NVK 799


>gi|414871694|tpg|DAA50251.1| TPA: hypothetical protein ZEAMMB73_705675 [Zea mays]
          Length = 1161

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 128/275 (46%), Gaps = 5/275 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  L++  C   K+  AL +++ M++  +VP T     +L+      +      +
Sbjct: 678 PDIHTYTILLSGFCRKGKILPALVILQMMLEKGVVPDTVAYTCLLNGLINEGQVKAASYV 737

Query: 69  Y-PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +  +IC   L  +   + S+++  +K ++ ++   ++ D+ +  + P ++ YN +M GY 
Sbjct: 738 FHEIICKEGLYADCIAYNSLMNGYLKSRNVNTIKRMMSDMYQNEVYPNSASYNILMHGYV 797

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITKY 184
           ++     +L + K M +  ++PD+ T+  LI     C   +  +K+ E++   G    + 
Sbjct: 798 KRGQFSKSLYLYKYMVRKGIRPDNVTYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDRL 857

Query: 185 VFMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
           VF  LI A++   +   A QV    + + +   S+  SA+++ L   G    +  V  E+
Sbjct: 858 VFDILITAFSEKSKMHNALQVFNCMKWLHMSPSSKTFSAMINGLIRKGYLDHSHKVLHEM 917

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            + G        IAL+      GE++R  +L EE+
Sbjct: 918 LQVGLQPNHTHYIALVNAKCRVGEIDRAFRLKEEM 952



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 60/280 (21%), Positives = 129/280 (46%), Gaps = 8/280 (2%)

Query: 7    ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
            I P + +Y+ LI    +   + +A+  +E+MV   + P     + ++ A  E  + +   
Sbjct: 817  IRPDNVTYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDRLVFDILITAFSEKSKMHNAL 876

Query: 67   RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +++  +   ++ P+S+TF +MI+  ++    D ++ +L ++ ++ L P  + Y A++   
Sbjct: 877  QVFNCMKWLHMSPSSKTFSAMINGLIRKGYLDHSHKVLHEMLQVGLQPNHTHYIALVNAK 936

Query: 127  FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
             R  ++  A  + +EM+   + P     S +I     C   E+ +  +  +  +G   T 
Sbjct: 937  CRVGEIDRAFRLKEEMKAIGIVPAEVAESSIIRGLCRCGKLEEAVIVFSSMMRSGMVPTV 996

Query: 184  YVFMALINAYTTCGEFEKARQVVLDAEIPV-KSRSEVKS--ALVSALASHGRTSDAIIVY 240
              F  L+  ++ C E + A  + L   + + + R +V S   L++ L      SDA+ +Y
Sbjct: 997  ATFTTLM--HSLCKESKIADALHLKRLMELCRLRVDVVSYNVLITGLCKDKHISDALDLY 1054

Query: 241  EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
             E+K  G        I L   + S G +    +LLE++ +
Sbjct: 1055 GEMKSKGLWPNITTYITLTGAMYSTGRVQNGEELLEDIEE 1094



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 96/436 (22%), Positives = 186/436 (42%), Gaps = 31/436 (7%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           + PS A+Y  +I   C   ++  AL ++ +M    ++PS  T +++L+  C+ S    L 
Sbjct: 361 LVPSVATYTTMIDGYCRNRRIDKALSILSEMQITGVMPSELTYSALLNGYCKVSM---LG 417

Query: 66  RRIYPMICHHNLKPN----SETFRS-MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
             IY M    +LK      ++T R+ +I    ++ +   A  +L  + E  + P    Y+
Sbjct: 418 PAIYLM---EDLKSRGITINKTMRTILIDGFCQVGEISKAKQILKSMFEDGIDPDVITYS 474

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI-HNCSNE--EDIIKYYEQLKSA 177
           A++ G  R   +     +L  M+++ + P+   ++ LI + C     ++ +K++  +   
Sbjct: 475 ALINGMCRMAKMHETKEILSRMQKSGILPNDVLYTTLICYYCKAGYVKEALKHFVDIYRR 534

Query: 178 GGQITKYVFMALINAYTTCG---EFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTS 234
           G      +  AL++A+   G   E E  RQ +    I   S S   + ++ +    G   
Sbjct: 535 GLVANPVIHNALLHAFYREGMITEAEHFRQYMSRMNISFDSVSF--NRIIDSYCHRGNIV 592

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD--GCCRLI 292
            A  VY+++   G +        L+  L   G L +  Q +  + D  + +D      L+
Sbjct: 593 GAFSVYDDMVRYGYSPNVCTYQNLLRGLCQGGHLVQARQFMSCLLDIPFAIDEKTFNALL 652

Query: 293 LHCVRFKQLSSATDLL-KQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFI 351
           L   R+  L  A DL  K +K+    D        S  FC+     P      L +LQ +
Sbjct: 653 LGICRYGTLDEALDLCEKMIKNNCLPDIHTYTILLSG-FCRKGKILP-----ALVILQMM 706

Query: 352 KDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYE-NAGLPYNVLSYLWMYKAFLASG 410
            ++ G+ P       LL   +N   +K A  ++ E     GL  + ++Y  +   +L S 
Sbjct: 707 LEK-GVVPDTVAYTCLLNGLINEGQVKAASYVFHEIICKEGLYADCIAYNSLMNGYLKSR 765

Query: 411 NRKSASKLLSKMPKDD 426
           N  +  +++S M +++
Sbjct: 766 NVNTIKRMMSDMYQNE 781



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 85/194 (43%), Gaps = 32/194 (16%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  +I   C + +   A  ++++M + +L P   T N++++      + N  R ++  +
Sbjct: 297 TYNIMIDKLCRIKRSTRAFLLLKRMRKDDLTPDECTYNTLINGFFREGKINHARYVFNHM 356

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
              NL P+  T+ +MI    + +  D A S+L +++   +MP+   Y+A++ GY +   +
Sbjct: 357 LRQNLVPSVATYTTMIDGYCRNRRIDKALSILSEMQITGVMPSELTYSALLNGYCKVSML 416

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINA 192
             A+ ++                                E LKS G  I K +   LI+ 
Sbjct: 417 GPAIYLM--------------------------------EDLKSRGITINKTMRTILIDG 444

Query: 193 YTTCGEFEKARQVV 206
           +   GE  KA+Q++
Sbjct: 445 FCQVGEISKAKQIL 458



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 105/232 (45%), Gaps = 16/232 (6%)

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
           CH +   NS T+ +++   VK   F +A  +L+D++  ++      YN ++    R K  
Sbjct: 255 CHIS---NSVTYNTILHWYVKKGRFKAALCVLEDMERDSVQADVYTYNIMIDKLCRIKRS 311

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI--IKY-YEQLKSAGGQITKYVFMAL 189
             A ++LK M + ++ PD  T++ LI+    E  I   +Y +  +       +   +  +
Sbjct: 312 TRAFLLLKRMRKDDLTPDECTYNTLINGFFREGKINHARYVFNHMLRQNLVPSVATYTTM 371

Query: 190 INAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGC 248
           I+ Y      +KA  ++ + +I     SE+  SAL++          AI + E++K  G 
Sbjct: 372 IDGYCRNRRIDKALSILSEMQITGVMPSELTYSALLNGYCKVSMLGPAIYLMEDLKSRGI 431

Query: 249 NLEPRAVIALIEHLNSEGELNRLIQLL----EEVHDPDY-----WMDGCCRL 291
            +       LI+     GE+++  Q+L    E+  DPD       ++G CR+
Sbjct: 432 TINKTMRTILIDGFCQVGEISKAKQILKSMFEDGIDPDVITYSALINGMCRM 483


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 92/468 (19%), Positives = 183/468 (39%), Gaps = 57/468 (12%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
            +L  +P+ A+   L+       K+  A ++V ++ +   VP+    N+++++  +  + 
Sbjct: 322 VELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDL 381

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           +    +Y  +   NL+PN  T+  +I    +    D A S  D + +  +  T   YN++
Sbjct: 382 DKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSL 441

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGG 179
           + G  +  D+  A  +  EM    V+P + TF+ LI     +   +   K Y ++   G 
Sbjct: 442 INGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGI 501

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAII 238
               Y F ALI+   +  +  +A ++  +  E  +K      + L+      G+   A  
Sbjct: 502 TPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFE 561

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC-RLILH--C 295
           + E++ + G   +      LI  L S G +++    ++++H  +  ++  C   +LH  C
Sbjct: 562 LLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYC 621

Query: 296 VRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDP----PDVQIGLDLLQFI 351
              + + + +   + ++     D          + C     D     PD +   DLL+ +
Sbjct: 622 QEGRLMEALSASCEMIQRGINMD----------LVCHAVLIDGALKQPDRKTFFDLLKDM 671

Query: 352 KDELGLPPSR--------------------KCLDF---------------LLGACVNARD 376
            D+ GL P                      +C D                L+     A +
Sbjct: 672 HDQ-GLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGE 730

Query: 377 LKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424
           + RA L++K  + A +P N ++Y          GN K A  L   M K
Sbjct: 731 MDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLK 778



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 70/321 (21%), Positives = 131/321 (40%), Gaps = 49/321 (15%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEE- 58
           MH K  + P + +Y+ LI+  C   +V  A D ++ + +  +  +    +++LH  C+E 
Sbjct: 566 MHQK-GLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEG 624

Query: 59  ------SYEFNLVRRIYPM--ICH-------------------------HNLKPNSETFR 85
                 S    +++R   M  +CH                           L+P++  + 
Sbjct: 625 RLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYT 684

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           SMI    K   F  A+   D +      P    Y A+M G  +  ++  A ++ K M+ A
Sbjct: 685 SMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAA 744

Query: 146 NVKPDSQTFSYLIHNCSNE----EDIIKYYEQLKS-AGGQITKYVFMALINAYTTCGEFE 200
           NV P+S T+   + N + E    E I  ++  LK      +T  +   +I  +   G F 
Sbjct: 745 NVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLKGLLANTVTHNI---IIRGFCKLGRFH 801

Query: 201 KARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--A 257
           +A +V+ +  E  +       S L+      G    ++ +++ +   G  LEP  V    
Sbjct: 802 EATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRG--LEPDLVAYNL 859

Query: 258 LIEHLNSEGELNRLIQLLEEV 278
           LI      GEL++  +L +++
Sbjct: 860 LIYGCCVNGELDKAFELRDDM 880



 Score = 45.4 bits (106), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 87/210 (41%), Gaps = 10/210 (4%)

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           I  ++  +NL P   T  ++++  +K++ F + + L D+     + P     +A++    
Sbjct: 177 IVKLMFANNLLPEVRTLSALLNGLLKVRKFITVWELFDESVNAGVRPDPYTCSAVVRSMC 236

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQ---ITKY 184
             KD   A   ++ ME         T++ LIH     + + +  E  +S GG+       
Sbjct: 237 ELKDFLRAKEKIRWMEANGFDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVV 296

Query: 185 VFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
            +  L+  +    +FE   Q++ +  E+         S LV  L   G+  DA   YE +
Sbjct: 297 TYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDA---YELV 353

Query: 244 KEAG-CNLEPRAVI--ALIEHLNSEGELNR 270
            + G     P   +  ALI  L   G+L++
Sbjct: 354 VKVGRFGFVPNLFVYNALINSLCKGGDLDK 383


>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
 gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 632

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/292 (21%), Positives = 131/292 (44%), Gaps = 8/292 (2%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY-PMICHHNLKPNSETFRSMI 88
           A+ +  Q+   +  P+ +  NS++       ++  V  +Y  M    +  P++ T+ ++I
Sbjct: 178 AITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCHPDTVTYSALI 237

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
           S   K+   DSA  LL+++KE  + PTA +Y  I++ +F+  +V GAL + +EM     +
Sbjct: 238 SAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCR 297

Query: 149 PDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           PD  T++ LI        I     +Y +++    +    V   +IN     G  +   ++
Sbjct: 298 PDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKL 357

Query: 206 VLDAEIP--VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
             +  +   + +     + + +   S  R S+    +E +K +G +  P     LI+   
Sbjct: 358 FEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFC 417

Query: 264 SEGELNRLIQLLEEVHDPDY--WMDGCCRLILHCVRFKQLSSATDLLKQLKD 313
               + + + LLEE+ +  +       C LI    + K+   A +L ++LK+
Sbjct: 418 KTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKE 469



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 107/261 (40%), Gaps = 5/261 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P++  Y  +I+    L  VH AL + E+M      P   T   ++    ++   +   
Sbjct: 261 MQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAY 320

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
             Y  +   + KP++    +MI+   K    D    L +++   + +P    YN I+   
Sbjct: 321 HFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKAL 380

Query: 127 FRKKD-VQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQIT 182
           F  K  V       + M+ + + P   T+S LI   C     E  +   E++   G    
Sbjct: 381 FESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPC 440

Query: 183 KYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
              + +LI+A      ++ A ++  +  E    S + V + ++  L   GR  DAI +++
Sbjct: 441 PAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFD 500

Query: 242 EIKEAGCNLEPRAVIALIEHL 262
           E+ + GC     A  AL+  L
Sbjct: 501 EMSKLGCTPNVYAYNALMSGL 521



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/203 (20%), Positives = 94/203 (46%), Gaps = 3/203 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I+PS  +Y  LI   C   ++  A+ ++E+M +    P      S++ A  ++  ++L  
Sbjct: 402 ISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLAC 461

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +  +    ++  +  MI    K    D A +L D++ ++   P    YNA+M+G 
Sbjct: 462 ELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGL 521

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK--- 183
            R   +  AL  +++M++    PD  +++ +++  +      +  E L +      K   
Sbjct: 522 ARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDA 581

Query: 184 YVFMALINAYTTCGEFEKARQVV 206
             +  +++A +  G FE+A +++
Sbjct: 582 VSYNTVLSALSHAGMFEEAAELM 604


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 132/321 (41%), Gaps = 17/321 (5%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  + P++ S+  LI   C    +     + + M +  + P   T + ++H   +    +
Sbjct: 251 KRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLD 310

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
           +  +++  +    L+PN  TF ++I    + +  DSA +    +  M + P   MYN ++
Sbjct: 311 VAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLL 370

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQ 180
            G  +  DV  A  ++ EM    +KPD  T++ LI     E D+   ++  + +   G  
Sbjct: 371 NGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVV 430

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
           +    F ALI+ +   G    A + + +  E  +K      + ++      G      + 
Sbjct: 431 LDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVK---MG 487

Query: 240 YEEIKEAGCNLEPRAVIA---LIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL--- 293
           ++ +KE   N     VI    L+  L  +G++     LLE + +     D     IL   
Sbjct: 488 FKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEG 547

Query: 294 HCVRFKQLSSATDLLKQLKDK 314
           HC   K    A DLLK   +K
Sbjct: 548 HCKNGK----AEDLLKLRNEK 564



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 107/236 (45%), Gaps = 13/236 (5%)

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           I+  I    L+P + +F ++I+   K ++ D  + L   ++E  + P    Y+ ++ G  
Sbjct: 245 IFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLC 304

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKY 184
           ++  +  A  +  EM+Q  ++P+  TF+ LI   C +   +  +  Y Q+ + G +    
Sbjct: 305 KEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLV 364

Query: 185 VFMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
           ++  L+N     G+  KAR++V +   + +K      + L+      G    A+ + + +
Sbjct: 365 MYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGM 424

Query: 244 KEAGCNLEPRAVIALIEHLNSEGEL----NRLIQLLEEVHDPD---YWM--DGCCR 290
            E G  L+  A  ALI     +G +      L +++E    PD   Y M  DG C+
Sbjct: 425 NEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCK 480



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 65/357 (18%), Positives = 149/357 (41%), Gaps = 12/357 (3%)

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
            Y  I  +   P  + +  +I+   K      A  + +++++  L PT   +N ++ G  
Sbjct: 210 FYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLC 269

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE--DII-KYYEQLKSAGGQITKY 184
           + +++     + K ME+  + PD  T+S LIH    E   D+  + +++++  G +    
Sbjct: 270 KSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGI 329

Query: 185 VFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
            F ALI+        + A         + VK    + + L++ L   G  + A  + +E+
Sbjct: 330 TFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEM 389

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQL 301
           +  G   +      LI+    EG+L   +++ + +++    +D      LI    R  ++
Sbjct: 390 RMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRV 449

Query: 302 SSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSR 361
             A   L+++ +     + A      + +C+       +V++G  LL+ ++   G  P  
Sbjct: 450 RDAERTLREMVEAGMKPDDATYTMVIDGYCKKG-----NVKMGFKLLKEMQIN-GHKPGV 503

Query: 362 KCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKL 418
              + L+        +K A+++ +   N G+  + ++Y  + +    +G  +   KL
Sbjct: 504 ITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGKAEDLLKL 560


>gi|357121739|ref|XP_003562575.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 770

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 149/309 (48%), Gaps = 44/309 (14%)

Query: 29  VALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI----YPMICHHNLKPNSETF 84
           + L++   M++GE++P+  T+ S++  C  S + NL +++    + + C  NL   + T 
Sbjct: 264 LGLNLFLDMLKGEVMPNEFTLTSVMSLCGTSLDMNLGKQVQGFCFKIGCATNLPVKNST- 322

Query: 85  RSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR-----KKDVQG----- 134
              + L ++  + + A  L +++++ +++     +NA+++G+ +     K D+       
Sbjct: 323 ---MYLYLRKGETEEAMRLFEEMEDNSVIT----WNAMISGFAQIMDSAKDDLHARSRGF 375

Query: 135 -ALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFM------ 187
            AL + +++ ++ +KPD  TFS ++  CS     +   EQ +    Q  K  F+      
Sbjct: 376 QALKIFRDLVRSAMKPDLFTFSSILSVCST----MMALEQGEQIHAQTIKTGFLSDVVVN 431

Query: 188 -ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA 246
            AL+N Y  CG  E A +  +  E+P ++     S ++S  + HGR  DAI ++E++  A
Sbjct: 432 SALVNMYNKCGCIEYATKAFV--EMPTRTLVTWTS-MISGYSQHGRPHDAIQLFEDMILA 488

Query: 247 GCNLEPRAVIALIEHLNSEG---ELNRLIQLLEEVHDPDYWMD--GCCRLILHCVRFKQL 301
           G        ++L+   +  G   E  R   +++  +  +  MD  GC  +I   VR  +L
Sbjct: 489 GAKPNEITFVSLLSACSYAGLVEEAMRYFDMMQNEYHIEPLMDHYGC--MIDMFVRLGRL 546

Query: 302 SSATDLLKQ 310
             A   +K+
Sbjct: 547 DDAYAFIKR 555



 Score = 38.1 bits (87), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 47/241 (19%), Positives = 99/241 (41%), Gaps = 20/241 (8%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL +   +V+  + P   T +SIL  C          +I+          +     ++++
Sbjct: 377 ALKIFRDLVRSAMKPDLFTFSSILSVCSTMMALEQGEQIHAQTIKTGFLSDVVVNSALVN 436

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASM--YNAIMAGYFRKKDVQGALMVLKEMEQANV 147
           +  K    + A       K    MPT ++  + ++++GY +      A+ + ++M  A  
Sbjct: 437 MYNKCGCIEYA------TKAFVEMPTRTLVTWTSMISGYSQHGRPHDAIQLFEDMILAGA 490

Query: 148 KPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYV--FMALINAYTTCGEFEKA 202
           KP+  TF  L+  CS     E+ ++Y++ +++    I   +  +  +I+ +   G  + A
Sbjct: 491 KPNEITFVSLLSACSYAGLVEEAMRYFDMMQNE-YHIEPLMDHYGCMIDMFVRLGRLDDA 549

Query: 203 RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
              +       +    + S+LV+   SHG    A    + + E    L+P+ V   +  L
Sbjct: 550 YAFI--KRKGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLLE----LKPKVVETYVLLL 603

Query: 263 N 263
           N
Sbjct: 604 N 604


>gi|357125910|ref|XP_003564632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 1 [Brachypodium distachyon]
 gi|357125912|ref|XP_003564633.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 2 [Brachypodium distachyon]
          Length = 704

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 87/425 (20%), Positives = 169/425 (39%), Gaps = 19/425 (4%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           +P+ A+Y  ++   C L     A DV E+MV     P   T  +++H    S + +   R
Sbjct: 262 SPNLATYNVMLDGLCKLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAAR 321

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +Y  +    L P+   + S++           A+   D +    +    S YN ++ G F
Sbjct: 322 VYSEMIKTGLVPDVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSGIRNVTS-YNIMLKGLF 380

Query: 128 RKKDVQGALMVLKEMEQAN-VKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITK 183
               V  A  + + +E+ + + PD  TFS +IH    +      ++  E+ +++G ++ +
Sbjct: 381 DGGMVDKATDLWELLEKDDSLSPDMVTFSTMIHGLCEKGFANKSLQILEEARTSGKELDE 440

Query: 184 YVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
           + + ++I+     G  + A     ++ +D+    K  S + +AL++      + SDAI V
Sbjct: 441 FSYSSMISGLCKDGRLDDAVKLYEKISMDS---FKPNSHIYNALINGFCQASKFSDAIRV 497

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD--GCCRLILHCVR 297
           Y ++ E  C+        LI  L    +     +   E+ +    +D      LI    R
Sbjct: 498 YSQMAENDCSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKGCMLDVNTYGSLIRGLCR 557

Query: 298 FKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGL 357
            K++  A  L  Q+ DK    ++ M        C     D         LL  +K++   
Sbjct: 558 DKKIDGALALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEAS-----QLLSEMKEKNNC 612

Query: 358 PPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASK 417
            P+    + L+          +A  +W      GL  +++SY    K   +        +
Sbjct: 613 CPNVVTYNTLMDGFYETGCFDKAASLWMAILENGLVPDIISYNTRIKGLCSCNRTPEGVQ 672

Query: 418 LLSKM 422
           LL++M
Sbjct: 673 LLNEM 677



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 92/448 (20%), Positives = 177/448 (39%), Gaps = 63/448 (14%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  L++      ++  AL ++++M   E+ P     N++L  C  + EF    
Sbjct: 190 LAPDRITYSTLMSGFVKNNRLDNALYLLDEMPSYEVQPDAVCYNALLGGCFRNGEFEKAM 249

Query: 67  RIYPMICHH-NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           R++  +       PN  T+  M+    K+  F  A  + + +   N  P    Y  ++ G
Sbjct: 250 RVWEQLVRDPGASPNLATYNVMLDGLCKLGMFKEAGDVWERMVANNHQPDMITYGTMIHG 309

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAG-GQI 181
             R  DV  A  V  EM +  + PD   ++ L+    +   +    K+++ +  +G   +
Sbjct: 310 LCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSGIRNV 369

Query: 182 TKYVFMALINAYTTCGEFEKARQV--VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
           T Y  M  +      G  +KA  +  +L+ +  +       S ++  L   G  + ++ +
Sbjct: 370 TSYNIM--LKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTMIHGLCEKGFANKSLQI 427

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV---------HDPDYWMDGCCR 290
            EE + +G  L+  +  ++I  L  +G L+  ++L E++         H  +  ++G C 
Sbjct: 428 LEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFC- 486

Query: 291 LILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLL-- 348
                    Q S  +D ++                   ++ Q+A  D     I  + L  
Sbjct: 487 ---------QASKFSDAIR-------------------VYSQMAENDCSPTTITYNTLIH 518

Query: 349 QFIKDELGLPPSRKCLDFLLGAC---VNA-----RDLKR------AHLIWKEYENAGLPY 394
              K E  L  SR   + L   C   VN      R L R      A  +W +  + GL  
Sbjct: 519 GLCKAEKYLEASRFTREMLEKGCMLDVNTYGSLIRGLCRDKKIDGALALWNQILDKGLQT 578

Query: 395 NVLSYLWMYKAFLASGNRKSASKLLSKM 422
           +V+ +  +     ++G    AS+LLS+M
Sbjct: 579 DVVMHNILIHGLCSAGKVDEASQLLSEM 606



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 79/171 (46%), Gaps = 10/171 (5%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICH----HNLKPNSETFRSMI-SLNVKIKDFD 98
           P   + N++L A   +  F+     +  + H      + PN +T+  M+ SL V+  D D
Sbjct: 118 PGVRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIMLRSLCVR-GDLD 176

Query: 99  SAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            A +L D L+   L P    Y+ +M+G+ +   +  AL +L EM    V+PD+  ++ L+
Sbjct: 177 RAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDNALYLLDEMPSYEVQPDAVCYNALL 236

Query: 159 HNCSNE---EDIIKYYEQL-KSAGGQITKYVFMALINAYTTCGEFEKARQV 205
             C      E  ++ +EQL +  G       +  +++     G F++A  V
Sbjct: 237 GGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDGLCKLGMFKEAGDV 287



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/257 (20%), Positives = 108/257 (42%), Gaps = 23/257 (8%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           SY  +I+  C   ++  A+ + E++      P++   N++++   ++ +F+   R+Y  +
Sbjct: 442 SYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQM 501

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
             ++  P + T+ ++I    K + +  A     ++ E   M   + Y +++ G  R K +
Sbjct: 502 AENDCSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKGCMLDVNTYGSLIRGLCRDKKI 561

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYV-FMA 188
            GAL +  ++    ++ D    + LIH  CS    ++  +   ++K         V +  
Sbjct: 562 DGALALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEASQLLSEMKEKNNCCPNVVTYNT 621

Query: 189 LINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE-AG 247
           L++ +   G F+KA                  ++L  A+  +G   D I     IK    
Sbjct: 622 LMDGFYETGCFDKA------------------ASLWMAILENGLVPDIISYNTRIKGLCS 663

Query: 248 CNLEPRAVIALIEHLNS 264
           CN  P  V  L E L S
Sbjct: 664 CNRTPEGVQLLNEMLAS 680


>gi|255582620|ref|XP_002532091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528238|gb|EEF30293.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 446

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 119/247 (48%), Gaps = 13/247 (5%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +I+    +     A+ +  +M +    P   T+ SIL AC +  +  L + +  +I
Sbjct: 195 SWNSMISGYTKMGFAREAVRLFMEMREQGFEPVEMTLVSILGACGDLGDLALGKWVEALI 254

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               ++ NS T  ++I +  K  D  SA  + D++ E +++     +NA++ GY +    
Sbjct: 255 GDKKMELNSYTASALIDMYGKCGDLMSARRVFDNMAEKDIVT----WNAMITGYAQNGAS 310

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSN--EEDIIKYYEQLKSAGG-QITKYVFMAL 189
             A+ +   M +A + P+  T   ++  C++    D+ K+ E   S  G Q   YV  AL
Sbjct: 311 DEAMTLFNVMREAGITPNEITMVVVLSACASIGALDLGKWVEMYASQRGLQHDVYVASAL 370

Query: 190 INAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGC 248
           ++ Y  CG  + A +V  +    +  ++EV  +A++SALA HGR  +A+ ++  +   G 
Sbjct: 371 VDMYAKCGSLDNALRVFEN----MPHKNEVSWNAMISALAFHGRAREALSLFSRMLN-GS 425

Query: 249 NLEPRAV 255
            + P  +
Sbjct: 426 TVRPNDI 432



 Score = 39.7 bits (91), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 86/188 (45%), Gaps = 22/188 (11%)

Query: 92  VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK-KDVQGALMVLKEMEQANVKPD 150
           + +KDF  A  L   +      P    +N ++ G     ++   A+ +  +M+   +KP+
Sbjct: 71  IDLKDFAYASLLFTQMPN----PNDYAFNVMIRGLTTTWRNYSLAIQLYYQMKSLGLKPN 126

Query: 151 SQTFSYLIHNCSNEEDI----IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV- 205
           + TF +L  +C+N   +    I +   LK  G     ++  +LI  Y  C + + AR+V 
Sbjct: 127 NFTFPFLFISCANLVALHCGQIAHSLVLK-MGFNNDSHINHSLITMYAKCSKLDSARKVF 185

Query: 206 --VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
             +L+ +I         ++++S     G   +A+ ++ E++E G   EP   + L+  L 
Sbjct: 186 DEILERDIV------SWNSMISGYTKMGFAREAVRLFMEMREQG--FEP-VEMTLVSILG 236

Query: 264 SEGELNRL 271
           + G+L  L
Sbjct: 237 ACGDLGDL 244


>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 484

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 126/283 (44%), Gaps = 6/283 (2%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQ--GELVPSTETINSILHACEESYE 61
           +L   P+  SY  L+   CD  +   AL++++ M    G+  P   +  ++++   +  +
Sbjct: 155 QLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGD 214

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
            +     Y  +    + PN  T+ S+I+   K +  D A  +L  + +  +MP    YN+
Sbjct: 215 LDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNS 274

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI-HNCSNEE--DIIKYYEQLKSAG 178
           I+ GY      + A+  LK+M    V+PD  T++ L+ + C N    +  K ++ +   G
Sbjct: 275 IVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRG 334

Query: 179 GQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAI 237
            +     +  L+  Y T G   +   ++ L     +     V S L+ A A  G+   A+
Sbjct: 335 LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAM 394

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           +V+ ++++ G N +      +I  L   G +   ++  E++ D
Sbjct: 395 LVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID 437


>gi|297806463|ref|XP_002871115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316952|gb|EFH47374.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 942

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/383 (18%), Positives = 161/383 (42%), Gaps = 47/383 (12%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
            L V +++ +    P+  T   +++   +  + +    +  ++    +K N +T+  MI+
Sbjct: 469 GLIVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMIN 528

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
             VK+KD+ +A+++ +D+ +  + P   +YN I+A +    ++  A+  +KEM++   +P
Sbjct: 529 GFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIIAAFCGMGNMDRAIQTVKEMQKLRHRP 588

Query: 150 DSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
            ++TF  +I+  +   D+   ++ ++ ++  G   T + F ALIN      + EKA +++
Sbjct: 589 TTRTFMPIINGFAKSGDMRRSLEVFDMMRRCGCVPTVHTFNALINGLVEKRQMEKAVEIL 648

Query: 207 LDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
            +  +  V +     + ++   AS G T  A   +  ++  G  ++     AL++     
Sbjct: 649 DEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLEVDIFTYEALLKACCKS 708

Query: 266 GELNRLIQLLEEVHDPDYWMDGCCRLIL--HCVRFKQLSSATDLLKQLKDKFKDDEMAME 323
           G +   + + +E+   +   +     IL     R   +  A DL++Q+K +         
Sbjct: 709 GRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKE--------- 759

Query: 324 YHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLI 383
                                           G+ P        + AC  A D+ RA   
Sbjct: 760 --------------------------------GVKPDIHTYTSFISACSKAGDMNRATQT 787

Query: 384 WKEYENAGLPYNVLSYLWMYKAF 406
            +E E  G+  N+ +Y  + K +
Sbjct: 788 IEEMEALGVKPNIKTYTTLIKGW 810



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/248 (20%), Positives = 105/248 (42%), Gaps = 4/248 (1%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           KL   P++ ++  +I        +  +L+V + M +   VP+  T N++++   E  +  
Sbjct: 583 KLRHRPTTRTFMPIINGFAKSGDMRRSLEVFDMMRRCGCVPTVHTFNALINGLVEKRQME 642

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               I   +    +  N  T+  ++     + D   A+     L+   L      Y A++
Sbjct: 643 KAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLEVDIFTYEALL 702

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQ 180
               +   +Q AL V KEM   N+  +S  ++ LI   +   D+ +     +Q+K  G +
Sbjct: 703 KACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVK 762

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIV 239
              + + + I+A +  G+  +A Q + + E + VK   +  + L+   A       A+  
Sbjct: 763 PDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSC 822

Query: 240 YEEIKEAG 247
           YEE+K  G
Sbjct: 823 YEEMKAVG 830



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/286 (19%), Positives = 127/286 (44%), Gaps = 11/286 (3%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  ++  LI    +  ++  A++++++M    +  +  T   I+       +       
Sbjct: 623 PTVHTFNALINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEY 682

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  + +  L+ +  T+ +++    K     SA ++  ++   N+   + +YN ++ G+ R
Sbjct: 683 FTRLQNEGLEVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWAR 742

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYV 185
           + DV  A  ++++M++  VKPD  T++  I  CS   D+    +  E++++ G +     
Sbjct: 743 RGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKT 802

Query: 186 FMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAII------ 238
           +  LI  +      EKA     + + + +K    V   L+++L S    ++A I      
Sbjct: 803 YTTLIKGWARASLPEKALSCYEEMKAVGLKPDKAVYHCLLTSLLSRASIAEAYIYSGVMT 862

Query: 239 VYEEIKEAGCNLEPRAVIALIEHL-NSEGELNRLIQLLEEVHDPDY 283
           + +E+ EAG  ++    +     L   EG    L + L++   PD+
Sbjct: 863 ICKEMVEAGLIVDMGTAVHWSRCLCKIEGSGGELTETLQKTFPPDW 908



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 88/466 (18%), Positives = 187/466 (40%), Gaps = 63/466 (13%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           PS   +  ++ +      +H A +  E+M    + P++    S++HA     +       
Sbjct: 308 PSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMEEALSC 367

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    ++ +  T+  ++    K  + ++A    D+ K ++    AS+Y  I+  + +
Sbjct: 368 VRKMKEEGIEMSLVTYSVIVGGFSKAGNAEAADHWFDEAKRIHKTLNASIYGKIIYAHCQ 427

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYV 185
             +++ A  +++EME+  +      +  ++      ++E+  +  +++LK  G   T   
Sbjct: 428 TCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLIVFKRLKECGFTPTVVT 487

Query: 186 FMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +  LIN YT  G+  KA +V  +  E  VK   +  S +++        ++A  V+E++ 
Sbjct: 488 YGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMV 547

Query: 245 EAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEV----HDP----------DYWMDGC 288
           + G  ++P  ++   +I      G ++R IQ ++E+    H P           +   G 
Sbjct: 548 KEG--MKPDVILYNNIIAAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIINGFAKSGD 605

Query: 289 CR-----------------------LILHCVRFKQLSSATDLLKQLKDKFKDDEM----- 320
            R                       LI   V  +Q+  A ++L         DEM     
Sbjct: 606 MRRSLEVFDMMRRCGCVPTVHTFNALINGLVEKRQMEKAVEIL---------DEMTLAGV 656

Query: 321 -AMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKR 379
            A E+ +++I    A+    D     +    +++E GL       + LL AC  +  ++ 
Sbjct: 657 SANEHTYTKIMQGYASVG--DTGKAFEYFTRLQNE-GLEVDIFTYEALLKACCKSGRMQS 713

Query: 380 AHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKD 425
           A  + KE     +P N   Y  +   +   G+   A+ L+ +M K+
Sbjct: 714 ALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKE 759



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/311 (18%), Positives = 128/311 (41%), Gaps = 39/311 (12%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
            TP+  +Y  LI     + K+  AL+V   M +  +  + +T + +++   +  ++    
Sbjct: 481 FTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAF 540

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +    +KP+   + ++I+    + + D A   + +++++   PT   +  I+ G+
Sbjct: 541 AVFEDMVKEGMKPDVILYNNIIAAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIINGF 600

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN----------------------CSNE 164
            +  D++ +L V   M +    P   TF+ LI+                        +NE
Sbjct: 601 AKSGDMRRSLEVFDMMRRCGCVPTVHTFNALINGLVEKRQMEKAVEILDEMTLAGVSANE 660

Query: 165 EDIIK----------------YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
               K                Y+ +L++ G ++  + + AL+ A    G  + A  V  +
Sbjct: 661 HTYTKIMQGYASVGDTGKAFEYFTRLQNEGLEVDIFTYEALLKACCKSGRMQSALAVTKE 720

Query: 209 -AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
            +   +   S V + L+   A  G   +A  + +++K+ G   +     + I   +  G+
Sbjct: 721 MSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGD 780

Query: 268 LNRLIQLLEEV 278
           +NR  Q +EE+
Sbjct: 781 MNRATQTIEEM 791



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 60/390 (15%), Positives = 154/390 (39%), Gaps = 41/390 (10%)

Query: 78  KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALM 137
           KP+   F  M+    +  D   A    + ++   + PT+ +Y +++  Y   +D++ AL 
Sbjct: 307 KPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMEEALS 366

Query: 138 VLKEMEQANVKPDSQTFSYLIHNCS---NEEDIIKYYEQLKSAGGQITKYVFMALINAYT 194
            +++M++  ++    T+S ++   S   N E    ++++ K     +   ++  +I A+ 
Sbjct: 367 CVRKMKEEGIEMSLVTYSVIVGGFSKAGNAEAADHWFDEAKRIHKTLNASIYGKIIYAHC 426

Query: 195 TCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPR 253
                E+A  +V +  E  + +   +   ++            +IV++ +KE  C   P 
Sbjct: 427 QTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLIVFKRLKE--CGFTPT 484

Query: 254 AVI--ALIEHLNSEGELNRLIQLLEEVHDPD--YWMDGCCRLILHCVRFKQLSSATDLLK 309
            V    LI      G++++ +++   + +    + +     +I   V+ K  ++A  + +
Sbjct: 485 VVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFE 544

Query: 310 QLKDKFKDDEMAMEYHFSEIFCQIATTD------------------------------PP 339
            +  +    ++ +  +    FC +   D                                
Sbjct: 545 DMVKEGMKPDVILYNNIIAAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIINGFAKSG 604

Query: 340 DVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSY 399
           D++  L++   ++   G  P+    + L+   V  R +++A  I  E   AG+  N  +Y
Sbjct: 605 DMRRSLEVFDMMR-RCGCVPTVHTFNALINGLVEKRQMEKAVEILDEMTLAGVSANEHTY 663

Query: 400 LWMYKAFLASGNRKSASKLLSKMPKDDPHV 429
             + + + + G+   A +  +++  +   V
Sbjct: 664 TKIMQGYASVGDTGKAFEYFTRLQNEGLEV 693


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/278 (20%), Positives = 134/278 (48%), Gaps = 4/278 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           +TP+  +Y  L+     + ++ +AL +  +M +    PS  T N +L A   +      R
Sbjct: 166 LTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAAR 225

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++  +      P+S T+ ++++   K    + A+ +  ++ +  +      YN+++A  
Sbjct: 226 KLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATL 285

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH--NCSNEEDIIK-YYEQLKSAGGQITK 183
            +  ++     ++KEM +    PD+ +F+ ++     +N+ D  +  + ++  +G +   
Sbjct: 286 AKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDL 345

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             +  LI++Y   G+  +ARQ++ +  E      ++  ++L+  LA+ G+  +A  V EE
Sbjct: 346 ISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEE 405

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           ++ AGC  +      L++ L   GE  R  +L +++ D
Sbjct: 406 METAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKD 443



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/274 (20%), Positives = 122/274 (44%), Gaps = 4/274 (1%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           +P S +Y  L+       +V  A  V  +MV   +       NS+L    ++   + V +
Sbjct: 237 SPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWK 296

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +   +      P++ +F +++    K    D+A  +   + E    P    YN ++  Y 
Sbjct: 297 LMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYA 356

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY---EQLKSAGGQITKY 184
           R  D   A  +L+EM +A   P+++T++ LIH  + +  + + +   E++++AG +    
Sbjct: 357 RFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVV 416

Query: 185 VFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
            +  L++     GE ++A ++     +  V+  +   +  +  LA   R  +A+++++++
Sbjct: 417 TYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDM 476

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEE 277
           K  GC ++      LI   +  G+     QL  E
Sbjct: 477 KAVGCPVDKAMYRILIRAAHRAGDTELEAQLKHE 510



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/348 (19%), Positives = 128/348 (36%), Gaps = 51/348 (14%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  LI Y     ++  A+++  +M      P   T   +++A  ++      R  +  +
Sbjct: 102 AYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAM 161

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               L PN  T+  ++    K+   D A  L  ++K     P+   YN ++        V
Sbjct: 162 LERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRV 221

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHN-------------------------------- 160
             A  +  +M      PDS T+S L++                                 
Sbjct: 222 GAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSL 281

Query: 161 ------CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPV 213
                   N + + K  +++   G     + F  +++A     + + AR+V     E   
Sbjct: 282 LATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGC 341

Query: 214 KSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQ 273
           K      + L+ + A  G  + A  + EE+ EAG   E +   +LI  L ++G+++    
Sbjct: 342 KPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFA 401

Query: 274 LLEEVHDPDYWMDGC-------CRLILHCVRFKQLSSATDLLKQLKDK 314
           +LEE+        GC        RL+    +  +   A  L +Q+KDK
Sbjct: 402 VLEEMETA-----GCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDK 444



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/430 (19%), Positives = 155/430 (36%), Gaps = 46/430 (10%)

Query: 16  KLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHH 75
           KLIT      K   A D+  Q       P+      ++     S EF     +Y  +   
Sbjct: 35  KLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYKKLVQK 94

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
             + +   +  +I    +    DSA  +  ++K     P    Y  ++    +   VQ A
Sbjct: 95  GCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEA 154

Query: 136 LMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITKYVFMALINA 192
                 M +  + P+  T++ L+         +  +  + ++K  G Q +   +  L++A
Sbjct: 155 RSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDA 214

Query: 193 YTTCGEFEKARQV----VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC 248
             + G    AR++      D   P    S   S LV+ L   GR  +A  V+ E+ + G 
Sbjct: 215 LCSAGRVGAARKLFHKMTGDGCSP---DSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGV 271

Query: 249 NLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLL 308
            ++     +L+  L   G ++R+ +L++E+    +  D                S   ++
Sbjct: 272 AVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAF--------------SFNTIM 317

Query: 309 KQLKDKFKDDEMAMEYHFSEIFCQIATTD-PPDV---QIGLDLLQFIKD----------- 353
             L    K D         E+F ++  +   PD+    I +D      D           
Sbjct: 318 DALGKANKPDAA------REVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEM 371

Query: 354 -ELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNR 412
            E G  P  K  + L+        +  A  + +E E AG   +V++Y  +       G  
Sbjct: 372 VEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGEN 431

Query: 413 KSASKLLSKM 422
           + A++L  +M
Sbjct: 432 QRAARLFQQM 441


>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Brachypodium distachyon]
          Length = 628

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 81/390 (20%), Positives = 165/390 (42%), Gaps = 20/390 (5%)

Query: 44  PSTETINSILHACEESYEFNLVRRIY-PMICHHNLKPNSETFRSMISLNVKIKDFDSAYS 102
           P+ +  NS++       ++  V  +Y  M    +  P++ T+ ++IS   K+   DSA  
Sbjct: 188 PTAQAYNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDTVTYSALISAFCKLGRQDSAIR 247

Query: 103 LLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS 162
           LL+++K+  + PTA +Y  ++A +F+  +V GAL + +EM     +PD  T++ LI    
Sbjct: 248 LLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCRPDVFTYTELIRGLG 307

Query: 163 NE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV--LDAEIPVKSRS 217
                ++   ++ +++  G +    V   +IN     G  + A ++   +     + S  
Sbjct: 308 KAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVV 367

Query: 218 EVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEE 277
              + + +   S  R S+    +E +K +G +  P     LI+         + + LLEE
Sbjct: 368 TYNTIIKALFESKSRISEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEE 427

Query: 278 VHDPDYWMDGC----CRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQI 333
           + +  +    C    C LI    + K+   A +L ++LK+        +   ++ +   +
Sbjct: 428 MDEKGF--PPCPAAYCSLIDALGKAKRYDIAHELFQELKENCGSSSARV---YAVMIKHL 482

Query: 334 ATTDPPDVQIGL-DLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGL 392
                 D  + L D +    ++LG  P+    + L+     A  L  A    +  +  G 
Sbjct: 483 GKAGRLDDAVNLFDEM----NKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQEHGC 538

Query: 393 PYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
             ++ SY  +      +G    A ++LS M
Sbjct: 539 IPDINSYNIILNGLAKTGGPHRAMEMLSNM 568



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/279 (20%), Positives = 115/279 (41%), Gaps = 5/279 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P++  Y  LI     L  VH AL + E+M      P   T   ++    ++  F+   
Sbjct: 257 MQPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRFDEAY 316

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
             +  +     +P++    +MI+   K    D A  L +++  +  +P+   YN I+   
Sbjct: 317 NFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKAL 376

Query: 127 FRKKD-VQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQIT 182
           F  K  +       + M+ + + P   T+S LI      +  E  +   E++   G    
Sbjct: 377 FESKSRISEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPC 436

Query: 183 KYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
              + +LI+A      ++ A ++  +  E    S + V + ++  L   GR  DA+ +++
Sbjct: 437 PAAYCSLIDALGKAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFD 496

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           E+ + GC     A  AL+  L   G L+  +  +  + +
Sbjct: 497 EMNKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQE 535



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/208 (19%), Positives = 94/208 (45%), Gaps = 3/208 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I+PS  +Y  LI   C   +   A+ ++E+M +    P      S++ A  ++  +++  
Sbjct: 398 ISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAH 457

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +  +    ++  +  MI    K    D A +L D++ ++   P    YNA+M+G 
Sbjct: 458 ELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGL 517

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQL---KSAGGQITK 183
            R   +  AL  ++ M++    PD  +++ +++  +      +  E L   K +  +   
Sbjct: 518 ARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDA 577

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEI 211
             +  ++ A +  G FE+A +++ +  +
Sbjct: 578 VSYNTVLGAMSHAGLFEEAAKLMKEMNV 605


>gi|357162065|ref|XP_003579293.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Brachypodium distachyon]
          Length = 858

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 108/226 (47%), Gaps = 5/226 (2%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHAC-EESYEFNLVRRIYPMICHHNLKPNSETFR 85
           V+ A+ V+E M    L P+T T N+++ AC +   +       +  +    L P+ +TF 
Sbjct: 249 VNEAMGVLESMKGAGLRPTTVTYNAVIDACGKGGVDLRFTLGYFRQMLRDRLCPDRKTFN 308

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           S++S   +    + A +L D++  + +      YN  +    +  +++ A+ VL +ME  
Sbjct: 309 SLLSACSRAGHLEDARALFDEMIHLGIGRDIYTYNTFIDAICKCGNIELAMQVLLDMEAK 368

Query: 146 NVKPDSQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
           NVKP+  T+S LI   S  E   + +K YE++KS G Q+ +  +  ++  Y   G++ + 
Sbjct: 369 NVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMKSLGIQLDRVCYNTVLAIYVKAGKYGEI 428

Query: 203 RQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAG 247
             V  + E     +  V  ++L++     GR      + ++++  G
Sbjct: 429 AIVCDEMEDSGIEKDTVTYNSLINGYGKQGRLDIVSFLVQDMRRRG 474



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 123/290 (42%), Gaps = 44/290 (15%)

Query: 7   ITPSSASYKKLITYSCDLLKVHV--ALDVVEQMVQGELVPSTETINSILHAC-------- 56
           + P++ +Y  +I  +C    V +   L    QM++  L P  +T NS+L AC        
Sbjct: 264 LRPTTVTYNAVID-ACGKGGVDLRFTLGYFRQMLRDRLCPDRKTFNSLLSACSRAGHLED 322

Query: 57  -----EESYEFNLVRRIYP------MICH----------------HNLKPNSETFRSMIS 89
                +E     + R IY        IC                  N+KPN  T+ ++I 
Sbjct: 323 ARALFDEMIHLGIGRDIYTYNTFIDAICKCGNIELAMQVLLDMEAKNVKPNVVTYSTLID 382

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              K++ +D A  L + +K + +      YN ++A Y +        +V  EME + ++ 
Sbjct: 383 GYSKLEKYDEALKLYEKMKSLGIQLDRVCYNTVLAIYVKAGKYGEIAIVCDEMEDSGIEK 442

Query: 150 DSQTFSYLIHNCSNEE--DIIKYYEQ-LKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D+ T++ LI+    +   DI+ +  Q ++  G   +   +  LI+ Y+  G    A  V 
Sbjct: 443 DTVTYNSLINGYGKQGRLDIVSFLVQDMRRRGVAPSVLTYSTLIDIYSKAGMHGDAFNVY 502

Query: 207 LD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255
           LD  E  +K    + S+ +  LA +G    A+ +  ++ E G  ++P  V
Sbjct: 503 LDFKESGLKPDVVLFSSFIDTLAKNGLVEWALSLLNDMTEMG--IKPNVV 550



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 5/171 (2%)

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK-DVQGALMVLKEMEQ 144
           ++IS   +    + A  +L+ +K   L PT   YNA++    +   D++  L   ++M +
Sbjct: 238 ALISAYARSGLVNEAMGVLESMKGAGLRPTTVTYNAVIDACGKGGVDLRFTLGYFRQMLR 297

Query: 145 ANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEK 201
             + PD +TF+ L+  CS     ED    ++++   G     Y +   I+A   CG  E 
Sbjct: 298 DRLCPDRKTFNSLLSACSRAGHLEDARALFDEMIHLGIGRDIYTYNTFIDAICKCGNIEL 357

Query: 202 ARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLE 251
           A QV+LD E   VK      S L+   +   +  +A+ +YE++K  G  L+
Sbjct: 358 AMQVLLDMEAKNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMKSLGIQLD 408



 Score = 45.8 bits (107), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 43/208 (20%), Positives = 86/208 (41%), Gaps = 12/208 (5%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I   + +Y  LI       ++ +   +V+ M +  + PS  T ++++    ++       
Sbjct: 440 IEKDTVTYNSLINGYGKQGRLDIVSFLVQDMRRRGVAPSVLTYSTLIDIYSKAGMHGDAF 499

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +Y       LKP+   F S I    K    + A SLL+D+ EM + P    YN I+  +
Sbjct: 500 NVYLDFKESGLKPDVVLFSSFIDTLAKNGLVEWALSLLNDMTEMGIKPNVVTYNTIIDAF 559

Query: 127 FRKK-----DVQGALMVLKEMEQANV----KPDSQTFSYLIHNCSNEED---IIKYYEQL 174
            + K     D +   M +  +    +     P ++  S +       ++   I++ ++++
Sbjct: 560 GKSKVLSEEDPEAGEMGIVGVYNGQIIRAANPVTRGRSAIDVRMRRSQELYFILELFQKM 619

Query: 175 KSAGGQITKYVFMALINAYTTCGEFEKA 202
              G +     F A++NA + C  FE A
Sbjct: 620 VQQGVRPNVVTFSAILNACSRCNNFEDA 647


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 97/457 (21%), Positives = 184/457 (40%), Gaps = 48/457 (10%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+   Y  LI   C + ++  A  ++++M++  L P T T N ++    + ++ +   
Sbjct: 379 VQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAF 438

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   + +  + PN  ++  MI+   +  +   A +LL+++    L P A MY  ++ G+
Sbjct: 439 ELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGH 498

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLKSAGGQITK 183
            ++ ++  A   L++M +ANV PD   ++ LI   S     E+  +YY Q++  G    +
Sbjct: 499 SKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDE 558

Query: 184 YVFMALINAYTTCGEFEKARQV------------------VLDAEIPVKSRSEVKSALVS 225
           + +  LI+ Y   G  EKA Q+                  +L+         +V S L S
Sbjct: 559 FTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQS 618

Query: 226 ALASHGRTSD------------------AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
            L S  +  +                  A +V  E+++ G   +     +LI  L    +
Sbjct: 619 MLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIAD 678

Query: 268 LNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYH 325
           + + + LL+E+          C   LI    R   +S A ++   +  K           
Sbjct: 679 MEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTA 738

Query: 326 FSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWK 385
             +  C+       D+    DL + + D  G+ P     + L   C +A DL++A  + +
Sbjct: 739 LIDGNCKNG-----DITDAFDLYKEMLDR-GIAPDAFVYNVLATGCSDAADLEQALFLTE 792

Query: 386 EYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           E  N G   NV  +  +   F   G  +   KLL  M
Sbjct: 793 EMFNRGYA-NVSLFNTLVHGFCKRGKLQETEKLLHVM 828



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 139/322 (43%), Gaps = 17/322 (5%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  + P    Y  LI     + ++  A +   Q+ +  LVP   T + ++H   ++    
Sbjct: 516 KANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLE 575

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              ++   + +  LKPN++T+  ++    K  D++   S+L  +      P   +Y  ++
Sbjct: 576 KADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVI 635

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQ 180
               R ++++ A MVL E+E+  + PD   +S LI      ++ E  +   +++   G +
Sbjct: 636 RNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLE 695

Query: 181 ITKYVFMALINAYTTCGEFEKARQV----VLDAEIPVKSRSEVKSALVSALASHGRTSDA 236
                + ALI+ +   G+  +AR V    +    +P        +AL+     +G  +DA
Sbjct: 696 PGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVP---NCVTYTALIDGNCKNGDITDA 752

Query: 237 IIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILH 294
             +Y+E+ + G  + P A +   L    +   +L + + L EE+ +  Y        ++H
Sbjct: 753 FDLYKEMLDRG--IAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYANVSLFNTLVH 810

Query: 295 --CVRFKQLSSATDLLKQLKDK 314
             C R K L     LL  + D+
Sbjct: 811 GFCKRGK-LQETEKLLHVMMDR 831



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 79/428 (18%), Positives = 177/428 (41%), Gaps = 24/428 (5%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+   Y  L+       K   A D++++M+   + P+    ++++    +  +     
Sbjct: 344 LKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRAS 403

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           ++   +    L+P++ T+  ++  + +  D D A+ LL++++   ++P    Y  ++ G 
Sbjct: 404 KLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGL 463

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITK 183
            +  + + A  +L+EM    +KP++  ++ LI   S E +I    +  E++  A      
Sbjct: 464 CQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDL 523

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-----SALVSALASHGRTSDAII 238
           + + +LI   +T G  E+A +        V+ R  V      S L+      G    A  
Sbjct: 524 FCYNSLIKGLSTVGRMEEAEEYYAQ----VQKRGLVPDEFTYSGLIHGYCKTGNLEKADQ 579

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV----HDPDYWMDGCCRLILH 294
           +  ++  +G          L+E      +  ++  +L+ +      PD  + G   +I +
Sbjct: 580 LLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGI--VIRN 637

Query: 295 CVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDE 354
             R + +  A  +L +++      ++ +        C+IA     D++  + LL  +  E
Sbjct: 638 LSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIA-----DMEKAVGLLDEMAKE 692

Query: 355 LGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKS 414
            GL P   C + L+     + D+ RA  ++      GL  N ++Y  +      +G+   
Sbjct: 693 -GLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITD 751

Query: 415 ASKLLSKM 422
           A  L  +M
Sbjct: 752 AFDLYKEM 759



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 114/280 (40%), Gaps = 37/280 (13%)

Query: 2   HAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYE 61
           H     +PS+A    L+        V  A  VV  M    L P+    N +L     +  
Sbjct: 164 HRSRSPSPSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLRADA 223

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
             L+ ++   +    + P+  T+ + I  + K +DFD+A  + ++++  +       YN 
Sbjct: 224 MELLWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNV 283

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEEDIIKYYEQLKSAGGQ 180
           +++G  R   V+ A    +EM    + PD+ T+  L++  C           +LK A   
Sbjct: 284 MISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKG--------SRLKEA--- 332

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
                  AL++  +  G               +K    V   LV      G+T++A  + 
Sbjct: 333 ------KALLDEMSCSG---------------LKPNIVVYGTLVDGFMKEGKTAEAFDIL 371

Query: 241 EEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEV 278
           +E+  AG  ++P  ++   LI  L   G+L R  +LL+E+
Sbjct: 372 KEMISAG--VQPNKIMYDNLIRGLCKIGQLGRASKLLKEM 409


>gi|356554513|ref|XP_003545590.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g25630-like [Glycine max]
          Length = 632

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 130/290 (44%), Gaps = 15/290 (5%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M  +  + P+  +Y  LI   C +  +  A +VV +M    + P   T N+I  A  ++ 
Sbjct: 203 MSTEGNVKPNLKTYNMLIRALCKMENISEAWNVVYKMTASGMQPDVVTFNTIATAYAQNG 262

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           +      +   +  ++LKPN  T   +IS   +      A   +  +K++ + P   + N
Sbjct: 263 KTAQAEAMILEMQRNSLKPNERTCTIIISGYCREGKVQEALRFVYRMKDLGMQPNLIVLN 322

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSA 177
           +++ G+    D  G   VLK ME+  ++PD  T+S +++  S     E   + Y  +  +
Sbjct: 323 SLVNGFVDMMDRDGVDEVLKLMEEFQIRPDVITYSTIMNAWSQAGFLEKCKEIYNNMLKS 382

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDA 236
           G +   + +  L   Y    E EKA +++ +  +  V     + + ++S   S GR  +A
Sbjct: 383 GVKPDAHAYSILAKGYVRAQEMEKAEEMLTVMTKSGVHPNVVIFTTVISGWCSVGRMDNA 442

Query: 237 IIVYEEIKEAGCNLEPRAVIALI-------EHLNSEGELNRLIQLLEEVH 279
           + V++++ E G +   +    LI       +   +EG    ++Q++EE H
Sbjct: 443 MRVFDKMGEFGVSPNLKTFETLIWGYAEAKQPWKAEG----MLQIMEEFH 488



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 129/269 (47%), Gaps = 15/269 (5%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           K   A+ + + +++G   PS  T  ++L+A      F  +  I  ++    +KP+S  F 
Sbjct: 87  KPQEAIVIFQNLIEGGHQPSLATYTTLLNALTTQKYFKPIHSIVSLVEEKQMKPDSIFFN 146

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME-Q 144
           ++I+   +  + + A  ++  +KE  L P+A  YN ++ GY        ++ +L  M  +
Sbjct: 147 ALINAFAESGNMEDAKKVVQKMKESGLKPSACTYNTLIKGYGIAGKPDESMKLLDLMSTE 206

Query: 145 ANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKYVFMALINAYTTCGEFEK 201
            NVKP+ +T++ LI      E+I + +    ++ ++G Q     F  +  AY   G+  +
Sbjct: 207 GNVKPNLKTYNMLIRALCKMENISEAWNVVYKMTASGMQPDVVTFNTIATAYAQNGKTAQ 266

Query: 202 ARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI---- 256
           A  ++L+ +   +K      + ++S     G+  +A+     +K+ G  ++P  ++    
Sbjct: 267 AEAMILEMQRNSLKPNERTCTIIISGYCREGKVQEALRFVYRMKDLG--MQPNLIVLNSL 324

Query: 257 --ALIEHLNSEGELNRLIQLLEEVH-DPD 282
               ++ ++ +G ++ +++L+EE    PD
Sbjct: 325 VNGFVDMMDRDG-VDEVLKLMEEFQIRPD 352



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/255 (20%), Positives = 117/255 (45%), Gaps = 7/255 (2%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++ P S  +  LI    +   +  A  VV++M +  L PS  T N+++     + + +  
Sbjct: 137 QMKPDSIFFNALINAFAESGNMEDAKKVVQKMKESGLKPSACTYNTLIKGYGIAGKPDES 196

Query: 66  RRIYP-MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
            ++   M    N+KPN +T+  +I    K+++   A++++  +    + P    +N I  
Sbjct: 197 MKLLDLMSTEGNVKPNLKTYNMLIRALCKMENISEAWNVVYKMTASGMQPDVVTFNTIAT 256

Query: 125 GYFRK-KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQ 180
            Y +  K  Q   M+L EM++ ++KP+ +T + +I     E   ++ +++  ++K  G Q
Sbjct: 257 AYAQNGKTAQAEAMIL-EMQRNSLKPNERTCTIIISGYCREGKVQEALRFVYRMKDLGMQ 315

Query: 181 ITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
               V  +L+N +    + +   +V+ L  E  ++      S +++A +  G       +
Sbjct: 316 PNLIVLNSLVNGFVDMMDRDGVDEVLKLMEEFQIRPDVITYSTIMNAWSQAGFLEKCKEI 375

Query: 240 YEEIKEAGCNLEPRA 254
           Y  + ++G   +  A
Sbjct: 376 YNNMLKSGVKPDAHA 390



 Score = 38.1 bits (87), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 26/150 (17%), Positives = 59/150 (39%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           + +I P   +Y  ++        +    ++   M++  + P     + +      + E  
Sbjct: 346 EFQIRPDVITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDAHAYSILAKGYVRAQEME 405

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               +  ++    + PN   F ++IS    +   D+A  + D + E  + P    +  ++
Sbjct: 406 KAEEMLTVMTKSGVHPNVVIFTTVISGWCSVGRMDNAMRVFDKMGEFGVSPNLKTFETLI 465

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQT 153
            GY   K    A  +L+ ME+ +V+P   T
Sbjct: 466 WGYAEAKQPWKAEGMLQIMEEFHVQPKKST 495


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 97/495 (19%), Positives = 197/495 (39%), Gaps = 67/495 (13%)

Query: 12   ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPM 71
            ASY  +I + C L ++  A  ++  M      P   + +++++      E + V ++  +
Sbjct: 690  ASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEV 749

Query: 72   ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131
            +    LKPNS  + S+I L  +I     A     ++    ++P   +Y  ++ G+ ++ D
Sbjct: 750  MKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGD 809

Query: 132  VQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMA 188
            ++ A     EM   ++ PD  T++ +I       D++   K + ++   G +     F  
Sbjct: 810  IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTE 869

Query: 189  LINAYTTCGEFEKARQV------------------VLDA------------------EIP 212
            LIN Y   G  + A +V                  ++D                   +I 
Sbjct: 870  LINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 929

Query: 213  VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLI 272
            ++      +++V+ L   G   +A+ +  E + AG N +      L++     GE+++  
Sbjct: 930  LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 989

Query: 273  QLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQ 332
            ++L+E+            L    V F  L +   L   L    +D E  + +  ++    
Sbjct: 990  EILKEMLGKG--------LQPTIVTFNVLMNGFCLHGML----EDGEKLLNWMLAKGIAP 1037

Query: 333  IATTDPPDVQI-----GLDLLQFIKDEL---GLPPSRKCLDFLLGACVNARDLKRAHLIW 384
             ATT    V+       L     I  ++   G+ P  K  + L+     AR++K A  ++
Sbjct: 1038 NATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLF 1097

Query: 385  KEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQACKQTYTIPS 444
            +E +  G   +V +Y  + K FL       A ++  +M ++       + A K+ +   S
Sbjct: 1098 QEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREG------LAADKEIFDFFS 1151

Query: 445  LQKERGFEKDRDTLL 459
              K +G  K  DT++
Sbjct: 1152 DTKYKG--KRPDTIV 1164



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 97/209 (46%), Gaps = 4/209 (1%)

Query: 1    MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
            MH++ +ITP   +Y  +I+  C +  +  A  +  +M    L P + T   +++   ++ 
Sbjct: 820  MHSR-DITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAG 878

Query: 61   EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
                  R++  +      PN  T+ ++I    K  D DSA  LL ++ ++ L P    YN
Sbjct: 879  HMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYN 938

Query: 121  AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK---SA 177
            +I+ G  +  +++ A+ ++ E E A +  D+ T++ L+       ++ K  E LK     
Sbjct: 939  SIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGK 998

Query: 178  GGQITKYVFMALINAYTTCGEFEKARQVV 206
            G Q T   F  L+N +   G  E   +++
Sbjct: 999  GLQPTIVTFNVLMNGFCLHGMLEDGEKLL 1027



 Score = 45.1 bits (105), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 34/184 (18%), Positives = 80/184 (43%), Gaps = 13/184 (7%)

Query: 11   SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSI-----LHACEESYEFNLV 65
            + +Y  L+   C   ++  A +++++M+   L P+  T N +     LH   E  E    
Sbjct: 969  TVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGE---- 1024

Query: 66   RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             ++   +    + PN+ TF S++       +  +A ++  D+    + P    Y  ++ G
Sbjct: 1025 -KLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKG 1083

Query: 126  YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQIT 182
            + + ++++ A  + +EM+         T+S LI      +  +   + ++Q++  G    
Sbjct: 1084 HCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAAD 1143

Query: 183  KYVF 186
            K +F
Sbjct: 1144 KEIF 1147


>gi|125590524|gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japonica Group]
          Length = 414

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 126/281 (44%), Gaps = 14/281 (4%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTET----INSILHACEESYEFN 63
           +P   S+  +I   C + +V  AL++VE+M +    P T T    ++ +    E S    
Sbjct: 79  SPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHE 138

Query: 64  LVRRIY-PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           ++RR+    +C     PN  TF S+IS   K    + A ++ +D+    +MP    YN +
Sbjct: 139 VLRRLQRDGVC----MPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVL 194

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGG 179
           + GY +  D+  A+ V ++M +    PD  TFS LI     C   +D ++ +  +     
Sbjct: 195 INGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRI 254

Query: 180 QITKYVFMALINAYTTCGEFEKARQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDAI 237
           Q   Y F  +I++       ++A  ++  L+    +  ++ + + ++  L   G+  +A 
Sbjct: 255 QPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEAN 314

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           ++ + ++E GC  +      LI     +  ++  I    E+
Sbjct: 315 LIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEM 355



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/270 (20%), Positives = 120/270 (44%), Gaps = 6/270 (2%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQ-GELVPSTETINSILHACEESYEFNLVR 66
           +P + ++  L+   C   +V    +V+ ++ + G  +P+  T  S++    ++ +     
Sbjct: 114 SPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAM 173

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +Y  +    + PN+ T+  +I+   K+ D  SA  +   +  +   P    +++++ GY
Sbjct: 174 AVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGY 233

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITK 183
            R   +  AL +  +M Q  ++P+  TFS +IH+   +   ++ I    +L        +
Sbjct: 234 CRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQ 293

Query: 184 -YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
            +++  +I+    CG+ ++A  +     E   +      + L+       R S+AI+ + 
Sbjct: 294 AFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFH 353

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRL 271
           E+ EAGC+ +   V   I  L   G  N +
Sbjct: 354 EMVEAGCSPDSITVNCFISCLLKAGMPNEV 383



 Score = 39.3 bits (90), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 68/342 (19%), Positives = 124/342 (36%), Gaps = 39/342 (11%)

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
           M  H+   P++     ++S        D++ +LL    E      A  YN +M+    + 
Sbjct: 1   MTTHYGYSPDARFLSFLVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRG 60

Query: 131 DVQGALMVLKEMEQANV-KPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVF 186
            V   + + +   Q  V  PD  +F+ +I        +   ++  E++   G        
Sbjct: 61  RVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTH 120

Query: 187 MALINAYTTCGEFEKARQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
             L++      E  +  +V+  L  +          ++++S     G+  DA+ VY ++ 
Sbjct: 121 NILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMV 180

Query: 245 EAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVH----DPDY-----WMDGCCRLIL 293
            +G  + P  V    LI      G+L   +++ +++      PD       +DG CR   
Sbjct: 181 ASG--IMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRC-- 236

Query: 294 HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKD 353
                 QL    D L+   D  +       Y FS I   +   +  D  IGL       +
Sbjct: 237 -----GQLD---DALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGL------LN 282

Query: 354 ELGLPPSRKCLDFLLGACVN----ARDLKRAHLIWKEYENAG 391
           EL L P      F+    ++       +  A+LI K  E  G
Sbjct: 283 ELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKG 324


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 79/421 (18%), Positives = 170/421 (40%), Gaps = 47/421 (11%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
            P    +  L +   +L  +  A     +M +  ++P   + N+ LH   ++ E +L R 
Sbjct: 59  VPGFGVFDALFSVLVELGMLEAAGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRD 118

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
            +  +    + P   T+  MI    K  D  +A SL + +K+M L P    YN ++ GY 
Sbjct: 119 FFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYG 178

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKY 184
           +   +  ++ + +EM+    +PD  T++ LI++    + +++   ++ ++K    +    
Sbjct: 179 KIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVI 238

Query: 185 VFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
            +  LI+A    G  + A +  +D   + +       S+L+ A    G   +A ++ +E+
Sbjct: 239 SYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEM 298

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW--MDGCCRLILHCVRFKQL 301
            +   +L       L++ L  EG +N   +L   +        +     LI   ++ + +
Sbjct: 299 LQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSM 358

Query: 302 SSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSR 361
             A +L  ++++K                        PD+ +   ++             
Sbjct: 359 DKAMELFNEMREK---------------------DIKPDILLWGTIVW------------ 385

Query: 362 KCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSK 421
                  G C  ++ L+   +I  E + +G+  N + Y  +  A+  +GNR  A  LL +
Sbjct: 386 -------GLCSESK-LEECKIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEE 437

Query: 422 M 422
           M
Sbjct: 438 M 438



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/284 (18%), Positives = 132/284 (46%), Gaps = 12/284 (4%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
            ++ + P+  +Y  LI  +C    +  A  + ++M+Q  +  +  T  ++L    E    
Sbjct: 264 TRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMM 323

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           N    ++  +    + PN + + ++I  ++K++  D A  L ++++E ++ P   ++  I
Sbjct: 324 NEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTI 383

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGG 179
           + G   +  ++   +++ EM+++ +  +   ++ L+       N  + I   E+++  G 
Sbjct: 384 VWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGT 443

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIP---VKSRSEVKSALVSALASHGRTSDA 236
           ++T   F ALI+     G  ++A  +     +P   ++    V +AL+  L  +    DA
Sbjct: 444 EVTVVTFCALIDGLCKRGLVQEA--IYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDA 501

Query: 237 IIVYEEIKEAGCNLEPRAVIALIE----HLNSEGELNRLIQLLE 276
             +++E+++     +  A  A+I+    H N +  LN   +++E
Sbjct: 502 KKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEALNMRNKMME 545



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/319 (18%), Positives = 135/319 (42%), Gaps = 20/319 (6%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  LI   C    +  A +   +M   +L P+  + ++++ A  +     +  + 
Sbjct: 200 PDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKF 259

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    L PN  T+ S+I  N K  +   A+ L D++ + ++      Y  ++ G   
Sbjct: 260 FVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCE 319

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYV 185
           +  +  A  + + M +A V P+ Q ++ LIH      + +  ++ + +++    +    +
Sbjct: 320 EGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILL 379

Query: 186 FMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +  ++    +  + E+ + ++ +  E  + +   + + L+ A    G  ++AI + EE++
Sbjct: 380 WGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMR 439

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY---------WMDGCCRLILHC 295
           + G  +      ALI+ L   G +   I     + D D           +DG C+   +C
Sbjct: 440 DLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCK--NNC 497

Query: 296 VRFKQLSSATDLLKQLKDK 314
           +       A  L  +++DK
Sbjct: 498 I-----GDAKKLFDEMQDK 511



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 128/288 (44%), Gaps = 18/288 (6%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CE----- 57
           K+ +TP   +Y  LI     +  +  ++ + E+M      P   T N+++++ C+     
Sbjct: 160 KMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGML 219

Query: 58  ESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTAS 117
            ++EF      +  +   +LKPN  ++ ++I    K      A     D+  + L+P   
Sbjct: 220 RAFEF------FREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEF 273

Query: 118 MYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA 177
            Y++++    +  ++  A M+  EM Q +V  +  T++ L+     EE ++   E+L  A
Sbjct: 274 TYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLC-EEGMMNEAEELFRA 332

Query: 178 GGQ--ITKYV--FMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGR 232
            G+  +T  +  + ALI+ +      +KA ++  +  E  +K    +   +V  L S  +
Sbjct: 333 MGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESK 392

Query: 233 TSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
             +  I+  E+KE+G    P     L++     G     I LLEE+ D
Sbjct: 393 LEECKIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRD 440



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/107 (21%), Positives = 50/107 (46%), Gaps = 3/107 (2%)

Query: 75  HNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQG 134
           H+L+PN   + ++I    K      A  L D++++ N++P    Y A++ G  +  + Q 
Sbjct: 476 HDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQE 535

Query: 135 ALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAG 178
           AL +  +M +  ++ D   ++ L+     C   +   K+  ++   G
Sbjct: 536 ALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKG 582


>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 1627

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 136/300 (45%), Gaps = 18/300 (6%)

Query: 27   VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY-PMICHHNLKPNSETFR 85
            V  A+ +  Q+   +  P  +  NS++       ++  V ++Y  M    +  P++ T+ 
Sbjct: 1165 VRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYS 1224

Query: 86   SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
            ++IS   K+   DSA  LL+++KE+ + PT  +Y  ++A +F+  D  GAL + +EM   
Sbjct: 1225 ALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQ 1284

Query: 146  NVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKYVFMALINAYTTCGEFEKA 202
              +PD  T++ LI        I + Y    +++  G +        +IN     G  + A
Sbjct: 1285 YCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDA 1344

Query: 203  RQVVLDAE----IP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIA 257
             ++  + E    IP V + + +  AL     S  R S+    +E +KE+G +        
Sbjct: 1345 MKLFQEMETLRCIPSVVTYNTIIKAL---FESKSRASEVPSWFERMKESGISPSSFTYSI 1401

Query: 258  LIEHLNSEGELNRLIQLLEEVHDPDYWMDGC----CRLILHCVRFKQLSSATDLLKQLKD 313
            LI+       + + + LLEE+ +  +    C    C LI    + K+   A +L ++LK+
Sbjct: 1402 LIDGFCKTNRMEKAMMLLEEMDEKGF--PPCPAAYCSLIDALGKAKRYDLACELFQELKE 1459



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 80/409 (19%), Positives = 176/409 (43%), Gaps = 21/409 (5%)

Query: 9    PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
            P + +Y  LI+  C L +   A+ ++ +M +  + P+T+    ++    +  + +    +
Sbjct: 1218 PDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSL 1277

Query: 69   YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
            +  + H   +P+  T+  +I    K    D AY    +++     P     N ++    +
Sbjct: 1278 FEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGK 1337

Query: 129  KKDVQGALMVLKEMEQANVKPDSQTFSYLI----HNCSNEEDIIKYYEQLKSAGGQITKY 184
               +  A+ + +EME     P   T++ +I     + S   ++  ++E++K +G   + +
Sbjct: 1338 AGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSF 1397

Query: 185  VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSA---LVSALASHGRTSDAIIVYE 241
             +  LI+ +      EKA  ++L  E+  K      +A   L+ AL    R   A  +++
Sbjct: 1398 TYSILIDGFCKTNRMEKA--MMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQ 1455

Query: 242  EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYWMDGCCRLILHCVR 297
            E+KE   +   R    +I+HL   G L+  I + +E++     PD +      L+    R
Sbjct: 1456 ELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNA--LMSGLAR 1513

Query: 298  FKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGL 357
               L  A   ++++++     ++     ++ I   +A T  P     +++L  +K    +
Sbjct: 1514 TGMLDEALSTMRRMQEHGCIPDI---NSYNIILNGLAKTGGP--HRAMEMLSNMKQST-V 1567

Query: 358  PPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAF 406
             P     + +LGA  +A   + A  + KE    G  Y++++Y  + +A 
Sbjct: 1568 RPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAI 1616



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/282 (20%), Positives = 117/282 (41%), Gaps = 5/282 (1%)

Query: 4    KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
            ++ + P++  Y  LI         H AL + E+M      P   T   ++    ++   +
Sbjct: 1248 EIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRID 1307

Query: 64   LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
                 +  +     +P++    +MI+   K    D A  L  +++ +  +P+   YN I+
Sbjct: 1308 EAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTII 1367

Query: 124  AGYFRKKDVQGALMV-LKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGG 179
               F  K     +    + M+++ + P S T+S LI   C     E  +   E++   G 
Sbjct: 1368 KALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGF 1427

Query: 180  QITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAII 238
                  + +LI+A      ++ A ++  +  E    S + V + ++  L   GR  DAI 
Sbjct: 1428 PPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAIN 1487

Query: 239  VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
            +++E+ + GC  +  A  AL+  L   G L+  +  +  + +
Sbjct: 1488 MFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQE 1529



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/203 (19%), Positives = 93/203 (45%), Gaps = 3/203 (1%)

Query: 7    ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
            I+PSS +Y  LI   C   ++  A+ ++E+M +    P      S++ A  ++  ++L  
Sbjct: 1392 ISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLAC 1451

Query: 67   RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
             ++  +  +    ++  +  MI    K    D A ++ D++ ++   P    YNA+M+G 
Sbjct: 1452 ELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGL 1511

Query: 127  FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK--- 183
             R   +  AL  ++ M++    PD  +++ +++  +      +  E L +      +   
Sbjct: 1512 ARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDV 1571

Query: 184  YVFMALINAYTTCGEFEKARQVV 206
              +  ++ A +  G FE+A +++
Sbjct: 1572 VSYNTVLGALSHAGMFEEASKLM 1594


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/316 (20%), Positives = 135/316 (42%), Gaps = 39/316 (12%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           KL I P + ++  LI   C+  K+  A+ +  +MV     P+  + N++++   ++    
Sbjct: 159 KLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTI 218

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
           +  R++  +  +  KPN  T+ ++I    K +  + A   L ++ +  + P    YN I+
Sbjct: 219 MAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTIL 278

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQ 180
            G+     +  A  + KEM   NV PD+ TF+ L+     E  + +     E +   G +
Sbjct: 279 HGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAE 338

Query: 181 ITKYVFMALINAYTTCGEFEKARQV------------------VLDAEIPVKSRSEVK-- 220
              Y + AL++ Y    + ++A +V                  +++     K  +E K  
Sbjct: 339 PNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRL 398

Query: 221 ----------------SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
                           S L+  L   GR  +A+ +++E+  +G   +  A   L++    
Sbjct: 399 LSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCK 458

Query: 265 EGELNRLIQLLEEVHD 280
            G L+  ++LL+E+H+
Sbjct: 459 HGHLDEALKLLKEMHE 474



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 70/365 (19%), Positives = 149/365 (40%), Gaps = 30/365 (8%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
            ++P++ TF ++I+          A  L +++      P    YN ++ G  +  +   A
Sbjct: 161 GIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMA 220

Query: 136 LMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYVFMALINA 192
           + V ++MEQ   KP+  T++ +I + C +    + +++  ++   G       +  +++ 
Sbjct: 221 VRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHG 280

Query: 193 YTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLE 251
           + + G+  +A ++  +     V   +   + LV  L   G  S+A  V E + E G   E
Sbjct: 281 FCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGA--E 338

Query: 252 PRAVI--ALIEHLNSEGELNRLIQLLE---------EVHDPDYWMDGCCRLILHCVRFKQ 300
           P A    AL++      +++  I++L           +   +  ++G C+        K+
Sbjct: 339 PNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCK-------SKR 391

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS 360
           ++ A  LL ++ +K    +        +  CQ+    P +    L+L + +    GL P 
Sbjct: 392 MNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGR--PREA---LNLFKEMCSS-GLLPD 445

Query: 361 RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420
                 LL        L  A  + KE     +  N++ Y  + +    +G  + A +L S
Sbjct: 446 LMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFS 505

Query: 421 KMPKD 425
           K+  D
Sbjct: 506 KLSAD 510



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/150 (21%), Positives = 74/150 (49%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P++ +Y  L+   C   ++  A+ V+  M+     P+  + N +++   +S   N  +R+
Sbjct: 339 PNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRL 398

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +   NL P++ T+ +++    ++     A +L  ++    L+P    Y+ ++ G+ +
Sbjct: 399 LSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCK 458

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
              +  AL +LKEM +  +KP+   ++ LI
Sbjct: 459 HGHLDEALKLLKEMHERRIKPNIILYTILI 488



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/164 (20%), Positives = 75/164 (45%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  L+   C    +  AL ++++M +  + P+      ++     + +  + +
Sbjct: 442 LLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAK 501

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +    ++P+  T+  MI   +K    D AY     +++   +P +  YN I+ G+
Sbjct: 502 ELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGF 561

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY 170
            + +D   A+ ++ EM       DS TF  L+   S++E I ++
Sbjct: 562 LQNQDSSTAIQLIDEMVGKRFSADSSTFQMLLDLESHDEIISRF 605



 Score = 46.2 bits (108), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 30/150 (20%), Positives = 67/150 (44%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+ +SY  LI   C   +++ A  ++ +M +  L P T T ++++    +         +
Sbjct: 374 PNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNL 433

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +C   L P+   +  ++    K    D A  LL ++ E  + P   +Y  ++ G F 
Sbjct: 434 FKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFI 493

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
              ++ A  +  ++    ++PD  T++ +I
Sbjct: 494 AGKLEVAKELFSKLSADGIRPDIWTYNVMI 523



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 47/228 (20%), Positives = 93/228 (40%), Gaps = 13/228 (5%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
           N +P+   F   +    K K + SA SL + +    +       N ++    R   V  A
Sbjct: 91  NPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFA 150

Query: 136 LMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINA 192
           + V+ +M +  ++PD+ TF+ LI+   NE  I   +  + ++  +G +     +  +IN 
Sbjct: 151 VSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVING 210

Query: 193 YTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLE 251
               G    A +V    E      + V  + ++ +L      ++A+    E+ + G   +
Sbjct: 211 LCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPD 270

Query: 252 PRAVIALIEHLNSEGELNRLIQLLEEVHD----PD-----YWMDGCCR 290
                 ++    S G+LN   +L +E+      PD       +DG C+
Sbjct: 271 VVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCK 318


>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 114/245 (46%), Gaps = 4/245 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P++ +Y  LI+  C+   V  A  V  +M +  +     T N ++       +F    
Sbjct: 259 IVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAV 318

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           ++   +    L PN  T+  +I+    ++  DSA  L + LK   L PT   YN ++AGY
Sbjct: 319 KLVHKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGY 378

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITK 183
            + +++ GAL ++KEME+  + P   T++ LI      ++ E   + +  ++ +G     
Sbjct: 379 SKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPDV 438

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           Y +  L++     G  ++A ++     E+ ++  S + + ++      G +  A+ +  E
Sbjct: 439 YTYSVLLHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNE 498

Query: 243 IKEAG 247
           + ++G
Sbjct: 499 MVQSG 503



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 82/397 (20%), Positives = 158/397 (39%), Gaps = 44/397 (11%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL  +  M+    VP + T N++L     S  F+    I+  +    +  ++ +F  MI 
Sbjct: 108 ALTFLHHMIHEGHVPLSNTFNNLLCLLIRSNYFDKAWWIFNEL-KSKVVLDAYSFGIMIK 166

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              +   F   + LL  L+E  L P   +Y  ++ G  +  +V  A  +  +M +  + P
Sbjct: 167 GCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKDGNVMLAKNLFCKMNRLGLVP 226

Query: 150 DSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           +  T+S L++    +    +  + YE +K +G     Y +  LI+ Y   G  +KA +V 
Sbjct: 227 NPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNDGMVDKAFKVF 286

Query: 207 LDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
            +  E  +       + L+  L    +  +A+ +  ++ + G  L P  V          
Sbjct: 287 AEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVG--LSPNIV---------- 334

Query: 266 GELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYH 325
              N LI             +G C +       +++ SA  L  QLK       +     
Sbjct: 335 -TYNILI-------------NGFCDV-------RKMDSAVRLFNQLKSSGLSPTLVT--- 370

Query: 326 FSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWK 385
           ++ +    +  +  ++   LDL++ + +E  + PS+     L+ A       ++A  +  
Sbjct: 371 YNTLIAGYSKVE--NLAGALDLVKEM-EERCIAPSKVTYTILIDAFARLNHTEKACEMHS 427

Query: 386 EYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
             E +GL  +V +Y  +       GN K ASKL   +
Sbjct: 428 LMEKSGLVPDVYTYSVLLHGLCVHGNMKEASKLFKSL 464



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 63/144 (43%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I PS  +Y  LI     L     A ++   M +  LVP   T + +LH            
Sbjct: 399 IAPSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEAS 458

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++  +   +L+PNS  + +MI    K      A  LL+++ +  ++P  + + + +   
Sbjct: 459 KLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGMVPNVASFCSTIGLL 518

Query: 127 FRKKDVQGALMVLKEMEQANVKPD 150
            R +  + A ++L +M  + +KP 
Sbjct: 519 CRDEKWKEAELLLGQMINSGLKPS 542


>gi|414587035|tpg|DAA37606.1| TPA: hypothetical protein ZEAMMB73_100135 [Zea mays]
          Length = 547

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 128/281 (45%), Gaps = 14/281 (4%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN---- 63
           +P   S+  +I   C +     AL++VE+M +    P T T N ++     + + N    
Sbjct: 212 SPDVWSFNVVIKGVCRMGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHE 271

Query: 64  LVRRIY-PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           ++RR+    +C     PN+ T+ S+IS   K    + A S+ +D+ E    P    YN +
Sbjct: 272 VLRRLQRDGVC----MPNAVTYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVL 327

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGG 179
           + GY +  D++ A+ + +++   +  PD  TFS LI     C   +D  + ++++     
Sbjct: 328 INGYGKALDMESAVRMYRQLILRHCPPDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHI 387

Query: 180 QITKYVFMALINAYTTCGEFEKARQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDAI 237
           Q   Y F  +I++        +A  ++  L+    +  ++ + + ++  L   G+  +A 
Sbjct: 388 QPNVYTFSIIIHSLCKQNRSAEALDILRELNMRTDIAPQTFIYNPVIDILCKGGKVDEAN 447

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           ++  ++KE GC+ +      LI     +G +   I L  ++
Sbjct: 448 LIVTDMKEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKM 488



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/319 (19%), Positives = 120/319 (37%), Gaps = 81/319 (25%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMV-QGELVPSTE---------------- 47
           L + PS  SY  +I + C   +   AL + +QM+ Q   +P                   
Sbjct: 102 LSVPPSEQSYIHVIAFLCRSGRHRDALKLFDQMMDQSGYLPEAGFFSFVAGSCTNAGLLD 161

Query: 48  ------TINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI----------SLN 91
                 T  S L  C E Y +N +  +  +I H   +     F S I          S N
Sbjct: 162 AASTLLTKGSRLGCCIEPYAYNYL--LNSLIAHGRAQDAVALFESWIQDGLYSPDVWSFN 219

Query: 92  VKIK------DFDSAYSLLDDLKEMN---------------------------------- 111
           V IK      +F  A  L++ + E                                    
Sbjct: 220 VVIKGVCRMGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLRRLQRD 279

Query: 112 --LMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI-- 167
              MP A  Y ++++GY +   ++ A+ V  +M ++  +P++ T++ LI+      D+  
Sbjct: 280 GVCMPNAVTYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDMES 339

Query: 168 -IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVS 225
            ++ Y QL           F +LI+ Y  CG+ + A+++  +  +  ++      S ++ 
Sbjct: 340 AVRMYRQLILRHCPPDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIH 399

Query: 226 ALASHGRTSDAIIVYEEIK 244
           +L    R+++A+ +  E+ 
Sbjct: 400 SLCKQNRSAEALDILRELN 418


>gi|357124917|ref|XP_003564143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Brachypodium distachyon]
          Length = 1285

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/287 (20%), Positives = 128/287 (44%), Gaps = 6/287 (2%)

Query: 6   EITPSSASYKKLITYSC--DLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           E+ P   S+  LI        L    A D++ ++ Q  L P   T N+++ AC +    +
Sbjct: 93  ELEPDLVSFNTLINARAKSGCLAPGSAFDLLLEVRQVGLRPDVITYNTLISACSQGSNLD 152

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               ++  +     +P+  T+ +M+S++ +      A  +  +L E    P A  YN+++
Sbjct: 153 DAVAVFEEMMASECRPDLWTYNAMVSVHGRCGKAQDAERMFRELVEKGFKPDAVTYNSLL 212

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQ 180
             + ++ D      V +E+ +A  K D  T++ +IH       +   +  Y+++++ G  
Sbjct: 213 YAFAKEGDADTVERVCEELVRAGFKKDGITYNTMIHMYGKMGRLDLALGLYDEMRALGCT 272

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
                +  LI++         A +V+ + A+  +K      SAL+ A A  GR  +A+  
Sbjct: 273 PDAVTYTVLIDSLGKMDRISDAGKVLEEMADAGLKPTLVTFSALICAYAKGGRREEAVRT 332

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
           +  +  +G   +  A + +++ +   G++ +L+ L + + +  Y  D
Sbjct: 333 FSHMVASGVKPDRLAYLVMLDIIARSGDMRKLMALYQTMMNDGYRPD 379



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 93/439 (21%), Positives = 178/439 (40%), Gaps = 58/439 (13%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           E  P   +Y  +++      K   A  +  ++V+    P   T NS+L+A  +  + + V
Sbjct: 165 ECRPDLWTYNAMVSVHGRCGKAQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTV 224

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            R+   +     K +  T+ +MI +  K+   D A  L D+++ +   P A  Y  ++  
Sbjct: 225 ERVCEELVRAGFKKDGITYNTMIHMYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDS 284

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQIT 182
             +   +  A  VL+EM  A +KP   TFS LI         E+ ++ +  + ++G +  
Sbjct: 285 LGKMDRISDAGKVLEEMADAGLKPTLVTFSALICAYAKGGRREEAVRTFSHMVASGVKPD 344

Query: 183 KYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAII 238
           +  ++ +++     G+  K     + ++ D   P  +  +V   +++ALA  G   D I 
Sbjct: 345 RLAYLVMLDIIARSGDMRKLMALYQTMMNDGYRPDNALYQV---MLAALA-KGNEYDEIE 400

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLI-QLLEEVHDPD----------YWMDG 287
              +  E  C + P+ V +++       +  +L+ +   + H+PD          Y   G
Sbjct: 401 AVVQDMEVVCQMNPQLVSSILIKAECISQGAKLLKKACLQGHEPDSKSLLSILDAYETTG 460

Query: 288 ------------------CCRLILHC-----VRFKQLSSATDLLKQLK----DKFKDDEM 320
                              C LI  C      + +++++A      ++      F  D  
Sbjct: 461 KHEEGLSLLQFIREHVPSSCNLISECSIMLLCKNQKIAAAMQEYSSMQMLKCGSFGQDCN 520

Query: 321 AMEYHFSEIFC-QIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKR 379
             EY    I C + A   P   Q+  D +QFI    G+ PSRK  + ++ A       + 
Sbjct: 521 LYEYL---ITCLEEAEFFPEASQVFSD-MQFI----GIEPSRKIYESMISAYCKLGFPET 572

Query: 380 AHLIWKEYENAGLPYNVLS 398
           AH +  E   +G+  N+LS
Sbjct: 573 AHQLMDEAVQSGISLNILS 591



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 69/339 (20%), Positives = 141/339 (41%), Gaps = 17/339 (5%)

Query: 82  ETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ--GALMVL 139
           + F +M+ +  +   FD    LLD ++   L P    +N ++    +   +    A  +L
Sbjct: 64  QVFNAMMGVYARSGRFDDVRQLLDAMRGQELEPDLVSFNTLINARAKSGCLAPGSAFDLL 123

Query: 140 KEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTC 196
            E+ Q  ++PD  T++ LI  C   SN +D +  +E++ ++  +   + + A+++ +  C
Sbjct: 124 LEVRQVGLRPDVITYNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMVSVHGRC 183

Query: 197 GEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255
           G+ + A ++  +  E   K  +   ++L+ A A  G       V EE+  AG   +    
Sbjct: 184 GKAQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGITY 243

Query: 256 IALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL--HCVRFKQLSSATDLLKQLKD 313
             +I      G L+  + L +E+       D     +L     +  ++S A  +L+++ D
Sbjct: 244 NTMIHMYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGKVLEEMAD 303

Query: 314 KFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVN 373
                 +     FS + C  A     +  +       +    G+ P R     +L     
Sbjct: 304 AGLKPTLVT---FSALICAYAKGGRREEAV-RTFSHMVAS--GVKPDRLAYLVMLDIIAR 357

Query: 374 ARDLKRAHLIWKEYENAGL-PYNVLSYLWMYKAFLASGN 411
           + D+++   +++   N G  P N L  + +  A LA GN
Sbjct: 358 SGDMRKLMALYQTMMNDGYRPDNALYQVML--AALAKGN 394



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 56/285 (19%), Positives = 119/285 (41%), Gaps = 41/285 (14%)

Query: 9    PSSASYKKLITYSCDLLKVH-VALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
            P+   Y+ +I+  C   +   V L VVE M +    P    +N++L     +  F+    
Sbjct: 727  PNMHIYRSMISLLCRNKRYRDVELMVVE-MERAGFEPDLTILNTLLLMYTGNGNFDKTVE 785

Query: 68   IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA--- 124
            +Y  I    L+PN +T+ ++I +  +    +  ++LL+++ +  L P    Y +++A   
Sbjct: 786  VYHSILEAGLEPNEDTYNTLIVMYSRNLRPEEGFTLLNEMGKKGLTPKLESYKSLLAASG 845

Query: 125  ------------------GYFRKKDVQGALM--------------VLKEMEQANVKPDSQ 152
                              GY   + +   LM              +L  M++  ++P   
Sbjct: 846  KAKLWEQAEQLFEEIRSKGYRLNRSLYHMLMKIYRDACNHSKAEQLLASMKEDGIEPTIA 905

Query: 153  TFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA 209
            T   L+ +     + ++  K    LKS+  +++   +  + NAY   G++      +L+ 
Sbjct: 906  TMHILMTSYGTAGHPDEAEKVLNSLKSSSLEVSTLPYSTVFNAYLKNGDYNLGITKLLEM 965

Query: 210  EI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPR 253
            +   VK   +V +  + A +   RT+DAI++   +++   +L  R
Sbjct: 966  KADGVKPDHQVWTCFIRAASLCERTADAILLLNSLRDCEFDLPIR 1010



 Score = 45.1 bits (105), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 38/196 (19%), Positives = 94/196 (47%), Gaps = 14/196 (7%)

Query: 97  FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD--SQTF 154
           F  A  +  D++ + + P+  +Y ++++ Y +    + A  ++ E  Q+ +  +  S   
Sbjct: 535 FPEASQVFSDMQFIGIEPSRKIYESMISAYCKLGFPETAHQLMDEAVQSGISLNILSSRV 594

Query: 155 SYL-----IHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV--VL 207
           + +     I    + E+ +K  +Q  S    I + ++ ALI+AY   G +E AR V  ++
Sbjct: 595 TMIEAYGKIKLWQHAENFVKGLKQEPS----IDRRIWNALIHAYAESGLYEHARAVFDIM 650

Query: 208 DAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
             + P+ +   V + ++ AL   GR  +  ++ +E+++ G  +    VI +++     G+
Sbjct: 651 IEKGPLPTIDSV-NGMMRALIIDGRLDELYVIVQELQDMGFKISKSTVILMLDAFTKAGD 709

Query: 268 LNRLIQLLEEVHDPDY 283
           +  ++++   + +  Y
Sbjct: 710 IFEVMKIYNGMKEAGY 725



 Score = 42.7 bits (99), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 50/250 (20%), Positives = 106/250 (42%), Gaps = 18/250 (7%)

Query: 2    HAKLE--ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEES 59
            H+ LE  + P+  +Y  LI      L+      ++ +M +  L P  E+  S+L A  ++
Sbjct: 788  HSILEAGLEPNEDTYNTLIVMYSRNLRPEEGFTLLNEMGKKGLTPKLESYKSLLAASGKA 847

Query: 60   YEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMY 119
              +    +++  I     + N   +  ++ +     +   A  LL  +KE  + PT +  
Sbjct: 848  KLWEQAEQLFEEIRSKGYRLNRSLYHMLMKIYRDACNHSKAEQLLASMKEDGIEPTIATM 907

Query: 120  NAIMAGYFRKKDVQGALMVLKEMEQANVK----PDSQTFSYLIHNCSNEEDIIKYYEQLK 175
            + +M  Y        A  VL  ++ ++++    P S  F+  + N      I K  E +K
Sbjct: 908  HILMTSYGTAGHPDEAEKVLNSLKSSSLEVSTLPYSTVFNAYLKNGDYNLGITKLLE-MK 966

Query: 176  SAGGQITKYVFMALINAYTTCGEFEKARQVVL--------DAEIPVKSRSEVKSALVSAL 227
            + G +    V+   I A + C   E+    +L        + ++P++  +E  S+L++ +
Sbjct: 967  ADGVKPDHQVWTCFIRAASLC---ERTADAILLLNSLRDCEFDLPIRLLTERTSSLLTEV 1023

Query: 228  ASHGRTSDAI 237
            ++     DA+
Sbjct: 1024 SNFLEELDAL 1033



 Score = 39.7 bits (91), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 60/313 (19%), Positives = 116/313 (37%), Gaps = 47/313 (15%)

Query: 45   STETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL---NVKIKD----- 96
            S  T+  +L A  ++ +   V +IY  +      PN   +RSMISL   N + +D     
Sbjct: 693  SKSTVILMLDAFTKAGDIFEVMKIYNGMKEAGYLPNMHIYRSMISLLCRNKRYRDVELMV 752

Query: 97   ---------------------------FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
                                       FD    +   + E  L P    YN ++  Y R 
Sbjct: 753  VEMERAGFEPDLTILNTLLLMYTGNGNFDKTVEVYHSILEAGLEPNEDTYNTLIVMYSRN 812

Query: 130  KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVF 186
               +    +L EM +  + P  +++  L+         E   + +E+++S G ++ + ++
Sbjct: 813  LRPEEGFTLLNEMGKKGLTPKLESYKSLLAASGKAKLWEQAEQLFEEIRSKGYRLNRSLY 872

Query: 187  MALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
              L+  Y       KA Q++    E  ++        L+++  + G   +A  V   +K 
Sbjct: 873  HMLMKIYRDACNHSKAEQLLASMKEDGIEPTIATMHILMTSYGTAGHPDEAEKVLNSLKS 932

Query: 246  AGCNLEPRAVIALIEHLNSEGELN----RLIQLLEEVHDPDYWMDGC-CRLILHCVRFKQ 300
            +   +       +       G+ N    +L+++  +   PD+ +  C  R    C R   
Sbjct: 933  SSLEVSTLPYSTVFNAYLKNGDYNLGITKLLEMKADGVKPDHQVWTCFIRAASLCER--- 989

Query: 301  LSSATDLLKQLKD 313
             + A  LL  L+D
Sbjct: 990  TADAILLLNSLRD 1002


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 118/294 (40%), Gaps = 40/294 (13%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  SY  +I   C   KVH  + ++EQM+    VP   T N+I+ A  ++Y  ++   +
Sbjct: 393 PNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYEL 452

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL-KEMNLMPTASMYNAIMAGYF 127
           + +I      PN  T+ S++    K + FD A  LL ++ ++    P    YN ++ G  
Sbjct: 453 FNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLC 512

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLKSAGGQITKY 184
           + K V  A  +  +M    + PD  T+S +I +       ++     E +   G      
Sbjct: 513 KSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAI 572

Query: 185 VFMALINAYTTCGEFEKARQV------------VLDAEIPV---KSRSEVKSA------- 222
            +  LI+ +   G  +KA ++            V+   I +     R  ++ A       
Sbjct: 573 TYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETM 632

Query: 223 --------------LVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
                         L+       RT DA+ ++E +++ GC  +      L+ HL
Sbjct: 633 LRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLVGHL 686



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/280 (21%), Positives = 120/280 (42%), Gaps = 5/280 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  SY  ++   C   +V  AL ++EQMV     P   +  ++++   +  + +   R+
Sbjct: 77  PNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRV 136

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +     +PN  T+ +++    ++ D D A  L+  + E    P A  YN IM G   
Sbjct: 137 MDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCS 196

Query: 129 KKDVQGALMVLKEMEQ-ANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKY 184
            + +  AL + KEME+  +  PD  T+S ++ +       +D  +  E + S G      
Sbjct: 197 GRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVV 256

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEI 243
            + +L++     G+ ++A  ++        S + V  + ++      GR  +A  + EE+
Sbjct: 257 TYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEM 316

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY 283
            + GC         L++     G+    I L+E + +  Y
Sbjct: 317 VDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGY 356



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/279 (19%), Positives = 134/279 (48%), Gaps = 9/279 (3%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVRR 67
           P S +Y  +I       ++  A+ ++E+MV     P+  + N++LH  C+ +   N +  
Sbjct: 42  PDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWL 101

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +  M+      P+  ++ ++I+   K+   D A  ++D + +    P    Y  ++ G+ 
Sbjct: 102 LEQMV-MRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFC 160

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITK- 183
           R  D+ GA+ ++++M +   +P++ T++ ++H  CS    +  ++ +++++ +G      
Sbjct: 161 RVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDV 220

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK--SALVSALASHGRTSDAIIVYE 241
           + +  ++++    G+ + A ++V +A +       V   S+L+  L   G+  +A  + +
Sbjct: 221 FTYSTIVDSLVKSGKVDDACRLV-EAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQ 279

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
            +  +GC+        +I+     G ++    LLEE+ D
Sbjct: 280 RMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVD 318



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 2/152 (1%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVR 66
           +P+  +Y  +I   C L ++  A  ++E+MV G   P+  T   +L A C+     + + 
Sbjct: 287 SPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIG 346

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +  M+      PN  T+ S++ +  K  + + A  LL  + +   +P    YN ++AG 
Sbjct: 347 LVEVMV-EKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGL 405

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            +   V   +++L++M   N  PD  TF+ +I
Sbjct: 406 CKATKVHEGVLLLEQMLSNNCVPDIVTFNTII 437



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/277 (18%), Positives = 116/277 (41%), Gaps = 10/277 (3%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  ++       KV  A  +VE MV     P+  T +S+LH   ++ + +    +
Sbjct: 218 PDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATAL 277

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +      PN  T+ ++I  + K+   D AY LL+++ +    P    Y  ++  + +
Sbjct: 278 LQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCK 337

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMA 188
               + A+ +++ M +    P+  T++ L+     ++++ +  + L S    I K     
Sbjct: 338 CGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSS---MIQKGCVPN 394

Query: 189 LINAYTTCGEFEKARQV-----VLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYE 241
           +++  T      KA +V     +L+  +      ++ +   ++ A+    R   A  ++ 
Sbjct: 395 VVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFN 454

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            I+E+GC        +L+  L      ++   LL E+
Sbjct: 455 LIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREM 491



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 31/152 (20%), Positives = 64/152 (42%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  +I+  C    +  A +V+E M++    P   T  +++    ++   +   
Sbjct: 532 LAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKAL 591

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            I  ++      P+  TF   I    K      A  LL+ +    L+P    YN ++ G+
Sbjct: 592 EILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGF 651

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
                 + A+ + + M Q   +PD+ T++ L+
Sbjct: 652 CDASRTEDAVDLFEVMRQCGCEPDNATYTTLV 683



 Score = 45.1 bits (105), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 36/194 (18%), Positives = 81/194 (41%), Gaps = 3/194 (1%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M  K   +P   +Y  +I   C   +V  A  +  QM+   L P   T + ++ +  +  
Sbjct: 491 MTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWR 550

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
             +    +  ++  +   P + T+ ++I    K  + D A  +L  L      P    ++
Sbjct: 551 FMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFS 610

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSA 177
             +    ++  ++ A  +L+ M +A + PD+ T++ L+    + S  ED +  +E ++  
Sbjct: 611 IFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQC 670

Query: 178 GGQITKYVFMALIN 191
           G +     +  L+ 
Sbjct: 671 GCEPDNATYTTLVG 684


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/289 (20%), Positives = 127/289 (43%), Gaps = 13/289 (4%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
            I P   +Y  LI+  C + K+  A+D+  +M    ++P   T + ++    +       
Sbjct: 363 RIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEA 422

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           + +  M+   ++KP+  T+ S++     + + + A S+ + +    +      YN ++ G
Sbjct: 423 KNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMING 482

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQIT 182
           + + K V  A+ + KEM    + PD  T+S LI        I   ++  +++   G Q  
Sbjct: 483 FCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPD 542

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIP---VKSRSEVKSALVSALASHGRTSDAIIV 239
              + ++++A   C +    + + L  ++    ++      + LV  L   G+  DA  V
Sbjct: 543 IITYNSILDA--LCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKV 600

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC 288
           +E++   G NL+  A   +I+    +G  +  + LL ++ +     +GC
Sbjct: 601 FEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEE-----NGC 644



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 89/205 (43%), Gaps = 3/205 (1%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M  K  I P   +Y  L+   C + +V+ A  +   M    +  + ++ N +++   +  
Sbjct: 428 MMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIK 487

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
             +   +++  + H  + P+  T+ S+I    K      A  L+D++      P    YN
Sbjct: 488 MVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYN 547

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSA 177
           +I+    +K  V  A+ +L +++   ++PD  T++ L+         ED  K +E L   
Sbjct: 548 SILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVK 607

Query: 178 GGQITKYVFMALINAYTTCGEFEKA 202
           G  +  Y +  +I  +   G F++A
Sbjct: 608 GYNLDVYAYTVMIQGFCDKGLFDEA 632



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 55/274 (20%), Positives = 118/274 (43%), Gaps = 10/274 (3%)

Query: 12  ASYKKLITYSCDLLKVHVALDVVEQMVQGELV-PSTETINSILHACEESYEFNLVRRIYP 70
            SY  LI   C + +   AL+++ +   G+LV P     N+I+    +    N    +Y 
Sbjct: 299 VSYGTLINGLCKVGETKAALELLRRN-DGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYS 357

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
                 + P+  T+ ++IS    +     A  L + +   N++P    ++ ++ G+ +  
Sbjct: 358 EKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDG 417

Query: 131 DVQGALMVLKEMEQANVKPDSQTFS-----YLIHNCSNEEDIIKYYEQLKSAGGQITKYV 185
           +++ A  VL  M + ++KPD  T+S     Y + N  N+ + I      +     +  Y 
Sbjct: 418 NIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYN 477

Query: 186 FMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
            M  IN +      ++A ++  +     +       S+L+  L   GR S A+ + +E+ 
Sbjct: 478 IM--INGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMH 535

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
             G   +     ++++ L  +  +++ I LL ++
Sbjct: 536 YRGQQPDIITYNSILDALCKKHHVDKAITLLTKL 569



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 5/160 (3%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           MH K +I P   +Y  LI   C   ++  AL++V++M      P   T NSIL A  + +
Sbjct: 499 MHHK-QIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKH 557

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL--KEMNLMPTASM 118
             +    +   +    ++P+  T+  ++    +    + A  + +DL  K  NL   A  
Sbjct: 558 HVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYA-- 615

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
           Y  ++ G+  K     AL +L +ME+    PD++T+  +I
Sbjct: 616 YTVMIQGFCDKGLFDEALALLSKMEENGCIPDAKTYEIII 655


>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Brachypodium distachyon]
          Length = 554

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 82/386 (21%), Positives = 149/386 (38%), Gaps = 56/386 (14%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P    + S L +  E+Y F      Y  +    + P +  F  ++   V++ +  SA  +
Sbjct: 155 PVCSGLMSRLPSTPEAYTF------YLQLLDAGMAPETRLFNVLMRDFVRLGELVSARKV 208

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN--- 160
            D+++  ++ PT   +N +++G  R +D+     + KEM    VKPD  T+  LI     
Sbjct: 209 FDEMRR-SVQPTVVTFNTLISGMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCR 267

Query: 161 CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEV 219
               E+ +K + +++  G      VF  LI+A+   G       +  D  +  V      
Sbjct: 268 TGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVA 327

Query: 220 KSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279
            +ALV+ L        A  + EE+K AG  L+P  V                        
Sbjct: 328 YNALVNGLCRARNLKAAESIVEEMKNAG--LKPDKVTYTT-------------------- 365

Query: 280 DPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAM-EYHFSEIFCQIATTDP 338
                +DGCC+               D+   +K K  + E+++ E  ++ +   ++    
Sbjct: 366 ----LIDGCCK-----------DGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGR 410

Query: 339 PDVQIGLDLLQFIKD--ELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNV 396
           P     +D  + +++  E  L P       ++ A     D+K    + KE +N G    V
Sbjct: 411 P-----VDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGV 465

Query: 397 LSYLWMYKAFLASGNRKSASKLLSKM 422
           ++Y  +       G  K+A  LL  M
Sbjct: 466 VTYNVIMNGLCKLGQMKNADMLLHAM 491



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/307 (21%), Positives = 128/307 (41%), Gaps = 55/307 (17%)

Query: 36  QMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIK 95
           Q++   + P T   N ++       E    R+++  +   +++P   TF ++IS   + +
Sbjct: 176 QLLDAGMAPETRLFNVLMRDFVRLGELVSARKVFDEM-RRSVQPTVVTFNTLISGMCRAR 234

Query: 96  DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFS 155
           D D+   L  ++ ++ + P    Y A++ G+ R   ++ A+ +  EM    V P++  F+
Sbjct: 235 DLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFT 294

Query: 156 YLIHNCSNE-------------------EDIIKY-------------------YEQLKSA 177
            LI     E                    D++ Y                    E++K+A
Sbjct: 295 TLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNA 354

Query: 178 GGQITKYVFMALINAYTTCGEFEKA---RQVVLDAEIPVKSRSEVK-SALVSALASHGRT 233
           G +  K  +  LI+     G+ + A   +Q + + E+   S  EV  +AL+S L+  GR 
Sbjct: 355 GLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEV---SLDEVTYTALISGLSKAGRP 411

Query: 234 SDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDP---------DYW 284
            DA  V  E+ EA    +      +I+    +G++    +LL+E+ +          +  
Sbjct: 412 VDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVI 471

Query: 285 MDGCCRL 291
           M+G C+L
Sbjct: 472 MNGLCKL 478



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 88/187 (47%), Gaps = 4/187 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  LI   C   K+ +A+D+ ++M + E+     T  +++    ++       
Sbjct: 356 LKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDAE 415

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R+   +    L+P++ T+  +I    +  D  + + LL +++     P    YN IM G 
Sbjct: 416 RVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGL 475

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEEDIIKYYEQLKSAGGQITKY- 184
            +   ++ A M+L  M    V PD  T++ L+   C + +  +   E+L+S+ G +  + 
Sbjct: 476 CKLGQMKNADMLLHAMLNIGVSPDDITYNILLDGQCKHGK--VANSEELESSKGMVPDFA 533

Query: 185 VFMALIN 191
           V+ +LI+
Sbjct: 534 VYTSLIS 540


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/268 (21%), Positives = 111/268 (41%), Gaps = 33/268 (12%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y  LI   C L  +  A+   ++M+   L P+  +  S++       + +   R+Y  + 
Sbjct: 439 YNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMT 498

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
              + PN+ TF ++IS   +      A+ L D++ E N+MP    YN ++ G+ ++ +  
Sbjct: 499 GKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTV 558

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAY 193
            A  +L +M Q  + PD+                                Y +  LI++ 
Sbjct: 559 KAFELLNQMVQKGLVPDT--------------------------------YTYRPLISSL 586

Query: 194 TTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP 252
            + G   +A++ + D      K      SAL+      GR  DA+ V  E+ + G +++ 
Sbjct: 587 CSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDL 646

Query: 253 RAVIALIEHLNSEGELNRLIQLLEEVHD 280
                LI+    E + + +  LL+ +HD
Sbjct: 647 VCYAVLIDGTIKEQDTSAVFGLLKNMHD 674



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 91/426 (21%), Positives = 166/426 (38%), Gaps = 70/426 (16%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  SY  LI+  C+  K+H A  +  +M    + P+T T  +++ A   +       
Sbjct: 467 LKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAF 526

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM-------- 118
           R++  +   N+ PN  T+  MI  + K  +   A+ LL+ + +  L+P            
Sbjct: 527 RLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSL 586

Query: 119 ---------------------------YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151
                                      Y+A++ GY ++  ++ AL V +EM +  V  D 
Sbjct: 587 CSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDL 646

Query: 152 QTFSYLIHNCSNEEDIIKYYEQLKSAGGQIT---KYVFMALINAYTTCGEFEKARQVVLD 208
             ++ LI     E+D    +  LK+   Q     K ++ ++I+ Y+  G  +KA   + D
Sbjct: 647 VCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFG-IWD 705

Query: 209 AEIPVKSRSEV--KSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
             I       +   + L++ L   G    A ++++E+  +            ++HL  EG
Sbjct: 706 IMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREG 765

Query: 267 ELNRLIQ--------LLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDK--FK 316
            + + +Q        LL      +  + G C+L        ++  AT LL ++ D   F 
Sbjct: 766 SMEKAVQLHNDMLKGLLANTVSYNILVRGFCKL-------GRVEEATKLLDEMIDNAIFP 818

Query: 317 DDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDEL--GLPPSRKCLDFLLGACVNA 374
           D        +S I  Q       D  I     +F    L  GL P     +FL+  C  A
Sbjct: 819 DC-----ITYSTIIYQCCRRGNLDGAI-----EFWDTMLNKGLKPDTLAYNFLIYGCCIA 868

Query: 375 RDLKRA 380
            +L +A
Sbjct: 869 GELGKA 874



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 88/466 (18%), Positives = 171/466 (36%), Gaps = 55/466 (11%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L   P+ A+   L+       KV  A D+V ++ +   +PS    N+++++  +  +F+
Sbjct: 324 ELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFD 383

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               ++  +    L  N  T+  +I    +    D+A   L  +    +  T   YN+++
Sbjct: 384 EAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLI 443

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQ 180
            G+ +  ++  A+    EM    +KP   +++ LI    N+    +  + Y ++   G  
Sbjct: 444 NGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIA 503

Query: 181 ITKYVFMALINAY---------------------------------------TTCGEFEK 201
              Y F  LI+A                                         T   FE 
Sbjct: 504 PNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFEL 563

Query: 202 ARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEH 261
             Q+V    +P    +     L+S+L S GR  +A    +++      L      AL+  
Sbjct: 564 LNQMVQKGLVP---DTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHG 620

Query: 262 LNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL--HCVRFKQLSSATDLLKQLKD-KFKDD 318
              EG L   + +  E+      MD  C  +L    ++ +  S+   LLK + D + + D
Sbjct: 621 YCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPD 680

Query: 319 EMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLK 378
           ++               +    V+    +   + DE G  P+      L+     A  + 
Sbjct: 681 KVIYTSMID------GYSKAGSVKKAFGIWDIMIDE-GCTPNIVTYTTLINELCKAGLMD 733

Query: 379 RAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424
           +A L+WKE   +    N ++Y          G+ + A +L + M K
Sbjct: 734 KAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLK 779



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 76/408 (18%), Positives = 164/408 (40%), Gaps = 38/408 (9%)

Query: 33  VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92
           +   M Q EL+P   T+  +L+   +    ++V  ++  I    ++P+   + ++I    
Sbjct: 180 IFRLMRQCELMPQVRTLGEVLNGLAKIRRVDMVLVLFGEILSMGIRPDIYIYVAVIRSFC 239

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
           ++K+F  A  ++  ++  +L     +YN ++ G  + K V  A+ +   + Q  +     
Sbjct: 240 ELKNFAKAKEMIQRMESSDL--NVVVYNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEV 297

Query: 153 TFSYLIHN-CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEI 211
           T+  L+   C  +E     +E       ++ +  F+    A ++  E  + +  V+DA  
Sbjct: 298 TYCTLVLGLCKVQE-----FEVGAGVMDEMIELGFVPTEAALSSLVEGLRRKGKVVDAFD 352

Query: 212 PVKSRSEVKS--------ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
            V    +V +        AL+++L   G+  +A ++++E+ E G          LI+   
Sbjct: 353 LVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFC 412

Query: 264 SEGELNRLIQLLEE---------VHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDK 314
             G+L+  I  L +         V+  +  ++G C+L         LS+A     ++ DK
Sbjct: 413 RRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKL-------GNLSAAVSFFDEMIDK 465

Query: 315 FKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNA 374
                +         +C     +   +     L   +  + G+ P+      L+ A   A
Sbjct: 466 GLKPTVVSYTSLISGYC-----NKGKLHEAFRLYHEMTGK-GIAPNTYTFTTLISALFRA 519

Query: 375 RDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
             +  A  ++ E     +  N ++Y  M +     GN   A +LL++M
Sbjct: 520 NRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQM 567


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 103/221 (46%), Gaps = 10/221 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
            L V  +MV     P+  T+ S+L AC      NL + I+       + P+     ++I+
Sbjct: 213 GLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIA 272

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           L  K  + ++A SL D +   NL+     +NA++A Y +      A+ + + M+   V  
Sbjct: 273 LYGKCGNVETARSLFDGMVVQNLVS----WNAMIAAYEQNNAGANAVKLFRRMQAEKVDF 328

Query: 150 DSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D  T   +I  C++   +      +E +K  G +I   +  ALI+ Y  CG  + AR+V 
Sbjct: 329 DYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVF 388

Query: 207 LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
               +P +S     S ++ A ASHG   DA+ ++  +K+ G
Sbjct: 389 --ERLPCRSVVSWTS-MIGACASHGHGEDALKLFSRMKDEG 426



 Score = 39.3 bits (90), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 107/246 (43%), Gaps = 32/246 (13%)

Query: 48  TINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL 107
           T+ S++ AC      N  R ++ ++    L+ N     ++I +  K  + D A  + + L
Sbjct: 332 TMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERL 391

Query: 108 KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE--- 164
              +++   SM  A  A +   +D   AL +   M+   VKP+S TF+ +   C +    
Sbjct: 392 PCRSVVSWTSMIGAC-ASHGHGED---ALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLV 447

Query: 165 EDIIKYYEQLKSAGGQITKYVFM-------ALINAYTTCGEFEKARQVVLDAEIPVKSRS 217
           E+  K++E +      +  Y  M        +++     G   +A + +   ++PV+   
Sbjct: 448 EEGRKHFESM------MRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFI--DKMPVEPDV 499

Query: 218 EVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEG----ELNRL 271
            V  AL+ +   H     A +V E++      L+P+ V    L+ ++ +E     +  RL
Sbjct: 500 SVWGALLGSCRIHSNLELAELVAEKLFL----LDPQTVTFYVLMSNIYAEAGRWEDAARL 555

Query: 272 IQLLEE 277
            +L+EE
Sbjct: 556 RKLMEE 561


>gi|357460285|ref|XP_003600424.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489472|gb|AES70675.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 393

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/264 (21%), Positives = 114/264 (43%), Gaps = 8/264 (3%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+ ++ QM    + P+  T  +++    +  E    R +  ++    ++PN  T+ S++ 
Sbjct: 107 AVGLLNQMTSKTVTPNIRTFTTLVDGLCKDGEVKKARNVLAIMIKQRVEPNIVTYNSLMD 166

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
               +K+ + A  L + +    + P    Y  ++ G  + K V  A  + KEM   N+ P
Sbjct: 167 GYFLVKEVNKAKQLFNTISLRGMTPNVRSYKVMINGLCKNKMVDEAANLFKEMHSKNMVP 226

Query: 150 DSQTFSYLIHN-CSNEE--DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D+  ++ LI   C +    D+  +  ++   G       + +L++    C   +  + + 
Sbjct: 227 DTVAYNSLIDGLCKSRRIYDVWDFIGEMHDRGQPANIITYNSLLDG--LCKNHQVDKAIT 284

Query: 207 LDAEIP---VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
           L  +I    ++      + LV  L  +GR  DA  VY+++   G  L+ R    +I  L 
Sbjct: 285 LLTKIKNQGIRPNIYTYTILVDGLCKNGRLRDAQEVYQDLLNKGYQLDARIYTVMINGLC 344

Query: 264 SEGELNRLIQLLEEVHDPDYWMDG 287
            EG L+  + LL ++ D     DG
Sbjct: 345 KEGFLDEALSLLSKMEDNKCTPDG 368



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 87/387 (22%), Positives = 149/387 (38%), Gaps = 57/387 (14%)

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163
           L+ ++ + + P   MYN I+    + K V     +  EM    + PD  T++ LI++  N
Sbjct: 27  LNHIERLLVKPDVVMYNTIIDILCKDKLVSDGCDLYSEMIDKKIYPDVVTYNTLIYSLLN 86

Query: 164 -------EEDIIKYYEQLKSAGG---QITKYVFMALINAYTTC-------GEFEKARQVV 206
                  +E       Q+K A G   Q+T       I  +TT        GE +KAR V+
Sbjct: 87  FVYIKIRKEYGFSILGQMKEAVGLLNQMTSKTVTPNIRTFTTLVDGLCKDGEVKKARNVL 146

Query: 207 LDAEIPVKSRSE----VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
               I +K R E      ++L+         + A  ++  I   G     R+   +I  L
Sbjct: 147 ---AIMIKQRVEPNIVTYNSLMDGYFLVKEVNKAKQLFNTISLRGMTPNVRSYKVMINGL 203

Query: 263 NSEGELNRLIQLLEEVHD----PDY-----WMDGCCRLILHCVRFKQLSSATDLLKQLKD 313
                ++    L +E+H     PD       +DG C       + +++    D + ++ D
Sbjct: 204 CKNKMVDEAANLFKEMHSKNMVPDTVAYNSLIDGLC-------KSRRIYDVWDFIGEMHD 256

Query: 314 KFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLL-GACV 372
           + +   +       +  C+    D       + LL  IK++ G+ P+      L+ G C 
Sbjct: 257 RGQPANIITYNSLLDGLCKNHQVDK-----AITLLTKIKNQ-GIRPNIYTYTILVDGLCK 310

Query: 373 NARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFV 432
           N R L+ A  ++++  N G   +   Y  M       G    A  LLSKM  +    +  
Sbjct: 311 NGR-LRDAQEVYQDLLNKGYQLDARIYTVMINGLCKEGFLDEALSLLSKMEDN----KCT 365

Query: 433 IQACKQTYTIPSLQKERGFEKDRDTLL 459
                   TI +L     FE DR+ +L
Sbjct: 366 PDGVTYEITIRAL-----FESDRNEIL 387



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 67/159 (42%), Gaps = 1/159 (0%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           MH+K  + P + +Y  LI   C   +++   D + +M       +  T NS+L    +++
Sbjct: 219 MHSK-NMVPDTVAYNSLIDGLCKSRRIYDVWDFIGEMHDRGQPANIITYNSLLDGLCKNH 277

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           + +    +   I +  ++PN  T+  ++    K      A  +  DL        A +Y 
Sbjct: 278 QVDKAITLLTKIKNQGIRPNIYTYTILVDGLCKNGRLRDAQEVYQDLLNKGYQLDARIYT 337

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159
            ++ G  ++  +  AL +L +ME     PD  T+   I 
Sbjct: 338 VMINGLCKEGFLDEALSLLSKMEDNKCTPDGVTYEITIR 376


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 124/264 (46%), Gaps = 13/264 (4%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +I+   +      AL++ ++M++  + P   T+ +++ AC +S    L R+++  I
Sbjct: 174 SWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWI 233

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
             H    N +   ++I L  K  + ++A  LL+ L   +++     +N ++ GY      
Sbjct: 234 NDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSNKDVIS----WNTLIGGYTHMNLY 289

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI-----IKYYEQLKSAGGQITKYVFM 187
           + AL++ +EM ++   P+  T   ++  C++   I     I  Y   K  G  +T    +
Sbjct: 290 KEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSL 349

Query: 188 --ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
             +LI+ Y  CG+ + A QV  D+    +S S   +A++   A HGR + A  ++  +++
Sbjct: 350 RTSLIDMYAKCGDIDAAPQVS-DSSAFNRSLS-TWNAMIFGFAMHGRANAAFDIFSRMRK 407

Query: 246 AGCNLEPRAVIALIEHLNSEGELN 269
            G   +    + L+   +  G L+
Sbjct: 408 NGIEPDDITFVGLLSACSHSGMLD 431



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 83/203 (40%), Gaps = 30/203 (14%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL +   M+   L+P+  T   +L +C +S  F   ++I+  +       +     S+IS
Sbjct: 59  ALKLYVVMISLGLLPNFFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLIS 118

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASM---------------------------YNAI 122
           +  +    + A  + D     +++   ++                           +NA+
Sbjct: 119 MYAQNGRLEDAQKVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAM 178

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGG 179
           ++GY    + + AL + KEM + NVKPD  T + ++  C+    I    + +  +   G 
Sbjct: 179 ISGYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGF 238

Query: 180 QITKYVFMALINAYTTCGEFEKA 202
                +  ALI+ Y+ CGE E A
Sbjct: 239 GSNLKIVNALIDLYSKCGEVETA 261



 Score = 45.4 bits (106), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 94/213 (44%), Gaps = 19/213 (8%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLK----PNSETFR 85
           AL + ++M++    P+  T+ SIL AC      ++ R I+  I    LK     N+ + R
Sbjct: 292 ALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYI-DKKLKGVVVTNASSLR 350

Query: 86  -SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQ 144
            S+I +  K  D D+A  + D         + S +NA++ G+        A  +   M +
Sbjct: 351 TSLIDMYAKCGDIDAAPQVSDSSA---FNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRK 407

Query: 145 ANVKPDSQTFSYLIHNCSNE------EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGE 198
             ++PD  TF  L+  CS+        +I +   Q  +   ++  Y  M  I+     G 
Sbjct: 408 NGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCM--IDLLGHSGL 465

Query: 199 FEKARQVVLDAEIPVKSRSEVKSALVSALASHG 231
           F++A +++    +P++    +  +L+ A   HG
Sbjct: 466 FKEAEEMI--NTMPMEPDGVIWCSLLKACKIHG 496


>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
          Length = 524

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 146/322 (45%), Gaps = 45/322 (13%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M  K E+ PS+  Y  LI   CD+ K+ VAL   E MVQ  +  +  T N ++HA     
Sbjct: 209 MLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHA----- 263

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
                                      + ++ +  D   AY++L+++++    P    YN
Sbjct: 264 ---------------------------LFMDARASD---AYAVLEEMQKNGFSPDVFTYN 293

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSA 177
            ++ GY ++ + + AL V +EM Q  V+  + T++ LI+  S +   ++  + +      
Sbjct: 294 ILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKK 353

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLDAE---IPVKSRSEVKSALVSALASHGRTS 234
           G +    ++ ALIN++ T G+ E+A +++ + E   IP    +   + L+      GR  
Sbjct: 354 GIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMT--YNTLMRGFCLLGRLD 411

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY--WMDGCCRLI 292
           +A  + +E+ + G   +  +   LI   + +G++   +++ +E+ D  +   +     LI
Sbjct: 412 EARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALI 471

Query: 293 LHCVRFKQLSSATDLLKQLKDK 314
               + +Q   A +L+K++  K
Sbjct: 472 QGLCKIRQGDDAENLMKEMVAK 493



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 130/317 (41%), Gaps = 45/317 (14%)

Query: 114 PTASMYNAIMAGYFRKKDVQGALMVLKEM-EQANVKPDSQTFSYLIHN---CSNEEDIIK 169
           P A  YN ++AG+  +  VQ AL V++EM E+  + PD  T++ LI         ED +K
Sbjct: 145 PNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAVK 204

Query: 170 YYEQLKSAGGQITKYV-FMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSAL 227
            ++++ + G      V + ALI  Y   G+ + A Q   D  +  +       + L+ AL
Sbjct: 205 VFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHAL 264

Query: 228 ASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDG 287
               R SDA  V EE+++ G + +      LI     EG   + +++ EE+         
Sbjct: 265 FMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQ------- 317

Query: 288 CCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDL 347
                   VR   ++  +                + Y FS    Q+  T         D 
Sbjct: 318 ------KGVRATAVTYTS----------------LIYVFSRK-GQVQET---------DR 345

Query: 348 LQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFL 407
           L  +  + G+ P     + L+ +     D++RA+ I  E E   +P + ++Y  + + F 
Sbjct: 346 LFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFC 405

Query: 408 ASGNRKSASKLLSKMPK 424
             G    A  L+ +M K
Sbjct: 406 LLGRLDEARTLIDEMTK 422



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 70/163 (42%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  I P    Y  LI   C    +  A +++ +M +  + P   T N+++         +
Sbjct: 352 KKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLD 411

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             R +   +    ++P+  ++ ++IS      D   A  + D++ +    PT   YNA++
Sbjct: 412 EARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALI 471

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED 166
            G  + +    A  ++KEM    + PD  T+  LI   + E++
Sbjct: 472 QGLCKIRQGDDAENLMKEMVAKGITPDDSTYISLIEGLTTEDE 514


>gi|297724885|ref|NP_001174806.1| Os06g0499301 [Oryza sativa Japonica Group]
 gi|52076487|dbj|BAD45366.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|125597333|gb|EAZ37113.1| hypothetical protein OsJ_21452 [Oryza sativa Japonica Group]
 gi|255677074|dbj|BAH93534.1| Os06g0499301 [Oryza sativa Japonica Group]
          Length = 642

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/287 (20%), Positives = 133/287 (46%), Gaps = 17/287 (5%)

Query: 6   EITPSSASYKKLITYSCDLLK-------VHVALDVVEQMVQG-ELVPSTETINSILHACE 57
            + P+  S+  L+   C  L        + VAL ++ +++ G +L P   T ++++ A  
Sbjct: 161 RLAPTLLSFNLLLKCVCSSLVPRDPGRYLDVALRILHEIIPGWDLAPDKFTYSTVVSALA 220

Query: 58  ESYEFN-LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTA 116
           ++   +  V  ++ M+    +   +E F  ++   ++  D   A  L   ++    +PT 
Sbjct: 221 DAGRVDDAVALVHEMVADGVVA--AEAFNPVLRAMLRAGDVKGAAKLFGFMQLKGCVPTT 278

Query: 117 SMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQ 173
           + YN ++ G         A+ V++ ME+  V P   T+  ++     C   +D  K  E+
Sbjct: 279 ATYNVLVHGLLVCGRAGAAMGVMRRMEREGVVPGVMTYGAVVDGLVRCGRVKDAWKVAEE 338

Query: 174 LKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEI--PVKSRSEVKSALVSALASHG 231
           ++  G    ++V+  +I  +   GE + A + V +A +  PV+    + SA++  LA+ G
Sbjct: 339 MERNGLAWNEFVYSTVITGFCKSGEIDCALK-VWEAMVASPVRPNVVLYSAMIGGLANFG 397

Query: 232 RTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           + ++A +++ E+  + C        ++I+     G+ +R + + EE+
Sbjct: 398 KMTEAELLFREMIHSKCAPNIITYGSIIQGYFKIGDTSRALSVWEEM 444



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 134/300 (44%), Gaps = 39/300 (13%)

Query: 43  VPSTETINSILHAC----EESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFD 98
           VP+T T N ++H             ++RR+        + P   T+ +++   V+     
Sbjct: 275 VPTTATYNVLVHGLLVCGRAGAAMGVMRRME----REGVVPGVMTYGAVVDGLVRCGRVK 330

Query: 99  SAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            A+ + ++++   L     +Y+ ++ G+ +  ++  AL V + M  + V+P+   +S +I
Sbjct: 331 DAWKVAEEMERNGLAWNEFVYSTVITGFCKSGEIDCALKVWEAMVASPVRPNVVLYSAMI 390

Query: 159 HNCSN------EEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV---VLDA 209
              +N       E + +     K A   IT   + ++I  Y   G+  +A  V   ++ A
Sbjct: 391 GGLANFGKMTEAELLFREMIHSKCAPNIIT---YGSIIQGYFKIGDTSRALSVWEEMIGA 447

Query: 210 EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN 269
                + S   S L++ L + GR  DA++V++ + + GC  +  A  ++I+ L   G ++
Sbjct: 448 GCVPNAVS--YSILINGLCNVGRLKDAMMVWKHMLDRGCAPDTIAYTSMIKGLCVSGMVD 505

Query: 270 RLIQLLEEV-----HDPD-----YWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDE 319
             ++L  ++      DPD       +DG   L+L     K L  A DLL ++ D+  D +
Sbjct: 506 GGLRLFYDMLASGHADPDVISYNVLLDG---LLLA----KDLPRAMDLLNRMLDQGCDPD 558



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/205 (19%), Positives = 83/205 (40%), Gaps = 3/205 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  ++       +V  A  V E+M +  L  +    ++++    +S E +   
Sbjct: 309 VVPGVMTYGAVVDGLVRCGRVKDAWKVAEEMERNGLAWNEFVYSTVITGFCKSGEIDCAL 368

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++  +    ++PN   + +MI           A  L  ++      P    Y +I+ GY
Sbjct: 369 KVWEAMVASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMIHSKCAPNIITYGSIIQGY 428

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITK 183
           F+  D   AL V +EM  A   P++ ++S LI+   N    +D +  ++ +   G     
Sbjct: 429 FKIGDTSRALSVWEEMIGAGCVPNAVSYSILINGLCNVGRLKDAMMVWKHMLDRGCAPDT 488

Query: 184 YVFMALINAYTTCGEFEKARQVVLD 208
             + ++I      G  +   ++  D
Sbjct: 489 IAYTSMIKGLCVSGMVDGGLRLFYD 513



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 73/168 (43%), Gaps = 4/168 (2%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y  +IT  C   ++  AL V E MV   + P+    ++++       +      ++  + 
Sbjct: 351 YSTVITGFCKSGEIDCALKVWEAMVASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMI 410

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
           H    PN  T+ S+I    KI D   A S+ +++     +P A  Y+ ++ G      ++
Sbjct: 411 HSKCAPNIITYGSIIQGYFKIGDTSRALSVWEEMIGAGCVPNAVSYSILINGLCNVGRLK 470

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHN-CSN---EEDIIKYYEQLKSA 177
            A+MV K M      PD+  ++ +I   C +   +  +  +Y+ L S 
Sbjct: 471 DAMMVWKHMLDRGCAPDTIAYTSMIKGLCVSGMVDGGLRLFYDMLASG 518


>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
 gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
          Length = 695

 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 125/277 (45%), Gaps = 21/277 (7%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           +SAS+  +I       +   AL + +QM++    P+  TI ++   C ++ + +  RR  
Sbjct: 270 TSASWNSMIACYAHGGEFREALTLFDQMLREGASPNAITITTVFSICAKTGDLDTGRRAR 329

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
             I   +L+ N     +++ + VK +  D A    D +   +++     ++ ++AGY + 
Sbjct: 330 AWIREEDLQ-NVIVHTALMEMYVKCRAIDEARHEFDRMPRRDVV----AWSTMIAGYSQN 384

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN------EEDIIKYYEQLKSAGGQITK 183
                +L + + M+  N KP+  T   ++  C+        E I  Y E   S    +T 
Sbjct: 385 GRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGNYIE---SQTLPLTS 441

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
           Y+  ALI+ YT CG   +AR V    E  V       ++++  LA +G   DAI +Y   
Sbjct: 442 YLGSALIDMYTKCGHVARARSVFNRMEQKVVV---TWNSMIRGLALNGFAEDAIALYR-- 496

Query: 244 KEAGCNLEPRAV--IALIEHLNSEGELNRLIQLLEEV 278
           K  G  ++P  V  +AL+      G +++ I   EE+
Sbjct: 497 KMVGDGIQPNEVTFVALLTACTHAGLVDKGIAFFEEM 533


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 95/488 (19%), Positives = 179/488 (36%), Gaps = 77/488 (15%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
            P + +Y  +I       K   A  ++E+      +PS    N IL    +  + +   +
Sbjct: 305 VPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALK 364

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           ++  +   +  PN  T+  +I +  +    D+A+ L D +++  L P     N ++    
Sbjct: 365 VFEEM-KKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLC 423

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKY 184
           + + +  A  + +EM+     PD  TF  LI         +D  K YE++  +  +    
Sbjct: 424 KSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSI 483

Query: 185 VFMALINAYTTCGEFEKARQVVLD----------------------AEIPVKSRS---EV 219
           V+ +LI  +   G  E   ++  D                      A  P K R+   E+
Sbjct: 484 VYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEI 543

Query: 220 K-----------SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGEL 268
           K           S L+  L   G  ++   ++  +KE GC L+ RA   +I+     G++
Sbjct: 544 KARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKV 603

Query: 269 NRLIQLLEEVH----DPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEY 324
           N+  QLLEE+     +P     G   +I    +  +L  A  L ++ K K  +  + +  
Sbjct: 604 NKAYQLLEEMKTKGFEPTVVTYG--SVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYS 661

Query: 325 HFSEIFCQIATTDPP------------------------------DVQIGLDLLQFIKDE 354
              + F ++   D                                ++   L   Q +K E
Sbjct: 662 SLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMK-E 720

Query: 355 LGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKS 414
           L   P++     L+      R   +A + W+E +  G+  + +SY  M      +GN   
Sbjct: 721 LKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAE 780

Query: 415 ASKLLSKM 422
           A  L  + 
Sbjct: 781 AGALFDRF 788



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 119/267 (44%), Gaps = 23/267 (8%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           K+    DVV+ M + +  P+     +++ A       +++  ++  +     +P    F 
Sbjct: 148 KLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFT 207

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           ++I    K    DSA SLLD++K  +L     +YN  +  + +   V  A     E+E  
Sbjct: 208 TLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEAN 267

Query: 146 NVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
            +KPD  T++ +I      +  ++ ++ +E L+        Y +  +I  Y + G+F++A
Sbjct: 268 GLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEA 327

Query: 203 RQVVLDAEIPVKSRSEVKSALVSALASH---------GRTSDAIIVYEEI-KEAGCNLEP 252
             ++         R   K ++ S +A +         G+  +A+ V+EE+ K+A  NL  
Sbjct: 328 YSLL--------ERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNLST 379

Query: 253 RAVIALIEHLNSEGELNRLIQLLEEVH 279
             +  LI+ L   G+L+   +L + + 
Sbjct: 380 YNI--LIDMLCRAGKLDTAFELRDSMQ 404



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 80/173 (46%), Gaps = 13/173 (7%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y  LI     + ++  A  ++E+++Q  L P+  T NS+L A  ++ E N       ++C
Sbjct: 660 YSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEIN-----EALVC 714

Query: 74  HHNLK-----PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
             ++K     PN  T+  +I+   K++ F+ A+    ++++  + P+   Y  +++G  +
Sbjct: 715 FQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAK 774

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE---DIIKYYEQLKSAG 178
             ++  A  +    +     PDS  ++ +I   SN     D    +E+ +  G
Sbjct: 775 AGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRG 827



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 29/152 (19%), Positives = 68/152 (44%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           +TP+  ++  L+       +++ AL   + M + +  P+  T   +++   +  +FN   
Sbjct: 688 LTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAF 747

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
             +  +    +KP++ ++ +MIS   K  +   A +L D  K    +P ++ YNA++ G 
Sbjct: 748 VFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGL 807

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
                   A  + +E  +  +   ++T   L+
Sbjct: 808 SNGNRAMDAFSLFEETRRRGLPIHNKTCVVLL 839


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/345 (20%), Positives = 139/345 (40%), Gaps = 40/345 (11%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACE------ESYE 61
           TP+ A+Y  L+   C + ++  A+D++ ++V     P   T  S++          E+Y+
Sbjct: 66  TPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYK 125

Query: 62  F-----------------NLVR------------RIYPMICHHNLKPNSETFRSMISLNV 92
                              L+R             +Y  +      P+  T  +MI    
Sbjct: 126 LFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLC 185

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
           K     +A  +   ++   L P   +Y+A++ G  + + +  AL +L +M++A   PD+ 
Sbjct: 186 KAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTI 245

Query: 153 TFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA 209
           T++ LI       D+     +++++  AG +   Y +  LI+ +   G  + A  V  D 
Sbjct: 246 TYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDM 305

Query: 210 EIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGEL 268
                S + V    L+S L    + + A + Y+ +KE GC  +     +L++ L   G+L
Sbjct: 306 SSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKL 365

Query: 269 NRLIQLLEEVHDPDYWMDGC-CRLILHCVRFKQLSSATDLLKQLK 312
                L +E+            RLI H  +  ++  A  L   ++
Sbjct: 366 EGGCMLFDEMERSGVANSQTRTRLIFHLCKANRVDEAVSLFNAIR 410



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/306 (20%), Positives = 117/306 (38%), Gaps = 39/306 (12%)

Query: 11  SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYP 70
           +  Y  LI       K+  A  V + M     VP   T+++++    ++       RI+ 
Sbjct: 139 TVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFK 198

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
            +    L PN   + ++I    K +  D A  +L  +K+    P    YN ++ G  +  
Sbjct: 199 SMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSG 258

Query: 131 DVQGALMVLKEMEQANVKPDSQTFSYLIHN----------CSNEEDIIK----------- 169
           DV  A     EM +A  KPD  T++ LI            C   +D+             
Sbjct: 259 DVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYG 318

Query: 170 -----------------YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIP 212
                            YY+ +K  G     +V+ +L++     G+ E    +  + E  
Sbjct: 319 TLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERS 378

Query: 213 VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLI 272
             + S+ ++ L+  L    R  +A+ ++  I++ G    P A  ++I  L   G++N   
Sbjct: 379 GVANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGMP-HPYAYNSIISALIKSGKVNEGQ 437

Query: 273 QLLEEV 278
            + +E+
Sbjct: 438 AVYQEM 443



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 73/380 (19%), Positives = 149/380 (39%), Gaps = 45/380 (11%)

Query: 83  TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM 142
           T+ +++    K K    A +L++ +      PT + YNA++ G  +   ++ A+ +L+++
Sbjct: 36  TYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKI 95

Query: 143 EQANVKPDSQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEF 199
                 PD  T++ LI     ++   +  K ++++ S G  +    + ALI      G+ 
Sbjct: 96  VDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKI 155

Query: 200 EKARQV--VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI- 256
            +A  V   + ++  V     + S ++  L   GR   A+ +++ ++  G  L P  V+ 
Sbjct: 156 PQASSVYKTMTSQGCVPDVVTL-STMIDGLCKAGRIGAAVRIFKSMEARG--LAPNEVVY 212

Query: 257 -ALIEHLNSEGELNRLIQLLEEVH----DPD-----YWMDGCCRLILHCVRFKQLSSATD 306
            ALI  L    +++  +++L ++      PD       +DG C       +   +++A  
Sbjct: 213 SALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLC-------KSGDVAAARA 265

Query: 307 LLKQ-LKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELG---LPPSRK 362
              + L+   K D        S  FC+   TD             + D++      P+  
Sbjct: 266 FFDEMLEAGCKPDVYTYNILISG-FCKAGNTDAA---------CGVFDDMSSSRCSPNVV 315

Query: 363 CLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
               L+      R L +A L ++  +  G P +   Y  +      SG  +    L  +M
Sbjct: 316 TYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEM 375

Query: 423 PKDD-----PHVRFVIQACK 437
            +          R +   CK
Sbjct: 376 ERSGVANSQTRTRLIFHLCK 395


>gi|297832060|ref|XP_002883912.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329752|gb|EFH60171.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 89/425 (20%), Positives = 162/425 (38%), Gaps = 26/425 (6%)

Query: 2   HAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYE 61
           H +L+ T S+  +  ++ + C L  V  A++    M +    P TET N IL        
Sbjct: 148 HDRLQ-TKSTILFDFMVRFYCQLRMVDEAIECFYLMKEKGFDPKTETCNHILSLLSRLNR 206

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
                  Y  +    +K N  TF  MI++  K      A   L  ++   + PT   YN 
Sbjct: 207 IENAWVFYADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMESFGIKPTIVTYNT 266

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQI 181
           ++ GY  +  ++GA M++ EM+    +PD QT++ ++    NE    +   ++K  G   
Sbjct: 267 LVQGYSLRGRIEGARMIISEMKSKGFQPDLQTYNPILSWMCNEGRASEVLREMKGIGLVP 326

Query: 182 TKYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAI 237
               +  LI   +  G+ E A     ++V    +P        + L+  L    +   A 
Sbjct: 327 DSVSYNILIRGCSNNGDLETAFAYRDEMVKQGMVPT---FYTYNTLIHGLFMENKIEAAE 383

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC-------CR 290
           I+  EI+E G  L+      +I      G+  +   L +E+       DG          
Sbjct: 384 ILIREIREKGIVLDSVTYNIVINGYCQHGDAKKAFALHDEM-----MTDGIKPTQFTYTS 438

Query: 291 LILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQF 350
           LI    R  +   A +L +++  K    ++ M     +  C     D         LL+ 
Sbjct: 439 LIYVLCRRNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCATGNMDR-----AFSLLKE 493

Query: 351 IKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASG 410
           + D + + P     + L+         + A  +  E +  G+  + +SY  +   +   G
Sbjct: 494 M-DRMNIDPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKG 552

Query: 411 NRKSA 415
           + K A
Sbjct: 553 DTKHA 557



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/158 (20%), Positives = 71/158 (44%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P       L+   C    +  A  ++++M +  + P   T N ++       +F   R +
Sbjct: 466 PDLVMMNTLMDGHCATGNMDRAFSLLKEMDRMNIDPDDVTYNCLMRGLCGEGKFEEAREL 525

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    +KP+  ++ ++IS   K  D   A+ + D++  +   PT   YNA++ G  +
Sbjct: 526 MGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFIVRDEMLSLGFNPTLLTYNALLKGLSK 585

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED 166
            +D + A  +L+EM+   + P+  +F  +I   S  ++
Sbjct: 586 NQDGELAEELLREMKSEGIVPNDSSFCSVIEAMSKSDN 623


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 125/264 (47%), Gaps = 16/264 (6%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +I+   +      AL++ ++M++  + P   T+ +++ AC +S    L R+++  I
Sbjct: 233 SWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWI 292

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
             H    N +   S++ L  K  + ++A  L + L   +++     +N ++ GY      
Sbjct: 293 DDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVIS----WNTLIGGYTHMNLY 348

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI-----IKYY--EQLKSAGGQITKYV 185
           + AL++ +EM ++  +P+  T   ++  C++   I     I  Y  ++LKSA    +  +
Sbjct: 349 KEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASS--L 406

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
             +LI+ Y  CG+ E A QV     I  KS S   +A++   A HGR   A  ++  +++
Sbjct: 407 RTSLIDMYAKCGDIEAAHQVF--NSILHKSLSSW-NAMIFGFAMHGRADAAFDIFSRMRK 463

Query: 246 AGCNLEPRAVIALIEHLNSEGELN 269
            G   +    + L+   +  G L+
Sbjct: 464 IGIEPDDITFVGLLSACSRSGMLD 487



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 59/275 (21%), Positives = 110/275 (40%), Gaps = 58/275 (21%)

Query: 51  SILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDS---AYSLLDDL 107
           S+LH C+       +R I+  +    L   +     ++ L V    FD    A S+ + +
Sbjct: 38  SLLHNCKT---LQSLRLIHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFETI 94

Query: 108 KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI 167
           +E NL+    ++N +  G+    D   AL +   M    + P+S TF +L+ +C+     
Sbjct: 95  QEPNLL----IWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKS--- 147

Query: 168 IKYYEQLKSAGGQITK-------YVFMALINAYTTCGEFEKARQVV-------------- 206
            K +++ +   G + K       +V  +LI+ Y   G  E AR+V               
Sbjct: 148 -KAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTAL 206

Query: 207 ---------------LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLE 251
                          L  EIPVK      +A++S  A  G   +A+ +++E+ +     +
Sbjct: 207 IKGYASRGYIESAQKLFDEIPVKDVVSW-NAMISGYAETGNYKEALELFKEMMKTNIRPD 265

Query: 252 PRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
              ++ ++      G     I+L  +VH    W+D
Sbjct: 266 ESTMVTVVSACAQSGS----IELGRQVHS---WID 293



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 13/127 (10%)

Query: 85  RSMISLNVKIKDF------DSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMV 138
           R ++S    IK +      +SA  L D++   +++     +NA+++GY    + + AL +
Sbjct: 198 RDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVS----WNAMISGYAETGNYKEALEL 253

Query: 139 LKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTT 195
            KEM + N++PD  T   ++  C+    I    + +  +   G      +  +L++ Y+ 
Sbjct: 254 FKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSK 313

Query: 196 CGEFEKA 202
           CGE E A
Sbjct: 314 CGELETA 320



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 91/189 (48%), Gaps = 12/189 (6%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKP--NSETFR-S 86
           AL + ++M++    P+  T+ SIL AC      ++ R I+  I    LK   N+ + R S
Sbjct: 351 ALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYI-DKRLKSATNASSLRTS 409

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           +I +  K  D ++A+ + + +    L  + S +NA++ G+        A  +   M +  
Sbjct: 410 LIDMYAKCGDIEAAHQVFNSI----LHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIG 465

Query: 147 VKPDSQTFSYLIHNCSNEE--DIIKYYEQLKSAGGQITKYV--FMALINAYTTCGEFEKA 202
           ++PD  TF  L+  CS     D+ ++  +  +   +IT  +  +  +I+     G F++A
Sbjct: 466 IEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEA 525

Query: 203 RQVVLDAEI 211
            +++ + E+
Sbjct: 526 EEMINNMEM 534


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 120/254 (47%), Gaps = 19/254 (7%)

Query: 36  QMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIK 95
           ++++ +L+P   T  S+L AC  +      R+++ +     +  N     ++I++  + +
Sbjct: 121 EILEDDLLPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECE 180

Query: 96  DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFS 155
           D D+A  + D + E    P    YNA++ GY R+     AL + +EM+  N+KP+  T  
Sbjct: 181 DVDAARCVFDRIVE----PCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKPNEITLL 236

Query: 156 YLIHNCS--NEEDIIKYYEQLKSAGGQITKYVFM--ALINAYTTCGEFEKARQVVLDAEI 211
            ++ +C+     D+ K+  +     G   KYV +  ALI+ +  CG  + A  +  +   
Sbjct: 237 SVLSSCALLGSLDLGKWIHEYAKKHG-FCKYVKVNTALIDMFAKCGSLDDAVSIFENMRY 295

Query: 212 PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRL 271
                ++  SA++ A A+HG+  ++++++E ++      +    + L+   +  G     
Sbjct: 296 ---KDTQAWSAMIVAYANHGQAENSMLMFERMRSENVQPDEITFLGLLNACSHTG----- 347

Query: 272 IQLLEEVHDPDYWM 285
             L+EE  +   WM
Sbjct: 348 --LVEEGREYFSWM 359



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/243 (20%), Positives = 105/243 (43%), Gaps = 10/243 (4%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P    Y  +IT      + + AL +  +M    L P+  T+ S+L +C      +L +
Sbjct: 193 VEPCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGK 252

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            I+     H      +   ++I +  K    D A S+ ++++  +       ++A++  Y
Sbjct: 253 WIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKD----TQAWSAMIVAY 308

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITK 183
                 + ++++ + M   NV+PD  TF  L++ CS+    E+  +Y+  +    G +  
Sbjct: 309 ANHGQAENSMLMFERMRSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPS 368

Query: 184 YV-FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
              + ++++     G  E A + +   ++P+     +   L++A +SH     A  V E 
Sbjct: 369 IKHYGSMVDLLGRAGHLEDAYEFI--DKLPISPTPMLWRILLAACSSHNNLELAEKVSER 426

Query: 243 IKE 245
           I E
Sbjct: 427 ILE 429



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 22/184 (11%)

Query: 88  ISLNVKIKDF------DSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKE 141
           +S N K+ +F      +S+ S    L +    P   ++N+I  GY R  +      +  E
Sbjct: 62  VSFNTKLINFCTESPTESSMSYARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVE 121

Query: 142 MEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKS-------AGGQITKYVFMALINAYT 194
           + + ++ PD+ TF  L+  C+    + K  E+ +         G     YV   LIN YT
Sbjct: 122 ILEDDLLPDNYTFPSLLKACA----VAKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYT 177

Query: 195 TCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRA 254
            C + + AR V    +  V+      +A+++  A   R ++A+ ++ E++  G NL+P  
Sbjct: 178 ECEDVDAARCVF---DRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQ--GKNLKPNE 232

Query: 255 VIAL 258
           +  L
Sbjct: 233 ITLL 236


>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 806

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/285 (20%), Positives = 131/285 (45%), Gaps = 8/285 (2%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           EI P   ++  LI+ S    K+  A  + ++M+   + P T T NS+++   +   F+  
Sbjct: 361 EINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDA 420

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           + ++ ++      P+  TF ++I +  + K  D    LL ++    L+   + YN ++ G
Sbjct: 421 KHMFDLMA----SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHG 476

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQIT 182
           +    ++  A  + +EM    V PD+ T + L++  C NE  E+ ++ +E ++ +   + 
Sbjct: 477 FCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLD 536

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYE 241
              +  +I+      + ++A  +     I  V+   +  + ++S        SDA +++ 
Sbjct: 537 TVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFH 596

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
           ++K+ G   +      LI      GE+++ I+L+ E+    +  D
Sbjct: 597 KMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGD 641



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 127/321 (39%), Gaps = 47/321 (14%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           L  +P   ++  +I   C   +V   + ++ ++ +  LV +T T N+++H   E    N 
Sbjct: 426 LMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNA 485

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
            + ++  +  H + P++ T   ++    + +  + A  L + ++   +      YN I+ 
Sbjct: 486 AQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIH 545

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQI 181
           G  +   V  A  +   +    V+PD QT++ +I   C      D    + ++K  G + 
Sbjct: 546 GMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEP 605

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY- 240
               +  LI      GE +K+ +++          SE++S   S  A   + ++ II   
Sbjct: 606 DNSTYNTLIRGCLKAGEIDKSIELI----------SEMRSNGFSGDAFTIKMAEEIICRV 655

Query: 241 --EEIKE----AGCNLE----PRAVIALIEHLNSE---------------------GELN 269
             EEI E       N E    PR V+ L E L +                      G+ N
Sbjct: 656 SDEEIIENYLRPKINGETSSIPRYVVELAEELYTVEPWLLPRQTAPILNPGEWFYFGKRN 715

Query: 270 RLIQLLEEVHDPDYWM--DGC 288
           R    LE VH    W+  DGC
Sbjct: 716 RKYSNLEGVHCEGSWILEDGC 736



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 51/244 (20%), Positives = 104/244 (42%), Gaps = 21/244 (8%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEES------------ 59
           S+  LI   CD  K+  +L    ++ +    P   T N++LH  C E             
Sbjct: 143 SFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYM 202

Query: 60  --YEFNLVRRIYPMICHHNLKPNSETFRSMIS-LNVKIKDFDSAYSLLDDLKEMNLMPTA 116
               F     ++  +    L P   TF ++I+ L ++ +  ++A +L++ +    L    
Sbjct: 203 VETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAA-ALVNKMVGKGLHIDV 261

Query: 117 SMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQ 173
             Y  I+ G  +  D + AL +L +ME+ ++KPD   +S +I       +  D    + +
Sbjct: 262 VTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSE 321

Query: 174 LKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGR 232
           +   G     + +  +I+ + + G +  A++++ D  E  +       +AL+SA    G+
Sbjct: 322 MLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGK 381

Query: 233 TSDA 236
             +A
Sbjct: 382 LFEA 385



 Score = 42.7 bits (99), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 38/198 (19%), Positives = 88/198 (44%), Gaps = 7/198 (3%)

Query: 12  ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSIL-HACEESYEFNLVRRIYP 70
            +Y  ++   C +     AL+++ +M +  + P     ++I+   C++ +  +  + ++ 
Sbjct: 262 VTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSD-AQYLFS 320

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
            +    + PN  T+  MI        +  A  LL D+ E  + P    +NA+++   ++ 
Sbjct: 321 EMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEG 380

Query: 131 DVQGALMVLKEMEQANVKPDSQTFSYLIHN-CS-NEEDIIKYYEQLKSAGGQITKYVFMA 188
            +  A  +  EM    + PD+ T++ +I+  C  N  D  K+   L ++   +T   F  
Sbjct: 381 KLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVT---FNT 437

Query: 189 LINAYTTCGEFEKARQVV 206
           +I+ Y      ++  Q++
Sbjct: 438 IIDVYCRAKRVDEGMQLL 455


>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
          Length = 624

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 88/419 (21%), Positives = 182/419 (43%), Gaps = 52/419 (12%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  LI   CD  +V  A++++ +M +  + P+    +S+L    +S  +  V +++  +
Sbjct: 152 TYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEM 211

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               ++P+   +  +I    K+     A+ ++D +    L P    YN ++    ++  V
Sbjct: 212 SEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSV 271

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINA 192
           + A+ VLK+M +  V PD  T++ LI   S   D+++  E              M L+  
Sbjct: 272 KEAIGVLKKMSEKGVAPDVVTYNTLIKGLS---DVLEMDEA-------------MWLLE- 314

Query: 193 YTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP 252
                E  + + +       VK      ++++  L   GR   A  V   ++E GC +  
Sbjct: 315 -----EMVRGKNI-------VKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNL 362

Query: 253 RAVIALIEHLNSEGELNRLIQLLEEVH----DPDYW-----MDGCCRLILHCVRFKQLSS 303
                LI  L    ++ + ++L++E+     +PD +     + G C++        Q+  
Sbjct: 363 VTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMW-------QVDR 415

Query: 304 ATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKC 363
           A DLL  ++D+  + E+   +H+  +   +A  +   ++   +L   + +   L      
Sbjct: 416 AEDLLSTMRDRGIEPEL---FHYIPLL--VAMCEQGMMERARNLFNEMDNNFPLDVVAYS 470

Query: 364 LDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
              + GAC  A DLK A  + K   + GL  + ++Y  +   F  SG+ ++A+ +L +M
Sbjct: 471 -TMIHGAC-KAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQM 527



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 132/321 (41%), Gaps = 77/321 (23%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  LI    D+L++  A+ ++E+MV+G+                     N+V 
Sbjct: 286 VAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGK---------------------NIV- 323

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
                      KPN  TF S+I     I     A+ +   ++E   M     YN ++ G 
Sbjct: 324 -----------KPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGL 372

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN------CSNEEDIIKYYEQLKSAGGQ 180
            R   V+ A+ ++ EM    ++PDS T+S LI            ED++     ++  G +
Sbjct: 373 LRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLS---TMRDRGIE 429

Query: 181 ITKYVFMALINAYTTCGEFEKARQVV--LDAEIPVK------------SRSEVKSA--LV 224
              + ++ L+ A    G  E+AR +   +D   P+                ++K+A  L+
Sbjct: 430 PELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTAKELL 489

Query: 225 SALASHGRTSDAI---IVYEEIKEAGCNLEPRAVI----------------ALIEHLNSE 265
            ++   G T DA+   IV     ++G       V+                +LI+  +++
Sbjct: 490 KSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTK 549

Query: 266 GELNRLIQLLEEVHDPDYWMD 286
           GE+N++++L+ E+   +  +D
Sbjct: 550 GEINKVLELIREMITKNIALD 570



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/108 (20%), Positives = 56/108 (51%)

Query: 50  NSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKE 109
           ++++H   ++ +    + +   I    L P++ T+  +I++  K  D ++A  +L  +  
Sbjct: 470 STMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTA 529

Query: 110 MNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYL 157
              +P  +++++++ GY  K ++   L +++EM   N+  DS+  S L
Sbjct: 530 SGFLPDVAVFDSLIQGYSTKGEINKVLELIREMITKNIALDSKIISTL 577


>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 711

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 133/290 (45%), Gaps = 14/290 (4%)

Query: 1   MHAKLE--ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEE 58
           M AK E   +P   +Y  +I       K+  A ++  +M+Q   VP   T NSI++A  +
Sbjct: 104 MMAKEEGVCSPDVVTYNTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCK 163

Query: 59  SYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM 118
           +   +    +   +  + + PN  T+ SMI     +  ++ A  +  ++    L+P    
Sbjct: 164 ARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVS 223

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLK 175
           +N+ M    +    + A  +   M     +P+  T+  L+H  + E    D++ ++  +K
Sbjct: 224 WNSFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMK 283

Query: 176 SAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE---VKSALVSALASHGR 232
             G      VF  LI+AY   G  ++A  ++  +E+  +  S      S L+SAL   GR
Sbjct: 284 GDGIVANCLVFTILIDAYAKRGMMDEAMLIL--SEMQGQGLSPDVFTYSTLISALCRMGR 341

Query: 233 TSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHD 280
            +DA+  + ++   G  ++P  V+  +LI+   + G+L +  +L+ E+ +
Sbjct: 342 LADAVDKFNQM--IGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMN 389



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/317 (19%), Positives = 133/317 (41%), Gaps = 11/317 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           + P+  +Y  +I     L +   A  +  +M    L+P   + NS + + C+        
Sbjct: 182 VPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAA 241

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
              Y M    + +PN  T+  ++        F    S  + +K   ++    ++  ++  
Sbjct: 242 EIFYSMAAKGH-RPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDA 300

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQIT 182
           Y ++  +  A+++L EM+   + PD  T+S LI          D +  + Q+   G Q  
Sbjct: 301 YAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPN 360

Query: 183 KYVFMALINAYTTCGEFEKARQVV---LDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
             V+ +LI  + T G+  KA+++V   ++  IP +      +++V ++   GR  DA  +
Sbjct: 361 TVVYHSLIQGFCTHGDLVKAKELVYEMMNNGIP-RPNIAFFNSIVHSICKEGRVMDAHHI 419

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFK 299
           ++ +K+ G   +      LI+     GE+ +   +L+ +       D      L    FK
Sbjct: 420 FDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFK 479

Query: 300 --QLSSATDLLKQLKDK 314
             ++    +L +++ DK
Sbjct: 480 SGRIDDGLNLFREMSDK 496



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 72/156 (46%), Gaps = 7/156 (4%)

Query: 7   ITPSSASYKKLITYSC---DLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEF 62
           + P++  Y  LI   C   DL+K      V E M  G   P+    NSI+H+ C+E    
Sbjct: 357 VQPNTVVYHSLIQGFCTHGDLVKAKEL--VYEMMNNGIPRPNIAFFNSIVHSICKEGRVM 414

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           +    I+ ++     + +   F ++I     + +   A+S+LD +    + P    YN +
Sbjct: 415 D-AHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTL 473

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
           + GYF+   +   L + +EM    +KP + T++ ++
Sbjct: 474 VNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIIL 509



 Score = 42.7 bits (99), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 34/175 (19%), Positives = 74/175 (42%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +I P++ +Y  ++       +   A  ++ +M+      S  T N IL     +   +  
Sbjct: 497 KIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYNIILKGLCRNNCTDEA 556

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             ++  +C  N+K N  T  +MI+    ++  + A  L   + +  L+P AS Y  ++  
Sbjct: 557 IVMFQKLCTMNVKFNITTLNTMINSMYTVQRREEAKDLFSAISDSGLVPNASTYGIMIRN 616

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQ 180
             ++  V+ A  +   ME++   P S+  +  I     + +I+K    +    G+
Sbjct: 617 LLKEGSVEEADNMFSSMEKSGCAPCSRLLNDTIRTLLEKGEIVKAGNYMSKVDGK 671


>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
 gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
          Length = 734

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 88/419 (21%), Positives = 182/419 (43%), Gaps = 52/419 (12%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  LI   CD  +V  A++++ +M +  + P+    +S+L    +S  +  V +++  +
Sbjct: 152 TYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEM 211

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               ++P+   +  +I    K+     A+ ++D +    L P    YN ++    ++  V
Sbjct: 212 SEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSV 271

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINA 192
           + A+ VLK+M +  V PD  T++ LI   S   D+++  E              M L+  
Sbjct: 272 KEAIGVLKKMSEKGVAPDVVTYNTLIKGLS---DVLEMDEA-------------MWLLE- 314

Query: 193 YTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP 252
                E  + + +       VK      ++++  L   GR   A  V   ++E GC +  
Sbjct: 315 -----EMVRGKNI-------VKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNL 362

Query: 253 RAVIALIEHLNSEGELNRLIQLLEEVH----DPDYW-----MDGCCRLILHCVRFKQLSS 303
                LI  L    ++ + ++L++E+     +PD +     + G C++        Q+  
Sbjct: 363 VTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMW-------QVDR 415

Query: 304 ATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKC 363
           A DLL  ++D+  + E+   +H+  +   +A  +   ++   +L   + +   L      
Sbjct: 416 AEDLLSTMRDRGIEPEL---FHYIPLL--VAMCEQGMMERARNLFNEMDNNFPLDVVAYS 470

Query: 364 LDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
              + GAC  A DLK A  + K   + GL  + ++Y  +   F  SG+ ++A+ +L +M
Sbjct: 471 -TMIHGAC-KAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQM 527



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 132/321 (41%), Gaps = 77/321 (23%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  LI    D+L++  A+ ++E+MV+G+                     N+V 
Sbjct: 286 VAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGK---------------------NIV- 323

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
                      KPN  TF S+I     I     A+ +   ++E   M     YN ++ G 
Sbjct: 324 -----------KPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGL 372

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN------CSNEEDIIKYYEQLKSAGGQ 180
            R   V+ A+ ++ EM    ++PDS T+S LI            ED++     ++  G +
Sbjct: 373 LRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLL---STMRDRGIE 429

Query: 181 ITKYVFMALINAYTTCGEFEKARQVV--LDAEIPVK------------SRSEVKSA--LV 224
              + ++ L+ A    G  E+AR +   +D   P+                ++K+A  L+
Sbjct: 430 PELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTAKELL 489

Query: 225 SALASHGRTSDAI---IVYEEIKEAGCNLEPRAVI----------------ALIEHLNSE 265
            ++   G T DA+   IV     ++G       V+                +LI+  +++
Sbjct: 490 KSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTK 549

Query: 266 GELNRLIQLLEEVHDPDYWMD 286
           GE+N++++L+ E+   +  +D
Sbjct: 550 GEINKVLELIREMITKNIALD 570



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/108 (20%), Positives = 56/108 (51%)

Query: 50  NSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKE 109
           ++++H   ++ +    + +   I    L P++ T+  +I++  K  D ++A  +L  +  
Sbjct: 470 STMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTA 529

Query: 110 MNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYL 157
              +P  +++++++ GY  K ++   L +++EM   N+  DS+  S L
Sbjct: 530 SGFLPDVAVFDSLIQGYSTKGEINKVLELIREMITKNIALDSKIISTL 577


>gi|242095134|ref|XP_002438057.1| hypothetical protein SORBIDRAFT_10g007440 [Sorghum bicolor]
 gi|241916280|gb|EER89424.1| hypothetical protein SORBIDRAFT_10g007440 [Sorghum bicolor]
          Length = 499

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 128/276 (46%), Gaps = 5/276 (1%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGE-LVPSTETINSILHACEESYEFNL 64
           ++ P+  +Y  LI   C   K+  A ++ E+M++ + +VP     N I+       + + 
Sbjct: 218 DVKPNLVTYSTLIAGLCRGGKMMEAFELFEEMIEKDRIVPDQLLYNVIIDGFCRLGQVDK 277

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
            R I+  +  ++ +PN+  + ++I+ + K  D ++A S+ ++++   + P A  Y A++ 
Sbjct: 278 ARAIFGFMKKNDCEPNAFNYATLINGHCKKADIEAARSVFEEMRNAGVEPDAVSYTALIG 337

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA---GGQI 181
              R   V  A+ ++ EM+Q   + D  T++ +I     +   ++  + L+S    G ++
Sbjct: 338 CLCRHGSVDEAINLVLEMKQKGCRADVVTYNLVIEGLCRDGRTVEAMDLLESVPLEGVKL 397

Query: 182 TKYVFMALINAYTTCGEFEKA-RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
               +  L+N   + GE +KA   + L             + L+  L   GR +DA +  
Sbjct: 398 NVASYRILMNCLCSRGEMDKAVGLLGLMLGRGFLPHYAASNNLLIGLCDAGRIADATMAL 457

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276
             + +AG   E R    L+E +  E +  R  +LL+
Sbjct: 458 YGLADAGFMPEARCWERLVETMCRERKQRRSTELLD 493



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 97/209 (46%), Gaps = 8/209 (3%)

Query: 78  KPNSETFRSMISLNVKIKDFDSAYSLLDDLKE---MNLMPTASMYNAIMAGYFRKKDVQG 134
           +PN+  +  +I   V+I + ++A+ +LD+++E    ++ P    Y+ ++AG  R   +  
Sbjct: 182 RPNTCVYNILIKHFVRIGELETAFKVLDEMREYTCADVKPNLVTYSTLIAGLCRGGKMME 241

Query: 135 ALMVLKEM-EQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALI 190
           A  + +EM E+  + PD   ++ +I        + K    +  +K    +   + +  LI
Sbjct: 242 AFELFEEMIEKDRIVPDQLLYNVIIDGFCRLGQVDKARAIFGFMKKNDCEPNAFNYATLI 301

Query: 191 NAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
           N +    + E AR V  +     V+  +   +AL+  L  HG   +AI +  E+K+ GC 
Sbjct: 302 NGHCKKADIEAARSVFEEMRNAGVEPDAVSYTALIGCLCRHGSVDEAINLVLEMKQKGCR 361

Query: 250 LEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            +      +IE L  +G     + LLE V
Sbjct: 362 ADVVTYNLVIEGLCRDGRTVEAMDLLESV 390


>gi|356503775|ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Glycine max]
          Length = 777

 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 76/386 (19%), Positives = 158/386 (40%), Gaps = 39/386 (10%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A D+   M +   VPST ++N +L    +S  F     ++  +     +P++  +   + 
Sbjct: 106 ATDLYSTMRKDGFVPSTRSVNRLLRTLVDSRHFEKTLAVFADVIDSGTRPDAVAYGKAVQ 165

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
             V +KD D  + L+  + +  + P+   YN ++ G  + + ++ A  +  EM Q N+ P
Sbjct: 166 AAVMLKDLDKGFELMKSMVKDGMGPSVFAYNLVLGGLCKVRRIKDARKLFDEMIQRNMVP 225

Query: 150 DSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           ++ T++ LI         E+ + + E++K    +     + +L+N     G  + AR+V+
Sbjct: 226 NTVTYNTLIDGYCKVGGIEEALGFKERMKEQNVECNLVTYNSLLNGLCGSGRVDDAREVL 285

Query: 207 LDAEIPVKSRSEVKSALVSALA---SHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
           L+ E        +    +S +    S+G   D +   +EI+     ++ R    L+  L 
Sbjct: 286 LEME----GSGFLPGGFLSFVFDDHSNGAGDDGLFDGKEIR-----IDERTYCILLNGLC 336

Query: 264 SEGELNR----LIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDE 319
             G + +    L +L+E    P          I + +         D+ K +    + +E
Sbjct: 337 RVGRIEKAEEVLAKLVENGVTPSK--------ISYNILVNAYCQEGDVKKAILTTEQMEE 388

Query: 320 MAMEYH---FSEI---FCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVN 373
             +E +   F+ +   FC+    D  +  +   +      E G+ P+ +  + L+     
Sbjct: 389 RGLEPNRITFNTVISKFCETGEVDHAETWVRRMV------EKGVSPTVETYNSLINGYGQ 442

Query: 374 ARDLKRAHLIWKEYENAGLPYNVLSY 399
                R      E + AG+  NV+SY
Sbjct: 443 KGHFVRCFEFLDEMDKAGIKPNVISY 468



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 109/245 (44%), Gaps = 4/245 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           +TPS  SY  L+   C    V  A+   EQM +  L P+  T N+++    E+ E +   
Sbjct: 356 VTPSKISYNILVNAYCQEGDVKKAILTTEQMEERGLEPNRITFNTVISKFCETGEVDHAE 415

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
                +    + P  ET+ S+I+   +   F   +  LD++ +  + P    Y +++   
Sbjct: 416 TWVRRMVEKGVSPTVETYNSLINGYGQKGHFVRCFEFLDEMDKAGIKPNVISYGSLINCL 475

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITK 183
            + + +  A +VL +M    V P+++ ++ LI    + S  +D  ++++++  +G   T 
Sbjct: 476 CKDRKLIDAEIVLADMIGRGVSPNAEIYNMLIEASCSLSKLKDAFRFFDEMIQSGIDATL 535

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             +  LIN     G  +KA  + L  A           ++L+S  A    T   + +Y++
Sbjct: 536 VTYNTLINGLGRNGRVKKAEDLFLQMAGKGCNPDVITYNSLISGYAKSVNTQKCLELYDK 595

Query: 243 IKEAG 247
           +K  G
Sbjct: 596 MKILG 600



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 115/265 (43%), Gaps = 11/265 (4%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P + +Y K +  +  L  +    ++++ MV+  + PS    N +L    +       R++
Sbjct: 155 PDAVAYGKAVQAAVMLKDLDKGFELMKSMVKDGMGPSVFAYNLVLGGLCKVRRIKDARKL 214

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +   N+ PN+ T+ ++I    K+   + A    + +KE N+      YN+++ G   
Sbjct: 215 FDEMIQRNMVPNTVTYNTLIDGYCKVGGIEEALGFKERMKEQNVECNLVTYNSLLNGLCG 274

Query: 129 KKDVQGALMVLKEMEQANVKPDS-QTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFM 187
              V  A  VL EME +   P    +F +  H+    +D +   ++++     I +  + 
Sbjct: 275 SGRVDDAREVLLEMEGSGFLPGGFLSFVFDDHSNGAGDDGLFDGKEIR-----IDERTYC 329

Query: 188 ALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA 246
            L+N     G  EKA +V+    E  V       + LV+A    G    AI+  E+++E 
Sbjct: 330 ILLNGLCRVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKAILTTEQMEER 389

Query: 247 GCNLEPRAVI--ALIEHLNSEGELN 269
           G  LEP  +    +I      GE++
Sbjct: 390 G--LEPNRITFNTVISKFCETGEVD 412



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/282 (19%), Positives = 115/282 (40%), Gaps = 40/282 (14%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           ++P++  Y  LI  SC L K+  A    ++M+Q  +  +  T N++++    +       
Sbjct: 496 VSPNAEIYNMLIEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKAE 555

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +      P+  T+ S+IS   K  +      L D +K + + PT   ++ ++   
Sbjct: 556 DLFLQMAGKGCNPDVITYNSLISGYAKSVNTQKCLELYDKMKILGIKPTVGTFHPLIYAC 615

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITK 183
            RK+ V     + +EM Q ++ PD   ++ +I++ + + +++K    ++Q+   G    K
Sbjct: 616 -RKEGVVTMDKMFQEMLQMDLVPDQFVYNEMIYSYAEDGNVMKAMSLHQQMVDQGVDCDK 674

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAE------------IPVKSRSEVKS---------- 221
             + +LI AY       + + +V D +            I +K   ++K           
Sbjct: 675 VTYNSLILAYLRDRRVSEIKHLVDDMKAKGLVPKVDTYNILIKGLCDLKDFNGAYFWYRE 734

Query: 222 --------------ALVSALASHGRTSDAIIVYEEIKEAGCN 249
                          L+S L   G   +A IV  E+   G N
Sbjct: 735 MVERGLLLNVSMCYQLISGLREEGMLREAQIVSSELSIGGLN 776



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 65/347 (18%), Positives = 134/347 (38%), Gaps = 71/347 (20%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P++ +Y  LI   C +  +  AL   E+M +  +  +  T NS+L+    S   +  R
Sbjct: 223 MVPNTVTYNTLIDGYCKVGGIEEALGFKERMKEQNVECNLVTYNSLLNGLCGSGRVDDAR 282

Query: 67  RI----------------YPMICHHN------------LKPNSETFRSMISLNVKIKDFD 98
            +                +    H N            ++ +  T+  +++   ++   +
Sbjct: 283 EVLLEMEGSGFLPGGFLSFVFDDHSNGAGDDGLFDGKEIRIDERTYCILLNGLCRVGRIE 342

Query: 99  SAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            A  +L  L E  + P+   YN ++  Y ++ DV+ A++  ++ME+  ++P+  TF+ +I
Sbjct: 343 KAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKAILTTEQMEERGLEPNRITFNTVI 402

Query: 159 HN-CSNEE--DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV---------- 205
              C   E      +  ++   G   T   + +LIN Y   G F +  +           
Sbjct: 403 SKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQKGHFVRCFEFLDEMDKAGIK 462

Query: 206 ------------------VLDAEI--------PVKSRSEVKSALVSALASHGRTSDAIIV 239
                             ++DAEI         V   +E+ + L+ A  S  +  DA   
Sbjct: 463 PNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEIYNMLIEASCSLSKLKDAFRF 522

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNR----LIQLLEEVHDPD 282
           ++E+ ++G +        LI  L   G + +     +Q+  +  +PD
Sbjct: 523 FDEMIQSGIDATLVTYNTLINGLGRNGRVKKAEDLFLQMAGKGCNPD 569


>gi|168022838|ref|XP_001763946.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684951|gb|EDQ71350.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 727

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 93/451 (20%), Positives = 178/451 (39%), Gaps = 31/451 (6%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I  S  +Y  LI        +  A+  VE+M    + P+  T ++I+     S       
Sbjct: 154 IDSSVHAYNNLIRAYIMAQNLQGAVSCVEEMEIEGIFPNAATFSAIISGYGSSGNVEAAE 213

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           + +      N   N   + S+I    K  + + A +L+ D++E  L  T  +YN +M GY
Sbjct: 214 KWFQRSVSENWNHNVAIYSSIIHAYCKAGNMERAEALVADMEEQGLEATLGLYNILMDGY 273

Query: 127 FRKKDVQGALMV---LKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQ 180
            R       L V   LK      + P + T+  LI+  +    ++K  E   ++K+ G  
Sbjct: 274 ARCHIEAQCLNVFHKLKARIDTGLSPTAVTYGCLINLYTKLGKMMKALEFCKEMKAQGIT 333

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
           + +  +  L++ Y   G+F  A  V  D +E  ++      + L+ A     + + AI +
Sbjct: 334 LNRNTYSMLVDGYVQLGDFANAFSVFEDMSEAGIEPDWVTYNILLKAFCKSRQMTRAIQL 393

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC------CRLIL 293
              +K  GC+   +  I +I+     G++    + + E+      + GC        +I+
Sbjct: 394 LGRMKTRGCSPTIQTYITIIDGFMKTGDVRMAYKTVSEMK-----LAGCRPNATTYNVIM 448

Query: 294 H-CVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIK 352
           H  V+  Q+  A  ++ +++               + F  I      ++ +    L+ + 
Sbjct: 449 HNLVQLGQIDRAASVIDEMELAGVQPNFRSYTTLMQGFASIG-----EIGLAFKCLKRV- 502

Query: 353 DELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNR 412
           +E+   P       LL AC  A  ++ A  + +E   AG+P N   +  +   +   G+ 
Sbjct: 503 NEITQKPPIISYASLLKACCKAGRMQNAIAVTEEMAFAGVPMNNYIFNTLLDGWAQRGDM 562

Query: 413 KSASKLLSKM------PKDDPHVRFVIQACK 437
             A  ++ KM      P    +  FV   CK
Sbjct: 563 WEAYGIMQKMRQEGFTPDIHSYTSFVNACCK 593



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/314 (19%), Positives = 138/314 (43%), Gaps = 6/314 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           ++P++ +Y  LI     L K+  AL+  ++M    +  +  T + ++    +  +F    
Sbjct: 297 LSPTAVTYGCLINLYTKLGKMMKALEFCKEMKAQGITLNRNTYSMLVDGYVQLGDFANAF 356

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +    ++P+  T+  ++    K +    A  LL  +K     PT   Y  I+ G+
Sbjct: 357 SVFEDMSEAGIEPDWVTYNILLKAFCKSRQMTRAIQLLGRMKTRGCSPTIQTYITIIDGF 416

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITK 183
            +  DV+ A   + EM+ A  +P++ T++ ++HN      I +     ++++ AG Q   
Sbjct: 417 MKTGDVRMAYKTVSEMKLAGCRPNATTYNVIMHNLVQLGQIDRAASVIDEMELAGVQPNF 476

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             +  L+  + + GE   A + +    EI  K      ++L+ A    GR  +AI V EE
Sbjct: 477 RSYTTLMQGFASIGEIGLAFKCLKRVNEITQKPPIISYASLLKACCKAGRMQNAIAVTEE 536

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD--GCCRLILHCVRFKQ 300
           +  AG  +       L++     G++     +++++    +  D       +  C +   
Sbjct: 537 MAFAGVPMNNYIFNTLLDGWAQRGDMWEAYGIMQKMRQEGFTPDIHSYTSFVNACCKAGD 596

Query: 301 LSSATDLLKQLKDK 314
           +  AT+ ++++K +
Sbjct: 597 MQKATETIEEMKQQ 610



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/175 (20%), Positives = 84/175 (48%), Gaps = 3/175 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  SY  L+     + ++ +A   ++++ +    P   +  S+L AC ++       
Sbjct: 472 VQPNFRSYTTLMQGFASIGEIGLAFKCLKRVNEITQKPPIISYASLLKACCKAGRMQNAI 531

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +    +  N+  F +++    +  D   AY ++  +++    P    Y + +   
Sbjct: 532 AVTEEMAFAGVPMNNYIFNTLLDGWAQRGDMWEAYGIMQKMRQEGFTPDIHSYTSFVNAC 591

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAG 178
            +  D+Q A   ++EM+Q +++P+ QT++ LIH   + S+ E  +  Y+++K+AG
Sbjct: 592 CKAGDMQKATETIEEMKQQDLQPNLQTYTILIHGWTSVSHPEKALICYDEMKAAG 646


>gi|449444614|ref|XP_004140069.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Cucumis sativus]
 gi|449528063|ref|XP_004171026.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Cucumis sativus]
          Length = 536

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 101/235 (42%), Gaps = 6/235 (2%)

Query: 24  LLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSET 83
           L K   A D   +M     +P+ E+ N+ L +       ++    Y  +    + PNS T
Sbjct: 181 LKKFRNASDTFCRMKDYGFLPTVESCNAYLSSLLNFSRGDIALAFYREMRRSRIYPNSYT 240

Query: 84  FRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME 143
              +I    K+   D A  + +++  M   P  + YN ++AGY  K  +  A+ +   ME
Sbjct: 241 LNLVICACCKLGRLDKANVVFEEMGTMGFSPNVASYNTLIAGYCNKGLLSSAMKLRSVME 300

Query: 144 QANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFE 200
           +  V PD  TF+ L++        ++  K + ++K      T   +  LIN Y+  G  E
Sbjct: 301 KNGVPPDVVTFNTLVNGFCKVGKLQEASKLFGEMKGMSLSPTTVTYNILINGYSKAGNCE 360

Query: 201 KARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRA 254
              ++  + +   VK+     +AL+  L   G+T  A  +  E+ E G  L P A
Sbjct: 361 MGNRLFEEMSRFQVKADILTYNALILGLCKEGKTKKAAYLVRELDEKG--LVPNA 413



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 76/160 (47%), Gaps = 1/160 (0%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   ++  L+   C + K+  A  +  +M    L P+T T N +++   ++    +  
Sbjct: 304 VPPDVVTFNTLVNGFCKVGKLQEASKLFGEMKGMSLSPTTVTYNILINGYSKAGNCEMGN 363

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R++  +    +K +  T+ ++I    K      A  L+ +L E  L+P AS ++A++ G 
Sbjct: 364 RLFEEMSRFQVKADILTYNALILGLCKEGKTKKAAYLVRELDEKGLVPNASTFSALIYGQ 423

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE 165
             +K  + A  + K M +++  P  QTF  L+   C NE+
Sbjct: 424 CVQKQSERAFQIYKSMIKSSFTPCDQTFRMLLSTFCENED 463



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/247 (17%), Positives = 111/247 (44%), Gaps = 6/247 (2%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
             +  +P+ ASY  LI   C+   +  A+ +   M +  + P   T N++++   +  + 
Sbjct: 265 GTMGFSPNVASYNTLIAGYCNKGLLSSAMKLRSVMEKNGVPPDVVTFNTLVNGFCKVGKL 324

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
               +++  +   +L P + T+  +I+   K  + +    L +++    +      YNA+
Sbjct: 325 QEASKLFGEMKGMSLSPTTVTYNILINGYSKAGNCEMGNRLFEEMSRFQVKADILTYNAL 384

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-C--SNEEDIIKYYEQLKSAGG 179
           + G  ++   + A  +++E+++  + P++ TFS LI+  C     E   + Y+ +  +  
Sbjct: 385 ILGLCKEGKTKKAAYLVRELDEKGLVPNASTFSALIYGQCVQKQSERAFQIYKSMIKSSF 444

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAI 237
                 F  L++ +    +++ A Q +L+  +      +V +   L + L   G+   A+
Sbjct: 445 TPCDQTFRMLLSTFCENEDYDGAVQ-LLEEMLNRHKAPDVNNLYELCAGLGQCGKVKTAM 503

Query: 238 IVYEEIK 244
           ++  E++
Sbjct: 504 MLCSELE 510



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/149 (21%), Positives = 70/149 (46%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           ++ ++     +Y  LI   C   K   A  +V ++ +  LVP+  T +++++      + 
Sbjct: 370 SRFQVKADILTYNALILGLCKEGKTKKAAYLVRELDEKGLVPNASTFSALIYGQCVQKQS 429

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
               +IY  +   +  P  +TFR ++S   + +D+D A  LL+++   +  P  +    +
Sbjct: 430 ERAFQIYKSMIKSSFTPCDQTFRMLLSTFCENEDYDGAVQLLEEMLNRHKAPDVNNLYEL 489

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDS 151
            AG  +   V+ A+M+  E+E   + P+ 
Sbjct: 490 CAGLGQCGKVKTAMMLCSELEAQRLLPEG 518


>gi|224129154|ref|XP_002320514.1| predicted protein [Populus trichocarpa]
 gi|222861287|gb|EEE98829.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 103/205 (50%), Gaps = 3/205 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           ITP+  SY  LI   C+   + +A  +   M +  L P+  T NS++H   +  + +   
Sbjct: 230 ITPNVVSYNTLIAGHCNKGLLSIATKLKNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEAN 289

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R +  +   N+ PN+ T+ ++I+   ++ + + A  + +++    +      YNA++ G 
Sbjct: 290 RFFSEMKVMNVTPNTVTYNTLINGYGQVGNSNMAGKVYEEMMRNGVKADILTYNALILGL 349

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CS--NEEDIIKYYEQLKSAGGQITK 183
            ++   + A  ++KE+++ N+ P++ T+S LI   C+  N +   + Y+ +  +G    +
Sbjct: 350 CKEGKTKKAAFLVKELDKENLVPNASTYSALISGQCARKNSDRAFQLYKSMVRSGCHPNE 409

Query: 184 YVFMALINAYTTCGEFEKARQVVLD 208
             F  L +A+    +FE A  V++D
Sbjct: 410 QTFKMLTSAFVKNEDFEGAFNVLMD 434



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 111/255 (43%), Gaps = 8/255 (3%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           K   A DV  +M     +P+ E+ N+ L +  + +  ++    Y  +    + PNS TF 
Sbjct: 144 KFRNATDVFSRMKDYGFLPTVESCNAYLSSLLDFHRVDIALTFYREMRRCRISPNSYTFN 203

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
            ++S   K    + A  +L +++ + + P    YN ++AG+  K  +  A  +   M + 
Sbjct: 204 LVLSALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIAGHCNKGLLSIATKLKNLMGKN 263

Query: 146 NVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
            ++P+  TF+ LIH    E    +  +++ ++K          +  LIN Y   G    A
Sbjct: 264 GLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGNSNMA 323

Query: 203 RQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALI 259
            +V  +     VK+     +AL+  L   G+T  A  + +E+ +   NL P A    ALI
Sbjct: 324 GKVYEEMMRNGVKADILTYNALILGLCKEGKTKKAAFLVKELDKE--NLVPNASTYSALI 381

Query: 260 EHLNSEGELNRLIQL 274
               +    +R  QL
Sbjct: 382 SGQCARKNSDRAFQL 396



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 128/296 (43%), Gaps = 15/296 (5%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  S    ++   D  +V +AL    +M +  + P++ T N +L A  +S +      +
Sbjct: 162 PTVESCNAYLSSLLDFHRVDIALTFYREMRRCRISPNSYTFNLVLSALCKSGKLEKAVEV 221

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    + PN  ++ ++I+ +        A  L + + +  L P    +N+++ G+ +
Sbjct: 222 LREMESVGITPNVVSYNTLIAGHCNKGLLSIATKLKNLMGKNGLEPNVVTFNSLIHGFCK 281

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYV 185
           +  +  A     EM+  NV P++ T++ LI+      N     K YE++   G +     
Sbjct: 282 EGKLHEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGNSNMAGKVYEEMMRNGVKADILT 341

Query: 186 FMALINAYTTCGEFEKARQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
           + ALI      G+ +KA  +V  LD E  V + S   SAL+S   +   +  A  +Y+ +
Sbjct: 342 YNALILGLCKEGKTKKAAFLVKELDKENLVPNASTY-SALISGQCARKNSDRAFQLYKSM 400

Query: 244 KEAGCNLEPRA----VIALIEHLNSEGELNRLIQLLEEVHDPDY-----WMDGCCR 290
             +GC+   +       A +++ + EG  N L+ +       D        DG C+
Sbjct: 401 VRSGCHPNEQTFKMLTSAFVKNEDFEGAFNVLMDMFARSMASDSNTLLEIYDGLCQ 456



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 8/142 (5%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-C---EESYEFNLVRRI 68
           +Y  LI   C   K   A  +V+++ +  LVP+  T ++++   C        F L + +
Sbjct: 341 TYNALILGLCKEGKTKKAAFLVKELDKENLVPNASTYSALISGQCARKNSDRAFQLYKSM 400

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
               CH    PN +TF+ + S  VK +DF+ A+++L D+   ++   ++    I  G  +
Sbjct: 401 VRSGCH----PNEQTFKMLTSAFVKNEDFEGAFNVLMDMFARSMASDSNTLLEIYDGLCQ 456

Query: 129 KKDVQGALMVLKEMEQANVKPD 150
                 A+ +  EME   + P+
Sbjct: 457 CGKENLAMKLCHEMEARRLIPE 478



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 45/234 (19%), Positives = 88/234 (37%), Gaps = 39/234 (16%)

Query: 84  FRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME 143
           F S+      +  F +A  +   +K+   +PT    NA ++       V  AL   +EM 
Sbjct: 132 FDSLFKTYAHMNKFRNATDVFSRMKDYGFLPTVESCNAYLSSLLDFHRVDIALTFYREMR 191

Query: 144 QANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAG-------------GQITK---- 183
           +  + P+S TF+ ++         E  ++   +++S G             G   K    
Sbjct: 192 RCRISPNSYTFNLVLSALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIAGHCNKGLLS 251

Query: 184 ------------------YVFMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALV 224
                               F +LI+ +   G+  +A +   + ++  V   +   + L+
Sbjct: 252 IATKLKNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTYNTLI 311

Query: 225 SALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           +     G ++ A  VYEE+   G   +     ALI  L  EG+  +   L++E+
Sbjct: 312 NGYGQVGNSNMAGKVYEEMMRNGVKADILTYNALILGLCKEGKTKKAAFLVKEL 365


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 116/243 (47%), Gaps = 17/243 (6%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEES-YEFNLVRRIYPM 71
           S+  +I+      +V  A+   E+M + ++ P+  T+ S+L AC +S     L   +   
Sbjct: 227 SWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSW 286

Query: 72  ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131
           I    L  N      +I + VK  D + A +L + +++ N++     +N ++ GY     
Sbjct: 287 IEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVS----WNVMIGGYTHMSC 342

Query: 132 VQGALMVLKEMEQANVKPDSQTFSYLIHNCSN--EEDIIKYY-----EQLKSAGGQITKY 184
            + AL + + M Q+N+ P+  TF  ++  C+N    D+ K+      + +KS    +   
Sbjct: 343 YKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVA-- 400

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           ++ +LI+ Y  CG+   A++ + D  +  KS +   +A++S  A HG T  A+ ++  + 
Sbjct: 401 LWTSLIDMYAKCGDLAVAKR-IFDC-MNTKSLA-TWNAMISGFAMHGHTDTALGLFSRMT 457

Query: 245 EAG 247
             G
Sbjct: 458 SEG 460



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 98/232 (42%), Gaps = 22/232 (9%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSET---FRS 86
           AL +  +M+Q  + P+  T  SIL AC      +L + ++  +   N+K    T   + S
Sbjct: 346 ALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYV-DKNMKSMKNTVALWTS 404

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           +I +  K  D   A  + D +   +L    + +NA+++G+        AL +   M    
Sbjct: 405 LIDMYAKCGDLAVAKRIFDCMNTKSL----ATWNAMISGFAMHGHTDTALGLFSRMTSEG 460

Query: 147 VKPDSQTFSYLIHNCSNEEDII---KYYEQL---KSAGGQITKYVFMALINAYTTCGEFE 200
             PD  TF  ++  C +   +    +Y+  +        ++  Y  M  I+ +   G F+
Sbjct: 461 FVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCM--IDLFGRAGLFD 518

Query: 201 KARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP 252
           +A  +V + E+  K    +  +L+ A   H R   A  V + + E    LEP
Sbjct: 519 EAETLVKNMEM--KPDGAIWCSLLGACRIHRRIELAESVAKHLFE----LEP 564


>gi|6692112|gb|AAF24577.1|AC007764_19 F22C12.14 [Arabidopsis thaliana]
          Length = 661

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/285 (20%), Positives = 131/285 (45%), Gaps = 8/285 (2%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           EI P   ++  LI+ S    K+  A  + ++M+   + P T T NS+++   +   F+  
Sbjct: 356 EINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDA 415

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           + ++ ++      P+  TF ++I +  + K  D    LL ++    L+   + YN ++ G
Sbjct: 416 KHMFDLMA----SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHG 471

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQIT 182
           +    ++  A  + +EM    V PD+ T + L++  C NE  E+ ++ +E ++ +   + 
Sbjct: 472 FCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLD 531

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYE 241
              +  +I+      + ++A  +     I  V+   +  + ++S        SDA +++ 
Sbjct: 532 TVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFH 591

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
           ++K+ G   +      LI      GE+++ I+L+ E+    +  D
Sbjct: 592 KMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGD 636



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 44/231 (19%), Positives = 97/231 (41%), Gaps = 3/231 (1%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           L  +P   ++  +I   C   +V   + ++ ++ +  LV +T T N+++H   E    N 
Sbjct: 421 LMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNA 480

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
            + ++  +  H + P++ T   ++    + +  + A  L + ++   +      YN I+ 
Sbjct: 481 AQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIH 540

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQI 181
           G  +   V  A  +   +    V+PD QT++ +I   C      D    + ++K  G + 
Sbjct: 541 GMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEP 600

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGR 232
               +  LI      GE +K+ +++ +      S       +V+ L + GR
Sbjct: 601 DNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVADLITDGR 651



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 105/239 (43%), Gaps = 16/239 (6%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEE---SYEFNL---- 64
           S+  LI   CD  K+  +L    ++ +    P   T N++LH  C E   S    L    
Sbjct: 143 SFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYM 202

Query: 65  --VRRIYPMICHHNLKPNSETFRSMIS-LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
                ++  +    L P   TF ++I+ L ++ +  ++A +L++ +    L      Y  
Sbjct: 203 VETGSLFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAA-ALVNKMVGKGLHIDVVTYGT 261

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAG 178
           I+ G  +  D + AL +L +ME+ ++KPD   +S +I       +  D    + ++   G
Sbjct: 262 IVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKG 321

Query: 179 GQITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDA 236
                + +  +I+ + + G +  A++++ D  E  +       +AL+SA    G+  +A
Sbjct: 322 IAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEA 380



 Score = 42.0 bits (97), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 38/198 (19%), Positives = 88/198 (44%), Gaps = 7/198 (3%)

Query: 12  ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSIL-HACEESYEFNLVRRIYP 70
            +Y  ++   C +     AL+++ +M +  + P     ++I+   C++ +  +  + ++ 
Sbjct: 257 VTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSD-AQYLFS 315

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
            +    + PN  T+  MI        +  A  LL D+ E  + P    +NA+++   ++ 
Sbjct: 316 EMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEG 375

Query: 131 DVQGALMVLKEMEQANVKPDSQTFSYLIHN-CS-NEEDIIKYYEQLKSAGGQITKYVFMA 188
            +  A  +  EM    + PD+ T++ +I+  C  N  D  K+   L ++   +T   F  
Sbjct: 376 KLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVT---FNT 432

Query: 189 LINAYTTCGEFEKARQVV 206
           +I+ Y      ++  Q++
Sbjct: 433 IIDVYCRAKRVDEGMQLL 450


>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
 gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 666

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/286 (20%), Positives = 131/286 (45%), Gaps = 8/286 (2%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           EI P   ++  LI+ S    K+  A  + ++M+   + P T T NS+++   +   F+  
Sbjct: 361 EINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDA 420

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           + ++ ++      P+  TF ++I +  + K  D    LL ++    L+   + YN ++ G
Sbjct: 421 KHMFDLMA----SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHG 476

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQIT 182
           +    ++  A  + +EM    V PD+ T + L++  C NE  E+ ++ +E ++ +   + 
Sbjct: 477 FCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLD 536

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYE 241
              +  +I+      + ++A  +     I  V+   +  + ++S        SDA +++ 
Sbjct: 537 TVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFH 596

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDG 287
           ++K+ G   +      LI      GE+++ I+L+ E+    +  D 
Sbjct: 597 KMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDA 642



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 44/231 (19%), Positives = 97/231 (41%), Gaps = 3/231 (1%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           L  +P   ++  +I   C   +V   + ++ ++ +  LV +T T N+++H   E    N 
Sbjct: 426 LMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNA 485

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
            + ++  +  H + P++ T   ++    + +  + A  L + ++   +      YN I+ 
Sbjct: 486 AQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIH 545

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQI 181
           G  +   V  A  +   +    V+PD QT++ +I   C      D    + ++K  G + 
Sbjct: 546 GMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEP 605

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGR 232
               +  LI      GE +K+ +++ +      S       +V+ L + GR
Sbjct: 606 DNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVADLITDGR 656



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 51/244 (20%), Positives = 104/244 (42%), Gaps = 21/244 (8%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEES------------ 59
           S+  LI   CD  K+  +L    ++ +    P   T N++LH  C E             
Sbjct: 143 SFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYM 202

Query: 60  --YEFNLVRRIYPMICHHNLKPNSETFRSMIS-LNVKIKDFDSAYSLLDDLKEMNLMPTA 116
               F     ++  +    L P   TF ++I+ L ++ +  ++A +L++ +    L    
Sbjct: 203 VETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAA-ALVNKMVGKGLHIDV 261

Query: 117 SMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQ 173
             Y  I+ G  +  D + AL +L +ME+ ++KPD   +S +I       +  D    + +
Sbjct: 262 VTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSE 321

Query: 174 LKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGR 232
           +   G     + +  +I+ + + G +  A++++ D  E  +       +AL+SA    G+
Sbjct: 322 MLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGK 381

Query: 233 TSDA 236
             +A
Sbjct: 382 LFEA 385



 Score = 42.0 bits (97), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 38/198 (19%), Positives = 88/198 (44%), Gaps = 7/198 (3%)

Query: 12  ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSIL-HACEESYEFNLVRRIYP 70
            +Y  ++   C +     AL+++ +M +  + P     ++I+   C++ +  +  + ++ 
Sbjct: 262 VTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSD-AQYLFS 320

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
            +    + PN  T+  MI        +  A  LL D+ E  + P    +NA+++   ++ 
Sbjct: 321 EMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEG 380

Query: 131 DVQGALMVLKEMEQANVKPDSQTFSYLIHN-CS-NEEDIIKYYEQLKSAGGQITKYVFMA 188
            +  A  +  EM    + PD+ T++ +I+  C  N  D  K+   L ++   +T   F  
Sbjct: 381 KLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVT---FNT 437

Query: 189 LINAYTTCGEFEKARQVV 206
           +I+ Y      ++  Q++
Sbjct: 438 IIDVYCRAKRVDEGMQLL 455


>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
          Length = 526

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 136/299 (45%), Gaps = 18/299 (6%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +I+   +      AL++ + M++  + P   T+ +++ AC +S    L R+++  I
Sbjct: 187 SWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWI 246

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
             H    N +   ++I L  K  + ++A  L + L   +++     +N ++ GY      
Sbjct: 247 DDHGFGSNLKIVNALIDLYSKCGEVETACGLFEGLSYKDVIS----WNTLIGGYTHMNLY 302

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI-----IKYYEQLKSAGGQITKYVFM 187
           + AL++ +EM ++   P+  T   ++  C++   I     I  Y   +  G      +  
Sbjct: 303 KEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLT 362

Query: 188 ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           +LI+ Y  CG+ E A+Q V D+ +  +S S   +A++   A HG+ + A  ++ ++++ G
Sbjct: 363 SLIDMYAKCGDIEAAKQ-VFDSML-TRSLSS-WNAMIFGFAMHGKANAAFDLFSKMRKNG 419

Query: 248 CNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD-----PDYWMDGC-CRLILHCVRFKQ 300
            + +    + L+   +  G L+    +   +       P     GC   L+ HC  FK+
Sbjct: 420 IDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKE 478



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 96/207 (46%), Gaps = 12/207 (5%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHH--NLKPNSETFRSM 87
           AL + ++M++    P+  T+ SIL AC      ++ R I+  I      +   S    S+
Sbjct: 305 ALLLFQEMLRSGESPNDVTMLSILPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSL 364

Query: 88  ISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANV 147
           I +  K  D ++A  + D +    L  + S +NA++ G+        A  +  +M +  +
Sbjct: 365 IDMYAKCGDIEAAKQVFDSM----LTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGI 420

Query: 148 KPDSQTFSYLIHNCSNEE--DIIKYYEQLKSAGGQITKYV--FMALINAYTTCGEFEKAR 203
            PD  TF  L+  CS+    D+ ++  +  S   +IT  +  +  +I+    CG F++A+
Sbjct: 421 DPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAK 480

Query: 204 QVVLDAEIPVKSRSEVKSALVSALASH 230
           +++    +P++    +  +L+ A   H
Sbjct: 481 EMI--RTMPMEPDGVIWCSLLKACKMH 505



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 5/128 (3%)

Query: 80  NSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM--YNAIMAGYFRKKDVQGALM 137
           +  + R ++S    IK + S   + +  K  + +P   +  +NA+++GY    + + AL 
Sbjct: 147 DQSSHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALE 206

Query: 138 VLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYT 194
           + K+M + NV+PD  T   ++  C+    I    + +  +   G      +  ALI+ Y+
Sbjct: 207 LFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYS 266

Query: 195 TCGEFEKA 202
            CGE E A
Sbjct: 267 KCGEVETA 274


>gi|255584017|ref|XP_002532754.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527505|gb|EEF29631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 721

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 107/471 (22%), Positives = 183/471 (38%), Gaps = 64/471 (13%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYE 61
            K  I  +   Y  LI   C L     A    ++M+   L P+  T  S++   C E  E
Sbjct: 254 TKASIEFTVYPYNSLINGYCKLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEG-E 312

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
           ++   ++Y  +    + PN+ TF ++IS   +      A  L  ++KE  +MP+   YN 
Sbjct: 313 WHKAFKVYNEMTAKGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNV 372

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CS--NEEDIIKYYEQLKSAG 178
           ++ G+ R  ++  A  +L EM      PD+ T+  LI   CS     +  ++ + L    
Sbjct: 373 MIEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDH 432

Query: 179 GQITKYVFMALINAYTTCGEFEKA---------RQVVLDAE-----IPVKSRSEVKSALV 224
            ++    + AL++ Y   G F+ A         R V +D       I   +R     AL 
Sbjct: 433 HKLNNMCYSALVHGYCKEGRFKDAVSACRVMVERGVAMDLVCYAILIDGTAREHDTRALF 492

Query: 225 SALA---SHGRTSDAIIVYEEI---------KEA----------GCNLEPRAVIALIEHL 262
             L    +HG   DA+I    I         KEA          GC        ALI  L
Sbjct: 493 GLLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGL 552

Query: 263 NSEGELNRLIQLLEE--VHD--PDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDD 318
              G +++   L +E  V D  P++   GC   + H  R   +  A  L   +   F   
Sbjct: 553 CKAGLMDKAELLSKETLVSDVTPNHITYGC--FLDHLTRGGNMEKAVQLHHAMLKGFLAT 610

Query: 319 EMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLK 378
            ++        FC++       ++    LL  + D   LP      D++  + +     K
Sbjct: 611 TVSYNI-LIRGFCRLG-----KIEEATKLLHGMTDNDILP------DYITYSTIIYEQCK 658

Query: 379 RAHL-----IWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424
           R++L     +W    + GL  + L+Y ++      +G  + A +L  +M +
Sbjct: 659 RSNLQEAIKLWHTMLDKGLKPDTLAYSFLVHGCCIAGELEKAFELRDEMIR 709



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 92/423 (21%), Positives = 167/423 (39%), Gaps = 32/423 (7%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           S   Y  LI   C   ++  AL++   ++Q  L  +  T            +FN    ++
Sbjct: 165 SIVVYNVLIHGLCKSRRIWEALEIKNCLMQKGLEANVVTYYG---------KFNEAELLF 215

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
             +    L  N  T+  +I    +  + D+A   LD + + ++  T   YN+++ GY + 
Sbjct: 216 KEMGEKGLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPYNSLINGYCKL 275

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKYYEQLKSAGGQITKYVF 186
            +   A     EM    + P   T++ LI    NE +     K Y ++ + G     Y F
Sbjct: 276 GNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTF 335

Query: 187 MALINAYTTCGEFEKARQVVLDAEIPVKS--RSEVK-SALVSALASHGRTSDAIIVYEEI 243
            A+I+    C     A  + L  E+  +    SEV  + ++      G  S+A  + +E+
Sbjct: 336 TAIISG--LCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEM 393

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL---HC--VRF 298
              G   +      LI  L S G ++   + ++++H   + ++  C   L   +C   RF
Sbjct: 394 VGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYCKEGRF 453

Query: 299 KQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLP 358
           K   SA  ++ +         +AM+     I     T    D +    LL+ + +  GL 
Sbjct: 454 KDAVSACRVMVE-------RGVAMDLVCYAILID-GTAREHDTRALFGLLKEMHNH-GLR 504

Query: 359 PSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKL 418
           P       ++     A +LK A  +W    + G   NV++Y  +      +G    A +L
Sbjct: 505 PDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAGLMDKA-EL 563

Query: 419 LSK 421
           LSK
Sbjct: 564 LSK 566



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 115/281 (40%), Gaps = 32/281 (11%)

Query: 29  VALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
           ++L+    M    L+P   T++++L+       FN V  ++  I   N++P+   + +++
Sbjct: 79  LSLNDSRLMKDCNLMPEVRTLSALLNGLLRFRRFNDVLLLFDDIVSANVQPDIYIYSAVV 138

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGAL------------ 136
               ++KDF+ A  ++  ++      +  +YN ++ G  + + +  AL            
Sbjct: 139 RSLCELKDFNKAKEMIHWMEFNQCKLSIVVYNVLIHGLCKSRRIWEALEIKNCLMQKGLE 198

Query: 137 --------------MVLKEMEQANVKPDSQTFSYLIHN-CSNEE--DIIKYYEQLKSAGG 179
                         ++ KEM +  +  +  T+S LI + C   E  + I + +++  A  
Sbjct: 199 ANVVTYYGKFNEAELLFKEMGEKGLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKASI 258

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEV--KSALVSALASHGRTSDAI 237
           + T Y + +LIN Y   G    A +   D  I       V   ++L+S   + G    A 
Sbjct: 259 EFTVYPYNSLINGYCKLGN-ASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAF 317

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            VY E+   G +       A+I  L     +   I+L  E+
Sbjct: 318 KVYNEMTAKGISPNTYTFTAIISGLCRANMMAEAIRLFGEM 358



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 88/407 (21%), Positives = 154/407 (37%), Gaps = 70/407 (17%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA------CEES 59
           +I PS  +Y  +I   C    +  A  ++++MV    VP T T   ++          E+
Sbjct: 362 KIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEA 421

Query: 60  YEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMY 119
            EF  V  ++    HH L  N+  + +++    K   F  A S    + E  +      Y
Sbjct: 422 KEF--VDDLHKD--HHKL--NNMCYSALVHGYCKEGRFKDAVSACRVMVERGVAMDLVCY 475

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS---NEEDIIKYYEQLKS 176
             ++ G  R+ D +    +LKEM    ++PD+  ++ +I   S   N ++    ++ +  
Sbjct: 476 AILIDGTAREHDTRALFGLLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVD 535

Query: 177 AGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDA 236
            G       + ALIN     G  +KA  +              K  LVS +  +      
Sbjct: 536 EGCLPNVVTYTALINGLCKAGLMDKAELL-------------SKETLVSDVTPNH----- 577

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQL--------LEEVHDPDYWMDGC 288
            I Y      GC          ++HL   G + + +QL        L      +  + G 
Sbjct: 578 -ITY------GC---------FLDHLTRGGNMEKAVQLHHAMLKGFLATTVSYNILIRGF 621

Query: 289 CRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLL 348
           CRL        ++  AT LL  + D   +D +     +S I  +       ++Q  + L 
Sbjct: 622 CRL-------GKIEEATKLLHGMTD---NDILPDYITYSTIIYE--QCKRSNLQEAIKLW 669

Query: 349 QFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYN 395
             + D+ GL P      FL+  C  A +L++A  +  E    G+  N
Sbjct: 670 HTMLDK-GLKPDTLAYSFLVHGCCIAGELEKAFELRDEMIRRGMRSN 715


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 140/319 (43%), Gaps = 28/319 (8%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  LI   C + ++  AL  + +MV     P   T  +++HA       +  R+    +
Sbjct: 13  TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEM 72

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
            + NL PN  T+  +I    K    D A +LL  +++   +PTA  YN++++G  + +  
Sbjct: 73  ANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRK-KCVPTAVTYNSLISGLCKAERA 131

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYVFMAL 189
             A  +L+EM  +   PD  T++ LI   C ++  +D ++ +EQL + G +     +  L
Sbjct: 132 SEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCL 191

Query: 190 INAYTTCGEFEKA-----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           I+     G  ++A     R +   + +P    +   ++L+S     G+  +A+ + E + 
Sbjct: 192 IDGLCKEGRLKEAIDLFGRMIKSGSCMP---NTVTYNSLISGFCRMGKMDEAMNLLERMA 248

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDY-----WMDGCCRLILHC 295
           E G + +      L+        L+    LL ++      PD       MDG C      
Sbjct: 249 ETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLC------ 302

Query: 296 VRFKQLSSATDLLKQLKDK 314
            R  +LS A  +L +++ K
Sbjct: 303 -RENRLSDAVHILGEMRRK 320



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 90/455 (19%), Positives = 172/455 (37%), Gaps = 52/455 (11%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVRR 67
           P   +Y  +I   C   ++H A   +E+M    L P+  T   ++   C+       V  
Sbjct: 44  PDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVAL 103

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +  M       P + T+ S+IS   K +    AY LL+++     +P    Y  ++ G+ 
Sbjct: 104 LSKM--RKKCVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFC 161

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE----EDIIKYYEQLKSAGGQITK 183
           + K    AL V +++     +PD  T+S LI     E    E I  +   +KS       
Sbjct: 162 KSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNT 221

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             + +LI+ +   G+ ++A  ++   AE          + L++      R  DA  +  +
Sbjct: 222 VTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQ 281

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEE---------VHDPDYWMDGCCR--- 290
           +   G   +     +L++ L  E  L+  + +L E         V+  +  +DG CR   
Sbjct: 282 MTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQ 341

Query: 291 -----------------------LILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFS 327
                                  +I    +  + S A +L+++ + +  + ++ M     
Sbjct: 342 LEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVI 401

Query: 328 EIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEY 387
           +  C+    D         + + + +E G  P+      L+    NA  L RA    + Y
Sbjct: 402 DGLCREKKVDE-----ACRVYRKMLEEPGCLPNSITYSTLITGLCNAGMLDRA----RGY 452

Query: 388 ENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
              G   N+ +Y  +  AF  +   + A +LL  M
Sbjct: 453 IEKGCVPNIGTYNLLIDAFRKANRDEDARELLDDM 487



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 89/209 (42%), Gaps = 16/209 (7%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           +TP   ++  L+   C   ++  A+ ++ +M +    P+  T N+IL     + +    R
Sbjct: 287 LTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEAR 346

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +   M+   +  PN  +F  MI    K+     A  L+++ +     P   MY  ++ G 
Sbjct: 347 KF--MLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGL 404

Query: 127 FRKKDVQGALMVLKEM-EQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK-- 183
            R+K V  A  V ++M E+    P+S T+S LI    N          L  A G I K  
Sbjct: 405 CREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNA-------GMLDRARGYIEKGC 457

Query: 184 ----YVFMALINAYTTCGEFEKARQVVLD 208
                 +  LI+A+      E AR+++ D
Sbjct: 458 VPNIGTYNLLIDAFRKANRDEDARELLDD 486



 Score = 42.4 bits (98), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 72/369 (19%), Positives = 136/369 (36%), Gaps = 20/369 (5%)

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
           M+  ++   +  T+ S+I    K+K  + A   L  +      P    Y A++     + 
Sbjct: 1   MVATNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVEN 60

Query: 131 DVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSN---EEDIIKYYEQLKSAGGQITKY-- 184
            +  A   L+EM   N+ P+  T++ LI   C     +E +    +  K        Y  
Sbjct: 61  RLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNS 120

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +   L  A      ++   ++V    IP        + L++      ++ DA+ V+E++ 
Sbjct: 121 LISGLCKAERASEAYDLLEEMVYSGCIP---DIFTYTTLITGFCKSKKSDDALRVFEQLV 177

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC---RLILHCVRFKQL 301
             G   +      LI+ L  EG L   I L   +      M        LI    R  ++
Sbjct: 178 ARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKM 237

Query: 302 SSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSR 361
             A +LL+++ +     ++         FC++A  D        DLL  +  + GL P  
Sbjct: 238 DEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDD-----AYDLLNQMTRK-GLTPDV 291

Query: 362 KCLDFLL-GACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420
                L+ G C   R     H++ +    +  P  V +Y  +   +  +   + A K + 
Sbjct: 292 VTFTSLMDGLCRENRLSDAVHILGEMRRKSCSP-TVYTYNTILDGYCRANQLEEARKFML 350

Query: 421 KMPKDDPHV 429
           +     P+V
Sbjct: 351 EEMDCPPNV 359


>gi|449435168|ref|XP_004135367.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Cucumis sativus]
          Length = 962

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 163/348 (46%), Gaps = 17/348 (4%)

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
           H  +K N +T+  +I+  +K+KD+ +A+++ +DL +  + P   +YN I+  +     + 
Sbjct: 514 HAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMD 573

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALI 190
            A+  +KEM++   KP ++TF  +IH  + + ++ K    ++ ++ +G   T + + ALI
Sbjct: 574 RAVCTVKEMQKQRHKPTTRTFMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALI 633

Query: 191 NAYTTCGEFEKARQVVLDAEIPVKSRSE-VKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
                  + EKA Q++ +  +   S +E   + ++   AS G T  A   + ++++ G  
Sbjct: 634 LGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFTYFTKLRDEGLQ 693

Query: 250 LEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL--HCVRFKQLSSATDL 307
           L+     AL++     G +   + + +E+   +   +     IL     R   +  A DL
Sbjct: 694 LDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDIWEAADL 753

Query: 308 LKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFL 367
           ++Q+    K + +  + H    F   A +   D+Q     ++ +K  +G+ P+ K    L
Sbjct: 754 MQQM----KREGVQPDIHTYTSFIN-ACSKAGDMQRATKTIEEMKS-VGVKPNVKTYTTL 807

Query: 368 LGACVNARDLKRAHLIWKEYENAGLP-----YNVLSYLWMYKAFLASG 410
           +     A   ++A   ++E + +GL      Y+ L    + +A +A G
Sbjct: 808 INGWARASLPEKALSCFEEMKLSGLKPDRAVYHCLMTSLLSRATVAHG 855



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 119/289 (41%), Gaps = 42/289 (14%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P    Y  +IT  C + K+  A+  V++M +    P+T T   I+H      E     
Sbjct: 552 IKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMPIIHGFARKGEMKKAL 611

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++ M+      P   T+ ++I   V+ +  + A  +LD++    + P    Y  IM GY
Sbjct: 612 DVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGY 671

Query: 127 FRKKD-----------------------------------VQGALMVLKEMEQANVKPDS 151
               D                                   +Q AL V KEM   N+  ++
Sbjct: 672 ASLGDTGKAFTYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNT 731

Query: 152 QTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
             ++ LI   +   DI +     +Q+K  G Q   + + + INA +  G+ ++A + + +
Sbjct: 732 FIYNILIDGWARRGDIWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATKTIEE 791

Query: 209 AE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP-RAV 255
            + + VK   +  + L++  A       A+  +EE+K +G  L+P RAV
Sbjct: 792 MKSVGVKPNVKTYTTLINGWARASLPEKALSCFEEMKLSG--LKPDRAV 838



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 92/482 (19%), Positives = 186/482 (38%), Gaps = 69/482 (14%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           PS   Y  ++ Y      +H A +  E+M    + PS+    +++HA     +       
Sbjct: 309 PSRKEYGLMVNYYTRRGDMHRARETFEKMRARGIEPSSHVYTNLIHAYAVGRDMEEALSC 368

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    ++ +  T+  ++S   K  + +SA     + KE +    A +Y  I+  Y +
Sbjct: 369 VRKMKEEGIEMSLVTYSILVSGFAKTGNAESADHWFQEAKEKHSSLNAIIYGNIIYAYCQ 428

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYV 185
           + ++  A  +++EME+  +      +  ++       +E+  +  +E+ K  G   +   
Sbjct: 429 RCNMDKAEALVREMEEEGIDAPIDIYHTMMDGYTMVGDEDKCLLVFERFKECGLNPSVIT 488

Query: 186 FMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +  LIN Y   G+  KA +V  + E   +K   +  S L++        ++A  ++E++ 
Sbjct: 489 YGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDLI 548

Query: 245 EAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEV----HDPD---------------- 282
           + G  ++P  V+   +I      G+++R +  ++E+    H P                 
Sbjct: 549 KDG--IKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMPIIHGFARKGE 606

Query: 283 ----------YWMDGCC-------RLILHCVRFKQLSSATDLLKQLKDKFKDDEMAM--- 322
                       M GC         LIL  V  +++  A  +L         DEM +   
Sbjct: 607 MKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQIL---------DEMTLAGV 657

Query: 323 ---EYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKR 379
              E+ ++ I    A+    D          ++DE GL       + LL AC  +  ++ 
Sbjct: 658 SPNEHTYTTIMHGYASLG--DTGKAFTYFTKLRDE-GLQLDVYTYEALLKACCKSGRMQS 714

Query: 380 AHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQACKQT 439
           A  + KE     +P N   Y  +   +   G+   A+ L+ +M ++       +Q    T
Sbjct: 715 ALAVTKEMSAQNIPRNTFIYNILIDGWARRGDIWEAADLMQQMKREG------VQPDIHT 768

Query: 440 YT 441
           YT
Sbjct: 769 YT 770



 Score = 42.0 bits (97), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 6/130 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A D+++QM +  + P   T  S ++AC ++ +     +    +    +KPN +T+ ++I+
Sbjct: 750 AADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLIN 809

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ------GALMVLKEME 143
              +    + A S  +++K   L P  ++Y+ +M     +  V       G L V +EM 
Sbjct: 810 GWARASLPEKALSCFEEMKLSGLKPDRAVYHCLMTSLLSRATVAHGCIYPGILSVCREMV 869

Query: 144 QANVKPDSQT 153
              +  D  T
Sbjct: 870 DCELTVDMGT 879


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/296 (20%), Positives = 127/296 (42%), Gaps = 39/296 (13%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++ P+  +Y +LI   C    +  A+ ++ +MV+ +L P   T N+++H   E    +  
Sbjct: 390 KVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSA 449

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNL------------- 112
            R++ ++      P+  TF + +    ++     A+ +L+ LKE ++             
Sbjct: 450 SRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDG 509

Query: 113 ----------------------MPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD 150
                                 +P +  +N ++ G  ++  VQ A++++++M + +VKP 
Sbjct: 510 YCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPT 569

Query: 151 SQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKYVFMALINAYTTCGEFEKARQVVL 207
             T++ L+     E D  +  E   +L S+G Q     + A I AY + G  E+A ++V+
Sbjct: 570 LHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVI 629

Query: 208 DAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
             +   V   S + + L++A    G    A  V   +   GC         L++HL
Sbjct: 630 KIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYSILMKHL 685



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 119/277 (42%), Gaps = 12/277 (4%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVRRI 68
           ++ SY  LI   C+  K+H AL+   +M +    P+  T   ++ A CE   E   +  +
Sbjct: 254 NAVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEAL-SL 312

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +     +PN  T+  +I    K    D A  +L+++ E  + P+   +NA++  Y +
Sbjct: 313 FGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCK 372

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQL-KSAGGQITKYV-- 185
           +  ++ A+ VL  ME   V P+ +T++ LI      + + +    L K    +++  V  
Sbjct: 373 RGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVT 432

Query: 186 FMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
           +  LI+     G  + A    R ++ D   P        +A +  L   GR  +A  + E
Sbjct: 433 YNTLIHGLCEVGVVDSASRLFRLMIRDGFSP---DQWTFNAFMVCLCRMGRVGEAHQILE 489

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            +KE        A  ALI+     G++     L + +
Sbjct: 490 SLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRM 526



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/280 (19%), Positives = 120/280 (42%), Gaps = 8/280 (2%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSIL-HACEESYEFNLVRR 67
           P+  +Y  L+   C+  +   AL +  +M +    P+  T   ++ + C+E      ++ 
Sbjct: 288 PTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKM 347

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +  M+    + P+   F ++I    K    + A  +L  ++   + P    YN ++ G+ 
Sbjct: 348 LNEMV-EKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFC 406

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII----KYYEQLKSAGGQITK 183
           R K +  A+ +L +M ++ + PD  T++ LIH    E  ++    + +  +   G    +
Sbjct: 407 RGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLC-EVGVVDSASRLFRLMIRDGFSPDQ 465

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           + F A +      G   +A Q++    E  VK+     +AL+      G+   A  +++ 
Sbjct: 466 WTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKR 525

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPD 282
           +    C         +I+ L  EG++   + L+E++   D
Sbjct: 526 MLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFD 565


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 115/265 (43%), Gaps = 4/265 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
            +PS  +Y  +I   C   K+  A  ++++MV   + P+  T N ++            +
Sbjct: 260 FSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAK 319

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++  +    L+PN  T+ S+I+        D A  L D +  M L P    YNA++ G+
Sbjct: 320 KVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGF 379

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITK 183
            +KK ++ A  +L ++ +  + P+  TF+ LI         +D       +   G     
Sbjct: 380 CKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNV 439

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             +  LI  +   G  ++AR++  + E   +K+     + LV AL   G T  A+ + +E
Sbjct: 440 STYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDE 499

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGE 267
           + E G N       ALI+    EG 
Sbjct: 500 MFEVGLNPSHLTYNALIDGYFREGN 524



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 82/388 (21%), Positives = 163/388 (42%), Gaps = 20/388 (5%)

Query: 45  STETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLL 104
           S  + N +L +  +     +V  +Y  +    +  N  TF  +I+   K+  F  A  ++
Sbjct: 193 SALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVV 252

Query: 105 DDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE 164
           +D+K     P+   YN I+ GY +   +  A  +LKEM    + P+  TF+ LI     +
Sbjct: 253 EDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRD 312

Query: 165 EDII---KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVK 220
           E++    K +E+++  G Q     + +LIN   + G+ ++A  +    + + +K      
Sbjct: 313 ENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTY 372

Query: 221 SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEV 278
           +AL++         +A  + ++I + G  L P  +    LI+     G ++    L   +
Sbjct: 373 NALINGFCKKKMLKEAREMLDDIGKRG--LAPNVITFNTLIDAYGKAGRMDDAFLLRSMM 430

Query: 279 HD----PDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIA 334
            D    P+     C  LI+   R   +  A  L K+++      ++       +  C+  
Sbjct: 431 LDTGVCPNVSTYNC--LIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKG 488

Query: 335 TTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPY 394
            T    V++  ++      E+GL PS    + L+       +   A  +    E  G   
Sbjct: 489 ETRKA-VRLLDEMF-----EVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRA 542

Query: 395 NVLSYLWMYKAFLASGNRKSASKLLSKM 422
           N+++Y  + K F   G  + A++LL++M
Sbjct: 543 NIVTYNVLIKGFCNKGKLEEANRLLNEM 570



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 107/245 (43%), Gaps = 4/245 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  LI   C   K+  AL + ++M    L P+  T N++++   +       R
Sbjct: 330 LQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAR 389

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   I    L PN  TF ++I    K    D A+ L   + +  + P  S YN ++ G+
Sbjct: 390 EMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGF 449

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE--DIIKYYEQLKSAGGQITK 183
            R+ +V+ A  + KEME   +K D  T++ L+   C   E    ++  +++   G   + 
Sbjct: 450 CREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSH 509

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEE 242
             + ALI+ Y   G    A  V    E   +  + V  + L+    + G+  +A  +  E
Sbjct: 510 LTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNE 569

Query: 243 IKEAG 247
           + E G
Sbjct: 570 MLEKG 574



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 121/282 (42%), Gaps = 10/282 (3%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNL 64
            I  +  ++  +I   C + K   A DVVE M      PS  T N+I+   C+    F  
Sbjct: 224 RIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKA 283

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
              +  M+    + PN  TF  +I    + ++  +A  + ++++   L P    YN+++ 
Sbjct: 284 DALLKEMVAKR-IHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLIN 342

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQI--- 181
           G      +  AL +  +M    +KP+  T++ LI+    ++ + +  E L   G +    
Sbjct: 343 GLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAP 402

Query: 182 TKYVFMALINAYTTCGEFEKA---RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAII 238
               F  LI+AY   G  + A   R ++LD    V       + L+      G   +A  
Sbjct: 403 NVITFNTLIDAYGKAGRMDDAFLLRSMMLDT--GVCPNVSTYNCLIVGFCREGNVKEARK 460

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           + +E++  G   +      L++ L  +GE  + ++LL+E+ +
Sbjct: 461 LAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFE 502



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 122/277 (44%), Gaps = 4/277 (1%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
            I P+  ++  LI   C    V  A  V E+M +  L P+  T NS+++    + + +  
Sbjct: 294 RIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEA 353

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +   +    LKPN  T+ ++I+   K K    A  +LDD+ +  L P    +N ++  
Sbjct: 354 LGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDA 413

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQIT 182
           Y +   +  A ++   M    V P+  T++ LI     E ++    K  ++++  G +  
Sbjct: 414 YGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKAD 473

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
              +  L++A    GE  KA +++ +  E+ +       +AL+      G ++ A+ V  
Sbjct: 474 LVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRT 533

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            +++ G          LI+   ++G+L    +LL E+
Sbjct: 534 LMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEM 570


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/286 (20%), Positives = 127/286 (44%), Gaps = 9/286 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I+P   +Y  LI+  C L K++ A+ +  +M+  E+ P   T + ++    +       +
Sbjct: 227 ISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAK 286

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +  M+    +KP+  T+ S++     +K  + A S+ + + +  +      YN ++ G+
Sbjct: 287 NVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGF 346

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITK 183
            + K V  A+ + KEM   N+ PD  T++ LI        I   +K  +++   G    K
Sbjct: 347 CKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDK 406

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             + ++++A     + +KA  ++    +  ++      + L+  L   GR  DA  ++E+
Sbjct: 407 ITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFED 466

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC 288
           +   G N+       +I+        ++ + LL ++ D     +GC
Sbjct: 467 LLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMED-----NGC 507



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 91/206 (44%), Gaps = 3/206 (1%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           EI P   ++  L+   C   +V  A +V+  M++  + P   T  S++       + N  
Sbjct: 261 EINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKA 320

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           + I+  +    +  N +++  MI+   KIK  D A +L  ++   N++P    YN+++ G
Sbjct: 321 KSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDG 380

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE--DIIKYYEQLKSAGGQIT 182
             +   +  AL ++ EM    V  D  T++ ++   C N +    I    ++K  G Q  
Sbjct: 381 LCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPD 440

Query: 183 KYVFMALINAYTTCGEFEKARQVVLD 208
            Y +  LI+     G  + A+ +  D
Sbjct: 441 MYTYTILIDGLCKGGRLKDAQNIFED 466



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 91/426 (21%), Positives = 173/426 (40%), Gaps = 59/426 (13%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGEL----VPSTETINSILHACEESYEFNL 64
           P++ +   LI   C   ++H AL   +++V        V     IN +    + S    L
Sbjct: 124 PNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQL 183

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
           +RR+   +    ++PN   + ++I    K+K  + A+ L  ++    + P    Y+A+++
Sbjct: 184 LRRVDGKL----VQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALIS 239

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK- 183
           G+     +  A+ +  +M    + PD  TFS L+     E  + +    L     Q  K 
Sbjct: 240 GFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKP 299

Query: 184 --YVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
               + +L++ Y    +  KA+ +    A+  V +  +  + +++      +  +A+ ++
Sbjct: 300 DVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLF 359

Query: 241 EEIKEAGC-NLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVR 297
              KE  C N+ P  V   +LI+ L   G+++  ++L++E+HD         R + H   
Sbjct: 360 ---KEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHD---------RGVPH--- 404

Query: 298 FKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGL 357
                          DK   + +       +  C+    D       + LL  +KDE G+
Sbjct: 405 ---------------DKITYNSIL------DALCKNHQVDK-----AIALLTKMKDE-GI 437

Query: 358 PPSRKCLDFLL-GACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSAS 416
            P       L+ G C   R LK A  I+++    G    V +Y  M + F  +     A 
Sbjct: 438 QPDMYTYTILIDGLCKGGR-LKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKAL 496

Query: 417 KLLSKM 422
            LLSKM
Sbjct: 497 ALLSKM 502


>gi|414868297|tpg|DAA46854.1| TPA: hypothetical protein ZEAMMB73_384018 [Zea mays]
          Length = 504

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 99/203 (48%), Gaps = 4/203 (1%)

Query: 10  SSASYKKLITYSC-DLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           ++AS+  LI   C D   +   L + E+M +  LVP+  T N+I+H   +    +  RRI
Sbjct: 245 TAASFNTLIAAYCHDSGGMETVLRLKERMEREGLVPNEVTYNTIVHGLCKEGRMHQARRI 304

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    + PN+ TF ++I   V + D + A  + +++ +  L      YNA++ G   
Sbjct: 305 VNEMRVKGVTPNTITFNTLIHSYVTLGDNEVAMKMHEEMMKAGLSADLVTYNALILGLCN 364

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYL-IHNC--SNEEDIIKYYEQLKSAGGQITKYV 185
           +     A  +++E+  A ++P++ TFS L I  C   N E  +     +K AG Q   Y 
Sbjct: 365 EGKTWKASQLVQELCAAKLEPNASTFSALIIGQCKKQNPERALDLLNAMKKAGFQPNYYT 424

Query: 186 FMALINAYTTCGEFEKARQVVLD 208
           +  LI+ ++   +FE A  V+ D
Sbjct: 425 YSILISTFSKNKDFEGAIDVLKD 447



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 75/145 (51%), Gaps = 2/145 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINS-ILHACEESYEFNLV 65
           +TP++ ++  LI     L    VA+ + E+M++  L     T N+ IL  C E   +   
Sbjct: 313 VTPNTITFNTLIHSYVTLGDNEVAMKMHEEMMKAGLSADLVTYNALILGLCNEGKTWK-A 371

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            ++   +C   L+PN+ TF ++I    K ++ + A  LL+ +K+    P    Y+ +++ 
Sbjct: 372 SQLVQELCAAKLEPNASTFSALIIGQCKKQNPERALDLLNAMKKAGFQPNYYTYSILIST 431

Query: 126 YFRKKDVQGALMVLKEMEQANVKPD 150
           + + KD +GA+ VLK+M    + PD
Sbjct: 432 FSKNKDFEGAIDVLKDMLMRCIAPD 456



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 82/169 (48%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  ++   C   ++H A  +V +M    + P+T T N+++H+     +  +  
Sbjct: 278 LVPNEVTYNTIVHGLCKEGRMHQARRIVNEMRVKGVTPNTITFNTLIHSYVTLGDNEVAM 337

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++  +    L  +  T+ ++I           A  L+ +L    L P AS ++A++ G 
Sbjct: 338 KMHEEMMKAGLSADLVTYNALILGLCNEGKTWKASQLVQELCAAKLEPNASTFSALIIGQ 397

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK 175
            +K++ + AL +L  M++A  +P+  T+S LI   S  +D     + LK
Sbjct: 398 CKKQNPERALDLLNAMKKAGFQPNYYTYSILISTFSKNKDFEGAIDVLK 446



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/245 (19%), Positives = 108/245 (44%), Gaps = 8/245 (3%)

Query: 39  QGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFD 98
           +  +VP+   I+ +  +C    + +     Y  +  H + P  E+    IS  ++++  +
Sbjct: 137 RAAVVPA---IDVLFSSCARDKKLSWATLTYRAMRAHGMFPTVESCNVFISGALRLRRPE 193

Query: 99  SAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            A S   +++   + P     N +M        V  A  +L EM        + +F+ LI
Sbjct: 194 IAISFFREMRRCRVSPNVYTVNMVMRAKCALGRVVDAAQLLDEMPCWGFSRTAASFNTLI 253

Query: 159 ----HNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIP-V 213
               H+    E +++  E+++  G    +  +  +++     G   +AR++V +  +  V
Sbjct: 254 AAYCHDSGGMETVLRLKERMEREGLVPNEVTYNTIVHGLCKEGRMHQARRIVNEMRVKGV 313

Query: 214 KSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQ 273
              +   + L+ +  + G    A+ ++EE+ +AG + +     ALI  L +EG+  +  Q
Sbjct: 314 TPNTITFNTLIHSYVTLGDNEVAMKMHEEMMKAGLSADLVTYNALILGLCNEGKTWKASQ 373

Query: 274 LLEEV 278
           L++E+
Sbjct: 374 LVQEL 378


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 140/319 (43%), Gaps = 28/319 (8%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  LI   C + ++  AL  + +MV     P   T  +++HA       +  R+    +
Sbjct: 13  TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEM 72

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
            + NL PN  T+  +I    K    D A +LL  +++   +PTA  YN++++G  + +  
Sbjct: 73  ANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRK-KCVPTAVTYNSLISGLCKAERA 131

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYVFMAL 189
             A  +L+EM  +   PD  T++ LI   C ++  +D ++ +EQL + G +     +  L
Sbjct: 132 SEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCL 191

Query: 190 INAYTTCGEFEKA-----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           I+     G  ++A     R +   + +P    +   ++L+S     G+  +A+ + E + 
Sbjct: 192 IDGLCKEGRLKEAIDLFGRMIKSGSCMP---NTVTYNSLISGFCRMGKMDEAMNLLERMA 248

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDY-----WMDGCCRLILHC 295
           E G + +      L+        L+    LL ++      PD       MDG C      
Sbjct: 249 ETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLC------ 302

Query: 296 VRFKQLSSATDLLKQLKDK 314
            R  +LS A  +L +++ K
Sbjct: 303 -RENRLSDAVHILGEMRRK 320



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 90/455 (19%), Positives = 172/455 (37%), Gaps = 52/455 (11%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVRR 67
           P   +Y  +I   C   ++H A   +E+M    L P+  T   ++   C+       V  
Sbjct: 44  PDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVAL 103

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +  M       P + T+ S+IS   K +    AY LL+++     +P    Y  ++ G+ 
Sbjct: 104 LSKM--RKKCVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFC 161

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE----EDIIKYYEQLKSAGGQITK 183
           + K    AL V +++     +PD  T+S LI     E    E I  +   +KS       
Sbjct: 162 KSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNT 221

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             + +LI+ +   G+ ++A  ++   AE          + L++      R  DA  +  +
Sbjct: 222 VTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQ 281

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEE---------VHDPDYWMDGCCR--- 290
           +   G   +     +L++ L  E  L+  + +L E         V+  +  +DG CR   
Sbjct: 282 MTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQ 341

Query: 291 -----------------------LILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFS 327
                                  +I    +  + S A +L+++ + +  + ++ M     
Sbjct: 342 LEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVI 401

Query: 328 EIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEY 387
           +  C+    D         + + + +E G  P+      L+    NA  L RA    + Y
Sbjct: 402 DGLCREKKVDE-----ACRVYRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRA----RGY 452

Query: 388 ENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
              G   N+ +Y  +  AF  +   + A +LL  M
Sbjct: 453 IEKGCVPNIGTYNLLIDAFRKANRDEDARELLDDM 487



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 89/209 (42%), Gaps = 16/209 (7%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           +TP   ++  L+   C   ++  A+ ++ +M +    P+  T N+IL     + +    R
Sbjct: 287 LTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEAR 346

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +   M+   +  PN  +F  MI    K+     A  L+++ +     P   MY  ++ G 
Sbjct: 347 KF--MLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGL 404

Query: 127 FRKKDVQGALMVLKEM-EQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK-- 183
            R+K V  A  V ++M E+    P+S T+S L+    N          L  A G I K  
Sbjct: 405 CREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNA-------GMLDRARGYIEKGC 457

Query: 184 ----YVFMALINAYTTCGEFEKARQVVLD 208
                 +  LI+A+      E AR+++ D
Sbjct: 458 VPNIGTYNLLIDAFRKANRDEDARELLDD 486



 Score = 42.4 bits (98), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 72/369 (19%), Positives = 136/369 (36%), Gaps = 20/369 (5%)

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
           M+  ++   +  T+ S+I    K+K  + A   L  +      P    Y A++     + 
Sbjct: 1   MVATNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVEN 60

Query: 131 DVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSN---EEDIIKYYEQLKSAGGQITKY-- 184
            +  A   L+EM   N+ P+  T++ LI   C     +E +    +  K        Y  
Sbjct: 61  RLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNS 120

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +   L  A      ++   ++V    IP        + L++      ++ DA+ V+E++ 
Sbjct: 121 LISGLCKAERASEAYDLLEEMVYSGCIP---DIFTYTTLITGFCKSKKSDDALRVFEQLV 177

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC---RLILHCVRFKQL 301
             G   +      LI+ L  EG L   I L   +      M        LI    R  ++
Sbjct: 178 ARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKM 237

Query: 302 SSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSR 361
             A +LL+++ +     ++         FC++A  D        DLL  +  + GL P  
Sbjct: 238 DEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDD-----AYDLLNQMTRK-GLTPDV 291

Query: 362 KCLDFLL-GACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420
                L+ G C   R     H++ +    +  P  V +Y  +   +  +   + A K + 
Sbjct: 292 VTFTSLMDGLCRENRLSDAVHILGEMRRKSCSP-TVYTYNTILDGYCRANQLEEARKFML 350

Query: 421 KMPKDDPHV 429
           +     P+V
Sbjct: 351 EEMDCPPNV 359


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 126/272 (46%), Gaps = 17/272 (6%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +I+    +     A+ +  +M++    P+  ++ S+L AC E  +  L   +   +
Sbjct: 195 SWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFV 254

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
             + +  N     ++I +  K  D  SA  + D +K+ + +     +NA++ GY +    
Sbjct: 255 VENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVT----WNAMITGYAQNGMS 310

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSN--EEDIIKYYEQLKSAGG-QITKYVFMAL 189
           + A+ + ++M  ++  PD  T   ++  C++    D+ K  E   S  G Q   YV  AL
Sbjct: 311 EEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTAL 370

Query: 190 INAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGC 248
           ++ Y  CG  + A +V       + +++EV  +A++SALA HG+  +A+ +++ +   G 
Sbjct: 371 VDMYAKCGSLDNAFRVFYG----MPNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGG 426

Query: 249 NLEPR-----AVIALIEHLNSEGELNRLIQLL 275
            + P       V++   H     E  RL  ++
Sbjct: 427 TVSPNDITFVGVLSACVHAGLVDEGRRLFHMM 458



 Score = 44.7 bits (104), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 105/234 (44%), Gaps = 29/234 (12%)

Query: 46  TETINSILHACEESYEFNLVRRIYPMICHHNL-KPNSETFRSMISLNVKIKDFDSAYSLL 104
           ++  NS+L  C        +++I+  +  +++ KPNS  ++        +KDF  A    
Sbjct: 32  SDKFNSLLQQC---LSIKQLKQIHAQLLTNSIHKPNSFLYKI-----ADLKDFAYASVFF 83

Query: 105 DDLKEMNLMPTASMYNAIMAGY---FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC 161
            ++    L PT   +N ++ G    + K  +  AL     M+   +KP++ T+ +L   C
Sbjct: 84  SNI----LDPTEYSFNVMIRGLSTAWNKSSL--ALEFYSRMKFLGLKPNNLTYPFLFIAC 137

Query: 162 SN----EEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRS 217
           SN    E   + +   ++  G     +V  +LI  Y  CG+   AR+V    EI  K   
Sbjct: 138 SNLLAVENGRMGHCSVIRR-GLDEDGHVSHSLITMYARCGKMGDARKVF--DEISQKDLV 194

Query: 218 EVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRL 271
              S ++S  +      +A+ ++ E+ EAG   +P   ++L+  L + GEL  L
Sbjct: 195 SWNS-MISGYSKMRHAGEAVGLFREMMEAG--FQPNE-MSLVSVLGACGELGDL 244


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 140/329 (42%), Gaps = 30/329 (9%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           KL   P +A++  L+   C + K+  ALDV ++MV     P+  T  ++++   +  +  
Sbjct: 119 KLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLT 178

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               ++  +    + P+  T+ S+I     + ++    +LL+++ +  +MP     N ++
Sbjct: 179 EALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVV 238

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI-HNC--SNEEDIIKYYEQLKSAGGQ 180
               ++  V  A  V+  M Q  V+PD  T++ L+  +C  S  ++ +K ++ +   G  
Sbjct: 239 DALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCV 298

Query: 181 ITKYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDA 236
                +  LIN Y      +KA     ++     IP    +   S L+  L   GR  DA
Sbjct: 299 CNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIP---NTMTYSTLIHGLCHVGRLQDA 355

Query: 237 IIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVH----DPDYW-----M 285
           I ++ E+    C   P  V    L+++L     L   + LL+ +     DPD       +
Sbjct: 356 IALFNEM--VACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAI 413

Query: 286 DGCCRLILHCVRFKQLSSATDLLKQLKDK 314
           DG CR          L +A DL   L  +
Sbjct: 414 DGMCRA-------GDLEAARDLFSNLAPR 435



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 119/280 (42%), Gaps = 4/280 (1%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
            K +I P+  S   ++   C   KV  A DVV+ M+QG + P   T  +++       E 
Sbjct: 223 VKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEM 282

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           +   +++ M+  +    N  ++ ++I+   KI+  D A  L +++    L+P    Y+ +
Sbjct: 283 DEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTL 342

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQIT 182
           + G      +Q A+ +  EM      P+  T+S L+        + +    LK+  G   
Sbjct: 343 IHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNL 402

Query: 183 K---YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAII 238
                V+   I+     G+ E AR +  + A   ++      + ++  L   G   +A  
Sbjct: 403 DPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASK 462

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           ++ E+ E GC         + + L    + +R IQLLEE+
Sbjct: 463 LFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQLLEEM 502



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/275 (18%), Positives = 117/275 (42%), Gaps = 4/275 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  L+   C   ++  A+ V + MV+   V +  + N++++   +    +   
Sbjct: 262 VEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAM 321

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +C   L PN+ T+ ++I     +     A +L +++     +P    Y+ ++   
Sbjct: 322 YLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYL 381

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITK 183
            +   +  A+ +LK +E +N+ PD Q ++  I       D+      +  L   G Q   
Sbjct: 382 CKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDV 441

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEE 242
           +    +I      G  ++A ++  + +     R+    + +   L  + +TS AI + EE
Sbjct: 442 WTHNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQLLEE 501

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEE 277
           +   G + +      L++ L+ +G    + Q+L E
Sbjct: 502 MLARGFSADVSTTALLVKMLSDDGLDQSVKQILCE 536


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 98/206 (47%), Gaps = 3/206 (1%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  + P +  Y  +I+  C L  V  A  + ++M + ++VP   T  S++H   +S +  
Sbjct: 340 KWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMV 399

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             R ++  +    L+P+  T+ ++I    K  +   A+S+ + + +  L P    Y A+ 
Sbjct: 400 EAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALA 459

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQ 180
            G  +  ++  A  +L EM +  ++P+  T++ +++      N E  +K  E++  AG  
Sbjct: 460 DGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFY 519

Query: 181 ITKYVFMALINAYTTCGEFEKARQVV 206
                +  L++AY   GE  KA +++
Sbjct: 520 PDTITYTTLMDAYCKMGEMAKAHELL 545



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 86/442 (19%), Positives = 172/442 (38%), Gaps = 43/442 (9%)

Query: 22  CDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNS 81
           C L KV  A +++ QM      P   +   ++       E + V ++   +    LKP+ 
Sbjct: 253 CQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVDELKGKGLKPDE 312

Query: 82  ETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKE 141
             + ++I L  K  +   A  LL  +++  + P   +Y  +++G+ +  +V  A  +  E
Sbjct: 313 YIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDE 372

Query: 142 MEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINAYTTCGE 198
           M +  + PD  T++ +IH       ++   + + ++   G +  +  + ALI+ Y   GE
Sbjct: 373 MRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGE 432

Query: 199 FEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRA 254
            ++A     Q+V     P        +AL   L  +G    A  +  E+   G       
Sbjct: 433 MKEAFSVHNQMVQKGLTP---NVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYT 489

Query: 255 VIALIEHLNSEGELNRLIQLLEEVHDPDYW---------MDGCCRL--------ILHCVR 297
              ++  L   G + + ++L+EE+    ++         MD  C++        +L  + 
Sbjct: 490 YNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIML 549

Query: 298 FKQLSSATDLLKQLKDKF------KDDEMAMEYHFSEIFCQIATTDPP---------DVQ 342
            K+L         L + F      +D E  +E+   +     ATT            +++
Sbjct: 550 NKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMR 609

Query: 343 IGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWM 402
              ++ + + D  G+ P     + L+     AR++K A  + KE    G      +Y  +
Sbjct: 610 ATTEIYKAMHDR-GVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDAL 668

Query: 403 YKAFLASGNRKSASKLLSKMPK 424
            + F        A KL  +M K
Sbjct: 669 IRGFYKRKKFVEARKLFEEMRK 690



 Score = 46.2 bits (108), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 28/138 (20%), Positives = 65/138 (47%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  ++  L+   C    +     ++E M++  ++P+  T NS++             
Sbjct: 553 LQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATT 612

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            IY  +    + P+S T+  +I  + K ++   A+ L  ++ E     TA+ Y+A++ G+
Sbjct: 613 EIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGF 672

Query: 127 FRKKDVQGALMVLKEMEQ 144
           +++K    A  + +EM +
Sbjct: 673 YKRKKFVEARKLFEEMRK 690


>gi|224103707|ref|XP_002313163.1| predicted protein [Populus trichocarpa]
 gi|222849571|gb|EEE87118.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 90/430 (20%), Positives = 184/430 (42%), Gaps = 24/430 (5%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           +   P   +Y  L+       ++  A++V+ +M      PS  T NS++ A         
Sbjct: 133 MGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEE 192

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
              +   +    +K +  T+ +M+S  V+    +SA  + ++++     P    +NA++ 
Sbjct: 193 AMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALIK 252

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQI 181
            +  +      + V +E++     PD  T++ L+        + ++   ++++K  G   
Sbjct: 253 MHGNRGKFAEMMKVFEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVP 312

Query: 182 TKYVFMALINAYTTCGEFEKARQV---VLDAEIPVKSRSEVKSALVSALASHGRTSDAII 238
            +  +  LI+AY+ CG F++A  +   +LD  I     +   +A+++ALA  G    +  
Sbjct: 313 ERDTYNTLISAYSRCGSFDQAMAMYKRMLDTGITPDLST--YNAVLAALARGGLWEQSEK 370

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLI-LHCVR 297
           +  E+++  C        +L+    +  E+ R++ L EE+         C  +I  H V 
Sbjct: 371 ILAEMQDGMCKPNELTHCSLLHAYANGKEIGRMLALAEEI---------CSGVIEPHAVL 421

Query: 298 FKQL---SSATDLLKQLKDKFKD-DEMAMEYHFSEIFCQIATTDPPD-VQIGLDLLQFIK 352
            K L   +S  DLL + +  F +          S +   IA       V    ++L F+K
Sbjct: 422 LKTLVLVNSKCDLLLEAERAFLELKRKGFSPDLSTLNAMIAIYGRRQMVTKTNEILNFMK 481

Query: 353 DELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNR 412
            E G  PS    + L+     + + +R+  + KE    G+  +++SY  +  A+  +G  
Sbjct: 482 -ESGFTPSLATYNSLMYMHSQSENFERSEEVLKEILAKGIKPDIISYNTVIFAYCRNGRM 540

Query: 413 KSASKLLSKM 422
           K AS + S+M
Sbjct: 541 KEASHIFSEM 550



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 82/416 (19%), Positives = 166/416 (39%), Gaps = 73/416 (17%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVRR 67
           P   +Y  LIT      +   A+ V ++M +    P+  T N IL+   +    +N +  
Sbjct: 31  PDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKITG 90

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           ++  + +  + P+  T+ ++I+   +   ++ A ++ +D+K M  +P    YN ++  Y 
Sbjct: 91  LFEGMKNAGILPDEYTYNTLITCCRRGSLYEEAAAVFEDMKSMGFVPDKVTYNTLLDVYG 150

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFM 187
           + + ++ A+ VL+EME     P   T++                                
Sbjct: 151 KSRRIKEAIEVLREMEVNGCSPSIVTYN-------------------------------- 178

Query: 188 ALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA 246
           +LI+AY   G  E+A ++     E  +K      +A++S     G+   A+ V+EE++ A
Sbjct: 179 SLISAYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTA 238

Query: 247 GCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATD 306
           GC        ALI+   + G+   ++++ EE+         CC     CV    + +   
Sbjct: 239 GCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKI-------CC-----CV--PDIVTWNT 284

Query: 307 LLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDF 366
           LL        D E+      S +F ++                     +G  P R   + 
Sbjct: 285 LLAVFGQNGMDSEV------SGVFKEM-------------------KRVGFVPERDTYNT 319

Query: 367 LLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           L+ A        +A  ++K   + G+  ++ +Y  +  A    G  + + K+L++M
Sbjct: 320 LISAYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARGGLWEQSEKILAEM 375



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 64/293 (21%), Positives = 124/293 (42%), Gaps = 8/293 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           ITP  ++Y  ++           +  ++ +M  G   P+  T  S+LHA     E   + 
Sbjct: 345 ITPDLSTYNAVLAALARGGLWEQSEKILAEMQDGMCKPNELTHCSLLHAYANGKEIGRML 404

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   IC   ++P++   ++++ +N K      A     +LK     P  S  NA++A Y
Sbjct: 405 ALAEEICSGVIEPHAVLLKTLVLVNSKCDLLLEAERAFLELKRKGFSPDLSTLNAMIAIY 464

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK---SAGGQITK 183
            R++ V     +L  M+++   P   T++ L++  S  E+  +  E LK   + G +   
Sbjct: 465 GRRQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQSENFERSEEVLKEILAKGIKPDI 524

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             +  +I AY   G  ++A  +  +  E  +       +  V++ A+     +AI V   
Sbjct: 525 ISYNTVIFAYCRNGRMKEASHIFSEMRESGLIPDVITYNTFVASYAADSMFEEAIDVVCY 584

Query: 243 IKEAGCNLEPRAVIALIE---HLNSEGELNRLIQLLEEVHDPDYWMDGCCRLI 292
           + + GC        ++I+    LN   +  + I  L E+ DP    +  CRL+
Sbjct: 585 MIKHGCKPNQNTYNSVIDGYCKLNRRDDAIKFISSLHEL-DPHISREDECRLL 636


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 112/241 (46%), Gaps = 12/241 (4%)

Query: 35  EQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKI 94
           E M+   + P   T+ +++ AC +S    L R ++  I  H    N +   ++I L  K 
Sbjct: 211 EMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKF 270

Query: 95  KDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTF 154
            + ++A  L D L   +++     +N ++ GY      + AL++ +EM ++   P+  T 
Sbjct: 271 GEVETACELFDGLWNKDVIS----WNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTM 326

Query: 155 SYLIHNCS--NEEDIIKYYEQL--KSAGGQITKYVFM--ALINAYTTCGEFEKARQVVLD 208
             ++  C+     DI ++      K   G +T    +  +LI+ Y  CG+ + A+QV  D
Sbjct: 327 LSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQV-FD 385

Query: 209 AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGEL 268
           + +  +S S   +A++S  A HGR + A  ++  ++  G   +    + L+   +  G L
Sbjct: 386 SSMSNRSLS-TWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGML 444

Query: 269 N 269
           +
Sbjct: 445 D 445



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 19/188 (10%)

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDS---AYSLLDDLKEMNLMPTASMYNA 121
           VR I+  +    L   +     ++   V    FD    A S+ D ++E NL+    ++N 
Sbjct: 4   VRXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLL----IWNT 59

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKS----A 177
           +  G+    D   AL +   M    + PDS TF +L+ +C+  + I K  +Q+       
Sbjct: 60  MFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSK-IRKEGQQIHGHVLKL 118

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSD 235
           G  +  YV  +LI+ Y   G  E AR+V       + S  +V S  AL++   S G    
Sbjct: 119 GFDLDIYVHTSLISMYAQNGRLEDARKV-----FDISSHRDVVSYTALIAGYVSRGYIES 173

Query: 236 AIIVYEEI 243
           A  +++EI
Sbjct: 174 AQKLFDEI 181



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 97/210 (46%), Gaps = 14/210 (6%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLK---PNSETFR- 85
           AL + ++M++    P+  T+ SIL AC      ++ R I+  I +  LK    N  + + 
Sbjct: 307 ALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYI-NKKLKGVVTNVSSLQT 365

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           S+I +  K  D D+A  + D       + T   +NA+++G+        A  +   M   
Sbjct: 366 SLIDMYAKCGDIDAAQQVFDSSMSNRSLST---WNAMISGFAMHGRANAAFDIFSRMRMN 422

Query: 146 NVKPDSQTFSYLIHNCSNEE--DIIKYYEQLKSAGGQITKYV--FMALINAYTTCGEFEK 201
            ++PD  TF  L+  CS+    D+ +   +  + G +IT  +  +  +I+     G F++
Sbjct: 423 GIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKE 482

Query: 202 ARQVVLDAEIPVKSRSEVKSALVSALASHG 231
           A +++    +P++    +  +L+ A   HG
Sbjct: 483 AEEMI--NTMPMEPDGVIWCSLLKACKIHG 510



 Score = 43.1 bits (100), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 67/141 (47%), Gaps = 12/141 (8%)

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           R+++ +  H ++     ++ ++I+  V     +SA  L D++   +++     +NA+++G
Sbjct: 144 RKVFDISSHRDVV----SYTALIAGYVSRGYIESAQKLFDEIPGKDVVS----WNAMISG 195

Query: 126 YFRKKDVQGALMVLKE-MEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQI 181
           Y    + + AL + KE M   NV+PD  T   ++  C+  + I      +  +   G   
Sbjct: 196 YVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFAS 255

Query: 182 TKYVFMALINAYTTCGEFEKA 202
              +  ALI+ Y+  GE E A
Sbjct: 256 NLKIVNALIDLYSKFGEVETA 276


>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
          Length = 550

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 97/433 (22%), Positives = 171/433 (39%), Gaps = 52/433 (12%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL    QM+   LVP + T N++L    +S  F    R++      N+K +  +F  MI 
Sbjct: 101 ALFYXNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFNET-KGNVKLDVYSFGIMIK 159

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              ++   D  + +L  ++EM L P   +Y  ++ G  +  D++    +  +M + +V  
Sbjct: 160 GCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVA 219

Query: 150 DSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           +  T++ LI+       ++D I+ YE++K  G     Y + ++I      G+   A ++ 
Sbjct: 220 NQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELF 279

Query: 207 LDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
            +  E  V       + L+  L    R  +A  +   +K  G  L P  +          
Sbjct: 280 DEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDG--LSPNLI---------- 327

Query: 266 GELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYH 325
              N LI             DG C +         L  A+ L  Q+K   +   +A  Y+
Sbjct: 328 -SYNTLI-------------DGYCSI-------GNLDKASSLFNQMKSSGQSPSLA-TYN 365

Query: 326 FSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWK 385
                  IA         G+  +    +  GL PS+     L+ A V + ++++A  I+ 
Sbjct: 366 I-----LIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYS 420

Query: 386 EYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM------PKDDPHVRFVIQACKQ- 438
             E AGL  ++  Y  +       G+ K ASKL   +      P D  +   +   CK+ 
Sbjct: 421 SMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEG 480

Query: 439 -TYTIPSLQKERG 450
            +Y    L KE G
Sbjct: 481 SSYRALRLLKEMG 493



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 116/247 (46%), Gaps = 8/247 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           I P+  +Y  +I   C+  K++ A ++ ++M +  +  +  T N+++   C+E       
Sbjct: 252 IVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLE-A 310

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            R+   +    L PN  ++ ++I     I + D A SL + +K     P+ + YN ++AG
Sbjct: 311 ERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAG 370

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQIT 182
           +   K+  G   +++EME   + P   T++ L+       N E   + Y  ++ AG    
Sbjct: 371 FSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVAD 430

Query: 183 KYVFMALINAYTTCGEFEKARQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
            Y++  LI+     G+ ++A ++   LD E+ +K    + + ++      G +  A+ + 
Sbjct: 431 IYIYGVLIHGLCVVGDMKEASKLFKSLD-EMHLKPNDVIYNTMIYGYCKEGSSYRALRLL 489

Query: 241 EEIKEAG 247
           +E+ E G
Sbjct: 490 KEMGENG 496



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 65/151 (43%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           +PS A+Y  LI    +        D+V +M    L PS  T   ++ A   S       +
Sbjct: 358 SPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQ 417

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           IY  +    L  +   +  +I     + D   A  L   L EM+L P   +YN ++ GY 
Sbjct: 418 IYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYC 477

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
           ++     AL +LKEM +  + P+  +++  I
Sbjct: 478 KEGSSYRALRLLKEMGENGMVPNVASYNSTI 508


>gi|224142151|ref|XP_002324422.1| predicted protein [Populus trichocarpa]
 gi|222865856|gb|EEF02987.1| predicted protein [Populus trichocarpa]
          Length = 453

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 111/245 (45%), Gaps = 4/245 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  L+   C+   +  A ++V +MV   + P   T N++  A  E  E     
Sbjct: 149 VKPNQRTYNILVRAWCNKENMEEAWNMVYKMVASGMQPDAVTYNTLARAYAEKGETIRAE 208

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   + +  + PN  T   +++   K  +   A   +  +KE+ ++P   ++N+++ G+
Sbjct: 209 EMILEMLNRRVTPNERTCSIIVNGYCKEGNMVDASRFVFRMKELGVLPNLFVFNSLIKGF 268

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITK 183
               D +G   VL  ME+  V+PD  TFS +++  S+   + K    +  +  A  +   
Sbjct: 269 LDTMDTEGVDEVLTLMEENGVRPDVVTFSTIMNAWSSAGRMDKCKEIFNDMVKAEIEPDI 328

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           + F  L   Y   GE EKA  ++    +  V     + + ++S   S G+   A+ VYE+
Sbjct: 329 HAFSILAKGYVRAGEPEKAESILTSMRKYGVHPNVVICTTVISGWCSAGKMEHAMKVYEK 388

Query: 243 IKEAG 247
           + E G
Sbjct: 389 MCEIG 393



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 113/244 (46%), Gaps = 13/244 (5%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P+  T  +++ A      F  + R+   +  + +KP+S  F S+I+   +  +   A  L
Sbjct: 46  PTLITYTTLVAALTRQKLFKSILRLISKVEENGMKPDSILFNSIINAFSESGNMKEAMKL 105

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163
              +KE    PT S +N ++ GY      + AL +L+ ++   VKP+ +T++ L+    N
Sbjct: 106 FRKMKESGCKPTTSTFNTLIKGYGNAGKTEEALKLLEFLQDGGVKPNQRTYNILVRAWCN 165

Query: 164 EEDIIKYYE---QLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEV 219
           +E++ + +    ++ ++G Q     +  L  AY   GE  +A +++L+     V      
Sbjct: 166 KENMEEAWNMVYKMVASGMQPDAVTYNTLARAYAEKGETIRAEEMILEMLNRRVTPNERT 225

Query: 220 KSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI------ALIEHLNSEGELNRLIQ 273
            S +V+     G   DA      +KE G  + P   +        ++ +++EG ++ ++ 
Sbjct: 226 CSIIVNGYCKEGNMVDASRFVFRMKELG--VLPNLFVFNSLIKGFLDTMDTEG-VDEVLT 282

Query: 274 LLEE 277
           L+EE
Sbjct: 283 LMEE 286



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 72/346 (20%), Positives = 154/346 (44%), Gaps = 24/346 (6%)

Query: 100 AYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159
           A+S+ + L +    PT   Y  ++A   R+K  +  L ++ ++E+  +KPDS  F+ +I+
Sbjct: 32  AHSIFNSLMDEGHKPTLITYTTLVAALTRQKLFKSILRLISKVEENGMKPDSILFNSIIN 91

Query: 160 NCS---NEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKS 215
             S   N ++ +K + ++K +G + T   F  LI  Y   G+ E+A +++    +  VK 
Sbjct: 92  AFSESGNMKEAMKLFRKMKESGCKPTTSTFNTLIKGYGNAGKTEEALKLLEFLQDGGVKP 151

Query: 216 RSEVKSALVSALASHGRTSDAI-IVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNR-- 270
                + LV A  +     +A  +VY   K     ++P AV    L      +GE  R  
Sbjct: 152 NQRTYNILVRAWCNKENMEEAWNMVY---KMVASGMQPDAVTYNTLARAYAEKGETIRAE 208

Query: 271 --LIQLLEEVHDPDYWMDGCCRLILHC-VRFKQLSSATDLLKQLKDKFKDDEMAMEYHFS 327
             ++++L     P+   +  C +I++   +   +  A+  + ++K+      + +     
Sbjct: 209 EMILEMLNRRVTPN---ERTCSIIVNGYCKEGNMVDASRFVFRMKELGVLPNLFVFNSLI 265

Query: 328 EIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEY 387
           + F     T+      G+D +  + +E G+ P       ++ A  +A  + +   I+ + 
Sbjct: 266 KGFLDTMDTE------GVDEVLTLMEENGVRPDVVTFSTIMNAWSSAGRMDKCKEIFNDM 319

Query: 388 ENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVI 433
             A +  ++ ++  + K ++ +G  + A  +L+ M K   H   VI
Sbjct: 320 VKAEIEPDIHAFSILAKGYVRAGEPEKAESILTSMRKYGVHPNVVI 365



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/248 (18%), Positives = 110/248 (44%), Gaps = 6/248 (2%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P S  +  +I    +   +  A+ +  +M +    P+T T N+++     + +     ++
Sbjct: 81  PDSILFNSIINAFSESGNMKEAMKLFRKMKESGCKPTTSTFNTLIKGYGNAGKTEEALKL 140

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    +KPN  T+  ++      ++ + A++++  +    + P A  YN +   Y  
Sbjct: 141 LEFLQDGGVKPNQRTYNILVRAWCNKENMEEAWNMVYKMVASGMQPDAVTYNTLARAYAE 200

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYV 185
           K +   A  ++ EM    V P+ +T S +++    E +++   ++  ++K  G     +V
Sbjct: 201 KGETIRAEEMILEMLNRRVTPNERTCSIIVNGYCKEGNMVDASRFVFRMKELGVLPNLFV 260

Query: 186 FMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           F +LI  +    + E   +V+ L  E  V+      S +++A +S GR      ++ ++ 
Sbjct: 261 FNSLIKGFLDTMDTEGVDEVLTLMEENGVRPDVVTFSTIMNAWSSAGRMDKCKEIFNDMV 320

Query: 245 EAGCNLEP 252
           +A   +EP
Sbjct: 321 KA--EIEP 326



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 71/142 (50%), Gaps = 3/142 (2%)

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           I+  +     KP   T+ ++++   + K F S   L+  ++E  + P + ++N+I+  + 
Sbjct: 35  IFNSLMDEGHKPTLITYTTLVAALTRQKLFKSILRLISKVEENGMKPDSILFNSIINAFS 94

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKY 184
              +++ A+ + ++M+++  KP + TF+ LI    N    E+ +K  E L+  G +  + 
Sbjct: 95  ESGNMKEAMKLFRKMKESGCKPTTSTFNTLIKGYGNAGKTEEALKLLEFLQDGGVKPNQR 154

Query: 185 VFMALINAYTTCGEFEKARQVV 206
            +  L+ A+      E+A  +V
Sbjct: 155 TYNILVRAWCNKENMEEAWNMV 176



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/166 (19%), Positives = 77/166 (46%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  L+            L ++ ++ +  + P +   NSI++A  ES       ++
Sbjct: 46  PTLITYTTLVAALTRQKLFKSILRLISKVEENGMKPDSILFNSIINAFSESGNMKEAMKL 105

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +     KP + TF ++I         + A  LL+ L++  + P    YN ++  +  
Sbjct: 106 FRKMKESGCKPTTSTFNTLIKGYGNAGKTEEALKLLEFLQDGGVKPNQRTYNILVRAWCN 165

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQL 174
           K++++ A  ++ +M  + ++PD+ T++ L    + + + I+  E +
Sbjct: 166 KENMEEAWNMVYKMVASGMQPDAVTYNTLARAYAEKGETIRAEEMI 211


>gi|413937640|gb|AFW72191.1| hypothetical protein ZEAMMB73_762171 [Zea mays]
          Length = 503

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 106/225 (47%), Gaps = 8/225 (3%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+ + +Q+    L  +TET+N +L A  +  +  L R ++ M+  H + P++ TF   + 
Sbjct: 172 AILLFDQLEDLGLERNTETMNVLLDALCKEKKVELAREVFVMLSPH-IAPDAYTFNIFVH 230

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
               ++  D A   ++++K     P    Y A++  Y ++++ +    VL  M      P
Sbjct: 231 GWCSVRRIDEALWTIEEMKTRGFPPIVITYTAVLEAYCKQRNFRRVYEVLDSMGSQGCHP 290

Query: 150 DSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           +  T++ ++ +   C   E+ +   +++KS+G +     + ALIN     G   +A Q V
Sbjct: 291 NVITYTMIMTSLTKCERFEEALSVSDRMKSSGCKPDTLFYNALINLLGRAGHLFEANQ-V 349

Query: 207 LDAEIP---VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC 248
              E+P   V       + ++S L  +GR  DA+ V +E++   C
Sbjct: 350 FRVEMPRNGVLRNVATYNTMISILCQYGRDDDALGVLKEMEAQSC 394



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 68/187 (36%), Gaps = 42/187 (22%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P + ++   +   C + ++  AL  +E+M      P   T  ++L A  +   F  V 
Sbjct: 218 IAPDAYTFNIFVHGWCSVRRIDEALWTIEEMKTRGFPPIVITYTAVLEAYCKQRNFRRVY 277

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA----- 121
            +   +      PN  T+  +++   K + F+ A S+ D +K     P    YNA     
Sbjct: 278 EVLDSMGSQGCHPNVITYTMIMTSLTKCERFEEALSVSDRMKSSGCKPDTLFYNALINLL 337

Query: 122 ----------------------------------IMAGYFRKKDVQGALMVLKEMEQANV 147
                                             I+  Y R  D   AL VLKEME  + 
Sbjct: 338 GRAGHLFEANQVFRVEMPRNGVLRNVATYNTMISILCQYGRDDD---ALGVLKEMEAQSC 394

Query: 148 KPDSQTF 154
           KPD QT+
Sbjct: 395 KPDLQTY 401


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/278 (20%), Positives = 127/278 (45%), Gaps = 4/278 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I+P+  +Y  LI+    + ++  A+D+  +M+   + P   T N ++    +  +    +
Sbjct: 228 ISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGK 287

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++ M+    +KPN  T+ S++     +K+ + A S+L  + +  + P    YN ++ G+
Sbjct: 288 TVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGF 347

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITK 183
            + K V  A+ + KEM   ++ PD  T++ LI        I   +K  +++   G     
Sbjct: 348 CKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDI 407

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             + ++++A     + +KA  ++    +  ++      + L+  L   GR  DA  ++E+
Sbjct: 408 ITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFED 467

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           +   G N+       +I    ++G  +  + LL ++ D
Sbjct: 468 LLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKD 505



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 91/441 (20%), Positives = 179/441 (40%), Gaps = 75/441 (17%)

Query: 2   HAKLEITPSSASYKKLITYSCDLLKVHVAL----DVVEQMVQGELVPSTETINSILHACE 57
           H  +   P++ ++  LI   C   ++H AL    +VV    Q + V     I+ +    E
Sbjct: 118 HQLMGYHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGE 177

Query: 58  ESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTAS 117
                +L+RR+   +    ++PN   + ++I    K K  + A+ L  ++    + P   
Sbjct: 178 TRAALDLLRRVDGNL----VQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVV 233

Query: 118 MYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQL 174
            Y+A+++G+F    ++ A+ +  +M   N+KPD  TF+ L+     +  + +    +  +
Sbjct: 234 TYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMM 293

Query: 175 KSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRT 233
              G +     + +L++ Y    E  KA+ ++   ++  V    +  + L+       + 
Sbjct: 294 MKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKV 353

Query: 234 SDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHD----PDY---- 283
            +A+ +++E+     ++ P  V   +LI+ L   G+++  ++L++E+HD    PD     
Sbjct: 354 DEAMNLFKEMHHK--HIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYS 411

Query: 284 -WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQ 342
             +D  C       +  Q+  A  LL +LKD+                            
Sbjct: 412 SILDALC-------KNHQVDKAIALLTKLKDQ---------------------------- 436

Query: 343 IGLDLLQFIKDELGLPPSRKCLDFLL-GACVNARDLKRAHLIWKEYENAGLPYNVLSYLW 401
                        G+ P+      L+ G C   R L+ AH I+++    G    V +Y  
Sbjct: 437 -------------GIRPNMYTYTILIDGLCKGGR-LEDAHNIFEDLLVKGYNITVNTYTV 482

Query: 402 MYKAFLASGNRKSASKLLSKM 422
           M   F   G    A  LLSKM
Sbjct: 483 MIHGFCNKGLFDEALALLSKM 503



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 80/166 (48%), Gaps = 1/166 (0%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           MH K  I P   +Y  LI   C L K+  AL +V++M    + P   T +SIL A  +++
Sbjct: 363 MHHK-HIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNH 421

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           + +    +   +    ++PN  T+  +I    K    + A+++ +DL       T + Y 
Sbjct: 422 QVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYT 481

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED 166
            ++ G+  K     AL +L +M+  +  PD+ T+  +I +  ++++
Sbjct: 482 VMIHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIIIRSLFDKDE 527


>gi|15236834|ref|NP_194398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334186944|ref|NP_001190849.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213515|sp|Q9SZ10.1|PP338_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g26680, mitochondrial; Flags: Precursor
 gi|4455191|emb|CAB36514.1| putative protein [Arabidopsis thaliana]
 gi|7269520|emb|CAB79523.1| putative protein [Arabidopsis thaliana]
 gi|332659836|gb|AEE85236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332659837|gb|AEE85237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 521

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 106/220 (48%), Gaps = 6/220 (2%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L    +  SY  LI   C+   +  AL +   M +  L P+  T N+++H    + +  
Sbjct: 266 RLGFRATDVSYNTLIAGHCEKGLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQ 325

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              +++  +   N+ PN+ T+ ++I+   +  D + A+   +D+    +      YNA++
Sbjct: 326 EASKVFGEMKAVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALI 385

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI-HNC--SNEEDIIKYYEQLKSAGGQ 180
            G  ++   + A   +KE+++ N+ P+S TFS LI   C   N +   + Y+ +  +G  
Sbjct: 386 FGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMGQCVRKNADRGFELYKSMIRSGCH 445

Query: 181 ITKYVFMALINAYTTCGEFEKARQVV---LDAEIPVKSRS 217
             +  F  L++A+    +F+ A QV+   +   IP+ SR+
Sbjct: 446 PNEQTFNMLVSAFCRNEDFDGASQVLREMVRRSIPLDSRT 485



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 99/235 (42%), Gaps = 6/235 (2%)

Query: 24  LLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSET 83
           L K   A D   QM     +P+ E+ N+ + +       ++  R Y  +    + PN  T
Sbjct: 181 LKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMRRCKISPNPYT 240

Query: 84  FRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME 143
              ++S   +    D    LL D++ +    T   YN ++AG+  K  +  AL +   M 
Sbjct: 241 LNMVMSGYCRSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKLKNMMG 300

Query: 144 QANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFE 200
           ++ ++P+  TF+ LIH        ++  K + ++K+         +  LIN Y+  G+ E
Sbjct: 301 KSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQGDHE 360

Query: 201 KARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRA 254
            A +   D       R  +  +AL+  L    +T  A    +E+ +   NL P +
Sbjct: 361 MAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKE--NLVPNS 413



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 82/167 (49%), Gaps = 3/167 (1%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M  K  + P+  ++  LI   C  +K+  A  V  +M    + P+T T N++++   +  
Sbjct: 298 MMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQG 357

Query: 61  EFNLVRRIYP-MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMY 119
           +  +  R Y  M+C+  ++ +  T+ ++I    K      A   + +L + NL+P +S +
Sbjct: 358 DHEMAFRFYEDMVCN-GIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLVPNSSTF 416

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE 165
           +A++ G   +K+      + K M ++   P+ QTF+ L+   C NE+
Sbjct: 417 SALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTFNMLVSAFCRNED 463



 Score = 40.0 bits (92), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 8/135 (5%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINS-ILHAC---EESYEFNLVRRI 68
           +Y  LI   C   K   A   V+++ +  LVP++ T ++ I+  C        F L + +
Sbjct: 380 TYNALIFGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMGQCVRKNADRGFELYKSM 439

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
               CH    PN +TF  ++S   + +DFD A  +L ++   ++   +   + +  G   
Sbjct: 440 IRSGCH----PNEQTFNMLVSAFCRNEDFDGASQVLREMVRRSIPLDSRTVHQVCNGLKH 495

Query: 129 KKDVQGALMVLKEME 143
           +   Q    +L+EME
Sbjct: 496 QGKDQLVKKLLQEME 510


>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 784

 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 139/321 (43%), Gaps = 6/321 (1%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           KL +  ++ ++  LI   C   K+  A+ ++ +M      P   + N+IL    +  + N
Sbjct: 205 KLGVKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLN 264

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             R +   + ++ L PN  TF  ++S   K+     A  ++D + + N++P    YN ++
Sbjct: 265 EARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLI 324

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQ 180
            G  +   +  A  +  EME   + PD  T++ LI+ C +    +K +E   +++  G +
Sbjct: 325 GGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVK 384

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIV 239
                +  ++  Y   G+ + A   +   E    S   V  + L++     GR S+A  +
Sbjct: 385 PNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRM 444

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFK 299
            +E+   G  +    +  ++  L  E +L+   +LL       Y++D      L    FK
Sbjct: 445 MDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFK 504

Query: 300 QLSSATDLLKQLKDKFKDDEM 320
              S   +  +L D+ K+ E+
Sbjct: 505 DGKSVEAM--KLWDEMKEKEI 523



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 88/202 (43%), Gaps = 5/202 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P++ +Y  ++ +     K+  A + + +M +    P   T N++++   ++   +   
Sbjct: 383 VKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAF 442

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R+   +    LK NS T  +++      +  D AY LL    +         Y  ++ GY
Sbjct: 443 RMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGY 502

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI----HNCSNEEDIIKYYEQLKSAGGQIT 182
           F+      A+ +  EM++  + P   T++ +I    H+   ++ I K  E L+S G    
Sbjct: 503 FKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLES-GLVPD 561

Query: 183 KYVFMALINAYTTCGEFEKARQ 204
           +  +  +I  Y   G+ EKA Q
Sbjct: 562 ETTYNTIILGYCREGQVEKAFQ 583



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 106/273 (38%), Gaps = 40/273 (14%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINS-ILHACEESYEFNL 64
           EI PS  +Y  +I   C   K   ++D + ++++  LVP   T N+ IL  C E  +   
Sbjct: 522 EIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREG-QVEK 580

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
             + +  +   + KP+  T   ++         D A  L +          A  YN I++
Sbjct: 581 AFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIIS 640

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKY 184
           G  ++   + A  +L EME+  + PD  T++ ++               L  AG      
Sbjct: 641 GLCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAIL-------------SALADAGRMKEAE 687

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSR---------------SEVKSALVSALAS 229
            FM+ I         E+ +  + D  I +  R               S   S  ++ L +
Sbjct: 688 EFMSRI--------VEQGK--LQDQTISLNKRKIESSSETSQESDPNSVTFSEQINELCT 737

Query: 230 HGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
            G+  DA+ + +E  + G  L     I+L+E L
Sbjct: 738 QGKYKDAMHMVQESTQKGITLHKSTYISLMEGL 770


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 10/221 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A  +  Q++   L P   T  S+L AC         R+++ +     L  N     ++I+
Sbjct: 105 AFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEGRQLHCLAIKLGLSENVYVCPTLIN 164

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +     + D A  + D + E    P    YNA++ GY R      AL + +E++  N+KP
Sbjct: 165 MYTACNEMDCARRVFDKIWE----PCVVTYNAMITGYARGSRPNEALSLFRELQARNLKP 220

Query: 150 DSQTFSYLIHNCS--NEEDIIKY-YEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
              T   ++ +C+     D+ K+ +E +K  G      V  ALI+ Y  CG  + A  V 
Sbjct: 221 TDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVF 280

Query: 207 LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
            +  +     ++  SA++ A A HG    A+ +++E+++AG
Sbjct: 281 ENMAV---RDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAG 318



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 107/245 (43%), Gaps = 18/245 (7%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  +IT      + + AL +  ++    L P+  T+ S+L +C      +L + +
Sbjct: 185 PCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWM 244

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDD----LKEMNLMPTASMYNAIMA 124
                H  +K N   F   + ++  + D  +    LDD     + M +  T +    IMA
Sbjct: 245 -----HEYVKKNG--FNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMA 297

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQI 181
                  ++ A+ + KEM +A  +PD  TF  L++ CS+    E+  +Y+  ++   G I
Sbjct: 298 YAIHGHGLK-AVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVI 356

Query: 182 TKYV-FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
                +  +++     G  E+A + ++   +P++    +   L+SA  SHG       V 
Sbjct: 357 PGIKHYGCMVDLLGRAGRLEEAYEFIVG--LPIRPTPILWRTLLSACGSHGNVELGKRVI 414

Query: 241 EEIKE 245
           E+I E
Sbjct: 415 EQIFE 419



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 14/179 (7%)

Query: 84  FRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME 143
           F +  SLN        A+ L D + +    P   ++N +  GY R      A  +  ++ 
Sbjct: 58  FINFCSLNPTTTSMQHAHHLFDQIPQ----PDIVLFNTMARGYARTDTPLRAFTLFTQIL 113

Query: 144 QANVKPDSQTFSYLIHNCSN----EEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEF 199
            + + PD  TF  L+  C++    EE    +   +K  G     YV   LIN YT C E 
Sbjct: 114 FSGLFPDDYTFPSLLKACASCKALEEGRQLHCLAIK-LGLSENVYVCPTLINMYTACNEM 172

Query: 200 EKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
           + AR+V      P        +A+++  A   R ++A+ ++ E++    NL+P  V  L
Sbjct: 173 DCARRVFDKIWEPCVV---TYNAMITGYARGSRPNEALSLFRELQAR--NLKPTDVTML 226


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 108/242 (44%), Gaps = 10/242 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL V + M Q  L P+  T  SIL+AC      +  RRI+  +    L  ++    ++++
Sbjct: 531 ALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVN 590

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +         A  + D + + +++     YNA++ GY      + AL +   +++  +KP
Sbjct: 591 MYSMCGSVKDARQVFDRMTQRDIVA----YNAMIGGYAAHNLGKEALKLFDRLQEEGLKP 646

Query: 150 DSQTFSYLIHNCSNEEDI--IKYYEQLKSAGGQITKYVFM-ALINAYTTCGEFEKARQVV 206
           D  T+  +++ C+N   +   K    L    G ++      AL++ Y  CG F  A   +
Sbjct: 647 DKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDA---L 703

Query: 207 LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
           L  +  +K      +A++   A HGR  D + ++E +K  G   +    ++L+   +  G
Sbjct: 704 LVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAG 763

Query: 267 EL 268
            L
Sbjct: 764 LL 765



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/254 (21%), Positives = 118/254 (46%), Gaps = 16/254 (6%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A ++  QM +  ++P+  T   +L+AC      +  R I+  +       +     ++IS
Sbjct: 430 ASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALIS 489

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  +      A  L + +   +++     + A++ G  +      AL V ++M+QA +KP
Sbjct: 490 MYARCGSIKDARLLFNKMVRKDIIS----WTAMIGGLAKSGLGAEALAVFQDMQQAGLKP 545

Query: 150 DSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           +  T++ +++ CS+   +    + ++Q+  AG     +V   L+N Y+ CG  + ARQ V
Sbjct: 546 NRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQ-V 604

Query: 207 LDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
            D    +  R  V  +A++   A+H    +A+ +++ ++E G   +    I ++    + 
Sbjct: 605 FD---RMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANS 661

Query: 266 GELNRLIQLLEEVH 279
           G L    +  +E+H
Sbjct: 662 GSL----EWAKEIH 671



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 105/223 (47%), Gaps = 12/223 (5%)

Query: 30  ALDVVEQMVQ-GELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
           A+DVV+ + Q G  V S + +  +L  C E  +    R ++  I  H    +  T  ++I
Sbjct: 125 AMDVVQYLQQQGARVNSCDYMK-MLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALI 183

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
           ++ ++    + A  + + L       T   +NA++ GY +   ++ AL +L+EM+Q  + 
Sbjct: 184 NMYIQCGSIEEARQVWNKLNHTE--RTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLA 241

Query: 149 PDSQTFSYLIHNCSNEEDIIKYYE-QLKSAGGQITKYVFMA--LINAYTTCGEFEKARQV 205
               T   L+ +C +   +    E  +++   ++   V +A  ++N Y  CG   +AR+V
Sbjct: 242 LGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREV 301

Query: 206 VLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAG 247
               E    ++S V  + ++   A  G +  A  +++++++ G
Sbjct: 302 FDKME----TKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEG 340



 Score = 45.4 bits (106), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 76/405 (18%), Positives = 158/405 (39%), Gaps = 28/405 (6%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL ++ +M Q  L     T   +L +C+        R I+       L  +      +++
Sbjct: 228 ALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILN 287

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K      A  + D ++  +++     +  I+ GY      + A  + ++M+Q  V P
Sbjct: 288 MYAKCGSIHEAREVFDKMETKSVVS----WTIIIGGYADCGHSEIAFEIFQKMQQEGVVP 343

Query: 150 DSQTFSYLIHNCSNEEDIIKYYEQLKS----AGGQITKYVFMALINAYTTCGEFEKARQV 205
           +  T+  ++ N  +    +K+ + + S    AG +    V  AL+  Y  CG ++  RQV
Sbjct: 344 NRITYINVL-NAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQV 402

Query: 206 VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
               E  V       + ++  LA  G   +A  +Y +++  G        + L+    + 
Sbjct: 403 F---EKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNP 459

Query: 266 GELNRLIQLLEEVHDPDYWMDGCCR--LILHCVRFKQLSSATDLLKQLKDKFKDDEMAME 323
             L+   ++   V    +  D   +  LI    R   +  A  L  ++    + D ++  
Sbjct: 460 TALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKM---VRKDIIS-- 514

Query: 324 YHFSEIFCQIATTDPPDVQIGLDLLQFIKD--ELGLPPSRKCLDFLLGACVNARDLKRAH 381
             ++ +   +A +      +G + L   +D  + GL P+R     +L AC +   L    
Sbjct: 515 --WTAMIGGLAKSG-----LGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGR 567

Query: 382 LIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDD 426
            I ++   AGL  +      +   +   G+ K A ++  +M + D
Sbjct: 568 RIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRD 612



 Score = 38.9 bits (89), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 59/298 (19%), Positives = 120/298 (40%), Gaps = 18/298 (6%)

Query: 135 ALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALIN 191
           A+ V++ ++Q   + +S  +  ++  C   +D++   + +E +      + +Y   ALIN
Sbjct: 125 AMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALIN 184

Query: 192 AYTTCGEFEKARQV---VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC 248
            Y  CG  E+ARQV   +   E  V S     +A+V     +G   +A+ +  E+++ G 
Sbjct: 185 MYIQCGSIEEARQVWNKLNHTERTVHSW----NAMVVGYVQYGYIEEALKLLREMQQHGL 240

Query: 249 NLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLL 308
            L     + L+    S   L    ++  E        D     + +C+    + +    +
Sbjct: 241 ALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFD---VNVANCIL--NMYAKCGSI 295

Query: 309 KQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLL 368
            + ++ F  D+M  +   S         D    +I  ++ Q ++ E G+ P+R     +L
Sbjct: 296 HEAREVF--DKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQE-GVVPNRITYINVL 352

Query: 369 GACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDD 426
            A      LK    +     NAG   ++     + K +   G+ K   ++  K+   D
Sbjct: 353 NAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRD 410


>gi|125524465|gb|EAY72579.1| hypothetical protein OsI_00445 [Oryza sativa Indica Group]
          Length = 1014

 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 125/283 (44%), Gaps = 10/283 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           +  S+  Y  L+   C  ++V  A++V   MV   +     T  ++++      E  +  
Sbjct: 229 VKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMAL 288

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           RI   +      P+      MI    K +  + A+SL   L ++ ++P    YNA++   
Sbjct: 289 RITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKL 348

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITK 183
            + +    A  + KEM    ++P+  T++ LIH        ED +  +++++  G ++T 
Sbjct: 349 CKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTV 408

Query: 184 YVFMALINAYTTCGEFEKARQV----VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
           Y + +LIN Y   G  ++AR +    V +   P  +     S L++ L  +G  S A+ +
Sbjct: 409 YPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAAS---YSPLIAGLCRNGDLSSAMEL 465

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPD 282
           + E+ E G         ALI     + +++   +L +++ D +
Sbjct: 466 HREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSN 508



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 90/429 (20%), Positives = 172/429 (40%), Gaps = 52/429 (12%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y  LI   C    +  A  ++  MV+  L P+  + + ++     + + +    ++  + 
Sbjct: 411 YNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSAMELHREMA 470

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
              +  N+ TF ++I+   K K  D A  L D + + N++P    +N ++ GY    +++
Sbjct: 471 ERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIR 530

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALI 190
            A  +  +M +  +KPD+ T+  LI        + K   +   L+++   +  +   AL+
Sbjct: 531 KAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALL 590

Query: 191 NAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVS-------ALASHGRTSDAIIVYEEI 243
                 G F +     L  E+ V+    VK  LVS       AL  H +    ++ + E+
Sbjct: 591 YGLFREGRFTETYH--LWDEMAVRG---VKLDLVSFTIIVYAALKQHDKEKSCVL-FREM 644

Query: 244 KEAGCNLEPRAVIALIEHLNSEGE----LNRLIQLLEEVHDPDYWMDGCCRLILHCVRFK 299
           KE G   +      +I+ L+ E      LN   Q++ + + P+        LI +  +  
Sbjct: 645 KEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVIDGYSPNTVTHTV--LINNLCKSG 702

Query: 300 QLSSATDLLKQ------LKDKFK------------DDEMAMEYHFSEIFCQIATT----- 336
            L SA  L K+      L +KF             D E A + H + +   +A+      
Sbjct: 703 YLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASIVSFNI 762

Query: 337 ------DPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENA 390
                     +Q  +DL++ I  E G  P       ++       D+ +A  +W E    
Sbjct: 763 LIKGLCKAGKIQEAIDLMRKIT-ESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYK 821

Query: 391 GLPYNVLSY 399
           GL  +V++Y
Sbjct: 822 GLKPDVVAY 830



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/253 (20%), Positives = 106/253 (41%), Gaps = 4/253 (1%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           A   + P+  +Y  LI   C    +  AL + ++M    +  +    NS+++   +    
Sbjct: 365 AGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSL 424

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           +  R +   +    L P + ++  +I+   +  D  SA  L  ++ E  +      + A+
Sbjct: 425 DRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSAMELHREMAERGIAWNNYTFTAL 484

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGG 179
           + G+ + K +  A  +  +M  +NV P+  TF+ +I       N     + Y+Q+   G 
Sbjct: 485 INGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGL 544

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAII 238
           +   Y + +LI+         KA + V D E      +    +AL+  L   GR ++   
Sbjct: 545 KPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGLFREGRFTETYH 604

Query: 239 VYEEIKEAGCNLE 251
           +++E+   G  L+
Sbjct: 605 LWDEMAVRGVKLD 617



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 67/356 (18%), Positives = 142/356 (39%), Gaps = 87/356 (24%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           A+  I  ++ ++  LI   C   K+  A  + ++M+   ++P+  T N ++         
Sbjct: 470 AERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNI 529

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMIS----------LNVKIKDFDSAYSLLDDLKEMNL 112
               ++Y  +    LKP++ T+RS+IS           N  + D +++Y++L+     N 
Sbjct: 530 RKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLN-----NF 584

Query: 113 MPTASMYNAIMAGYF------------------------------RKKDVQGALMVLKEM 142
             TA +Y     G F                              ++ D + + ++ +EM
Sbjct: 585 SLTALLYGLFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREM 644

Query: 143 EQANVKPDSQTFSYLIHNCSNEEDIIKY---YEQLKSAG--------------------- 178
           ++  VKPD   ++ +I   S EE++I+    ++Q+   G                     
Sbjct: 645 KEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVIDGYSPNTVTHTVLINNLCKSGYL 704

Query: 179 ------------GQI--TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--A 222
                       G +   K+ +   ++ + T G+ EKA+   L + +     + + S   
Sbjct: 705 GSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKD--LHSAMLQGHLASIVSFNI 762

Query: 223 LVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           L+  L   G+  +AI +  +I E+G + +  +   +I  L   G++N+  +L  E+
Sbjct: 763 LIKGLCKAGKIQEAIDLMRKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEM 818


>gi|91806021|gb|ABE65739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 450

 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/285 (20%), Positives = 131/285 (45%), Gaps = 8/285 (2%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           EI P   ++  LI+ S    K+  A  + ++M+   + P T T NS+++   +   F+  
Sbjct: 145 EINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDA 204

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           + ++ ++      P+  TF ++I +  + K  D    LL ++    L+   + YN ++ G
Sbjct: 205 KHMFDLMA----SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHG 260

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQIT 182
           +    ++  A  + +EM    V PD+ T + L++  C NE  E+ ++ +E ++ +   + 
Sbjct: 261 FCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLD 320

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYE 241
              +  +I+      + ++A  +     I  V+   +  + ++S        SDA +++ 
Sbjct: 321 TVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFH 380

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
           ++K+ G   +      LI      GE+++ I+L+ E+    +  D
Sbjct: 381 KMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGD 425



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/231 (19%), Positives = 97/231 (41%), Gaps = 3/231 (1%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           L  +P   ++  +I   C   +V   + ++ ++ +  LV +T T N+++H   E    N 
Sbjct: 210 LMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNA 269

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
            + ++  +  H + P++ T   ++    + +  + A  L + ++   +      YN I+ 
Sbjct: 270 AQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIH 329

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQI 181
           G  +   V  A  +   +    V+PD QT++ +I   C      D    + ++K  G + 
Sbjct: 330 GMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEP 389

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGR 232
               +  LI      GE +K+ +++ +      S       +V+ L + GR
Sbjct: 390 DNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVADLITDGR 440



 Score = 41.6 bits (96), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 38/198 (19%), Positives = 88/198 (44%), Gaps = 7/198 (3%)

Query: 12  ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSIL-HACEESYEFNLVRRIYP 70
            +Y  ++   C +     AL+++ +M +  + P     ++I+   C++ +  +  + ++ 
Sbjct: 46  VTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSD-AQYLFS 104

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
            +    + PN  T+  MI        +  A  LL D+ E  + P    +NA+++   ++ 
Sbjct: 105 EMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEG 164

Query: 131 DVQGALMVLKEMEQANVKPDSQTFSYLIHN-CS-NEEDIIKYYEQLKSAGGQITKYVFMA 188
            +  A  +  EM    + PD+ T++ +I+  C  N  D  K+   L ++   +T   F  
Sbjct: 165 KLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVT---FNT 221

Query: 189 LINAYTTCGEFEKARQVV 206
           +I+ Y      ++  Q++
Sbjct: 222 IIDVYCRAKRVDEGMQLL 239


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 95/465 (20%), Positives = 195/465 (41%), Gaps = 34/465 (7%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  LI        +  A  + ++MV   +  +    N++L+   ++ +     
Sbjct: 307 LKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKAL 366

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            I   +    ++P+S+T+  +I  + + ++   A+ LLD++K+  L PT   Y+ I+ G 
Sbjct: 367 EIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGL 426

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITK 183
            R  ++QG   +L+EM    +KP++  ++ L+   + E   E+     E+++  G     
Sbjct: 427 CRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDV 486

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           + + +LI  +      E+AR  +++  E  ++  +    A +   +  G    A   + E
Sbjct: 487 FCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNE 546

Query: 243 IKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMD-GCCRLILHCV-RF 298
           +    C + P   I  ALIE    EG +     +   +       D     +++H + R 
Sbjct: 547 M--LSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRN 604

Query: 299 KQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQ--FIKDELG 356
            ++  A  +  +L++K     +   + ++ +     +    +V     LL+   IK   G
Sbjct: 605 GKMHEAFGIFSELQEK---GLLPNAFTYNSLIS--GSCKQGNVDKASQLLEEMCIK---G 656

Query: 357 LPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSAS 416
           + P     + L+     A +++RA  ++ + E  GL  N ++Y  M   +  S N  +A 
Sbjct: 657 INPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAF 716

Query: 417 KLLSKM-----PKDDPHVRFVIQACKQTYTIPSLQKERGFEKDRD 456
           +LL +M     P D      ++  C          KE  FEK  D
Sbjct: 717 QLLEEMLLRGVPPDAFIYNVILNFC---------CKEEKFEKALD 752



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/258 (21%), Positives = 116/258 (44%), Gaps = 7/258 (2%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           K+H A  +  ++ +  L+P+  T NS++    +    +   ++   +C   + P+  T+ 
Sbjct: 606 KMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYN 665

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
            +I    K  + + A +L DD++   L P    Y A++ GY + K+   A  +L+EM   
Sbjct: 666 ILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLR 725

Query: 146 NVKPDSQTFSYLIHNCSNEEDIIK----YYEQLKSAGGQITKYVFMALINAYTTCGEFEK 201
            V PD+  ++ +++ C  EE   K    + E L+   G  +   F  LI  Y   G+ ++
Sbjct: 726 GVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEK--GFASTVSFNTLIEGYCKSGKLQE 783

Query: 202 ARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE 260
           A  ++ +  E          ++L+      G   +A  ++ E++E       +   +L+ 
Sbjct: 784 ANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLH 843

Query: 261 HLNSEGELNRLIQLLEEV 278
             ++ G ++ +  L EE+
Sbjct: 844 GYHNIGNMSEVSALFEEM 861



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 85/432 (19%), Positives = 172/432 (39%), Gaps = 62/432 (14%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K ++ P+  +Y  +I   C    +     ++ +MV   L P+     +++ A  +     
Sbjct: 409 KRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVE 468

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             R I   +    + P+   + S+I    K K  + A + L ++ E  L P A  Y A +
Sbjct: 469 ESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFI 528

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK 183
            GY +  +++ A     EM    V P+   ++ LI     E ++ + +   +        
Sbjct: 529 DGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFR-------- 580

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
                          F  +R+V+ D         +  S L+  L+ +G+  +A  ++ E+
Sbjct: 581 ---------------FILSRRVLQDV--------QTYSVLIHGLSRNGKMHEAFGIFSEL 617

Query: 244 KEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVH----DPD-----YWMDGCCRLI 292
           +E G  L P A    +LI     +G +++  QLLEE+     +PD       +DG C+  
Sbjct: 618 QEKG--LLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKA- 674

Query: 293 LHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIK 352
                  ++  A +L   ++ +             + +C+  + +P          Q ++
Sbjct: 675 ------GEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCK--SKNPTAA------FQLLE 720

Query: 353 DEL--GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASG 410
           + L  G+PP     + +L  C      ++A  +++E    G    V S+  + + +  SG
Sbjct: 721 EMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTV-SFNTLIEGYCKSG 779

Query: 411 NRKSASKLLSKM 422
             + A+ LL +M
Sbjct: 780 KLQEANHLLEEM 791



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 99/233 (42%), Gaps = 7/233 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P +  Y  ++ + C   K   ALD+ ++M++     ST + N+++    +S +     
Sbjct: 727 VPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFA-STVSFNTLIEGYCKSGKLQEAN 785

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +      PN  T+ S+I  N K      A  L  +++E N+MPTA  Y +++ GY
Sbjct: 786 HLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGY 845

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITK 183
               ++     + +EM    ++PD  T+  +I     E +++   K  +++   G  +  
Sbjct: 846 HNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMKS 905

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDA 236
              + L         F+ A  +   AE+    RS VK   VS   S G   D 
Sbjct: 906 GFRLGLPTCSVIARGFQIAGNMDEAAEV---LRSMVKFGWVSNTTSLGDLVDG 955



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/226 (21%), Positives = 103/226 (45%), Gaps = 21/226 (9%)

Query: 41  ELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKD---- 96
           E  PS  + NS+L    +  +  L  +++  +C H + P+  T+ +MIS + K+ +    
Sbjct: 184 EFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDA 243

Query: 97  -------------FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME 143
                         D A  L   + +  L+P    Y+ ++ G+  +K  + A ++L EM 
Sbjct: 244 KRVLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMI 303

Query: 144 QANVKPDSQTFSYLIHNCSNEEDIIKYY---EQLKSAGGQITKYVFMALINAYTTCGEFE 200
              +KP+  T++ LI     + DI + +   +++ + G +    ++  L+N     G+ E
Sbjct: 304 DVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKME 363

Query: 201 KARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
           KA +++ +  E  V+  S+  S L+         + A  + +E+K+
Sbjct: 364 KALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKK 409



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/203 (18%), Positives = 89/203 (43%), Gaps = 3/203 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  LI   C   +   A  ++ +M+   L P   T N+++       +     
Sbjct: 272 LVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAF 331

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           RI   +    ++ N   + ++++   K    + A  ++ ++ E  + P +  Y+ ++ G+
Sbjct: 332 RIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGH 391

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
            R +++  A  +L EM++  + P   T+S +I+    C N +       ++   G +   
Sbjct: 392 CRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNA 451

Query: 184 YVFMALINAYTTCGEFEKARQVV 206
            V+  L+ A+   G  E++R ++
Sbjct: 452 VVYTTLMTAHAKEGRVEESRMIL 474


>gi|255586139|ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526356|gb|EEF28650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 92/428 (21%), Positives = 185/428 (43%), Gaps = 28/428 (6%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P + +Y  L+           AL V+ +M +    P   T N ++ A   +        +
Sbjct: 326 PGTVTYNALLHVFGKAGIFSEALSVLSEMEENNCPPDAVTYNEVVAAYVRAGFHEEGAVV 385

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    + PN+ T+ ++I+   ++ D D A  + D + E+  +P  + YNA++ G   
Sbjct: 386 IDAMASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMMELGCVPNVATYNAVL-GMLG 444

Query: 129 KKDVQGALM-VLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY----YEQLKSAGGQITK 183
           KK +   +M +L  M+     P+  T++ ++  C  ++ + KY    + ++K+ G +  +
Sbjct: 445 KKSLSEEMMKILGHMKLNGCSPNHITWNTMLAMCG-KKGMHKYVNQVFREMKNCGFEPDR 503

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRS---EVKSALVSALASHGRTSDAIIVY 240
             F  LI+AY  CG    A +  +  E+     S      +AL++ALA  G    A  V 
Sbjct: 504 DTFNTLISAYGRCGSNNDAAK--MHEEMIKAGFSPCINTYNALLNALARRGDWKAAESVI 561

Query: 241 EEIKEAGCNLEPRAV-IALIEHLNSEGELNRLIQLLEE-VHDPDY---WMDGCCR-LILH 294
            +++  G    P     +L+ H  ++G   + I+++E+ ++D D    WM    R L+L 
Sbjct: 562 LDMRNKG--FRPSETSYSLMVHSYAKGGNVKGIEMIEKSIYDGDIFPSWM--LLRTLVLA 617

Query: 295 CVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDE 354
             + + L+      + L+      ++ +      IF +    D        ++L+ I D 
Sbjct: 618 NFKCRSLTGMERAFQALQKHGYKPDLVLCNSMLSIFAKNNMYDRAH-----EMLRLIHDA 672

Query: 355 LGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKS 414
            GL P     + L+       D  +A  + +  + +G   +++SY  + K F   G  + 
Sbjct: 673 -GLQPDLVTHNSLMDMYARGGDCWKAEEVLRMLQTSGGKPDLVSYNTVIKGFCRKGLMQE 731

Query: 415 ASKLLSKM 422
             ++LS+M
Sbjct: 732 GIRILSEM 739



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 91/202 (45%), Gaps = 5/202 (2%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMV-QGELVPSTETINSILHACEESYEFNLVRR 67
           PS  SY  ++        V   ++++E+ +  G++ PS   + +++ A  +      + R
Sbjct: 571 PSETSYSLMVHSYAKGGNVK-GIEMIEKSIYDGDIFPSWMLLRTLVLANFKCRSLTGMER 629

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
            +  +  H  KP+     SM+S+  K   +D A+ +L  + +  L P    +N++M  Y 
Sbjct: 630 AFQALQKHGYKPDLVLCNSMLSIFAKNNMYDRAHEMLRLIHDAGLQPDLVTHNSLMDMYA 689

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKY 184
           R  D   A  VL+ ++ +  KPD  +++ +I     +   ++ I+   ++ S G     +
Sbjct: 690 RGGDCWKAEEVLRMLQTSGGKPDLVSYNTVIKGFCRKGLMQEGIRILSEMTSIGVGPCIF 749

Query: 185 VFMALINAYTTCGEFEKARQVV 206
            +   I+ Y   G F +   V+
Sbjct: 750 TYNTFISGYAAQGMFTEINDVI 771



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 67/144 (46%)

Query: 31  LDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL 90
           L+++++M    L     T +++L AC      +  R  +  +     KP + T+ +++ +
Sbjct: 278 LELLDEMRSRGLDFDEFTCSTVLSACGREGLIDEAREFFSGLKSEGYKPGTVTYNALLHV 337

Query: 91  NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD 150
             K   F  A S+L +++E N  P A  YN ++A Y R    +   +V+  M    + P+
Sbjct: 338 FGKAGIFSEALSVLSEMEENNCPPDAVTYNEVVAAYVRAGFHEEGAVVIDAMASKGIMPN 397

Query: 151 SQTFSYLIHNCSNEEDIIKYYEQL 174
           + T++ +I+      DI K  E  
Sbjct: 398 AVTYTTIINAYGRVGDIDKALEMF 421



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/164 (17%), Positives = 74/164 (45%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L   P+ A+Y  ++            + ++  M      P+  T N++L  C +     
Sbjct: 426 ELGCVPNVATYNAVLGMLGKKSLSEEMMKILGHMKLNGCSPNHITWNTMLAMCGKKGMHK 485

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
            V +++  + +   +P+ +TF ++IS   +    + A  + +++ +    P  + YNA++
Sbjct: 486 YVNQVFREMKNCGFEPDRDTFNTLISAYGRCGSNNDAAKMHEEMIKAGFSPCINTYNALL 545

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI 167
               R+ D + A  V+ +M     +P   ++S ++H+ +   ++
Sbjct: 546 NALARRGDWKAAESVILDMRNKGFRPSETSYSLMVHSYAKGGNV 589



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 46/239 (19%), Positives = 92/239 (38%), Gaps = 40/239 (16%)

Query: 51  SILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKI-KDFDSAYSLLDDLKE 109
           +ILHA   + +++    I+  +    L P+  T+  M+ +  K+ + +D    LLD+++ 
Sbjct: 227 TILHAYSRTGKYHRAIEIFERMNESGLSPSLVTYNVMLDVYGKMGRSWDKILELLDEMRS 286

Query: 110 MNL-----------------------------------MPTASMYNAIMAGYFRKKDVQG 134
             L                                    P    YNA++  + +      
Sbjct: 287 RGLDFDEFTCSTVLSACGREGLIDEAREFFSGLKSEGYKPGTVTYNALLHVFGKAGIFSE 346

Query: 135 ALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALIN 191
           AL VL EME+ N  PD+ T++ ++         E+     + + S G       +  +IN
Sbjct: 347 ALSVLSEMEENNCPPDAVTYNEVVAAYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTIIN 406

Query: 192 AYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
           AY   G+ +KA ++     E+         +A++  L     + + + +   +K  GC+
Sbjct: 407 AYGRVGDIDKALEMFDQMMELGCVPNVATYNAVLGMLGKKSLSEEMMKILGHMKLNGCS 465


>gi|297803426|ref|XP_002869597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315433|gb|EFH45856.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 538

 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 105/220 (47%), Gaps = 6/220 (2%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L    +  SY  LI   C+   +  AL +   M +  L P+  T N+++H    + +  
Sbjct: 266 RLGFRATHVSYNTLIAGHCEKGLLSSALKLKNMMGKNGLQPNVVTFNTLIHGFCRAVKLQ 325

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              +++  +   NL PN+ T+ ++I+   +  D + A+   +D+    +      YN ++
Sbjct: 326 EASKVFGEMKALNLPPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNTLI 385

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI-HNC--SNEEDIIKYYEQLKSAGGQ 180
            G  ++   + A   +KE+++ N+ P+S TFS LI   C   N +   + Y+ +  +G  
Sbjct: 386 LGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMGQCVRRNADRGFELYKSMIRSGCH 445

Query: 181 ITKYVFMALINAYTTCGEFEKARQVV---LDAEIPVKSRS 217
             +  F  LI+A+    +F+ A QV+   +   IP+ SR+
Sbjct: 446 PNEQTFNILISAFCKNEDFDGAAQVLREMVRRSIPLDSRT 485



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 3/182 (1%)

Query: 24  LLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSET 83
           L K   A D   QM     +P+ E+ N+ + +       ++  R Y  +    + PN+ T
Sbjct: 181 LKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMRRCKISPNTYT 240

Query: 84  FRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME 143
              ++S   +    D    LL D++ +    T   YN ++AG+  K  +  AL +   M 
Sbjct: 241 LNMVMSGYCRSGKLDKGIELLQDMERLGFRATHVSYNTLIAGHCEKGLLSSALKLKNMMG 300

Query: 144 QANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFE 200
           +  ++P+  TF+ LIH        ++  K + ++K+         +  LIN Y+  G+ E
Sbjct: 301 KNGLQPNVVTFNTLIHGFCRAVKLQEASKVFGEMKALNLPPNTVTYNTLINGYSQQGDHE 360

Query: 201 KA 202
            A
Sbjct: 361 MA 362



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 82/167 (49%), Gaps = 3/167 (1%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M  K  + P+  ++  LI   C  +K+  A  V  +M    L P+T T N++++   +  
Sbjct: 298 MMGKNGLQPNVVTFNTLIHGFCRAVKLQEASKVFGEMKALNLPPNTVTYNTLINGYSQQG 357

Query: 61  EFNLVRRIYP-MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMY 119
           +  +  R Y  M+C+  ++ +  T+ ++I    K      A   + +L + NL+P +S +
Sbjct: 358 DHEMAFRFYEDMVCN-GIQRDILTYNTLILGLCKQAKTRKAAQFVKELDKENLVPNSSTF 416

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE 165
           +A++ G   +++      + K M ++   P+ QTF+ LI   C NE+
Sbjct: 417 SALIMGQCVRRNADRGFELYKSMIRSGCHPNEQTFNILISAFCKNED 463


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 124/278 (44%), Gaps = 6/278 (2%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNL 64
           +I P    +  ++   C   K+  A DVV+ M+   + P+  T N+++   C +S E + 
Sbjct: 272 KIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQS-EMDE 330

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
             +++  + H+   PN  ++ ++I+   KI+  D A  L +++ +  L+P    YN +M 
Sbjct: 331 AVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMH 390

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK- 183
           G      +Q A+ +  EM      PD  T+  L+     +  + +    LK+  G     
Sbjct: 391 GLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDP 450

Query: 184 --YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
              ++  +I+     GE E AR +  + +   ++      + +++ L   G   +A  ++
Sbjct: 451 DIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLF 510

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            E+   GC+ +      + + L    E  R IQLL+E+
Sbjct: 511 MEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEM 548



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 97/466 (20%), Positives = 183/466 (39%), Gaps = 69/466 (14%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTET----INSILHACEESYEFNL 64
           PS+  + +L+T      +      +  QM    + P   T    INS  H     + F++
Sbjct: 65  PSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRPGFAFSV 124

Query: 65  VRRIYPMICHHNLKPNSETFRSMI-SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
           + +I  +     L+P++ TF ++I  L V+ K  D A  L D +      P    Y  ++
Sbjct: 125 LAKILKL----GLQPDTATFTTLIRGLCVEGKIGD-ALHLFDKMIGEGFQPNVVTYGTLI 179

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK 183
            G  +  +   A+ +L+ MEQ N +PD   ++ +I +   +  + + +       GQ   
Sbjct: 180 NGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGIS 239

Query: 184 ---YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK--SALVSALASHGRTSDAII 238
              + + +LI++     E+ K    +L+  I  K   +V   S +V AL   G+ ++A  
Sbjct: 240 PDIFTYTSLIHSLCNLCEW-KHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHD 298

Query: 239 VYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEE-VHDP--------DYWMDG 287
           V + +   G  +EP  V   AL++    + E++  +++ +  VH+         +  ++G
Sbjct: 299 VVDMMIIRG--VEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLING 356

Query: 288 CCR------------------LILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEI 329
            C+                  LI + V +  L      + +L+D            F E+
Sbjct: 357 YCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIA--------LFHEM 408

Query: 330 FCQIATTDPPDVQIGLD-------------LLQFIKDELGLPPSRKCLDFLLGACVNARD 376
                  D    +I LD             LL+ I+    + P  +    ++     A +
Sbjct: 409 VAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGS-NMDPDIQIYTIVIDGMCRAGE 467

Query: 377 LKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           L+ A  I+    + GL  NV +Y  M       G    A+KL  +M
Sbjct: 468 LEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEM 513



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 62/150 (41%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P  A+Y+ L+ Y C    +  A+ +++ +    + P  +    ++     + E    R I
Sbjct: 415 PDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDI 474

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    L+PN  T+  MI+   +    D A  L  ++      P    YN I  G  +
Sbjct: 475 FSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQ 534

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            K+   A+ +L+EM       D  T + L+
Sbjct: 535 NKEALRAIQLLQEMLARGFSADVSTTTLLV 564


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 93/468 (19%), Positives = 194/468 (41%), Gaps = 40/468 (8%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  LI        +  A  + ++MV   +  +    N++L+   ++ +     
Sbjct: 316 LKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKAL 375

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            I   +    ++P+S+T+  +I  + + ++   A+ LLD++K+  L PT   Y+ I+ G 
Sbjct: 376 EIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGL 435

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITK 183
            R  ++QG   +L+EM    +KP++  ++ L+   + E   E+     E+++  G     
Sbjct: 436 CRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDV 495

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           + + +LI  +      E+AR  +++  E  ++  +    A +   +  G    A   + E
Sbjct: 496 FCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNE 555

Query: 243 IKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMD-GCCRLILHCV-RF 298
           +    C + P   I  ALIE    EG +     +   +       D     +++H + R 
Sbjct: 556 M--LSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRN 613

Query: 299 KQLSSATDLLKQLKDKFKDDEMAMEYHFSEIF---CQIATTDPPDVQIGLDLLQFIKDEL 355
            ++  A  +  +L++K     +   + ++ +    C+    D           Q +++  
Sbjct: 614 GKMHEAFGIFSELQEK---GLLPNAFTYNSLISGSCKQGNVDKAS--------QLLEEMC 662

Query: 356 --GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRK 413
             G+ P     + L+     A +++RA  ++ + E  GL  N ++Y  M   +  S N  
Sbjct: 663 IKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPT 722

Query: 414 SASKLLSKM-----PKDDPHVRFVIQACKQTYTIPSLQKERGFEKDRD 456
           +A +LL +M     P D      ++  C          KE  FEK  D
Sbjct: 723 AAFQLLEEMLLRGVPPDAFIYNVILNFC---------CKEEKFEKALD 761



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/258 (21%), Positives = 116/258 (44%), Gaps = 7/258 (2%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           K+H A  +  ++ +  L+P+  T NS++    +    +   ++   +C   + P+  T+ 
Sbjct: 615 KMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYN 674

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
            +I    K  + + A +L DD++   L P    Y A++ GY + K+   A  +L+EM   
Sbjct: 675 ILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLR 734

Query: 146 NVKPDSQTFSYLIHNCSNEEDIIK----YYEQLKSAGGQITKYVFMALINAYTTCGEFEK 201
            V PD+  ++ +++ C  EE   K    + E L+   G  +   F  LI  Y   G+ ++
Sbjct: 735 GVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEK--GFASTVSFNTLIEGYCKSGKLQE 792

Query: 202 ARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE 260
           A  ++ +  E          ++L+      G   +A  ++ E++E       +   +L+ 
Sbjct: 793 ANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLH 852

Query: 261 HLNSEGELNRLIQLLEEV 278
             ++ G ++ +  L EE+
Sbjct: 853 GYHNIGNMSEVSALFEEM 870



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 85/432 (19%), Positives = 172/432 (39%), Gaps = 62/432 (14%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K ++ P+  +Y  +I   C    +     ++ +MV   L P+     +++ A  +     
Sbjct: 418 KRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVE 477

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             R I   +    + P+   + S+I    K K  + A + L ++ E  L P A  Y A +
Sbjct: 478 ESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFI 537

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK 183
            GY +  +++ A     EM    V P+   ++ LI     E ++ + +   +        
Sbjct: 538 DGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFR-------- 589

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
                          F  +R+V+ D         +  S L+  L+ +G+  +A  ++ E+
Sbjct: 590 ---------------FILSRRVLQDV--------QTYSVLIHGLSRNGKMHEAFGIFSEL 626

Query: 244 KEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVH----DPD-----YWMDGCCRLI 292
           +E G  L P A    +LI     +G +++  QLLEE+     +PD       +DG C+  
Sbjct: 627 QEKG--LLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKA- 683

Query: 293 LHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIK 352
                  ++  A +L   ++ +             + +C+  + +P          Q ++
Sbjct: 684 ------GEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCK--SKNPTAA------FQLLE 729

Query: 353 DEL--GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASG 410
           + L  G+PP     + +L  C      ++A  +++E    G    V S+  + + +  SG
Sbjct: 730 EMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTV-SFNTLIEGYCKSG 788

Query: 411 NRKSASKLLSKM 422
             + A+ LL +M
Sbjct: 789 KLQEANHLLEEM 800



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 111/243 (45%), Gaps = 6/243 (2%)

Query: 41  ELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSA 100
           E  PS  + NS+L    +  +  L  +++  +C H + P+  T+ +MIS + K+ +   A
Sbjct: 175 EFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDA 234

Query: 101 YSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160
             +L ++ E    P    YN I+ G  R + +  A+ + + M    + PD  T+  LI+ 
Sbjct: 235 KRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILING 294

Query: 161 CSNE----EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKS 215
              E    E  +   E +   G +     + ALI+ +   G+ E+A ++  +     +++
Sbjct: 295 FCMEKRSREAKLMLLEMI-DVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEA 353

Query: 216 RSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLL 275
              + + L++ +   G+   A+ + +E+ E G   + +    LIE       + R  +LL
Sbjct: 354 NLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELL 413

Query: 276 EEV 278
           +E+
Sbjct: 414 DEM 416



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 89/196 (45%), Gaps = 4/196 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P +  Y  ++ + C   K   ALD+ ++M++     ST + N+++    +S +     
Sbjct: 736 VPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFA-STVSFNTLIEGYCKSGKLQEAN 794

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +      PN  T+ S+I  N K      A  L  +++E N+MPTA  Y +++ GY
Sbjct: 795 HLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGY 854

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITK 183
               ++     + +EM    ++PD  T+  +I     E +++   K  +++   G  ++ 
Sbjct: 855 HNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSV 914

Query: 184 YVFMALINAYTTCGEF 199
             + ALI A     EF
Sbjct: 915 AAYDALIQALCKKEEF 930



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 129/317 (40%), Gaps = 42/317 (13%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P++ +Y  LI+ SC    V  A  ++E+M    + P   T N ++    ++ E    +
Sbjct: 631 LLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAK 690

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM--- 123
            ++  I    L PN  T+ +M+    K K+  +A+ LL+++    + P A +YN I+   
Sbjct: 691 NLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFC 750

Query: 124 -------------------------------AGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
                                           GY +   +Q A  +L+EM +    P+  
Sbjct: 751 CKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHV 810

Query: 153 TFSYLI-HNCSNE--EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA 209
           T++ LI HNC      +  + + +++      T   + +L++ Y   G   +     L  
Sbjct: 811 TYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVS--ALFE 868

Query: 210 EIPVKSRSEVKSA---LVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
           E+  K     K     ++ A    G   +A  + +EI   G  +   A  ALI+ L  + 
Sbjct: 869 EMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQALCKKE 928

Query: 267 ELNRLIQLLEEVHDPDY 283
           E   +++LL E+ +  +
Sbjct: 929 EFFEVLKLLNEIGESGF 945



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 38/203 (18%), Positives = 89/203 (43%), Gaps = 3/203 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  LI   C   +   A  ++ +M+   L P   T N+++       +     
Sbjct: 281 LVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAF 340

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           RI   +    ++ N   + ++++   K    + A  ++ ++ E  + P +  Y+ ++ G+
Sbjct: 341 RIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGH 400

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
            R +++  A  +L EM++  + P   T+S +I+    C N +       ++   G +   
Sbjct: 401 CRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNA 460

Query: 184 YVFMALINAYTTCGEFEKARQVV 206
            V+  L+ A+   G  E++R ++
Sbjct: 461 VVYTTLMTAHAKEGRVEESRMIL 483



 Score = 38.1 bits (87), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 28/152 (18%), Positives = 69/152 (45%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +  P+  +Y  LI ++C    +  A  +  +M +  ++P+ +T  S+LH        + V
Sbjct: 804 QFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEV 863

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             ++  +    ++P+  T+  MI    +  +   A  L D++    +  + + Y+A++  
Sbjct: 864 SALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQA 923

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYL 157
             +K++    L +L E+ ++  +    T S +
Sbjct: 924 LCKKEEFFEVLKLLNEIGESGFRLGLPTCSVI 955


>gi|413944087|gb|AFW76736.1| hypothetical protein ZEAMMB73_938811 [Zea mays]
          Length = 496

 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 60/276 (21%), Positives = 125/276 (45%), Gaps = 5/276 (1%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGE-LVPSTETINSILHACEESYEFNL 64
           ++ P+  +Y  LI   C   K+  A ++ E+M++ + +VP     N I+       + + 
Sbjct: 215 DVKPNLVTYSTLIGGLCRGGKMKEAFELFEEMIEKDRIVPDQLLYNVIIDGFCRQGQVDK 274

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
            R I+  +  +  +PN+  + ++I+ + K  D ++A S+ ++++   + P A  Y A++ 
Sbjct: 275 ARAIFGFMRKNECEPNTFNYATLINGHCKKADIEAARSVFEEMRNSGVEPDAVSYTALIG 334

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA---GGQI 181
              R   V   + ++ EM++   + D  T++ +I     +   ++    L+S    G ++
Sbjct: 335 CLCRHGSVDEGIGLVLEMKEKGCRADVVTYNLVIEGLCKDGRTVEAMGLLESVPLEGVKL 394

Query: 182 TKYVFMALINAYTTCGEFEKA-RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
               +  L+N   + GE ++A   + L             + L+  L   GR +DA +  
Sbjct: 395 NVASYRILMNCLCSRGEMDRAVGLLGLMLGRGFLPHYAASNNLLIGLCDAGRIADATMAL 454

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276
             + +AG   EPR    L+E +  E +  R   LLE
Sbjct: 455 YGLADAGFMPEPRCWERLVESVCRERKQRRSTDLLE 490



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 96/209 (45%), Gaps = 8/209 (3%)

Query: 78  KPNSETFRSMISLNVKIKDFDSAYSLLDDLKE---MNLMPTASMYNAIMAGYFRKKDVQG 134
           +PN+  +  ++   VK  + ++A+ +LD+++E    ++ P    Y+ ++ G  R   ++ 
Sbjct: 179 RPNTCVYNILVKHYVKNGELETAFKVLDEMREYTCADVKPNLVTYSTLIGGLCRGGKMKE 238

Query: 135 ALMVLKEM-EQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALI 190
           A  + +EM E+  + PD   ++ +I     +  + K    +  ++    +   + +  LI
Sbjct: 239 AFELFEEMIEKDRIVPDQLLYNVIIDGFCRQGQVDKARAIFGFMRKNECEPNTFNYATLI 298

Query: 191 NAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
           N +    + E AR V  +     V+  +   +AL+  L  HG   + I +  E+KE GC 
Sbjct: 299 NGHCKKADIEAARSVFEEMRNSGVEPDAVSYTALIGCLCRHGSVDEGIGLVLEMKEKGCR 358

Query: 250 LEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            +      +IE L  +G     + LLE V
Sbjct: 359 ADVVTYNLVIEGLCKDGRTVEAMGLLESV 387



 Score = 41.6 bits (96), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 88/180 (48%), Gaps = 18/180 (10%)

Query: 114 PTASMYNAIMAGYFRKKDVQGALMVLKEMEQ---ANVKPDSQTFSYLIHN-CSNEE--DI 167
           P   +YN ++  Y +  +++ A  VL EM +   A+VKP+  T+S LI   C   +  + 
Sbjct: 180 PNTCVYNILVKHYVKNGELETAFKVLDEMREYTCADVKPNLVTYSTLIGGLCRGGKMKEA 239

Query: 168 IKYYEQLKSAGGQIT-KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS-ALVS 225
            + +E++      +  + ++  +I+ +   G+ +KAR +        K+  E  +    +
Sbjct: 240 FELFEEMIEKDRIVPDQLLYNVIIDGFCRQGQVDKARAIF---GFMRKNECEPNTFNYAT 296

Query: 226 ALASHGRTSD---AIIVYEEIKEAGCNLEPRAV--IALIEHLNSEGELNRLIQLLEEVHD 280
            +  H + +D   A  V+EE++ +G  +EP AV   ALI  L   G ++  I L+ E+ +
Sbjct: 297 LINGHCKKADIEAARSVFEEMRNSG--VEPDAVSYTALIGCLCRHGSVDEGIGLVLEMKE 354


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 107/245 (43%), Gaps = 7/245 (2%)

Query: 9    PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
            P+  SY  +I   C   KVH  + ++EQM+    VP   T N+I+ A  ++Y  ++   +
Sbjct: 1121 PNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYEL 1180

Query: 69   YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL-KEMNLMPTASMYNAIMAGYF 127
            + +I      PN  T+ S++    K + FD A  LL ++ ++    P    YN ++ G  
Sbjct: 1181 FNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLC 1240

Query: 128  RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLKSAGGQITKY 184
            + K V  A  +  +M    + PD  T+S +I +       ++     E +   G      
Sbjct: 1241 KSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAI 1300

Query: 185  VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK--SALVSALASHGRTSDAIIVYEE 242
             +  LI+ +   G  +KA + +L   +   S  +V   S  +  L+  GR   A  + E 
Sbjct: 1301 TYGTLIDGFCKTGNLDKALE-ILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLET 1359

Query: 243  IKEAG 247
            +  AG
Sbjct: 1360 MLRAG 1364



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 116/276 (42%), Gaps = 4/276 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P + +Y  +I+  C   K+  A D++EQM++    P    +++++ A  ++   +  + +
Sbjct: 403 PDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQEL 462

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
             M    +  P+   +  +I    K K    A S LD + +    P    YN+++ G  +
Sbjct: 463 LRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCK 522

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-C--SNEEDIIKYYEQLKSAGGQITKYV 185
            + +  A ++   M  A V PD  T+S +IH+ C  +N +   K  E++K A        
Sbjct: 523 SRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVT 582

Query: 186 FMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           + ALIN     G  +KA  V  +             + L+  L    +   A  + E ++
Sbjct: 583 YSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMR 642

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           +  C  +      LI  L +   L    ++L E+ D
Sbjct: 643 KQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKD 678



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 86/462 (18%), Positives = 182/462 (39%), Gaps = 61/462 (13%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  SY  ++   C   +V  AL ++EQMV     P   +  ++++   +  + +   R+
Sbjct: 263 PNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRV 322

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +     +PN  T+ +++    ++ D D A  L+  + E    P A  YN IM  + R
Sbjct: 323 MDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCR 382

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY---EQLKSAGGQITKYV 185
           + D++ A  VL+ M Q    PD+  +S +I        + + +   EQ+   G +     
Sbjct: 383 RNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVAC 442

Query: 186 FMALINAYTTCGEFEKARQ------------------VVLDAEIPVKSRSEVKS------ 221
              LI+A       + A++                  +++ A    K   E +S      
Sbjct: 443 LSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMV 502

Query: 222 ------------ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN 269
                       ++V  L    R +DA ++++ ++ AG   +      +I     +  L+
Sbjct: 503 KNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLD 562

Query: 270 RLIQLLEEVHD----PDY-----WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEM 320
              ++LE + +    PD       ++G C+          +  A D+ +++        +
Sbjct: 563 SAFKMLERMKEAKCVPDVVTYSALINGLCKA-------GTVDKAFDVFQEMLGCGCAPNL 615

Query: 321 AMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRA 380
                  +  C+I       V+   ++L+ ++ +   P S      + G C NA  L+ A
Sbjct: 616 VTYNTLIDGLCKINK-----VEQAAEMLEIMRKQSCTPDSITYTCLINGLC-NASRLEEA 669

Query: 381 HLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
             + +E ++ G   + ++Y  + +A   + N +   +LL +M
Sbjct: 670 WRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEM 711



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/225 (20%), Positives = 106/225 (47%), Gaps = 8/225 (3%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVRR 67
           P S +Y  +I       ++  A+ ++E+MV     P+  + N++LH  C+ +   N +  
Sbjct: 228 PDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWL 287

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +  M+      P+  ++ ++I+   K+   D A  ++D + +    P    Y  ++ G+ 
Sbjct: 288 LEQMV-TRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFC 346

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK---SAGGQITKY 184
           R  D+ GA+ ++++M +   +P++ T++ ++H      D+ + ++ L+     G      
Sbjct: 347 RVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAI 406

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK--SALVSAL 227
            +  +I+ +   G+  +A   +L+  I    R +V   S L+ AL
Sbjct: 407 NYSTIISGFCKAGKLREAHD-LLEQMIRRGCRPDVACLSTLIDAL 450



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 90/199 (45%), Gaps = 5/199 (2%)

Query: 8    TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVR 66
            +P+  +Y  +I   C L ++  A  ++E+MV G   P+  T   +L A C+     + + 
Sbjct: 1015 SPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIG 1074

Query: 67   RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
             +  M+      PN  T+ S++ +  K  + + A  LL  + +   +P    YN ++AG 
Sbjct: 1075 LVEVMV-EKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGL 1133

Query: 127  FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEEDIIKY--YEQLKSAGGQITK 183
             +   V   +++L++M   N  PD  TF+ +I   C      I Y  +  ++ +G     
Sbjct: 1134 CKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNL 1193

Query: 184  YVFMALINAYTTCGEFEKA 202
              + +L++       F++A
Sbjct: 1194 VTYNSLVHGLCKSRRFDQA 1212



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 107/278 (38%), Gaps = 31/278 (11%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M   ++  P   +Y  LI   C   ++  A   ++ MV+    P   T NS++    +S 
Sbjct: 465 MSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSR 524

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
             N    ++  +    + P+  T+  +I    K  + DSA+ +L+ +KE   +P    Y+
Sbjct: 525 RINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYS 584

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQ 180
           A++ G  +   V  A  V +EM      P+  T++ LI        + +  E L      
Sbjct: 585 ALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEML------ 638

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
                            E  + +    D        S   + L++ L +  R  +A  V 
Sbjct: 639 -----------------EIMRKQSCTPD--------SITYTCLINGLCNASRLEEAWRVL 673

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            E+K+ GC  +      L+  L     L  + QLL+E+
Sbjct: 674 REMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEM 711



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 85/435 (19%), Positives = 165/435 (37%), Gaps = 47/435 (10%)

Query: 11  SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVRRIY 69
           + +Y  LI+      K+  A ++ ++M +  L        SIL   C+     + V    
Sbjct: 161 TVTYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFR 220

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
            M       P+S T+ +MI+   K    D A  LL+++ +    P    YN ++ G+ + 
Sbjct: 221 EM--SKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKA 278

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVF 186
             V+ AL +L++M      PD  +++ +I+     + +    +  +++   G Q     +
Sbjct: 279 NRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITY 338

Query: 187 MALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
             L++ +   G+ + A ++V    E   +  +   + ++           A  V + + +
Sbjct: 339 GTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQ 398

Query: 246 AGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQLSS 303
            GC  +      +I      G+L     LLE++       D  C   LI    +   + S
Sbjct: 399 TGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDS 458

Query: 304 ATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKC 363
           A +LL+                       I     PDV     L+  +     LP +   
Sbjct: 459 AQELLRM---------------------SIGMDCAPDVVAYSILIHALCKAKRLPEAESW 497

Query: 364 LDFLL----------------GACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFL 407
           LD ++                G C  +R +  A L++     AG+  +V++Y  +  +F 
Sbjct: 498 LDVMVKNRCYPDVVTYNSVVDGLC-KSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFC 556

Query: 408 ASGNRKSASKLLSKM 422
              N  SA K+L +M
Sbjct: 557 KDNNLDSAFKMLERM 571



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 101/233 (43%), Gaps = 7/233 (3%)

Query: 22   CDLLKVHVALDVVEQMVQ-GELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPN 80
            C   K+  AL++ ++M + G   P   T ++I+ +  +S + +   R+   +      PN
Sbjct: 923  CSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPN 982

Query: 81   SETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLK 140
              T+ S++    K    D A +LL  +      P    YN I+ G+ +   +  A  +L+
Sbjct: 983  VVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLE 1042

Query: 141  EMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCG 197
            EM     +P+  T++ L+     C   ED I   E +   G     + + +L++ +    
Sbjct: 1043 EMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKD 1102

Query: 198  EFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEIKEAGC 248
            E E+A Q +L + I       V S   +++ L    +  + +++ E++    C
Sbjct: 1103 EVERACQ-LLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNC 1154



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 89/210 (42%), Gaps = 5/210 (2%)

Query: 79   PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMV 138
            PN  TF  +I    +  D  +AY LL ++    +     ++N ++ G    + +  AL +
Sbjct: 875  PNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALEL 934

Query: 139  LKEMEQ-ANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYT 194
             KEME+  +  PD  T+S ++ +       +D  +  E + S G       + +L++   
Sbjct: 935  FKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLC 994

Query: 195  TCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPR 253
              G+ ++A  ++        S + V  + ++      GR  +A  + EE+ + GC     
Sbjct: 995  KAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVV 1054

Query: 254  AVIALIEHLNSEGELNRLIQLLEEVHDPDY 283
                L++     G+    I L+E + +  Y
Sbjct: 1055 TYTVLLDAFCKCGKAEDAIGLVEVMVEKGY 1084



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/248 (18%), Positives = 106/248 (42%), Gaps = 10/248 (4%)

Query: 9    PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
            P   +Y  ++       KV  A  +VE MV     P+  T +S+LH   ++ + +    +
Sbjct: 946  PDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATAL 1005

Query: 69   YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
               +      PN  T+ ++I  + K+   D AY LL+++ +    P    Y  ++  + +
Sbjct: 1006 LQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCK 1065

Query: 129  KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMA 188
                + A+ +++ M +    P+  T++ L+     ++++ +  + L S    I K     
Sbjct: 1066 CGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSS---MIQKGCVPN 1122

Query: 189  LINAYTTCGEFEKARQV-----VLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYE 241
            +++  T      KA +V     +L+  +      ++ +   ++ A+    R   A  ++ 
Sbjct: 1123 VVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFN 1182

Query: 242  EIKEAGCN 249
             I+E+GC 
Sbjct: 1183 LIQESGCT 1190



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/239 (19%), Positives = 98/239 (41%), Gaps = 14/239 (5%)

Query: 7    ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
            + P   +Y  +I+  C    +  A +V+E M++    P   T  +++    ++   +   
Sbjct: 1260 LAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKAL 1319

Query: 67   RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
             I  ++      P+  TF   I    K      A  LL+ +    L+P    YN ++ G+
Sbjct: 1320 EILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGF 1379

Query: 127  FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVF 186
                  + A+ + + M Q   +PD+ T++ L+ +  ++    K Y+ L +   +++K   
Sbjct: 1380 CDASLTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDK----KSYKDLLA---EVSK--- 1429

Query: 187  MALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
                +   T  +        L+A I V++   +  A+V      G   DA  V+E + +
Sbjct: 1430 ----SMVDTGFKLNHELSSKLEASIEVEADVRLGCAIVDMFGKCGSPQDARKVFEGMDQ 1484


>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
          Length = 563

 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 98/437 (22%), Positives = 170/437 (38%), Gaps = 60/437 (13%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL    QM+   LVP + T N++L    +S  F    R++      N+K +  +F  MI 
Sbjct: 114 ALFYFNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFNE-TKGNVKLDVYSFGIMIK 172

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              ++   D  + +L  ++EM L P   +Y  ++ G  +  D++    +  +M + +V  
Sbjct: 173 GCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVA 232

Query: 150 DSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           +  T++ LI+       ++D I+ YE++K  G     Y + ++I      G+   A ++ 
Sbjct: 233 NQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELF 292

Query: 207 LDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
            +  E  V       + L+  L    R  +A  +   +K  G  L P  +          
Sbjct: 293 DEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDG--LSPNLI---------- 340

Query: 266 GELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMA---- 321
              N LI             DG C +         L  A+ L  Q+K   +   +A    
Sbjct: 341 -SYNTLI-------------DGYCSI-------GNLDKASSLFNQMKSSGQSPSLATYNI 379

Query: 322 MEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAH 381
           +   FSE       TD               +  GL PS+     L+ A V + ++++A 
Sbjct: 380 LIAGFSEAKNSAGVTDMVREM----------EARGLSPSKVTYTILMDALVRSDNIEKAF 429

Query: 382 LIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM------PKDDPHVRFVIQA 435
            I+   E AGL  ++  Y  +       G+ K ASKL   +      P D  +   +   
Sbjct: 430 QIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGY 489

Query: 436 CKQ--TYTIPSLQKERG 450
           CK+  +Y    L KE G
Sbjct: 490 CKEGSSYRALRLLKEMG 506



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 116/247 (46%), Gaps = 8/247 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           I P+  +Y  +I   C+  K++ A ++ ++M +  +  +  T N+++   C+E       
Sbjct: 265 IVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLE-A 323

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            R+   +    L PN  ++ ++I     I + D A SL + +K     P+ + YN ++AG
Sbjct: 324 ERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAG 383

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQIT 182
           +   K+  G   +++EME   + P   T++ L+       N E   + Y  ++ AG    
Sbjct: 384 FSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVAD 443

Query: 183 KYVFMALINAYTTCGEFEKARQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
            Y++  LI+     G+ ++A ++   LD E+ +K    + + ++      G +  A+ + 
Sbjct: 444 IYIYGVLIHGLCVVGDMKEASKLFKSLD-EMHLKPNDVIYNTMIYGYCKEGSSYRALRLL 502

Query: 241 EEIKEAG 247
           +E+ E G
Sbjct: 503 KEMGENG 509



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 65/152 (42%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           +PS A+Y  LI    +        D+V +M    L PS  T   ++ A   S       +
Sbjct: 371 SPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQ 430

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           IY  +    L  +   +  +I     + D   A  L   L EM+L P   +YN ++ GY 
Sbjct: 431 IYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYC 490

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159
           ++     AL +LKEM +  + P+  +++  I 
Sbjct: 491 KEGSSYRALRLLKEMGENGMVPNVASYNSTIQ 522


>gi|255549482|ref|XP_002515794.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545122|gb|EEF46633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 924

 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 127/311 (40%), Gaps = 39/311 (12%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTET----INSILHACEESYEF 62
             PS  SY  LI     + K+  AL+V + M    +  + +T    IN  L   + +  F
Sbjct: 477 FAPSVVSYGCLINLYAKVGKISKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWANAF 536

Query: 63  -------------------NLVRRIYPM------IC------HHNLKPNSETFRSMISLN 91
                              N++R    M      IC          +P S TF  +I   
Sbjct: 537 AIFEDVVKDGLKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIHGF 596

Query: 92  VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151
            +  +   A  + D ++    +PT   +NA++ G   K+ ++ A+ +L EM  A V P+ 
Sbjct: 597 ARAGEMKRALDVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPNE 656

Query: 152 QTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
            T++ ++H  +   D  K   Y+ +L+  G Q+  Y + AL+ A    G  + A  V  +
Sbjct: 657 HTYTTIMHGYAALGDTGKAFEYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKE 716

Query: 209 AEIPVKSRSE-VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
                  R+  V + L+   A  G   +A  + +++K+ G   +     + I      G+
Sbjct: 717 MSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQGGVKPDIHTYTSFINACCKAGD 776

Query: 268 LNRLIQLLEEV 278
           + R  +++EE+
Sbjct: 777 MLRASKMMEEM 787



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 73/375 (19%), Positives = 161/375 (42%), Gaps = 47/375 (12%)

Query: 31  LDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL 90
           L V E++ +    PS  +   +++   +  + +    +  M+    +K N +T+  +I+ 
Sbjct: 466 LTVFERLKECGFAPSVVSYGCLINLYAKVGKISKALEVSKMMESAGIKHNMKTYSMLING 525

Query: 91  NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD 150
            +K+KD+ +A+++ +D+ +  L P   +YN I+  +     +  A+ ++KEM++   +P 
Sbjct: 526 FLKLKDWANAFAIFEDVVKDGLKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPT 585

Query: 151 SQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVL 207
           S+TF  +IH  +   ++   +  ++ ++ +G   T + F ALI       + EKA +++ 
Sbjct: 586 SRTFMPIIHGFARAGEMKRALDVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILD 645

Query: 208 DAEIPVKSRSE-VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
           +  +   S +E   + ++   A+ G T  A   + ++++ G  L+     AL++     G
Sbjct: 646 EMALAGVSPNEHTYTTIMHGYAALGDTGKAFEYFTKLRDEGLQLDVYTYEALLKACCKSG 705

Query: 267 ELNRLIQLLEEVHDPDYWMDGCCRLIL--HCVRFKQLSSATDLLKQLKDKFKDDEMAMEY 324
            +   + + +E+   +   +     IL     R   +  A DL++Q+K            
Sbjct: 706 RMQSALAVTKEMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMK------------ 753

Query: 325 HFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIW 384
                                        + G+ P        + AC  A D+ RA  + 
Sbjct: 754 -----------------------------QGGVKPDIHTYTSFINACCKAGDMLRASKMM 784

Query: 385 KEYENAGLPYNVLSY 399
           +E E +G+  NV +Y
Sbjct: 785 EEMETSGVKPNVKTY 799



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/280 (20%), Positives = 110/280 (39%), Gaps = 39/280 (13%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P    Y  +I   C +  +  A+ +V++M +    P++ T   I+H    + E     
Sbjct: 547 LKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIHGFARAGEMKRAL 606

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++ M+      P   TF ++I   V+ +  + A  +LD++    + P    Y  IM GY
Sbjct: 607 DVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPNEHTYTTIMHGY 666

Query: 127 FRKKD-----------------------------------VQGALMVLKEMEQANVKPDS 151
               D                                   +Q AL V KEM   N+  ++
Sbjct: 667 AALGDTGKAFEYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNT 726

Query: 152 QTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
             ++ LI   +   D+ +     +Q+K  G +   + + + INA    G+  +A +++ +
Sbjct: 727 FVYNILIDGWARRGDVWEAADLMQQMKQGGVKPDIHTYTSFINACCKAGDMLRASKMMEE 786

Query: 209 AEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
            E   VK   +  + L+   A       A+  ++E+K AG
Sbjct: 787 METSGVKPNVKTYTTLIHGWARASLPEKALRCFQEMKLAG 826



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 96/484 (19%), Positives = 183/484 (37%), Gaps = 69/484 (14%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           PS   Y  +++Y      +H A    E M    + P++    S++HA     +       
Sbjct: 304 PSRREYGLMVSYYARRGDMHRARQTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSC 363

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    ++ +  T+  ++    KI + D+A     + K+ +    A +Y  ++  Y +
Sbjct: 364 ARKMKEEGVEMSLVTYSIIVGGFAKIGNADAADRWFKEAKDRHSHMNAIIYGNMIYAYCQ 423

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYV 185
             ++  A  +++EME   +      +  ++       NEE  +  +E+LK  G   +   
Sbjct: 424 TCNMDQAEALVREMEGEGIDAPIDIYHTMMDGYTMVGNEEKCLTVFERLKECGFAPSVVS 483

Query: 186 FMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +  LIN Y   G+  KA +V    E   +K   +  S L++        ++A  ++E++ 
Sbjct: 484 YGCLINLYAKVGKISKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDVV 543

Query: 245 EAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEV----HDPDYWM------------- 285
           + G  L+P  V+   +I      G ++R I +++E+    H P                 
Sbjct: 544 KDG--LKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIHGFARAGE 601

Query: 286 -------------DGCC-------RLILHCVRFKQLSSATDLLKQLKDKFKDDEMAM--- 322
                         GC         LIL  V  +Q+  A ++L         DEMA+   
Sbjct: 602 MKRALDVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEIL---------DEMALAGV 652

Query: 323 ---EYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKR 379
              E+ ++ I    A     D     +    ++DE GL       + LL AC  +  ++ 
Sbjct: 653 SPNEHTYTTIMHGYAALG--DTGKAFEYFTKLRDE-GLQLDVYTYEALLKACCKSGRMQS 709

Query: 380 AHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM------PKDDPHVRFVI 433
           A  + KE     +P N   Y  +   +   G+   A+ L+ +M      P    +  F+ 
Sbjct: 710 ALAVTKEMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQGGVKPDIHTYTSFIN 769

Query: 434 QACK 437
             CK
Sbjct: 770 ACCK 773



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/384 (17%), Positives = 155/384 (40%), Gaps = 43/384 (11%)

Query: 78  KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALM 137
           KP+   +  M+S   +  D   A    + ++   + PT+ +Y +++  Y   +D++ AL 
Sbjct: 303 KPSRREYGLMVSYYARRGDMHRARQTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALS 362

Query: 138 VLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYT 194
             ++M++  V+    T+S ++       N +   +++++ K     +   ++  +I AY 
Sbjct: 363 CARKMKEEGVEMSLVTYSIIVGGFAKIGNADAADRWFKEAKDRHSHMNAIIYGNMIYAYC 422

Query: 195 TCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPR 253
                ++A  +V + E   + +  ++   ++      G     + V+E +KE  C   P 
Sbjct: 423 QTCNMDQAEALVREMEGEGIDAPIDIYHTMMDGYTMVGNEEKCLTVFERLKE--CGFAPS 480

Query: 254 AVI--ALIEHLNSEGELNRLIQL--LEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLK 309
            V    LI      G++++ +++  + E     + M     LI   ++ K  ++A  + +
Sbjct: 481 VVSYGCLINLYAKVGKISKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWANAFAIFE 540

Query: 310 Q-LKDKFKDDEMAMEYHFSEIFCQIATTD------------------------------P 338
             +KD  K D + +  +    FC + T D                               
Sbjct: 541 DVVKDGLKPD-VVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIHGFARA 599

Query: 339 PDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLS 398
            +++  LD+   ++   G  P+    + L+   V  R +++A  I  E   AG+  N  +
Sbjct: 600 GEMKRALDVFDMMRRS-GCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPNEHT 658

Query: 399 YLWMYKAFLASGNRKSASKLLSKM 422
           Y  +   + A G+   A +  +K+
Sbjct: 659 YTTIMHGYAALGDTGKAFEYFTKL 682


>gi|219363531|ref|NP_001137052.1| uncharacterized protein LOC100217224 [Zea mays]
 gi|194698168|gb|ACF83168.1| unknown [Zea mays]
          Length = 338

 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 99/203 (48%), Gaps = 4/203 (1%)

Query: 10  SSASYKKLITYSC-DLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           ++AS+  LI   C D   +   L + E+M +  LVP+  T N+I+H   +    +  RRI
Sbjct: 79  TAASFNTLIAAYCHDSGGMETVLRLKERMEREGLVPNEVTYNTIVHGLCKEGRMHQARRI 138

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    + PN+ TF ++I   V + D + A  + +++ +  L      YNA++ G   
Sbjct: 139 VNEMRVKGVTPNTITFNTLIHSYVTLGDNEVAMKMHEEMMKAGLSADLVTYNALILGLCN 198

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYL-IHNC--SNEEDIIKYYEQLKSAGGQITKYV 185
           +     A  +++E+  A ++P++ TFS L I  C   N E  +     +K AG Q   Y 
Sbjct: 199 EGKTWKASQLVQELCAAKLEPNASTFSALIIGQCKKQNPERALDLLNAMKKAGFQPNYYT 258

Query: 186 FMALINAYTTCGEFEKARQVVLD 208
           +  LI+ ++   +FE A  V+ D
Sbjct: 259 YSILISTFSKNKDFEGAIDVLKD 281



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 75/145 (51%), Gaps = 2/145 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINS-ILHACEESYEFNLV 65
           +TP++ ++  LI     L    VA+ + E+M++  L     T N+ IL  C E   +   
Sbjct: 147 VTPNTITFNTLIHSYVTLGDNEVAMKMHEEMMKAGLSADLVTYNALILGLCNEGKTWK-A 205

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            ++   +C   L+PN+ TF ++I    K ++ + A  LL+ +K+    P    Y+ +++ 
Sbjct: 206 SQLVQELCAAKLEPNASTFSALIIGQCKKQNPERALDLLNAMKKAGFQPNYYTYSILIST 265

Query: 126 YFRKKDVQGALMVLKEMEQANVKPD 150
           + + KD +GA+ VLK+M    + PD
Sbjct: 266 FSKNKDFEGAIDVLKDMLMRCIAPD 290



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 82/169 (48%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  ++   C   ++H A  +V +M    + P+T T N+++H+     +  +  
Sbjct: 112 LVPNEVTYNTIVHGLCKEGRMHQARRIVNEMRVKGVTPNTITFNTLIHSYVTLGDNEVAM 171

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++  +    L  +  T+ ++I           A  L+ +L    L P AS ++A++ G 
Sbjct: 172 KMHEEMMKAGLSADLVTYNALILGLCNEGKTWKASQLVQELCAAKLEPNASTFSALIIGQ 231

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK 175
            +K++ + AL +L  M++A  +P+  T+S LI   S  +D     + LK
Sbjct: 232 CKKQNPERALDLLNAMKKAGFQPNYYTYSILISTFSKNKDFEGAIDVLK 280



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/209 (20%), Positives = 94/209 (44%), Gaps = 5/209 (2%)

Query: 75  HNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQG 134
           H + P  E+    IS  ++++  + A S   +++   + P     N +M        V  
Sbjct: 4   HGMFPTVESCNVFISGALRLRRPEIAISFFREMRRCRVSPNVYTVNMVMRAKCALGRVVD 63

Query: 135 ALMVLKEMEQANVKPDSQTFSYLI----HNCSNEEDIIKYYEQLKSAGGQITKYVFMALI 190
           A  +L EM        + +F+ LI    H+    E +++  E+++  G    +  +  ++
Sbjct: 64  AAQLLDEMPCWGFSRTAASFNTLIAAYCHDSGGMETVLRLKERMEREGLVPNEVTYNTIV 123

Query: 191 NAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
           +     G   +AR++V +  +  V   +   + L+ +  + G    A+ ++EE+ +AG +
Sbjct: 124 HGLCKEGRMHQARRIVNEMRVKGVTPNTITFNTLIHSYVTLGDNEVAMKMHEEMMKAGLS 183

Query: 250 LEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            +     ALI  L +EG+  +  QL++E+
Sbjct: 184 ADLVTYNALILGLCNEGKTWKASQLVQEL 212


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 82/409 (20%), Positives = 165/409 (40%), Gaps = 22/409 (5%)

Query: 28  HVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSM 87
           H+  D    ++      +T T+N ++H+  ++ +F  V  +   +    + P+  T   M
Sbjct: 141 HLTADAYRLVLSSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVM 200

Query: 88  ISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANV 147
           +    +  D ++A +L+D +    + P    YN+++ G  R      A  V + M+   V
Sbjct: 201 VDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGV 260

Query: 148 KPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYV--FMALINAYTTCGEFEKA 202
            PD ++F+ LI         E+ +++Y++++  G ++T  V  F  LI  +T  GE + A
Sbjct: 261 APDVRSFNMLIGGFCRAGELEEALRFYKEMR--GRRVTPDVVSFSCLIGLFTRRGEMDHA 318

Query: 203 RQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEH 261
            + + +  E  +     + + ++      G   +A+ V +E+   GC  +      L+  
Sbjct: 319 AEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNG 378

Query: 262 LNSEGELNRLIQLLEEVHDPDYWMDGC--CRLILHCVRFKQLSSATDLLKQLKDKFKDDE 319
           L  E  L+   +LL E+ +     D C    LI    R   +  A      + D+    +
Sbjct: 379 LCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPD 438

Query: 320 MAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELG---LPPSRKCLDFLLGACVNARD 376
           +       +  C+         Q  L     + D++    + P+      L+ +      
Sbjct: 439 IVTYNTLIDGMCR---------QGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQ 489

Query: 377 LKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKD 425
           +  A     E  N G+  N+++Y  + K +  SGN     + L KM  D
Sbjct: 490 VDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHD 538



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 1/160 (0%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           MH++ EI P+  +Y  LI   C+  +V  A   +++MV   +VP+  T NSI+     S 
Sbjct: 465 MHSR-EIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSG 523

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
             +  ++  P + H  + P+  T+ ++I   VK      A++LL  ++  N+ P A  YN
Sbjct: 524 NVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYN 583

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160
            I++G+    ++Q A  V K+M    ++PD  T+  +I+ 
Sbjct: 584 MIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSMING 623



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/237 (20%), Positives = 97/237 (40%), Gaps = 38/237 (16%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   ++  LI   C    +  AL   + +    L P   T N+++       +     
Sbjct: 400 VPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKAN 459

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +    + PN  T+  +I  + +    D+A++ LD++    ++P    YN+I+ GY
Sbjct: 460 ELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGY 519

Query: 127 FRKKDVQG-----------------------------------ALMVLKEMEQANVKPDS 151
            R  +V                                     A  +LK ME  NV+PD+
Sbjct: 520 CRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDA 579

Query: 152 QTFSYLIHNCS---NEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
            T++ +I   S   N ++    Y+++ + G +  +Y +M++IN +   G  +K+ Q+
Sbjct: 580 VTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSMINGHVVAGNSKKSFQL 636



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/275 (18%), Positives = 113/275 (41%), Gaps = 6/275 (2%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  L+   C   ++  A +++ +M +  + P   T  +++H            + 
Sbjct: 367 PDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQF 426

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  I    L+P+  T+ ++I    +  D   A  L DD+    + P    Y+ ++  +  
Sbjct: 427 FDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCE 486

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYV 185
           K  V  A   L EM    + P+  T++ +I       ++ K   +  +++          
Sbjct: 487 KGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLIT 546

Query: 186 FMALINAYTTCGEFEKARQV--VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
           +  LI+ Y   G+  +A  +  +++ E  V+  +   + ++S  + HG   +A  VY+++
Sbjct: 547 YNTLIHGYVKEGKMHEAFNLLKIMENE-NVQPDAVTYNMIISGFSVHGNMQEADWVYKKM 605

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
              G   +    +++I      G   +  QL +E+
Sbjct: 606 GARGIEPDRYTYMSMINGHVVAGNSKKSFQLHDEM 640



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/206 (19%), Positives = 85/206 (41%), Gaps = 3/206 (1%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +  + P    Y  +I   C    +  AL V ++MV    +P   T N++L+   +    +
Sbjct: 327 EFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLS 386

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               +   +    + P+  TF ++I    +  + + A    D + +  L P    YN ++
Sbjct: 387 DAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLI 446

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI-HNCSNEE--DIIKYYEQLKSAGGQ 180
            G  R+ D+  A  +  +M    + P+  T+S LI  +C   +  +   + +++ + G  
Sbjct: 447 DGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIV 506

Query: 181 ITKYVFMALINAYTTCGEFEKARQVV 206
                + ++I  Y   G   K +Q +
Sbjct: 507 PNIMTYNSIIKGYCRSGNVSKGQQFL 532


>gi|356557931|ref|XP_003547263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Glycine max]
          Length = 764

 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 111/233 (47%), Gaps = 14/233 (6%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL V  QM++  +  ST T+ S++ AC +   +NL   ++  +  H L  +  T  S+++
Sbjct: 353 ALAVFRQMLKFGVKSSTATMASVITACAQLGSYNLGTSVHGYMFRHELPMDIATQNSLVT 412

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           ++ K    D +  + D + + NL+     +NA++ GY +   V  AL +  EM   +  P
Sbjct: 413 MHAKCGHLDQSSIVFDKMNKRNLVS----WNAMITGYAQNGYVCKALFLFNEMRSDHQTP 468

Query: 150 DSQTFSYLIHNC--SNEEDIIKYYEQLKSAGG-QITKYVFMALINAYTTCGEFEKARQVV 206
           DS T   L+  C  + +  + K+        G +    V  +L++ Y  CG+ + A++  
Sbjct: 469 DSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCKCGDLDIAQRCF 528

Query: 207 LDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
              ++P  S   V  SA++     HG+   A+  Y +  E+G  ++P  VI L
Sbjct: 529 --NQMP--SHDLVSWSAIIVGYGYHGKGETALRFYSKFLESG--MKPNHVIFL 575



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 107/268 (39%), Gaps = 38/268 (14%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           S  ++++++     +LK HV  D               T  S+L AC     F+L   ++
Sbjct: 46  SQGAHRQVLATYASMLKTHVPSDAY-------------TFPSLLKACSSLNLFSLGLSLH 92

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
             I    L  ++    S+I+   K    D A  + D + E N++P    + +I+  Y R 
Sbjct: 93  QRILVSGLSLDAYIASSLINFYAKFGFADVARKVFDFMPERNVVP----WTSIIGCYSRT 148

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMAL 189
             V  A  +  EM +  ++P S T   L+   S           ++   G    Y FM+ 
Sbjct: 149 GRVPEAFSLFDEMRRQGIQPSSVTMLSLLFGVSE-------LAHVQCLHGSAILYGFMSD 201

Query: 190 IN-------AYTTCGEFEKARQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
           IN        Y  C   E +R++   +D    V   S     LVSA A  G   + +++ 
Sbjct: 202 INLSNSMLSMYGKCRNIEYSRKLFDYMDQRDLVSWNS-----LVSAYAQIGYICEVLLLL 256

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGEL 268
           + ++  G   +P+   +++    S GEL
Sbjct: 257 KTMRIQGFEPDPQTFGSVLSVAASRGEL 284



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 73/165 (44%), Gaps = 7/165 (4%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +IT       V  AL +  +M      P + TI S+L  C  + + +L + I+  +
Sbjct: 437 SWNAMITGYAQNGYVCKALFLFNEMRSDHQTPDSITIVSLLQGCASTGQLHLGKWIHSFV 496

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
             + L+P      S++ +  K  D D A    + +   +L+     ++AI+ GY      
Sbjct: 497 IRNGLRPCILVDTSLVDMYCKCGDLDIAQRCFNQMPSHDLVS----WSAIIVGYGYHGKG 552

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQL 174
           + AL    +  ++ +KP+   F  ++ +CS+    E  +  YE +
Sbjct: 553 ETALRFYSKFLESGMKPNHVIFLSVLSSCSHNGLVEQGLNIYESM 597


>gi|21537126|gb|AAM61467.1| unknown [Arabidopsis thaliana]
          Length = 766

 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 66/311 (21%), Positives = 135/311 (43%), Gaps = 40/311 (12%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
            P++ +Y  LI   C  +K+  A +VV +M + E+ P+  T+N+I+      +  N+   
Sbjct: 403 VPNAVTYNCLIDGYCRAVKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVV 462

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG-- 125
            +  +    +K N  T+ ++I     + + + A    + + E    P A +Y A+++G  
Sbjct: 463 FFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLC 522

Query: 126 ---------------------------------YFRKKDVQGALMVLKEMEQANVKPDSQ 152
                                            +  K + +    +L +ME+   KPDS 
Sbjct: 523 QVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSI 582

Query: 153 TFSYLIHNCSNEED---IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA 209
           T++ LI      +D   + +  EQ++  G   T   + A+I+AY + GE ++A ++  D 
Sbjct: 583 TYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDM 642

Query: 210 EI--PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
            +   V   + + + L++A +  G    A+ + EE+K            AL + LN + +
Sbjct: 643 GLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLNEKTQ 702

Query: 268 LNRLIQLLEEV 278
              L++L++E+
Sbjct: 703 GETLLKLMDEM 713



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 101/443 (22%), Positives = 176/443 (39%), Gaps = 75/443 (16%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETI-------NSILHAC 56
           +++I P   +   LI       +V  AL+V EQM +G+       I       N+++   
Sbjct: 322 EVKIRPDVVTLGILINTLSKSRRVDEALEVFEQM-RGKRTDDGNVIKADSIHFNTLIDGL 380

Query: 57  ------EESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEM 110
                 +E+ E  LVR    M       PN+ T+  +I    +    ++A  ++  +KE 
Sbjct: 381 CKVGRLKEAEEL-LVR----MKLEERCVPNAVTYNCLIDGYCRAVKLETAKEVVSRMKED 435

Query: 111 NLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDI 167
            + P     N I+ G  R   +  A++   +ME+  VK +  T+  LIH C   SN E  
Sbjct: 436 EIKPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKA 495

Query: 168 IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSAL 227
           + +YE++  AG                 C           DA+I          AL+S L
Sbjct: 496 MYWYEKMLEAG-----------------CSP---------DAKI--------YYALISGL 521

Query: 228 ASHGRTSDAIIVYEEIKEAGCNLEPRAVIALI----EHLNSEGELNRLIQLLEEVHDPDY 283
               R  DAI V E++KE G +L+  A   LI    +  N+E     L  + +E   PD 
Sbjct: 522 CQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDS 581

Query: 284 WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQI 343
                  LI    + K   S   +++Q+++   D  +       + +C +   D      
Sbjct: 582 ITYNT--LISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELD------ 633

Query: 344 GLDLLQFIKDELGL----PPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSY 399
             + L+  KD +GL     P+    + L+ A     +  +A  + +E +   +  NV +Y
Sbjct: 634 --EALKLFKD-MGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETY 690

Query: 400 LWMYKAFLASGNRKSASKLLSKM 422
             ++K        ++  KL+ +M
Sbjct: 691 NALFKCLNEKTQGETLLKLMDEM 713



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 93/194 (47%), Gaps = 19/194 (9%)

Query: 30  ALDVVEQMVQGELV--PSTETINSILHACEESYEFNLV--RRIYPMICH---HNLKPNSE 82
           A  V+++M+Q E V  P+  T + +LH   E ++  L+   +I  +I     H + PNS 
Sbjct: 204 AFKVLDEMLQKESVFPPNRITADIVLH---EVWKGRLLTEEKIIALISRFSSHGVSPNSV 260

Query: 83  TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM 142
                IS   K    ++A+ +L DL +      A  +NA+++   R  D+     ++ +M
Sbjct: 261 WLTRFISSLCKNARANAAWDILSDLMKNKTPLEAPPFNALLSCLGRNMDISRMNDLVLKM 320

Query: 143 EQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQL---KSAGGQITK---YVFMALINAY 193
           ++  ++PD  T   LI+  S     ++ ++ +EQ+   ++  G + K     F  LI+  
Sbjct: 321 DEVKIRPDVVTLGILINTLSKSRRVDEALEVFEQMRGKRTDDGNVIKADSIHFNTLIDGL 380

Query: 194 TTCGEFEKARQVVL 207
              G  ++A ++++
Sbjct: 381 CKVGRLKEAEELLV 394


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 125/272 (45%), Gaps = 17/272 (6%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +I+    +     A+ +  +M++    P+  ++ S+L AC E  +  L   +   +
Sbjct: 195 SWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFV 254

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
             + +  N     ++I +  K  D  SA  + D +K+ + +     +NA++ GY +    
Sbjct: 255 VENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVT----WNAMITGYAQNGMS 310

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSN--EEDIIKYYEQLKSAGG-QITKYVFMAL 189
           + A+ + ++M  ++  PD  T   ++  C++    D+ K  E   S  G Q   YV  AL
Sbjct: 311 EEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTAL 370

Query: 190 INAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGC 248
           ++ Y  CG  + A +V       +  ++EV  +A++SALA HG+  +A+ +++ +   G 
Sbjct: 371 VDMYAKCGSLDNAFRVFYG----MPKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGG 426

Query: 249 NLEPR-----AVIALIEHLNSEGELNRLIQLL 275
            + P       V++   H     E  RL  ++
Sbjct: 427 TVSPNDITFVGVLSACVHAGLVDEGRRLFHMM 458



 Score = 44.7 bits (104), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 105/234 (44%), Gaps = 29/234 (12%)

Query: 46  TETINSILHACEESYEFNLVRRIYPMICHHNL-KPNSETFRSMISLNVKIKDFDSAYSLL 104
           ++  NS+L  C        +++I+  +  +++ KPNS  ++        +KDF  A    
Sbjct: 32  SDKFNSLLQQC---LSIKQLKQIHAQLLTNSIHKPNSFLYKI-----ADLKDFAYASVFF 83

Query: 105 DDLKEMNLMPTASMYNAIMAGY---FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC 161
            ++    L PT   +N ++ G    + K  +  AL     M+   +KP++ T+ +L   C
Sbjct: 84  SNI----LDPTEYSFNVMIRGLSTAWNKSSL--ALEFYSRMKFLGLKPNNLTYPFLFIAC 137

Query: 162 SN----EEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRS 217
           SN    E   + +   ++  G     +V  +LI  Y  CG+   AR+V    EI  K   
Sbjct: 138 SNLLAVENGRMGHCSVIRR-GLDEDGHVSHSLITMYARCGKMGDARKVF--DEISQKDLV 194

Query: 218 EVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRL 271
              S ++S  +      +A+ ++ E+ EAG   +P   ++L+  L + GEL  L
Sbjct: 195 SWNS-MISGYSKMRHAGEAVGLFREMMEAG--FQPNE-MSLVSVLGACGELGDL 244


>gi|224124604|ref|XP_002319373.1| predicted protein [Populus trichocarpa]
 gi|222857749|gb|EEE95296.1| predicted protein [Populus trichocarpa]
          Length = 810

 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 125/268 (46%), Gaps = 13/268 (4%)

Query: 50  NSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKE 109
           N ++ A  ++  ++    ++  + +H   P+  T+ S+I +       D A  LLD+++E
Sbjct: 346 NVMVKAYGKAKLYDKAFSLFKGMRNHGTWPDEVTYNSLIQMFSGGDLMDQARDLLDEMQE 405

Query: 110 MNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEED 166
               P    ++A+MA Y R   +  A+ V +EM +A VKP+   +  LI+      N E+
Sbjct: 406 AGFKPQCLTFSAVMACYARLGQLSDAVDVYQEMVKAGVKPNEVVYGSLINGFAEVGNVEE 465

Query: 167 IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS-ALVS 225
            +KY+  ++ +G    + V  +LI  Y+  G F+ A+ +    +        + S +++S
Sbjct: 466 ALKYFRMMEESGIPANQIVLTSLIKVYSKLGCFDGAKHLYKKMKDLEGGPDIIASNSMIS 525

Query: 226 ALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWM 285
             A  G  S+A +V++ ++E G   +  +   ++    S G L+  I + EE+       
Sbjct: 526 LYADLGMISEAELVFKNLRENG-QADGVSFATMMYLYKSMGMLDEAIDIAEEMKQSG--- 581

Query: 286 DGCCRLILHCVRFKQLSSATDLLKQLKD 313
                L+  CV + ++ +      QL++
Sbjct: 582 -----LLRDCVSYNKVMACYATNGQLRE 604



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 79/408 (19%), Positives = 153/408 (37%), Gaps = 58/408 (14%)

Query: 46  TETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLD 105
           T T N+++    ++        ++  +    +  ++ TF +MI           A SLLD
Sbjct: 132 TSTYNTLIDLYGKAGRLKDAAEVFSEMLKSGVAMDTITFNTMIFTCGSHGLLSEAESLLD 191

Query: 106 DLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH-----N 160
            ++E  + P    YN  ++ Y    ++  AL    ++    + PD  +   ++H     N
Sbjct: 192 KMEERRISPDTRTYNIFLSLYADAGNINAALECYWKIRNVGLVPDIVSHRTILHILCGRN 251

Query: 161 CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK 220
              E + +   E++K +  +I  +    +I  Y   G  ++A  ++   +  V   S+V+
Sbjct: 252 MVREVEAV--IEEMKKSSQKIDVHSVPGIIKMYINEGLHDRANNLLDKCQFDVGFSSKVR 309

Query: 221 SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI----ALIEHLNSEGELNRLIQLLE 276
           +A++ A A  G  ++A  V+   ++    L P   +     +++        ++   L +
Sbjct: 310 AAIIDAYAERGLWAEAEAVFYGKRDL---LGPEKGVLEYNVMVKAYGKAKLYDKAFSLFK 366

Query: 277 EVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATT 336
            + +   W D      L      Q+ S  DL+ Q +D    DEM                
Sbjct: 367 GMRNHGTWPDEVTYNSL-----IQMFSGGDLMDQARDLL--DEM---------------- 403

Query: 337 DPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNAR--DLKRAHLIWKEYENAGLPY 394
                            E G  P  +CL F       AR   L  A  +++E   AG+  
Sbjct: 404 ----------------QEAGFKP--QCLTFSAVMACYARLGQLSDAVDVYQEMVKAGVKP 445

Query: 395 NVLSYLWMYKAFLASGNRKSASKLLSKMPKDD-PHVRFVIQACKQTYT 441
           N + Y  +   F   GN + A K    M +   P  + V+ +  + Y+
Sbjct: 446 NEVVYGSLINGFAEVGNVEEALKYFRMMEESGIPANQIVLTSLIKVYS 493



 Score = 42.0 bits (97), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 35/173 (20%), Positives = 77/173 (44%), Gaps = 4/173 (2%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   ++  ++     L ++  A+DV ++MV+  + P+     S+++   E        + 
Sbjct: 410 PQCLTFSAVMACYARLGQLSDAVDVYQEMVKAGVKPNEVVYGSLINGFAEVGNVEEALKY 469

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           + M+    +  N     S+I +  K+  FD A  L   +K++   P     N++++ Y  
Sbjct: 470 FRMMEESGIPANQIVLTSLIKVYSKLGCFDGAKHLYKKMKDLEGGPDIIASNSMISLYAD 529

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFS---YLIHNCSNEEDIIKYYEQLKSAG 178
              +  A +V K + + N + D  +F+   YL  +    ++ I   E++K +G
Sbjct: 530 LGMISEAELVFKNLRE-NGQADGVSFATMMYLYKSMGMLDEAIDIAEEMKQSG 581



 Score = 38.5 bits (88), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 67/310 (21%), Positives = 119/310 (38%), Gaps = 52/310 (16%)

Query: 72  ICHHNLKPNSE----TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +   NL+ N +    +F +M+ L   +   D A  + +++K+  L+     YN +MA Y 
Sbjct: 538 LVFKNLRENGQADGVSFATMMYLYKSMGMLDEAIDIAEEMKQSGLLRDCVSYNKVMACYA 597

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFM 187
               ++    +L EM    + PD  TF  L           +   QL+SA  +   Y   
Sbjct: 598 TNGQLRECAELLHEMIGQKLLPDGGTFKILFTVLKKGGFPSEGIAQLESAYLEGKPYARQ 657

Query: 188 ALIN-----------AYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDA 236
           A+I            A  +C  F KA +V LD        S   +  + A  S G    A
Sbjct: 658 AVITSIFSVVGLHALALESCESFTKA-EVALD--------SFAYNVAIYAYGSSGEIDKA 708

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCV 296
           +  + + ++ G  LEP     L+  +N           L   +     ++G  R I   +
Sbjct: 709 LKTFMKRQDEG--LEPD----LVTSIN-----------LVHCYGKAGMVEGVKR-IYSQL 750

Query: 297 RFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELG 356
           ++ ++     L+K + D +K+   A  +  +E+  Q       D++ G D  Q+   E+ 
Sbjct: 751 KYGEIKPNDSLVKAVVDAYKN---ANRHDLAELVNQ-------DIRFGFDSQQYSDSEIE 800

Query: 357 LPPSRKCLDF 366
                  L F
Sbjct: 801 AGSDESSLGF 810


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 126/284 (44%), Gaps = 6/284 (2%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQ--GELVPSTETINSILHACEESY 60
            +L   P+  SY  L+   CD  +   AL++++ M    G+  P   +  ++++   +  
Sbjct: 154 TQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEG 213

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           + +     Y  +    + PN  T+ S+I+   K +  D A  +L  + +  +MP    YN
Sbjct: 214 DLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYN 273

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI-HNCSNEE--DIIKYYEQLKSA 177
           +I+ GY      + A+  LK+M    V+PD  T++ L+ + C N    +  K ++ +   
Sbjct: 274 SIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKR 333

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDA 236
           G +     +  L+  Y T G   +   ++ L     +     V S L+ A A  G+   A
Sbjct: 334 GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQA 393

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           ++V+ ++++ G N +      +I  L   G +   ++  E++ D
Sbjct: 394 MLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID 437



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 78/189 (41%), Gaps = 35/189 (18%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA----------- 55
           + P + +Y  +I   C   +V  A+   EQM+   L P     NS++H+           
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAK 464

Query: 56  -----------CEESYEFNLV-------------RRIYPMICHHNLKPNSETFRSMISLN 91
                      C ++  FN +              +++ ++    +KPN  T+ ++I   
Sbjct: 465 ELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGY 524

Query: 92  VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151
                 D A  LL  +  + + P    YN ++ GY +   ++ AL++ +EME + V PD 
Sbjct: 525 CLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDI 584

Query: 152 QTFSYLIHN 160
            T++ ++  
Sbjct: 585 ITYNIILQG 593



 Score = 45.4 bits (106), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 103/261 (39%), Gaps = 10/261 (3%)

Query: 1   MHAKLE------ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILH 54
           MH  L+      I P+   +  LI       KV  A+ V  +M Q  L P T T  +++ 
Sbjct: 358 MHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIG 417

Query: 55  ACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMP 114
              +S       R +  +    L P +  + S+I        +D A  L+ ++ +  +  
Sbjct: 418 ILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL 477

Query: 115 TASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYY 171
               +N+I+  + ++  V  +  +   M +  VKP+  T+S LI         ++  K  
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLL 537

Query: 172 EQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASH 230
             + S G +     +  LIN Y      E A  +  + E    S   +  + ++  L   
Sbjct: 538 ASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQT 597

Query: 231 GRTSDAIIVYEEIKEAGCNLE 251
            RT+ A  +Y  I E+G  LE
Sbjct: 598 RRTAAAKELYVGITESGTQLE 618


>gi|428179078|gb|EKX47950.1| hypothetical protein GUITHDRAFT_136922 [Guillardia theta CCMP2712]
          Length = 714

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 86/439 (19%), Positives = 199/439 (45%), Gaps = 29/439 (6%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  L+    ++ K   + D++ ++    ++    T ++++    ++ +++L  
Sbjct: 267 LRPDIVTYNSLLGVYMEMGKWKESYDILFEIEDQHVITDVITYSTLISTFAKTRKYSLAI 326

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +Y  +    + PN  T+ S+I   ++  +F  A++  DD++   + P    Y+ ++A  
Sbjct: 327 EMYEKMMERQVMPNVITYNSLIFACLRANNFSQAFAFFDDMQAQGISPNVVTYSTMIASC 386

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITK 183
             K +   A  +  EM +  + PD  TFS L+  C +    E  +   E ++ AG Q+  
Sbjct: 387 RSKDNWVTAFDLFLEMIRKEIPPDPMTFSALLSVCQHSKQWEQAMDVLEWMQDAGIQLNI 446

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
            ++ A+++     G  + A +++ + +   +K    + +AL+ A         A  V E 
Sbjct: 447 RMYSAVVHVCGQAGRLDDAFRILDECKRDGIKPNVIMFTALIHACKVARDLDRAFRVLEL 506

Query: 243 IKEAGCNLEPRAV-----IALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVR 297
           +KE   ++ P  V     +   E + +     +++ LL+E +     +     LI  CVR
Sbjct: 507 MKED--HVTPNLVTFNVLLGTCEVVGNSTCAFQVVGLLQE-YGFRANLQTFNTLIKTCVR 563

Query: 298 FKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLL--QFIKDE- 354
             +   A ++  Q++ +     ++     S     +A  +  D +  +D++    IK E 
Sbjct: 564 SHEWQKAFEVYSQMQLQRIRPSLSTFNALS-----MAAEEGGDWRRAIDVMVDMRIKTEK 618

Query: 355 -----LGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLAS 409
                 G  PS +  + L+ ACV + + ++A  ++K  + +G+  N+++Y  +    + S
Sbjct: 619 ILIRMAGHTPSVQAYNSLISACVKSSNYQKAFDVYKGMKTSGVRANIVTYNLIIS--ILS 676

Query: 410 GNRKSAS--KLLSKMPKDD 426
           G RK +   K++++M +++
Sbjct: 677 GQRKLSEVLKVINEMKQEE 695



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 58/286 (20%), Positives = 125/286 (43%), Gaps = 13/286 (4%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           EI P   ++  L++      +   A+DV+E M    +  +    ++++H C ++   +  
Sbjct: 406 EIPPDPMTFSALLSVCQHSKQWEQAMDVLEWMQDAGIQLNIRMYSAVVHVCGQAGRLDDA 465

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            RI        +KPN   F ++I      +D D A+ +L+ +KE ++ P    +N ++  
Sbjct: 466 FRILDECKRDGIKPNVIMFTALIHACKVARDLDRAFRVLELMKEDHVTPNLVTFNVLLGT 525

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQIT 182
                +   A  V+  +++   + + QTF+ LI  C    +  K +E   Q++    + +
Sbjct: 526 CEVVGNSTCAFQVVGLLQEYGFRANLQTFNTLIKTCVRSHEWQKAFEVYSQMQLQRIRPS 585

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKS----------RSEVKSALVSALASHGR 232
              F AL  A    G++ +A  V++D  I  +             +  ++L+SA      
Sbjct: 586 LSTFNALSMAAEEGGDWRRAIDVMVDMRIKTEKILIRMAGHTPSVQAYNSLISACVKSSN 645

Query: 233 TSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
              A  VY+ +K +G          +I  L+ + +L+ +++++ E+
Sbjct: 646 YQKAFDVYKGMKTSGVRANIVTYNLIISILSGQRKLSEVLKVINEM 691



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 94/444 (21%), Positives = 184/444 (41%), Gaps = 81/444 (18%)

Query: 7   ITPSSASYKKLIT---YSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           + P   SY  +++   +S D+  V V L  + + V  ++V    + N+ L AC+   ++ 
Sbjct: 117 VEPDIVSYNTVLSALRHSPDIQNVFVMLKRMREKVSPDIV----SFNTALAACQRQCDWE 172

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               I  M+    ++ +  TF ++ISL  +   +D A++L +++   N+ P    +NA++
Sbjct: 173 SGVAILEMMSEDQIERDVFTFSTLISLCDRCGKYDEAFALKEEMDAKNVSPNIYTFNALI 232

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK 183
           A    K  +  +LM  K       + ++ T + ++            + + K+AG +   
Sbjct: 233 A--VCKNSLATSLMSRK-------RQNTLTIAQIL------------FAEAKAAGLRPDI 271

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             + +L+  Y   G+++++  ++ + E   V +     S L+S  A   + S AI +YE+
Sbjct: 272 VTYNSLLGVYMEMGKWKESYDILFEIEDQHVITDVITYSTLISTFAKTRKYSLAIEMYEK 331

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLS 302
           + E       R V+  +   NS                          LI  C+R    S
Sbjct: 332 MME-------RQVMPNVITYNS--------------------------LIFACLRANNFS 358

Query: 303 SATDLLKQLKDKFKDDEMA--MEYHFSEIFCQIATTDPPDVQI-GLDL-LQFIKDELGLP 358
            A          F DD  A  +  +       IA+    D  +   DL L+ I+ E  +P
Sbjct: 359 QAF--------AFFDDMQAQGISPNVVTYSTMIASCRSKDNWVTAFDLFLEMIRKE--IP 408

Query: 359 PSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKL 418
           P       LL  C +++  ++A  + +  ++AG+  N+  Y  +      +G    A ++
Sbjct: 409 PDPMTFSALLSVCQHSKQWEQAMDVLEWMQDAGIQLNIRMYSAVVHVCGQAGRLDDAFRI 468

Query: 419 LSKMPKDD--PHVRF---VIQACK 437
           L +  +D   P+V     +I ACK
Sbjct: 469 LDECKRDGIKPNVIMFTALIHACK 492



 Score = 45.4 bits (106), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 40/250 (16%), Positives = 105/250 (42%), Gaps = 13/250 (5%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A  ++++  +  + P+     +++HAC+ + + +   R+  ++   ++ PN  TF  ++ 
Sbjct: 465 AFRILDECKRDGIKPNVIMFTALIHACKVARDLDRAFRVLELMKEDHVTPNLVTFNVLLG 524

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
               + +   A+ ++  L+E         +N ++    R  + Q A  V  +M+   ++P
Sbjct: 525 TCEVVGNSTCAFQVVGLLQEYGFRANLQTFNTLIKTCVRSHEWQKAFEVYSQMQLQRIRP 584

Query: 150 DSQTFSYLIHNCSNEEDIIKYYEQL------------KSAGGQITKYVFMALINAYTTCG 197
              TF+ L        D  +  + +            + AG   +   + +LI+A     
Sbjct: 585 SLSTFNALSMAAEEGGDWRRAIDVMVDMRIKTEKILIRMAGHTPSVQAYNSLISACVKSS 644

Query: 198 EFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI 256
            ++KA  V    +   V++     + ++S L+   + S+ + V  E+K+     +   + 
Sbjct: 645 NYQKAFDVYKGMKTSGVRANIVTYNLIISILSGQRKLSEVLKVINEMKQEEVTPDSETIA 704

Query: 257 ALIEHLNSEG 266
            +I+ + ++ 
Sbjct: 705 LMIDAVQAQS 714


>gi|384249299|gb|EIE22781.1| hypothetical protein COCSUDRAFT_47692 [Coccomyxa subellipsoidea
           C-169]
          Length = 1226

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 5/184 (2%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           ++ SY  LI+       +   LD   QMVQ     S  T +S++ ACE+S E+ L  R +
Sbjct: 275 NTTSYNALISAHSKAGDLPQVLDTYRQMVQQGCERSVITYSSLISACEKSGEWQLALRFF 334

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
                 N +PN  TF S+I+   +   ++ A  L + +++    P    Y A+++ Y R 
Sbjct: 335 DECLKDNCRPNVITFNSLITACAQGAQWEKARELFELMQQQGCTPDVVTYTALISAYERG 394

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIH-----NCSNEEDIIKYYEQLKSAGGQITKY 184
              Q AL   + M+    KPDS  ++ +I       C+  +       +  SAGG + + 
Sbjct: 395 GKWQLALQAFQAMQAKGCKPDSIVYNAIIDTLWDTGCAWPQRQAAVLHRRASAGGLLRRA 454

Query: 185 VFMA 188
              A
Sbjct: 455 AHAA 458



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/317 (19%), Positives = 132/317 (41%), Gaps = 20/317 (6%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y   I+      ++  AL++   M +  +  +  T +++++ C +  +  L   ++  +
Sbjct: 138 TYTAAISICVSAQQLERALELSADMQRRGVQRNVHTHSALMNVCIKCGQLKLALDVWEDM 197

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               + PN  T+ ++I +  K+  ++ A  +L  +K   + P    YN +M         
Sbjct: 198 QRDGIVPNVVTYNTLIDVYGKLGQWEQALQVLRRMKFQGIEPVTRTYNTLMIACNTSGQW 257

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKYYEQLKSAGGQITKYVFMAL 189
           Q AL + +EM  A    ++ +++ LI   S   D   ++  Y Q+   G + +   + +L
Sbjct: 258 QTALQLYEEMRAAGHALNTTSYNALISAHSKAGDLPQVLDTYRQMVQQGCERSVITYSSL 317

Query: 190 INAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEIKEAG 247
           I+A    GE++ A +   D  +    R  V +  +L++A A   +   A  ++E +++ G
Sbjct: 318 ISACEKSGEWQLALR-FFDECLKDNCRPNVITFNSLITACAQGAQWEKARELFELMQQQG 376

Query: 248 CNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPD----------YWMDGCCRLIL 293
           C  +     ALI      G+    +Q  + +      PD           W  GC     
Sbjct: 377 CTPDVVTYTALISAYERGGKWQLALQAFQAMQAKGCKPDSIVYNAIIDTLWDTGCAWPQR 436

Query: 294 HCVRFKQLSSATDLLKQ 310
                 + +SA  LL++
Sbjct: 437 QAAVLHRRASAGGLLRR 453



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 47/234 (20%), Positives = 100/234 (42%), Gaps = 17/234 (7%)

Query: 43  VPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYS 102
           +P+ E I +   AC    +      +   +    L   ++ F            FD   +
Sbjct: 76  LPAREPIGATAAACLPGLDSRACAALLKELARTGLAHRAQEF------------FDHVLA 123

Query: 103 LLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH--- 159
           L D  +   L    + Y A ++     + ++ AL +  +M++  V+ +  T S L++   
Sbjct: 124 LGDSTEAARLADVYT-YTAAISICVSAQQLERALELSADMQRRGVQRNVHTHSALMNVCI 182

Query: 160 NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEI-PVKSRSE 218
            C   +  +  +E ++  G       +  LI+ Y   G++E+A QV+   +   ++  + 
Sbjct: 183 KCGQLKLALDVWEDMQRDGIVPNVVTYNTLIDVYGKLGQWEQALQVLRRMKFQGIEPVTR 242

Query: 219 VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLI 272
             + L+ A  + G+   A+ +YEE++ AG  L   +  ALI   +  G+L +++
Sbjct: 243 TYNTLMIACNTSGQWQTALQLYEEMRAAGHALNTTSYNALISAHSKAGDLPQVL 296


>gi|222625337|gb|EEE59469.1| hypothetical protein OsJ_11675 [Oryza sativa Japonica Group]
          Length = 1095

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 117/262 (44%), Gaps = 21/262 (8%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P + +Y  L+   C   KV  AL +++ M++  LVP T     +L+      +     
Sbjct: 680 ILPDTYTYTILLDGFCKRGKVVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAAS 739

Query: 67  RIYP-MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            ++  +IC   L  +   + SM++  +K    +    L+ ++ E  + P+++ YN +M G
Sbjct: 740 YMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMHG 799

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQIT 182
           Y +K  +   L + ++M +  +KPD+ T+  LI         E  +K+ E++   G    
Sbjct: 800 YIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEGVFPD 859

Query: 183 KYVFMALINAYTTCGEFEKARQVV--------LDAEIPVKSR--------SEV-KSALVS 225
              F  LI A++   +   A Q+         +D    +K          SEV +S++V 
Sbjct: 860 NLAFDILIKAFSEKSKMSNALQLFSYMKWVGDIDGAFELKEDMKALGVVPSEVAESSIVR 919

Query: 226 ALASHGRTSDAIIVYEEIKEAG 247
            L   G+  +AIIV+  I  AG
Sbjct: 920 GLCKCGKVEEAIIVFSSIMRAG 941



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/259 (21%), Positives = 113/259 (43%), Gaps = 42/259 (16%)

Query: 43  VPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYS 102
           +P+  T N+IL+   +        RI   +  + ++ +  T+  MI    K+K    AY 
Sbjct: 261 LPNAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYL 320

Query: 103 LLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS 162
           LL  ++E+NL P    YN ++ G+F +  +  A+ +  +M + ++KP   T++       
Sbjct: 321 LLKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYT------- 373

Query: 163 NEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-S 221
                                    ALI+ Y   G  ++AR+V+ + +I     SE+  S
Sbjct: 374 -------------------------ALIDGYCRNGRTDEARRVLYEMQITGVRPSELTYS 408

Query: 222 ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE----E 277
           AL++    H +   A+ + + ++    ++       LI+     GE+++  Q+L+    +
Sbjct: 409 ALLNGYCKHSKLGPALDLIKYLRSRSISINRTMYTILIDGFCQLGEVSKAKQILKCMLAD 468

Query: 278 VHDPDY-----WMDGCCRL 291
             DPD       ++G C++
Sbjct: 469 GIDPDVITYSALINGMCKM 487



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 47/239 (19%), Positives = 106/239 (44%), Gaps = 4/239 (1%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  +I   C L +   A  ++++M +  L P   + N+++H      + NL   I+  +
Sbjct: 301 TYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQM 360

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
              +LKP+  T+ ++I    +    D A  +L +++   + P+   Y+A++ GY +   +
Sbjct: 361 LRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPSELTYSALLNGYCKHSKL 420

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK---SAGGQITKYVFMAL 189
             AL ++K +   ++  +   ++ LI       ++ K  + LK   + G       + AL
Sbjct: 421 GPALDLIKYLRSRSISINRTMYTILIDGFCQLGEVSKAKQILKCMLADGIDPDVITYSAL 480

Query: 190 INAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           IN     G   + ++++   +   V   + + + LV      G   +A+  + +I  +G
Sbjct: 481 INGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSG 539



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/284 (19%), Positives = 109/284 (38%), Gaps = 60/284 (21%)

Query: 7    ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
            I P + +Y+ LI   C+   + +A+  +E+MV   + P     + ++ A  E        
Sbjct: 821  IKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSE-------- 872

Query: 67   RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
                       K        + S    + D D A+ L +D+K + ++P+    ++I+ G 
Sbjct: 873  -----------KSKMSNALQLFSYMKWVGDIDGAFELKEDMKALGVVPSEVAESSIVRGL 921

Query: 127  FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITK 183
             +   V+ A++V   + +A + P   TF+ L+H    E   +D     + ++S G ++  
Sbjct: 922  CKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESCGLKVDV 981

Query: 184  YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
              +                                  + L++ L +     DA+ +YEE+
Sbjct: 982  VTY----------------------------------NVLITGLCNKKCICDALDLYEEM 1007

Query: 244  KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDY 283
            K  G        I L   + + G +    +LL+++ D    P Y
Sbjct: 1008 KSKGLLPNITTYITLTGAMYATGTMQDGEKLLKDIEDRGIVPSY 1051



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/281 (18%), Positives = 116/281 (41%), Gaps = 5/281 (1%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           ++++I+   AS+  +I   C    V  A  V + MV+    P   T  S+L    +    
Sbjct: 571 SRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHL 630

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
              +     +       + +T  +++    K    D A  L + +   N++P    Y  +
Sbjct: 631 VQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTIL 690

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI----IKYYEQLKSAG 178
           + G+ ++  V  AL++L+ M +  + PD+  ++ L++   NE  +      + E +   G
Sbjct: 691 LDGFCKRGKVVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEG 750

Query: 179 GQITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAI 237
                  + +++N Y   G+  +  +++ +  E  V   S   + L+      G+ S  +
Sbjct: 751 LYADCIAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTL 810

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            +Y ++ + G   +      LI  L   G +   ++ LE++
Sbjct: 811 YLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKM 851



 Score = 45.1 bits (105), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 28/145 (19%), Positives = 64/145 (44%)

Query: 5    LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
            L + PS  +   ++   C   KV  A+ V   +++  +VP+  T  +++H   + ++ + 
Sbjct: 905  LGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDD 964

Query: 65   VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
               +  ++    LK +  T+  +I+     K    A  L +++K   L+P  + Y  +  
Sbjct: 965  AFHLKQLMESCGLKVDVVTYNVLITGLCNKKCICDALDLYEEMKSKGLLPNITTYITLTG 1024

Query: 125  GYFRKKDVQGALMVLKEMEQANVKP 149
              +    +Q    +LK++E   + P
Sbjct: 1025 AMYATGTMQDGEKLLKDIEDRGIVP 1049


>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic [Vitis vinifera]
          Length = 867

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/286 (20%), Positives = 132/286 (46%), Gaps = 13/286 (4%)

Query: 5   LEITPSSASYKKLITYSCDL-------LKVHVALDVVEQMVQGELVPSTETINSILHACE 57
            E   SS     L+TY+  +       +  + A ++ ++M++  + P   T NS+L  C 
Sbjct: 243 FETMKSSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCG 302

Query: 58  ESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTAS 117
               +   R ++  + +  ++ +  T+ +++    K    D A+ ++ ++   ++MP   
Sbjct: 303 RGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVV 362

Query: 118 MYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQL 174
            Y+ ++ GY +   +  AL +  EM+ A++  D  +++ L+         E+ +   +++
Sbjct: 363 TYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEM 422

Query: 175 KSAGGQITKYVFMALINAYTTCGEFEKARQVV--LDAEIPVKSRSEVKSALVSALASHGR 232
           +S+G +     + AL+  Y   G++E+ ++V   + AE  +       S L+   +  G 
Sbjct: 423 ESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAE-RIFPNLLTYSTLIDVYSKGGL 481

Query: 233 TSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
             +A+ V+ E K+AG   +     ALI+ L   G +   +  L+E+
Sbjct: 482 YQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEM 527



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/146 (21%), Positives = 70/146 (47%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           SY  L++    L +   AL+V ++M    +     T N++L    +  ++  V+R++  +
Sbjct: 398 SYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEM 457

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               + PN  T+ ++I +  K   +  A  +  + K+  L     +Y+A++    +   V
Sbjct: 458 KAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLV 517

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLI 158
           + A+  L EM +  ++P+  T++ +I
Sbjct: 518 ESAVSFLDEMTKEGIRPNVVTYNSII 543


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 122/272 (44%), Gaps = 4/272 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  L+   C +     A++VV+ M+ G L P   T NS++    +  E     +I
Sbjct: 306 PDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKI 365

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +   +  PN+ T+ ++IS   K    D A  +   L    ++P    +N+++ G   
Sbjct: 366 LDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCL 425

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYV 185
             + + A+ + +EM+    +PD  T++ LI + CS+   E+ +   ++++  G      +
Sbjct: 426 SSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVI 485

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIK 244
           +  LI+ +      E+A ++  + E+   SR  V  + L+  L    R  DA  + +++ 
Sbjct: 486 YNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMI 545

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276
             G   +     +L+ H    G++ +   +++
Sbjct: 546 MEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQ 577



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 69/337 (20%), Positives = 141/337 (41%), Gaps = 7/337 (2%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           +P++ +Y  +I+  C   +V  A ++   +    ++P   T NS++     S        
Sbjct: 375 SPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMD 434

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           ++  +     +P+  T+  +I      +  + A +LL +++         +YN ++ G+ 
Sbjct: 435 LFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFC 494

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKY 184
           + K ++ A  +  EME   V  DS T++ LI   C ++  ED  +  +Q+   G +  K+
Sbjct: 495 KNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKF 554

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSA-LVSALASHGRTSDAIIVYEEI 243
            + +L+  +   G+ +KA  +V        +   V  A L+S L   GR   A  +   I
Sbjct: 555 TYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSI 614

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILH---CVRFKQ 300
           +  G  L P A   +I+ L      +  ++L  E+ D     D     I++   C     
Sbjct: 615 QMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKIVYRGLCNGGGP 674

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTD 337
           +  A D   ++ ++    E +     +E  C ++  D
Sbjct: 675 IGEAVDFTVEMIERGNIPEFSSFVMLAEGLCTLSMDD 711



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 87/466 (18%), Positives = 186/466 (39%), Gaps = 59/466 (12%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M  +  I P +  Y  L+    D  K+ +       MV+  +     T N ++ A  +++
Sbjct: 158 MEDEYRIKPDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRIRHDVSTFNILIKALCKAH 217

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           +      +   +  + L P+  TF +++   ++  + D A  + + + E     T    N
Sbjct: 218 QVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVN 277

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSA 177
            ++ G+ ++  +  AL  ++E      +PD  T++ L++      + +  ++  + +   
Sbjct: 278 VLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLG 337

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLDAEIP--VKSRSEVKSALVSALASHGR--- 232
           G     Y + +LI+     GE E+A + +LD  +       +   +A++S+L    R   
Sbjct: 338 GLDPDIYTYNSLISGLCKLGEIEEAVK-ILDQMVSRDCSPNAVTYNAIISSLCKENRVDE 396

Query: 233 --------TSDAII------------------------VYEEIKEAGCNLEPRAVIALIE 260
                   TS  I+                        ++EE+K  GC  +      LI+
Sbjct: 397 ATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLID 456

Query: 261 HLNSEGELNRLIQLLEEVHDPDYWMDGCCR-------LILHCVRFKQLSSATDLLKQLKD 313
            L S  +L   + LL+E+      ++GC R       LI    + K++  A ++  +++ 
Sbjct: 457 SLCSSRKLEEALNLLKEME-----LNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMEL 511

Query: 314 KFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVN 373
           +    +        +  C+    +  D    +D  Q I +  GL P +   + LL     
Sbjct: 512 QGVSRDSVTYNTLIDGLCKSKRVE--DAAQLMD--QMIME--GLRPDKFTYNSLLTHFCK 565

Query: 374 ARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLL 419
             D+K+A  I +   ++G   ++++Y  +      +G  + AS+LL
Sbjct: 566 TGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLL 611



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 15/180 (8%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSIL-HACEESYEFNLV 65
           ++  S +Y  LI   C   +V  A  +++QM+   L P   T NS+L H C+   +    
Sbjct: 514 VSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTG-DIKKA 572

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             I   +      P+  T+ ++IS   K      A  LL  ++   ++ T   YN ++  
Sbjct: 573 ADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQA 632

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYV 185
            F++     A+ + +EM   +  PD+ T+  +             Y  L + GG I + V
Sbjct: 633 LFKRNRTHEAMRLFREMLDKSEPPDAITYKIV-------------YRGLCNGGGPIGEAV 679


>gi|242084242|ref|XP_002442546.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
 gi|241943239|gb|EES16384.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
          Length = 735

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 134/294 (45%), Gaps = 5/294 (1%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A +++ +M+     P   T ++++       E +  R++   +  +  KPN+ T  ++++
Sbjct: 355 AKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTALLN 414

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              K+     A+ LL+  +E    P+A  Y+ +M G+ R+  ++ +  V+ +M Q    P
Sbjct: 415 GLCKVGKSSEAWELLNKSEEEWWTPSAITYSVVMHGFRREGKLKESCDVVMQMLQKGFFP 474

Query: 150 DSQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
            +   + LIH   NE    D   + EQ +S G  I    F  +I+ ++  G+ E A  ++
Sbjct: 475 TTVEINLLIHALCNERKPADAKDFMEQCQSKGCFINVVNFTTVIHGFSRQGDLESALSLL 534

Query: 207 LDAEIPVK-SRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
            D  +  +       + +V AL   G+  +A  + E++   G +  P     +I     +
Sbjct: 535 DDMYLTNRHPDVVTYTVVVDALGRKGKMKEATSLVEKMLNRGLHPTPVTYRTVIHRYCEK 594

Query: 266 GELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLL-KQLKDKFKDD 318
           G +  L+ LL+++   + +     ++I     F +LS A +LL K L+   K D
Sbjct: 595 GAVEDLLNLLDKMLAKEGFSSAYNQVIEKLCAFGKLSEANNLLSKVLRTASKRD 648



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/216 (20%), Positives = 98/216 (45%), Gaps = 6/216 (2%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVRRIYPMICHHNLKPNSETF 84
           ++  AL+  E+M +  + P   T N ++   C      + +  I  M+  +   P+  ++
Sbjct: 211 RIDKALEFAERMRRVGVDPDVVTYNCLIKGLCGARRIVDALEMISSML-QNGCLPDKISY 269

Query: 85  RSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQ 144
            +++S   K K      +LL+ + +  + P    YN ++ G  +      AL  L+E E 
Sbjct: 270 FTVMSFLCKEKRVADVQNLLERMSDAGIFPDQVTYNMLIHGLAKHGHADEALSFLRESEG 329

Query: 145 ANVKPDSQTFSYLIHN-CSNEE--DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEK 201
              + D   +S  +H+ C N    +  +   ++ S G +     + A+++ +   GE ++
Sbjct: 330 KRFRVDEVGYSATVHSFCLNGRMAEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQ 389

Query: 202 ARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDA 236
           AR+++    +   K  +   +AL++ L   G++S+A
Sbjct: 390 ARKMMKHMYKNGCKPNTVTHTALLNGLCKVGKSSEA 425



 Score = 45.4 bits (106), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 67/343 (19%), Positives = 141/343 (41%), Gaps = 22/343 (6%)

Query: 97  FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQT-FS 155
            D A    + ++ + + P    YN ++ G    + +  AL ++  M Q    PD  + F+
Sbjct: 212 IDKALEFAERMRRVGVDPDVVTYNCLIKGLCGARRIVDALEMISSMLQNGCLPDKISYFT 271

Query: 156 YLIHNCSNEE--DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPV 213
            +   C  +   D+    E++  AG    +  +  LI+     G  ++A   + ++E   
Sbjct: 272 VMSFLCKEKRVADVQNLLERMSDAGIFPDQVTYNMLIHGLAKHGHADEALSFLRESEGKR 331

Query: 214 KSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLI 272
               EV  SA V +   +GR ++A  +  E+   GC  +     A+++     GEL++  
Sbjct: 332 FRVDEVGYSATVHSFCLNGRMAEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQAR 391

Query: 273 QLLEEVHDPDYWMDGC-------CRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYH 325
           ++++ ++      +GC         L+    +  + S A +LL + ++++     A+ Y 
Sbjct: 392 KMMKHMYK-----NGCKPNTVTHTALLNGLCKVGKSSEAWELLNKSEEEWWTPS-AITYS 445

Query: 326 FSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWK 385
                 +          + + +LQ      G  P+   ++ L+ A  N R    A    +
Sbjct: 446 VVMHGFRREGKLKESCDVVMQMLQ-----KGFFPTTVEINLLIHALCNERKPADAKDFME 500

Query: 386 EYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPH 428
           + ++ G   NV+++  +   F   G+ +SA  LL  M   + H
Sbjct: 501 QCQSKGCFINVVNFTTVIHGFSRQGDLESALSLLDDMYLTNRH 543


>gi|125555763|gb|EAZ01369.1| hypothetical protein OsI_23402 [Oryza sativa Indica Group]
          Length = 619

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 91/422 (21%), Positives = 165/422 (39%), Gaps = 40/422 (9%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+  V ++ +  + P+T T N IL          LVRR++  +      PN  TF  +I 
Sbjct: 141 AVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLFEQL----PAPNVFTFNIVID 196

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              K  +   A SL   +KEM  +P    +N+++ GY +  ++     +++EM ++  K 
Sbjct: 197 FLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKA 256

Query: 150 DSQTFSYLIHNC----SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           D  T++ LI NC       E    Y+  +K  G       F   ++A+   G   +A ++
Sbjct: 257 DVVTYNALI-NCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKL 315

Query: 206 VLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
                +   + +E   + L+      GR  DAI++ +E+   G  L       L++ L  
Sbjct: 316 FAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCK 375

Query: 265 EGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRF--KQLSSATDLLKQLKDKFKDDEMAM 322
           E ++     +L  +       +      L    F  K    A  LL ++K+K  + ++++
Sbjct: 376 ERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISL 435

Query: 323 EYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACV---------- 372
                +  C +   D         LL  + DE GL P+      ++ AC           
Sbjct: 436 YGALIQGLCNVHKLDEAK-----SLLTKM-DESGLEPNYIIYTTMMDACFKSGKVPEAIA 489

Query: 373 ------------NARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420
                       N   L  A  ++ E  + G+  + + Y  +   +L  GN   A  L +
Sbjct: 490 MLQKILDSGFQPNNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKA 549

Query: 421 KM 422
           KM
Sbjct: 550 KM 551


>gi|452825793|gb|EME32788.1| mitochondrial protein translocase, MPT family [Galdieria
           sulphuraria]
          Length = 821

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 121/273 (44%), Gaps = 11/273 (4%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQ-GELVPSTETINSILHACEESYEF 62
           KL+I P   ++  LI+ S        AL+ +  M +   L P   + N+++ AC +S +F
Sbjct: 521 KLQIQPDRITFNALISASGKAKNSIRALEAMGDMTEIYGLTPDRHSYNALIDACGKSGDF 580

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
                ++  +    ++P + TF ++I    +  D  +++ ++D + +  L P A   N +
Sbjct: 581 TKAYEVFEEMRTKGIRPCTVTFNALIYGASRSHDLAASFKIVDLMLQEGLNPDAYTMNTL 640

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS---NEEDIIKYYEQLKSAGG 179
           ++   R++D+  A  VL++ +Q  V PD+ TF+  I       + E + +   +++S G 
Sbjct: 641 ISACNRRQDLSTAFEVLEKFKQLGVHPDNVTFNTFIDAVGKLDSSEKMFELLSEMESRGI 700

Query: 180 QITKYVFMALINAYTTCGEFEK----ARQVVLDAEIPVKSRSEVKSALVSALASHGRTSD 235
             +K     ++     CG   K     R   +  E  ++  S   S L+    SH     
Sbjct: 701 SPSKVTLNTIVGC---CGRRGKIDLMERGFHMFHEKRLEPDSVTFSLLIENYVSHHLLDK 757

Query: 236 AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGEL 268
           A+I Y   K     L    V+ L+E L  + E+
Sbjct: 758 AVIAYHNCKRQQLELNSNVVMHLLESLIRKDEI 790



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 78/380 (20%), Positives = 160/380 (42%), Gaps = 59/380 (15%)

Query: 7   ITPSSASYKKLI--TYSC---DLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYE 61
           I P++ +Y  +I     C   D   +  A+ ++ +M     +P   T  +++ A  +  E
Sbjct: 379 IAPNTVTYNAVIKIVSRCKRNDCGGITRAMSLLREMATKGCIPDVVTYATLIDAFSKRME 438

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
                +++  +   N+KPN+  + S+IS   +    + A ++ +++    ++P    +NA
Sbjct: 439 PERALKLFQEMKEANVKPNNYCYSSLISAFCRAGYVERALAIFEEMTHERIVPDVFAFNA 498

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA---- 177
           ++ G+ + + V  A  +   M +  ++PD  TF+ LI      ++ I+  E +       
Sbjct: 499 LIDGFGKLRQVDKAFEIYDRMRKLQIQPDRITFNALISASGKAKNSIRALEAMGDMTEIY 558

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAI 237
           G    ++ + ALI+A    G+F KA +                                 
Sbjct: 559 GLTPDRHSYNALIDACGKSGDFTKAYE--------------------------------- 585

Query: 238 IVYEEIKEAG---CNLEPRAVIALIEHLNSEGELNRLIQL-LEEVHDPD-YWMDGCCRLI 292
            V+EE++  G   C +   A+I      +      +++ L L+E  +PD Y M+    LI
Sbjct: 586 -VFEEMRTKGIRPCTVTFNALIYGASRSHDLAASFKIVDLMLQEGLNPDAYTMN---TLI 641

Query: 293 LHCVRFKQLSSATDLLKQLKD-KFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFI 351
             C R + LS+A ++L++ K      D +     F+     +   D  +     +LL  +
Sbjct: 642 SACNRRQDLSTAFEVLEKFKQLGVHPDNVT----FNTFIDAVGKLDSSEKM--FELLSEM 695

Query: 352 KDELGLPPSRKCLDFLLGAC 371
           +   G+ PS+  L+ ++G C
Sbjct: 696 ESR-GISPSKVTLNTIVGCC 714



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 69/154 (44%), Gaps = 4/154 (2%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L + P + ++   I     L       +++ +M    + PS  T+N+I+  C    + +
Sbjct: 662 QLGVHPDNVTFNTFIDAVGKLDSSEKMFELLSEMESRGISPSKVTLNTIVGCCGRRGKID 721

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
           L+ R + M     L+P+S TF  +I   V     D A     + K   L   +++   ++
Sbjct: 722 LMERGFHMFHEKRLEPDSVTFSLLIENYVSHHLLDKAVIAYHNCKRQQLELNSNVVMHLL 781

Query: 124 AGYFRKKDVQGALMVLKE----MEQANVKPDSQT 153
               RK +++ A ++LK+    M   +++ D QT
Sbjct: 782 ESLIRKDEIEVAKLILKDYPFLMRHFSLEDDRQT 815


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/240 (21%), Positives = 110/240 (45%), Gaps = 3/240 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P++  Y  LI   CD+     AL   + M++  L+P     ++I+H+  ++ +     
Sbjct: 587 IVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAM 646

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++       + P+   + S+IS   K  D + A  L D++    + P   +YN ++ G 
Sbjct: 647 GVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGL 706

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
            +  +V  A  +  E+E+ ++ PD  T+S +I       N  +  K ++++ S G     
Sbjct: 707 CKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDG 766

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
           Y++  LI+     G  EKA  +  +A+          ++L+ +   HG+  +A  +++++
Sbjct: 767 YIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDM 826



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/323 (20%), Positives = 150/323 (46%), Gaps = 24/323 (7%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P + +Y  LI        +  A +++ +M   +L PS  T + ++     S +     
Sbjct: 412 LEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKAN 471

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +  + +KPN   + ++I   V+   ++ A  LL  +    ++P    YN ++ G 
Sbjct: 472 EVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGL 531

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITK 183
            R K V+ A M+L +M +  +KP++ T+   I+  S   +I    +Y++ + S+G     
Sbjct: 532 CRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNN 591

Query: 184 YVFMALINAYTTCGEFEKAR---QVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
            ++  LI  +   G   +A    + +L+  +    R+   SA++ +L+ +G+T +A+ V+
Sbjct: 592 VIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRA--YSAIIHSLSKNGKTKEAMGVF 649

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEE-VHDP--------DYWMDGCCRL 291
            +  + G   +     +LI     EG++ +  QL +E +H+         +  ++G C+L
Sbjct: 650 LKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKL 709

Query: 292 ILHCVRFKQLSSATDLLKQLKDK 314
                   +++ A +L  ++++K
Sbjct: 710 -------GEVTKARELFDEIEEK 725



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/283 (21%), Positives = 130/283 (45%), Gaps = 8/283 (2%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++TPS  +Y  LI+  C    +  A +V++QM++  + P+     +++ A  +   + + 
Sbjct: 446 KLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMA 505

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +  ++  + + P+   +  +I    + K  + A  LL D+ E  + P A  Y A +  
Sbjct: 506 IELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINL 565

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQIT 182
           Y +  ++Q A    K+M  + + P++  ++ LI    +  N  + +  ++ +   G    
Sbjct: 566 YSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPD 625

Query: 183 KYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
              + A+I++ +  G+ ++A  V L   +  V     + ++L+S     G    A  +Y+
Sbjct: 626 IRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYD 685

Query: 242 EIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPD 282
           E+   G N  P  V+   LI  L   GE+ +  +L +E+ + D
Sbjct: 686 EMLHNGIN--PNIVVYNTLINGLCKLGEVTKARELFDEIEEKD 726



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 100/216 (46%), Gaps = 13/216 (6%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P+    N+++    ++    L  ++Y  +    + P+  T+ ++I  + K+ D      +
Sbjct: 205 PTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMV 264

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-C- 161
           L ++ E    P    YNA + G  +   V  AL V K M +  + PD  T++ L+   C 
Sbjct: 265 LSEM-EKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCK 323

Query: 162 ---SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIP--VKSR 216
              S E  +I  +E + S+G    ++ + ALI+ +   G  E+A ++  D  I   +K  
Sbjct: 324 QKRSKEAKLI--FESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIK-DEMITRGLKLN 380

Query: 217 SEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP 252
               +A++  +A  G  + A+ ++ E+  AG  LEP
Sbjct: 381 VVTYNAMIGGIAKAGEMAKAMSLFNEMLMAG--LEP 414



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 101/237 (42%), Gaps = 6/237 (2%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           E  P+  +Y   I   C    V  AL+V + M++  L P   T   ++    +       
Sbjct: 271 ECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEA 330

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           + I+  +    L PN  T+ ++I   +K  + + A  + D++    L      YNA++ G
Sbjct: 331 KLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGG 390

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQIT 182
             +  ++  A+ +  EM  A ++PD+ T++ LI       D+ K  E   ++K+     +
Sbjct: 391 IAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPS 450

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEI--PVKSRSEVKSALVSALASHGRTSDAI 237
            + +  LI+      + +KA + VLD  I   VK    +   L+ A     R   AI
Sbjct: 451 PFTYSVLISGLCHSSDLQKANE-VLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAI 506


>gi|168000146|ref|XP_001752777.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695940|gb|EDQ82281.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 694

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 91/183 (49%), Gaps = 3/183 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P S ++   +       K   A++V ++M      P   +  ++L A E+    +   
Sbjct: 457 IKPDSFAWNAALIACGRAHKPAAAIEVFQRMTAAGQQPGVLSYGALLSALEKGNLTSQAE 516

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++  +     KPN   + +MI++  K  ++  A  L  D++   + PT   +NA++   
Sbjct: 517 QVWKHMLKVGTKPNEYAYTTMITVRGKSGNYSEAADLFYDMQRNGMEPTVVTHNAMITAC 576

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITK 183
            R  D QGA+  L++ME ++V+PDS T+S +I   ++E + +    YY ++++ G  I+ 
Sbjct: 577 ARASDGQGAVKWLQQMEASSVEPDSITYSQVIGALASEGNWLLATSYYIKMRNLGLPISC 636

Query: 184 YVF 186
            V+
Sbjct: 637 SVY 639


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 126/284 (44%), Gaps = 6/284 (2%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQ--GELVPSTETINSILHACEESY 60
            +L   P+  SY  L+   CD  +   AL++++ M    G+  P   +  ++++   +  
Sbjct: 154 TQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEG 213

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           + +     Y  +    + PN  T+ S+I+   K +  D A  +L  + +  +MP    YN
Sbjct: 214 DLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYN 273

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI-HNCSNEE--DIIKYYEQLKSA 177
           +I+ GY      + A+  LK+M    V+PD  T++ L+ + C N    +  K ++ +   
Sbjct: 274 SIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKR 333

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDA 236
           G +     +  L+  Y T G   +   ++ L     +     V S L+ A A  G+   A
Sbjct: 334 GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQA 393

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           ++V+ ++++ G N +      +I  L   G +   ++  E++ D
Sbjct: 394 MLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID 437



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 78/189 (41%), Gaps = 35/189 (18%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA----------- 55
           + P + +Y  +I   C   +V  A+   EQM+   L P     NS++H+           
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAK 464

Query: 56  -----------CEESYEFNLV-------------RRIYPMICHHNLKPNSETFRSMISLN 91
                      C ++  FN +              +++ ++    +KP+  T+ ++I   
Sbjct: 465 ELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 524

Query: 92  VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151
                 D A  LL  +  + + P    YN ++ GY +   ++ AL++ +EME + V PD 
Sbjct: 525 CLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDI 584

Query: 152 QTFSYLIHN 160
            T++ ++  
Sbjct: 585 ITYNIILQG 593



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 103/261 (39%), Gaps = 10/261 (3%)

Query: 1   MHAKLE------ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILH 54
           MH  L+      I P+   +  LI       KV  A+ V  +M Q  L P T T  +++ 
Sbjct: 358 MHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIG 417

Query: 55  ACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMP 114
              +S       R +  +    L P +  + S+I        +D A  L+ ++ +  +  
Sbjct: 418 ILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL 477

Query: 115 TASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYY 171
               +N+I+  + ++  V  +  +   M +  VKPD  T+S LI         ++  K  
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLL 537

Query: 172 EQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASH 230
             + S G +     +  LIN Y      E A  +  + E    S   +  + ++  L   
Sbjct: 538 ASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQT 597

Query: 231 GRTSDAIIVYEEIKEAGCNLE 251
            RT+ A  +Y  I E+G  LE
Sbjct: 598 RRTAAAKELYVGITESGTQLE 618


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 132/322 (40%), Gaps = 47/322 (14%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACE------ESYE 61
           TP+ A+Y  L+   C + ++  A+D++ ++V     P   T  S++          E+Y+
Sbjct: 18  TPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYK 77

Query: 62  F-----------------NLVRR------------IYPMICHHNLKPNSETFRSMISLNV 92
                              L+R             +Y  +  H   P+  T  +MI    
Sbjct: 78  LFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLS 137

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
           K     +A  +   ++   L P   +Y+A++ G  + + +  AL +L +M++A   PD+ 
Sbjct: 138 KAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTI 197

Query: 153 TFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA 209
           T++ LI       D+     +++++  AG +   Y +  LI+ +   G  + A    L  
Sbjct: 198 TYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASH-SLAQ 256

Query: 210 EIPVKSRS---EVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
           E  +   +      +A+V  LA + +  +A+ + E+I   GC        AL+  L   G
Sbjct: 257 ETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMG 316

Query: 267 ELNRLIQLLEEVHDPDYWMDGC 288
            L   I LL ++ D     +GC
Sbjct: 317 RLEEAIDLLRKIVD-----NGC 333



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 121/290 (41%), Gaps = 14/290 (4%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           K+  A  V + M     VP   T+++++    ++       RI+  +    L PN   + 
Sbjct: 106 KIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYS 165

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           ++I    K +  D A  +L  +K+    P    YN ++ G  +  DV+ A     EM +A
Sbjct: 166 ALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEA 225

Query: 146 NVKPDSQTFSYLIHN-C-SNEEDIIKY--YEQLKSAGGQITKYVFMALINAYTTCGEFEK 201
             KPD  T++ LI   C +   D   +   ++    G  I  + + A+++      + E+
Sbjct: 226 GCKPDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEE 285

Query: 202 ARQVVLDAEIPVKSRS---EVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
           A  V L  +I     +      +AL++ L   GR  +AI +  +I + GC  +     +L
Sbjct: 286 A--VALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSL 343

Query: 259 IEHLNSEGELNRLIQLLEEVHDPDYWMDGCC-----RLILHCVRFKQLSS 303
           I+ L  E       +L +E+      +D  C     R +L   +  Q SS
Sbjct: 344 IDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASS 393



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/279 (21%), Positives = 116/279 (41%), Gaps = 39/279 (13%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACE------ESYE 61
           TP+ A+Y  L+   C + ++  A+D++ ++V     P   T  S++          E+Y+
Sbjct: 299 TPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYK 358

Query: 62  F-----------------NLVRR------------IYPMICHHNLKPNSETFRSMISLNV 92
                              L+R             +Y  +  H   P+  T  +MI    
Sbjct: 359 LFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLS 418

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
           K     +A  +   ++   L P   +Y+A++ G  + + +  AL +L +M++A   PD+ 
Sbjct: 419 KAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTI 478

Query: 153 TFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA 209
           T++ LI       D+     +++++  AG +   Y +  LI+ +   G  + A  V  D 
Sbjct: 479 TYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDM 538

Query: 210 EIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAG 247
                S + V   AL+S L    + + A + ++ +KE G
Sbjct: 539 SSSRCSANVVTYGALISGLCKRRQLTKASLYFQHMKERG 577



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 67/336 (19%), Positives = 135/336 (40%), Gaps = 55/336 (16%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+   Y  LI   C   K+  AL+++ QM +    P T T N ++    +S +    R
Sbjct: 157 LAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAAR 216

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDS--------------------------- 99
             +  +     KP+  T+  +IS   K  + D+                           
Sbjct: 217 AFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDW 276

Query: 100 ---------AYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD 150
                    A +L++ +      PT + YNA++ G  +   ++ A+ +L+++      PD
Sbjct: 277 LAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPD 336

Query: 151 SQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV-- 205
             T++ LI     E+   +  K ++++   G  +    + ALI      G+  +A  V  
Sbjct: 337 VVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYK 396

Query: 206 VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLN 263
            + +   V     + S ++  L+  GR   A+ +++ ++  G  L P  V+  ALI  L 
Sbjct: 397 TMTSHGCVPDVVTL-STMIDGLSKAGRIGAAVRIFKSMEARG--LAPNEVVYSALIHGLC 453

Query: 264 SEGELNRLIQLLEEVH----DPD-----YWMDGCCR 290
              +++  +++L ++      PD       +DG C+
Sbjct: 454 KARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCK 489



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 62/138 (44%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+   Y  LI   C   K+  AL+++ QM +    P T T N ++    +S +    R
Sbjct: 438 LAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAAR 497

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
             +  +     KP+  T+  +IS   K  + D+A  + DD+           Y A+++G 
Sbjct: 498 AFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGL 557

Query: 127 FRKKDVQGALMVLKEMEQ 144
            +++ +  A +  + M++
Sbjct: 558 CKRRQLTKASLYFQHMKE 575



 Score = 45.8 bits (107), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 95/210 (45%), Gaps = 19/210 (9%)

Query: 97  FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSY 156
            + A +L++ +      PT + YNA++ G  +   ++ A+ +L+++      PD  T++ 
Sbjct: 2   IEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTS 61

Query: 157 LIHNCSNEE---DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV--VLDAEI 211
           LI     E+   +  K ++++   G  +    + ALI      G+  +A  V   + +  
Sbjct: 62  LIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHG 121

Query: 212 PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELN 269
            V     + S ++  L+  GR   A+ +++ ++  G  L P  V+  ALI  L    +++
Sbjct: 122 CVPDVVTL-STMIDGLSKAGRIGAAVRIFKSMEARG--LAPNEVVYSALIHGLCKARKMD 178

Query: 270 RLIQLLEEVH----DPD-----YWMDGCCR 290
             +++L ++      PD       +DG C+
Sbjct: 179 CALEMLAQMKKAFCTPDTITYNVLIDGLCK 208


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 106/222 (47%), Gaps = 14/222 (6%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+ +  + +   L+P   T  S+L AC  +  F   ++++ +     L  N     ++I+
Sbjct: 111 AISLFIKALNYNLLPDDYTFPSLLKACVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLIN 170

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +     D D A  + D++ E    P    YNAI+ GY R      AL + ++++   +KP
Sbjct: 171 MYAGCNDVDGAQRVFDEILE----PCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKP 226

Query: 150 DSQTFSYLIHNCS--NEEDIIKY-YEQLKSAGGQITKYVFM--ALINAYTTCGEFEKARQ 204
           +  T   ++ +C+     D+ K+ +E +K  G  + KYV +  ALI+ Y  CG  + A  
Sbjct: 227 NDVTVLSVLSSCALLGALDLGKWIHEYVKKNG--LDKYVKVNTALIDMYAKCGSLDGAIS 284

Query: 205 VVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA 246
           V     +     ++  SA++ A A HG+  D + ++EE+  A
Sbjct: 285 VFESMSV---RDTQAWSAMIVAYAMHGQGQDVMSMFEEMARA 323



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 108/243 (44%), Gaps = 10/243 (4%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   SY  +IT      + + AL +  Q+   +L P+  T+ S+L +C      +L +
Sbjct: 189 LEPCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGK 248

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            I+  +  + L    +   ++I +  K    D A S+ + +   +       ++A++  Y
Sbjct: 249 WIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRD----TQAWSAMIVAY 304

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITK 183
                 Q  + + +EM +A V+PD  TF  L++ CS+    ++  +Y+  +    G I  
Sbjct: 305 AMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPG 364

Query: 184 YV-FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
              +  +++     G   +A + +   E+P+K    +   L+S+ +SHG    A  V  +
Sbjct: 365 IKHYGCMVDLLGRAGLLHEAYKFI--DELPIKPTPILWRTLLSSCSSHGNLELAKQVMNQ 422

Query: 243 IKE 245
           I E
Sbjct: 423 ILE 425



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 73/175 (41%), Gaps = 20/175 (11%)

Query: 91  NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD 150
           N      D A+ L + + +    P   ++N++  GY R      A+ +  +    N+ PD
Sbjct: 71  NPTTASMDYAHQLFEAIPQ----PDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPD 126

Query: 151 SQTFSYLIHNCSNEEDIIKYYEQLKS-------AGGQITKYVFMALINAYTTCGEFEKAR 203
             TF  L+  C     + K ++Q K         G     YV   LIN Y  C + + A+
Sbjct: 127 DYTFPSLLKACV----VAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQ 182

Query: 204 QVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
           +V  +   P        +A+++  A   R ++A+ ++ +++     L+P  V  L
Sbjct: 183 RVFDEILEPCVVS---YNAIITGYARSSRPNEALSLFRQLQAR--KLKPNDVTVL 232


>gi|302790562|ref|XP_002977048.1| hypothetical protein SELMODRAFT_106624 [Selaginella moellendorffii]
 gi|300155024|gb|EFJ21657.1| hypothetical protein SELMODRAFT_106624 [Selaginella moellendorffii]
          Length = 883

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 159/362 (43%), Gaps = 35/362 (9%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+++   M    + P + T++S+L AC    +    RRI+  I     +        ++ 
Sbjct: 130 AIEMFRSMDSAGIKPDSATLSSVLGACSSLRDLEEGRRIHGRISSGEFQSGIVVETGLVK 189

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  +      A  + D ++  +++     +N+++A Y +      A  + +EME   VK 
Sbjct: 190 MYARCGRLREAREVFDRIENKDVI----CWNSMIAAYAQGGHSAQARQLCEEMEGFGVKA 245

Query: 150 DSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA 209
              TF+ ++  CS+ E+  K + +  + G   +  V  ALI+ Y  C E + AR+V    
Sbjct: 246 SDTTFAGILGACSSLEEGKKIHSRALARGLSSSIIVQNALISMYGKCNELDAARRVF--- 302

Query: 210 EIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGEL 268
              V++   V  +AL+ A   HGR  +A+ +Y++++  G  +EP  V      L++    
Sbjct: 303 -SKVRAHDVVSWTALIVAYTQHGRNREALELYKQMEGEG--MEPDKVT-FTSVLSACSNT 358

Query: 269 NRLIQLLEEVH-----DPDYWMDG--CCRLILHCVRFKQLSSATDLLKQLKDK---FKDD 318
           N L +L + +H       D + DG     LI   V+  +L  ++++ +  KD       +
Sbjct: 359 NDL-ELGQALHARLLARKDGFSDGVLVAALINMYVKCGRLDLSSEIFQSCKDTKAVVVWN 417

Query: 319 EMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLK 378
            M   Y   E + + A          +DL   +K + GL P    L  +L AC   +DL+
Sbjct: 418 AMITAYE-QEGYSRAA----------VDLYDMMK-QRGLDPDESTLSSILSACAELKDLE 465

Query: 379 RA 380
           + 
Sbjct: 466 KG 467



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 91/209 (43%), Gaps = 20/209 (9%)

Query: 47  ETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDD 106
           +T  ++L  C  +      RRI+  I    L  +      ++ +  K    D A  +   
Sbjct: 46  QTYAALLKHCGNAAALPQGRRIHAHIVASGLASDGFLGDHLLQMYGKCGSVDDAIQVFHA 105

Query: 107 LKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED 166
           L   +L      +N I+A + + +  + A+ + + M+ A +KPDS T S ++  CS+  D
Sbjct: 106 LPRRSLFS----WNFIIAAFAKNRHGRKAIEMFRSMDSAGIKPDSATLSSVLGACSSLRD 161

Query: 167 I---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK--- 220
           +    + + ++ S   Q    V   L+  Y  CG   +AR+V          R E K   
Sbjct: 162 LEEGRRIHGRISSGEFQSGIVVETGLVKMYARCGRLREAREVF--------DRIENKDVI 213

Query: 221 --SALVSALASHGRTSDAIIVYEEIKEAG 247
             +++++A A  G ++ A  + EE++  G
Sbjct: 214 CWNSMIAAYAQGGHSAQARQLCEEMEGFG 242



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 85/181 (46%), Gaps = 8/181 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYP-MICHHNLKPNSETFRSMI 88
           AL++ +QM    + P   T  S+L AC  + +  L + ++  ++   +   +     ++I
Sbjct: 329 ALELYKQMEGEGMEPDKVTFTSVLSACSNTNDLELGQALHARLLARKDGFSDGVLVAALI 388

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
           ++ VK    D +  +    K+   +    ++NA++  Y ++   + A+ +   M+Q  + 
Sbjct: 389 NMYVKCGRLDLSSEIFQSCKDTKAVV---VWNAMITAYEQEGYSRAAVDLYDMMKQRGLD 445

Query: 149 PDSQTFSYLIHNCSNEEDIIK----YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204
           PD  T S ++  C+  +D+ K    + E + S        V  ALI+ Y +CGE  +A+ 
Sbjct: 446 PDESTLSSILSACAELKDLEKGEQVHVEIIASRDCSQNPVVLNALISMYASCGEIREAKA 505

Query: 205 V 205
           V
Sbjct: 506 V 506



 Score = 39.3 bits (90), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 123/286 (43%), Gaps = 26/286 (9%)

Query: 37  MVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLK-----PNSETFRSMISLN 91
           +V+G + P+  T+ +++ AC      + +  ++  I  H L       ++    ++IS+ 
Sbjct: 542 LVEG-VQPTEVTMLAVIAAC------SAMESLWEGIVIHALTDSMFFTDTAVQAALISMY 594

Query: 92  VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151
            + +  D A  +   ++  +L  +A+ +NA++A Y +    +  + +  EM    +K + 
Sbjct: 595 ARCRRLDLACQVFRQVR--HLESSANCWNAMLAAYSQLGLPEEGIRLYWEMSSTGIKANE 652

Query: 152 QTFSYLIHNCSNEEDIIKYY---EQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
            TF+  +  CS    + + Y   EQ+ S+       +  AL++ Y  C   + A  V   
Sbjct: 653 GTFAGALAACSMLGAVREGYRIHEQVSSSRYSSDLSLKTALVHMYAKCNRVDAAFHVFEQ 712

Query: 209 AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE--HLNSEG 266
            +  V +     +A+++A A +G    A+ +Y ++      LEP  +   +   H     
Sbjct: 713 LQPDVVA----WNAMIAAYAQNGYAWHALELYSKMLHGYKPLEPTFLCVFLACGHAGLVD 768

Query: 267 ELNRLIQ-LLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQL 311
           E     Q ++E+   P +    C   +L   R  +L  A DLL  +
Sbjct: 769 ECKWYFQSMIEDRITPTFDHYSCVVTVLS--RAGKLEEAEDLLHSM 812


>gi|296084463|emb|CBI25022.3| unnamed protein product [Vitis vinifera]
          Length = 927

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/323 (21%), Positives = 151/323 (46%), Gaps = 12/323 (3%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
            +K N +T+  +I+  V++KD+ +A+++ +D+ +  L P   +YN I+  +    ++  A
Sbjct: 473 GIKHNMKTYSMLINGFVRLKDWANAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRA 532

Query: 136 LMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINA 192
           +  +KEM++   +P ++TF  +IH  +   D+   ++ ++ ++ +G   T + F ALI  
Sbjct: 533 IRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILG 592

Query: 193 YTTCGEFEKARQVVLDAEIPVKSRSE-VKSALVSALASHGRTSDAIIVYEEIKEAGCNLE 251
                + EKA +++ +  +   S +E   + ++   AS G T  A   + ++K  G  L+
Sbjct: 593 LVEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELD 652

Query: 252 PRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL--HCVRFKQLSSATDLLK 309
                AL++     G +   + +  E+       +     IL     R   +  A +L++
Sbjct: 653 VYTYEALLKACCKSGRMQSALAVTREMSSQKIPRNTFVYNILIDGWARRGDVWEAAELMQ 712

Query: 310 QLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLG 369
           Q+K +    ++     F    C+       D+Q     +Q + + +G+ P+ K    L+ 
Sbjct: 713 QMKQEGVQPDIHTYTSFINACCKAG-----DMQRATKTIQEM-EVVGVKPNIKTYTTLIH 766

Query: 370 ACVNARDLKRAHLIWKEYENAGL 392
               A   ++A   ++E ++AGL
Sbjct: 767 GWARASLPEKALKCFQEMKSAGL 789



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 140/373 (37%), Gaps = 55/373 (14%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P    Y  +I   C +  +  A+  V++M +    P+T T   I+H    S +     
Sbjct: 509 LKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRRAL 568

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            I+ M+      P   TF ++I   V+    + A  +LD++    + P    Y  IM GY
Sbjct: 569 EIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGY 628

Query: 127 FRKKD-----------------------------------VQGALMVLKEMEQANVKPDS 151
               D                                   +Q AL V +EM    +  ++
Sbjct: 629 ASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSSQKIPRNT 688

Query: 152 QTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
             ++ LI   +   D+ +  E   Q+K  G Q   + + + INA    G+ ++A + + +
Sbjct: 689 FVYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQRATKTIQE 748

Query: 209 AE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
            E + VK   +  + L+   A       A+  ++E+K AG   +      L+  L     
Sbjct: 749 MEVVGVKPNIKTYTTLIHGWARASLPEKALKCFQEMKSAGLKPDKAVYHCLMTSL----- 803

Query: 268 LNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFS 327
           L+R     E ++     + G CR ++ C     + +A    K L+         +E    
Sbjct: 804 LSRASVAEEYIYSG---VVGICREMIECELTVDMGTAVHWSKCLRK--------IERTGG 852

Query: 328 EIFCQIATTDPPD 340
           E+   +  T PPD
Sbjct: 853 ELTEALQKTFPPD 865



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 96/485 (19%), Positives = 187/485 (38%), Gaps = 71/485 (14%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           PS   +  ++TY      +H A    E M    + P++    S++HA     +       
Sbjct: 266 PSRKEFGLMVTYYARRGDMHHARGTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSC 325

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    ++ +  T+  ++    KI D ++A     + KE +    A +Y  I+  + +
Sbjct: 326 VRKMKEEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNIIYAHCQ 385

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYV 185
             ++  A  +++EME+  +      +  ++       NEE  +  +++LK  G   +   
Sbjct: 386 ACNMTQAEALVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECGFTPSVIS 445

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +  LIN Y   G+  KA +V    E+  +K   +  S L++        ++A  V+E++ 
Sbjct: 446 YGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAVFEDVV 505

Query: 245 EAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEV----HDPDY--------------- 283
           + G  L+P  V+   +I      G ++R I+ ++E+    H P                 
Sbjct: 506 KDG--LKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSGD 563

Query: 284 ------------WMDGCC-------RLILHCVRFKQLSSATDLLKQLKDKFKDDEMAM-- 322
                       W  GC         LIL  V   Q+  A ++L         DEM++  
Sbjct: 564 MRRALEIFDMMRW-SGCIPTVHTFNALILGLVEKCQMEKAVEIL---------DEMSLAG 613

Query: 323 ----EYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLK 378
               E+ ++ I    A+    D     +    +K E GL       + LL AC  +  ++
Sbjct: 614 ISPNEHTYTTIMHGYASLG--DTGKAFEYFTKLKTE-GLELDVYTYEALLKACCKSGRMQ 670

Query: 379 RAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM------PKDDPHVRFV 432
            A  + +E  +  +P N   Y  +   +   G+   A++L+ +M      P    +  F+
Sbjct: 671 SALAVTREMSSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFI 730

Query: 433 IQACK 437
              CK
Sbjct: 731 NACCK 735



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/310 (18%), Positives = 136/310 (43%), Gaps = 14/310 (4%)

Query: 78  KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALM 137
           KP+ + F  M++   +  D   A    + ++   + PT+ +Y +++  Y   +D++ AL 
Sbjct: 265 KPSRKEFGLMVTYYARRGDMHHARGTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALS 324

Query: 138 VLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYT 194
            +++M++  ++    T+S L+      ++ E    ++++ K     +   ++  +I A+ 
Sbjct: 325 CVRKMKEEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNIIYAHC 384

Query: 195 TCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPR 253
                 +A  +V +  E  + +  ++   ++      G     +IV++ +KE G      
Sbjct: 385 QACNMTQAEALVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECGFTPSVI 444

Query: 254 AVIALIEHLNSEGELNRLIQL--LEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQ- 310
           +   LI      G++++ +++  + EV    + M     LI   VR K  ++A  + +  
Sbjct: 445 SYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAVFEDV 504

Query: 311 LKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGA 370
           +KD  K D + +  +    FC +   D       +  ++ ++ E   P +R  +  + G 
Sbjct: 505 VKDGLKPD-VVLYNNIIRAFCGMGNMDR-----AIRTVKEMQKERHRPTTRTFMPIIHG- 557

Query: 371 CVNARDLKRA 380
              + D++RA
Sbjct: 558 FARSGDMRRA 567


>gi|225464410|ref|XP_002269194.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic [Vitis vinifera]
          Length = 929

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/323 (21%), Positives = 151/323 (46%), Gaps = 12/323 (3%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
            +K N +T+  +I+  V++KD+ +A+++ +D+ +  L P   +YN I+  +    ++  A
Sbjct: 494 GIKHNMKTYSMLINGFVRLKDWANAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRA 553

Query: 136 LMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINA 192
           +  +KEM++   +P ++TF  +IH  +   D+   ++ ++ ++ +G   T + F ALI  
Sbjct: 554 IRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILG 613

Query: 193 YTTCGEFEKARQVVLDAEIPVKSRSE-VKSALVSALASHGRTSDAIIVYEEIKEAGCNLE 251
                + EKA +++ +  +   S +E   + ++   AS G T  A   + ++K  G  L+
Sbjct: 614 LVEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELD 673

Query: 252 PRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL--HCVRFKQLSSATDLLK 309
                AL++     G +   + +  E+       +     IL     R   +  A +L++
Sbjct: 674 VYTYEALLKACCKSGRMQSALAVTREMSSQKIPRNTFVYNILIDGWARRGDVWEAAELMQ 733

Query: 310 QLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLG 369
           Q+K +    ++     F    C+       D+Q     +Q + + +G+ P+ K    L+ 
Sbjct: 734 QMKQEGVQPDIHTYTSFINACCKAG-----DMQRATKTIQEM-EVVGVKPNIKTYTTLIH 787

Query: 370 ACVNARDLKRAHLIWKEYENAGL 392
               A   ++A   ++E ++AGL
Sbjct: 788 GWARASLPEKALKCFQEMKSAGL 810



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 140/373 (37%), Gaps = 55/373 (14%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P    Y  +I   C +  +  A+  V++M +    P+T T   I+H    S +     
Sbjct: 530 LKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRRAL 589

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            I+ M+      P   TF ++I   V+    + A  +LD++    + P    Y  IM GY
Sbjct: 590 EIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGY 649

Query: 127 FRKKD-----------------------------------VQGALMVLKEMEQANVKPDS 151
               D                                   +Q AL V +EM    +  ++
Sbjct: 650 ASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSSQKIPRNT 709

Query: 152 QTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
             ++ LI   +   D+ +  E   Q+K  G Q   + + + INA    G+ ++A + + +
Sbjct: 710 FVYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQRATKTIQE 769

Query: 209 AE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
            E + VK   +  + L+   A       A+  ++E+K AG   +      L+  L     
Sbjct: 770 MEVVGVKPNIKTYTTLIHGWARASLPEKALKCFQEMKSAGLKPDKAVYHCLMTSL----- 824

Query: 268 LNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFS 327
           L+R     E ++     + G CR ++ C     + +A    K L+         +E    
Sbjct: 825 LSRASVAEEYIYSG---VVGICREMIECELTVDMGTAVHWSKCLRK--------IERTGG 873

Query: 328 EIFCQIATTDPPD 340
           E+   +  T PPD
Sbjct: 874 ELTEALQKTFPPD 886



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 96/485 (19%), Positives = 187/485 (38%), Gaps = 71/485 (14%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           PS   +  ++TY      +H A    E M    + P++    S++HA     +       
Sbjct: 287 PSRKEFGLMVTYYARRGDMHHARGTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSC 346

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    ++ +  T+  ++    KI D ++A     + KE +    A +Y  I+  + +
Sbjct: 347 VRKMKEEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNIIYAHCQ 406

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYV 185
             ++  A  +++EME+  +      +  ++       NEE  +  +++LK  G   +   
Sbjct: 407 ACNMTQAEALVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECGFTPSVIS 466

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +  LIN Y   G+  KA +V    E+  +K   +  S L++        ++A  V+E++ 
Sbjct: 467 YGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAVFEDVV 526

Query: 245 EAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEV----HDPDY--------------- 283
           + G  L+P  V+   +I      G ++R I+ ++E+    H P                 
Sbjct: 527 KDG--LKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSGD 584

Query: 284 ------------WMDGCC-------RLILHCVRFKQLSSATDLLKQLKDKFKDDEMAM-- 322
                       W  GC         LIL  V   Q+  A ++L         DEM++  
Sbjct: 585 MRRALEIFDMMRW-SGCIPTVHTFNALILGLVEKCQMEKAVEIL---------DEMSLAG 634

Query: 323 ----EYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLK 378
               E+ ++ I    A+    D     +    +K E GL       + LL AC  +  ++
Sbjct: 635 ISPNEHTYTTIMHGYASLG--DTGKAFEYFTKLKTE-GLELDVYTYEALLKACCKSGRMQ 691

Query: 379 RAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM------PKDDPHVRFV 432
            A  + +E  +  +P N   Y  +   +   G+   A++L+ +M      P    +  F+
Sbjct: 692 SALAVTREMSSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFI 751

Query: 433 IQACK 437
              CK
Sbjct: 752 NACCK 756



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/310 (18%), Positives = 136/310 (43%), Gaps = 14/310 (4%)

Query: 78  KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALM 137
           KP+ + F  M++   +  D   A    + ++   + PT+ +Y +++  Y   +D++ AL 
Sbjct: 286 KPSRKEFGLMVTYYARRGDMHHARGTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALS 345

Query: 138 VLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYT 194
            +++M++  ++    T+S L+      ++ E    ++++ K     +   ++  +I A+ 
Sbjct: 346 CVRKMKEEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNIIYAHC 405

Query: 195 TCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPR 253
                 +A  +V +  E  + +  ++   ++      G     +IV++ +KE G      
Sbjct: 406 QACNMTQAEALVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECGFTPSVI 465

Query: 254 AVIALIEHLNSEGELNRLIQL--LEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQ- 310
           +   LI      G++++ +++  + EV    + M     LI   VR K  ++A  + +  
Sbjct: 466 SYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAVFEDV 525

Query: 311 LKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGA 370
           +KD  K D + +  +    FC +   D       +  ++ ++ E   P +R  +  + G 
Sbjct: 526 VKDGLKPD-VVLYNNIIRAFCGMGNMDR-----AIRTVKEMQKERHRPTTRTFMPIIHG- 578

Query: 371 CVNARDLKRA 380
              + D++RA
Sbjct: 579 FARSGDMRRA 588


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/410 (17%), Positives = 176/410 (42%), Gaps = 12/410 (2%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           + +  +   LI   C L +V  AL  ++Q +     P   T N+ ++   ++       +
Sbjct: 248 SATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALK 307

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +  ++      P+  T+  +++   K    + A  +L+ + +   +P  + +N ++A   
Sbjct: 308 VMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALC 367

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKYYEQLKSAGGQITKY 184
               ++ AL + +++    V PD  TF+ LI+      D    ++ +E++K++G    + 
Sbjct: 368 TGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEV 427

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEI 243
            +  LI+   + G+  KA  ++ D E     RS +  + ++  L    R  +A  V++++
Sbjct: 428 TYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQM 487

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQL 301
              G +        LI+ L  + +++   +L+ ++       +      ++ H  +   +
Sbjct: 488 DLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDI 547

Query: 302 SSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSR 361
             A D+L+ +     + ++          C+   T     Q+ L +L+ ++ + G+ P+ 
Sbjct: 548 KKAADILETMTANGFEVDVVTYGTLINGLCKAGRT-----QVALKVLRGMRIK-GMRPTP 601

Query: 362 KCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGN 411
           K  + +L +     +++ A  +++E    G P + L+Y  +++     G 
Sbjct: 602 KAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGG 651



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 90/469 (19%), Positives = 178/469 (37%), Gaps = 71/469 (15%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I   +  Y  L+    +  K+ +   V  +M    + P   T N+++ A   +++     
Sbjct: 142 IQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAV 201

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +    + P+  TF +++   V+    ++A  +   + EM    T    N ++ GY
Sbjct: 202 LMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGY 261

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE------------------DI 167
            +   V+ AL  +++      +PD  T++  ++  C N+                   D+
Sbjct: 262 CKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDV 321

Query: 168 IKY---------YEQLKSAGGQITKYV----------FMALINAYTTCGEFEK----ARQ 204
             Y           QL+ A G + + V          F  LI A  T    E+    ARQ
Sbjct: 322 FTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQ 381

Query: 205 VVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
           V +    P      +   L++AL   G    A+ ++EE+K +GC  +      LI++L S
Sbjct: 382 VTVKGVSPDVYTFNI---LINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCS 438

Query: 265 EGELNRLIQLLEEVHDP---------DYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKF 315
            G+L + + LL+++            +  +DG C+ +       ++  A ++  Q+  + 
Sbjct: 439 LGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKM-------RIEEAEEVFDQMDLQG 491

Query: 316 KDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDEL--GLPPSRKCLDFLLGACVN 373
                       +  C+    D        D  + I   +  GL P+    + +L     
Sbjct: 492 ISRNAITFNTLIDGLCKDKKID--------DAFELINQMISEGLQPNNITYNSILTHYCK 543

Query: 374 ARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
             D+K+A  I +     G   +V++Y  +      +G  + A K+L  M
Sbjct: 544 QGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGM 592



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 74/155 (47%), Gaps = 2/155 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSIL-HACEESYEFNLV 65
           I+ ++ ++  LI   C   K+  A +++ QM+   L P+  T NSIL H C++  +    
Sbjct: 492 ISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQG-DIKKA 550

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             I   +  +  + +  T+ ++I+   K      A  +L  ++   + PT   YN ++  
Sbjct: 551 ADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQS 610

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160
            FR+ +++ AL + +EM +    PD+ T+  +   
Sbjct: 611 LFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRG 645


>gi|356532311|ref|XP_003534717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Glycine max]
          Length = 755

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 108/233 (46%), Gaps = 14/233 (6%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL V  QM++  + PST T+ S++ AC +   +NL   I   I    L  +  T  S+++
Sbjct: 345 ALAVFRQMLKFGVKPSTATMASVITACAQLGSYNLGTSILGYILRQELPLDVATQNSLVT 404

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K    D +  + D +   +L+     +NA++ GY +   V  AL +  EM   N  P
Sbjct: 405 MYAKCGHLDQSSIVFDMMNRRDLVS----WNAMVTGYAQNGYVCEALFLFNEMRSDNQTP 460

Query: 150 DSQTFSYLIHNC--SNEEDIIKYYEQLKSAGG-QITKYVFMALINAYTTCGEFEKARQVV 206
           DS T   L+  C  + +  + K+        G +    V  +L++ Y  CG+ + A++  
Sbjct: 461 DSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCKCGDLDTAQRCF 520

Query: 207 LDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
              ++P  S   V  SA++     HG+   A+  Y +  E+G  ++P  VI L
Sbjct: 521 --NQMP--SHDLVSWSAIIVGYGYHGKGEAALRFYSKFLESG--MKPNHVIFL 567



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 87/428 (20%), Positives = 162/428 (37%), Gaps = 47/428 (10%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           +   A ++ L TY+  +LK HV  D               T  S+L AC     F+L   
Sbjct: 37  STQGAHHQVLATYA-SMLKTHVPSDAY-------------TFPSLLKACSFLNLFSLGLT 82

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           ++  I    L  ++    S+I+   K    D A  + D + E N++P    +  I+  Y 
Sbjct: 83  LHQRILVSGLSLDAYIASSLINFYAKFGFADVARKVFDYMPERNVVP----WTTIIGCYS 138

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFM 187
           R   V  A  +  EM +  ++P S T   L+   S           ++   G    Y FM
Sbjct: 139 RTGRVPEAFSLFDEMRRQGIQPSSVTVLSLLFGVSE-------LAHVQCLHGCAILYGFM 191

Query: 188 -------ALINAYTTCGEFEKARQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDAII 238
                  +++N Y  CG  E +R++   +D    V   S     L+SA A  G   + ++
Sbjct: 192 SDINLSNSMLNVYGKCGNIEYSRKLFDYMDHRDLVSWNS-----LISAYAQIGNICEVLL 246

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRF 298
           + + ++  G    P+   +++    S GEL     L  ++    +++D      L  V  
Sbjct: 247 LLKTMRLQGFEAGPQTFGSVLSVAASRGELKLGRCLHGQILRAGFYLDAHVETSLIVVYL 306

Query: 299 KQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLP 358
           K      D+  ++ ++  D ++ +         Q  + D   + +   +L+F     G+ 
Sbjct: 307 K--GGKIDIAFRMFERSSDKDVVLWTAMISGLVQNGSADKA-LAVFRQMLKF-----GVK 358

Query: 359 PSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKL 418
           PS   +  ++ AC           I        LP +V +   +   +   G+   +S +
Sbjct: 359 PSTATMASVITACAQLGSYNLGTSILGYILRQELPLDVATQNSLVTMYAKCGHLDQSSIV 418

Query: 419 LSKMPKDD 426
              M + D
Sbjct: 419 FDMMNRRD 426



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 68/148 (45%), Gaps = 7/148 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL +  +M      P + TI S+L  C  + + +L + I+  +  + L+P      S++ 
Sbjct: 446 ALFLFNEMRSDNQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVD 505

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K  D D+A    + +   +L+     ++AI+ GY      + AL    +  ++ +KP
Sbjct: 506 MYCKCGDLDTAQRCFNQMPSHDLVS----WSAIIVGYGYHGKGEAALRFYSKFLESGMKP 561

Query: 150 DSQTFSYLIHNCSNE---EDIIKYYEQL 174
           +   F  ++ +CS+    E  +  YE +
Sbjct: 562 NHVIFLSVLSSCSHNGLVEQGLNIYESM 589


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/274 (21%), Positives = 116/274 (42%), Gaps = 11/274 (4%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y  LI       K+  A  V + M     VP   T+++++    ++       RI+  + 
Sbjct: 367 YTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSME 426

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
              L PN   + ++I    K +  D A  +L  +K+    P    YN ++ G  +  DV+
Sbjct: 427 ARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVE 486

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALI 190
            A     EM +A  KPD  T++ LI       N +      + + S     +++V+ +L+
Sbjct: 487 AARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLDDMSS-----SRFVYSSLV 541

Query: 191 NAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNL 250
           +     G+ E    +  + E    + S+ ++ L+  L    R  +A+ ++  I++ G   
Sbjct: 542 DGLCKSGKLEGGCMLFHEMERSGVANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGMP- 600

Query: 251 EPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW 284
            P A  ++I  L   G++N    + +E+    +W
Sbjct: 601 HPYAYNSIISALIKSGKVNEGQAVYQEM--TRWW 632



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/311 (20%), Positives = 128/311 (41%), Gaps = 45/311 (14%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACE------ESYE 61
           TP+ A+Y  L+   C + ++  A+D++ ++V     P   T  S++          E+Y+
Sbjct: 291 TPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYK 350

Query: 62  F-----------------NLVR------------RIYPMICHHNLKPNSETFRSMISLNV 92
                              L+R             +Y  +  H   P+  T  +MI    
Sbjct: 351 LFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLS 410

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
           K     +A  +   ++   L P   +Y+A++ G  + + +  AL +L +M++A   PD+ 
Sbjct: 411 KAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTI 470

Query: 153 TFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA 209
           T++ LI       D+     +++++  AG +   Y +  LI+     G  + A  V+ D 
Sbjct: 471 TYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLDD- 529

Query: 210 EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG-CNLEPRAVIALIEHLNSEGEL 268
              + S   V S+LV  L   G+     +++ E++ +G  N + R    LI HL     +
Sbjct: 530 ---MSSSRFVYSSLVDGLCKSGKLEGGCMLFHEMERSGVANSQTRT--RLIFHLCKANRV 584

Query: 269 NRLIQLLEEVH 279
           +  + L   + 
Sbjct: 585 DEAVSLFNAIR 595



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 108/244 (44%), Gaps = 10/244 (4%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+   Y  LI   C   K+  AL+++ QM +    P T T N ++    +S +    R
Sbjct: 430 LAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAAR 489

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
             +  +     KP+  T+  +IS   K  + D+A  +LDD+          +Y++++ G 
Sbjct: 490 AFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLDDMSSSRF-----VYSSLVDGL 544

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI-HNCSNE--EDIIKYYEQLKSAGGQITK 183
            +   ++G  M+  EME++ V  +SQT + LI H C     ++ +  +  ++   G    
Sbjct: 545 CKSGKLEGGCMLFHEMERSGV-ANSQTRTRLIFHLCKANRVDEAVSLFNAIRKE-GMPHP 602

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
           Y + ++I+A    G+  + + V  +     K      +AL++ +    R   A   Y E+
Sbjct: 603 YAYNSIISALIKSGKVNEGQAVYQEMTRWWKPDRVTYNALLNGMIGANRMDRAHYYYLEM 662

Query: 244 KEAG 247
              G
Sbjct: 663 TGRG 666



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 72/333 (21%), Positives = 140/333 (42%), Gaps = 54/333 (16%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQG-ELVPSTETINSILHACEESYE------ 61
           P   ++  LIT  C   +   A  V+ +M +   + PS +T N +LH   +S +      
Sbjct: 152 PDVETWNVLITGYCLAREPEEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMD 211

Query: 62  -FNLVRRIYP------------------MICHHNLKPNS---------ETFRSMISLNVK 93
            F  VRR  P                  MI  H+L   +          T+ ++++   K
Sbjct: 212 HFEAVRRSMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAK 271

Query: 94  IKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQT 153
            K    A +L++ +      PT + YNA++ G  +   ++ A+ +L+++      PD  T
Sbjct: 272 NKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVT 331

Query: 154 FSYLIHNCSNEE---DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV--VLD 208
           ++ LI     E+   +  K ++++ S G  +    + ALI      G+  +A  V   + 
Sbjct: 332 YTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMT 391

Query: 209 AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEG 266
           +   V     + S ++  L+  GR   A+ +++ ++  G  L P  V+  ALI  L    
Sbjct: 392 SHGCVPDVVTL-STMIDGLSKAGRIGAAVRIFKSMEARG--LAPNEVVYSALIHGLCKAR 448

Query: 267 ELNRLIQLLEEVH----DPD-----YWMDGCCR 290
           +++  +++L ++      PD       +DG C+
Sbjct: 449 KMDCALEMLAQMKKAFCTPDTITYNILIDGLCK 481



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 87/210 (41%), Gaps = 9/210 (4%)

Query: 83  TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM 142
           T  +++ +  + K    A +LL +       P    +N ++ GY   ++ + A  V++EM
Sbjct: 121 TGNALLDVFARTKRHREAGNLLKNELATIFRPDVETWNVLITGYCLAREPEEAFAVIREM 180

Query: 143 EQA-NVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA--GGQITKYVFMALINAYTTCGEF 199
           E+   V P  +T + ++H       ++   +  ++      ++   F  LIN     G  
Sbjct: 181 EEDFGVAPSLKTHNLVLHGLCKSGKVLAAMDHFEAVRRSMPVSAATFSILINGLVKAGMM 240

Query: 200 EKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
            +A  +  +             +A+V+ LA + +  +A+ + E+I   GC        AL
Sbjct: 241 IQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNAL 300

Query: 259 IEHLNSEGELNRLIQLLEEVHDPDYWMDGC 288
           +  L   G L   I LL ++ D     +GC
Sbjct: 301 LNGLCKMGRLEEAIDLLRKIVD-----NGC 325


>gi|225457536|ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial [Vitis vinifera]
 gi|297745544|emb|CBI40709.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 83/163 (50%), Gaps = 3/163 (1%)

Query: 47  ETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDD 106
           + +N I+    +S + N       M+  + L P + T  ++I+        + A ++ ++
Sbjct: 257 QLLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEE 316

Query: 107 LKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSN 163
           LKE  LMP    YNA++ GY +   ++ A  ++ EME++   PD  T+S LI    N   
Sbjct: 317 LKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGR 376

Query: 164 EEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
            E      ++++++G +   YVF  ++ +Y   G+++K+ QV+
Sbjct: 377 WESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVL 419



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/202 (19%), Positives = 92/202 (45%), Gaps = 3/202 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           ++P +A+   +IT   +  +   A  + E++ +G L+P T   N++L    ++       
Sbjct: 287 LSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAE 346

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            I   +      P+  T+  +I        ++SA  +L +++   + P + +++ I+A Y
Sbjct: 347 SIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASY 406

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
             +   Q +  VL+EM  + V PD   ++ +I     C+  +  +  +++++  G Q   
Sbjct: 407 RDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDA 466

Query: 184 YVFMALINAYTTCGEFEKARQV 205
             +  LI+ +   G   KA ++
Sbjct: 467 VTWNTLIDCHCKSGHHNKAEEL 488



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 71/153 (46%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P + ++  LI   C     + A ++ E M +    P T T N ++++  E   +  V+
Sbjct: 462 VQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVK 521

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +    L  N  T+ +++ +  +   F  A   L+ +K + L P+++MYNA++  Y
Sbjct: 522 TLLGKMQSQGLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNALINAY 581

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159
            ++   + A+   + M    +KP     + LI+
Sbjct: 582 AQRGLSEQAINAFRVMRADGLKPSVLVLNSLIN 614


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 122/254 (48%), Gaps = 14/254 (5%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETF--RSM 87
           A ++  +M++  +VP+  +++ +L AC      +L ++I+ ++    L   SE F   ++
Sbjct: 336 AFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVI--KLGYESELFVGNAL 393

Query: 88  ISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANV 147
           + +  K ++ +++  +   L++ N +     +N I+ GY +    + AL V +EM  A+V
Sbjct: 394 MDVYAKCRNMENSLEIFRSLRDANEVS----WNTIIVGYCQSGFAEDALSVFQEMRAAHV 449

Query: 148 KPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204
                TFS ++  C+N   I   ++ +  ++ +       V  +LI+ Y  CG    A +
Sbjct: 450 LSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALK 509

Query: 205 VVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
           V    E  ++      +A++S  A HGR +DA+ ++  + ++         +AL+    S
Sbjct: 510 VF---ESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGS 566

Query: 265 EGELNRLIQLLEEV 278
            G +N+ + L   +
Sbjct: 567 TGLVNQGLSLFNSM 580



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 32/151 (21%), Positives = 65/151 (43%), Gaps = 4/151 (2%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +I   C       AL V ++M    ++ +  T +S+L AC  +       +I+ +I
Sbjct: 420 SWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLI 479

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
                  ++    S+I    K      A  + + + + +++     +NAI++GY      
Sbjct: 480 EKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVS----WNAIISGYALHGRA 535

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163
             AL +   M +++ KP+  TF  L+  C +
Sbjct: 536 TDALELFNRMNKSDTKPNDVTFVALLSVCGS 566


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 111/253 (43%), Gaps = 10/253 (3%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQ--GELVPSTETINSILHACEESY 60
           ++L   P + SY  +I   C   +   ALD+V++M +  G   P   + N+++H   +  
Sbjct: 187 SELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQG 246

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           E +    ++  +    + P+  T+ S++    K +  D A  +L  + +  + P    YN
Sbjct: 247 EVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYN 306

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI-----HNCSNEEDIIKYYEQLK 175
           AI+ GY      + +  + ++M    + PD+ TFS  +     H  S + + I  Y   K
Sbjct: 307 AIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTK 366

Query: 176 SAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTS 234
                I  Y    L++ Y T G F     +    A+  + S     + L+SA A  G   
Sbjct: 367 GHMPDIVSYSI--LLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMD 424

Query: 235 DAIIVYEEIKEAG 247
           +A++V+ E++  G
Sbjct: 425 EAMLVFTEMQGQG 437



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 81/462 (17%), Positives = 172/462 (37%), Gaps = 87/462 (18%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P + ++   ++  C   +   A ++ + M     +P   + + +LH       F  + 
Sbjct: 333 LIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMN 392

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +    +  N      +IS + K    D A  +  +++   + P    Y+ +++ +
Sbjct: 393 NLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAF 452

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAG----- 178
            R   +  A+    +M    ++P++  +  LIH      D++K   +  ++ S G     
Sbjct: 453 CRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRPN 512

Query: 179 --------------GQI-----------------TKYVFMALINAYTTCGEFEKARQVVL 207
                         G++                 T   F +LI+ Y   G+ EKA   VL
Sbjct: 513 IVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFG-VL 571

Query: 208 DAEIPVKSRSEV--KSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLN 263
           DA + V    +V   + LVS     G+  D +I++ E+      ++P  V    +++ L 
Sbjct: 572 DAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHK--KVKPTTVTYNIVLDGLL 629

Query: 264 SEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQL-KDKFKDDEMAM 322
             G  +   ++  E+ D    +D              + +   LLK L ++   D+ + +
Sbjct: 630 RAGRTSAAKKMFHEMIDSGTAVD--------------IDTYKILLKGLCRNDLTDEAITL 675

Query: 323 EYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHL 382
            +    + C+       D+ I                    L+ ++ A    R  + A+ 
Sbjct: 676 FHKLGAMDCKF------DITI--------------------LNTMINALYKVRRREEAND 709

Query: 383 IWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424
           ++     +GL  NV +Y  M +  L  G+ + A  + S M K
Sbjct: 710 LFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEK 751



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 77/158 (48%), Gaps = 7/158 (4%)

Query: 5   LEITPSSASYKKLITYSC---DLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESY 60
           + I P++A Y  LI   C   DL+K    +   E M +G   P+    +SI+H+ C E  
Sbjct: 471 IGIEPNTAVYHSLIHGFCMHGDLVKAKEFIS--EMMSKGLHRPNIVFFSSIIHSLCIEGR 528

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
             +  + ++ ++ H   +P   TF S+I     +   + A+ +LD +  + + P     N
Sbjct: 529 VMD-AQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNN 587

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            +++GY +   +   L++ +EM    VKP + T++ ++
Sbjct: 588 TLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVL 625



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 77/174 (44%), Gaps = 10/174 (5%)

Query: 114 PTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---Y 170
           P    +N ++ G+F++ +V  A  +  EM Q  V PD  T++ ++        + K    
Sbjct: 230 PDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFV 289

Query: 171 YEQLKSAGGQITKYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSA 226
             Q+   G +     + A+I+ Y+  G ++++    R++     IP    +   S+ +S+
Sbjct: 290 LRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIP---DTVTFSSFMSS 346

Query: 227 LASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           L  HGR+ DA  +++ +   G   +  +   L+    +EG    +  L   + D
Sbjct: 347 LCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMAD 400


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/410 (17%), Positives = 176/410 (42%), Gaps = 12/410 (2%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           + +  +   LI   C L +V  AL  ++Q +     P   T N+ ++   ++       +
Sbjct: 248 SATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALK 307

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +  ++      P+  T+  +++   K    + A  +L+ + +   +P  + +N ++A   
Sbjct: 308 VMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALC 367

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKYYEQLKSAGGQITKY 184
               ++ AL + +++    V PD  TF+ LI+      D    ++ +E++K++G    + 
Sbjct: 368 TGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEV 427

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEI 243
            +  LI+   + G+  KA  ++ D E     RS +  + ++  L    R  +A  V++++
Sbjct: 428 TYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQM 487

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQL 301
              G +        LI+ L  + +++   +L+ ++       +      ++ H  +   +
Sbjct: 488 DLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDI 547

Query: 302 SSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSR 361
             A D+L+ +     + ++          C+   T     Q+ L +L+ ++ + G+ P+ 
Sbjct: 548 KKAADILETMTANGFEVDVVTYGTLINGLCKAGRT-----QVALKVLRGMRIK-GMRPTP 601

Query: 362 KCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGN 411
           K  + +L +     +++ A  +++E    G P + L+Y  +++     G 
Sbjct: 602 KAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGG 651



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 88/434 (20%), Positives = 163/434 (37%), Gaps = 36/434 (8%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P   ++  L+   C   +V  A+ ++E+M    + P   T  +++    E        
Sbjct: 177 IKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAAL 236

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R+   +          T   +I+   K+   + A   +         P    YN  + G 
Sbjct: 237 RVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGL 296

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITK 183
            +   V  AL V+  M Q    PD  T++ +++  C N   E+      Q+   G     
Sbjct: 297 CQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDI 356

Query: 184 YVFMALINAYTTCGEFEK----ARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
             F  LI A  T    E+    ARQV +    P      +   L++AL   G    A+ +
Sbjct: 357 TTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNI---LINALCKVGDPHLALRL 413

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDP---------DYWMDGCCR 290
           +EE+K +GC  +      LI++L S G+L + + LL+++            +  +DG C+
Sbjct: 414 FEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCK 473

Query: 291 LILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQF 350
            +       ++  A ++  Q+  +             +  C+    D        D  + 
Sbjct: 474 KM-------RIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKID--------DAFEL 518

Query: 351 IKDEL--GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLA 408
           I   +  GL P+    + +L       D+K+A  I +     G   +V++Y  +      
Sbjct: 519 INQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCK 578

Query: 409 SGNRKSASKLLSKM 422
           +G  + A K+L  M
Sbjct: 579 AGRTQVALKVLRGM 592



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 74/155 (47%), Gaps = 2/155 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSIL-HACEESYEFNLV 65
           I+ ++ ++  LI   C   K+  A +++ QM+   L P+  T NSIL H C++  +    
Sbjct: 492 ISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQG-DIKKA 550

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             I   +  +  + +  T+ ++I+   K      A  +L  ++   + PT   YN ++  
Sbjct: 551 ADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQS 610

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160
            FR+ +++ AL + +EM +    PD+ T+  +   
Sbjct: 611 LFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRG 645


>gi|115486223|ref|NP_001068255.1| Os11g0607100 [Oryza sativa Japonica Group]
 gi|77551887|gb|ABA94684.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645477|dbj|BAF28618.1| Os11g0607100 [Oryza sativa Japonica Group]
          Length = 671

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 107/227 (47%), Gaps = 15/227 (6%)

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           E  LVR +        LKPN+ T+ ++I  + K   FD A+ L++ +K+   +P    YN
Sbjct: 342 EMLLVRMV-----EQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYN 396

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSA 177
           A++ G+ +K  +Q A  VL+      +K D  T++ LI     +  I   +  ++++   
Sbjct: 397 AVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVEN 456

Query: 178 GGQITKYVFMALINAYTTCGEFEKAR----QVVLDAEIPVKSRSEVKSALVSALASHGRT 233
           G       + +LI+ Y    + E+++    + ++   +P K   +  +++++     GR+
Sbjct: 457 GCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTK---QTYTSMIAGYCKVGRS 513

Query: 234 SDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           + A+ V+E + + GC  +     ALI  L  E  L     L E + D
Sbjct: 514 TLALRVFERMVQNGCFADSITYGALISGLCKESRLEEAKALYEGMLD 560



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 88/190 (46%), Gaps = 5/190 (2%)

Query: 75  HNLKPNSETFRSMISLNVKIKDFDSAYSL-LDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
             LKPN  T  ++I    KI   + A+ L L  +K  +  P    Y  ++ GY R+  + 
Sbjct: 280 RGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLA 339

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKYVFMALI 190
            A M+L  M +  +KP++ T++ LI          + +E   ++K  G     Y + A+I
Sbjct: 340 RAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVI 399

Query: 191 NAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
           + +   G+ ++A +V+ +     +K      + L++     G  + A+ +++ + E GC 
Sbjct: 400 DGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCC 459

Query: 250 LEPRAVIALI 259
            +  A  +LI
Sbjct: 460 PDIEAYTSLI 469



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 62/325 (19%), Positives = 125/325 (38%), Gaps = 44/325 (13%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A D+V +M    L    ET N +L    E+  F   R+++  +    + P+  +FR+++ 
Sbjct: 130 AADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAGVCPDERSFRALVV 189

Query: 90  L---NVKIKDFDS--------AYSL------------------------LDDLKEMNLMP 114
           +     K+++ D+         +SL                           + E    P
Sbjct: 190 VCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPP 249

Query: 115 TASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CS---NEEDIIKY 170
               Y A + G  +++ V+ A  VL+EM    +KP+  T + LI   C     E     +
Sbjct: 250 NVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLF 309

Query: 171 YEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALAS 229
            + +KS+  +   + +  +I  Y   G+  +A  +++   E  +K  +   + L+     
Sbjct: 310 LKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCK 369

Query: 230 HGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC 289
            G    A  +  ++K+ G         A+I+    +G++    ++L          D   
Sbjct: 370 GGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKIT 429

Query: 290 RLIL---HCVRFKQLSSATDLLKQL 311
             IL   HC +   ++ A DL  ++
Sbjct: 430 YTILITEHC-KQGHITYALDLFDRM 453



 Score = 39.3 bits (90), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 27/137 (19%), Positives = 59/137 (43%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  LIT  C    +  ALD+ ++MV+    P  E   S++    +  +    ++ +   
Sbjct: 429 TYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKC 488

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               L P  +T+ SMI+   K+     A  + + + +      +  Y A+++G  ++  +
Sbjct: 489 LMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRL 548

Query: 133 QGALMVLKEMEQANVKP 149
           + A  + + M    + P
Sbjct: 549 EEAKALYEGMLDKRLVP 565


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 120/267 (44%), Gaps = 14/267 (5%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +I+   ++ +   AL++  +M++ ++ P   T+ ++L  C  S    L R+I+  I
Sbjct: 177 SWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWI 236

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
            +H    N +   ++I L  K  + + A+ L + L+  +++     +N ++ GY      
Sbjct: 237 DNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVIS----WNTLIGGYAYINHH 292

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI-----IKYYEQLKSAGGQITKYVFM 187
           + AL+V +EM +    P+  T   ++  C++   I     I  Y   K  G      +  
Sbjct: 293 KEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQT 352

Query: 188 ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           +LI+ Y  CG  E A QV     I  KS S   +A++   A HGR   A  +   +K+ G
Sbjct: 353 SLIDMYAKCGNIEAANQVF--DTILNKSLSSC-NAMIFGFAMHGRADAAFDLLSRMKKDG 409

Query: 248 CNLEPRAVIALIEHLNSEG--ELNRLI 272
              +    + L+   +  G  +L R I
Sbjct: 410 IEPDDITFVGLLSACSHAGLSDLGRKI 436



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/250 (19%), Positives = 106/250 (42%), Gaps = 37/250 (14%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL++   M+   L P++ T   +  +C +S      ++I+  I  + L  +     S+IS
Sbjct: 62  ALNLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLIS 121

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASM---------------------------YNAI 122
           +  +    + A+ + D     +++   +M                           +NA+
Sbjct: 122 MYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAM 181

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGG 179
           ++GY      + AL +  EM + +VKPD  T + ++  C++  ++    + +  + + G 
Sbjct: 182 ISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGF 241

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAI 237
                +  ALI+ Y+ CGE E+A  +    +       +V S   L+   A      +A+
Sbjct: 242 GSNLKLVNALIDLYSKCGEMERAHGLFEGLQ-----YKDVISWNTLIGGYAYINHHKEAL 296

Query: 238 IVYEEIKEAG 247
           +V++E+ + G
Sbjct: 297 LVFQEMLKLG 306



 Score = 39.7 bits (91), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 18/139 (12%)

Query: 114 PTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQ 173
           P    +N ++ G+    D   AL +   M    + P+S TF +L  +C+      K  ++
Sbjct: 41  PNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAKS----KAAQE 96

Query: 174 LKSAGGQITKY-------VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALV 224
            K    QI KY       V  +LI+ Y   G  E A +V         S  +V S  A++
Sbjct: 97  GKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKV-----FDTSSHRDVVSYTAMI 151

Query: 225 SALASHGRTSDAIIVYEEI 243
           +  AS G    A  +++EI
Sbjct: 152 TGYASRGNMDKAQKMFDEI 170


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 126/284 (44%), Gaps = 6/284 (2%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQ--GELVPSTETINSILHACEESY 60
            +L   P+  SY  L+   CD  +   AL++++ M    G+  P   +  ++++   +  
Sbjct: 154 TQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEG 213

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           + +     Y  +    + PN  T+ S+I+   K +  D A  +L  + +  +MP    YN
Sbjct: 214 DLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYN 273

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI-HNCSNEE--DIIKYYEQLKSA 177
           +I+ GY      + A+  LK+M    V+PD  T++ L+ + C N    +  K ++ +   
Sbjct: 274 SIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKR 333

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDA 236
           G +     +  L+  Y T G   +   ++ L     +     V S L+ A A  G+   A
Sbjct: 334 GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQA 393

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           ++V+ ++++ G N +      +I  L   G +   ++  E++ D
Sbjct: 394 MLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID 437



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 78/189 (41%), Gaps = 35/189 (18%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA----------- 55
           + P + +Y  +I   C   +V  A+   EQM+   L P     NS++H+           
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAK 464

Query: 56  -----------CEESYEFNLV-------------RRIYPMICHHNLKPNSETFRSMISLN 91
                      C ++  FN +              +++ ++    +KP+  T+ ++I   
Sbjct: 465 ELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 524

Query: 92  VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151
                 D A  LL  +  + + P    YN ++ GY +   ++ AL++ +EME + V PD 
Sbjct: 525 CLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDI 584

Query: 152 QTFSYLIHN 160
            T++ ++  
Sbjct: 585 ITYNIILQG 593



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 103/261 (39%), Gaps = 10/261 (3%)

Query: 1   MHAKLE------ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILH 54
           MH  L+      I P+   +  LI       KV  A+ V  +M Q  L P T T  +++ 
Sbjct: 358 MHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIG 417

Query: 55  ACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMP 114
              +S       R +  +    L P +  + S+I        +D A  L+ ++ +  +  
Sbjct: 418 ILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL 477

Query: 115 TASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYY 171
               +N+I+  + ++  V  +  +   M +  VKPD  T+S LI         ++  K  
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLL 537

Query: 172 EQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASH 230
             + S G +     +  LIN Y      E A  +  + E    S   +  + ++  L   
Sbjct: 538 ASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQT 597

Query: 231 GRTSDAIIVYEEIKEAGCNLE 251
            RT+ A  +Y  I E+G  LE
Sbjct: 598 RRTAAAKELYVGITESGTQLE 618


>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 614

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 120/249 (48%), Gaps = 11/249 (4%)

Query: 11  SASYKKLITYSCDLLKVHVALDVVEQMVQGE-LVPSTETINSILHACEESYEFNLVRRIY 69
           S S+  +I           A++V  +M + +   P   ++ S+L AC E  +  L R + 
Sbjct: 188 SVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELGDLELGRWVE 247

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
             +    +  NS    ++IS+  K  + +SA  + D +   +++     +NA+++GY + 
Sbjct: 248 GFVVERGMTLNSYIGSALISMYAKCGELESARRIFDGMAARDVIT----WNAVISGYAQN 303

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS--NEEDIIKYYEQLKSAGG-QITKYVF 186
                A+++   M++  V  +  T + ++  C+     D+ K  ++  S  G Q   +V 
Sbjct: 304 GMADEAILLFHGMKEDCVTANKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVA 363

Query: 187 MALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA 246
            ALI+ Y   G  + A++V  D  +P K+ +   +A++SALA+HG+  +A+ +++ + + 
Sbjct: 364 TALIDMYAKSGSLDNAQRVFKD--MPQKNEAS-WNAMISALAAHGKAKEALSLFQHMSDE 420

Query: 247 GCNLEPRAV 255
           G    P  +
Sbjct: 421 GGGARPNDI 429


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/282 (20%), Positives = 118/282 (41%), Gaps = 6/282 (2%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
            P   +Y  LI+  C + +V  A  ++E MV+ +  P+  T N+++H   ++      R 
Sbjct: 504 VPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEARE 563

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +   +      P+  T+ +++  + +    + A  LL D+    L P    Y A+++G  
Sbjct: 564 VLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLC 623

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE--DIIKYYEQLKSAGGQITKY 184
           +   +  A  V  +M+ +   P+  T++ LI   CS  +    +K + ++  AG      
Sbjct: 624 KANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHV 683

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRS---EVKSALVSALASHGRTSDAIIVYE 241
           V+  L       G   +A +++ +    ++S +   EV    V  L   G+   A+    
Sbjct: 684 VYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVR 743

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY 283
           ++   G    P    +L+  L   G+      +LEE+ D  Y
Sbjct: 744 DMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEIMDLAY 785



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 108/277 (38%), Gaps = 21/277 (7%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K +  P+  +   LI   C   ++  A +V++ MV     P   T N+++H    + +  
Sbjct: 535 KRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTE 594

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             R +   +    L PN  T+ +++S   K      A  +   +K     P    Y A++
Sbjct: 595 RARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALI 654

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA------ 177
            G+     V G L +  EM  A + PD   +  L           +  E L+        
Sbjct: 655 LGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRS 714

Query: 178 ---GGQITKYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASH 230
              G ++ ++    L+ A    G+ E A    R +V   ++P   R    ++LV+ L   
Sbjct: 715 EAWGDEVYRFAVDGLLEA----GKMEMALGFVRDMVRGGQLPAPERC---ASLVAGLCKS 767

Query: 231 GRTSDAIIVYEEIKEAGCNLEPRAVIA-LIEHLNSEG 266
           G+  +A  V EEI +     + R   A  +E +  +G
Sbjct: 768 GQGGEARAVLEEIMDLAYGGKARGKAAKFVEEMVGKG 804



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/285 (20%), Positives = 121/285 (42%), Gaps = 13/285 (4%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           ++P S SY  LI       K++ A ++ ++++   + PST    S++H    +  F+  R
Sbjct: 319 VSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAR 378

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +      P+  T+  MI  + K    + A  L+  + E   +P    YN +M G 
Sbjct: 379 ELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGL 438

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK----------- 175
            +   V+ AL++  EME+    P+ ++ + +I     +  I +  ++ K           
Sbjct: 439 CKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRM 498

Query: 176 SAGGQITKYV-FMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRT 233
           +  G +   V +  LI+   +    + AR ++ D  +   K     ++ L+  L   GR 
Sbjct: 499 TDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRI 558

Query: 234 SDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            +A  V + +  +G + +      L+      G+  R  +LL ++
Sbjct: 559 KEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDM 603



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/258 (20%), Positives = 103/258 (39%), Gaps = 17/258 (6%)

Query: 4   KLEITPSSASYKKLI---------TYSCDLLKVHVALDVVEQMVQGELVPSTETINSILH 54
           +L  TP+  S+  +I           +C   K+  A  ++++M     VP   T ++++ 
Sbjct: 456 RLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLIS 515

Query: 55  ACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMP 114
                   +  R +   +     KP   T  ++I    K      A  +LD +      P
Sbjct: 516 GLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSP 575

Query: 115 TASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE--DIIKYY 171
               YN ++ G+ R    + A  +L +M    + P+  T++ L+   C      +    +
Sbjct: 576 DVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVF 635

Query: 172 EQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE---VKSALVSALA 228
            Q+KS+G     + + ALI  + + G+ +   +  L  E+     S    V   L + L 
Sbjct: 636 AQMKSSGCAPNLFTYTALILGFCSAGQVDGGLK--LFGEMVCAGISPDHVVYGTLAAELC 693

Query: 229 SHGRTSDAIIVYEEIKEA 246
             GR++ A+ +  E +E+
Sbjct: 694 KSGRSARALEILREGRES 711



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 77/431 (17%), Positives = 161/431 (37%), Gaps = 68/431 (15%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
            Y  +I   C   ++  A+ + E+M +  + P + +   ++    ++ + N  R ++  +
Sbjct: 290 GYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKL 349

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
            H  + P++  + S+I        FD A  L  D+      P+   YN ++    ++  +
Sbjct: 350 LHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGML 409

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK----YV 185
           + A  ++K+M +    PD  T++ ++      S  E+ +  + +++  G    +     +
Sbjct: 410 EEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTI 469

Query: 186 FMAL-----INAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDA 236
            + L     I+     G+ ++A    +++  D  +P        S L+S L S  R  DA
Sbjct: 470 ILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVP---DVVTYSTLISGLCSIARVDDA 526

Query: 237 IIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL- 293
             + E++ +  C  +P  V    LI  L   G +    ++L+ +       D      L 
Sbjct: 527 RHLLEDMVKRQC--KPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLV 584

Query: 294 --HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFI 351
             HC R  Q   A +LL  +  +                                     
Sbjct: 585 HGHC-RAGQTERARELLSDMVAR------------------------------------- 606

Query: 352 KDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGN 411
               GL P+      L+     A  L  A  ++ + +++G   N+ +Y  +   F ++G 
Sbjct: 607 ----GLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQ 662

Query: 412 RKSASKLLSKM 422
                KL  +M
Sbjct: 663 VDGGLKLFGEM 673



 Score = 41.6 bits (96), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 61/315 (19%), Positives = 129/315 (40%), Gaps = 40/315 (12%)

Query: 5   LEITP--SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           LEI P  +S++Y  ++   C   +V  AL++   M +  +  +  +++S+L    +S   
Sbjct: 137 LEIMPVANSSAYNIVVVALCKAARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDSGRI 196

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDF------DSAYSLLDDLKEMNLMPTA 116
           +   ++Y     +  +P       +++LNV ++ F      D A  LL  + +    P  
Sbjct: 197 DEALQVYR---ENRREP------CLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDE 247

Query: 117 SMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYL-------IHNCSNE--EDI 167
             Y  ++ G  +   V+ A+ +  + E  +    S +   L       +  C N+  ++ 
Sbjct: 248 VSYCTVLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEA 307

Query: 168 IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR---QVVLDAEIPVKSRSEVKSALV 224
           ++ +E++         + +  LI+     G+   AR   Q +L +   V   +   ++L+
Sbjct: 308 VQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHS--GVTPSTVAYTSLI 365

Query: 225 SALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNR----LIQLLEEVHD 280
             L       DA  ++ ++   GC   P     +I+     G L      + +++E+ H 
Sbjct: 366 HGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHV 425

Query: 281 PDY-----WMDGCCR 290
           PD       MDG C+
Sbjct: 426 PDVVTYNTVMDGLCK 440


>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 749

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 150/323 (46%), Gaps = 38/323 (11%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +I+  CD  +   +L     M+   + P+  T+ S+L AC      +L  +I+ + 
Sbjct: 227 SWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLS 286

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
                  +     S++ L +K      A  L + ++ +NL+     +NA++AG+ +  D+
Sbjct: 287 IKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVT----WNAMIAGHAKMMDL 342

Query: 133 -----------QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQI 181
                        AL + +++ ++ +KPD  TFS ++  CSN    +   EQ +   GQI
Sbjct: 343 AEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSN----LVALEQGEQIHGQI 398

Query: 182 TK-------YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRT 233
            K        V  AL++ Y  CG  +KA +  L  E+P  SR+ +  +++++  A HG +
Sbjct: 399 IKSGVLADVVVGTALVSMYNKCGSIDKASKAFL--EMP--SRTMISWTSMITGFARHGLS 454

Query: 234 SDAIIVYEEIKEAGCNLEPR-----AVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC 288
             A+ ++E+++  G  ++P       V++   H     E     +L+++ ++    MD  
Sbjct: 455 QQALQLFEDMRLVG--IKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHF 512

Query: 289 CRLILHCVRFKQLSSATDLLKQL 311
             LI   +R  ++  A D++ ++
Sbjct: 513 ACLIDMYLRLGRVEEAFDVVHKM 535



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 111/262 (42%), Gaps = 22/262 (8%)

Query: 12  ASYKKLITYSCDLLKVH----VALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           A + K++  + D +  H     AL + +++ +  + P   T +S+L  C          +
Sbjct: 334 AGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQ 393

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM--YNAIMAG 125
           I+  I    +  +     +++S+  K    D A       K    MP+ +M  + +++ G
Sbjct: 394 IHGQIIKSGVLADVVVGTALVSMYNKCGSIDKAS------KAFLEMPSRTMISWTSMITG 447

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE--EDIIKYYEQLKSAGGQITK 183
           + R    Q AL + ++M    +KP+  TF  ++  CS+    D   YY +L      I  
Sbjct: 448 FARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKP 507

Query: 184 YV--FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
            +  F  LI+ Y   G  E+A  VV   ++  +    + S L++   SHG++       E
Sbjct: 508 VMDHFACLIDMYLRLGRVEEAFDVV--HKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAE 565

Query: 242 EIKEAGCNLEPRAVIALIEHLN 263
           ++      L+P+ V   +  LN
Sbjct: 566 QL----LKLKPKDVETYVSLLN 583


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 92/434 (21%), Positives = 178/434 (41%), Gaps = 34/434 (7%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVV---EQMVQGELVPSTETINSILHACEESYEFNL 64
            P++ SY  +I     L K     D V   ++M +  +VP+  T N+++    +  +   
Sbjct: 185 APNAFSYNVVIA---GLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLES 241

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
             R++  +  H LKPN  T+  ++S   +        ++LD++    ++P    Y+ +  
Sbjct: 242 GFRLWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFD 301

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKS---AGGQI 181
           G+ R  D Q  L + +E  +  VK  + T S L++    +  I K  E L++   +G   
Sbjct: 302 GHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQ 361

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVY 240
           T  ++  LIN Y   G+ E A  +    +  +     +  +AL++ L    R ++A  + 
Sbjct: 362 TTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLV 421

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQ 300
            E+++ G N        LI+     G+L +   +L ++ +          L  + V +  
Sbjct: 422 IEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKG--------LKPNVVSYGS 473

Query: 301 LSSA-------TDLLKQLKDKFKDDEMAMEYHFSEI---FCQIATTDPPDVQIGLDLLQF 350
           + +A        + +  L D F  D +     ++ I   + +  +TD         L + 
Sbjct: 474 IVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQ-----AFMLAEK 528

Query: 351 IKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASG 410
           +K   G+PPS    + L+        +  A  +     N GL  +V+SY  +  A     
Sbjct: 529 MKSS-GVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRS 587

Query: 411 NRKSASKLLSKMPK 424
           N   A +L  +M K
Sbjct: 588 NTDRALELEKEMWK 601



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 118/282 (41%), Gaps = 32/282 (11%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M ++L I P   +Y  LI     + ++  A D+V +M +  + PS ET N+++ A   + 
Sbjct: 389 MKSRL-IRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAG 447

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           +      I   +    LKPN  ++ S+++   K      A ++LDD+   +++P A +YN
Sbjct: 448 QLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYN 507

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQ 180
           AI+  Y        A M+ ++M+ + V P   T++ LI     +  I +  E L S    
Sbjct: 508 AIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDS---- 563

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
           +  Y     + +Y T                           L+SA      T  A+ + 
Sbjct: 564 LRNYGLAPDVISYNT---------------------------LISACCYRSNTDRALELE 596

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPD 282
           +E+ + G    PR    L   L   G ++ +  L +++ D D
Sbjct: 597 KEMWKCGIKPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDKD 638



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/241 (19%), Positives = 112/241 (46%), Gaps = 4/241 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  L++  C   ++     V+++M   ++VP   T + +      + +   + 
Sbjct: 254 LKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTML 313

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++       +K  + T   +++   K      A  +L  L    L+ T  +YN ++ GY
Sbjct: 314 SLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGY 373

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITK 183
            +  D++GA  + ++M+   ++PD  T++ LI+     E I + ++   +++  G   + 
Sbjct: 374 CQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSV 433

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             F  LI+AY   G+ EK   ++ D  E  +K       ++V+A   +G+  +A+ + ++
Sbjct: 434 ETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDD 493

Query: 243 I 243
           +
Sbjct: 494 M 494



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 91/213 (42%), Gaps = 6/213 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  SY  ++   C   K+  A+ +++ M   +++P  +  N+I+ A  E    +   
Sbjct: 464 LKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAF 523

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +    + P+  T+  +I    K      A  LLD L+   L P    YN +++  
Sbjct: 524 MLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISAC 583

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITK 183
             + +   AL + KEM +  +KP  +T+  L  +        ++   Y+Q+         
Sbjct: 584 CYRSNTDRALELEKEMWKCGIKPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDKDVVPCS 643

Query: 184 YVFMALINAYTTCGE---FEKARQVVLDAEIPV 213
            ++  +++AY  CGE    E  R+ + D  I V
Sbjct: 644 GIYNIMVDAYAKCGEESKVEALRKEMSDKGIAV 676



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 83/400 (20%), Positives = 160/400 (40%), Gaps = 58/400 (14%)

Query: 35  EQMVQGELVPSTETINSILHACEESYEFN----LVRRIYPMICHHNLKPNSETFRSMISL 90
           E +V     P T T N  + AC  + + +    ++RR   M C     PN+ ++  +I+ 
Sbjct: 141 ELLVAARARPDTFTWNKAVQACVVAGDLDEAVGMLRR---MGCDGAPAPNAFSYNVVIAG 197

Query: 91  NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD 150
             K      A  L D++ E  ++P    YN ++ G+ +K D++    +  +M +  +KP+
Sbjct: 198 LWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPN 257

Query: 151 SQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAE 210
             T++ L+               L  AG                  GE       VLD  
Sbjct: 258 VITYNVLLSG-------------LCRAG----------------RMGE----TAAVLDE- 283

Query: 211 IPVKSRSEVKSALVSALA--SHGRTSDA---IIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
             + SR  V      ++    H RT D+   + ++EE  + G  +       L+  L  +
Sbjct: 284 --MASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKD 341

Query: 266 GELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQLSSATDLLKQLKDKF-KDDEMAM 322
           G++++  ++L+ + +            LI    +   L  A  + +Q+K +  + D +  
Sbjct: 342 GKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITY 401

Query: 323 EYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHL 382
               + +      T+  D+ I +       ++ G+ PS +  + L+ A   A  L++  +
Sbjct: 402 NALINGLGKVERITEAHDLVIEM-------EKNGVNPSVETFNTLIDAYGRAGQLEKCFI 454

Query: 383 IWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           I  + +  GL  NV+SY  +  AF  +G    A  +L  M
Sbjct: 455 ILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDM 494


>gi|356522596|ref|XP_003529932.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Glycine max]
          Length = 827

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 145/313 (46%), Gaps = 10/313 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           ITPS  SY  +I   C    +  A +V+  +++  L P+  T   ++    +  +     
Sbjct: 462 ITPSLVSYNHMILGHCKKGCMDDAHEVMNGIIESGLKPNAITYTILMEGSFKKGDCEHAF 521

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +    + P   TF S+I+   K+     A   L+   + + +PT+  YN I+ GY
Sbjct: 522 NMFDQMVAAGIVPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDGY 581

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-C-SNEEDI-IKYYEQLKSAGGQITK 183
            ++  +  A  V +EM ++ + P+  T++ LI+  C SN+ D+ +K ++ +K  G ++  
Sbjct: 582 VKEGAIDSAESVYREMCRSEISPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELDI 641

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
            V+  LI  +    + E A +      E+ +   + V + ++SA  +      A+ +++E
Sbjct: 642 TVYATLIAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNIMISAYRNLNNMEAALNLHKE 701

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDYWMDGCCRLILHCVRF 298
           +       + +   +LI+ L  EG+L+  + L  E+      PD +M     LI      
Sbjct: 702 MINNKIPCDLKIYTSLIDGLLKEGKLSFALDLYSEMLCRGIVPDIFMYNV--LINGLCNH 759

Query: 299 KQLSSATDLLKQL 311
            QL +A  +LK++
Sbjct: 760 GQLENAGKILKEM 772



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/284 (21%), Positives = 129/284 (45%), Gaps = 16/284 (5%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P+  ++  +I   C + +V  A D +   ++   +P++ T N I+    +    +   
Sbjct: 532 IVPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVKEGAIDSAE 591

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +Y  +C   + PN  T+ S+I+   K    D A  + DD+K   L    ++Y  ++AG+
Sbjct: 592 SVYREMCRSEISPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELDITVYATLIAGF 651

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITK 183
            + +D++ A     ++ +  + P++  ++ +I    N +N E  +  ++++ +       
Sbjct: 652 CKMQDMENACKFFSKLLEVGLTPNTIVYNIMISAYRNLNNMEAALNLHKEMINNKIPCDL 711

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-----SALVSALASHGRTSDAII 238
            ++ +LI+     G+   A    LD    +  R  V      + L++ L +HG+  +A  
Sbjct: 712 KIYTSLIDGLLKEGKLSFA----LDLYSEMLCRGIVPDIFMYNVLINGLCNHGQLENAGK 767

Query: 239 VYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHD 280
           + +E+   G N+ P  ++   LI     EG L    +L +E+ D
Sbjct: 768 ILKEMD--GNNITPTVLLYNTLIAGHFKEGNLQEAFRLHDEMLD 809



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 82/173 (47%), Gaps = 5/173 (2%)

Query: 79  PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMV 138
           P+  T+ ++I   V++ +F  A  L D++ +  +    ++  +++ GY  + DV  AL +
Sbjct: 290 PSEGTYAAVIGACVRLGNFGEALRLKDEMVDSRVPVNVAVATSLIKGYCVRGDVNSALRL 349

Query: 139 LKEMEQANVKPDSQTFSYLIHNCS---NEEDIIKYYEQLKSAGGQITKYVFMALINAYTT 195
             E+ +  V P+   FS LI  CS   N E   + Y ++K  G Q T ++   L+  +  
Sbjct: 350 FDEVVEVGVTPNVAIFSVLIEWCSKIGNVEKANELYTRMKCMGLQPTVFILNFLLKGFRK 409

Query: 196 CGEFEKARQVVLDAEIPVKSRSEVKSALVSA-LASHGRTSDAIIVYEEIKEAG 247
               E A  ++LD  +     S V   +V   L   G+ ++A  +++++   G
Sbjct: 410 QNLLENA-YLLLDGAVENGIASVVTYNIVLLWLCELGKVNEACNLWDKMIGKG 461



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/157 (19%), Positives = 78/157 (49%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           ++ +TP++  Y  +I+   +L  +  AL++ ++M+  ++    +   S++    +  + +
Sbjct: 669 EVGLTPNTIVYNIMISAYRNLNNMEAALNLHKEMINNKIPCDLKIYTSLIDGLLKEGKLS 728

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               +Y  +    + P+   +  +I+        ++A  +L ++   N+ PT  +YN ++
Sbjct: 729 FALDLYSEMLCRGIVPDIFMYNVLINGLCNHGQLENAGKILKEMDGNNITPTVLLYNTLI 788

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160
           AG+F++ ++Q A  +  EM    + PD  T+  L++ 
Sbjct: 789 AGHFKEGNLQEAFRLHDEMLDKGLVPDDTTYDILVNG 825



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/226 (20%), Positives = 95/226 (42%), Gaps = 14/226 (6%)

Query: 43  VPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYS 102
           + S  T N +L    E  + N    ++  +    + P+  ++  MI  + K    D A+ 
Sbjct: 428 IASVVTYNIVLLWLCELGKVNEACNLWDKMIGKGITPSLVSYNHMILGHCKKGCMDDAHE 487

Query: 103 LLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS 162
           +++ + E  L P A  Y  +M G F+K D + A  +  +M  A + P   TF+ +I+   
Sbjct: 488 VMNGIIESGLKPNAITYTILMEGSFKKGDCEHAFNMFDQMVAAGIVPTDYTFNSIINGLC 547

Query: 163 NEEDIIKYYEQLKSAGGQI---TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEV 219
               + +  ++L +   Q    T   +  +I+ Y   G  + A  V  +       RSE+
Sbjct: 548 KVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVKEGAIDSAESVYREM-----CRSEI 602

Query: 220 K------SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALI 259
                  ++L++      +   A+ +++++K  G  L+      LI
Sbjct: 603 SPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELDITVYATLI 648



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 59/136 (43%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L   PS  +Y  +I     L     AL + ++MV   +  +     S++       + N
Sbjct: 285 ELGWVPSEGTYAAVIGACVRLGNFGEALRLKDEMVDSRVPVNVAVATSLIKGYCVRGDVN 344

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              R++  +    + PN   F  +I    KI + + A  L   +K M L PT  + N ++
Sbjct: 345 SALRLFDEVVEVGVTPNVAIFSVLIEWCSKIGNVEKANELYTRMKCMGLQPTVFILNFLL 404

Query: 124 AGYFRKKDVQGALMVL 139
            G+ ++  ++ A ++L
Sbjct: 405 KGFRKQNLLENAYLLL 420



 Score = 42.4 bits (98), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 52/269 (19%), Positives = 108/269 (40%), Gaps = 29/269 (10%)

Query: 33  VVEQMVQGELVPSTETINSILHACEESYEFNLV-RRIYPMICHHNLKPNS-----ETFRS 86
           ++ + V G+  P+ + +  +L  C E Y F L   R++  +    ++ N      E FR+
Sbjct: 118 LLNKYVFGDSAPAAKVLVELLVECAERYGFKLSDSRVFNYLLISYVRANKITEAVECFRA 177

Query: 87  MIS---------LNVKIKDF------DSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131
           M+          +NV +         + A+ L D++ E  +         +M    +   
Sbjct: 178 MLEDGVVPWVPFVNVLLTAMIRRNMVEDAHRLFDEMAERRIYGDCYTLQVLMRACLKGGK 237

Query: 132 VQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMA 188
              A     +     +K D+ ++S +I       D+    K  E  +  G   ++  + A
Sbjct: 238 FVEAERYFGQAAGRGLKLDAASYSIVIQAVCRGSDLDLASKLVEGDEELGWVPSEGTYAA 297

Query: 189 LINAYTTCGEFEKARQV---VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
           +I A    G F +A ++   ++D+ +PV     V ++L+      G  + A+ +++E+ E
Sbjct: 298 VIGACVRLGNFGEALRLKDEMVDSRVPVNV--AVATSLIKGYCVRGDVNSALRLFDEVVE 355

Query: 246 AGCNLEPRAVIALIEHLNSEGELNRLIQL 274
            G          LIE  +  G + +  +L
Sbjct: 356 VGVTPNVAIFSVLIEWCSKIGNVEKANEL 384


>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 755

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 150/323 (46%), Gaps = 38/323 (11%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +I+  CD  +   +L     M+   + P+  T+ S+L AC      +L  +I+ + 
Sbjct: 233 SWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLS 292

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
                  +     S++ L +K      A  L + ++ +NL+     +NA++AG+ +  D+
Sbjct: 293 IKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVT----WNAMIAGHAKMMDL 348

Query: 133 -----------QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQI 181
                        AL + +++ ++ +KPD  TFS ++  CSN    +   EQ +   GQI
Sbjct: 349 AEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSN----LVALEQGEQIHGQI 404

Query: 182 TK-------YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRT 233
            K        V  AL++ Y  CG  +KA +  L  E+P  SR+ +  +++++  A HG +
Sbjct: 405 IKSGVLADVVVGTALVSMYNKCGSIDKASKAFL--EMP--SRTMISWTSMITGFARHGLS 460

Query: 234 SDAIIVYEEIKEAGCNLEPR-----AVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC 288
             A+ ++E+++  G  ++P       V++   H     E     +L+++ ++    MD  
Sbjct: 461 QQALQLFEDMRLVG--IKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHF 518

Query: 289 CRLILHCVRFKQLSSATDLLKQL 311
             LI   +R  ++  A D++ ++
Sbjct: 519 ACLIDMYLRLGRVEEAFDVVHKM 541



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 111/262 (42%), Gaps = 22/262 (8%)

Query: 12  ASYKKLITYSCDLLKVH----VALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           A + K++  + D +  H     AL + +++ +  + P   T +S+L  C          +
Sbjct: 340 AGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQ 399

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM--YNAIMAG 125
           I+  I    +  +     +++S+  K    D A       K    MP+ +M  + +++ G
Sbjct: 400 IHGQIIKSGVLADVVVGTALVSMYNKCGSIDKAS------KAFLEMPSRTMISWTSMITG 453

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE--EDIIKYYEQLKSAGGQITK 183
           + R    Q AL + ++M    +KP+  TF  ++  CS+    D   YY +L      I  
Sbjct: 454 FARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKP 513

Query: 184 YV--FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
            +  F  LI+ Y   G  E+A  VV   ++  +    + S L++   SHG++       E
Sbjct: 514 VMDHFACLIDMYLRLGRVEEAFDVV--HKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAE 571

Query: 242 EIKEAGCNLEPRAVIALIEHLN 263
           ++      L+P+ V   +  LN
Sbjct: 572 QL----LKLKPKDVETYVSLLN 589


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 93/462 (20%), Positives = 189/462 (40%), Gaps = 61/462 (13%)

Query: 10  SSASYKKLITYSCDLLK-VHVALDVVEQMVQGELVPSTETINSILHACEESYE-FNLVRR 67
           SS++   L+  SC  +  ++ AL +V        +P   + N+IL A   + +   +   
Sbjct: 130 SSSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEG 189

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           I+  +    + PN  T+  +I       + +       +++    +P    YN I+  Y 
Sbjct: 190 IFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYC 249

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYV-- 185
           + + +  A  +L+ M    + P+  +++ +I+    E  + +  E L+    +  +YV  
Sbjct: 250 KLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKR--RYVPD 307

Query: 186 ---FMALINAYTTCGEFEKARQVVLDAEIPVKSRSE---VKSALVSALASHGRTSDAIIV 239
              F  LIN Y   G F +A  +VL AE+     S      + L++++   G  + A+  
Sbjct: 308 RVTFNTLINGYCNVGNFHQA--LVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEF 365

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY---------WMDGCCR 290
            +++++ G +   R    LI+  + +G L +  Q+++E+ +  +          ++G   
Sbjct: 366 LDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALING--- 422

Query: 291 LILHCVRFKQLSSATDLLKQLKDK-FKDDEMAMEYHFSEIFCQ--------------IAT 335
              HC+   ++  A+ LL+++ ++ F  D ++     S  FC+              +A 
Sbjct: 423 ---HCI-LGRMEDASGLLQEMIERGFIPDVVSYSTIISG-FCRNQELEKAFQLKVEMVAK 477

Query: 336 TDPPDVQIGLDLLQFIKDE---------------LGLPPSRKCLDFLLGACVNARDLKRA 380
              PDV     L+Q +  +               LGLPP       L+ A     DL +A
Sbjct: 478 GISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKA 537

Query: 381 HLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
             +  E    G   ++++Y  +   F      K A +LL K+
Sbjct: 538 LRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKL 579



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/286 (20%), Positives = 126/286 (44%), Gaps = 8/286 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  SY  +I   C   ++    +++E+M +   VP   T N++++       F+   
Sbjct: 269 LNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQAL 328

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +  + L PN  T+ ++I+   K  + + A   LD +++  L P    Y  ++ G+
Sbjct: 329 VLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGF 388

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
            ++  ++ A  ++KEM +    P   T++ LI+        ED     +++   G     
Sbjct: 389 SQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDV 448

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRS---EVKSALVSALASHGRTSDAIIVY 240
             +  +I+ +    E EKA Q  L  E+  K  S      S+L+  L    R  +   ++
Sbjct: 449 VSYSTIISGFCRNQELEKAFQ--LKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLF 506

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
           +E+   G   +     +LI     EG+L++ ++L +E+    +  D
Sbjct: 507 QEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPD 552



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 69/340 (20%), Positives = 136/340 (40%), Gaps = 58/340 (17%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           +K    P   ++  LI   C++   H AL +  +MV+  L P+  T  +++++  ++   
Sbjct: 300 SKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNL 359

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA- 121
           N        +    L PN  T+ ++I    +      AY ++ ++ E    PT   YNA 
Sbjct: 360 NRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNAL 419

Query: 122 ----------------------------------IMAGYFRKKDVQGALMVLKEMEQANV 147
                                             I++G+ R ++++ A  +  EM    +
Sbjct: 420 INGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGI 479

Query: 148 KPDSQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204
            PD  T+S LI     +    ++   ++++ S G    +  + +LINAY   G+ +KA +
Sbjct: 480 SPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALR 539

Query: 205 VVLDAEIPVKSRSE---VKSALVSALASHGRTSDAI---------------IVYEEIKEA 246
             L  E+  K  S      + L++      RT +A                I Y  + + 
Sbjct: 540 --LHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDN 597

Query: 247 GCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
             NLE ++ +AL++    +G +N   ++LE +    Y ++
Sbjct: 598 CNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLN 637



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 118/281 (41%), Gaps = 24/281 (8%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   SY  +I+  C   ++  A  +  +MV   + P   T +S++    +      V  +
Sbjct: 446 PDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDL 505

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    L P+  T+ S+I+      D D A  L D++ +    P    YN ++ G+ +
Sbjct: 506 FQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNK 565

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMA 188
           +   + A  +L ++      P+  T++ LI NC+N E         KSA         +A
Sbjct: 566 QSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLE--------FKSA---------LA 608

Query: 189 LINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           L+  +   G   +A +V+    +   K   EV + ++   +  G    A  +Y+E+  +G
Sbjct: 609 LMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSG 668

Query: 248 CNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC 288
                  ++AL + L  EG+   L QLL      DY +  C
Sbjct: 669 FAPHSVTIMALAKSLYHEGKEVELNQLL------DYTLKSC 703


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 126/283 (44%), Gaps = 6/283 (2%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQ--GELVPSTETINSILHACEESYE 61
           +L   P+  SY  L+   CD  +   AL++++ M    G+  P   +  ++++   +  +
Sbjct: 155 QLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGD 214

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
            +     Y  +    + PN  T+ S+I+   K +  D A  +L  + +  +MP    YN+
Sbjct: 215 LDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNS 274

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI-HNCSNEE--DIIKYYEQLKSAG 178
           I+ GY      + A+  LK+M    V+PD  T++ L+ + C N    +  K ++ +   G
Sbjct: 275 IVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRG 334

Query: 179 GQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAI 237
            +     +  L+  Y T G   +   ++ L     +     V S L+ A A  G+   A+
Sbjct: 335 LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAM 394

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           +V+ ++++ G N +      +I  L   G +   ++  E++ D
Sbjct: 395 LVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID 437



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 78/189 (41%), Gaps = 35/189 (18%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA----------- 55
           + P + +Y  +I   C   +V  A+   EQM+   L P     NS++H+           
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAK 464

Query: 56  -----------CEESYEFNLV-------------RRIYPMICHHNLKPNSETFRSMISLN 91
                      C ++  FN +              +++ ++    +KP+  T+ ++I   
Sbjct: 465 ELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 524

Query: 92  VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151
                 D A  LL  +  + + P    YN ++ GY +   ++ AL++ +EME + V PD 
Sbjct: 525 CLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDI 584

Query: 152 QTFSYLIHN 160
            T++ ++  
Sbjct: 585 ITYNIILQG 593



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 103/261 (39%), Gaps = 10/261 (3%)

Query: 1   MHAKLE------ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILH 54
           MH  L+      I P+   +  LI       KV  A+ V  +M Q  L P T T  +++ 
Sbjct: 358 MHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIG 417

Query: 55  ACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMP 114
              +S       R +  +    L P +  + S+I        +D A  L+ ++ +  +  
Sbjct: 418 ILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL 477

Query: 115 TASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYY 171
               +N+I+  + ++  V  +  +   M +  VKPD  T+S LI         ++  K  
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLL 537

Query: 172 EQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASH 230
             + S G +     +  LIN Y      E A  +  + E    S   +  + ++  L   
Sbjct: 538 ASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQT 597

Query: 231 GRTSDAIIVYEEIKEAGCNLE 251
            RT+ A  +Y  I E+G  LE
Sbjct: 598 RRTAAAKELYVGITESGTQLE 618


>gi|357473969|ref|XP_003607269.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
 gi|355508324|gb|AES89466.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
          Length = 970

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 129/280 (46%), Gaps = 10/280 (3%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           EI PS  ++  LI   C   ++  A  + ++MV+ ++ P+  T N ++    +++  +  
Sbjct: 493 EIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIEGYCKAHNMDKA 552

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +   + H+ L P++ T+R +IS         +A   +DDL + NL      Y+A++ G
Sbjct: 553 FELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLNEMCYSALLHG 612

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA---GGQIT 182
           Y  +  +  AL    EM Q  +  D    + LI     ++D+ + +  LK     G +  
Sbjct: 613 YCGQGRLTEALSASCEMIQRGINMDLVCHAVLIDGAMKQQDMKRLFGLLKKMYDQGLRPD 672

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEV--KSALVSALASHGRTSDAIIVY 240
             ++ ++I+AY+  G F+K+ +  LD  +  K    V   +A ++ L   G    A  ++
Sbjct: 673 SVIYTSMIDAYSKEGSFKKSGE-CLDLMVTEKCFPNVVTYTAFMNGLCKVGEIDRAGHLF 731

Query: 241 EEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEV 278
           E++  A  N+ P +V     ++ L  EG +     L  E+
Sbjct: 732 EKMLTA--NISPNSVTYGCFLDSLTKEGNMKEATDLHHEM 769



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/284 (20%), Positives = 127/284 (44%), Gaps = 5/284 (1%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           MH+ + +  +  +Y  LI   C    + VA     +M++  +  +    NS+++   +  
Sbjct: 384 MHS-MNLPLNDVTYSILIDSFCKRGMLDVAESYFGRMIEDGIRETIYPYNSLINGHCKFG 442

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           + +    +Y  + +  L+P + TF ++IS   K    + A+ L  ++ E  + P+   + 
Sbjct: 443 DLSAAEFLYTKMINEGLEPTATTFTTLISGYCKDLQVEKAFKLYREMNEKEIAPSVYTFT 502

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA--- 177
           A++ G     ++  A  +  EM +  +KP   T++ +I       ++ K +E L+     
Sbjct: 503 ALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIEGYCKAHNMDKAFELLEDMLHN 562

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDA 236
           G     Y +  LI+   + G    A+  + D  +  +K      SAL+      GR ++A
Sbjct: 563 GLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLNEMCYSALLHGYCGQGRLTEA 622

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           +    E+ + G N++      LI+    + ++ RL  LL++++D
Sbjct: 623 LSASCEMIQRGINMDLVCHAVLIDGAMKQQDMKRLFGLLKKMYD 666



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 79/366 (21%), Positives = 143/366 (39%), Gaps = 50/366 (13%)

Query: 84  FRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME 143
           + S+I+ + K  D  +A  L   +    L PTA+ +  +++GY +   V+ A  + +EM 
Sbjct: 431 YNSLINGHCKFGDLSAAEFLYTKMINEGLEPTATTFTTLISGYCKDLQVEKAFKLYREMN 490

Query: 144 QANVKPDSQTFSYLIHN-CSNEE--DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFE 200
           +  + P   TF+ LI+  CS  E  +  K ++++     + T+  +  +I  Y      +
Sbjct: 491 EKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIEGYCKAHNMD 550

Query: 201 KARQVVLD----AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI 256
           KA +++ D      +P    +     L+S L S GR S A    +++ +    L      
Sbjct: 551 KAFELLEDMLHNGLVP---DTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLNEMCYS 607

Query: 257 ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQ--LSSATDLLKQLKDK 314
           AL+     +G L   +    E+      MD  C  +L     KQ  +     LLK++ D+
Sbjct: 608 ALLHGYCGQGRLTEALSASCEMIQRGINMDLVCHAVLIDGAMKQQDMKRLFGLLKKMYDQ 667

Query: 315 FKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLD--------- 365
                                   PD  I   ++     E     S +CLD         
Sbjct: 668 ---------------------GLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFP 706

Query: 366 -------FLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKL 418
                  F+ G C    ++ RA  ++++   A +  N ++Y     +    GN K A+ L
Sbjct: 707 NVVTYTAFMNGLC-KVGEIDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDL 765

Query: 419 LSKMPK 424
             +M K
Sbjct: 766 HHEMLK 771



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 71/168 (42%), Gaps = 9/168 (5%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y   +   C + ++  A  + E+M+   + P++ T    L +  +         +
Sbjct: 706 PNVVTYTAFMNGLCKVGEIDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDL 765

Query: 69  YPMICHH----NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
                HH     L  N+ T+  +I    K+     A  +L ++ E  + P    Y+ I+ 
Sbjct: 766 -----HHEMLKGLLANTATYNILIRGFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIY 820

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE 172
            + R  DV  A+ +   M +  V+PDS  F+ LI+ C     + K +E
Sbjct: 821 EHCRSGDVGAAVELWDTMLRKGVEPDSVAFNLLIYGCCVNGALDKAFE 868



 Score = 45.8 bits (107), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 63/292 (21%), Positives = 123/292 (42%), Gaps = 20/292 (6%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           +V  A+ V+  M+   L+P   T+++IL+      +F LV  ++    +  +KP+  T  
Sbjct: 163 RVFDAVVVLRLMLGNTLLPEVRTLSAILNGLLRIRKFILVWEVFDESVNAGVKPDPYTCS 222

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           ++I    ++KDF  A   +  ++      +   YN ++ G  +   V  AL V K + + 
Sbjct: 223 AVIRSLCELKDFCRAKEKILWMESNRFDLSIVTYNVLIHGLCKGGGVLEALEVRKSLREK 282

Query: 146 NVKPDSQTFSYLIHN-CSNEE--DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
            +K D  T+  L+   C  ++  D I    ++   G   T+     L++     G  + A
Sbjct: 283 GLKEDVVTYCTLVLGFCRVQQFDDGICLMNEMVELGFVPTEAAVSGLVDGLRKKGNIDSA 342

Query: 203 RQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEH 261
             +V+            V +AL++AL        A ++Y+ +      L       LI+ 
Sbjct: 343 YDLVVKLGRFGFLPNLFVYNALINALCKGEDLDKAELLYKNMHSMNLPLNDVTYSILIDS 402

Query: 262 LNSEGELN-------RLIQ--LLEEVHDPDYWMDGCCRLILHCVRFKQLSSA 304
               G L+       R+I+  + E ++  +  ++G      HC +F  LS+A
Sbjct: 403 FCKRGMLDVAESYFGRMIEDGIRETIYPYNSLING------HC-KFGDLSAA 447



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 35/184 (19%), Positives = 83/184 (45%), Gaps = 6/184 (3%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
            LK +  T+ +++    +++ FD    L++++ E+  +PT +  + ++ G  +K ++  A
Sbjct: 283 GLKEDVVTYCTLVLGFCRVQQFDDGICLMNEMVELGFVPTEAAVSGLVDGLRKKGNIDSA 342

Query: 136 LMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINA 192
             ++ ++ +    P+   ++ LI+     ED+ K    Y+ + S    +    +  LI++
Sbjct: 343 YDLVVKLGRFGFLPNLFVYNALINALCKGEDLDKAELLYKNMHSMNLPLNDVTYSILIDS 402

Query: 193 YTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLE 251
           +   G  + A        E  ++      ++L++     G  S A  +Y ++   G  LE
Sbjct: 403 FCKRGMLDVAESYFGRMIEDGIRETIYPYNSLINGHCKFGDLSAAEFLYTKMINEG--LE 460

Query: 252 PRAV 255
           P A 
Sbjct: 461 PTAT 464


>gi|15226583|ref|NP_179165.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216226|sp|Q9ZQF1.1|PP152_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g15630, mitochondrial; Flags: Precursor
 gi|4335729|gb|AAD17407.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251331|gb|AEC06425.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 627

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 92/425 (21%), Positives = 162/425 (38%), Gaps = 26/425 (6%)

Query: 2   HAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYE 61
           H +LE T S+  +  L+   C L  V  A++    M +    P TET N IL        
Sbjct: 147 HDRLE-TKSTILFDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNR 205

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
                  Y  +    +K N  TF  MI++  K      A   L  ++   + PT   YN 
Sbjct: 206 IENAWVFYADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNT 265

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQI 181
           ++ G+  +  ++GA +++ EM+    +PD QT++ ++    NE    +   ++K  G   
Sbjct: 266 LVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRASEVLREMKEIGLVP 325

Query: 182 TKYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAI 237
               +  LI   +  G+ E A     ++V    +P        + L+  L    +   A 
Sbjct: 326 DSVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPT---FYTYNTLIHGLFMENKIEAAE 382

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC-------CR 290
           I+  EI+E G  L+      LI      G+  +   L    HD +   DG          
Sbjct: 383 ILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFAL----HD-EMMTDGIQPTQFTYTS 437

Query: 291 LILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQF 350
           LI    R  +   A +L +++  K    ++ M     +  C I   D         LL+ 
Sbjct: 438 LIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDR-----AFSLLKE 492

Query: 351 IKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASG 410
           + D + + P     + L+         + A  +  E +  G+  + +SY  +   +   G
Sbjct: 493 M-DMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKG 551

Query: 411 NRKSA 415
           + K A
Sbjct: 552 DTKHA 556



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 91/203 (44%), Gaps = 3/203 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I   S +Y  LI   C       A  + ++M+   + P+  T  S+++      +     
Sbjct: 393 IVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREAD 452

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +    +KP+     +++  +  I + D A+SLL ++  M++ P    YN +M G 
Sbjct: 453 ELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGL 512

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY---EQLKSAGGQITK 183
             +   + A  ++ EM++  +KPD  +++ LI   S + D    +   +++ S G   T 
Sbjct: 513 CGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTL 572

Query: 184 YVFMALINAYTTCGEFEKARQVV 206
             + AL+   +   E E A +++
Sbjct: 573 LTYNALLKGLSKNQEGELAEELL 595



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/155 (21%), Positives = 70/155 (45%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P       L+   C +  +  A  ++++M    + P   T N ++       +F   R +
Sbjct: 465 PDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEAREL 524

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    +KP+  ++ ++IS   K  D   A+ + D++  +   PT   YNA++ G  +
Sbjct: 525 MGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKGLSK 584

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163
            ++ + A  +L+EM+   + P+  +F  +I   SN
Sbjct: 585 NQEGELAEELLREMKSEGIVPNDSSFCSVIEAMSN 619


>gi|147859909|emb|CAN83144.1| hypothetical protein VITISV_040783 [Vitis vinifera]
          Length = 724

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 83/163 (50%), Gaps = 3/163 (1%)

Query: 47  ETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDD 106
           + +N I+    +S + N       M+  + L P + T  ++I+        + A ++ ++
Sbjct: 328 QLLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEE 387

Query: 107 LKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSN 163
           LKE  LMP    YNA++ GY +   ++ A  ++ EME++   PD  T+S LI    N   
Sbjct: 388 LKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGR 447

Query: 164 EEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
            E      ++++++G +   YVF  ++ +Y   G+++K+ QV+
Sbjct: 448 WESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVL 490



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/202 (19%), Positives = 92/202 (45%), Gaps = 3/202 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           ++P +A+   +IT   +  +   A  + E++ +G L+P T   N++L    ++       
Sbjct: 358 LSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAE 417

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            I   +      P+  T+  +I        ++SA  +L +++   + P + +++ I+A Y
Sbjct: 418 SIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASY 477

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
             +   Q +  VL+EM  + V PD   ++ +I     C+  +  +  +++++  G Q   
Sbjct: 478 RDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDA 537

Query: 184 YVFMALINAYTTCGEFEKARQV 205
             +  LI+ +   G   KA ++
Sbjct: 538 VTWNTLIDCHCKSGHHNKAEEL 559


>gi|125569916|gb|EAZ11431.1| hypothetical protein OsJ_01299 [Oryza sativa Japonica Group]
          Length = 563

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 107/227 (47%), Gaps = 15/227 (6%)

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           E  LVR +        LKPN+ T+ ++I  + K   FD A+ L++ +K+   +P    YN
Sbjct: 234 EMLLVRMV-----EQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYN 288

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSA 177
           A++ G+ +K  +Q A  VL+      +K D  T++ LI     +  I   +  ++++   
Sbjct: 289 AVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVEN 348

Query: 178 GGQITKYVFMALINAYTTCGEFEKAR----QVVLDAEIPVKSRSEVKSALVSALASHGRT 233
           G       + +LI+ Y    + E+++    + ++   +P K   +  +++++     GR+
Sbjct: 349 GCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTK---QTYTSMIAGYCKVGRS 405

Query: 234 SDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           + A+ V+E + + GC  +     ALI  L  E  L     L E + D
Sbjct: 406 TLALRVFERMVQNGCFADSITYGALISGLCKESRLEEAKALYEGMLD 452



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 88/190 (46%), Gaps = 5/190 (2%)

Query: 75  HNLKPNSETFRSMISLNVKIKDFDSAYSL-LDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
             LKPN  T  ++I    KI   + A+ L L  +K  +  P    Y  ++ GY R+  + 
Sbjct: 172 RGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLA 231

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKYVFMALI 190
            A M+L  M +  +KP++ T++ LI          + +E   ++K  G     Y + A+I
Sbjct: 232 RAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVI 291

Query: 191 NAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
           + +   G+ ++A +V+ +     +K      + L++     G  + A+ +++ + E GC 
Sbjct: 292 DGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCC 351

Query: 250 LEPRAVIALI 259
            +  A  +LI
Sbjct: 352 PDIEAYTSLI 361



 Score = 39.3 bits (90), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 27/137 (19%), Positives = 59/137 (43%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  LIT  C    +  ALD+ ++MV+    P  E   S++    +  +    ++ +   
Sbjct: 321 TYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKC 380

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               L P  +T+ SMI+   K+     A  + + + +      +  Y A+++G  ++  +
Sbjct: 381 LMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRL 440

Query: 133 QGALMVLKEMEQANVKP 149
           + A  + + M    + P
Sbjct: 441 EEAKALYEGMLDKRLVP 457


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/287 (20%), Positives = 128/287 (44%), Gaps = 9/287 (3%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +I P+  ++  LI   C + ++  A+ ++ +M    + P+  T N ++    +  E    
Sbjct: 224 KIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKA 283

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +  ++    ++PN  T+ S++     +K+ + A  + + +    + P    Y+ ++ G
Sbjct: 284 TSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMING 343

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE--DIIKYYEQLKSAGGQIT 182
             + K V  A+ + KEM   N+ P++ T+S LI   C +    D+    +++ + G    
Sbjct: 344 LCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPAN 403

Query: 183 KYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
              + +L+N      + +KA  ++    +  ++      + LV  L  +GR  DA  +Y+
Sbjct: 404 IITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQ 463

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC 288
           ++   G  L  R    +I  L  EG  +  + LL ++ D     +GC
Sbjct: 464 DLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMED-----NGC 505



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 93/430 (21%), Positives = 167/430 (38%), Gaps = 56/430 (13%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALD----VVEQMVQGELVPSTETINSILHACEES 59
           KL   P + +   L+   C   KV  AL+    V+ +    + V     IN +  + E  
Sbjct: 116 KLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLINGLCKSGETR 175

Query: 60  YEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMY 119
               L+R+I  ++    ++P+   + ++I    K K    AY L  ++    + P    +
Sbjct: 176 AALQLLRKIEGLLL---VRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTF 232

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK---S 176
           N+++ G+     ++ A+ +L EM   NV P+  TF+ LI     E ++ K    L     
Sbjct: 233 NSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIK 292

Query: 177 AGGQITKYVFMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSD 235
            G +     + +L++ Y    E  KA+ V     +  V       S +++ L  +    +
Sbjct: 293 QGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDE 352

Query: 236 AIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL 293
           A+ +++E+     N+ P  V   +LI+ L   G ++            D W         
Sbjct: 353 AVKLFKEMHLK--NMTPNTVTYSSLIDGLCKSGRIS------------DVW--------- 389

Query: 294 HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKD 353
                       DL+ ++ ++ +   +          C+    D       + LL  +KD
Sbjct: 390 ------------DLIDEINNRGQPANIITYNSLLNGLCKNHQVDK-----AIALLTKMKD 432

Query: 354 ELGLPPSRKCLDFLL-GACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNR 412
           E G+ P       L+ G C N R LK A  I+++    G P N+  Y  M       G  
Sbjct: 433 E-GIQPDMSTYTTLVDGLCKNGR-LKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFF 490

Query: 413 KSASKLLSKM 422
             A  LLS+M
Sbjct: 491 DEALSLLSQM 500


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 123/278 (44%), Gaps = 11/278 (3%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVRR 67
           P+  +Y  L+T       V  AL ++E M++  L P   T NS+L   C+E    +    
Sbjct: 471 PTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILD-AHN 529

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           ++        +PN  T+ ++I    K+   D A  LL  + E+        Y+ ++ G  
Sbjct: 530 VFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLL 589

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQITKY 184
           +   ++ A++VL++M  A   PD+ T++ LI      +   + +    ++  AG   +  
Sbjct: 590 KVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVV 649

Query: 185 VFMALINAYTTCGEFEKARQVVLD--AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
            +  L +     G F++A + +LD  A       +   S++V  L   GR ++A+  +E+
Sbjct: 650 TYTTLCHGLCRSGRFDEAVE-ILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEK 708

Query: 243 IKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEV 278
           +      + P  +   ALI+ L   G ++   + LE +
Sbjct: 709 MARDEV-VAPHVIAYSALIDGLCKAGRIDEAYEFLERM 745



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 54/276 (19%), Positives = 104/276 (37%), Gaps = 37/276 (13%)

Query: 9   PSSASYK-----------------------------KLITYS------CDLLKVHVALDV 33
           P++ +Y                              +LIT+       C   ++  A  V
Sbjct: 69  PNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRV 128

Query: 34  VEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVK 93
           V++MV    VP  E    +LHA  E    +     +  +      P++ T+ +M+    K
Sbjct: 129 VDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYK 188

Query: 94  IKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQT 153
               ++A  +L  L E    PT   +   + G  +  ++ GA      M Q  V P++ T
Sbjct: 189 AGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVT 248

Query: 154 FSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPV 213
           +  LI        +      L+    Q   + F +L++        E+A Q++    +P 
Sbjct: 249 YDALIDGLCKAGKLDIALGLLRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQLL--KAMPC 306

Query: 214 KSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
                  ++L++ L    R  +A  +++ +KE+GC+
Sbjct: 307 VPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCS 342



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/269 (18%), Positives = 108/269 (40%), Gaps = 4/269 (1%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  LI   C   +V  A     + +Q    P+  T ++++       E +   ++   +
Sbjct: 3   TYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEM 62

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
                 PN+ T+ ++++  +       A+SLL+ +      P    +  I+ G  ++ ++
Sbjct: 63  AGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEI 122

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMAL 189
           + A  V+ EM      PD +  + L+H        ++   +++Q+   G       +  +
Sbjct: 123 EAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTM 182

Query: 190 INAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC 248
           ++     G  E A  V+ L AE          +  V  L+  G  + A   ++ + + G 
Sbjct: 183 VDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGV 242

Query: 249 NLEPRAVIALIEHLNSEGELNRLIQLLEE 277
           +       ALI+ L   G+L+  + LL +
Sbjct: 243 SPNTVTYDALIDGLCKAGKLDIALGLLRD 271



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 41/200 (20%), Positives = 90/200 (45%), Gaps = 5/200 (2%)

Query: 83   TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM 142
            ++ ++I+  V  +  + A  LL  +      P A  Y  +M G F+    + A  +L+EM
Sbjct: 859  SYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEM 918

Query: 143  EQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEF 199
                  PD +T++ +I   S  + +     Y+E++     +    V+ +LI+A+    + 
Sbjct: 919  RSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKV 978

Query: 200  EKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALI 259
            + A +++  + I  +    + S +V +L  +  T  A+ V  E+K   C        +L 
Sbjct: 979  DDAWKLLRSSGI--EPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIHIWTSLA 1036

Query: 260  EHLNSEGELNRLIQLLEEVH 279
                +EG ++  ++L+ ++ 
Sbjct: 1037 TAYVAEGRVDEAVKLVNDLQ 1056



 Score = 44.7 bits (104), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 87/432 (20%), Positives = 167/432 (38%), Gaps = 75/432 (17%)

Query: 9    PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPS-----TETINSILHA--CEESYE 61
            P++ +Y  ++   C   +V  AL   E+M + E+V       +  I+ +  A   +E+YE
Sbjct: 681  PNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYE 740

Query: 62   FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
            F L R I          P+  TF  +I+        D+   L   + E         YNA
Sbjct: 741  F-LERMI-----RAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNA 794

Query: 122  IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQL-KSA 177
            ++  Y  K +   A  +L+EM+   +  ++ T   +I   C N+  ++ + Y+  + +  
Sbjct: 795  MINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPEDC 854

Query: 178  GGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDA- 236
              +I+          Y T           L   +    RSE    L+ A+ + G + DA 
Sbjct: 855  RDEIS----------YNT-----------LITSLVASRRSEQALELLRAMVADGGSPDAC 893

Query: 237  --IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPD---YWMDGCCRL 291
              + V + + +AG    P     L++ + S G            H PD   Y +     +
Sbjct: 894  NYMTVMDGLFKAG---SPEVAAKLLQEMRSRG------------HSPDLRTYTI-----M 933

Query: 292  ILHCVRFKQLSSATDLLKQ-LKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQF 350
            I    + KQL  A D  ++ L+   K D +       + FC+    D        D  + 
Sbjct: 934  ISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYS-SLIDAFCKADKVD--------DAWKL 984

Query: 351  IKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASG 410
            ++   G+ P+      ++ +    R   +A  + +E ++      +  +  +  A++A G
Sbjct: 985  LRSS-GIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIHIWTSLATAYVAEG 1043

Query: 411  NRKSASKLLSKM 422
                A KL++ +
Sbjct: 1044 RVDEAVKLVNDL 1055



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 89/456 (19%), Positives = 179/456 (39%), Gaps = 63/456 (13%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVV-EQMVQGELVPSTETINSILHA-CEESYEFNL 64
           ++P++ +Y  LI   C   K+ +AL ++ ++  Q  +       +S+LH  C+       
Sbjct: 242 VSPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQAGMF----AFSSLLHGLCQAHRLEEA 297

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
           ++ +  M C     PN   F S+++   + +  D A+ L D +KE         YN ++ 
Sbjct: 298 IQLLKAMPC----VPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLK 353

Query: 125 GYFRKKDVQGALMVLKEMEQA-NVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGG- 179
           G  + + +  A   ++ M +     P+  TFS LI    N   +    + YE++ +  G 
Sbjct: 354 GLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGI 413

Query: 180 QITKYVFMALINAYTTCGE---FEKARQVVLDAEIPVKSRSEVKS--------------- 221
              ++ +  L+      G+    E+  + +L+ E    S   + S               
Sbjct: 414 SPNRFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQVCRPTL 473

Query: 222 ----ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEE 277
                LV+ L+  G   DA+ + E + E+G + +     ++++ L  E       Q + +
Sbjct: 474 VTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKE-------QRILD 526

Query: 278 VHDP-DYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDE-MAMEYHFSEIFCQIAT 335
            H+     ++  CR          + + + L+  L    K DE + +     E+ C+  T
Sbjct: 527 AHNVFKRALERGCR--------PNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANT 578

Query: 336 TDPPDVQIGLDLLQFIKDEL---------GLPPSRKCLDFLLGACVNARDLKRAHLIWKE 386
                V  GL  +  ++D +         G  P     + L+      + L+ A  + +E
Sbjct: 579 VTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLRE 638

Query: 387 YENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
              AG   +V++Y  +      SG    A ++L  M
Sbjct: 639 MLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYM 674



 Score = 42.4 bits (98), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 33/171 (19%), Positives = 84/171 (49%), Gaps = 9/171 (5%)

Query: 79   PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMV 138
            P++  + +++    K    + A  LL +++     P    Y  +++G  + K +  A   
Sbjct: 890  PDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDY 949

Query: 139  LKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGE 198
             +EM + N+KPD+  +S LI      + +   ++ L+S+G + T  ++  ++++      
Sbjct: 950  FEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKLLRSSGIEPTITMYSTMVDSLCKNRG 1009

Query: 199  FEKARQVVLDAEIPVKSRS-----EVKSALVSALASHGRTSDAIIVYEEIK 244
             +KA +V+ +    +KS++      + ++L +A  + GR  +A+ +  +++
Sbjct: 1010 TDKALEVIRE----MKSKNCEPGIHIWTSLATAYVAEGRVDEAVKLVNDLQ 1056


>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
 gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
 gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 142/329 (43%), Gaps = 23/329 (6%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           +PS   Y  LI   C    +     +V+ M     VP+  T N+++H      + +    
Sbjct: 254 SPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVS 313

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +   +      PN  T+ ++I+  VK +    A  LL  ++E        +Y+ +++G F
Sbjct: 314 LLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLF 373

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKY 184
           ++   + A+ + ++M +   KP+   +S L+     E    +  +   ++ ++G     Y
Sbjct: 374 KEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAY 433

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE-VKSALVSALASHGRTSDAIIVYEEI 243
            + +L+  +   G  E+A QV  + +    SR++   S L+  L   GR  +A++V+ ++
Sbjct: 434 TYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKM 493

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV-------HDPDY-----WMDGCCRL 291
              G   +  A  ++I+ L   G ++  ++L  E+         PD       +DG C  
Sbjct: 494 LTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQ 553

Query: 292 ILHCVRFKQLSSATDLLKQLKDKFKDDEM 320
                  K +S A DLL  + D+  D ++
Sbjct: 554 -------KDISRAVDLLNSMLDRGCDPDV 575



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/293 (19%), Positives = 118/293 (40%), Gaps = 9/293 (3%)

Query: 2   HAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYE 61
           +  + I+P+  S+  +I   C L  V  A++V   M + + +P   T  +++    +   
Sbjct: 178 NMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEER 237

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
            +    +   +      P+   +  +I    K  D      L+D++     +P    YN 
Sbjct: 238 IDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNT 297

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE---DIIKYYEQLKSAG 178
           ++ G   K  +  A+ +L+ M  +   P+  T+  LI+    +    D ++    ++  G
Sbjct: 298 LIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERG 357

Query: 179 GQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAI 237
             + ++++  LI+     G+ E+A  +    AE   K    V S LV  L   G+ ++A 
Sbjct: 358 YHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAK 417

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCR 290
            +   +  +GC        +L++     G     +Q+ +E+        GC R
Sbjct: 418 EILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDK-----TGCSR 465



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 67/360 (18%), Positives = 139/360 (38%), Gaps = 40/360 (11%)

Query: 110 MNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI-- 167
           MN+ P    +N ++    + + V  A+ V + M +    PD  T+  L+     EE I  
Sbjct: 181 MNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDE 240

Query: 168 -IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVS 225
            +   ++++S G   +  ++  LI+     G+  +  ++V +  +     +EV  + L+ 
Sbjct: 241 AVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIH 300

Query: 226 ALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWM 285
            L   G+   A+ + E +  + C         LI  L  +      ++LL  + +  Y +
Sbjct: 301 GLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHL 360

Query: 286 DGCCRLILHCVRFKQLSS--ATDLLKQLKDKFKDDEMAMEYHFSEIFCQ----------- 332
           +     +L    FK+  +  A  L +++ +K     + +     +  C+           
Sbjct: 361 NQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEIL 420

Query: 333 ---IATTDPPDVQIGLDLLQ-FIK--------------DELGLPPSRKCLDFLLGACVNA 374
              IA+   P+      L++ F K              D+ G   ++ C   L+      
Sbjct: 421 NRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGV 480

Query: 375 RDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM-----PKDDPHV 429
             +K A ++W +    G+  + ++Y  + K     G+  +A KL  +M     PK  P V
Sbjct: 481 GRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDV 540


>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 111/245 (45%), Gaps = 4/245 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P++ +Y  LI+  C+   V  A  V  +M +  +     T N ++       +F    
Sbjct: 259 IVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAV 318

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           ++   +    L PN  T+  +I+    +   D+A  L + LK   L PT   YN ++AGY
Sbjct: 319 KLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGY 378

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLKSAGGQITK 183
            + +++ GAL ++KEME+  + P   T++ LI   +     E   + +  ++ +G     
Sbjct: 379 SKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDV 438

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           Y +  LI+     G  ++A ++     E+ ++  S + + ++      G +  A+ +  E
Sbjct: 439 YTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNE 498

Query: 243 IKEAG 247
           +  +G
Sbjct: 499 MVHSG 503



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 82/433 (18%), Positives = 170/433 (39%), Gaps = 55/433 (12%)

Query: 36  QMVQGELVPS---TETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92
           Q+ Q    P    T   ++I++A   S+  +        + H    P S TF +++ L +
Sbjct: 76  QLTQAHFTPCLTYTPLYDTIVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLMCLLI 135

Query: 93  KIKDFDSAYSLLDDLK----------------------------------EMNLMPTASM 118
           +   FD A+ + ++LK                                  E  L P   +
Sbjct: 136 RSNYFDKAWWIFNELKSKVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVI 195

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLK 175
           Y  ++ G  +  +V  A  +  +M++  + P+  T+S L++       + +  + YE +K
Sbjct: 196 YTTLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMK 255

Query: 176 SAGGQITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTS 234
            +G     Y +  LI+ Y   G  +KA +V  +  E  +       + L+  L    +  
Sbjct: 256 RSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFG 315

Query: 235 DAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDY--WMDGCCR 290
           +A+ +  ++ + G  L P  V    LI      G+++  ++L  ++        +     
Sbjct: 316 EAVKLVHKVNKVG--LSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNT 373

Query: 291 LILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQF 350
           LI    + + L+ A DL+K+++++             + F ++  T+          +  
Sbjct: 374 LIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKACE------MHS 427

Query: 351 IKDELGLPPSRKCLDFLL-GACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLAS 409
           + ++ GL P       L+ G CV+  ++K A  ++K      L  N + Y  M   +   
Sbjct: 428 LMEKSGLVPDVYTYSVLIHGLCVHG-NMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKE 486

Query: 410 GNRKSASKLLSKM 422
           G+   A +LL++M
Sbjct: 487 GSSYRALRLLNEM 499



 Score = 38.9 bits (89), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 31/148 (20%), Positives = 63/148 (42%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I PS  +Y  LI     L     A ++   M +  LVP   T + ++H            
Sbjct: 399 IAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEAS 458

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++  +   +L+PNS  + +MI    K      A  LL+++    ++P  + + + +   
Sbjct: 459 KLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTIGLL 518

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTF 154
            R +  + A ++L +M  + +KP    +
Sbjct: 519 CRDEKWKEAELLLGQMINSGLKPSVSLY 546


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/345 (20%), Positives = 139/345 (40%), Gaps = 40/345 (11%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACE------ESYE 61
           TP+ A+Y  L+   C + ++  A+D++ ++V     P   T  S++          E+Y+
Sbjct: 197 TPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYK 256

Query: 62  F-----------------NLVR------------RIYPMICHHNLKPNSETFRSMISLNV 92
                              L+R             +Y  +      P+  T  +MI    
Sbjct: 257 LFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLC 316

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
           K     +A  +   ++   L P   +Y+A++ G  + + +  AL +L +M++A   PD+ 
Sbjct: 317 KAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTI 376

Query: 153 TFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA 209
           T++ LI       D+     +++++  AG +   Y +  L++ +   G  + A  V  D 
Sbjct: 377 TYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDM 436

Query: 210 EIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGEL 268
                S + V    L+S L    + + A + ++ +KE GC  +     +L++ L   G+L
Sbjct: 437 SSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKL 496

Query: 269 NRLIQLLEEVHDPDYWMDGC-CRLILHCVRFKQLSSATDLLKQLK 312
                L +E+            RLI H  +  ++  A  L   ++
Sbjct: 497 EGGCMLFDEMERSGVANSQTRTRLIFHLCKANRVDEAVSLFNAIR 541



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 70/152 (46%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+   Y  LI   C   K+  AL+++ QM +    P T T N ++    +S +    R
Sbjct: 336 LAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAAR 395

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
             +  +     KP+  T+  ++S   K  + D+A  + DD+   +  P    Y  +++G 
Sbjct: 396 AFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGL 455

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            +++ +  A +  + M++    PDS  +S L+
Sbjct: 456 CKRRQLTKASLYFQHMKERGCPPDSFVYSSLV 487



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 84/454 (18%), Positives = 175/454 (38%), Gaps = 44/454 (9%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQG-ELVPSTETINSILHACEESYEFNLVRR 67
           P   ++  LIT  C   +   A  V+ +M +   + PS +T N +LH   +S +      
Sbjct: 92  PDVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMD 151

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
            +     +    +  T+ +++    K K    A +L++ +      PT + YNA++ G  
Sbjct: 152 HFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLC 211

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQITKY 184
           +   ++ A+ +L+++      PD  T++ LI     E+   +  K ++++   G  +   
Sbjct: 212 KMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTV 271

Query: 185 VFMALINAYTTCGEFEKARQV--VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
            + ALI      G+  +A  V   + ++  V     + S ++  L   GR   A+ +++ 
Sbjct: 272 CYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTL-STMIDGLCKAGRIGAAVRIFKS 330

Query: 243 IKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVH----DPD-----YWMDGCCRL 291
           ++  G  L P  V+  ALI  L    +++  +++L ++      PD       +DG C  
Sbjct: 331 MEARG--LAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLC-- 386

Query: 292 ILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFI 351
                +   + +A     ++ +     ++         FC+   TD             +
Sbjct: 387 -----KSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAA---------CGV 432

Query: 352 KDELG---LPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLA 408
            D++      P+      L+      R L +A L ++  +  G P +   Y  +      
Sbjct: 433 FDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCK 492

Query: 409 SGNRKSASKLLSKMPKDD-----PHVRFVIQACK 437
           SG  +    L  +M +          R +   CK
Sbjct: 493 SGKLEGGCMLFDEMERSGVANSQTRTRLIFHLCK 526



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 66/350 (18%), Positives = 143/350 (40%), Gaps = 19/350 (5%)

Query: 83  TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM 142
           T  +++ +  + K    A +LL +      +P    +N ++ GY   ++ + A  V++EM
Sbjct: 61  TGNALLDVFARTKRHREAGNLLKNELATTFLPDVETWNVLITGYCLAREPEEAFAVIREM 120

Query: 143 EQA-NVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGE 198
           E+   V P  +T + ++H       ++    ++E   + G  I  + + A+++      +
Sbjct: 121 EEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKK 180

Query: 199 FEKARQVVLDAEIPVKSRS---EVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255
            + A  V L  +I     +      +AL++ L   GR  +AI +  +I + GC  +    
Sbjct: 181 IQDA--VALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTY 238

Query: 256 IALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQLSSATDLLKQLKD 313
            +LI+ L  E       +L +E+      +D  C   LI   ++  ++  A+ + K +  
Sbjct: 239 TSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTS 298

Query: 314 KFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDEL-GLPPSRKCLDFLLGACV 372
           +    ++       +  C+         +IG  +  F   E  GL P+      L+    
Sbjct: 299 QGCVPDVVTLSTMIDGLCKAG-------RIGAAVRIFKSMEARGLAPNEVVYSALIHGLC 351

Query: 373 NARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
            AR +  A  +  + + A    + ++Y  +      SG+ ++A     +M
Sbjct: 352 KARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEM 401


>gi|15239874|ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g12100, mitochondrial; Flags: Precursor
 gi|9759377|dbj|BAB10028.1| unnamed protein product [Arabidopsis thaliana]
 gi|28973713|gb|AAO64173.1| unknown protein [Arabidopsis thaliana]
 gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis thaliana]
 gi|110737169|dbj|BAF00534.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004380|gb|AED91763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 816

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 92/431 (21%), Positives = 175/431 (40%), Gaps = 34/431 (7%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +  PS   Y K I  +  L  V   L++  +M    + PS    N ++    +    N  
Sbjct: 174 DFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDA 233

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            +++  +    L P+  T+ ++I    K  + + ++ + + +K  ++ P+   +N ++ G
Sbjct: 234 EQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKG 293

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQIT 182
            F+   V+ A  VLKEM+     PD+ TFS L     SNE  E  +  YE    +G ++ 
Sbjct: 294 LFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMN 353

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIP--VKSRSEVKSALVSALASHGRTSDAIIVY 240
            Y    L+NA    G+ EKA + +L  E+   +     + + ++      G    A +  
Sbjct: 354 AYTCSILLNALCKEGKIEKAEE-ILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKI 412

Query: 241 EEIKEAGC-------NLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL 293
           E +++ G        N   R    L E  N+E E+N++     ++      ++    LI 
Sbjct: 413 EAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKM-----KLKGVSPSVETYNILIG 467

Query: 294 HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLL--QFI 351
              R  +     D+LK+++D      +          C+           G  LL  Q +
Sbjct: 468 GYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCK-----------GSKLLEAQIV 516

Query: 352 KDEL---GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLA 408
           K ++   G+ P  +  + L+  C +   ++ A    KE    G+  N+++Y  +      
Sbjct: 517 KRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSM 576

Query: 409 SGNRKSASKLL 419
           +G    A  LL
Sbjct: 577 TGKLSEAEDLL 587



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/323 (21%), Positives = 141/323 (43%), Gaps = 28/323 (8%)

Query: 7   ITPSSASYKKLITYSC---DLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEF 62
           + P+   Y  +I   C   DL+   + ++ +E+  QG + P     N ++   CE     
Sbjct: 385 LVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEK--QG-MKPDHLAYNCLIRRFCELGEME 441

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           N  + +  M     + P+ ET+  +I    +  +FD  + +L ++++   MP    Y  +
Sbjct: 442 NAEKEVNKMKLK-GVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTL 500

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGG 179
           +    +   +  A +V ++ME   V P  + ++ LI  C ++   ED  ++ +++   G 
Sbjct: 501 INCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGI 560

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAII 238
           ++    +  LI+  +  G+  +A  ++L+ +   +K      ++L+S     G     I 
Sbjct: 561 ELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIA 620

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD-----PDYWM-DGCCRLI 292
           +YEE+K +G     +    LI     EG     I+L E +       PD  + +G    +
Sbjct: 621 LYEEMKRSGIKPTLKTYHLLISLCTKEG-----IELTERLFGEMSLKPDLLVYNG----V 671

Query: 293 LHCVRF-KQLSSATDLLKQLKDK 314
           LHC      +  A +L KQ+ +K
Sbjct: 672 LHCYAVHGDMEKAFNLQKQMIEK 694



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 93/442 (21%), Positives = 175/442 (39%), Gaps = 54/442 (12%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I PSS S   L+ +     +  V ++V   +++ +  PS       + A  +  +     
Sbjct: 140 IYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSDVGKGL 199

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  + H  + P+   +  +I    K K  + A  L D++    L+P+   YN ++ GY
Sbjct: 200 ELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGY 259

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
            +  + + +  V + M+  +++P   TF+ L+         ED     +++K  G     
Sbjct: 260 CKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDA 319

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           + F  L + Y++  + E A  V   A +  VK  +   S L++AL   G+   A    EE
Sbjct: 320 FTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKA----EE 375

Query: 243 I--KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQ 300
           I  +E    L P  VI            N +I             DG CR      +   
Sbjct: 376 ILGREMAKGLVPNEVI-----------YNTMI-------------DGYCR------KGDL 405

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS 360
           + +   +    K   K D +A        FC++   +  + ++    L+      G+ PS
Sbjct: 406 VGARMKIEAMEKQGMKPDHLAYNCLIRR-FCELGEMENAEKEVNKMKLK------GVSPS 458

Query: 361 RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420
            +  + L+G      +  +   I KE E+ G   NV+SY  +    L  G++   ++++ 
Sbjct: 459 VETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINC-LCKGSKLLEAQIVK 517

Query: 421 KMPKD---DPHVR---FVIQAC 436
           +  +D    P VR    +I  C
Sbjct: 518 RDMEDRGVSPKVRIYNMLIDGC 539



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 68/314 (21%), Positives = 123/314 (39%), Gaps = 41/314 (13%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  + P   +Y  LI   C+L ++  A   V +M    + PS ET N ++      YEF+
Sbjct: 417 KQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFD 476

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               I   +  +   PN  ++ ++I+   K      A  +  D+++  + P   +YN ++
Sbjct: 477 KCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLI 536

Query: 124 AGYFRKKDVQGALMVLKEM-----------------------------------EQANVK 148
            G   K  ++ A    KEM                                    +  +K
Sbjct: 537 DGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLK 596

Query: 149 PDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           PD  T++ LI       N +  I  YE++K +G + T   +  LI+  T  G     R  
Sbjct: 597 PDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTKEGIELTER-- 654

Query: 206 VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
            L  E+ +K    V + ++   A HG    A  + +++ E    L+     +LI      
Sbjct: 655 -LFGEMSLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKV 713

Query: 266 GELNRLIQLLEEVH 279
           G+L  +  L++E++
Sbjct: 714 GKLCEVRSLIDEMN 727



 Score = 38.1 bits (87), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 73/178 (41%), Gaps = 17/178 (9%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGE--LVPSTETINSILHACEESYEFNL 64
           I P+  +Y  LI+     L     +++ E++  GE  L P     N +LH      +   
Sbjct: 630 IKPTLKTYHLLIS-----LCTKEGIELTERLF-GEMSLKPDLLVYNGVLHCYAVHGDMEK 683

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
              +   +   ++  +  T+ S+I   +K+       SL+D++    + P A  YN I+ 
Sbjct: 684 AFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVK 743

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQIT 182
           G+   KD   A +  +EM++           +L+  C   E +    E+ +S   +I 
Sbjct: 744 GHCEVKDYMSAYVWYREMQEK---------GFLLDVCIGNELVSGLKEEWRSKEAEIV 792


>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 125/280 (44%), Gaps = 6/280 (2%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++ P+S +Y +LI   C    +  A+ ++ +M + +L P+  T N+++H   ++   +  
Sbjct: 395 KVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSA 454

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            R++ ++      P+  TF + I    K+   + A+ + + LKE +      +Y A++ G
Sbjct: 455 WRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDG 514

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQIT 182
           Y + +    A ++ K M      P+S TF+ L+     E   ED +   + +     + T
Sbjct: 515 YCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPT 574

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEV--KSALVSALASHGRTSDAIIVY 240
            + +  LI       +F++A  + LD  I    +  V   +A + A    GR  +A  + 
Sbjct: 575 VHTYTILIEEILRESDFDRA-NMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMV 633

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
            +IKE G  L+      L+      G+L+    +L  + D
Sbjct: 634 VKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFD 673



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 110/270 (40%), Gaps = 18/270 (6%)

Query: 5   LEITP------SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CE 57
            EI P      +  SY  LI   C++ K+  AL++  QM +    P   T   ++ A CE
Sbjct: 248 FEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCE 307

Query: 58  ESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTAS 117
              E   ++    M+  + ++PN  T+  +I    K+   D    +L  + E  L+ +  
Sbjct: 308 VGKETEALKFFEEMV-ENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVV 366

Query: 118 MYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED-------IIKY 170
            +NA++ GY ++  ++ A+ VL  M+   V P+S+T++ LI     ++        + K 
Sbjct: 367 PFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKM 426

Query: 171 YEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASH 230
           YE   S        +   L  A      +     ++ D  +P         A +  L   
Sbjct: 427 YENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVP---DQRTFCAFIDCLCKM 483

Query: 231 GRTSDAIIVYEEIKEAGCNLEPRAVIALIE 260
           G+   A  V+E +KE           ALI+
Sbjct: 484 GKVEQAHQVFESLKEKHAEANEFLYTALID 513



 Score = 41.6 bits (96), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 42/206 (20%), Positives = 85/206 (41%), Gaps = 4/206 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  S+  ++   C +  V VA      +++      + T  S++    + +E     
Sbjct: 186 VEPNLISFNTMVNAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAY 245

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++ ++       N  ++ ++I    ++   D A  L   +KE    P    Y  ++A +
Sbjct: 246 KVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAF 305

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA--GGQITKY 184
                   AL   +EM +  ++P+  T++ LI        + +  E L +    G ++  
Sbjct: 306 CEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSV 365

Query: 185 V-FMALINAYTTCGEFEKARQVVLDA 209
           V F ALI+ Y   G  E A   VLD+
Sbjct: 366 VPFNALIDGYCKRGMMEDA-ICVLDS 390



 Score = 39.3 bits (90), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 27/148 (18%), Positives = 67/148 (45%), Gaps = 3/148 (2%)

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           +F ++  ++  +      PN  T+  +I    K++    A+ L + +KE  + P+ +++N
Sbjct: 721 DFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHN 780

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSA 177
           ++++   +    + AL +L  M + N     +++  L+       N+E   + +  L S 
Sbjct: 781 SLLSSCCKLGMHEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLSC 840

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQV 205
           G    + V+  L++     G  ++  Q+
Sbjct: 841 GYNYDEVVWKVLLDGLVRKGYVDECSQL 868


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 126/283 (44%), Gaps = 6/283 (2%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQ--GELVPSTETINSILHACEESYE 61
           +L   P+  SY  L+   CD  +   AL++++ M    G+  P   +  ++++   +  +
Sbjct: 155 QLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGD 214

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
            +     Y  +    + PN  T+ S+I+   K +  D A  +L  + +  +MP    YN+
Sbjct: 215 LDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNS 274

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI-HNCSNEE--DIIKYYEQLKSAG 178
           I+ GY      + A+  LK+M    V+PD  T++ L+ + C N    +  K ++ +   G
Sbjct: 275 IVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRG 334

Query: 179 GQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAI 237
            +     +  L+  Y T G   +   ++ L     +     V S L+ A A  G+   A+
Sbjct: 335 LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAM 394

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           +V+ ++++ G N +      +I  L   G +   ++  E++ D
Sbjct: 395 LVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID 437



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 78/189 (41%), Gaps = 35/189 (18%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA----------- 55
           + P + +Y  +I   C   +V  A+   EQM+   L P     NS++H+           
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAK 464

Query: 56  -----------CEESYEFNLV-------------RRIYPMICHHNLKPNSETFRSMISLN 91
                      C ++  FN +              +++ ++    +KP+  T+ ++I   
Sbjct: 465 ELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 524

Query: 92  VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151
                 D A  LL  +  + + P    YN ++ GY +   ++ AL++ +EME + V PD 
Sbjct: 525 CLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDI 584

Query: 152 QTFSYLIHN 160
            T++ ++  
Sbjct: 585 ITYNIILQG 593



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 103/261 (39%), Gaps = 10/261 (3%)

Query: 1   MHAKLE------ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILH 54
           MH  L+      I P+   +  LI       KV  A+ V  +M Q  L P T T  +++ 
Sbjct: 358 MHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIG 417

Query: 55  ACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMP 114
              +S       R +  +    L P +  + S+I        +D A  L+ ++ +  +  
Sbjct: 418 ILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL 477

Query: 115 TASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYY 171
               +N+I+  + ++  V  +  +   M +  VKPD  T+S LI         ++  K  
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLL 537

Query: 172 EQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASH 230
             + S G +     +  LIN Y      E A  +  + E    S   +  + ++  L   
Sbjct: 538 ASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQT 597

Query: 231 GRTSDAIIVYEEIKEAGCNLE 251
            RT+ A  +Y  I E+G  LE
Sbjct: 598 RRTAAAKELYVGITESGTQLE 618


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 119/274 (43%), Gaps = 31/274 (11%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P++ +Y  +I   C +  +  A  + +QM++    P+  T N I+H   +    N   R+
Sbjct: 410 PNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRL 469

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
             M+  + LK ++ T+ ++IS   +    + A+SL +++ E  + P    YNAI+ GY  
Sbjct: 470 LEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLT 529

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMA 188
              V  AL +  +M ++   P S T++ +I   S    I     + ++  G++ K   + 
Sbjct: 530 VAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRI----SEAENFCGKMVKQGLLP 585

Query: 189 LINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC 248
            +  YT                           + +  L  +GRTS A  ++ E+K+   
Sbjct: 586 NVITYT---------------------------SFIDGLCKNGRTSLAFKIFHEMKKRDY 618

Query: 249 NLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPD 282
                   +LI+ L  EG+     +LL++  +P+
Sbjct: 619 FPNLCTYSSLIDGLCQEGQAEDAERLLDDGCEPN 652



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 125/289 (43%), Gaps = 14/289 (4%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  LI+      K  VA+ V  +M+   LVP+  T +++++       F     I
Sbjct: 340 PNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTI 399

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +  H+  PN+ET+  +I     I     A ++ D + +    P    YN I+  YF+
Sbjct: 400 FEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFK 459

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYV 185
           +  +  A+ +L+ M+   +K D+ T++ LI   S     E     + ++   G       
Sbjct: 460 QGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVT 519

Query: 186 FMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
           + A+IN Y T  + + A     ++V    +P    S   + ++S  +   R S+A     
Sbjct: 520 YNAIINGYLTVAKVDDALALFWKMVESGNVP---SSGTYNMMISGFSKTNRISEAENFCG 576

Query: 242 EIKEAGCNLEPRAV--IALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC 288
           ++ + G  L P  +   + I+ L   G  +   ++  E+   DY+ + C
Sbjct: 577 KMVKQG--LLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLC 623



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/245 (18%), Positives = 113/245 (46%), Gaps = 4/245 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P+  +Y   I   CD  +   A+ ++ +M +    P+ +T  +++       +F +  
Sbjct: 303 IEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAI 362

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +Y  +    L P + T+ ++I+       F++A ++ + +   + +P    YN I+ G+
Sbjct: 363 GVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGF 422

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITK 183
                +Q A  +  +M +A   P+  T++ +IH    +    + ++  E +K  G ++  
Sbjct: 423 CSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDT 482

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           + +  LI+ ++  G+ E A  +  +  E  +       +A+++   +  +  DA+ ++ +
Sbjct: 483 WTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWK 542

Query: 243 IKEAG 247
           + E+G
Sbjct: 543 MVESG 547



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 93/463 (20%), Positives = 177/463 (38%), Gaps = 25/463 (5%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P+  ++  +I   C+  KV  A  ++  +      P T T  S++    ++   +L  
Sbjct: 198 IRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLDLAF 257

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +      PNS T+ ++I+        + A  +L+++ +  + PT   Y   +   
Sbjct: 258 EMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSL 317

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITK 183
                   A+ +L +M++    P+ QT++ LI   S +   E  I  Y ++ + G   T 
Sbjct: 318 CDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTA 377

Query: 184 YVFMALINAYTTCGEFEKARQV----VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
             + ALIN     G FE A  +    +    +P    +E  + ++    S G    A  +
Sbjct: 378 VTYSALINQLYVEGRFETALTIFEWMLSHDSLP---NTETYNVIIKGFCSIGYIQKATAI 434

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC--CRLILHCVR 297
           ++++ +AG +        +I     +G +N  ++LLE +      +D      LI    R
Sbjct: 435 FDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSR 494

Query: 298 FKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIK-DELG 356
             +L  A  L  ++ +      +         +  +A  D         L  F K  E G
Sbjct: 495 GGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDA-------LALFWKMVESG 547

Query: 357 LPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSAS 416
             PS    + ++        +  A     +    GL  NV++Y         +G    A 
Sbjct: 548 NVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAF 607

Query: 417 KLLSKMPKDDPHVRFVIQACKQTYTIPSLQKERGFEKDRDTLL 459
           K+  +M K D    +    C  +  I  L +E G  +D + LL
Sbjct: 608 KIFHEMKKRD----YFPNLCTYSSLIDGLCQE-GQAEDAERLL 645



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 12/222 (5%)

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
            L R +Y  + +  ++PN  TF +MI +         A  ++  +      P    Y ++
Sbjct: 184 GLGRDVYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSL 243

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGG 179
           + G+ +  ++  A  +   M +    P+S T+S LI+   +E   E+ +   E++   G 
Sbjct: 244 IIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGI 303

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKS---RSEVKSALVSALASHGRTSDA 236
           + T + +   I   + C        V L  ++  +      +  +AL+S L+  G+   A
Sbjct: 304 EPTVHAYT--IPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVA 361

Query: 237 IIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLE 276
           I VY ++   G  L P AV   ALI  L  EG     + + E
Sbjct: 362 IGVYHKMLADG--LVPTAVTYSALINQLYVEGRFETALTIFE 401



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 67/333 (20%), Positives = 141/333 (42%), Gaps = 30/333 (9%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I+P+  +Y  +I     + KV  AL +  +MV+   VPS+ T N ++    ++   +   
Sbjct: 513 ISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAE 572

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
                +    L PN  T+ S I    K      A+ +  ++K+ +  P    Y++++ G 
Sbjct: 573 NFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGL 632

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN------CSNEEDIIKYYEQLKSAGGQ 180
            ++   + A  +L +      +P+  T++ L+        C   + ++   E +K  G Q
Sbjct: 633 CQEGQAEDAERLLDD----GCEPNVDTYTTLVRGLCGKGRCYEADQLV---ESMKKKGLQ 685

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSR---SEVKSALVSALASHGRTSDAI 237
            ++ ++ AL+       E E A + + D+ +    +   S+ K AL+ AL        A 
Sbjct: 686 PSEEIYRALLVGQCKNLEVESALK-IFDSMVTTGFQPCLSDYK-ALICALCKANFRQKAQ 743

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILH--- 294
            +++ + +   N +      L++ L  EGE +  ++LL  +   +  ++   R++L    
Sbjct: 744 CMFQTMLKKHWNSDEVVWTVLLDGLLKEGETDLSLELLHVMESRNCTLNFQTRVMLAREL 803

Query: 295 -----CVRFKQLSSATDLL----KQLKDKFKDD 318
                 +   Q+S    ++    KQ  D  +DD
Sbjct: 804 SALGCSIEIPQISKQLGIVKEKQKQTADVLRDD 836


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 109/236 (46%), Gaps = 13/236 (5%)

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +Y ++    L+P++ TF  +++   K K  DS + L ++++  N  P    Y+ ++    
Sbjct: 111 VYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVC 170

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKY 184
           +   V+ AL V  +M+    +P+  T++ +I        + K    +E++ S G   T+ 
Sbjct: 171 KCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRV 230

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEI 243
           V+ +LI+     G  + A ++  +          V  ++LV  L   GR S+A  +++E 
Sbjct: 231 VYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEA 290

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYW-----MDGCCR 290
           ++ GC L+      LI+ L     L+   ++  E+ +    PD +     MDG C+
Sbjct: 291 RDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCK 346



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/316 (21%), Positives = 126/316 (39%), Gaps = 45/316 (14%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           ++++Y  LI           AL V   M Q  L P T T N +++A +++   + V +++
Sbjct: 88  TASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLF 147

Query: 70  PMICHHNL-----------------------------------KPNSETFRSMISLNVKI 94
             + + N                                    +PN  T+ SMI    K 
Sbjct: 148 EEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKS 207

Query: 95  KDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTF 154
              D A+ L +++    L+ T  +YN+++ G  R      A  + +EM    ++PD  TF
Sbjct: 208 GHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTF 267

Query: 155 SYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAE- 210
           + L++         +  + +++ +  G  +   ++  LI+        ++A ++  + E 
Sbjct: 268 TSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEE 327

Query: 211 ---IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
              +P        +AL+  L   GR  DA I+  ++K AGC  +      LI+ L   G 
Sbjct: 328 DGLVP---DVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGR 384

Query: 268 LNRLIQLLEEVHDPDY 283
           +    QLL E+    Y
Sbjct: 385 VEEAGQLLLEMQSLGY 400



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 105/244 (43%), Gaps = 6/244 (2%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  +I        V  A  + E+M    LV +    NS++H    S   +   ++
Sbjct: 192 PNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKL 251

Query: 69  YPMICHHNLKPNSETFRSMI-SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +  +    L+P+  TF S++  L V  +    A  +  + +++      ++YN ++    
Sbjct: 252 FREMLSKGLQPDHVTFTSLVYGLGVAGRA-SEARRIFQEARDVGCALDVNLYNVLIDTLC 310

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE--DIIKYYEQLKSAGGQITKY 184
           + K +  A  +  E+E+  + PD  TF+ L+   C +    D       +K AG      
Sbjct: 311 KSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVT 370

Query: 185 VFMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
           V+  LI+     G  E+A Q++L+ + +  +      + L+      GR  DA+ ++EEI
Sbjct: 371 VYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEI 430

Query: 244 KEAG 247
              G
Sbjct: 431 SAKG 434


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 110/245 (44%), Gaps = 4/245 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  LI   C   KV  A+ + +QMV  +L P+  T N +++   ++   N   
Sbjct: 259 LRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAI 318

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +    + PN+ T+ ++I    K    + A++L + + +  + P  S YN ++AG 
Sbjct: 319 NLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGL 378

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEED--IIKYYEQLKSAGGQITK 183
            RK DV+ A  ++ EM    +  D  T++ LI + C   E    +K  +++   G   + 
Sbjct: 379 CRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSH 438

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEE 242
             +  L++ Y   G    A  V    E   K  + V  + L+      GR  DA  +  E
Sbjct: 439 VTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNE 498

Query: 243 IKEAG 247
           + E G
Sbjct: 499 MLERG 503



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 121/270 (44%), Gaps = 9/270 (3%)

Query: 7   ITPSSASYKKLITYSCDLL---KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           ++P+  +Y  LI   C +    K++ A  ++++MV   + P+  T N ++    +    +
Sbjct: 186 VSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVS 245

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              R++  +    L+PN  T+  +I+        D A +L D +   +L P    +N ++
Sbjct: 246 GAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLI 305

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQ 180
            G+ + K V  A+ +  +ME+  V P++ T++ LI   C +   ED    Y  +   G  
Sbjct: 306 NGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIF 365

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAII 238
                +  LI      G+ + AR  +++  +  K  ++V +   L+ +L   G +  A+ 
Sbjct: 366 PEVSTYNCLIAGLCRKGDVKAARS-LMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVK 424

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGEL 268
           + +E+ E G N        L++    EG L
Sbjct: 425 LLDEMFEKGLNPSHVTYNTLMDGYCREGNL 454



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/353 (21%), Positives = 139/353 (39%), Gaps = 46/353 (13%)

Query: 77  LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEM---NLMPTASMYNAIMAGYFRKKDVQ 133
           + PN  T+ ++I    K+      Y     LKEM    + P    YN ++ G+ + ++V 
Sbjct: 186 VSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVS 245

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYVFMALI 190
           GA+ V  EM++  ++P+  T++ LI+  CS+   ++ +   +Q+ S+  +        LI
Sbjct: 246 GAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLI 305

Query: 191 NAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
           N +       +A  +  D E   V   +   + L+ A    GR  DA  +Y  + + G  
Sbjct: 306 NGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIF 365

Query: 250 LEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLK 309
            E      LI  L  +G++     L+ E+       D    ++ + +    L    +  K
Sbjct: 366 PEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSAD----VVTYNILIDSLCKKGESRK 421

Query: 310 QLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLG 369
            +K               E+F                       E GL PS    + L+ 
Sbjct: 422 AVK------------LLDEMF-----------------------EKGLNPSHVTYNTLMD 446

Query: 370 ACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
                 +L+ A ++    E  G   NV+++  + K F   G  + A+ LL++M
Sbjct: 447 GYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEM 499



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 68/155 (43%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  + P++ +Y  LI   C   ++  A  +   M+   + P   T N ++       +  
Sbjct: 326 KQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVK 385

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             R +   +    L  +  T+  +I    K  +   A  LLD++ E  L P+   YN +M
Sbjct: 386 AARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLM 445

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            GY R+ +++ AL+V   ME+   + +  T + LI
Sbjct: 446 DGYCREGNLRAALIVRTRMERKGKQANVVTHNVLI 480


>gi|168054024|ref|XP_001779433.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669118|gb|EDQ55711.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 570

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 132/280 (47%), Gaps = 5/280 (1%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           A  ++ P + +Y  LI+ +        A+   ++M +   VP   T ++++    +  ++
Sbjct: 70  ANADVRPDNITYSTLISCANRCNYQDAAMAWFDRMHEAGCVPDVVTYSTMIDVYGKMGKY 129

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           +    +Y  +     KP+  T+ +M+ L  +     +A S+ +++K   + P A +YN +
Sbjct: 130 DEAIALYERVKQAGWKPDKVTYGTMVRLFGRAGYIRAAVSIFEEMKGSGVQPDAIVYNIM 189

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGG 179
           +A   R   +  AL V +EME+  VKP++ T S ++     C N  + ++ +++L+  G 
Sbjct: 190 IACLGRAGRMGHALKVFEEMEREGVKPNAVTLSTVMETYSRCGNVMEGLEVFQRLRQ-GV 248

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAII 238
                V+ A++      G   +A Q + +  E   +        ++S  A  G   +A  
Sbjct: 249 ACDVIVYNAVLKMCREAGLASEAEQYLREMTESGHQPNDWTYRNMISVYAKKGMAVEAHR 308

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            + ++ EAG  ++  A  +L++   +  E N++ ++L+E+
Sbjct: 309 TFSQMVEAGYQIDVMAYTSLLQAYGNAKEYNKVQEILDEM 348



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 84/185 (45%), Gaps = 6/185 (3%)

Query: 75  HNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQG 134
           H+   N  T+  M+ +  + + ++ +  + +D+   ++ P    Y+ +++   R      
Sbjct: 37  HSSSLNIYTYNVMLKVLRRGRQWEFSQQIAEDMANADVRPDNITYSTLISCANRCNYQDA 96

Query: 135 ALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITKYVFMALIN 191
           A+     M +A   PD  T+S +I         ++ I  YE++K AG +  K  +  ++ 
Sbjct: 97  AMAWFDRMHEAGCVPDVVTYSTMIDVYGKMGKYDEAIALYERVKQAGWKPDKVTYGTMVR 156

Query: 192 AYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNL 250
            +   G    A  +  + +   V+  + V + +++ L   GR   A+ V+EE++  G  +
Sbjct: 157 LFGRAGYIRAAVSIFEEMKGSGVQPDAIVYNIMIACLGRAGRMGHALKVFEEMEREG--V 214

Query: 251 EPRAV 255
           +P AV
Sbjct: 215 KPNAV 219



 Score = 39.7 bits (91), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 70/166 (42%), Gaps = 8/166 (4%)

Query: 7   ITPSSASYKKLI-TYS-CDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           + P++ +   ++ TYS C    V   L+V +++ QG +       N++L  C E+   + 
Sbjct: 214 VKPNAVTLSTVMETYSRCG--NVMEGLEVFQRLRQG-VACDVIVYNAVLKMCREAGLASE 270

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
             +    +     +PN  T+R+MIS+  K      A+     + E         Y +++ 
Sbjct: 271 AEQYLREMTESGHQPNDWTYRNMISVYAKKGMAVEAHRTFSQMVEAGYQIDVMAYTSLLQ 330

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQ---TFSYLIHNCSNEEDI 167
            Y   K+      +L EM   N  PD +       L+ +C  +E++
Sbjct: 331 AYGNAKEYNKVQEILDEMTSVNCAPDERLCCVILNLLDSCDTDEEL 376


>gi|224137250|ref|XP_002327079.1| predicted protein [Populus trichocarpa]
 gi|222835394|gb|EEE73829.1| predicted protein [Populus trichocarpa]
          Length = 795

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 99/461 (21%), Positives = 182/461 (39%), Gaps = 43/461 (9%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           KL++ P S SY  L+   C       A +V +QM++  + P+  T N++L       ++ 
Sbjct: 235 KLDLKPDSYSYCTLVDGYCRDGLSSKAFNVCDQMLRKGIEPTVVTYNTLLKGLCRFGDYK 294

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              R++ ++    + PN   + +++    K+ DF  A +L DD+    +  +   +N ++
Sbjct: 295 DALRLWHLMLQRGVTPNEVGYCTLLDGLFKMGDFSRALTLWDDILARGINKSIYAFNTMI 354

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQ 180
            G  +  ++ GA    K ME+   KPD  T+  L        N E+  K  E+++     
Sbjct: 355 NGLCKMGEMDGAKETFKRMEELGCKPDGITYRTLSDGYCKVGNVEEAFKIKEKMEKEEIF 414

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE---VKSALVSALASHGRTSDAI 237
            +  ++ +LI    T  +  K   + L AE+  +  S       AL++     GR   A 
Sbjct: 415 PSIEMYNSLIVGLFTSKKISKL--IDLLAEMDTRGLSPNVVTYGALIAGWCDQGRLDKAF 472

Query: 238 IVYEEIKEAGCNLEPRAVIA--LIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHC 295
             Y E+   G    P  +I   ++  L   G ++    LL+++ D D  +D  C      
Sbjct: 473 SAYFEMIGKG--FAPNVIICSKIVSSLYRLGRIDEANMLLQKMVDFDLVLDHRCLEDFQN 530

Query: 296 VRFKQLS--SATDLLKQLKDKFK-DDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQF-- 350
              ++L      D L +   KF   + +      + +       D     +GL    F  
Sbjct: 531 ADIRKLDCWKIADTLDESAIKFSLPNNVVYNIAMAGLCKSGKVNDARRFFLGLSHGSFTP 590

Query: 351 -----------------------IKDEL---GLPPSRKCLDFLLGACVNARDLKRAHLIW 384
                                  ++DE+   GL P+    + LL     +  L RA  ++
Sbjct: 591 DNFTYCTLIHGFSAAGYVNEAFNLRDEMVNKGLVPNITTYNALLNGLCKSGYLDRARRLF 650

Query: 385 KEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKD 425
            +    GL  NV++Y  +   +  SG+ + A  L  KM K+
Sbjct: 651 DKLHLKGLIPNVVTYNILIDGYCKSGSPREALDLRGKMLKE 691



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 80/163 (49%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
            TP + +Y  LI        V+ A ++ ++MV   LVP+  T N++L+   +S   +  R
Sbjct: 588 FTPDNFTYCTLIHGFSAAGYVNEAFNLRDEMVNKGLVPNITTYNALLNGLCKSGYLDRAR 647

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R++  +    L PN  T+  +I    K      A  L   + +  + P+   Y++++ G+
Sbjct: 648 RLFDKLHLKGLIPNVVTYNILIDGYCKSGSPREALDLRGKMLKEGISPSIITYSSLINGF 707

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK 169
            ++ DV+ A+ +L EM+ +NV     TFS L+  C    D+ K
Sbjct: 708 CKQSDVEEAMKLLNEMKASNVDQTIATFSKLVEGCIQHGDVKK 750



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 98/223 (43%), Gaps = 21/223 (9%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR--------IYPMICHHNLK 78
           V  AL V + M +    PS  + NS+L         NLV+R        +Y  +   ++ 
Sbjct: 12  VKNALHVFDNMGKYGRKPSLRSCNSLLS--------NLVKRGESYSAVLVYDQMRRLDIV 63

Query: 79  PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMV 138
           P+  T   M++   K    + A   + +++++     A  YN+++ GY    D++GA  V
Sbjct: 64  PDVFTCAIMVNAYCKAGKVERAVEFVREMEKLGFELNAVSYNSLVDGYVSLGDIEGAKGV 123

Query: 139 LKEMEQANVKPDSQTFSYLIHN----CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYT 194
           LK M +  V  +  T + LI      C  EE      E  K  G  + +Y + ALI+ Y 
Sbjct: 124 LKFMSEKGVMRNKVTLTLLIKGYCKQCKVEEAEKVLREMEKEDGVVVDEYAYGALIDGYC 183

Query: 195 TCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDA 236
             G+   A +V  +  ++ +K    V ++L++    +G+  + 
Sbjct: 184 KVGKMGDAIRVRDEMLKVGLKMNLFVCNSLINGYCKNGQVHEG 226



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/200 (21%), Positives = 83/200 (41%), Gaps = 3/200 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P++  Y   +   C   KV+ A      +  G   P   T  +++H    +   N    +
Sbjct: 555 PNNVVYNIAMAGLCKSGKVNDARRFFLGLSHGSFTPDNFTYCTLIHGFSAAGYVNEAFNL 614

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              + +  L PN  T+ ++++   K    D A  L D L    L+P    YN ++ GY +
Sbjct: 615 RDEMVNKGLVPNITTYNALLNGLCKSGYLDRARRLFDKLHLKGLIPNVVTYNILIDGYCK 674

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYV 185
               + AL +  +M +  + P   T+S LI+    + D+   +K   ++K++    T   
Sbjct: 675 SGSPREALDLRGKMLKEGISPSIITYSSLINGFCKQSDVEEAMKLLNEMKASNVDQTIAT 734

Query: 186 FMALINAYTTCGEFEKARQV 205
           F  L+      G+ +K  ++
Sbjct: 735 FSKLVEGCIQHGDVKKMSKL 754


>gi|168047776|ref|XP_001776345.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672305|gb|EDQ58844.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 503

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 139/325 (42%), Gaps = 20/325 (6%)

Query: 3   AKLEITPSSASYKKLITYSC---DLLKVHVALDVVEQMVQGELVPSTETINSILHACEES 59
           A  E+ P S ++  L+  +      LK   AL   + MVQ  + PS     + + A  ++
Sbjct: 130 AFYEVFPDSVTFSVLMNSAVKGGGSLKEVWAL--YQDMVQRGISPSVSVFGTFIKAFCDA 187

Query: 60  YEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMY 119
                   I   +   N+  N   +  +I    ++   + A  L+ +++E  + P    Y
Sbjct: 188 GRLKEALLITTEMEKLNVPFNVVIYNILIDAYGRVGQLEEAEGLMTEMRERGIQPNVGTY 247

Query: 120 NAIMAGYFR---KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQ 173
           NA++ GY     K+    A  +++EME + + PD  TF+ L+    +E   E   + + +
Sbjct: 248 NALITGYLEAKPKRQFVVAEGLIEEMEASGLYPDVVTFTMLLGAYGHEGLTEQAEQVFNR 307

Query: 174 LKSAGGQITKYVFMALINAYT--TCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHG 231
           +K+ G Q   Y + ALINAY    C E + AR   +  +  V    E  +AL+ A    G
Sbjct: 308 MKARGVQPNSYSYTALINAYAERRCPE-KAARAFEMIRKQGVNPTVETYTALLDAYRRAG 366

Query: 232 RTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV----HDPDYWMDG 287
                  V++ +K  GC       + +++    +G       L+EE     H PD  +  
Sbjct: 367 DLEMVQAVWKSMKVEGCVATRVTYMTILDAFQKQGRYKEARDLIEEFKNQGHKPDLMVYN 426

Query: 288 CCRLILHCVRFKQLSSATDLLKQLK 312
              L+   +R  +   A+D+L ++K
Sbjct: 427 M--LLNSYMRGGRHVKASDILLEMK 449



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/175 (21%), Positives = 76/175 (43%), Gaps = 3/175 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+S SY  LI    +      A    E + +  + P+ ET  ++L A   + +  +V+
Sbjct: 313 VQPNSYSYTALINAYAERRCPEKAARAFEMIRKQGVNPTVETYTALLDAYRRAGDLEMVQ 372

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +          T+ +++    K   +  A  L+++ K     P   +YN ++  Y
Sbjct: 373 AVWKSMKVEGCVATRVTYMTILDAFQKQGRYKEARDLIEEFKNQGHKPDLMVYNMLLNSY 432

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAG 178
            R      A  +L EM+ A   PDS T+  LI+      ++   +KY+ ++ + G
Sbjct: 433 MRGGRHVKASDILLEMKTAGFLPDSFTYCTLIYGFLRVRDQTKALKYHREMMNRG 487


>gi|226494779|ref|NP_001147294.1| transferase, transferring glycosyl groups [Zea mays]
 gi|195609598|gb|ACG26629.1| transferase, transferring glycosyl groups [Zea mays]
 gi|414866930|tpg|DAA45487.1| TPA: hypothetical protein ZEAMMB73_715808 [Zea mays]
          Length = 546

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 127/299 (42%), Gaps = 18/299 (6%)

Query: 79  PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMV 138
           P ++    +I       +F      L  +      P   +Y  ++ G FR++    AL V
Sbjct: 207 PPADAVADLIGAFAAEGNFGKVSDTLHLMIATGCTPDKVIYQRVIHGLFRRRMGGEALRV 266

Query: 139 LKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINAYTT 195
            +E++Q     D  T++ +IH       I    + ++++   G    +Y + +L+  Y  
Sbjct: 267 FREIKQRGYDIDGVTYTTVIHGLCEMRLIGVAQQMWDEMVGRGIAPNEYAYCSLVTYYCR 326

Query: 196 CGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRA 254
            G+ +KAR+V  +  E   K  +   + L+     HGR  DA+ V+EE+   G   +   
Sbjct: 327 VGDLDKARKVYDEMLEKGFKQTTVSCNILIKGFCVHGRVYDALEVFEEMSIKGIKHDVIT 386

Query: 255 VIALIEHLNSEGELNRLIQ----LLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQ 310
              LI  L   G+L+  ++    LL    +P     G  RLI       Q+ +A DL+K 
Sbjct: 387 YDTLINGLFKAGKLDLAMRMYEWLLSSGLEPTSSTFG--RLICAMCENGQVHAAVDLIKS 444

Query: 311 LKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQ-FIKDELGLPPSRKCLDFLL 368
           ++ K  +  +    H    FC+I  +D      G+  L   +KD +   P R+  D+L+
Sbjct: 445 MRTKGLEPPVWTNDHIISGFCKINLSDE-----GMAWLAGMLKDNIR--PQRQTFDYLV 496



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 83/185 (44%), Gaps = 11/185 (5%)

Query: 16  KLITYSCDLL--------KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           K  T SC++L        +V+ AL+V E+M    +     T +++++   ++ + +L  R
Sbjct: 346 KQTTVSCNILIKGFCVHGRVYDALEVFEEMSIKGIKHDVITYDTLINGLFKAGKLDLAMR 405

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +Y  +    L+P S TF  +I    +     +A  L+  ++   L P     + I++G+ 
Sbjct: 406 MYEWLLSSGLEPTSSTFGRLICAMCENGQVHAAVDLIKSMRTKGLEPPVWTNDHIISGFC 465

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKY 184
           +       +  L  M + N++P  QTF YL+ + S     +D++     +   G +I  +
Sbjct: 466 KINLSDEGMAWLAGMLKDNIRPQRQTFDYLVESLSTSGRLDDVLLVLNIMFKVGFEIGTF 525

Query: 185 VFMAL 189
               L
Sbjct: 526 ACTVL 530



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 104/237 (43%), Gaps = 14/237 (5%)

Query: 48  TINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL 107
           T  +++H   E     + ++++  +    + PN   + S+++   ++ D D A  + D++
Sbjct: 281 TYTTVIHGLCEMRLIGVAQQMWDEMVGRGIAPNEYAYCSLVTYYCRVGDLDKARKVYDEM 340

Query: 108 KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC--SNEE 165
            E     T    N ++ G+     V  AL V +EM    +K D  T+  LI+    + + 
Sbjct: 341 LEKGFKQTTVSCNILIKGFCVHGRVYDALEVFEEMSIKGIKHDVITYDTLINGLFKAGKL 400

Query: 166 DI-IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA-----EIPVKSRSEV 219
           D+ ++ YE L S+G + T   F  LI A    G+   A  ++        E PV +   +
Sbjct: 401 DLAMRMYEWLLSSGLEPTSSTFGRLICAMCENGQVHAAVDLIKSMRTKGLEPPVWTNDHI 460

Query: 220 KSALVSA-LASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLL 275
            S      L+  G    A ++ + I+      + +    L+E L++ G L+ ++ +L
Sbjct: 461 ISGFCKINLSDEGMAWLAGMLKDNIRP-----QRQTFDYLVESLSTSGRLDDVLLVL 512


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 122/262 (46%), Gaps = 12/262 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           +L    +MV   + PS  T  S++ +C +       R ++  +  H    +     ++++
Sbjct: 95  SLYFYSRMVLSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGLDVYVQAALVA 154

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           L  K  D  +A  + D ++E +++     +N++++GY +    + A+ +   M++  V+P
Sbjct: 155 LYGKCGDLINARKVFDKIRERSIVA----WNSMISGYEQNGFAKEAIGLFDRMKETGVEP 210

Query: 150 DSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           DS TF  ++  C++          +E +   G  +   +  +LIN Y  CG   KAR+ V
Sbjct: 211 DSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKARE-V 269

Query: 207 LDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
            D+   +K R+ V  +A++S   ++G  S A+ ++ E++  G        +A++      
Sbjct: 270 FDS---MKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSACAHA 326

Query: 266 GELNRLIQLLEEVHDPDYWMDG 287
           G +N   +L   + +  + + G
Sbjct: 327 GLVNEGRRLFASIREEYHLVPG 348


>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 109/230 (47%), Gaps = 8/230 (3%)

Query: 48  TINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL 107
           T N+++ A  +  +  L   I   +   N+ PN  T+ +MI    K+  F+ A SL  D+
Sbjct: 343 TFNTLIDAVCKGGQMELAASIMTTMRGKNISPNVVTYSTMIDGYGKLGCFEEAISLYHDM 402

Query: 108 KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE--- 164
           KE  + P    YN ++  Y +      AL+  K+ME+  +K D  T++ LI     +   
Sbjct: 403 KESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYNALIDAYGKQGKY 462

Query: 165 EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSAL 223
           +D    ++++K  G       + ALI++Y+  G  +    V  +     +K    + S+L
Sbjct: 463 KDAACLFDKMKGEGLVPNVLTYSALIDSYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSSL 522

Query: 224 VSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRL 271
           + +    G   DA+++ +E+ +AG  ++P  V   +LI+     G+ ++L
Sbjct: 523 IDSCCKCGLVEDAVVLLQEMTQAG--IQPNIVTYNSLIDAYGRYGQADKL 570



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 130/278 (46%), Gaps = 21/278 (7%)

Query: 17  LITY-----SCDLLKVHV--ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           LITY     +C    V +  ALD+ ++M +  + P   T NS++  C     +   +R++
Sbjct: 270 LITYNTIIDACGKGGVDLKQALDIFDEMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVF 329

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
             +    ++ +  TF ++I    K    + A S++  ++  N+ P    Y+ ++ GY + 
Sbjct: 330 AEMQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGKNISPNVVTYSTMIDGYGKL 389

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVF 186
              + A+ +  +M+++ V+PD  +++ LI         +D +   + ++  G +     +
Sbjct: 390 GCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTY 449

Query: 187 MALINAYTTCGEFEKAR----QVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
            ALI+AY   G+++ A     ++  +  +P        SAL+ + +  G   D   V+ E
Sbjct: 450 NALIDAYGKQGKYKDAACLFDKMKGEGLVP---NVLTYSALIDSYSKAGMHQDVSNVFTE 506

Query: 243 IKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEV 278
            K AG  L+P  V+  +LI+     G +   + LL+E+
Sbjct: 507 FKRAG--LKPDVVLYSSLIDSCCKCGLVEDAVVLLQEM 542



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 131/317 (41%), Gaps = 14/317 (4%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I+P+  +Y  +I     L     A+ +   M +  + P   + N+++    +   F+   
Sbjct: 372 ISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDAL 431

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
                +    LK +  T+ ++I    K   +  A  L D +K   L+P    Y+A++  Y
Sbjct: 432 IACKDMERVGLKADVVTYNALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALIDSY 491

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLKSAGGQITK 183
            +    Q    V  E ++A +KPD   +S LI +C      ED +   +++  AG Q   
Sbjct: 492 SKAGMHQDVSNVFTEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNI 551

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSA-------LASHGRTSDA 236
             + +LI+AY   G+ +K   V  +    V+   E    +V          + H     A
Sbjct: 552 VTYNSLIDAYGRYGQADKLEAVKANMPNSVQKIGERSMEVVRKPPPSQQNASDHTGVLAA 611

Query: 237 IIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILH 294
           + V+ E+++ G  L+P  V   A++   +    L     LLE++   D W+ G    +L 
Sbjct: 612 VSVFHEMQQFG--LKPNVVTFSAILNACSRCASLQEASVLLEQMRFFDGWVYGIAHGLLM 669

Query: 295 CVRFKQLSSATDLLKQL 311
            +R +    A  L  ++
Sbjct: 670 GLREQVWVEAQRLFDEI 686



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/259 (19%), Positives = 113/259 (43%), Gaps = 5/259 (1%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHAC-EESYEFNLVRRIYPM 71
           +Y  +++      +   AL V + M +    P+  T N+I+ AC +   +      I+  
Sbjct: 237 AYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKQALDIFDE 296

Query: 72  ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131
           +    ++P+  TF S+I++  +   ++ +  +  +++   +      +N ++    +   
Sbjct: 297 MQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCKGGQ 356

Query: 132 VQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMA 188
           ++ A  ++  M   N+ P+  T+S +I         E+ I  Y  +K +G +  +  +  
Sbjct: 357 MELAASIMTTMRGKNISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNT 416

Query: 189 LINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           LI+ Y   G F+ A     D E + +K+     +AL+ A    G+  DA  +++++K  G
Sbjct: 417 LIDIYAKLGRFDDALIACKDMERVGLKADVVTYNALIDAYGKQGKYKDAACLFDKMKGEG 476

Query: 248 CNLEPRAVIALIEHLNSEG 266
                    ALI+  +  G
Sbjct: 477 LVPNVLTYSALIDSYSKAG 495



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 94/202 (46%), Gaps = 5/202 (2%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           ++  LI   C   ++ +A  ++  M    + P+  T ++++    +   F     +Y  +
Sbjct: 343 TFNTLIDAVCKGGQMELAASIMTTMRGKNISPNVVTYSTMIDGYGKLGCFEEAISLYHDM 402

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               ++P+  ++ ++I +  K+  FD A     D++ + L      YNA++  Y ++   
Sbjct: 403 KESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYNALIDAYGKQGKY 462

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLKSAGGQITKYVFMAL 189
           + A  +  +M+   + P+  T+S LI + S     +D+   + + K AG +    ++ +L
Sbjct: 463 KDAACLFDKMKGEGLVPNVLTYSALIDSYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSSL 522

Query: 190 INAYTTCGEFEKARQVVLDAEI 211
           I++   CG  E A  VVL  E+
Sbjct: 523 IDSCCKCGLVEDA--VVLLQEM 542



 Score = 40.0 bits (92), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 39/201 (19%), Positives = 90/201 (44%), Gaps = 12/201 (5%)

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           MIS   ++   + A  + +  ++         Y+A+++ Y R    + AL V + M++A 
Sbjct: 206 MISTLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAG 265

Query: 147 VKPDSQTFSYLIHNCSNE----EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
            KP+  T++ +I  C       +  +  +++++  G +  +  F +LI   +  G +E +
Sbjct: 266 CKPNLITYNTIIDACGKGGVDLKQALDIFDEMQKEGVEPDRITFNSLIAVCSRGGLWEDS 325

Query: 203 RQVVLDAEIPVKSRSE---VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALI 259
           ++V   AE+  +   +     + L+ A+   G+   A  +   ++  G N+ P  V+   
Sbjct: 326 QRVF--AEMQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMR--GKNISPN-VVTYS 380

Query: 260 EHLNSEGELNRLIQLLEEVHD 280
             ++  G+L    + +   HD
Sbjct: 381 TMIDGYGKLGCFEEAISLYHD 401


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/261 (20%), Positives = 115/261 (44%), Gaps = 4/261 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P+  +Y   I+  CD+ +V  A+++V  M +    PS +T  +I+     + +  L  
Sbjct: 298 IEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAI 357

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +Y  +    L PN+ T+ ++I+       F  A  + D ++    +  A  YN I+ G 
Sbjct: 358 GMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGL 417

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI-HNCSNE--EDIIKYYEQLKSAGGQITK 183
           F   D++ A++V  +M +    P   T++ LI  N       +  ++   +K +  +  +
Sbjct: 418 FGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDE 477

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             +  LI+ +   G+ + A     +  +  +       +A++      G+   A+ ++E 
Sbjct: 478 RTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFER 537

Query: 243 IKEAGCNLEPRAVIALIEHLN 263
           ++E GC+       A+I  L+
Sbjct: 538 MEENGCSASIETYNAIISGLS 558



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 109/236 (46%), Gaps = 18/236 (7%)

Query: 61  EFNLV---RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTAS 117
           +F++V   + +Y  I    +KP+  TF +MI++  K      A  + + + + +L P A 
Sbjct: 174 KFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAF 233

Query: 118 MYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQL 174
            Y +++ G+ R + +  A  V   M +    P+S T+S LI+   NE  I   +   E++
Sbjct: 234 TYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEM 293

Query: 175 KSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRS-EVKSALVSALASHGRT 233
              G + T Y +   I++    G  + A  +V        S S +  +A++S L   G+ 
Sbjct: 294 TEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKM 353

Query: 234 SDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDG 287
             AI +Y ++ + G  L P  V   ALI  L +EG     +++ +       WM+G
Sbjct: 354 ELAIGMYHKMLKEG--LVPNTVTYNALINELCTEGRFGIALKIFD-------WMEG 400



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/276 (20%), Positives = 125/276 (45%), Gaps = 8/276 (2%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  I+P+  +Y  +I   C   K+ VAL + E+M +     S ET N+I+    +   F+
Sbjct: 505 KCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFS 564

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              +    +    L+PN+ T+ S+I+   K    + A+ +  ++++ N +P A  Y +++
Sbjct: 565 EAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLI 624

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQ 180
            G  ++  V  A    + + +   +P   T+S L+     E    +  +  E +K  G  
Sbjct: 625 YGLCQEGKVDAA----ERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLS 680

Query: 181 ITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
            +  ++ +L+ A+    + + A ++  L A    +    +   L+ AL    R  +A+ +
Sbjct: 681 PSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEALNI 740

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLL 275
           ++ + +   N +      L++ L  EG+ +  ++ L
Sbjct: 741 FQSLLKKQWNSDLIVWTVLVDGLLQEGDSDLCMKFL 776



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/302 (22%), Positives = 126/302 (41%), Gaps = 21/302 (6%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINS-ILHACEESYEFNLVRRI 68
           ++ +Y ++I     +  +  A+ V  +M++    P+  T N+ I+   +  Y  N  R +
Sbjct: 406 NAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFL 465

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           Y M+   N +P+  T+  +IS   K    DSA S   ++ +  + P    Y A++ GY +
Sbjct: 466 Y-MMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCK 524

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQITKYV 185
           +  +  AL + + ME+       +T++ +I   S      +  K+  ++   G Q     
Sbjct: 525 EGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTIT 584

Query: 186 FMALINAYTTCGEFEKARQVVLDAE----IPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
           + +LIN          A ++  + E    +P    +   ++L+  L   G+   A    E
Sbjct: 585 YTSLINGLCKNTATNLAFKIFHEMEKKNCLP---NAHTYTSLIYGLCQEGKVDAA----E 637

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYWMDGCCRLILHCVR 297
            + E GC         L+  L  EG  N   QL+E + +    P   +  C  L+ HC  
Sbjct: 638 RLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIY-CSLLVAHCKS 696

Query: 298 FK 299
            K
Sbjct: 697 LK 698



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/240 (21%), Positives = 99/240 (41%), Gaps = 37/240 (15%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVRR 67
           P   +Y +LI+  C   K+  A     +M++  + P+  T  +++   C+E  + ++   
Sbjct: 475 PDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEG-KIDVALS 533

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           ++  +  +    + ET+ ++IS   K   F  A      + E  L P    Y +++ G  
Sbjct: 534 LFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLC 593

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFM 187
           +      A  +  EME+ N  P++ T++ LI+    +E  +   E+L   G + T     
Sbjct: 594 KNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLC-QEGKVDAAERLTENGCEPT----- 647

Query: 188 ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
             I+ Y+T                           LVS L   GR+++A  + E +KE G
Sbjct: 648 --IDTYST---------------------------LVSGLCREGRSNEASQLVENMKEKG 678


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 90/396 (22%), Positives = 162/396 (40%), Gaps = 29/396 (7%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P++  Y  LI+  C    V +A ++ ++M +  ++P     NS++    +        
Sbjct: 463 LKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEEST 522

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           + +  +    L PN  T+  +I   +K  D +SA  L+  + +  L P   +Y  ++  Y
Sbjct: 523 KYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESY 582

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS---NEEDIIKYYEQLKSAGGQITK 183
           F+  D++      K M    V  D++ +  LIHN S   N E   +    ++  G     
Sbjct: 583 FKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDV 642

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           +V+ +LI+      + EKA  ++ + ++  V       +AL+  L   G  S A  V+  
Sbjct: 643 HVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNS 702

Query: 243 IKEAGCNLEPRAV--IALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQ 300
           I   G  L P  V   +LI+     G+++    L  E+       D      ++ V    
Sbjct: 703 ILAKG--LVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDA----FVYSVLTTG 756

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFS--------EIFCQIATTDPPDVQIGLDLLQFIK 352
            SSA DL + +   F  +EM +  H S        + FC+        +Q  L LL  I 
Sbjct: 757 CSSAGDLEQAM---FLIEEMFLRGHASISSFNNLVDGFCKRG-----KMQETLKLLHVIM 808

Query: 353 DELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYE 388
              GL P+   ++ ++     A  L   H I+ E +
Sbjct: 809 GR-GLVPNALTIENIISGLSEAGKLSEVHTIFVELQ 843



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 91/449 (20%), Positives = 181/449 (40%), Gaps = 30/449 (6%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPST----ETINSILHACEESYEF 62
           + P   +Y  LI   C   + + A  ++++M   EL P+       I+  +        F
Sbjct: 288 LVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAF 347

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
            +++ +        ++PN  T+ +++    K+   D A  LL  +   +  P    YN I
Sbjct: 348 KMIKEMVAA----GVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLI 403

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGG 179
           + G+FR    + A  +L EME A + P+  T+S +IH        E      E++ + G 
Sbjct: 404 IEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGL 463

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEV--KSALVSALASHGRTSDAI 237
           +   +V+  LI+ Y   G    A + + D    V    ++   ++L+  L+  GR  ++ 
Sbjct: 464 KPNAFVYAPLISGYCREGNVSLACE-IFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEEST 522

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVR 297
             + +++E G          LI      G+L    QL++ + D     +    + L    
Sbjct: 523 KYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESY 582

Query: 298 FKQLSSATDLLKQLKDKFK---DDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDE 354
           FK     +D ++++   FK   D  + ++     I     ++   +++    +L  I+  
Sbjct: 583 FK-----SDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSS-GNMEAAFRVLSGIEKN 636

Query: 355 LGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGN--- 411
             +P        + G C  A D ++A  I  E    G+  N++ Y  +      SG+   
Sbjct: 637 GSVPDVHVYSSLISGLCKTA-DREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISY 695

Query: 412 -RKSASKLLSK--MPKDDPHVRFVIQACK 437
            R   + +L+K  +P    +   +  +CK
Sbjct: 696 ARNVFNSILAKGLVPNCVTYTSLIDGSCK 724



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/240 (20%), Positives = 111/240 (46%), Gaps = 4/240 (1%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           ++ +Y  LI   C    V  A    + M    LVP   T  ++++   +S   N  + + 
Sbjct: 256 NTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALL 315

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
             +    LKPN   + ++I   ++  + D A+ ++ ++    + P    Y+ ++ G  + 
Sbjct: 316 DEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKM 375

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVF 186
             +  A ++LK+M + + +PD+ T++ +I       +++D  +   ++++AG     Y +
Sbjct: 376 GQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTY 435

Query: 187 MALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
             +I+     GE EKA  ++ +     +K  + V + L+S     G  S A  +++++ +
Sbjct: 436 SIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTK 495



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 109/253 (43%), Gaps = 12/253 (4%)

Query: 33  VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92
           V+++ V+G          S L A  +  EF+  +++   +       N+ T+  +I+   
Sbjct: 211 VLQRAVEGSAARGRH--GSALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLC 268

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
           +    + A+    D+++  L+P    Y A++ G  + +    A  +L EM  A +KP+  
Sbjct: 269 RSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVV 328

Query: 153 TFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA----RQV 205
            ++ LI       N ++  K  +++ +AG Q  K  +  L+      G+ ++A    +Q+
Sbjct: 329 VYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQM 388

Query: 206 VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
           V D+  P    +   + ++     H    DA  +  E++ AG +        +I  L   
Sbjct: 389 VRDSHRP---DTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQS 445

Query: 266 GELNRLIQLLEEV 278
           GE  +   LLEE+
Sbjct: 446 GEPEKASDLLEEM 458


>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
          Length = 563

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 111/223 (49%), Gaps = 13/223 (5%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS 86
           +H+  D+V +   G   P+T T+  +L AC         ++I+  I       +     S
Sbjct: 76  IHLFKDMVGK---GYPNPNTFTMAFVLKACSIIMALEEGKQIHAQILRSGFSSSPYVQSS 132

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           +++   K ++   A  + D++ E NL+     ++A+++GY R   +  AL++ +EM+   
Sbjct: 133 LVNFYSKCEEITIARKVFDEITERNLV----CWSAMVSGYARLGMINEALIMFREMQVVG 188

Query: 147 VKPDSQTFSYLIHNCS--NEEDIIKY-YEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203
           ++PD  +   ++  C+     DI K+ +  +K     +   +  ALIN Y  CG  EKAR
Sbjct: 189 IEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINMYAKCGCIEKAR 248

Query: 204 QVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA 246
           ++    E+ VK  S+  S+++  LA HG   DA+ V+  ++EA
Sbjct: 249 EIF--DEMRVKD-SKAWSSMIVGLAIHGLAEDALNVFSRMEEA 288


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 89/443 (20%), Positives = 182/443 (41%), Gaps = 22/443 (4%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P    +  +I   C   +   A+ +  +M +  + P+  T N+I+H   +S   +   
Sbjct: 252 IIPDVHLFSTMINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAY 311

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R    +    + P+  T+   I+  +K++  D A  +L ++ E+  +P   +YN ++ GY
Sbjct: 312 RFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGY 371

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITK 183
            +  ++  AL +  +M    + P+S T + LI      + I +     E++   G  I +
Sbjct: 372 CKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQ 431

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             F  +IN       F  A   + +  +  ++    + + LVS L   G+  +A+ ++  
Sbjct: 432 GSFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCR 491

Query: 243 IKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRF 298
           +   G    P  V   ALI  L   G +   ++LL ++ +     D      LI  C + 
Sbjct: 492 LLGKG--FVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKE 549

Query: 299 KQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLP 358
            ++    +L +++  K    ++   Y F+ +   +   D  D       L     + G  
Sbjct: 550 GKVKEGFELKEEMVKKGIQPDI---YTFNLLLHGLCNADKIDEA---SRLWHECKKNGYV 603

Query: 359 PSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKL 418
           P+      ++     A  ++    +  E  +  L  N + Y  + +A+  +GN  +A +L
Sbjct: 604 PNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRL 663

Query: 419 LSKMPKDDPHVRFVIQACKQTYT 441
                +DD   R V+ +C  TY+
Sbjct: 664 -----RDDMKSRGVLLSC-ATYS 680



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 72/152 (47%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           S A+Y  L+   C++  V  A  ++++M +  L+P+     +I+    +  + N V  + 
Sbjct: 675 SCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVL 734

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
             +  HN+ PN  T+  MI    K+     A  LL+++ E  ++P A  YNA   G  ++
Sbjct: 735 QEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKE 794

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNC 161
             V+ A  V  EM    V  D  T++ LI  C
Sbjct: 795 GKVEEAFKVCDEMSSGAVCLDEITYTTLIDGC 826



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 58/280 (20%), Positives = 117/280 (41%), Gaps = 8/280 (2%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  LI+  C   KV    ++ E+MV+  + P   T N +LH    + + +   R++   
Sbjct: 538 TYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHEC 597

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
             +   PN  T+  MI    K    +   +LL++L    L   + +YN+++  Y    ++
Sbjct: 598 KKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNM 657

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLKSAGGQITKYVFMAL 189
             A  +  +M+   V     T+S L+H   N    +D     ++++  G       +  +
Sbjct: 658 NAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTI 717

Query: 190 INAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC 248
           I  Y+  G+  K   V+ + +   +       + ++      G+T +A  +  E+ E G 
Sbjct: 718 IGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKG- 776

Query: 249 NLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
            + P AV   A    L  EG++    ++ +E+      +D
Sbjct: 777 -ILPDAVTYNAFTNGLCKEGKVEEAFKVCDEMSSGAVCLD 815



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 91/440 (20%), Positives = 166/440 (37%), Gaps = 49/440 (11%)

Query: 25  LKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETF 84
           L    A DV   + +  L PS +T   +L +  ++ E      +Y  IC   + P+   F
Sbjct: 200 LGFGFAADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLF 259

Query: 85  RSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQ 144
            +MI+   K    D A  L   ++++ + P    YN I+ G  +   +  A    ++M +
Sbjct: 260 STMINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVK 319

Query: 145 ANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEK 201
             V P   T+S  I+     E I +     +++   G    + V+  LI+ Y   G   +
Sbjct: 320 EKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISE 379

Query: 202 ARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG------------- 247
           A ++  D     +   S   ++L+       +   A  V EE+   G             
Sbjct: 380 ALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVIN 439

Query: 248 --CNLEPRAVIA-------LIEHLN-SEGELNRLIQLLEEVHDPDYWMDGCCRL------ 291
             C L+ R V A       L+ +L  ++G L  L+  L +       ++  CRL      
Sbjct: 440 WLC-LKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFV 498

Query: 292 ---ILHCVRFKQLSSATDL---LKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGL 345
              +        L  A ++   LK L+D  +   +     ++ +           V+ G 
Sbjct: 499 PNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLIS--GCCKEGKVKEGF 556

Query: 346 DLLQFIKDEL---GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWM 402
           +L    K+E+   G+ P     + LL    NA  +  A  +W E +  G   NV +Y  M
Sbjct: 557 EL----KEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVM 612

Query: 403 YKAFLASGNRKSASKLLSKM 422
              +  +   +    LL+++
Sbjct: 613 IDGYCKANKVEEGENLLNEL 632



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 86/461 (18%), Positives = 173/461 (37%), Gaps = 47/461 (10%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
            K +++PS  +Y   I     L K+  A  V+++M +   VP+    N+++    +    
Sbjct: 318 VKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNI 377

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           +   +I   +    + PNS T  S+I    K      A ++L+++    L      ++ +
Sbjct: 378 SEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMV 437

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGG 179
           +     K     AL  ++EM   N++P+    + L+        + + ++ + +L   G 
Sbjct: 438 INWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGF 497

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAII 238
                   ALI+     G  ++  +++ D  E  +       + L+S     G+  +   
Sbjct: 498 VPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFE 557

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY---------WMDGCC 289
           + EE+ + G   +      L+  L +  +++   +L  E     Y          +DG C
Sbjct: 558 LKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYC 617

Query: 290 ------------------RLILHCVRFKQLSSATDLLKQLKDKFK-DDEM---------A 321
                             +L L+ V +  L  A  +   +   F+  D+M         A
Sbjct: 618 KANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCA 677

Query: 322 MEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAH 381
                    C I   D         LL  ++ E GL P+  C   ++G       + + +
Sbjct: 678 TYSSLMHGLCNIGLVDDAK-----HLLDEMRKE-GLLPNVVCYTTIIGGYSKLGQMNKVN 731

Query: 382 LIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           ++ +E  +  +  N  +Y  M   F   G  K A+KLL++M
Sbjct: 732 IVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEM 772


>gi|15241779|ref|NP_198189.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|9502152|gb|AAF88005.1| similar to a large family of Arabidopsis thaliana salt inducible
           protein-like proteins; contains similarity to Pfam
           family PF01535 (Domain of unknown function),
           score=340.5, E=1.9e-98, N=2 [Arabidopsis thaliana]
 gi|332006410|gb|AED93793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 727

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/311 (21%), Positives = 134/311 (43%), Gaps = 40/311 (12%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
            P++ +Y  LI   C   K+  A +VV +M + E+ P+  T+N+I+      +  N+   
Sbjct: 403 VPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVV 462

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG-- 125
            +  +    +K N  T+ ++I     + + + A    + + E    P A +Y A+++G  
Sbjct: 463 FFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLC 522

Query: 126 ---------------------------------YFRKKDVQGALMVLKEMEQANVKPDSQ 152
                                            +  K + +    +L +ME+   KPDS 
Sbjct: 523 QVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSI 582

Query: 153 TFSYLIHNCSNEED---IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA 209
           T++ LI      +D   + +  EQ++  G   T   + A+I+AY + GE ++A ++  D 
Sbjct: 583 TYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDM 642

Query: 210 EI--PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
            +   V   + + + L++A +  G    A+ + EE+K            AL + LN + +
Sbjct: 643 GLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLNEKTQ 702

Query: 268 LNRLIQLLEEV 278
              L++L++E+
Sbjct: 703 GETLLKLMDEM 713



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 102/443 (23%), Positives = 177/443 (39%), Gaps = 75/443 (16%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETI-------NSILHAC 56
           +++I P   +   LI   C   +V  AL+V EQM +G+       I       N+++   
Sbjct: 322 EVKIRPDVVTLGILINTLCKSRRVDEALEVFEQM-RGKRTDDGNVIKADSIHFNTLIDGL 380

Query: 57  ------EESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEM 110
                 +E+ E  LVR    M       PN+ T+  +I    +    ++A  ++  +KE 
Sbjct: 381 CKVGRLKEAEEL-LVR----MKLEERCVPNAVTYNCLIDGYCRAGKLETAKEVVSRMKED 435

Query: 111 NLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDI 167
            + P     N I+ G  R   +  A++   +ME+  VK +  T+  LIH C   SN E  
Sbjct: 436 EIKPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKA 495

Query: 168 IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSAL 227
           + +YE++  AG                 C           DA+I          AL+S L
Sbjct: 496 MYWYEKMLEAG-----------------CSP---------DAKI--------YYALISGL 521

Query: 228 ASHGRTSDAIIVYEEIKEAGCNLEPRAVIALI----EHLNSEGELNRLIQLLEEVHDPDY 283
               R  DAI V E++KE G +L+  A   LI    +  N+E     L  + +E   PD 
Sbjct: 522 CQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDS 581

Query: 284 WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQI 343
                  LI    + K   S   +++Q+++   D  +       + +C +   D      
Sbjct: 582 ITYNT--LISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELD------ 633

Query: 344 GLDLLQFIKDELGL----PPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSY 399
             + L+  KD +GL     P+    + L+ A     +  +A  + +E +   +  NV +Y
Sbjct: 634 --EALKLFKD-MGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETY 690

Query: 400 LWMYKAFLASGNRKSASKLLSKM 422
             ++K        ++  KL+ +M
Sbjct: 691 NALFKCLNEKTQGETLLKLMDEM 713



 Score = 45.4 bits (106), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 94/194 (48%), Gaps = 19/194 (9%)

Query: 30  ALDVVEQMVQGELV--PSTETINSILHACEESYEFNLV--RRIYPMICH---HNLKPNSE 82
           A  V+++M+Q E V  P+  T + +LH   E ++  L+   +I  +I     H + PNS 
Sbjct: 204 AFKVLDEMLQKESVFPPNRITADIVLH---EVWKERLLTEEKIIALISRFSSHGVSPNSV 260

Query: 83  TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM 142
                IS   K    ++A+ +L DL +      A  +NA+++   R  D+     ++ +M
Sbjct: 261 WLTRFISSLCKNARANTAWDILSDLMKNKTPLEAPPFNALLSCLGRNMDISRMNDLVLKM 320

Query: 143 EQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQL---KSAGGQITK---YVFMALINAY 193
           ++  ++PD  T   LI+  C +   ++ ++ +EQ+   ++  G + K     F  LI+  
Sbjct: 321 DEVKIRPDVVTLGILINTLCKSRRVDEALEVFEQMRGKRTDDGNVIKADSIHFNTLIDGL 380

Query: 194 TTCGEFEKARQVVL 207
              G  ++A ++++
Sbjct: 381 CKVGRLKEAEELLV 394


>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
 gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 87/405 (21%), Positives = 169/405 (41%), Gaps = 17/405 (4%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHH-NLKPNSETFR 85
           V+ AL V  Q+   +  P+  T NS++    +      +  +Y  +C+  +  P++ T+ 
Sbjct: 147 VNKALSVFYQIKSRKCKPTASTYNSMILMLMQEGHHEKIHELYHEMCNEGDCFPDTMTYS 206

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
            ++S  VK+   D A  L D++K   L PTA +Y  ++A YF+  D + AL +++EM+  
Sbjct: 207 VLVSAFVKLGRDDYAIRLFDEMKANGLHPTAKIYTTLLAIYFKSGD-EKALGLVQEMKDK 265

Query: 146 NVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
              P   T++ LI         ED    +  +   G +    +   LIN +   G  E A
Sbjct: 266 GCAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLEDA 325

Query: 203 RQVVLDAEIPVKSRSEV---KSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALI 259
            + + D    +K    V    + + +   S    S+A   +E++K  G          LI
Sbjct: 326 LK-LFDQMRSLKCAPNVVTYNTVIKALFESKAPASEAASWFEKMKANGVTPSSFTYSILI 384

Query: 260 EHLNSEGELNRLIQLLEEVHDPDY--WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKD 317
           +       + + + LLEE+ +  +       C LI    + K+  +A +L  +LK+    
Sbjct: 385 DGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLELKENCGR 444

Query: 318 DEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDL 377
               +   ++ +   +     P   +  DL   +K ++G  P     + L+   V A  +
Sbjct: 445 SSARI---YAVMIKNLGKCGRPSEAV--DLFNEMK-KIGCNPDVYAYNALMSGLVRAGMI 498

Query: 378 KRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           + A    +  E  G   ++ S+  +      +G  + A+++  KM
Sbjct: 499 EEAFSALRTMEENGCTPDLNSHNIILNGLARTGRPEQATEMFMKM 543



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/203 (20%), Positives = 94/203 (46%), Gaps = 3/203 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           +TPSS +Y  LI   C   +V  AL ++E+M +    P      S+++A  ++  +    
Sbjct: 373 VTPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAAN 432

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +  +  + ++  +  MI    K      A  L +++K++   P    YNA+M+G 
Sbjct: 433 ELFLELKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGL 492

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITK 183
            R   ++ A   L+ ME+    PD  + + +++  +     E   + + ++K +  +   
Sbjct: 493 VRAGMIEEAFSALRTMEENGCTPDLNSHNIILNGLARTGRPEQATEMFMKMKDSLIKPDA 552

Query: 184 YVFMALINAYTTCGEFEKARQVV 206
             +  ++ + +  G FE+A +++
Sbjct: 553 VSYNTILGSLSRSGMFEEAAKLM 575



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 87/194 (44%), Gaps = 10/194 (5%)

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM-EQANVKPDS 151
           K K  + A S+   +K     PTAS YN+++    ++   +    +  EM  + +  PD+
Sbjct: 143 KAKMVNKALSVFYQIKSRKCKPTASTYNSMILMLMQEGHHEKIHELYHEMCNEGDCFPDT 202

Query: 152 QTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
            T+S L+        ++  I+ ++++K+ G   T  ++  L+  Y   G+ EKA  +V  
Sbjct: 203 MTYSVLVSAFVKLGRDDYAIRLFDEMKANGLHPTAKIYTTLLAIYFKSGD-EKALGLV-- 259

Query: 209 AEIPVKSRSE---VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
            E+  K  +      + L+  L   GR  DA  V+  + + GC  +   +  LI      
Sbjct: 260 QEMKDKGCAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKA 319

Query: 266 GELNRLIQLLEEVH 279
           G L   ++L +++ 
Sbjct: 320 GRLEDALKLFDQMR 333


>gi|357118215|ref|XP_003560853.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Brachypodium distachyon]
          Length = 597

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 133/298 (44%), Gaps = 21/298 (7%)

Query: 3   AKLE---ITPSSASYKKLITYSCDLLKVHVALD------VVEQMVQGELVPSTETINSIL 53
           AK+E   +TP++ +   ++   C + +V  AL+       V    +G  V  +  + + L
Sbjct: 270 AKMEKERVTPNAVTLNTIVGGLCWVGRVGAALEFFREKRTVWPEARGNAVTYSTLVGAFL 329

Query: 54  HACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLM 113
           H         L    + M+   N  P++  + +MIS   +    D A+S+   +K+    
Sbjct: 330 HTNNVGVAMEL---FHEMVDEGN-SPDAIMYFTMISGLTQAGRLDDAWSMATSMKKAGFQ 385

Query: 114 PTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQ 173
             A  YN ++ G+ R+K +  A  +L EM++A ++PD  T++ L+       D +   E 
Sbjct: 386 LDAKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGDFLAVDEL 445

Query: 174 LK---SAGGQITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALAS 229
           L      G + +   F  LI+ Y   G+ ++A ++     E  ++  + + + L+  L  
Sbjct: 446 LGKMIDGGCRPSVVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTLIDFLCK 505

Query: 230 HGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDY 283
              TS AI +++E++E           AL++ L  +    +  +L++ + +    PDY
Sbjct: 506 SRDTSLAIELFDEMREKHVPANVTTFNALLKGLRDKNMPEKAFELMDLMREGRCTPDY 563



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 79/172 (45%), Gaps = 8/172 (4%)

Query: 7   ITPSSASYKKLITYSC---DLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           + P   +Y  L++  C   D L V    +++ +M+ G   PS  T  +++H   +  + +
Sbjct: 419 LQPDVYTYNTLLSGLCKAGDFLAVD---ELLGKMIDGGCRPSVVTFGTLIHGYCKVGQID 475

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              RI+  +    ++PN+  + ++I    K +D   A  L D+++E ++    + +NA++
Sbjct: 476 EALRIFRSMDESGIQPNTVIYNTLIDFLCKSRDTSLAIELFDEMREKHVPANVTTFNALL 535

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH--NCSNEEDIIKYYEQ 173
            G   K   + A  ++  M +    PD  T   L+       E D +K++ Q
Sbjct: 536 KGLRDKNMPEKAFELMDLMREGRCTPDYVTIDILMEWLPVIGETDRLKHFMQ 587



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 78/428 (18%), Positives = 159/428 (37%), Gaps = 71/428 (16%)

Query: 35  EQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKI 94
           + +  G   P T   N++L A  ++ +   + +++  +   +++PN  T+  ++    K 
Sbjct: 126 DSLAAGAPPPDTSAFNTLLDALAQAGDLPGMTQLFASMRDASVRPNVVTYGILVKGLCKA 185

Query: 95  KDFDSAYSLLDDLK--EMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA--NVKPD 150
                A S+LD +   E ++ P   M N I+ G  +   +Q A+  ++E  ++     P+
Sbjct: 186 GRVGDALSVLDGMSGPESDVCPDVVMLNNIVDGLCKTGRLQQAVKFVEERMRSVHGCAPN 245

Query: 151 SQTFSYLIH------NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGE----FE 200
           + T++ L H      N     +++   E+ +     +T    +  +      G     F 
Sbjct: 246 TVTYNCLAHAFCRAGNVGMACELVAKMEKERVTPNAVTLNTIVGGLCWVGRVGAALEFFR 305

Query: 201 KARQVVLDAEIPVKSRSEVKSA-------------------------------LVSALAS 229
           + R V  +A     + S +  A                               ++S L  
Sbjct: 306 EKRTVWPEARGNAVTYSTLVGAFLHTNNVGVAMELFHEMVDEGNSPDAIMYFTMISGLTQ 365

Query: 230 HGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYW- 284
            GR  DA  +   +K+AG  L+ +A   LI        LN   +LL E+ +    PD + 
Sbjct: 366 AGRLDDAWSMATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYT 425

Query: 285 ----MDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPD 340
               + G C+            +  +LL ++ D      +         +C++   D   
Sbjct: 426 YNTLLSGLCKA-------GDFLAVDELLGKMIDGGCRPSVVTFGTLIHGYCKVGQID--- 475

Query: 341 VQIGLDLLQFIK--DELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLS 398
                + L+  +  DE G+ P+    + L+     +RD   A  ++ E     +P NV +
Sbjct: 476 -----EALRIFRSMDESGIQPNTVIYNTLIDFLCKSRDTSLAIELFDEMREKHVPANVTT 530

Query: 399 YLWMYKAF 406
           +  + K  
Sbjct: 531 FNALLKGL 538


>gi|218194637|gb|EEC77064.1| hypothetical protein OsI_15455 [Oryza sativa Indica Group]
          Length = 864

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/407 (20%), Positives = 171/407 (42%), Gaps = 20/407 (4%)

Query: 22  CDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNS 81
           C + ++  A  +V++MV   + P   T + I+    +S   +   R+   +     +PNS
Sbjct: 236 CKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNS 295

Query: 82  ETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKE 141
            T+ S+I        ++ +  +   +    ++PT    N+ +   F+      A  +   
Sbjct: 296 ITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDS 355

Query: 142 MEQANVKPDSQTFSYLIHNCSNEED-----IIKYYEQLKSAGGQITKYVFMALINAYTTC 196
           M     KPD  ++S ++H  +   D     +   +  + + G    K+VF  LINAY  C
Sbjct: 356 MVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARC 415

Query: 197 GEFEKARQVVLDAEIPVKSRSEVKSA-LVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255
           G  +KA  +  D +        V  A ++S+L   GR  DA+  +  + + G        
Sbjct: 416 GMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVY 475

Query: 256 IALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC---CRLILHCVRFKQLSSATDLLKQLK 312
             LI+   + GEL +  +L+ E+ + D    G      +I +  +  +++   D++  + 
Sbjct: 476 GCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMV 535

Query: 313 DKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLL-GAC 371
              +   +       E +C +      +++    LL  +   +G+ P+      L+ G C
Sbjct: 536 QTGQRPNVVTFNSLMEGYCLVG-----NMEEAFALLDAMA-SIGIEPNCYIYGTLVDGYC 589

Query: 372 VNARDLKRAHLIWKEYENAGL-PYNVLSYLWMYKAFLASGNRKSASK 417
            N R +  A  ++++  + G+ P +VL  + ++  F A   R +A+K
Sbjct: 590 KNGR-IDDALTVFRDMLHKGVKPTSVLYSIILHGLFQA--RRTTAAK 633



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/300 (19%), Positives = 131/300 (43%), Gaps = 9/300 (3%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVP-STETINSILHACEESYEFN 63
           + + PS A Y  LI   C+  ++  A +++ +M+  ++ P   +  +SI++   +     
Sbjct: 466 IGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVA 525

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             + I  M+     +PN  TF S++     + + + A++LLD +  + + P   +Y  ++
Sbjct: 526 EGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLV 585

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQ 180
            GY +   +  AL V ++M    VKP S  +S ++H            K + ++  +G  
Sbjct: 586 DGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTT 645

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAII 238
           ++ + +  ++         ++A  ++L+    +  + ++ +   ++SA+   GR  +A  
Sbjct: 646 VSIHTYGVVLGGLCRNNCTDEA-NMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKE 704

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRF 298
           +++ I   G     +    +I +L  E        L   V    +  D   RL+ H VR 
Sbjct: 705 LFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDS--RLLNHIVRM 762



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 71/353 (20%), Positives = 143/353 (40%), Gaps = 52/353 (14%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  LI     + +  + L +V ++++  L P   +  S+++   +  E +    +
Sbjct: 154 PTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSY-SLIYGFVKDGEVDKAHCL 212

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    + P      S+I    K+K+ D A S++  + +  + P    Y+ I+ G  +
Sbjct: 213 FLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCK 272

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS-----NEEDIIKYYEQLKSAGGQITK 183
            K +  A  VL++M +A  +P+S T++ LIH  S     NE   ++ ++Q+ S G   T 
Sbjct: 273 SKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNES--VRVFKQMSSCGVIPTV 330

Query: 184 YVFMALINAYTTCGEFEKAR----QVVLDAEIP--------------------------- 212
               + I+A    G   +A+     +VL    P                           
Sbjct: 331 DNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIF 390

Query: 213 -------VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
                  +     V + L++A A  G    A++++E+++  G   +      +I  L   
Sbjct: 391 NLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRI 450

Query: 266 GELNRLIQLLEEVHD----PDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDK 314
           G L+  +     + D    P   + GC  LI  C    +L  A +L+ ++ +K
Sbjct: 451 GRLDDALHKFNHMVDIGVPPSEAVYGC--LIQGCCNHGELVKAKELISEMMNK 501


>gi|15233137|ref|NP_191711.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183498|sp|Q9M316.1|PP292_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g61520, mitochondrial; Flags: Precursor
 gi|6850843|emb|CAB71082.1| putative protein [Arabidopsis thaliana]
 gi|332646696|gb|AEE80217.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 766

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/310 (21%), Positives = 134/310 (43%), Gaps = 40/310 (12%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P++ +Y  LI   C   K+  A +VV +M + E+ P+  T+N+I+      +  N+    
Sbjct: 404 PNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVVF 463

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG--- 125
           +  +    +K N  T+ ++I     + + + A    + + E    P A +Y A+++G   
Sbjct: 464 FMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQ 523

Query: 126 --------------------------------YFRKKDVQGALMVLKEMEQANVKPDSQT 153
                                           +  K + +    +L +ME+   KPDS T
Sbjct: 524 VRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNTEKVYEMLTDMEKEGKKPDSIT 583

Query: 154 FSYLIHNCSNEED---IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAE 210
           ++ LI      +D   + +  EQ++  G   T   + A+I+AY + GE ++A ++  D  
Sbjct: 584 YNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMG 643

Query: 211 I--PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGEL 268
           +   V   + + + L++A +  G    A+ + EE+K            AL + LN + + 
Sbjct: 644 LHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLNEKTQG 703

Query: 269 NRLIQLLEEV 278
             L++L++E+
Sbjct: 704 ETLLKLMDEM 713



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 124/277 (44%), Gaps = 46/277 (16%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVR 66
           +P +  Y  LI+  C + + H A+ VVE++ +G         N ++   C++    N   
Sbjct: 508 SPDAKIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDK----NNTE 563

Query: 67  RIYPMIC---HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
           ++Y M+        KP+S T+ ++IS   K KDF+S   +++ ++E  L PT + Y A++
Sbjct: 564 KVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVI 623

Query: 124 AGYFRKKDVQGALMVLKEME-QANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQIT 182
             Y    ++  AL + K+M   + V P++     +I+N                      
Sbjct: 624 DAYCSVGELDEALKLFKDMGLHSKVNPNT-----VIYNI--------------------- 657

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYE 241
                 LINA++  G F +A  +  + ++  V+   E  +AL   L    +    + + +
Sbjct: 658 ------LINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLNEKTQGETLLKLMD 711

Query: 242 EIKEAGCNLEPRAVIA--LIEHLNSEGELNRLIQLLE 276
           E+ E  C  EP  +    L+E L+   EL +L + ++
Sbjct: 712 EMVEQSC--EPNQITMEILMERLSGSDELVKLRKFMQ 746



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 101/443 (22%), Positives = 177/443 (39%), Gaps = 75/443 (16%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETI-------NSILHAC 56
           +++I P   +   LI   C   +V  AL+V E+M +G+       I       N+++   
Sbjct: 322 EVKIRPDVVTLGILINTLCKSRRVDEALEVFEKM-RGKRTDDGNVIKADSIHFNTLIDGL 380

Query: 57  ------EESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEM 110
                 +E+ E  LVR    M       PN+ T+  +I    +    ++A  ++  +KE 
Sbjct: 381 CKVGRLKEAEEL-LVR----MKLEERCAPNAVTYNCLIDGYCRAGKLETAKEVVSRMKED 435

Query: 111 NLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDI 167
            + P     N I+ G  R   +  A++   +ME+  VK +  T+  LIH C   SN E  
Sbjct: 436 EIKPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKA 495

Query: 168 IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSAL 227
           + +YE++  AG                 C           DA+I          AL+S L
Sbjct: 496 MYWYEKMLEAG-----------------CSP---------DAKI--------YYALISGL 521

Query: 228 ASHGRTSDAIIVYEEIKEAGCNLEPRAVIALI----EHLNSEGELNRLIQLLEEVHDPDY 283
               R  DAI V E++KE G +L+  A   LI    +  N+E     L  + +E   PD 
Sbjct: 522 CQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNTEKVYEMLTDMEKEGKKPDS 581

Query: 284 WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQI 343
                  LI    + K   S   +++Q+++   D  +       + +C +   D      
Sbjct: 582 ITYNT--LISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELD------ 633

Query: 344 GLDLLQFIKDELGL----PPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSY 399
             + L+  KD +GL     P+    + L+ A     +  +A  + +E +   +  NV +Y
Sbjct: 634 --EALKLFKD-MGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETY 690

Query: 400 LWMYKAFLASGNRKSASKLLSKM 422
             ++K        ++  KL+ +M
Sbjct: 691 NALFKCLNEKTQGETLLKLMDEM 713



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 94/194 (48%), Gaps = 19/194 (9%)

Query: 30  ALDVVEQMVQGELV--PSTETINSILHACEESYEFNLV--RRIYPMICH---HNLKPNSE 82
           A  V+++M+Q E V  P+  T + +LH   E ++  L+   +I  +I     H + PNS 
Sbjct: 204 AFKVLDEMLQKESVFPPNRITADIVLH---EVWKGRLLTEEKIIALISRFSSHGVSPNSV 260

Query: 83  TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM 142
                IS   K    ++A+ +L DL +      A  +NA+++   R  D+     ++ +M
Sbjct: 261 WLTRFISSLCKNARANAAWDILSDLMKNKTPLEAPPFNALLSCLGRNMDISRMNDLVLKM 320

Query: 143 EQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQL---KSAGGQITK---YVFMALINAY 193
           ++  ++PD  T   LI+  C +   ++ ++ +E++   ++  G + K     F  LI+  
Sbjct: 321 DEVKIRPDVVTLGILINTLCKSRRVDEALEVFEKMRGKRTDDGNVIKADSIHFNTLIDGL 380

Query: 194 TTCGEFEKARQVVL 207
              G  ++A ++++
Sbjct: 381 CKVGRLKEAEELLV 394


>gi|159465707|ref|XP_001691064.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
 gi|158279750|gb|EDP05510.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
          Length = 630

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 93/199 (46%), Gaps = 3/199 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  L+     L +   A+ V++ M Q  + P   T N+++ AC    +      +
Sbjct: 136 PNVVTYNTLVDVYGKLGRWERAIHVLDLMKQEGVEPVLRTYNTLIIACNMCNQPREALAV 195

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           Y  +      PNS T+ ++IS   K      A  +  ++   N+  +   Y+++++   +
Sbjct: 196 YQRLLSDGYTPNSTTYNALISAYGKTMQLGKALEVYQEMLRQNMERSVITYSSLISACEK 255

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYV 185
               + AL +  EM+Q N  P++ T++ L+  C+     E   + +EQ+ + G       
Sbjct: 256 AGQWETALRIFNEMQQDNCVPNTVTYNSLVTACAQGGQWEKATEVFEQMTAHGCTPDVVT 315

Query: 186 FMALINAYTTCGEFEKARQ 204
           + ALI+AY   G+++KA Q
Sbjct: 316 YTALISAYERGGQWQKALQ 334



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 77/151 (50%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           TP+S +Y  LI+     +++  AL+V ++M++  +  S  T +S++ ACE++ ++    R
Sbjct: 205 TPNSTTYNALISAYGKTMQLGKALEVYQEMLRQNMERSVITYSSLISACEKAGQWETALR 264

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           I+  +   N  PN+ T+ S+++   +   ++ A  + + +      P    Y A+++ Y 
Sbjct: 265 IFNEMQQDNCVPNTVTYNSLVTACAQGGQWEKATEVFEQMTAHGCTPDVVTYTALISAYE 324

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
           R    Q AL    +M     KPD+  ++ +I
Sbjct: 325 RGGQWQKALQAFGKMCMQGCKPDAIVYNAII 355



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/279 (21%), Positives = 125/279 (44%), Gaps = 18/279 (6%)

Query: 17  LITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHN 76
           L  YS D   V  A++++ +M Q  +  +  T  ++++ C +  +  L   IY  +   N
Sbjct: 77  LCIYSQD---VDRAMELMNEMRQRNIERNVHTFTALMNVCIKCGKLPLALEIYNNMRAAN 133

Query: 77  LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGAL 136
             PN  T+ +++ +  K+  ++ A  +LD +K+  + P    YN ++         + AL
Sbjct: 134 CMPNVVTYNTLVDVYGKLGRWERAIHVLDLMKQEGVEPVLRTYNTLIIACNMCNQPREAL 193

Query: 137 MVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAY 193
            V + +      P+S T++ LI        +   ++ Y+++     + +   + +LI+A 
Sbjct: 194 AVYQRLLSDGYTPNSTTYNALISAYGKTMQLGKALEVYQEMLRQNMERSVITYSSLISAC 253

Query: 194 TTCGEFEKARQVVLDAE----IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
              G++E A ++  + +    +P    +   ++LV+A A  G+   A  V+E++   GC 
Sbjct: 254 EKAGQWETALRIFNEMQQDNCVP---NTVTYNSLVTACAQGGQWEKATEVFEQMTAHGCT 310

Query: 250 LEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC 288
            +     ALI      G+  + +Q   ++      M GC
Sbjct: 311 PDVVTYTALISAYERGGQWQKALQAFGKMC-----MQGC 344



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/235 (20%), Positives = 100/235 (42%), Gaps = 39/235 (16%)

Query: 83  TFRSMISLNVKIKDFDSAYSLLDDLKEMNL------------------------------ 112
           ++ + ISL +  +D D A  L++++++ N+                              
Sbjct: 70  SYTATISLCIYSQDVDRAMELMNEMRQRNIERNVHTFTALMNVCIKCGKLPLALEIYNNM 129

Query: 113 -----MPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNE 164
                MP    YN ++  Y +    + A+ VL  M+Q  V+P  +T++ LI   + C+  
Sbjct: 130 RAANCMPNVVTYNTLVDVYGKLGRWERAIHVLDLMKQEGVEPVLRTYNTLIIACNMCNQP 189

Query: 165 EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SAL 223
            + +  Y++L S G       + ALI+AY    +  KA +V  +       RS +  S+L
Sbjct: 190 REALAVYQRLLSDGYTPNSTTYNALISAYGKTMQLGKALEVYQEMLRQNMERSVITYSSL 249

Query: 224 VSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           +SA    G+   A+ ++ E+++  C        +L+      G+  +  ++ E++
Sbjct: 250 ISACEKAGQWETALRIFNEMQQDNCVPNTVTYNSLVTACAQGGQWEKATEVFEQM 304


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 97/237 (40%), Gaps = 38/237 (16%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           +TP   ++  LI   C       AL + + +++  L P   T NS++       +     
Sbjct: 398 VTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKAN 457

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +    + PN  T+  +I  + +    + A+  LD++ +   +P    YN+I+ GY
Sbjct: 458 ELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGY 517

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE--------------------- 165
            R  +V+     L++M Q NV PD  TF+ LIH    EE                     
Sbjct: 518 CRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDA 577

Query: 166 -----------------DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
                            D  + ++ +  +G +  +Y +M+LIN + T G  ++A Q+
Sbjct: 578 VTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQL 634



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/246 (21%), Positives = 105/246 (42%), Gaps = 6/246 (2%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           A   + P   +Y  ++   C   +   A +V   M Q  + P   + N ++       E 
Sbjct: 219 ANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEV 278

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
               + Y  + H  + P+  +F  +I L  +  + D A + L ++K + L+P   +Y  +
Sbjct: 279 KEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMV 338

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGG 179
           + G+ R   +  AL V  EM      PD  T++ L++    +  ++   K   +++  G 
Sbjct: 339 IGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGV 398

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAI 237
                 F  LI+ Y   G FE A Q + D  +  + R +V +  +L+  +   G  + A 
Sbjct: 399 TPDLCTFTTLIHGYCRQGNFENALQ-LFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKAN 457

Query: 238 IVYEEI 243
            +++++
Sbjct: 458 ELWDDM 463



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 118/283 (41%), Gaps = 15/283 (5%)

Query: 22  CDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNS 81
           C  L+   A  V+ +M +  + P   T N ++ A   + + +    +   + +  LKP  
Sbjct: 168 CKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGI 227

Query: 82  ETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKE 141
            T+ S++    K + FD A  +   + + ++ P    +N ++ G+ R  +V+ A+   KE
Sbjct: 228 VTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKE 287

Query: 142 MEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGE 198
           M+   V PD  +FS LI   S   ++     Y  ++K  G      ++  +I  +   G 
Sbjct: 288 MQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGS 347

Query: 199 FEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI 256
             +A + V D  +      +V +   L++ L    R  DA  +  E++E G   +     
Sbjct: 348 MSEALR-VRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFT 406

Query: 257 ALIEHLNSEGELNRLIQ----LLEEVHDPDY-----WMDGCCR 290
            LI     +G     +Q    LL +   PD       +DG CR
Sbjct: 407 TLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCR 449



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 89/205 (43%), Gaps = 3/205 (1%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           L + P    Y  +I   C    +  AL V ++MV    +P   T N++L+   + +    
Sbjct: 326 LGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLD 385

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
             ++   +    + P+  TF ++I    +  +F++A  L D L    L P    YN+++ 
Sbjct: 386 AEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLID 445

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI-HNC--SNEEDIIKYYEQLKSAGGQI 181
           G  RK D+  A  +  +M    + P+  T+S LI  +C     ED   + +++   G   
Sbjct: 446 GMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLP 505

Query: 182 TKYVFMALINAYTTCGEFEKARQVV 206
               + ++I  Y   G  +K +Q +
Sbjct: 506 NIRTYNSIIKGYCRSGNVKKGQQFL 530


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/462 (20%), Positives = 189/462 (40%), Gaps = 61/462 (13%)

Query: 10  SSASYKKLITYSCDLLK-VHVALDVVEQMVQGELVPSTETINSILHACEESYE-FNLVRR 67
           SS++   L+  SC  +  ++ AL +V        +P   + N+IL A   + +   +   
Sbjct: 130 SSSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEG 189

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           I+  +    + PN  T+  +I       + +       +++    +P    YN I+  Y 
Sbjct: 190 IFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYC 249

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYV-- 185
           + + +  A  +L+ M    + P+  +++ +I+    E  + +  E L+    +  +YV  
Sbjct: 250 KLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKR--RYVPD 307

Query: 186 ---FMALINAYTTCGEFEKARQVVLDAEIPVKSRSE---VKSALVSALASHGRTSDAIIV 239
              F  LIN Y   G F +A  +VL AE+     S      + L++++   G  + A+  
Sbjct: 308 RVTFNTLINGYCNVGNFHQA--LVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEF 365

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY---------WMDGCCR 290
            +++++ G +   R    LI+  + +G L +  Q+++E+ +  +          ++G   
Sbjct: 366 LDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALING--- 422

Query: 291 LILHCVRFKQLSSATDLLKQLKDK-FKDDEMAMEYHFSEIFCQ--------------IAT 335
              HC+   ++  A+ LL+++ ++ F  D ++     S  FC+              +A 
Sbjct: 423 ---HCI-LGRMEDASGLLQEMIERGFIPDVVSYSTIISG-FCRNQELEKAFQLKVEMVAK 477

Query: 336 TDPPDVQIGLDLLQFIKDE---------------LGLPPSRKCLDFLLGACVNARDLKRA 380
              PDV     L+Q +  +               LGLPP       L+ A     DL +A
Sbjct: 478 GISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKA 537

Query: 381 HLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
             +  E    G   ++++Y  +   F      K A +LL K+
Sbjct: 538 LRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKL 579



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/286 (20%), Positives = 126/286 (44%), Gaps = 8/286 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  SY  +I   C   ++    +++E+M +   VP   T N++++       F+   
Sbjct: 269 LNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQAL 328

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +  + L PN  T+ ++I+   K  + + A   LD +++  L P    Y  ++ G+
Sbjct: 329 VLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGF 388

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
            ++  ++ A  ++KEM +    P   T++ LI+        ED     +++   G     
Sbjct: 389 SQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDV 448

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRS---EVKSALVSALASHGRTSDAIIVY 240
             +  +I+ +    E EKA Q  L  E+  K  S      S+L+  L    R  +   ++
Sbjct: 449 VSYSTIISGFCRNQELEKAFQ--LKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLF 506

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
           +E+   G   +     +LI     EG+L++ ++L +E+    +  D
Sbjct: 507 QEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPD 552



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 69/340 (20%), Positives = 136/340 (40%), Gaps = 58/340 (17%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           +K    P   ++  LI   C++   H AL +  +MV+  L P+  T  +++++  ++   
Sbjct: 300 SKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNL 359

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA- 121
           N        +    L PN  T+ ++I    +      AY ++ ++ E    PT   YNA 
Sbjct: 360 NRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNAL 419

Query: 122 ----------------------------------IMAGYFRKKDVQGALMVLKEMEQANV 147
                                             I++G+ R ++++ A  +  EM    +
Sbjct: 420 INGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGI 479

Query: 148 KPDSQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204
            PD  T+S LI     +    ++   ++++ S G    +  + +LINAY   G+ +KA +
Sbjct: 480 SPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALR 539

Query: 205 VVLDAEIPVKSRSE---VKSALVSALASHGRTSDAI---------------IVYEEIKEA 246
             L  E+  K  S      + L++      RT +A                I Y  + + 
Sbjct: 540 --LHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDN 597

Query: 247 GCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
             NLE ++ +AL++    +G +N   ++LE +    Y ++
Sbjct: 598 CNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLN 637



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 118/281 (41%), Gaps = 24/281 (8%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   SY  +I+  C   ++  A  +  +MV   + P   T +S++    +      V  +
Sbjct: 446 PDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDL 505

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    L P+  T+ S+I+      D D A  L D++ +    P    YN ++ G+ +
Sbjct: 506 FQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNK 565

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMA 188
           +   + A  +L ++      P+  T++ LI NC+N E         KSA         +A
Sbjct: 566 QSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLE--------FKSA---------LA 608

Query: 189 LINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           L+  +   G   +A +V+    +   K   EV + ++   +  G    A  +Y+E+  +G
Sbjct: 609 LMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSG 668

Query: 248 CNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC 288
                  ++AL + L  EG+   L QLL      DY +  C
Sbjct: 669 FAPHSVTIMALAKSLYHEGKEVELNQLL------DYTLKSC 703


>gi|32489931|emb|CAE05523.1| OSJNBa0038P21.16 [Oryza sativa Japonica Group]
 gi|38347491|emb|CAE05839.2| OSJNBa0091C07.1 [Oryza sativa Japonica Group]
          Length = 844

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/407 (20%), Positives = 171/407 (42%), Gaps = 20/407 (4%)

Query: 22  CDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNS 81
           C + ++  A  +V++MV   + P   T + I+    +S   +   R+   +     +PNS
Sbjct: 256 CKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNS 315

Query: 82  ETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKE 141
            T+ S+I        ++ +  +   +    ++PT    N+ +   F+      A  +   
Sbjct: 316 ITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDS 375

Query: 142 MEQANVKPDSQTFSYLIHNCSNEED-----IIKYYEQLKSAGGQITKYVFMALINAYTTC 196
           M     KPD  ++S ++H  +   D     +   +  + + G    K+VF  LINAY  C
Sbjct: 376 MVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARC 435

Query: 197 GEFEKARQVVLDAEIPVKSRSEVKSA-LVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255
           G  +KA  +  D +        V  A ++S+L   GR  DA+  +  + + G        
Sbjct: 436 GMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVY 495

Query: 256 IALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC---CRLILHCVRFKQLSSATDLLKQLK 312
             LI+   + GEL +  +L+ E+ + D    G      +I +  +  +++   D++  + 
Sbjct: 496 GCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMV 555

Query: 313 DKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLL-GAC 371
              +   +       E +C +      +++    LL  +   +G+ P+      L+ G C
Sbjct: 556 QTGQRPNVVTFNSLMEGYCLVG-----NMEEAFALLDAMA-SIGIEPNCYIYGTLVDGYC 609

Query: 372 VNARDLKRAHLIWKEYENAGL-PYNVLSYLWMYKAFLASGNRKSASK 417
            N R +  A  ++++  + G+ P +VL  + ++  F A   R +A+K
Sbjct: 610 KNGR-IDDALTVFRDMLHKGVKPTSVLYSIILHGLFQA--RRTTAAK 653



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/300 (19%), Positives = 131/300 (43%), Gaps = 9/300 (3%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVP-STETINSILHACEESYEFN 63
           + + PS A Y  LI   C+  ++  A +++ +M+  ++ P   +  +SI++   +     
Sbjct: 486 IGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVA 545

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             + I  M+     +PN  TF S++     + + + A++LLD +  + + P   +Y  ++
Sbjct: 546 EGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLV 605

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQ 180
            GY +   +  AL V ++M    VKP S  +S ++H            K + ++  +G  
Sbjct: 606 DGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTT 665

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAII 238
           ++ + +  ++         ++A  ++L+    +  + ++ +   ++SA+   GR  +A  
Sbjct: 666 VSIHTYGVVLGGLCRNNCTDEA-NMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKE 724

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRF 298
           +++ I   G     +    +I +L  E        L   V    +  D   RL+ H VR 
Sbjct: 725 LFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDS--RLLNHIVRM 782



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 71/353 (20%), Positives = 143/353 (40%), Gaps = 52/353 (14%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  LI     + +  + L +V ++++  L P   +  S+++   +  E +    +
Sbjct: 174 PTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSY-SLIYGFVKDGEVDKAHCL 232

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    + P      S+I    K+K+ D A S++  + +  + P    Y+ I+ G  +
Sbjct: 233 FLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCK 292

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS-----NEEDIIKYYEQLKSAGGQITK 183
            K +  A  VL++M +A  +P+S T++ LIH  S     NE   ++ ++Q+ S G   T 
Sbjct: 293 SKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNES--VRVFKQMSSCGVIPTV 350

Query: 184 YVFMALINAYTTCGEFEKAR----QVVLDAEIP--------------------------- 212
               + I+A    G   +A+     +VL    P                           
Sbjct: 351 DNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIF 410

Query: 213 -------VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
                  +     V + L++A A  G    A++++E+++  G   +      +I  L   
Sbjct: 411 NLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRI 470

Query: 266 GELNRLIQLLEEVHD----PDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDK 314
           G L+  +     + D    P   + GC  LI  C    +L  A +L+ ++ +K
Sbjct: 471 GRLDDALHKFNHMVDIGVPPSEAVYGC--LIQGCCNHGELVKAKELISEMMNK 521


>gi|125569067|gb|EAZ10582.1| hypothetical protein OsJ_00414 [Oryza sativa Japonica Group]
          Length = 1003

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 124/283 (43%), Gaps = 10/283 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           +  S+  Y  L+   C  ++V  A++V   MV   +     T  ++++      E  +  
Sbjct: 229 VKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMAL 288

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           RI   +      P+      MI    K +  + A+SL   L ++ ++P    YNA++   
Sbjct: 289 RITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKL 348

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITK 183
            + +    A  + KEM    ++P+  T++ LIH        ED +  +++++  G ++T 
Sbjct: 349 CKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTV 408

Query: 184 YVFMALINAYTTCGEFEKARQV----VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
           Y + +LIN Y   G  ++AR +    V +   P  +     S L++ L  +G  S  + +
Sbjct: 409 YPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASY---SPLIAGLCRNGDLSSCMEL 465

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPD 282
           + E+ E G         ALI     + +++   +L +++ D +
Sbjct: 466 HREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSN 508



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 90/429 (20%), Positives = 173/429 (40%), Gaps = 52/429 (12%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y  LI   C    +  A  ++  MV+  L P+  + + ++     + + +    ++  + 
Sbjct: 411 YNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMA 470

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
              +  N+ TF ++I+   K K  D A  L D + + N++P    +N ++ GY    +++
Sbjct: 471 ERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIR 530

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALI 190
            A  +  +M +  +KPD+ T+  LI        + K   +   L+++   +  +   AL+
Sbjct: 531 KAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALL 590

Query: 191 NAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVS-------ALASHGRTSDAIIVYEEI 243
             +   G F +     L  E+ V+    VK  LVS       AL  H +   + +++ E+
Sbjct: 591 YGFFREGRFTETYH--LWDEMAVRG---VKLDLVSFTIIVYAALKQHDK-EKSCVLFREM 644

Query: 244 KEAGCNLEPRAVIALIEHLNSEGE----LNRLIQLLEEVHDPDYWMDGCCRLILHCVRFK 299
           KE G   +      +I+ L+ E      LN   Q++ + + P+        LI +  +  
Sbjct: 645 KEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTV--LINNLCKSG 702

Query: 300 QLSSATDLLKQ------LKDKFK------------DDEMAMEYHFSEIFCQIATT----- 336
            L SA  L K+      L +KF             D E A + H + +   +A+      
Sbjct: 703 YLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASIVSFNI 762

Query: 337 ------DPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENA 390
                     +Q  +DL+  I  E G  P       ++       D+ +A  +W E    
Sbjct: 763 LIKGLCKAGKIQEAIDLMSKIT-ESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYK 821

Query: 391 GLPYNVLSY 399
           GL  +V++Y
Sbjct: 822 GLKPDVVAY 830



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/249 (19%), Positives = 103/249 (41%), Gaps = 4/249 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  LI   C    +  AL + ++M    +  +    NS+++   +    +  R
Sbjct: 369 LEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRAR 428

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +    L P + ++  +I+   +  D  S   L  ++ E  +      + A++ G+
Sbjct: 429 GLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGF 488

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
            + K +  A  +  +M  +NV P+  TF+ +I       N     + Y+Q+   G +   
Sbjct: 489 CKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDN 548

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEE 242
           Y + +LI+         KA + V D E      +    +AL+      GR ++   +++E
Sbjct: 549 YTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDE 608

Query: 243 IKEAGCNLE 251
           +   G  L+
Sbjct: 609 MAVRGVKLD 617



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 67/356 (18%), Positives = 142/356 (39%), Gaps = 87/356 (24%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           A+  I  ++ ++  LI   C   K+  A  + ++M+   ++P+  T N ++         
Sbjct: 470 AERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNI 529

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMIS----------LNVKIKDFDSAYSLLDDLKEMNL 112
               ++Y  +    LKP++ T+RS+IS           N  + D +++Y++L+     N 
Sbjct: 530 RKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLN-----NF 584

Query: 113 MPTASMYNAIMAGYF------------------------------RKKDVQGALMVLKEM 142
             TA +Y     G F                              ++ D + + ++ +EM
Sbjct: 585 SLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREM 644

Query: 143 EQANVKPDSQTFSYLIHNCSNEEDIIKY---YEQLKSAG--------------------- 178
           ++  VKPD   ++ +I   S EE++I+    ++Q+   G                     
Sbjct: 645 KEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYL 704

Query: 179 ------------GQI--TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--A 222
                       G +   K+ +   ++ + T G+ EKA+   L + +     + + S   
Sbjct: 705 GSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKD--LHSAMLQGHLASIVSFNI 762

Query: 223 LVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           L+  L   G+  +AI +  +I E+G + +  +   +I  L   G++N+  +L  E+
Sbjct: 763 LIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEM 818


>gi|22327132|ref|NP_680234.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174514|sp|Q9LKU8.1|PP401_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g28460
 gi|9502149|gb|AAF88002.1| contains similarity to Pfam family PF01535 (Domain of unknown
           function), score=340.5, E=1.9e-98, N=2 [Arabidopsis
           thaliana]
 gi|15529206|gb|AAK97697.1| AT5g28460/F21B23_120 [Arabidopsis thaliana]
 gi|27363272|gb|AAO11555.1| At5g28460/F21B23_120 [Arabidopsis thaliana]
 gi|332006418|gb|AED93801.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 766

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/311 (21%), Positives = 134/311 (43%), Gaps = 40/311 (12%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
            P++ +Y  LI   C   K+  A +VV +M + E+ P+  T+N+I+      +  N+   
Sbjct: 403 VPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVV 462

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG-- 125
            +  +    +K N  T+ ++I     + + + A    + + E    P A +Y A+++G  
Sbjct: 463 FFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLC 522

Query: 126 ---------------------------------YFRKKDVQGALMVLKEMEQANVKPDSQ 152
                                            +  K + +    +L +ME+   KPDS 
Sbjct: 523 QVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSI 582

Query: 153 TFSYLIHNCSNEED---IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA 209
           T++ LI      +D   + +  EQ++  G   T   + A+I+AY + GE ++A ++  D 
Sbjct: 583 TYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDM 642

Query: 210 EI--PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
            +   V   + + + L++A +  G    A+ + EE+K            AL + LN + +
Sbjct: 643 GLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLNEKTQ 702

Query: 268 LNRLIQLLEEV 278
              L++L++E+
Sbjct: 703 GETLLKLMDEM 713



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 102/443 (23%), Positives = 177/443 (39%), Gaps = 75/443 (16%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETI-------NSILHAC 56
           +++I P   +   LI   C   +V  AL+V EQM +G+       I       N+++   
Sbjct: 322 EVKIRPDVVTLGILINTLCKSRRVDEALEVFEQM-RGKRTDDGNVIKADSIHFNTLIDGL 380

Query: 57  ------EESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEM 110
                 +E+ E  LVR    M       PN+ T+  +I    +    ++A  ++  +KE 
Sbjct: 381 CKVGRLKEAEEL-LVR----MKLEERCVPNAVTYNCLIDGYCRAGKLETAKEVVSRMKED 435

Query: 111 NLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDI 167
            + P     N I+ G  R   +  A++   +ME+  VK +  T+  LIH C   SN E  
Sbjct: 436 EIKPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKA 495

Query: 168 IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSAL 227
           + +YE++  AG                 C           DA+I          AL+S L
Sbjct: 496 MYWYEKMLEAG-----------------CSP---------DAKI--------YYALISGL 521

Query: 228 ASHGRTSDAIIVYEEIKEAGCNLEPRAVIALI----EHLNSEGELNRLIQLLEEVHDPDY 283
               R  DAI V E++KE G +L+  A   LI    +  N+E     L  + +E   PD 
Sbjct: 522 CQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDS 581

Query: 284 WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQI 343
                  LI    + K   S   +++Q+++   D  +       + +C +   D      
Sbjct: 582 ITYNT--LISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELD------ 633

Query: 344 GLDLLQFIKDELGL----PPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSY 399
             + L+  KD +GL     P+    + L+ A     +  +A  + +E +   +  NV +Y
Sbjct: 634 --EALKLFKD-MGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETY 690

Query: 400 LWMYKAFLASGNRKSASKLLSKM 422
             ++K        ++  KL+ +M
Sbjct: 691 NALFKCLNEKTQGETLLKLMDEM 713



 Score = 45.4 bits (106), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 94/194 (48%), Gaps = 19/194 (9%)

Query: 30  ALDVVEQMVQGELV--PSTETINSILHACEESYEFNLV--RRIYPMICH---HNLKPNSE 82
           A  V+++M+Q E V  P+  T + +LH   E ++  L+   +I  +I     H + PNS 
Sbjct: 204 AFKVLDEMLQKESVFPPNRITADIVLH---EVWKERLLTEEKIIALISRFSSHGVSPNSV 260

Query: 83  TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM 142
                IS   K    ++A+ +L DL +      A  +NA+++   R  D+     ++ +M
Sbjct: 261 WLTRFISSLCKNARANTAWDILSDLMKNKTPLEAPPFNALLSCLGRNMDISRMNDLVLKM 320

Query: 143 EQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQL---KSAGGQITK---YVFMALINAY 193
           ++  ++PD  T   LI+  C +   ++ ++ +EQ+   ++  G + K     F  LI+  
Sbjct: 321 DEVKIRPDVVTLGILINTLCKSRRVDEALEVFEQMRGKRTDDGNVIKADSIHFNTLIDGL 380

Query: 194 TTCGEFEKARQVVL 207
              G  ++A ++++
Sbjct: 381 CKVGRLKEAEELLV 394


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/286 (19%), Positives = 124/286 (43%), Gaps = 4/286 (1%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           L I P   ++  LI   C    V  A  V++ M +  + P+  T NS++H      E   
Sbjct: 295 LNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVE 354

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
            R+++ ++     KP+  ++  +I+    +K  D A  L +++    L P    Y  ++ 
Sbjct: 355 ARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIH 414

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK- 183
            + +   ++ A  + K+M      PD  T+S L+     +  + K +   ++  G   K 
Sbjct: 415 AFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKP 474

Query: 184 --YVFMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVY 240
              ++  LI++    G    AR++  +  +  ++   ++ + +++ L   G   +A+  +
Sbjct: 475 NLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAF 534

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
            +++E GC     +   +I       + +R +QL+ E+ D  +  D
Sbjct: 535 RKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKGFVAD 580



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 79/422 (18%), Positives = 169/422 (40%), Gaps = 51/422 (12%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  +I   C + +   A  ++++M +    P   T ++++ +  +    N    I
Sbjct: 194 PDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDI 253

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    + P   ++ S+I        +  A ++L+++  +N+MP    ++ ++  + +
Sbjct: 254 FSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCK 313

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYV 185
           + +V  A  VLK M +  V+P+  T++ L+H  S + +++   K ++ + + G +   + 
Sbjct: 314 EGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFS 373

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
           +  LIN Y      ++A+Q                  L + +   G T +  + Y  +  
Sbjct: 374 YSILINGYCMVKRIDEAKQ------------------LFNEMIHQGLTPNT-VSYTTLIH 414

Query: 246 AGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQ--LSS 303
           A C L               G+L    +L +++H   Y  D C   +L     KQ  L  
Sbjct: 415 AFCQL---------------GKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGK 459

Query: 304 ATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDEL---GLPPS 360
           A  L + ++  +    + M     +  C+            L+  + +  EL   GL P 
Sbjct: 460 AFRLFRAMQGTYLKPNLVMYTILIDSMCKSGN---------LNHARKLFSELFVHGLQPD 510

Query: 361 RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420
            +    ++        L  A   +++ E  G P N  SY  + + FL   +   A +L+ 
Sbjct: 511 VQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIG 570

Query: 421 KM 422
           +M
Sbjct: 571 EM 572



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 89/468 (19%), Positives = 184/468 (39%), Gaps = 37/468 (7%)

Query: 9   PSSASYKKLITYSCDLLKVHVA-LDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           P    + KL++    + + + A + + +QM    L P+T T+N +++        +L   
Sbjct: 88  PCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTLNILINCFCLMQHVDLGFS 147

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +   +    L+P   TF ++I+   K  +F  A  L DD+      P    Y  I+ G  
Sbjct: 148 VLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLC 207

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKY 184
           +  +   A  ++K+M +   +PD  T+S LI + C +    + +  +  +K+ G   T  
Sbjct: 208 KMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVV 267

Query: 185 VFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
            + +LI    +   +++A  ++ +   + +       S L+      G   +A  V + +
Sbjct: 268 SYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTM 327

Query: 244 KEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLE---------EVHDPDYWMDGCCRLI 292
            E G  +EP  +   +L+   + + E+    +L +         +V      ++G C + 
Sbjct: 328 TEMG--VEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMV- 384

Query: 293 LHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIK 352
                 K++  A  L  ++  +               FCQ+       ++   +L + + 
Sbjct: 385 ------KRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLG-----KLREARELFKDMH 433

Query: 353 DELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNR 412
               LP        L G C     L +A  +++  +   L  N++ Y  +  +   SGN 
Sbjct: 434 TNGYLPDLCTYSVLLEGFCKQGY-LGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNL 492

Query: 413 KSASKLLSKM------PKDDPHVRFVIQACKQTYTIPSLQKERGFEKD 454
             A KL S++      P    +   +   CK+     +L+  R  E+D
Sbjct: 493 NHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEED 540


>gi|356530296|ref|XP_003533718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Glycine max]
          Length = 830

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 90/405 (22%), Positives = 176/405 (43%), Gaps = 24/405 (5%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL ++++M      P + T N +      +   +    +   +    + PN+ T+ ++I 
Sbjct: 341 ALSILKEMEDNNCPPDSITYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVID 400

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              K    D A  L   +K++   P    YN+++A   +K   +  + VL EM+     P
Sbjct: 401 AYGKAGREDDALRLFSKMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAP 460

Query: 150 DSQTFSYLIHNCSNEED---IIKYYEQLKSAGGQITKYVFMALINAYTTCG-EFEKAR-- 203
           +  T++ ++  CS E     + K   ++K+ G +  K  F  LI++Y  CG E + A+  
Sbjct: 461 NRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISSYARCGSEVDSAKMY 520

Query: 204 -QVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
            ++V     P  +     +AL++ALA  G    A  V ++++  G      +   L+   
Sbjct: 521 GEMVKSGFTPCVT---TYNALLNALAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHCY 577

Query: 263 NSEGELNRLIQLLEEVHD----PDYWMDGCCRLILH-CVRFKQLSSATDLLKQLKDKFKD 317
           +  G +  + ++ +E++D    P + +     L  H C   + +  A D L+  K  +K 
Sbjct: 578 SKAGNVRGIEKVEKEIYDGQVFPSWILLRTLVLSNHKCRHLRGMERAFDQLQ--KYGYKP 635

Query: 318 DEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDL 377
           D + +    S +F +             ++L FI  E GL P+    + L+   V   + 
Sbjct: 636 DLVVINSMLS-MFSRNKM-----FSKAREMLHFIH-ECGLQPNLFTYNCLMDLYVREDEC 688

Query: 378 KRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
            +A  + K  +N+    +V+SY  + K F   G  + A ++LS+M
Sbjct: 689 WKAEEVLKGIQNSVPEPDVVSYNTVIKGFCRKGLMQEAIRVLSEM 733



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/205 (21%), Positives = 92/205 (44%), Gaps = 3/205 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P S +Y +L         +   + V++ M    ++P+  T  +++ A  ++   +   R+
Sbjct: 355 PDSITYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRL 414

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +      PN  T+ S++++  K    +    +L ++K     P  + +N ++A    
Sbjct: 415 FSKMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSE 474

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYV 185
           +        VL+EM+    +PD  TF+ LI +   C +E D  K Y ++  +G       
Sbjct: 475 EGKHNYVNKVLREMKNCGFEPDKDTFNTLISSYARCGSEVDSAKMYGEMVKSGFTPCVTT 534

Query: 186 FMALINAYTTCGEFEKARQVVLDAE 210
           + AL+NA    G+++ A  V+ D +
Sbjct: 535 YNALLNALAHRGDWKAAESVIQDMQ 559



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/251 (20%), Positives = 108/251 (43%), Gaps = 4/251 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  SY  L+        V     V +++  G++ PS   + +++ +  +      + R 
Sbjct: 565 PNETSYSLLLHCYSKAGNVRGIEKVEKEIYDGQVFPSWILLRTLVLSNHKCRHLRGMERA 624

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +  +  KP+     SM+S+  + K F  A  +L  + E  L P    YN +M  Y R
Sbjct: 625 FDQLQKYGYKPDLVVINSMLSMFSRNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVR 684

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYV 185
           + +   A  VLK ++ +  +PD  +++ +I     +   ++ I+   ++ + G Q T   
Sbjct: 685 EDECWKAEEVLKGIQNSVPEPDVVSYNTVIKGFCRKGLMQEAIRVLSEMTTKGIQPTIVT 744

Query: 186 FMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +   ++ Y     F++A +V+    E   +        LV      G+  +A+    +IK
Sbjct: 745 YNTFLSGYAGMELFDEANEVIRFMIEHNCRPSELTYKILVDGYCKAGKHEEAMDFVTKIK 804

Query: 245 EAGCNLEPRAV 255
           E   + + ++V
Sbjct: 805 EIDISFDDKSV 815



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/171 (19%), Positives = 80/171 (46%), Gaps = 1/171 (0%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           L   P+  +Y  ++       +    + V+ +M      P+  T N++L  C E  + N 
Sbjct: 421 LGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNY 480

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
           V ++   + +   +P+ +TF ++IS   +      +  +  ++ +    P  + YNA++ 
Sbjct: 481 VNKVLREMKNCGFEPDKDTFNTLISSYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLN 540

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK 175
               + D + A  V+++M+    KP+  ++S L+H C ++   ++  E+++
Sbjct: 541 ALAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLH-CYSKAGNVRGIEKVE 590



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/253 (18%), Positives = 103/253 (40%), Gaps = 37/253 (14%)

Query: 31  LDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL 90
           L+++++M    L     T ++++ AC      +  R+    +  +  KP +  + SM+ +
Sbjct: 272 LELLDEMRSKGLEFDEFTCSTVISACGREGMLDEARKFLAELKLNGYKPGTVMYNSMLQV 331

Query: 91  NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD 150
             K   +  A S+L ++++ N  P +  YN + A Y R   +   + V+  M    V P+
Sbjct: 332 FGKAGIYTEALSILKEMEDNNCPPDSITYNELAATYVRAGFLDEGMAVIDTMTSKGVMPN 391

Query: 151 SQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVL 207
           + T++ +I        E+D ++ + ++K  G     Y +                     
Sbjct: 392 AITYTTVIDAYGKAGREDDALRLFSKMKDLGCAPNVYTY--------------------- 430

Query: 208 DAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
                        +++++ L    RT D I V  E+K  GC         ++   + EG+
Sbjct: 431 -------------NSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGK 477

Query: 268 LNRLIQLLEEVHD 280
            N + ++L E+ +
Sbjct: 478 HNYVNKVLREMKN 490



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/201 (17%), Positives = 89/201 (44%), Gaps = 3/201 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+ A++  ++    +  K +    V+ +M      P  +T N+++ +           ++
Sbjct: 460 PNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISSYARCGSEVDSAKM 519

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           Y  +      P   T+ ++++      D+ +A S++ D++     P  + Y+ ++  Y +
Sbjct: 520 YGEMVKSGFTPCVTTYNALLNALAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHCYSK 579

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITKYV 185
             +V+G   V KE+    V P       L+   H C +   + + ++QL+  G +    V
Sbjct: 580 AGNVRGIEKVEKEIYDGQVFPSWILLRTLVLSNHKCRHLRGMERAFDQLQKYGYKPDLVV 639

Query: 186 FMALINAYTTCGEFEKARQVV 206
             ++++ ++    F KAR+++
Sbjct: 640 INSMLSMFSRNKMFSKAREML 660


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/410 (17%), Positives = 175/410 (42%), Gaps = 12/410 (2%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           + +  +   LI   C L +V  AL  ++Q +     P   T N+ ++   ++       +
Sbjct: 248 SATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALK 307

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +  ++      P+  T+  +++   K    + A  +L+ + +   +P  + +N ++A   
Sbjct: 308 VMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALC 367

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKYYEQLKSAGGQITKY 184
               ++ AL + +++    V PD  TF+ LI+      D    ++ +E++K++G    + 
Sbjct: 368 TGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEV 427

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEI 243
            +  LI+   + G+  KA  ++ D E     RS +  + ++  L    R  +A  V++++
Sbjct: 428 TYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQM 487

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQL 301
              G +        LI+ L  + +++    L+ ++       +      ++ H  +   +
Sbjct: 488 DLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDI 547

Query: 302 SSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSR 361
             A D+L+ +     + ++          C+   T     Q+ L +L+ ++ + G+ P+ 
Sbjct: 548 KKAADILETMTANGFEVDVVTYGTLINGLCKAGRT-----QVALKVLRGMRIK-GMRPTP 601

Query: 362 KCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGN 411
           K  + +L +     +++ A  +++E    G P + L+Y  +++     G 
Sbjct: 602 KAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGG 651



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 93/470 (19%), Positives = 183/470 (38%), Gaps = 73/470 (15%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I   +  Y  L+    +  K+ +   V  +M    + P   T N+++ A   +++     
Sbjct: 142 IQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAV 201

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +    + P+  TF +++   V+    ++A  +   + EM    T    N ++ GY
Sbjct: 202 LMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGY 261

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE------------------DI 167
            +   V+ AL  +++      +PD  T++  ++  C N+                   D+
Sbjct: 262 CKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDV 321

Query: 168 IKY---------YEQLKSAGGQITKYV----------FMALINAYTTCGEFEK----ARQ 204
             Y           QL+ A G + + V          F  LI A  T    E+    ARQ
Sbjct: 322 FTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQ 381

Query: 205 VVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
           V +    P      +   L++AL   G    A+ ++EE+K +GC  +      LI++L S
Sbjct: 382 VTVKGVSPDVYTFNI---LINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCS 438

Query: 265 EGELNRLIQLLEEVHDP---------DYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKF 315
            G+L + + LL+++            +  +DG C+ +       ++  A ++  Q+    
Sbjct: 439 LGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKM-------RIEEAEEVFDQM---- 487

Query: 316 KDDEMAMEYH---FSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACV 372
             D   +  +   F+ +   +      D   GL + Q I +  GL P+    + +L    
Sbjct: 488 --DLQGISRNAITFNTLIDGLCKDKKIDDAFGL-INQMISE--GLQPNNITYNSILTHYC 542

Query: 373 NARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
              D+K+A  I +     G   +V++Y  +      +G  + A K+L  M
Sbjct: 543 KQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGM 592



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 73/155 (47%), Gaps = 2/155 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSIL-HACEESYEFNLV 65
           I+ ++ ++  LI   C   K+  A  ++ QM+   L P+  T NSIL H C++  +    
Sbjct: 492 ISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQG-DIKKA 550

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             I   +  +  + +  T+ ++I+   K      A  +L  ++   + PT   YN ++  
Sbjct: 551 ADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQS 610

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160
            FR+ +++ AL + +EM +    PD+ T+  +   
Sbjct: 611 LFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRG 645


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 87/427 (20%), Positives = 183/427 (42%), Gaps = 18/427 (4%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I PS  +Y  +I Y C    +  +  +  QM +  L P   T NS++    +      V 
Sbjct: 226 IAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVA 285

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +      P+  T+  +I+   K +    A+    ++K   L P    Y+ ++  +
Sbjct: 286 SLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAF 345

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH-NC--SNEEDIIKYYEQLKSAGGQITK 183
            ++  +QGA+ +L +M +  + P+  T++ LI  NC   N  +  K    +  AG ++  
Sbjct: 346 CKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNI 405

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             + AL++     G   +A +V     +  +    +V +ALV       R  DA+ + ++
Sbjct: 406 VTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQ 465

Query: 243 IKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFK- 299
           + E  CN++P  ++  ++I    S+ +L     +LEE+       +      +    FK 
Sbjct: 466 MTE--CNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKA 523

Query: 300 -QLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLP 358
            + S A +  ++++D   +  +       +  C+        V++ +D    +   LGL 
Sbjct: 524 GKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGI-----VELAVDYFCRMLS-LGLQ 577

Query: 359 PSRKCLDFLL-GACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASK 417
           P+      L+ G C N   ++ A  ++ E +  G+  ++ ++  +    L  GN + A  
Sbjct: 578 PNVAVYTSLIDGLCXN-NCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALV 636

Query: 418 LLSKMPK 424
           L+S+M +
Sbjct: 637 LISRMTE 643



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 114/256 (44%), Gaps = 11/256 (4%)

Query: 24  LLKVHVALDVVEQ-------MVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHN 76
           L  V V L ++E+       M     +P   + N +LH   +S    LVR+ +  +    
Sbjct: 166 LFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAG 225

Query: 77  LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGAL 136
           + P+  T+  MI    K  D +++  L   ++EM L P    YN+++ GY +   ++   
Sbjct: 226 IAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVA 285

Query: 137 MVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAY 193
            +  EM+     PD  T++ LI+     E +    +Y+ ++K+ G +     +  LI+A+
Sbjct: 286 SLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAF 345

Query: 194 TTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEP 252
              G  + A +++ D        +E   ++L+ A    G  ++A  +  ++ +AG  L  
Sbjct: 346 CKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNI 405

Query: 253 RAVIALIEHLNSEGEL 268
               AL++ L   G +
Sbjct: 406 VTYTALLDGLCKAGRM 421



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/273 (18%), Positives = 113/273 (41%), Gaps = 8/273 (2%)

Query: 12  ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPM 71
            +Y  L+   C   ++  A +V   M++  + P+ +   +++H   ++       +I   
Sbjct: 406 VTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQ 465

Query: 72  ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131
           +   N+KP+   + S+I  +   +  +    +L+++K   +     +   I+  YF+   
Sbjct: 466 MTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGK 525

Query: 132 VQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMA 188
              AL   +EM+   V+    T+  LI         E  + Y+ ++ S G Q    V+ +
Sbjct: 526 SSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTS 585

Query: 189 LINAYTTCGEFEKARQVVLDAEIPVKSRS---EVKSALVSALASHGRTSDAIIVYEEIKE 245
           LI+        E A++  L  E+  +  +      +AL+     HG   +A+++   + E
Sbjct: 586 LIDGLCXNNCIESAKK--LFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTE 643

Query: 246 AGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
                +     +L+   +  GEL++  +   E+
Sbjct: 644 LAIEFDLHVYTSLVSGFSQCGELHQARKFFNEM 676



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 38/205 (18%), Positives = 84/205 (40%), Gaps = 11/205 (5%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQM----VQGELVPSTETINSILHACEESYEF 62
           I P    Y  +I   C   K+     ++E+M    +    V ST  I++   A + S   
Sbjct: 471 IKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDAL 530

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           N  + +  +     ++    T+  +I    +    + A      +  + L P  ++Y ++
Sbjct: 531 NFFQEMQDV----GVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSL 586

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGG 179
           + G      ++ A  +  EM+   + PD   F+ LI       N ++ +    ++     
Sbjct: 587 IDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAI 646

Query: 180 QITKYVFMALINAYTTCGEFEKARQ 204
           +   +V+ +L++ ++ CGE  +AR+
Sbjct: 647 EFDLHVYTSLVSGFSQCGELHQARK 671


>gi|302767746|ref|XP_002967293.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
 gi|300165284|gb|EFJ31892.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
          Length = 321

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/240 (22%), Positives = 112/240 (46%), Gaps = 7/240 (2%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           + ++P+  +Y  LI   C   K+H AL+++++M      P+  T N+ LH   +  + + 
Sbjct: 74  MGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKVDD 133

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
              ++  +    ++ +   + ++I    +      AYSLLD+++    +P    YNAI++
Sbjct: 134 ALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYNAILS 193

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQI 181
              +   +  A  + K M  + + PD  TF  ++   C     +D +   +Q+KSAG   
Sbjct: 194 WLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAP 253

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
            + ++  LI+A    G   +A +++ +    + SR    ++   AL    +T D+ +V E
Sbjct: 254 REVIYNTLIDALNRAGRVSEAYRLLQE----MISRGLSPNSRTYALMRKQQTDDSNLVVE 309



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 103/246 (41%), Gaps = 18/246 (7%)

Query: 79  PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMV 138
           P   TF  ++    K      A+ L++ + E    P A ++N IM    ++     A   
Sbjct: 8   PTVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGRSAEAYGF 67

Query: 139 LKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQ------ITKYVFMALINA 192
           ++ M    V P   T++ LI     EE + +  E L+   G+      +T   F+  +  
Sbjct: 68  IETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCK 127

Query: 193 YTTCGEFEKARQVVLDAEIPVKSRSEV--KSALVSALASHGRTSDAIIVYEEIKEAGCNL 250
           Y   G+ + A   +  A    K R +V   + L+  L   G+ ++A  + +E++ +GC  
Sbjct: 128 Y---GKVDDA-LALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVP 183

Query: 251 EPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYWMDGCCRLILHCVRFKQLSSATD 306
           +P    A++  L     +N   +L + +      PD+   G   ++    R  ++  A  
Sbjct: 184 KPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFG--MMVFGYCRGHRIDDALL 241

Query: 307 LLKQLK 312
           LL+Q+K
Sbjct: 242 LLQQMK 247


>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
 gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
           [Arabidopsis thaliana]
 gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 138/302 (45%), Gaps = 31/302 (10%)

Query: 16  KLITYSCD-----LLKVHVALDV---VEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           KL   SC      LLK + + DV    ++M++ ++ P+  T N +++A  ++ + N  R 
Sbjct: 185 KLSALSCKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARD 244

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAY---SLLDDLKEMNLMPTASMYNAIMA 124
           +   +  +   PN  ++ ++I    K+      Y   ++L ++ E ++ P  + +N ++ 
Sbjct: 245 VMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILID 304

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQI 181
           G+++  ++ G++ V KEM   +VKP+  +++ LI+   N   I   I   +++ SAG Q 
Sbjct: 305 GFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQP 364

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSA-----LVSALASHGRTSDA 236
               + ALIN +      ++A    LD    VK +  V +      L+ A    G+  D 
Sbjct: 365 NLITYNALINGFCKNDMLKEA----LDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDG 420

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD---PDY-----WMDGC 288
             + EE++  G   +      LI  L   G +    +L +++     PD       M+G 
Sbjct: 421 FALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGLPDLVTFHILMEGY 480

Query: 289 CR 290
           CR
Sbjct: 481 CR 482



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/314 (21%), Positives = 127/314 (40%), Gaps = 44/314 (14%)

Query: 8   TPSSASYKKLITYSCDLL---KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           +P+  SY  LI   C L    K++ A  V+++MV+ ++ P+  T N ++    +      
Sbjct: 255 SPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPG 314

Query: 65  VRRIYPMICHHNLKPNSETFRSMI-----------------------------SLNVKIK 95
             +++  +   ++KPN  ++ S+I                             + N  I 
Sbjct: 315 SMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALIN 374

Query: 96  DF------DSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
            F        A  +   +K    +PT  MYN ++  Y +   +     + +EME+  + P
Sbjct: 375 GFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVP 434

Query: 150 DSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D  T++ LI   C N   E   K ++QL S  G      F  L+  Y   GE  KA  ++
Sbjct: 435 DVGTYNCLIAGLCRNGNIEAAKKLFDQLTSK-GLPDLVTFHILMEGYCRKGESRKAAMLL 493

Query: 207 LD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI-KEAGCNLEPRAVIALIEHLNS 264
            + +++ +K R    + ++      G    A  +  ++ KE    +   +   L++  + 
Sbjct: 494 KEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQ 553

Query: 265 EGELNRLIQLLEEV 278
           +G+L     LL E+
Sbjct: 554 KGKLEDANMLLNEM 567



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 77/163 (47%), Gaps = 5/163 (3%)

Query: 7   ITPSSASYKKLITYSC--DLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           + P+  +Y  LI   C  D+LK   ALD+   +     VP+T   N ++ A  +  + + 
Sbjct: 362 VQPNLITYNALINGFCKNDMLKE--ALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDD 419

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
              +   +    + P+  T+  +I+   +  + ++A  L D L    L P    ++ +M 
Sbjct: 420 GFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILME 478

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI 167
           GY RK + + A M+LKEM +  +KP   T++ ++     E ++
Sbjct: 479 GYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNL 521



 Score = 38.5 bits (88), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 35/183 (19%), Positives = 69/183 (37%), Gaps = 37/183 (20%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
            P++  Y  LI   C L K+     + E+M +  +VP   T N ++     +      ++
Sbjct: 398 VPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKK 457

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMP------------- 114
           ++  +    L P+  TF  ++    +  +   A  LL ++ +M L P             
Sbjct: 458 LFDQLTSKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYC 516

Query: 115 -----------------------TASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151
                                    + YN ++ GY +K  ++ A M+L EM +  + P+ 
Sbjct: 517 KEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNR 576

Query: 152 QTF 154
            T+
Sbjct: 577 ITY 579


>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 794

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 89/434 (20%), Positives = 181/434 (41%), Gaps = 30/434 (6%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P + +Y  L+       +   A++V++QM      PS  T NS++ A            +
Sbjct: 283 PDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVL 342

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    +KP+  T+ +++S  V     + A  + ++++++   P    +NA++  Y  
Sbjct: 343 KRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGD 402

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITKYV 185
           +   +  + V KE++     PD  T++ L+        + ++   +E++K +     +  
Sbjct: 403 RGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDT 462

Query: 186 FMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           F  LI+AY  CG F++A        E  V       +A+++ LA  G    +  V  E+K
Sbjct: 463 FNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMK 522

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQL--- 301
           + GC        +L+    +  E+ R+  L EE++       G  +   H V  K L   
Sbjct: 523 DGGCKPNEVTYSSLLHAYANGREVERMNALAEEIY------SGTIK--THAVLLKTLVLV 574

Query: 302 SSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDP--------PDVQIGLDLLQFIKD 353
           +S  DLL + +  F      +E+    I   + T++           V    ++L F+  
Sbjct: 575 NSKVDLLVETERAF------LEFRKRGISPDVTTSNAMLSIYGRKKMVPKANEILNFMY- 627

Query: 354 ELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRK 413
           E GL  S    + L+       +  ++  I++E  + G+  +V+SY  +  A+  +    
Sbjct: 628 ESGLTLSLTSYNSLMYMYSRTENFHKSEQIFREILDKGIEPDVISYNIVIYAYCRNDMMD 687

Query: 414 SASKLLSKMPKDDP 427
            A +++ +M    P
Sbjct: 688 EAKRIIEEMKVPAP 701



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/258 (22%), Positives = 119/258 (46%), Gaps = 8/258 (3%)

Query: 33  VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92
           +V+ M    L P   T N+++  C     +     ++  I     +P++ T+ +++ +  
Sbjct: 237 LVQDMKCHGLAPDLCTYNTLISCCRAGSLYEEALDLFEEIKVAGFRPDAVTYNALLDVYG 296

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
           K +    A  +L  ++  +  P+   YN++++ Y R   ++ AL++ ++M    +KPD  
Sbjct: 297 KSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVY 356

Query: 153 TFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA 209
           T++ L+    N   EE  ++ +E+++  G +     F ALI  Y   G+FE+  +V  + 
Sbjct: 357 TYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEMVKVFKEI 416

Query: 210 EIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGEL 268
           ++   S   V  + L++    +G  S+   V+EE+K +    E      LI      G  
Sbjct: 417 KVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSF 476

Query: 269 NRLI----QLLEEVHDPD 282
           ++ +    ++LE    PD
Sbjct: 477 DQAMAAYKRMLEAGVSPD 494



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 110/243 (45%), Gaps = 7/243 (2%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY--EFNLVRRIYP 70
            Y  LIT   +  K   AL V  +M +    P+  T N+IL+   +       ++  +  
Sbjct: 181 GYTSLITAYANNKKYRDALKVFGKMKEVGCEPTLITYNAILNVYGKMGMPWAKIIALVQD 240

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
           M C H L P+  T+ ++IS       ++ A  L +++K     P A  YNA++  Y + +
Sbjct: 241 MKC-HGLAPDLCTYNTLISCCRAGSLYEEALDLFEEIKVAGFRPDAVTYNALLDVYGKSR 299

Query: 131 DVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFM 187
             + A+ VLK+ME  + +P   T++ L+         ED +    ++   G +   Y + 
Sbjct: 300 RPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVYTYT 359

Query: 188 ALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA 246
            L++ +   G+ E A +V  +  ++  K      +AL+      G+  + + V++EIK  
Sbjct: 360 TLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEMVKVFKEIKVC 419

Query: 247 GCN 249
            C+
Sbjct: 420 KCS 422



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 74/164 (45%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K+   P+  ++  LI    D  K    + V +++   +  P   T N++L    ++   +
Sbjct: 383 KVGCKPNICTFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDS 442

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
            V  ++  +      P  +TF ++IS   +   FD A +    + E  + P  S YNA++
Sbjct: 443 EVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVL 502

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI 167
           A   R    + +  VL EM+    KP+  T+S L+H  +N  ++
Sbjct: 503 ATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANGREV 546



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 81/374 (21%), Positives = 156/374 (41%), Gaps = 46/374 (12%)

Query: 75  HNLKPNS-----ETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
           HNL+ +        + S+I+     K +  A  +   +KE+   PT   YNAI+  Y + 
Sbjct: 168 HNLEADGFEVDVYGYTSLITAYANNKKYRDALKVFGKMKEVGCEPTLITYNAILNVYGKM 227

Query: 130 KDVQGALMVL-KEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKYV 185
                 ++ L ++M+   + PD  T++ LI  C   S  E+ +  +E++K AG +     
Sbjct: 228 GMPWAKIIALVQDMKCHGLAPDLCTYNTLISCCRAGSLYEEALDLFEEIKVAGFRPDAVT 287

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIK 244
           + AL++ Y      ++A +V+   E      S V  ++LVSA    G   DA+++  ++ 
Sbjct: 288 YNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMV 347

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSA 304
           + G   +      L+    + G+    +++ EE+        GC            + + 
Sbjct: 348 DKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKV-----GCK---------PNICTF 393

Query: 305 TDLLKQLKDKFKDDEMAMEYHFSEI-FCQIATTDPPDV-----------QIGLDL-LQFI 351
             L+K   D+ K +EM     F EI  C+ +    PD+           Q G+D  +  +
Sbjct: 394 NALIKMYGDRGKFEEMVKV--FKEIKVCKCS----PDIVTWNTLLAVFGQNGMDSEVSGV 447

Query: 352 KDELG---LPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLA 408
            +E+      P R   + L+ A        +A   +K    AG+  ++ +Y  +      
Sbjct: 448 FEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLAR 507

Query: 409 SGNRKSASKLLSKM 422
            G  + + K+L++M
Sbjct: 508 GGLWEQSEKVLAEM 521


>gi|399216092|emb|CCF72780.1| unnamed protein product [Babesia microti strain RI]
          Length = 1520

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/244 (21%), Positives = 118/244 (48%), Gaps = 16/244 (6%)

Query: 18   ITYSC--DLLKVHVALDVVEQMVQ-----GELVPSTETINSILHACEESYEFNLVRRIYP 70
            +TY C  D L  +  LD    +++       + P+T   ++++    ++ + N    IY 
Sbjct: 979  VTYGCMFDALVSNNMLDEALSLLKDMKKNSNIKPNTIIYSTLIKGFGQTKQLNKALNIYL 1038

Query: 71   MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
             +    + PN+ T+ S+I    ++ D + A +LL+D+   N+ P    ++ ++ GY  + 
Sbjct: 1039 TMLDEGVVPNTITYNSIIDACARVGDMNKAANLLEDMLNNNIEPDLITFSTVIKGYCVQS 1098

Query: 131  DVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKYYEQLKSAGGQITKYVFM 187
            ++  +L +L+ M +  +KPD   ++ L+  C          + +++++  G   + +   
Sbjct: 1099 NMDRSLQLLRAMSERGIKPDGILYNSLLDGCVKSGRPWLCQQLWDEMQENGIAPSNFTLT 1158

Query: 188  ALINAYTTCGEFEKARQVVLDAEIP----VKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
             LI  Y   G+ +KA Q++   E+P    +++ + V + L+SA  ++G+   A+ V+  +
Sbjct: 1159 ILIKMYGRLGQLDKAFQLM--DELPRKYNIQTNTHVYTCLMSACITNGKYKMALDVFNCM 1216

Query: 244  KEAG 247
               G
Sbjct: 1217 NGNG 1220



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 95/209 (45%), Gaps = 4/209 (1%)

Query: 1    MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
            M     I P++  Y  LI       +++ AL++   M+   +VP+T T NSI+ AC    
Sbjct: 1004 MKKNSNIKPNTIIYSTLIKGFGQTKQLNKALNIYLTMLDEGVVPNTITYNSIIDACARVG 1063

Query: 61   EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
            + N    +   + ++N++P+  TF ++I       + D +  LL  + E  + P   +YN
Sbjct: 1064 DMNKAANLLEDMLNNNIEPDLITFSTVIKGYCVQSNMDRSLQLLRAMSERGIKPDGILYN 1123

Query: 121  AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQL----KS 176
            +++ G  +         +  EM++  + P + T + LI        + K ++ +    + 
Sbjct: 1124 SLLDGCVKSGRPWLCQQLWDEMQENGIAPSNFTLTILIKMYGRLGQLDKAFQLMDELPRK 1183

Query: 177  AGGQITKYVFMALINAYTTCGEFEKARQV 205
               Q   +V+  L++A  T G+++ A  V
Sbjct: 1184 YNIQTNTHVYTCLMSACITNGKYKMALDV 1212



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 95/200 (47%), Gaps = 9/200 (4%)

Query: 84   FRSMISLNVKIKDFDSAYSLLDDLKE-MNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM 142
            F +++S N+     D A SLL D+K+  N+ P   +Y+ ++ G+ + K +  AL +   M
Sbjct: 985  FDALVSNNM----LDEALSLLKDMKKNSNIKPNTIIYSTLIKGFGQTKQLNKALNIYLTM 1040

Query: 143  EQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEF 199
                V P++ T++ +I  C+   D+ K     E + +   +     F  +I  Y      
Sbjct: 1041 LDEGVVPNTITYNSIIDACARVGDMNKAANLLEDMLNNNIEPDLITFSTVIKGYCVQSNM 1100

Query: 200  EKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
            +++ Q++   +E  +K    + ++L+      GR      +++E++E G       +  L
Sbjct: 1101 DRSLQLLRAMSERGIKPDGILYNSLLDGCVKSGRPWLCQQLWDEMQENGIAPSNFTLTIL 1160

Query: 259  IEHLNSEGELNRLIQLLEEV 278
            I+     G+L++  QL++E+
Sbjct: 1161 IKMYGRLGQLDKAFQLMDEL 1180


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/410 (17%), Positives = 176/410 (42%), Gaps = 12/410 (2%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           + +  +   LI   C L +V  AL  ++Q +     P   T N+ ++   ++       +
Sbjct: 156 SATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALK 215

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +  ++      P+  T+  +++   K    + A  +L+ + +   +P  + +N ++A   
Sbjct: 216 VMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALC 275

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKYYEQLKSAGGQITKY 184
               ++ AL + +++    V PD  TF+ LI+      D    ++ +E++K++G    + 
Sbjct: 276 TGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEV 335

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEI 243
            +  LI+   + G+  KA  ++ D E     RS +  + ++  L    R  +A  V++++
Sbjct: 336 TYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQM 395

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQL 301
              G +        LI+ L  + +++   +L+ ++       +      ++ H  +   +
Sbjct: 396 DLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDI 455

Query: 302 SSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSR 361
             A D+L+ +     + ++          C+   T     Q+ L +L+ ++ + G+ P+ 
Sbjct: 456 KKAADILETMTANGFEVDVVTYGTLINGLCKAGRT-----QVALKVLRGMRIK-GMRPTP 509

Query: 362 KCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGN 411
           K  + +L +     +++ A  +++E    G P + L+Y  +++     G 
Sbjct: 510 KAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGG 559



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 90/469 (19%), Positives = 178/469 (37%), Gaps = 71/469 (15%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I   +  Y  L+    +  K+ +   V  +M    + P   T N+++ A   +++     
Sbjct: 50  IQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAV 109

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +    + P+  TF +++   V+    ++A  +   + EM    T    N ++ GY
Sbjct: 110 LMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGY 169

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE------------------DI 167
            +   V+ AL  +++      +PD  T++  ++  C N+                   D+
Sbjct: 170 CKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDV 229

Query: 168 IKY---------YEQLKSAGGQITKYV----------FMALINAYTTCGEFEK----ARQ 204
             Y           QL+ A G + + V          F  LI A  T    E+    ARQ
Sbjct: 230 FTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQ 289

Query: 205 VVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
           V +    P      +   L++AL   G    A+ ++EE+K +GC  +      LI++L S
Sbjct: 290 VTVKGVSPDVYTFNI---LINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCS 346

Query: 265 EGELNRLIQLLEEVHDP---------DYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKF 315
            G+L + + LL+++            +  +DG C+ +       ++  A ++  Q+  + 
Sbjct: 347 LGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKM-------RIEEAEEVFDQMDLQG 399

Query: 316 KDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDEL--GLPPSRKCLDFLLGACVN 373
                       +  C+    D        D  + I   +  GL P+    + +L     
Sbjct: 400 ISRNAITFNTLIDGLCKDKKID--------DAFELINQMISEGLQPNNITYNSILTHYCK 451

Query: 374 ARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
             D+K+A  I +     G   +V++Y  +      +G  + A K+L  M
Sbjct: 452 QGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGM 500



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 73/149 (48%), Gaps = 2/149 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSIL-HACEESYEFNLV 65
           I+ ++ ++  LI   C   K+  A +++ QM+   L P+  T NSIL H C++  +    
Sbjct: 400 ISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQG-DIKKA 458

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             I   +  +  + +  T+ ++I+   K      A  +L  ++   + PT   YN ++  
Sbjct: 459 ADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQS 518

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTF 154
            FR+ +++ AL + +EM +    PD+ T+
Sbjct: 519 LFRRNNIRDALSLFREMAEVGEPPDALTY 547


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 92/432 (21%), Positives = 165/432 (38%), Gaps = 32/432 (7%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P   ++  L+   C   +V  A+ ++E+M    + P   T  +++    E        
Sbjct: 181 IKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAAL 240

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R+   +      P   T   +I+   K+   + A   +         P    YN  + G 
Sbjct: 241 RVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGL 300

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITK 183
            +   V  AL V+  M Q    PD  T++ +++  C N   E+      Q+   G     
Sbjct: 301 CQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDI 360

Query: 184 YVFMALINAYTTCGEFEK----ARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
             F  LI A  +    E+    ARQV L    P      +   L++AL   G    A+ +
Sbjct: 361 TTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNI---LINALCKVGDPQLALRL 417

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDP---------DYWMDGCCR 290
           +EE+K +GC  +      LI++L S G+L + + LL+E+            +  +DG C+
Sbjct: 418 FEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCK 477

Query: 291 LILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQF 350
            +       ++  A ++  Q+  +             +  C+    D  +  I     Q 
Sbjct: 478 KM-------RIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLIS----QM 526

Query: 351 IKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASG 410
           I +  GL P+    + +L       D+K+A  I +     G   +V++Y  +      +G
Sbjct: 527 ISE--GLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAG 584

Query: 411 NRKSASKLLSKM 422
             + A KLL  M
Sbjct: 585 RTQVALKLLRGM 596



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 74/412 (17%), Positives = 175/412 (42%), Gaps = 16/412 (3%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           +P+  +   LI   C L +V  AL  ++Q +     P   T N+ ++   ++       +
Sbjct: 252 SPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALK 311

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +  ++      P+  T+  +++   K    + A  +L+ + E   +P  + +N ++    
Sbjct: 312 VMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALC 371

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKYYEQLKSAGGQITKY 184
               ++ AL + +++    + PD  TF+ LI+      D    ++ +E++KS+G    + 
Sbjct: 372 SGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEV 431

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEI 243
            +  LI+   + G+  KA  ++ + E     RS V  + ++  L    R  +A  V++++
Sbjct: 432 TYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQM 491

Query: 244 KEAGCNLEPRAVIALIEHLNSEGEL---NRLI-QLLEEVHDPDYWMDGCCRLILHCVRFK 299
              G +        LI+ L  +  +   N+LI Q++ E   P+        ++ H  +  
Sbjct: 492 DLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYN--SILTHYCKQG 549

Query: 300 QLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPP 359
            +  A D+L+ +     + ++          C+   T     Q+ L LL+ ++ + G+  
Sbjct: 550 DIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRT-----QVALKLLRGMRIK-GMRA 603

Query: 360 SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGN 411
           + K  + ++ +     + + A  +++E    G P +  +Y  +++     G 
Sbjct: 604 TPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRGLCRGGG 655



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 69/359 (19%), Positives = 139/359 (38%), Gaps = 45/359 (12%)

Query: 46  TETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLD 105
           T   N +L+   E  +  L+  +Y  +    +KP+  TF +++    +     +A  +L+
Sbjct: 150 TVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLE 209

Query: 106 DLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CS 162
           ++    + P  + +  +M G+  +  ++ AL V   M +    P   T + LI+      
Sbjct: 210 EMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLG 269

Query: 163 NEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS- 221
             ED + Y +Q  + G +  +  +   +N     G    A + V+D  +      +V + 
Sbjct: 270 RVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALK-VMDVMVQEGHDPDVFTY 328

Query: 222 -ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
             +V+ L  +G+  +A  +  ++ E GC       +  I   N+                
Sbjct: 329 NIVVNCLCKNGQLEEAKGILNQMVERGC-------LPDITTFNT---------------- 365

Query: 281 PDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPD 340
                     LI+      +L  A DL +Q+  K    ++          C++      D
Sbjct: 366 ----------LIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVG-----D 410

Query: 341 VQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSY 399
            Q+ L L + +K   G  P     + L+    +   L +A  + KE E+AG P + ++Y
Sbjct: 411 PQLALRLFEEMKSS-GCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTY 468


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 94/440 (21%), Positives = 178/440 (40%), Gaps = 22/440 (5%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P++ SY  +I       +   A++V ++M +  ++P+  T N+++    +  +     R+
Sbjct: 198 PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 257

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +  H LKPN+ T+  ++S   +        +LLD++    ++P    Y+ +  G  R
Sbjct: 258 RDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSR 317

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKS---AGGQITKYV 185
             D +  L +  +  +  V     T S L++    +  +    E L+S   AG   T+ +
Sbjct: 318 NGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVI 377

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +  LIN Y   GE E A       +   +K      +AL++ L    R ++A  +  E++
Sbjct: 378 YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQ 437

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYWMDGCCRLILHCVRFKQ 300
           + G N        LI+     G+L +   +L E+ +    P+    G    I++   F +
Sbjct: 438 DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGS---IVNA--FCK 492

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS 360
                + +  L D F  D +     ++ I        P D      L++ +K   G+ PS
Sbjct: 493 NGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQ--AFILVEKMKSN-GISPS 549

Query: 361 RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420
               + L+    N   +  A  I     N  L  + +SY  +  A    GN   A  L  
Sbjct: 550 IVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQ 609

Query: 421 KMPKDDPHVRFVIQACKQTY 440
           +M K      + I++  +TY
Sbjct: 610 RMHK------YGIKSTVRTY 623



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/152 (19%), Positives = 69/152 (45%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  SY  ++   C   K+  A+ +++ M   +++P+ +  N+I+ A  E    +   
Sbjct: 476 LKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAF 535

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +  + + P+  T+  +I           A  +++ L    L+P A  YN +++  
Sbjct: 536 ILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISAC 595

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
             + ++  AL + + M +  +K   +T+  LI
Sbjct: 596 CYRGNIDKALDLQQRMHKYGIKSTVRTYHQLI 627


>gi|356497651|ref|XP_003517673.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 827

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 116/262 (44%), Gaps = 18/262 (6%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           ALDV        L P   T N +L    E+     VRR++  +      PN  T+  M++
Sbjct: 266 ALDVFSNAKHVGLEPDIRTCNFLLKCLVEANRVEFVRRVFEELKDRGPSPNIYTYTIMMN 325

Query: 90  LNVKIKDFDS----AYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
                   D+    A  +L  +      PT   Y+  + G  +  +V+ ALM+++ +   
Sbjct: 326 FYCSDVGCDAGMRQAAVILGKIYRSGEKPTVVTYSTYIHGLCKVGNVEAALMLIRNLHYT 385

Query: 146 NVKPDSQTFSYLIHN-CSNEE--DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
           N   +S +F+ +I+  C   E  + ++  E++KS+G     Y +  LINA+   G+  K 
Sbjct: 386 NQPLNSHSFNDVIYGFCKRGEVFEALQVLEEMKSSGILPDVYSYSILINAFCGKGDVMKC 445

Query: 203 RQVVLDAEIPVKSRSEVKSALVS------ALASHGRTSDAIIVYEEIKEAGCNLEPRAVI 256
             ++ + E      S++K ++VS       L       +A+ ++  I  + C  +     
Sbjct: 446 LDLMEEME-----HSQIKPSIVSYTSLIHGLCKKNMLQNAVDIFHSIGASSCKYDSTVYE 500

Query: 257 ALIEHLNSEGELNRLIQLLEEV 278
            LI+    +G+++  I+LLEE+
Sbjct: 501 TLIDGFCMQGDMDSAIKLLEEM 522



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 122/290 (42%), Gaps = 16/290 (5%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           I P   SY  LI   C    V   LD++E+M   ++ PS  +  S++H  C+++   N V
Sbjct: 422 ILPDVYSYSILINAFCGKGDVMKCLDLMEEMEHSQIKPSIVSYTSLIHGLCKKNMLQNAV 481

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             I+  I   + K +S  + ++I       D DSA  LL+++    L+PTA    +++ G
Sbjct: 482 D-IFHSIGASSCKYDSTVYETLIDGFCMQGDMDSAIKLLEEMICNELVPTAFSCRSLIRG 540

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQIT 182
           Y++      AL V   M +  + PD+   +Y++         ++ +   E  +  G  + 
Sbjct: 541 YYKLGLFDQALEVFNAMLRDGIWPDTIACNYILDGSCRAGYFKEALTLLEDFQEHGFNLN 600

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEV------KSALVSALASHGRTSDA 236
            + + A+I  Y  C E    R + L   +P   +  V       S L+S  A       A
Sbjct: 601 PHSYNAII--YKLCKEGYPERALEL---LPRMLKRNVLPSVVNYSTLISGFAKQSNFKRA 655

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
           + ++  + + G          L+   +   +++    + +E+ +    +D
Sbjct: 656 VNLFTRMVKVGITFNIATYTILMSIFSHSHKMHEAYGIFKEMKERGLCLD 705



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 54/268 (20%), Positives = 110/268 (41%), Gaps = 31/268 (11%)

Query: 11  SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYP 70
           S  Y+ LI   C    +  A+ ++E+M+  ELVP+  +  S++    +   F+    ++ 
Sbjct: 496 STVYETLIDGFCMQGDMDSAIKLLEEMICNELVPTAFSCRSLIRGYYKLGLFDQALEVFN 555

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
            +    + P++     ++  + +   F  A +LL+D +E         YNAI+    ++ 
Sbjct: 556 AMLRDGIWPDTIACNYILDGSCRAGYFKEALTLLEDFQEHGFNLNPHSYNAIIYKLCKEG 615

Query: 131 DVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALI 190
             + AL +L  M + NV P    +S LI   + + +                   F   +
Sbjct: 616 YPERALELLPRMLKRNVLPSVVNYSTLISGFAKQSN-------------------FKRAV 656

Query: 191 NAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNL 250
           N +T        R V    ++ +       + L+S  +   +  +A  +++E+KE G  L
Sbjct: 657 NLFT--------RMV----KVGITFNIATYTILMSIFSHSHKMHEAYGIFKEMKERGLCL 704

Query: 251 EPRAVIALIEHLNSEGELNRLIQLLEEV 278
           +  +   LI    +  E+ +   L EE+
Sbjct: 705 DQISYTTLIVGFCNNREMKKAWALFEEM 732



 Score = 45.8 bits (107), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 38/196 (19%), Positives = 86/196 (43%), Gaps = 3/196 (1%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           SY  +I   C       AL+++ +M++  ++PS    ++++    +   F     ++  +
Sbjct: 603 SYNAIIYKLCKEGYPERALELLPRMLKRNVLPSVVNYSTLISGFAKQSNFKRAVNLFTRM 662

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               +  N  T+  ++S+         AY +  ++KE  L      Y  ++ G+   +++
Sbjct: 663 VKVGITFNIATYTILMSIFSHSHKMHEAYGIFKEMKERGLCLDQISYTTLIVGFCNNREM 722

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHN-C-SNEEDIIKYYEQLKSAGGQITKYV-FMAL 189
           + A  + +EM +    P+  T++ +I   C SN  D+  +     +    I   V +  L
Sbjct: 723 KKAWALFEEMSREGCSPNVITYTCIIDGFCKSNRIDLATWVFDKMNRDSVIPDVVTYTVL 782

Query: 190 INAYTTCGEFEKARQV 205
           I+ Y   G F++A ++
Sbjct: 783 IDWYHKHGYFDQAHKL 798


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 138/314 (43%), Gaps = 8/314 (2%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVR 66
           +P   +Y  L+   C   KV  A +V+ +M+    VP+  T NS+LH  C      + + 
Sbjct: 223 SPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALA 282

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +  M C     PN  T+ ++I    K+     A ++L D+ +    P   +YN ++ G 
Sbjct: 283 LMRDMTC-RGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGL 341

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-C-SNEED-IIKYYEQLKSAGGQITK 183
            +   V  ++ +L+      +KPD  T+S +I+  C SN  D   +    +KS G     
Sbjct: 342 CKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDV 401

Query: 184 YVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
            ++  LI+     G+ ++A  +  + A     +     S L+  L   GR  +A ++   
Sbjct: 402 ILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLAR 461

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC-RLILHCV-RFKQ 300
           +   G         +LI+ L     L+  I+L+EE+   +         +++H + R ++
Sbjct: 462 MVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMER 521

Query: 301 LSSATDLLKQLKDK 314
           + SA  LL+Q K +
Sbjct: 522 VDSAVVLLEQAKAR 535



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 77/369 (20%), Positives = 146/369 (39%), Gaps = 31/369 (8%)

Query: 75  HNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQG 134
           H  +PN  T+ S+I    K  + D A  L + +K +   P+   YN ++ G FR   ++ 
Sbjct: 108 HGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLER 167

Query: 135 ALMVLKEM-------EQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKY 184
           A+ + +EM             P+  T+S LI        +   ++  E +K+ G      
Sbjct: 168 AMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVI 227

Query: 185 VFMALINAYTTCGEFEKARQVV---LDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVY 240
            +  L++      +   A +V+   LDA  +P        ++L+  L    R SDA+ + 
Sbjct: 228 TYTILVDGLCKESKVAAAWEVLREMLDAGCVP---NLVTYNSLLHGLCRARRVSDALALM 284

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYWMDGCCRLILHCV 296
            ++   GC         LI+ L   G +     +L ++ D    PD  +     LI    
Sbjct: 285 RDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYN--MLINGLC 342

Query: 297 RFKQLSSATDLLKQ-LKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDEL 355
           +  Q+  +  LL++ +    K D +     +S +   +  ++  D      LL ++K   
Sbjct: 343 KADQVDESIALLRRAVSGGIKPDVVT----YSSVIYGLCRSNRLDE--ACRLLLYVKSR- 395

Query: 356 GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSA 415
           G PP       L+     A  +  A  +++     G   +V++Y  +      +G    A
Sbjct: 396 GCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEA 455

Query: 416 SKLLSKMPK 424
             LL++M +
Sbjct: 456 HLLLARMVR 464



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 48/238 (20%), Positives = 91/238 (38%), Gaps = 43/238 (18%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           TP    Y  LI   C   +V  ++ ++ + V G + P   T +S+++    S   +   R
Sbjct: 328 TPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACR 387

Query: 68  I-----------------------------------YPMICHHNLKPNSETFRSMISLNV 92
           +                                   Y ++       +  T+ ++I    
Sbjct: 388 LLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLC 447

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
           K    D A+ LL  +  M   P+   YN+++ G      +  A+ +++EME++N  P + 
Sbjct: 448 KAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAV 507

Query: 153 TFSYLIHNCSNEEDI---IKYYEQLK----SAGGQ-ITKYVFMALINAYTTCGEFEKA 202
           T++ LIH     E +   +   EQ K    +AGG  +    + +LI+     G   +A
Sbjct: 508 TYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEA 565



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 7/161 (4%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVRRIYPM 71
           +Y  LI   C   +V  A  ++ +MV+    PST T NS++   C+ ++    +  +  M
Sbjct: 438 TYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEM 497

Query: 72  ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM-----YNAIMAGY 126
               N  P++ T+  +I    +++  DSA  LL+  K   +    +      Y++++ G 
Sbjct: 498 E-RSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGL 556

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI 167
            +   V  AL   +EM    V PD  T+S L+      +D+
Sbjct: 557 CKAGRVAEALDYFQEMIDNGVIPDHITYSILLEGLKKSKDL 597


>gi|242047668|ref|XP_002461580.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
 gi|241924957|gb|EER98101.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
          Length = 532

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/292 (21%), Positives = 132/292 (45%), Gaps = 16/292 (5%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQG--ELVPSTETINSILHACEESYE 61
           KL  TP   SY  L+   CD  K   A+D++  M +      P+  +  +++H     ++
Sbjct: 77  KLGCTPDVFSYTVLLKGLCDEKKCEEAVDLIHMMAEDGDHCPPNVVSYTTVIHG---FFK 133

Query: 62  FNLVRRIYPMICH---HNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM 118
            + V + Y + C      + P+  T  S+I    K++  D A  +L  + + ++MP  + 
Sbjct: 134 EDEVGKAYTLFCEMLDRGIPPDVVTCNSIIDGLCKVQAMDKAEEVLRQMFDKHIMPDCTT 193

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKS-- 176
           YN+++ GY     ++ A+ +LK+M +    P+  T+S LI          +  E L S  
Sbjct: 194 YNSLVHGYLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCLCKFGGHTEAREILNSMI 253

Query: 177 -AGGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTS 234
            + G      +  L++ Y T G+  +   ++ L  +  V+    + +  + A    GR  
Sbjct: 254 QSRGNPNVATYGGLLHGYATKGDLVEMNNLIDLMVQNGVRPDHHIFNIQIYAYVKCGRLD 313

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN----RLIQLLEEVHDPD 282
           +A++ + ++++ G   +  +   +I+ L   G L+    +  Q++++   PD
Sbjct: 314 EAMLTFNKMRQQGLMPDIISYGTMIDGLCKIGRLDAAMSQFCQMIDDGLSPD 365



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/279 (20%), Positives = 114/279 (40%), Gaps = 14/279 (5%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P   +   +I   C +  +  A +V+ QM    ++P   T NS++H    S +     
Sbjct: 152 IPPDVVTCNSIIDGLCKVQAMDKAEEVLRQMFDKHIMPDCTTYNSLVHGYLSSGQLKEAV 211

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           RI   +  H   PN  T+  +I    K      A  +L+ + +    P  + Y  ++ GY
Sbjct: 212 RILKQMSRHGQPPNGVTYSMLIDCLCKFGGHTEAREILNSMIQSRGNPNVATYGGLLHGY 271

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITK 183
             K D+     ++  M Q  V+PD   F+  I+    C   ++ +  + +++  G     
Sbjct: 272 ATKGDLVEMNNLIDLMVQNGVRPDHHIFNIQIYAYVKCGRLDEAMLTFNKMRQQGLMPDI 331

Query: 184 YVFMALINAYTTCGEFEKAR----QVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
             +  +I+     G  + A     Q++ D   P      V + L+   + +G+   A  +
Sbjct: 332 ISYGTMIDGLCKIGRLDAAMSQFCQMIDDGLSP---DIVVFTNLIHGFSMYGKWEKAEEL 388

Query: 240 YEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLE 276
           + E+ + G  + P  V+   +I+ L  EG++     L +
Sbjct: 389 FYEMMDRG--IRPTVVVFTTMIDKLFKEGKVTEAKTLFD 425



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 67/154 (43%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   SY  +I   C + ++  A+    QM+   L P      +++H      ++    
Sbjct: 327 LMPDIISYGTMIDGLCKIGRLDAAMSQFCQMIDDGLSPDIVVFTNLIHGFSMYGKWEKAE 386

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +    ++P    F +MI    K      A +L D +   ++ P    YNAI+ GY
Sbjct: 387 ELFYEMMDRGIRPTVVVFTTMIDKLFKEGKVTEAKTLFDLMPIASVKPNVVSYNAIIHGY 446

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160
           F    +   L +L +M    +KP++ TF+ L+ +
Sbjct: 447 FLAGKLDEVLKLLDDMLSVGLKPNAVTFNTLLDD 480


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 111/243 (45%), Gaps = 16/243 (6%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL++  QM + ++ P    + S+L+A     +    R I+  +    L+   +   S+ +
Sbjct: 206 ALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNT 265

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K     +A  L D +K  NL+    ++NA+++GY +    + A+ +  EM   +V+P
Sbjct: 266 MYAKCGQVATAKILFDKMKSPNLI----LWNAMISGYAKNGYAREAIDMFHEMINKDVRP 321

Query: 150 DSQTFSYLIHNCS---NEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV- 205
           D+ + +  I  C+   + E     YE +  +  +   ++  ALI+ +  CG  E AR V 
Sbjct: 322 DTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVF 381

Query: 206 --VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
              LD ++       V SA++     HGR  +AI +Y  ++  G +      + L+   N
Sbjct: 382 DRTLDRDVV------VWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACN 435

Query: 264 SEG 266
             G
Sbjct: 436 HSG 438



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 87/182 (47%), Gaps = 13/182 (7%)

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           +I  +    D   A  + DDL    + P    +NAI+ GY R    Q AL++   M+ A 
Sbjct: 59  LIHASSSFGDITFARQVFDDLPRPQIFP----WNAIIRGYSRNNHFQDALLMYSNMQLAR 114

Query: 147 VKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203
           V PDS TF +L+  CS    +      + Q+   G     +V   LI  Y  C     AR
Sbjct: 115 VSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSAR 174

Query: 204 QVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
            V     +P+  R+ V  +A+VSA A +G   +A+ ++ ++++   +++P  V AL+  L
Sbjct: 175 TVF--EGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKM--DVKPDWV-ALVSVL 229

Query: 263 NS 264
           N+
Sbjct: 230 NA 231


>gi|297848576|ref|XP_002892169.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338011|gb|EFH68428.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 662

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 115/269 (42%), Gaps = 10/269 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P   +Y  +I   C   +   AL+ +  M    L     T  +++ AC    +F+   
Sbjct: 253 IKPDVVTYNTMIKGYCKAGQTQKALEKLRVMETKGLEADKITYMTMIQACYADSDFSSCV 312

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +Y  +    L+     F  +I    K    +  Y++ +++      P  ++Y  ++ GY
Sbjct: 313 ALYQEMDEKGLQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGY 372

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITK 183
            +   V+ A+ +L  M      PD  T+S +++  C N   E+ + Y++  +  G  I  
Sbjct: 373 AKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAINS 432

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             + +LI+     G  ++A ++  + +E      S   +AL+ A   HG+  +A+ +++ 
Sbjct: 433 MFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEALALFKR 492

Query: 243 I-KEAGCNLEPRAVIALI-----EHLNSE 265
           + +E GC+        LI     EH N E
Sbjct: 493 MEEEEGCDQTVYTYTILISGMFKEHRNEE 521



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 82/399 (20%), Positives = 161/399 (40%), Gaps = 19/399 (4%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K E   + +    LI     L  V   L V  +M +  + P+  T N +++    +   +
Sbjct: 180 KFEFPMTVSPGNSLIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVD 239

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              R++ ++    +KP+  T+ +MI    K      A   L  ++   L      Y  ++
Sbjct: 240 SAERVFEVMESGRIKPDVVTYNTMIKGYCKAGQTQKALEKLRVMETKGLEADKITYMTMI 299

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY---EQLKSAGGQ 180
              +   D    + + +EM++  ++     FS +I     E  + + Y   E +   G +
Sbjct: 300 QACYADSDFSSCVALYQEMDEKGLQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSK 359

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEV--KSALVSALASHGRTSDAII 238
               ++  LI+ Y   G  E A + +L   I      +V   S +V+ L  +GR  +A+ 
Sbjct: 360 PNVAIYTVLIDGYAKTGSVEDAIR-LLHRMIDEGFNPDVVTYSVVVNGLCKNGRVEEAMD 418

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCV 296
            ++  +  G  +      +LI+ L   G ++   +L EE+ +     D  C   LI    
Sbjct: 419 YFQTCRFNGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFT 478

Query: 297 RFKQLSSATDLLKQLKDKFKDDEMAMEYH--FSEIFCQIATTDPPDVQIGLDLLQFIKDE 354
           +  ++  A  L K+++++   D+    Y    S +F +    +       L L   + D+
Sbjct: 479 KHGKVDEALALFKRMEEEEGCDQTVYTYTILISGMFKEHRNEE------ALKLWDMMIDK 532

Query: 355 LGLPPSRKCLDFL-LGACVNARDLKRAHLIWKEYENAGL 392
            G+ P+  CL  L  G C++ + + RA  I  E    G+
Sbjct: 533 -GITPTAACLRALSTGLCLSGK-VARACKILDELAPMGV 569


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 76/404 (18%), Positives = 175/404 (43%), Gaps = 16/404 (3%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS 86
           V +A ++ +++V+  +  +  T+N +++A  ++ +    +     +    + P+  T+ +
Sbjct: 339 VDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNT 398

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           +I+   +    + A+ L+D +    L P    YNAI+ G  +      A  VL EM +  
Sbjct: 399 LINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIG 458

Query: 147 VKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203
           + PD+ T++ L+  C   ++++   + ++++ S G       F ALI   +  G  ++A 
Sbjct: 459 MSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQAL 518

Query: 204 QVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
           +   D +   +   + + + L+     +G  S+A+ V +E+ E GC L+      ++  L
Sbjct: 519 KYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGL 578

Query: 263 NSEGELNRLIQLLEEVHD----PDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDD 318
             E  L+   +L  E+ +    PD++      LI    +   ++ A  L + +  +    
Sbjct: 579 CKEKMLSEADELFTEMTERGVFPDFYT--FTTLINGYXKDGNMNKAVTLFEMMIQRNLKP 636

Query: 319 EMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLK 378
           ++       + FC+ +  +  + ++  D++        + P+      L+    N   + 
Sbjct: 637 DVVTYNTLIDGFCKGSEMEKVN-ELWNDMIS-----RRIYPNHISYGILINGYCNMGCVS 690

Query: 379 RAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
            A  +W E    G    +++   + K +  +GN   A + LS M
Sbjct: 691 EAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNM 734



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 86/432 (19%), Positives = 167/432 (38%), Gaps = 67/432 (15%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  +I   C   K   A  V+++M++  + P T T N +L  C  +       
Sbjct: 424 LKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAE 483

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           RI+  +    + P+  +F ++I L  K    D A     D+K   L P   +Y  ++ G+
Sbjct: 484 RIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGF 543

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQITK 183
            R   +  AL V  EM +     D  T++ +++    E+   +  + + ++   G     
Sbjct: 544 CRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDF 603

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
           Y F  LIN Y   G   K                                  A+ ++E +
Sbjct: 604 YTFTTLINGYXKDGNMNK----------------------------------AVTLFEMM 629

Query: 244 KEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHD----PDY-----WMDGCCRLI 292
            +   NL+P  V    LI+      E+ ++ +L  ++      P++      ++G C   
Sbjct: 630 IQR--NLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCN-- 685

Query: 293 LHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIK 352
           + CV     S A  L  ++ +K  +  +       + +C+       D        +F+ 
Sbjct: 686 MGCV-----SEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKAD--------EFLS 732

Query: 353 DEL--GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASG 410
           + L  G+ P     + L+   +   ++ RA  +  + EN+GL  +V++Y  +   F   G
Sbjct: 733 NMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQG 792

Query: 411 NRKSASKLLSKM 422
             + A  ++ KM
Sbjct: 793 RMQEAELIMLKM 804



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 79/154 (51%), Gaps = 2/154 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           I P+  SY  LI   C++  V  A  + ++MV+     +  T N+I+   C         
Sbjct: 669 IYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKAD 728

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +  M+    + P+  T+ ++I+  +K ++ D A++L++ ++   L+P    YN I+ G
Sbjct: 729 EFLSNMLLK-GIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNG 787

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159
           + R+  +Q A +++ +M +  V PD  T++ LI+
Sbjct: 788 FSRQGRMQEAELIMLKMIERGVNPDRSTYTSLIN 821



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/245 (19%), Positives = 106/245 (43%), Gaps = 4/245 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   ++  LI        ++ A+ + E M+Q  L P   T N+++    +  E   V 
Sbjct: 599 VFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVN 658

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +    + PN  ++  +I+    +     A+ L D++ E     T    N I+ GY
Sbjct: 659 ELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGY 718

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY---EQLKSAGGQITK 183
            R  +   A   L  M    + PD  T++ LI+    EE++ + +    +++++G     
Sbjct: 719 CRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDV 778

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             +  ++N ++  G  ++A  ++L   E  V       ++L++   +     +A  V++E
Sbjct: 779 ITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDE 838

Query: 243 IKEAG 247
           + + G
Sbjct: 839 MLQRG 843



 Score = 45.8 bits (107), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 46/248 (18%), Positives = 103/248 (41%), Gaps = 4/248 (1%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K+ ++P +A+Y  L+   C    +  A  + ++M    +VP   + ++++    ++   +
Sbjct: 456 KIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLD 515

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              + +  + +  L P++  +  +I    +      A  + D++ E         YN I+
Sbjct: 516 QALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTIL 575

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQ 180
            G  ++K +  A  +  EM +  V PD  TF+ LI+      N    +  +E +     +
Sbjct: 576 NGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLK 635

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIV 239
                +  LI+ +    E EK  ++  D     +         L++   + G  S+A  +
Sbjct: 636 PDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRL 695

Query: 240 YEEIKEAG 247
           ++E+ E G
Sbjct: 696 WDEMVEKG 703



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 56/287 (19%), Positives = 122/287 (42%), Gaps = 25/287 (8%)

Query: 30  ALDVVEQMVQGELVPSTETINSIL----HACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           A  V+ +MV+   V   E + S++    +       F+L+ R Y  +    L+   E FR
Sbjct: 255 AQAVILRMVRKSGVSRVEIVESLVLTYGNCGSNPLVFDLLVRTY--VQARKLREGCEAFR 312

Query: 86  SM------ISLN---------VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
            +      +S+N         VK+   D A+ +  ++    +       N ++    + +
Sbjct: 313 VLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQ 372

Query: 131 DVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK---YVFM 187
            ++     L +ME+  V PD  T++ LI+    +  + + +E + S  G+  K   + + 
Sbjct: 373 KIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYN 432

Query: 188 ALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA 246
           A+IN     G++ +A+ V+ +  +I +   +   + L+     +    DA  +++E+   
Sbjct: 433 AIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQ 492

Query: 247 GCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL 293
           G   +  +  ALI  L+  G L++ ++   ++ +     D     IL
Sbjct: 493 GVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTIL 539


>gi|302754000|ref|XP_002960424.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
 gi|300171363|gb|EFJ37963.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
          Length = 321

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/240 (22%), Positives = 112/240 (46%), Gaps = 7/240 (2%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           + ++P+  +Y  LI   C   K+H AL+++++M      P+  T N+ LH   +  + + 
Sbjct: 74  MGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKVDD 133

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
              ++  +    ++ +   + ++I    +      AYSLLD+++    +P    YNAI++
Sbjct: 134 ALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYNAILS 193

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQI 181
              +   +  A  + K M  + + PD  TF  ++   C     +D +   +Q+KSAG   
Sbjct: 194 WLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAP 253

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
            + ++  LI+A    G   +A +++ +    + SR    ++   AL    +T D+ +V E
Sbjct: 254 REVIYNTLIDALNRAGRVSEAYRLLQE----MISRGLSPNSRTYALMRKQQTDDSNLVVE 309



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/283 (19%), Positives = 113/283 (39%), Gaps = 43/283 (15%)

Query: 37  MVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKD 96
           M +   +P+  T   ++    ++        +  ++      PN+  F  ++    K   
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGR 60

Query: 97  FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSY 156
              AY  ++ ++ M + PT   YN ++ G+ +++ +  AL +L+EM     +P+  T++ 
Sbjct: 61  SAEAYGYIETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNT 120

Query: 157 LIHNC---SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAE--- 210
            +H        +D +  +  +     ++  Y +  LI+     G+  +A  ++ + E   
Sbjct: 121 FLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSG 180

Query: 211 -IP-------------VKSRSEVKSALVSALASHG-------------------RTSDAI 237
            +P               SR      L   +   G                   R  DA+
Sbjct: 181 CVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDAL 240

Query: 238 IVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEV 278
           ++ +++K AG  L PR VI   LI+ LN  G ++   +LL+E+
Sbjct: 241 LLLQQMKSAG--LAPREVIYNTLIDALNRAGRVSEAYRLLQEM 281



 Score = 43.1 bits (100), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 120/334 (35%), Gaps = 51/334 (15%)

Query: 79  PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMV 138
           P   TF  ++    K      A+ L++ + E    P A ++N IM    ++     A   
Sbjct: 8   PTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGRSAEAYGY 67

Query: 139 LKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGE 198
           ++ M    V P   T++ LI     EE + +  E L+   G+                  
Sbjct: 68  IETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGR------------------ 109

Query: 199 FEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
             +   V  +               +  L  +G+  DA+ ++  + E    L+      L
Sbjct: 110 GHEPNHVTYNT-------------FLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTL 156

Query: 259 IEHLNSEGELNRLIQLLEEVHDPD-YWMDGCCRLILHCV-RFKQLSSATDLLKQ------ 310
           I+ L   G+L     LL+E+ +       GC   IL  + +  +++ A  L K+      
Sbjct: 157 IDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGI 216

Query: 311 LKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGA 370
           L D      M   Y      C+    D       L LLQ +K   GL P     + L+ A
Sbjct: 217 LPDWLTFGMMVFGY------CRGHRIDDA-----LLLLQQMKSA-GLAPREVIYNTLIDA 264

Query: 371 CVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYK 404
              A  +  A+ + +E  + GL  N  +Y  M K
Sbjct: 265 LNRAGRVSEAYRLLQEMISRGLSPNSRTYALMRK 298


>gi|222628664|gb|EEE60796.1| hypothetical protein OsJ_14385 [Oryza sativa Japonica Group]
          Length = 808

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 83/410 (20%), Positives = 173/410 (42%), Gaps = 26/410 (6%)

Query: 22  CDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNS 81
           C + ++  A  +V++MV   + P   T + I+    +S   +   R+   +     +PNS
Sbjct: 180 CKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNS 239

Query: 82  ETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKE 141
            T+ S+I        ++ +  +   +    ++PT    N+ +   F+      A  +   
Sbjct: 240 ITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDS 299

Query: 142 MEQANVKPDSQTFSYLIHNCSNEED-----IIKYYEQLKSAGGQITKYVFMALINAYTTC 196
           M     KPD  ++S ++H  +   D     +   +  + + G    K+VF  LINAY  C
Sbjct: 300 MVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARC 359

Query: 197 GEFEKARQVVLDAE----IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP 252
           G  +KA  +  D +    IP    +   + ++S+L   GR  DA+  +  + + G     
Sbjct: 360 GMMDKAMLIFEDMQNKGMIP---DTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSE 416

Query: 253 RAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC---CRLILHCVRFKQLSSATDLLK 309
                LI+   + GEL +  +L+ E+ + D    G      +I +  +  +++   D++ 
Sbjct: 417 AVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMD 476

Query: 310 QLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLL- 368
            +    +   +       E +C +      +++    LL  +   +G+ P+      L+ 
Sbjct: 477 MMVQTGQRPNVVTFNSLMEGYCLVG-----NMEEAFALLDAMA-SIGIEPNCYIYGTLVD 530

Query: 369 GACVNARDLKRAHLIWKEYENAGL-PYNVLSYLWMYKAFLASGNRKSASK 417
           G C N R +  A  ++++  + G+ P +VL  + ++  F A   R +A+K
Sbjct: 531 GYCKNGR-IDDALTVFRDMLHKGVKPTSVLYSIILHGLFQA--RRTTAAK 577



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/304 (20%), Positives = 137/304 (45%), Gaps = 17/304 (5%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVP-STETINSILHACEESYEFN 63
           + + PS A Y  LI   C+  ++  A +++ +M+  ++ P   +  +SI++   +     
Sbjct: 410 IGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVA 469

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             + I  M+     +PN  TF S++     + + + A++LLD +  + + P   +Y  ++
Sbjct: 470 EGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLV 529

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQ 180
            GY +   +  AL V ++M    VKP S  +S ++H            K + ++  +G  
Sbjct: 530 DGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTT 589

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAII 238
           ++ + +  ++         ++A  ++L+    +  + ++ +   ++SA+   GR  +A  
Sbjct: 590 VSIHTYGVVLGGLCRNNCTDEA-NMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKE 648

Query: 239 VYEEIKEAGC--NLEPRA--VIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILH 294
           +++ I   G   N++  +  +  LI+  + E   N  I + +  H  D       RL+ H
Sbjct: 649 LFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASD------SRLLNH 702

Query: 295 CVRF 298
            VR 
Sbjct: 703 IVRM 706



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 71/353 (20%), Positives = 143/353 (40%), Gaps = 52/353 (14%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  LI     + +  + L +V ++++  L P   +  S+++   +  E +    +
Sbjct: 98  PTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSY-SLIYGFVKDGEVDKAHCL 156

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    + P      S+I    K+K+ D A S++  + +  + P    Y+ I+ G  +
Sbjct: 157 FLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCK 216

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS-----NEEDIIKYYEQLKSAGGQITK 183
            K +  A  VL++M +A  +P+S T++ LIH  S     NE   ++ ++Q+ S G   T 
Sbjct: 217 SKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNES--VRVFKQMSSCGVIPTV 274

Query: 184 YVFMALINAYTTCGEFEKAR----QVVLDAEIP--------------------------- 212
               + I+A    G   +A+     +VL    P                           
Sbjct: 275 DNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIF 334

Query: 213 -------VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
                  +     V + L++A A  G    A++++E+++  G   +      +I  L   
Sbjct: 335 NLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRI 394

Query: 266 GELNRLIQLLEEVHD----PDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDK 314
           G L+  +     + D    P   + GC  LI  C    +L  A +L+ ++ +K
Sbjct: 395 GRLDDALHKFNHMVDIGVPPSEAVYGC--LIQGCCNHGELVKAKELISEMMNK 445


>gi|195651407|gb|ACG45171.1| CRR4 [Zea mays]
          Length = 601

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 120/275 (43%), Gaps = 17/275 (6%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           +SAS+  +I       +   AL + +QM++    P+  TI ++   C ++ +    RR  
Sbjct: 174 TSASWNSMIACYAHGGEFQEALTLFDQMLREGASPNAITITTVFSICAKTGDLETGRRAK 233

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
             +   +L+ N     +++ + VK +  D A    D +   +++  ++M    +AGY   
Sbjct: 234 AWVSEEDLQ-NVIVHTALMEMYVKCRAIDEARREFDRMPRRDVVAWSTM----IAGYSHN 288

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN------EEDIIKYYEQLKSAGGQITK 183
                +L + + M+  N KP+  T   ++  C+        E I  Y E   S    +T 
Sbjct: 289 GRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYIE---SQTLPLTS 345

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
           Y+  ALI+ YT CG   +AR V    E  V       ++++  LA +G   DAI +Y E+
Sbjct: 346 YLGSALIDMYTKCGHVARARDVFHRMEQKVVI---AWNSMIRGLALNGFAEDAIALYGEM 402

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
              G        +AL+      G +++ +   +E+
Sbjct: 403 VGDGVQPNEITFLALLTACTHAGLVDKGMAFFQEM 437


>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
 gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
          Length = 789

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/271 (21%), Positives = 120/271 (44%), Gaps = 4/271 (1%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           KL   P+ A++  LI   C    V  AL + ++M Q  ++P   T   ++     S   +
Sbjct: 189 KLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVD 248

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              R++  +    + P+  T  ++++    +   D A+SLL   ++   +     Y+ ++
Sbjct: 249 DAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLI 308

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQ 180
            G FR K  +   ++ ++M + NVKPD   ++ ++   +      D ++   ++  +G  
Sbjct: 309 RGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVV 368

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
                +  LI  +   G   +AR + L+ +        +  S L+S +  +G T DA  +
Sbjct: 369 PDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRNGLTRDAQEI 428

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNR 270
           + E+++ GC        +LI+ L   G+L +
Sbjct: 429 FNEMEKLGCYPSAVTFNSLIDGLCKTGQLEK 459



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/266 (20%), Positives = 114/266 (42%), Gaps = 17/266 (6%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           KV  AL+++ +M +  +VP T   N ++    +    +  R +   I  H+  PN +T+ 
Sbjct: 351 KVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYS 410

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME-- 143
            +IS   +      A  + ++++++   P+A  +N+++ G  +   ++ A ++  +ME  
Sbjct: 411 ILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKMEIG 470

Query: 144 -------QANVKP----DSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKYVFMAL 189
                  + +  P    DS +   ++    +   I K Y    QL  +G     Y +  L
Sbjct: 471 RNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNIL 530

Query: 190 INAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGC 248
           +N +   G F  A ++  + +    S   V    L++ L    R  DA  V++++++ GC
Sbjct: 531 VNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQMEKNGC 590

Query: 249 NLEPRAVIALIEHLNSEGELNRLIQL 274
             +      ++  +    EL R   L
Sbjct: 591 TPDAAVYRTMMTWMCRRMELPRAFSL 616



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 106/260 (40%), Gaps = 12/260 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A++    M   +  P   T N IL    +     L   +Y  +   N  PN  TF  +I 
Sbjct: 145 AMETFGSMRDFDCTPDVYTYNMILDVLIQKNFLLLALTVYTRMMKLNCLPNVATFSILID 204

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              K  +   A  L D++ +  ++P A  Y  +++G  R K V  A  +  +M+ + V P
Sbjct: 205 GLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGP 264

Query: 150 DSQTFSYLIHNCSNEEDIIKYYEQLK---SAGGQITKYVFMALINAYTTCGEFEKA---- 202
           D  T + L++     + + + +  L+     G  +    +  LI        +E      
Sbjct: 265 DFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQLLY 324

Query: 203 RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
           R+++ D    VK    + + ++  LA  G+  DA+ +  E+ E+G   +      LI+  
Sbjct: 325 RKMIEDN---VKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGF 381

Query: 263 NSEGELN--RLIQLLEEVHD 280
              G L+  R +QL    HD
Sbjct: 382 CDMGLLSEARSLQLEISRHD 401



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/266 (20%), Positives = 111/266 (41%), Gaps = 34/266 (12%)

Query: 11  SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYP 70
           SAS +K++   CD   +H A  ++ Q+      P   T N +++   +   FN   +++ 
Sbjct: 489 SASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFR 548

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
            +    L P++ T+ ++I+  ++ +  + AY + D +++    P A++Y  +M    R+ 
Sbjct: 549 EMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQMEKNGCTPDAAVYRTMMTWMCRRM 608

Query: 131 DVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALI 190
           ++  A               S    YL +  S E++ IK                    I
Sbjct: 609 ELPRAF--------------SLWLKYLRNIRSQEDEAIK-------------------AI 635

Query: 191 NAYTTCGEFEKARQVVLDAEIPVKSRSEVKSAL-VSALASHGRTSDAIIVYEEIKEAGCN 249
             Y    E EKA + +L+ +  +        A+ +  L    R  +A+ ++  ++E    
Sbjct: 636 EGYFEKQEVEKAVRGLLEMDFKLNDFDLGPYAIWLIGLCQTRRVGEALKIFLILEEYKVV 695

Query: 250 LEPRAVIALIEHLNSEGELNRLIQLL 275
           + P   + LI  L  EG+L+R I + 
Sbjct: 696 ITPPCCVKLIYFLLKEGDLDRAIDVF 721



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 73/357 (20%), Positives = 137/357 (38%), Gaps = 47/357 (13%)

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
           +  +K +++ F  +I + +K+   D A      +++ +  P    YN I+    +K  + 
Sbjct: 119 NGGIKVHNDAFFVLIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLIQKNFLL 178

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALI 190
            AL V   M + N  P+  TFS LI       N +D +  ++++   G          L 
Sbjct: 179 LALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRG---------ILP 229

Query: 191 NAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNL 250
           +A+T C                          ++S L    R  DA  +++++K++G   
Sbjct: 230 DAFTYC-------------------------VVISGLCRSKRVDDAYRLFDKMKDSGVGP 264

Query: 251 EPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD--GCCRLILHCVRFKQLSSATDLL 308
           +     AL+        ++    LL       Y +D  G   LI    R K+      L 
Sbjct: 265 DFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQLLY 324

Query: 309 -KQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFL 367
            K ++D  K D     Y ++ +   +A  +   V+  L+LL  +  E G+ P   C + L
Sbjct: 325 RKMIEDNVKPD----VYLYTIMMKGLA--EAGKVRDALELLNEMT-ESGVVPDTVCYNVL 377

Query: 368 LGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424
           +    +   L  A  +  E        NV +Y  +      +G  + A ++ ++M K
Sbjct: 378 IKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEK 434


>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
 gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
          Length = 841

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 132/296 (44%), Gaps = 41/296 (13%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINS-ILHACEESYEFNLVRRIYPM 71
           +Y  L+++ C   K+  A  + E+MV+  + PS  + N+ IL  C++  + +    ++  
Sbjct: 435 TYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQG-DMDSANGVFVE 493

Query: 72  ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNL------------------- 112
           +    LKPN  T+  ++    K  D + A+ L D ++  N+                   
Sbjct: 494 MLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGR 553

Query: 113 ----------------MPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSY 156
                           +PT   YN I+ G+ ++  V  AL V  EM +  V P+  T++ 
Sbjct: 554 TSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTN 613

Query: 157 LIHN-C-SNEEDI-IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIP 212
           LI+  C SN  D+ +K  +++K+ G ++   V+ ALI+ +   G+   A Q++ +  E+ 
Sbjct: 614 LINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVG 673

Query: 213 VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGEL 268
           +     V S+++S          A+ +++ +   G   + +    LI  L  EG+L
Sbjct: 674 LSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKL 729



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 125/282 (44%), Gaps = 12/282 (4%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I PS  +   +I   C   +   + D ++++VQ   +P+  T N I+    +    N   
Sbjct: 534 IAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSAL 593

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +Y  +C   + PN  T+ ++I+   K  + D A  ++D++K   +    ++Y A++ G+
Sbjct: 594 AVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGF 653

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
            RK D+  A  +L E+++  + P+   +S +I       N E  +  ++++ + G     
Sbjct: 654 CRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDL 713

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE---VKSALVSALASHGRTSDAIIVY 240
            ++  LI+     G+   A +  L AE+  K         S L+  L + G+  +A  + 
Sbjct: 714 QIYTTLISGLLKEGKLLFASE--LYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKIL 771

Query: 241 EEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHD 280
           E++    C + P   I   LI     EG L    +L  E+ D
Sbjct: 772 EDMDRK-C-MTPTVFIYNTLITGHFKEGNLQEAFRLHNEMLD 811



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/425 (17%), Positives = 167/425 (39%), Gaps = 54/425 (12%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P++ +Y  +I + C    +  A ++  QM   ++ P+   +NS++    ++       
Sbjct: 360 ICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEAS 419

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++       +  N  T+ S++S   K      A S+ + +    + P+   YN ++ G+
Sbjct: 420 KLFDEAVACGI-ANVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGH 478

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITK 183
            ++ D+  A  V  EM +  +KP+  T+S L+     + D       Y++++      + 
Sbjct: 479 CQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSD 538

Query: 184 YVFMALINAYTTCGEF----EKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
           +    +IN     G      ++ +++V +  IP        + ++      G  + A+ V
Sbjct: 539 FTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPT---CMTYNCIIDGFVKEGSVNSALAV 595

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC--CRLILHCVR 297
           Y E+ + G +        LI        ++  +++++E+ +    +D    C LI    R
Sbjct: 596 YTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCR 655

Query: 298 FKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGL 357
              + +A+ LL +L+                                         E+GL
Sbjct: 656 KGDMVNASQLLSELQ-----------------------------------------EVGL 674

Query: 358 PPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASK 417
            P++     ++      ++++ A  + K   N G+P ++  Y  +    L  G    AS+
Sbjct: 675 SPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFASE 734

Query: 418 LLSKM 422
           L ++M
Sbjct: 735 LYAEM 739



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 28/157 (17%), Positives = 72/157 (45%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           ++ ++P+   Y  +I+    L  +  AL + ++M+   +    +   +++    +  +  
Sbjct: 671 EVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLL 730

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               +Y  +    + P+  T+  +I         ++A  +L+D+    + PT  +YN ++
Sbjct: 731 FASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPTVFIYNTLI 790

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160
            G+F++ ++Q A  +  EM    + PD  T+  L++ 
Sbjct: 791 TGHFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNG 827



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 38/205 (18%), Positives = 83/205 (40%), Gaps = 3/205 (1%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L+    S  +  L+       +++ A+D    +++ ++VP    +N  L    ++    
Sbjct: 147 RLDFESDSRVFNYLLNSYVKTKRINDAVDCFNSLIEKDIVPCLTVMNIFLSELVKNNMIR 206

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             R +Y  +    +K +  T   MI  +++    + A     + K   +   A  Y+ ++
Sbjct: 207 EARDVYNKMASKGVKGDCATISVMIRASMREGKLEEAEGWFREAKNKGVELDARAYSIVI 266

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQ 180
               +K D   AL +L+EM      P    F+ +I  C  +  +   +K   ++ S G  
Sbjct: 267 EAVCKKPDSVAALGLLREMRDKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGEMLSCGKP 326

Query: 181 ITKYVFMALINAYTTCGEFEKARQV 205
           +   V   L+  Y   G+ + A ++
Sbjct: 327 MNVVVATTLMKGYCKQGDLDSALEL 351



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 77/401 (19%), Positives = 160/401 (39%), Gaps = 63/401 (15%)

Query: 38  VQGELVPSTETINSILHA------CEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLN 91
           V+GE++   + +N ++        C++  + +    ++  +  + + PN+ T+  +I   
Sbjct: 316 VKGEMLSCGKPMNVVVATTLMKGYCKQG-DLDSALELFDKMNENGICPNNVTYAVIIEWC 374

Query: 92  VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQ---ANVK 148
            K  + D AY + + +K  ++ PT    N+++ GY + +  + A  +  E      ANV 
Sbjct: 375 CKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACGIANVF 434

Query: 149 PDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
             +   S+L       E     +E++   G + +   +  +I  +   G+ + A  V ++
Sbjct: 435 TYNSLLSWLCKEGKMSE-ACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVE 493

Query: 209 A-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIA--LIEHLNSE 265
             E  +K      S L+      G T  A  +Y+ ++  G N+ P       +I  L   
Sbjct: 494 MLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMR--GENIAPSDFTCNIIINGLCKA 551

Query: 266 GEL----NRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMA 321
           G      +RL +L++E   P      C  +I   V+   ++SA  +  ++          
Sbjct: 552 GRTSESQDRLKKLVQEGFIPTCMTYNC--IIDGFVKEGSVNSALAVYTEM---------- 599

Query: 322 MEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAH 381
                    C+I  +  P+V    +L+                    G C  + ++  A 
Sbjct: 600 ---------CKIGVS--PNVFTYTNLIN-------------------GFC-KSNNMDLAL 628

Query: 382 LIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
            +  E +N G+  +V  Y  +   F   G+  +AS+LLS++
Sbjct: 629 KVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSEL 669


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/300 (21%), Positives = 135/300 (45%), Gaps = 20/300 (6%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +I+   +      AL++ + M++  + P   T+ +++ AC +S    L R+++  I
Sbjct: 164 SWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWI 223

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
             H    N +    +I L  K  + ++A  L   L + +++     +N ++ G+      
Sbjct: 224 EDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVIS----WNTLIGGHTHMNLY 279

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI-----IKYYEQLKSAGGQITKYVFM 187
           + AL++ +EM ++   P+  T   ++  C++   I     I  Y   +  G      +  
Sbjct: 280 KEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLT 339

Query: 188 ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           +LI+ Y  CG+ E A+Q V D+ +     S   +A++   A HG+ + A  ++ ++++ G
Sbjct: 340 SLIDMYAKCGDIEAAKQ-VFDSMLTRSLSSW--NAMIFGFAMHGKANAAFDLFSKMRKNG 396

Query: 248 CNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD------GC-CRLILHCVRFKQ 300
            + +    + L+   +  G L+    +   +   DY +       GC   L+ HC  FK+
Sbjct: 397 IDPDDITFVGLLSACSHSGMLDLGRHIFRSM-SQDYKITPKLEHYGCMIDLLGHCGLFKE 455



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 96/207 (46%), Gaps = 12/207 (5%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHH--NLKPNSETFRSM 87
           AL + ++M++    P+  T+ S+L AC      ++ R I+  I      +   S    S+
Sbjct: 282 ALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSL 341

Query: 88  ISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANV 147
           I +  K  D ++A  + D +    L  + S +NA++ G+        A  +  +M +  +
Sbjct: 342 IDMYAKCGDIEAAKQVFDSM----LTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGI 397

Query: 148 KPDSQTFSYLIHNCSNEE--DIIKYYEQLKSAGGQITKYV--FMALINAYTTCGEFEKAR 203
            PD  TF  L+  CS+    D+ ++  +  S   +IT  +  +  +I+    CG F++A+
Sbjct: 398 DPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAK 457

Query: 204 QVVLDAEIPVKSRSEVKSALVSALASH 230
           +++    +P++    +  +L+ A   H
Sbjct: 458 EMI--RTMPMEPDGVIWCSLLKACKMH 482



 Score = 45.8 bits (107), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 17/165 (10%)

Query: 87  MISLNVKIKDFDS---AYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME 143
           +I  +V    FD    A S+ + ++E NL+    ++N +  G+    D   AL +   M 
Sbjct: 2   LIEFSVLSPHFDGLSYAISIFETIQEPNLL----IWNTMFRGHALNSDSVTALKLYVCMI 57

Query: 144 QANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINAYTTCGEFE 200
              + P+S +F +L+ +C+  + +I   + +  +   G  +  YV  +LI+ Y   G  E
Sbjct: 58  SLGLLPNSYSFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLE 117

Query: 201 KARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEI 243
            A +V         S   V S  AL++  AS G  ++A  +++EI
Sbjct: 118 DAHKV-----FDRSSHRHVVSYTALITGYASRGYINNARKLFDEI 157



 Score = 45.4 bits (106), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 7/109 (6%)

Query: 97  FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSY 156
            ++A  L D++   +++     +NA+++GY    + + AL + K+M + NVKPD  T   
Sbjct: 147 INNARKLFDEISVKDVVS----WNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVT 202

Query: 157 LIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
           ++  C+    I    + +  ++  G      +   LI+ Y+ CGE E A
Sbjct: 203 VVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETA 251


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 96/460 (20%), Positives = 178/460 (38%), Gaps = 41/460 (8%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L +  ++ SY  L+     L K+  A  ++ +M     +P   +  +I+       E  
Sbjct: 103 QLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQ 162

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
            V ++   +    LKPN  T+ S+I L  K         +L ++ +  + P   +Y  ++
Sbjct: 163 KVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLI 222

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQ 180
            G+ +  + Q A  +  EME   + PDS  FS LI   S    ++   K + ++   G +
Sbjct: 223 DGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFE 282

Query: 181 ITKYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDA 236
             +  + ALI+ Y   GE +KA     Q+V   +I +       +AL   L   G    A
Sbjct: 283 PDEVTYTALIDGYCKLGEMKKAFFLHNQMV---QIGLTPNVVTYTALADGLCKSGELDTA 339

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCV 296
             +  E+   G  L       ++  L   G + + ++L+EE+ +     D      L   
Sbjct: 340 NELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDA 399

Query: 297 RFK--QLSSATDLLKQLKD---------------------KFKDDEMAMEYHFSE-IFCQ 332
            +K  ++  A +LL+++ D                     K +D E  +++   + I   
Sbjct: 400 YYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPN 459

Query: 333 IATTDPPDVQIGLDLLQFIKDEL-------GLPPSRKCLDFLLGACVNARDLKRAHLIWK 385
            AT +    Q  +     I  E+       G+ P     + L+     AR++K A  + K
Sbjct: 460 AATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHK 519

Query: 386 EYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKD 425
           E           SY  + K F        A +L  +M ++
Sbjct: 520 EMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFEEMRRE 559



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 75/152 (49%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  ++  L+   C   K+     +++ M++  ++P+  T NSI+          +  
Sbjct: 421 LQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRIST 480

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            IY  +C   + P+S T+  +I  + K ++   A+ L  ++ E     TAS YNA++ G+
Sbjct: 481 EIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGF 540

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
           F++K +  A  + +EM +  +   ++ ++  +
Sbjct: 541 FKRKKLLEARQLFEEMRREGLVASAEIYNLFV 572


>gi|226530385|ref|NP_001145846.1| CRR4 [Zea mays]
 gi|219884683|gb|ACL52716.1| unknown [Zea mays]
 gi|414878658|tpg|DAA55789.1| TPA: CRR4 [Zea mays]
          Length = 601

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 120/275 (43%), Gaps = 17/275 (6%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           +SAS+  +I       +   AL + +QM++    P+  TI ++   C ++ +    RR  
Sbjct: 174 TSASWNSMIACYAHGGEFQEALTLFDQMLREGASPNAITITTVFSICAKTGDLETGRRAK 233

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
             +   +L+ N     +++ + VK +  D A    D +   +++  ++M    +AGY   
Sbjct: 234 AWVSEEDLQ-NVIVHTALMEMYVKCRAIDEARREFDRMPRRDVVAWSTM----IAGYSHN 288

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN------EEDIIKYYEQLKSAGGQITK 183
                +L + + M+  N KP+  T   ++  C+        E I  Y E   S    +T 
Sbjct: 289 GRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYIE---SQTLPLTS 345

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
           Y+  ALI+ YT CG   +AR V    E  V       ++++  LA +G   DAI +Y E+
Sbjct: 346 YLGSALIDMYTKCGHVARARDVFHRMEQKVVI---AWNSMIRGLALNGFAEDAIALYGEM 402

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
              G        +AL+      G +++ +   +E+
Sbjct: 403 VGDGVQPNEITFLALLTACTHAGLVDKGMAFFQEM 437


>gi|50582688|gb|AAT78758.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
 gi|108709716|gb|ABF97511.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1025

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 128/282 (45%), Gaps = 12/282 (4%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P + +Y+ LI   C+   + +A+  +E+MV   + P     + ++ A  E  + +   
Sbjct: 697 IKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNAL 756

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++  +   ++ P+S+T+ +M++  ++      +Y +L D+ E  L P  + Y A++   
Sbjct: 757 QLFSYMKWLHMSPSSKTYVAMVNGLIRKNWLQQSYEILHDMVESGLQPKHTHYIALINAK 816

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
            R  D+ GA  + ++M+   V P     S ++     C   E+ I  +  +  AG   T 
Sbjct: 817 CRVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTI 876

Query: 184 YVFMALINAYTTCGEFE-----KARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAII 238
             F  L++    C EF+       +Q++    + V   +   + L++ L +     DA+ 
Sbjct: 877 ATFTTLMHGL--CKEFKIDDAFHLKQLMESCGLKVDVVT--YNVLITGLCNKKCICDALD 932

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           +YEE+K  G        I L   + + G +    +LL+++ D
Sbjct: 933 LYEEMKSKGLLPNITTYITLTGAMYATGTMQDGEKLLKDIED 974



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 89/440 (20%), Positives = 179/440 (40%), Gaps = 53/440 (12%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P + +Y  L+   C   KV  AL +++ M++  LVP T     +L+      +     
Sbjct: 556 ILPDTYTYTILLDGFCKRGKVVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAAS 615

Query: 67  RIYP-MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            ++  +IC   L  +   + SM++  +K    +    L+ ++ E  + P+++ YN +M G
Sbjct: 616 YMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMHG 675

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQIT 182
           Y +K  +   L + ++M +  +KPD+ T+  LI         E  +K+ E++   G    
Sbjct: 676 YIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEGVFPD 735

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
              F  LI A++   +   A Q+    + + +   S+   A+V+ L        +  +  
Sbjct: 736 NLAFDILIKAFSEKSKMSNALQLFSYMKWLHMSPSSKTYVAMVNGLIRKNWLQQSYEILH 795

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE----------EVHDPDYWMDGCCRL 291
           ++ E+G   +    IALI      G+++   +L E          EV +    + G C+ 
Sbjct: 796 DMVESGLQPKHTHYIALINAKCRVGDIDGAFELKEDMKALGVVPSEVAESSI-VRGLCKC 854

Query: 292 ------------ILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPP 339
                       I+       +++ T L+  L  +FK D+    +H  ++          
Sbjct: 855 GKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDD---AFHLKQLM--------- 902

Query: 340 DVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSY 399
                        +  GL       + L+    N + +  A  +++E ++ GL  N+ +Y
Sbjct: 903 -------------ESCGLKVDVVTYNVLITGLCNKKCICDALDLYEEMKSKGLLPNITTY 949

Query: 400 LWMYKAFLASGNRKSASKLL 419
           + +  A  A+G  +   KLL
Sbjct: 950 ITLTGAMYATGTMQDGEKLL 969



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 92/414 (22%), Positives = 168/414 (40%), Gaps = 39/414 (9%)

Query: 43  VPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYS 102
           +P+  T N+IL+   +        RI   +  + ++ +  T+  MI    K+K    AY 
Sbjct: 261 LPNAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYL 320

Query: 103 LLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-C 161
           LL  ++E+NL P    YN ++ G+F +  +  A+ +  +M + ++KP   T++ LI   C
Sbjct: 321 LLKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYC 380

Query: 162 SN----EEDIIKYYEQLK-------SAGGQITK-----------YVFMALINAYTTCGEF 199
            N    E   + Y  Q+        S   QI K             + ALIN      E 
Sbjct: 381 RNGRTDEARRVLYEMQITGVRPREVSKAKQILKCMLADGIDPDVITYSALINE-GMIAEA 439

Query: 200 EKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALI 259
           E+ +Q +   +I     S   + ++ +    G   +A  VY+ +   G   +     +L+
Sbjct: 440 EQFKQYMSRMKISFDVASF--NCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLL 497

Query: 260 EHLNSEGELNR----LIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKF 315
             L   G L +    ++ LLE+    D        L++   +   L  A DL +++  + 
Sbjct: 498 RGLCQGGHLVQAKEFMVYLLEKACAIDE--KTLNTLLVGICKHGTLDEALDLCEKMVTRN 555

Query: 316 KDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNAR 375
              +        + FC+     P      L LLQ + ++ GL P       LL   VN  
Sbjct: 556 ILPDTYTYTILLDGFCKRGKVVP-----ALILLQMMLEK-GLVPDTIAYTCLLNGLVNEG 609

Query: 376 DLKRAHLIWKEYE-NAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPH 428
            +K A  +++E     GL  + ++Y  M   +L  G      +L+  M +++ +
Sbjct: 610 QVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMHENEVY 663



 Score = 45.1 bits (105), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 28/145 (19%), Positives = 64/145 (44%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           L + PS  +   ++   C   KV  A+ V   +++  +VP+  T  +++H   + ++ + 
Sbjct: 835 LGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDD 894

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
              +  ++    LK +  T+  +I+     K    A  L +++K   L+P  + Y  +  
Sbjct: 895 AFHLKQLMESCGLKVDVVTYNVLITGLCNKKCICDALDLYEEMKSKGLLPNITTYITLTG 954

Query: 125 GYFRKKDVQGALMVLKEMEQANVKP 149
             +    +Q    +LK++E   + P
Sbjct: 955 AMYATGTMQDGEKLLKDIEDRGIVP 979


>gi|13872949|dbj|BAB44054.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 909

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 124/283 (43%), Gaps = 10/283 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           +  S+  Y  L+   C  ++V  A++V   MV   +     T  ++++      E  +  
Sbjct: 252 VKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMAL 311

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           RI   +      P+      MI    K +  + A+SL   L ++ ++P    YNA++   
Sbjct: 312 RITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKL 371

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITK 183
            + +    A  + KEM    ++P+  T++ LIH        ED +  +++++  G ++T 
Sbjct: 372 CKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTV 431

Query: 184 YVFMALINAYTTCGEFEKARQV----VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
           Y + +LIN Y   G  ++AR +    V +   P  +     S L++ L  +G  S  + +
Sbjct: 432 YPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAAS---YSPLIAGLCRNGDLSSCMEL 488

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPD 282
           + E+ E G         ALI     + +++   +L +++ D +
Sbjct: 489 HREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSN 531



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 90/429 (20%), Positives = 173/429 (40%), Gaps = 52/429 (12%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y  LI   C    +  A  ++  MV+  L P+  + + ++     + + +    ++  + 
Sbjct: 434 YNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMA 493

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
              +  N+ TF ++I+   K K  D A  L D + + N++P    +N ++ GY    +++
Sbjct: 494 ERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIR 553

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALI 190
            A  +  +M +  +KPD+ T+  LI        + K   +   L+++   +  +   AL+
Sbjct: 554 KAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALL 613

Query: 191 NAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVS-------ALASHGRTSDAIIVYEEI 243
             +   G F +     L  E+ V+    VK  LVS       AL  H +   + +++ E+
Sbjct: 614 YGFFREGRFTETYH--LWDEMAVRG---VKLDLVSFTIIVYAALKQHDK-EKSCVLFREM 667

Query: 244 KEAGCNLEPRAVIALIEHLNSEGE----LNRLIQLLEEVHDPDYWMDGCCRLILHCVRFK 299
           KE G   +      +I+ L+ E      LN   Q++ + + P+        LI +  +  
Sbjct: 668 KEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTV--LINNLCKSG 725

Query: 300 QLSSATDLLKQ------LKDKFK------------DDEMAMEYHFSEIFCQIATT----- 336
            L SA  L K+      L +KF             D E A + H + +   +A+      
Sbjct: 726 YLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASIVSFNI 785

Query: 337 ------DPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENA 390
                     +Q  +DL+  I  E G  P       ++       D+ +A  +W E    
Sbjct: 786 LIKGLCKAGKIQEAIDLMSKIT-ESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYK 844

Query: 391 GLPYNVLSY 399
           GL  +V++Y
Sbjct: 845 GLKPDVVAY 853



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/249 (19%), Positives = 103/249 (41%), Gaps = 4/249 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  LI   C    +  AL + ++M    +  +    NS+++   +    +  R
Sbjct: 392 LEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRAR 451

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +    L P + ++  +I+   +  D  S   L  ++ E  +      + A++ G+
Sbjct: 452 GLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGF 511

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
            + K +  A  +  +M  +NV P+  TF+ +I       N     + Y+Q+   G +   
Sbjct: 512 CKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDN 571

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEE 242
           Y + +LI+         KA + V D E      +    +AL+      GR ++   +++E
Sbjct: 572 YTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDE 631

Query: 243 IKEAGCNLE 251
           +   G  L+
Sbjct: 632 MAVRGVKLD 640



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 67/356 (18%), Positives = 142/356 (39%), Gaps = 87/356 (24%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           A+  I  ++ ++  LI   C   K+  A  + ++M+   ++P+  T N ++         
Sbjct: 493 AERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNI 552

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMIS----------LNVKIKDFDSAYSLLDDLKEMNL 112
               ++Y  +    LKP++ T+RS+IS           N  + D +++Y++L+     N 
Sbjct: 553 RKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLN-----NF 607

Query: 113 MPTASMYNAIMAGYF------------------------------RKKDVQGALMVLKEM 142
             TA +Y     G F                              ++ D + + ++ +EM
Sbjct: 608 SLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREM 667

Query: 143 EQANVKPDSQTFSYLIHNCSNEEDIIKY---YEQLKSAG--------------------- 178
           ++  VKPD   ++ +I   S EE++I+    ++Q+   G                     
Sbjct: 668 KEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYL 727

Query: 179 ------------GQI--TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--A 222
                       G +   K+ +   ++ + T G+ EKA+   L + +     + + S   
Sbjct: 728 GSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKD--LHSAMLQGHLASIVSFNI 785

Query: 223 LVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           L+  L   G+  +AI +  +I E+G + +  +   +I  L   G++N+  +L  E+
Sbjct: 786 LIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEM 841


>gi|298711148|emb|CBJ32373.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 962

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 101/448 (22%), Positives = 198/448 (44%), Gaps = 46/448 (10%)

Query: 3   AKLEITPS--SASYKKLIT-YSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEES 59
           AKLE+     SA Y  +++ Y+ D      A  +V++M   ++     T  + ++AC+E+
Sbjct: 222 AKLELEGLDLSAVYSAVVSGYAVDG-SWEDASALVDEMFANDVPRDEYTYCAAMNACKEA 280

Query: 60  YEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMN--LMPTAS 117
            ++       P +    + PN+  + ++I         + A+   ++ +E +  L PT++
Sbjct: 281 GKWMQAAAFLPRMREDGVPPNTIAYNTVIGACAFFGRPNKAW---NNNRETSSFLRPTST 337

Query: 118 MYN-----------AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI-----HNC 161
             N           A  AG F       AL +++EM++  V+PD  T+  L+        
Sbjct: 338 RENKGRGLSPAQAEASDAGDF-------ALGLMEEMKREGVEPDIITYGSLMSALSPRGL 390

Query: 162 SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ--VVLDAEIPVKSRSEV 219
           +  + +++ +E L  +G +     +++ I AY   G++E+A Q  V +  E  V+     
Sbjct: 391 AGADIVLELFETLAKSGLKPNSITYVSAIRAYGDKGDWERAEQMLVGMQKEHGVEPNRFC 450

Query: 220 KSALVSALASHGRTSDAIIVYEEIKEAGCNLEP---RAVIALIEHLNS-EGELNRLIQLL 275
            SA+V ALA+ G+   A+   +E++E G + +P    A I   E     E  L+ L +L+
Sbjct: 451 YSAVVKALANGGQWKRALETLDEMRECGLSADPVVYTAAIGACEKFGQWEKALDTLSKLV 510

Query: 276 EEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLK-DKFKDDEMAMEYHFSEIFCQIA 334
            E       M G    I    + KQ+    DL+  +K    K D    EY ++ +  + +
Sbjct: 511 SEKPPMRSLMWGYNAAISALGKAKQMEGIKDLVATMKASGLKPD----EYTYAAMM-RAS 565

Query: 335 TTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPY 394
             D    +    L++   ++ G+ P+R   + L+ + +    +++A  I       G+P 
Sbjct: 566 GIDGSWEESWSMLVEM--EQAGVRPNRVVYNTLIASVLKGEQMEKADDILNRMREGGVPP 623

Query: 395 NVLSYLWMYKAFLASGNRKSASKLLSKM 422
           +V +Y  +        + + A  LLS+M
Sbjct: 624 DVTTYTTIMSGCKRESDWRRAEALLSEM 651



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/156 (19%), Positives = 76/156 (48%), Gaps = 3/156 (1%)

Query: 50  NSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKE 109
           N+ + A  ++ +   ++ +   +    LKP+  T+ +M+  +     ++ ++S+L ++++
Sbjct: 524 NAAISALGKAKQMEGIKDLVATMKASGLKPDEYTYAAMMRASGIDGSWEESWSMLVEMEQ 583

Query: 110 MNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK 169
             + P   +YN ++A   + + ++ A  +L  M +  V PD  T++ ++  C  E D  +
Sbjct: 584 AGVRPNRVVYNTLIASVLKGEQMEKADDILNRMREGGVPPDVTTYTTIMSGCKRESDWRR 643

Query: 170 ---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
                 +++S G +       A++  Y   GE E+A
Sbjct: 644 AEALLSEMESFGVKPNSRTLTAVLKVYGDAGEVERA 679


>gi|297723047|ref|NP_001173887.1| Os04g0351333 [Oryza sativa Japonica Group]
 gi|255675359|dbj|BAH92615.1| Os04g0351333 [Oryza sativa Japonica Group]
          Length = 740

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 83/410 (20%), Positives = 173/410 (42%), Gaps = 26/410 (6%)

Query: 22  CDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNS 81
           C + ++  A  +V++MV   + P   T + I+    +S   +   R+   +     +PNS
Sbjct: 94  CKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNS 153

Query: 82  ETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKE 141
            T+ S+I        ++ +  +   +    ++PT    N+ +   F+      A  +   
Sbjct: 154 ITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDS 213

Query: 142 MEQANVKPDSQTFSYLIHNCSNEED-----IIKYYEQLKSAGGQITKYVFMALINAYTTC 196
           M     KPD  ++S ++H  +   D     +   +  + + G    K+VF  LINAY  C
Sbjct: 214 MVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARC 273

Query: 197 GEFEKARQVVLDAE----IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP 252
           G  +KA  +  D +    IP    +   + ++S+L   GR  DA+  +  + + G     
Sbjct: 274 GMMDKAMLIFEDMQNKGMIP---DTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSE 330

Query: 253 RAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC---CRLILHCVRFKQLSSATDLLK 309
                LI+   + GEL +  +L+ E+ + D    G      +I +  +  +++   D++ 
Sbjct: 331 AVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMD 390

Query: 310 QLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLL- 368
            +    +   +       E +C +      +++    LL  +   +G+ P+      L+ 
Sbjct: 391 MMVQTGQRPNVVTFNSLMEGYCLVG-----NMEEAFALLDAMA-SIGIEPNCYIYGTLVD 444

Query: 369 GACVNARDLKRAHLIWKEYENAGL-PYNVLSYLWMYKAFLASGNRKSASK 417
           G C N R +  A  ++++  + G+ P +VL  + ++  F A   R +A+K
Sbjct: 445 GYCKNGR-IDDALTVFRDMLHKGVKPTSVLYSIILHGLFQA--RRTTAAK 491



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/300 (19%), Positives = 131/300 (43%), Gaps = 9/300 (3%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVP-STETINSILHACEESYEFN 63
           + + PS A Y  LI   C+  ++  A +++ +M+  ++ P   +  +SI++   +     
Sbjct: 324 IGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVA 383

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             + I  M+     +PN  TF S++     + + + A++LLD +  + + P   +Y  ++
Sbjct: 384 EGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLV 443

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQ 180
            GY +   +  AL V ++M    VKP S  +S ++H            K + ++  +G  
Sbjct: 444 DGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTT 503

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAII 238
           ++ + +  ++         ++A  ++L+    +  + ++ +   ++SA+   GR  +A  
Sbjct: 504 VSIHTYGVVLGGLCRNNCTDEA-NMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKE 562

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRF 298
           +++ I   G     +    +I +L  E        L   V    +  D   RL+ H VR 
Sbjct: 563 LFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDS--RLLNHIVRM 620



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 71/353 (20%), Positives = 143/353 (40%), Gaps = 52/353 (14%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  LI     + +  + L +V ++++  L P   +  S+++   +  E +    +
Sbjct: 12  PTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSY-SLIYGFVKDGEVDKAHCL 70

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    + P      S+I    K+K+ D A S++  + +  + P    Y+ I+ G  +
Sbjct: 71  FLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCK 130

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS-----NEEDIIKYYEQLKSAGGQITK 183
            K +  A  VL++M +A  +P+S T++ LIH  S     NE   ++ ++Q+ S G   T 
Sbjct: 131 SKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNES--VRVFKQMSSCGVIPTV 188

Query: 184 YVFMALINAYTTCGEFEKAR----QVVLDAEIP--------------------------- 212
               + I+A    G   +A+     +VL    P                           
Sbjct: 189 DNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIF 248

Query: 213 -------VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
                  +     V + L++A A  G    A++++E+++  G   +      +I  L   
Sbjct: 249 NLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRI 308

Query: 266 GELNRLIQLLEEVHD----PDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDK 314
           G L+  +     + D    P   + GC  LI  C    +L  A +L+ ++ +K
Sbjct: 309 GRLDDALHKFNHMVDIGVPPSEAVYGC--LIQGCCNHGELVKAKELISEMMNK 359


>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
 gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
          Length = 614

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 156/391 (39%), Gaps = 63/391 (16%)

Query: 43  VPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYS 102
           +P+   + + L +  E+Y F      Y  +    + P ++ F  ++   ++     SA +
Sbjct: 212 LPAWSDLMNRLPSVPEAYAF------YLQLLDAGVPPEAKQFNMLMRDMIRSGKLASARN 265

Query: 103 LLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-- 160
           + D++    + PT   +N +M+G  +  D+  A  +   M +A V PD  T+   +    
Sbjct: 266 MFDEMLRRGVPPTVVTFNTLMSGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLC 325

Query: 161 -CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEV 219
                +D ++ +E+++  G      VF  LI+A+  C E   A  + L  E+  +    +
Sbjct: 326 KAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAH--CKEGNVAAGLELHREMATRG---I 380

Query: 220 KSALVS--ALASH-GRTSD---AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQ 273
           K+ LV+  ALA+   R  D   A  + EE++  G   +      LI+    EGEL+  ++
Sbjct: 381 KTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAME 440

Query: 274 LLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFK--DDEMAMEYHFSEIFC 331
           + +E+ D    +D                + T L+  L    +  D E         I C
Sbjct: 441 MKQEMSDEGVALDEV--------------TYTTLISGLSKSGRSVDSE--------RILC 478

Query: 332 QIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAG 391
           ++                    E GL P       ++ A     D+K    + KE +N G
Sbjct: 479 EMM-------------------EAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKG 519

Query: 392 LPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
               V++Y  +   F   G  K+A  LL+ M
Sbjct: 520 RKPGVVTYNVVMNGFCILGQMKNADMLLNAM 550



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 89/189 (47%), Gaps = 4/189 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  LI   C   ++ +A+++ ++M    +     T  +++    +S       
Sbjct: 415 LKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSE 474

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           RI   +    L+P++ T+  +I    K  D  + + LL +++     P    YN +M G+
Sbjct: 475 RILCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMNGF 534

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEEDIIKYYEQLKSAGGQITKY- 184
                ++ A M+L  M    V PD  T++ L+   C + +  ++  E+LKSA G ++ + 
Sbjct: 535 CILGQMKNADMLLNAMLNIGVCPDDITYNILLDGHCKHGK--VRDAEELKSAKGMVSDFG 592

Query: 185 VFMALINAY 193
           ++ +LIN +
Sbjct: 593 LYTSLINEF 601



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/194 (17%), Positives = 83/194 (42%), Gaps = 3/194 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  ++  L++  C    ++ A  +   M +  + P   T  + +    ++       
Sbjct: 275 VPPTVVTFNTLMSGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAV 334

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +    + PN+  F ++I  + K  +  +   L  ++    +      YNA+  G 
Sbjct: 335 EMFEEMRERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGL 394

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITK 183
            R +D++ A  +++EM    +KPD  T++ LI     E ++   ++  +++   G  + +
Sbjct: 395 CRVRDLKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDE 454

Query: 184 YVFMALINAYTTCG 197
             +  LI+  +  G
Sbjct: 455 VTYTTLISGLSKSG 468



 Score = 45.1 bits (105), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 34/197 (17%), Positives = 90/197 (45%), Gaps = 5/197 (2%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEES 59
           + AK  + P   +Y   +   C   ++  A+++ E+M +  + P+T    +++ A C+E 
Sbjct: 304 LMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAHCKEG 363

Query: 60  YEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMY 119
                   ++  +    +K +   + ++ +   +++D  +A  ++++++   L P    Y
Sbjct: 364 -NVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPDKVTY 422

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE---DIIKYYEQLKS 176
             ++ G+ ++ ++  A+ + +EM    V  D  T++ LI   S      D  +   ++  
Sbjct: 423 TTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERILCEMME 482

Query: 177 AGGQITKYVFMALINAY 193
           AG +     +  +I+A+
Sbjct: 483 AGLEPDNTTYTMVIDAF 499


>gi|242084804|ref|XP_002442827.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
 gi|241943520|gb|EES16665.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
          Length = 899

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/275 (20%), Positives = 119/275 (43%), Gaps = 7/275 (2%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  LI       +   A + V +M    L P+     SI+    +  +      ++ ++
Sbjct: 336 AYGVLINVLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLM 395

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
            H   +PN+ T+ S+I   ++ +    A +L+  ++E  + P    Y  ++ G  +K + 
Sbjct: 396 EHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEF 455

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINA 192
             A  + + MEQ  + PD Q ++ L H         + Y  L   G  +TK  + +L++ 
Sbjct: 456 DNAFRLFEMMEQNGLTPDEQAYNVLTHALCKSGRAEEAYSFLVRKGVVLTKVTYTSLVDG 515

Query: 193 YTTCGEFEKARQVVLDAEI--PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNL 250
           ++  G  + A  V+++  +    K+ S   S L+ AL    + ++A+ + +++  +G   
Sbjct: 516 FSKAGNTDFA-AVLIEKMVNEGCKADSYTYSVLLQALCKQKKLNEALSILDQMTLSGVKC 574

Query: 251 EPRAVIALIEHLNSEGELNRLIQLLEEV----HDP 281
              A   +I  +  EG+ +    +  E+    H P
Sbjct: 575 NIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKP 609



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/227 (19%), Positives = 102/227 (44%), Gaps = 35/227 (15%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEE----SYEFNL 64
           PS+ +Y   I+  C + ++  A  ++ +M +  + P   T N  ++ C         F+ 
Sbjct: 609 PSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFINGCGHMGYMDRAFST 668

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIK----------------DFDSAYSLLDDLK 108
           ++R+    C    +PN  T+  ++   +K+                 + D+ + LL+ + 
Sbjct: 669 LKRMIDASC----EPNYWTYWILLKHFLKMSLVDAHYVDTSGMWNWIELDTVWQLLERMV 724

Query: 109 EMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII 168
           +  L PTA  Y++I+AG+ +   ++ A ++   M   ++ P+ + ++ LI  C +    I
Sbjct: 725 KHGLNPTAVTYSSIIAGFCKATRLEEACVLFDHMRGKDISPNEEIYTMLIKCCCD----I 780

Query: 169 KYYEQLKSAGGQITKYVFMALINAY-----TTC--GEFEKARQVVLD 208
           K + +  S    + ++ F   + +Y       C  G+++KA+ +  D
Sbjct: 781 KLFGKAVSFVTDMIEFGFQPHLESYHYLIVGLCDEGDYDKAKSLFCD 827



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 72/418 (17%), Positives = 159/418 (38%), Gaps = 59/418 (14%)

Query: 35  EQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKI 94
           + +V+G   P+  T  +I++   ++   +   R+   +   N K + + +  +I++ +K 
Sbjct: 289 DAIVRG-FTPTVITFTNIINGYCKAERIDDALRVKTSMLSSNCKLDLQAYGVLINVLIKK 347

Query: 95  KDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTF 154
             F  A   + ++    L P   +Y +I+ GY +   V  AL V + ME    +P++ T+
Sbjct: 348 CRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTY 407

Query: 155 SYLIHN------------------------------------CSNEE--DIIKYYEQLKS 176
           S LI+                                     C   E  +  + +E ++ 
Sbjct: 408 SSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQ 467

Query: 177 AGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDA 236
            G    +  +  L +A    G  E+A   ++   + +   +   ++LV   +  G T  A
Sbjct: 468 NGLTPDEQAYNVLTHALCKSGRAEEAYSFLVRKGVVLTKVT--YTSLVDGFSKAGNTDFA 525

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC-CRLILHC 295
            ++ E++   GC  +      L++ L  + +LN  + +L+++      + G  C ++ + 
Sbjct: 526 AVLIEKMVNEGCKADSYTYSVLLQALCKQKKLNEALSILDQMT-----LSGVKCNIVAYT 580

Query: 296 VRFKQL------SSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQ 349
           +   ++        A  +  ++              F   +C+I   +  +  IG    +
Sbjct: 581 IIISEMIKEGKHDHAKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIG----E 636

Query: 350 FIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFL 407
             +D  G+ P     +  +  C +   + RA    K   +A    N  +Y  + K FL
Sbjct: 637 MERD--GVAPDVVTYNVFINGCGHMGYMDRAFSTLKRMIDASCEPNYWTYWILLKHFL 692



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 112/269 (41%), Gaps = 7/269 (2%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  LI   C   ++H A  V+E+M    +VPS  T N+++    +S        I  ++
Sbjct: 197 TYTLLIKGLCKEGRIHGARRVLEEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALM 256

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
             +   P+  T+  +I   +  +  D A  LL+D       PT   +  I+ GY + + +
Sbjct: 257 ERNGCNPDDWTYNILI-YGLCGEKPDEAEELLNDAIVRGFTPTVITFTNIINGYCKAERI 315

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIH----NCSNEEDIIKYYEQLKSAGGQITKYVFMA 188
             AL V   M  +N K D Q +  LI+     C  +E   +   ++ + G      ++ +
Sbjct: 316 DDALRVKTSMLSSNCKLDLQAYGVLINVLIKKCRFKE-AKETVSEMFANGLAPNVVIYTS 374

Query: 189 LINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           +I+ Y   G+   A +V  L      +  +   S+L+  L    +   A+ +  +++E G
Sbjct: 375 IIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDG 434

Query: 248 CNLEPRAVIALIEHLNSEGELNRLIQLLE 276
                     LI+    + E +   +L E
Sbjct: 435 ITPGVITYTTLIQGQCKKHEFDNAFRLFE 463



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 66/143 (46%)

Query: 33  VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92
           ++E+MV       + T + +L A  +  + N    I   +    +K N   +  +IS  +
Sbjct: 528 LIEKMVNEGCKADSYTYSVLLQALCKQKKLNEALSILDQMTLSGVKCNIVAYTIIISEMI 587

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
           K    D A S+ +++      P+A+ Y   ++ Y +   ++ A  ++ EME+  V PD  
Sbjct: 588 KEGKHDHAKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVV 647

Query: 153 TFSYLIHNCSNEEDIIKYYEQLK 175
           T++  I+ C +   + + +  LK
Sbjct: 648 TYNVFINGCGHMGYMDRAFSTLK 670



 Score = 42.4 bits (98), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
           M+       N  T+  +I    K      A  +L+++    ++P+   YNA++ GY +  
Sbjct: 185 MMVQDGCSLNLHTYTLLIKGLCKEGRIHGARRVLEEMPLRGVVPSVWTYNAMIDGYCKSG 244

Query: 131 DVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEEDIIKYYEQLKSA---GGQITKYVF 186
            ++ AL +   ME+    PD  T++ LI+  C  + D  +  E L  A   G   T   F
Sbjct: 245 RMKDALGIKALMERNGCNPDDWTYNILIYGLCGEKPD--EAEELLNDAIVRGFTPTVITF 302

Query: 187 MALINAYTTCGEFEKARQV 205
             +IN Y      + A +V
Sbjct: 303 TNIINGYCKAERIDDALRV 321



 Score = 39.3 bits (90), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 32/158 (20%), Positives = 64/158 (40%), Gaps = 1/158 (0%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  + P++ +Y  +I   C   ++  A  + + M   ++ P+ E    ++  C +   F 
Sbjct: 725 KHGLNPTAVTYSSIIAGFCKATRLEEACVLFDHMRGKDISPNEEIYTMLIKCCCDIKLFG 784

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEM-NLMPTASMYNAI 122
                   +     +P+ E++  +I       D+D A SL  DL  M +       +  +
Sbjct: 785 KAVSFVTDMIEFGFQPHLESYHYLIVGLCDEGDYDKAKSLFCDLLGMEDYNHNEVAWKIL 844

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160
             G  +   V     +L  ME  + + DS+T+S +  N
Sbjct: 845 NDGLLKAGHVDFCSQLLSAMENRHCQIDSETYSMVTDN 882


>gi|357474081|ref|XP_003607325.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508380|gb|AES89522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/315 (20%), Positives = 142/315 (45%), Gaps = 14/315 (4%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           ITPS  SY  LI   C    +  A  +++ +++  L P+  T   ++    +  +     
Sbjct: 460 ITPSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTLLIDGFFKKGDSERAF 519

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +   N+ P   TF ++I+   K          L++  +   + T+  YN+I+ G+
Sbjct: 520 VVFEQMMAANIAPTDHTFNTVINGLGKTGRVSETQDKLNNFIKQGFVSTSITYNSIIDGF 579

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITK 183
           F++  V  AL+  +EM ++ + PD  T++ LI        I   ++ +  +K  G ++  
Sbjct: 580 FKEGAVDSALLAYREMCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDV 639

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             + ALI+ +    + E A +   +  +I +   + V ++++S          A+ +++E
Sbjct: 640 VAYSALIDGFCKMHDMESASKFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQE 699

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFK--- 299
           + +     + +   ++I  L  EG+L+  + L  E+   D   D    ++++ V      
Sbjct: 700 MIKNKVPCDLQVYTSIIGGLLKEGKLSLALDLYSEMLSKDIVPD----IVMYTVLINGLS 755

Query: 300 ---QLSSATDLLKQL 311
              QL +A+ +LK++
Sbjct: 756 NNGQLENASKILKEM 770



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 100/222 (45%), Gaps = 4/222 (1%)

Query: 43  VPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYS 102
           + +  T N +L    E  + N    ++  +    + P+  ++ ++I  + K    D AYS
Sbjct: 426 ITNVVTYNILLKWLGELGKVNEACNLWEKMVSKGITPSLVSYNNLILGHCKKGCMDKAYS 485

Query: 103 LLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS 162
           +L  + E  L P A  Y  ++ G+F+K D + A +V ++M  AN+ P   TF+ +I+   
Sbjct: 486 MLKSILERGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAANIAPTDHTFNTVINGLG 545

Query: 163 NEEDIIKYYEQLKS---AGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSE 218
               + +  ++L +    G   T   + ++I+ +   G  + A     +  E  +     
Sbjct: 546 KTGRVSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGAVDSALLAYREMCESGISPDVI 605

Query: 219 VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE 260
             ++L+  L    +   A+ ++ ++K  G  L+  A  ALI+
Sbjct: 606 TYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSALID 647



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 84/463 (18%), Positives = 185/463 (39%), Gaps = 68/463 (14%)

Query: 15  KKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICH 74
           + L+   C L  V++AL + +++V+G +VP     + +++ C +  +      +Y  +  
Sbjct: 329 RSLMKGYCVLGDVNLALQLFDEVVEGGVVPDVVIFSVLINGCSKVGDMEKAYELYTRMKL 388

Query: 75  HNLKPNSETFRSMISLNVKIKDFDSAYSLLD---------------------DLKEMN-- 111
             ++PN     S++    +    + AY L D                     +L ++N  
Sbjct: 389 MGIQPNVFIVNSLLEGFHEQNLLEHAYGLFDEAVEHGITNVVTYNILLKWLGELGKVNEA 448

Query: 112 -----------LMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160
                      + P+   YN ++ G+ +K  +  A  +LK + +  +KP++ T++ LI  
Sbjct: 449 CNLWEKMVSKGITPSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTLLIDG 508

Query: 161 C---SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSR 216
                + E     +EQ+ +A    T + F  +IN     G   + +  + +  +    S 
Sbjct: 509 FFKKGDSERAFVVFEQMMAANIAPTDHTFNTVINGLGKTGRVSETQDKLNNFIKQGFVST 568

Query: 217 SEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276
           S   ++++      G    A++ Y E+ E+G + +     +LI+ L      N++   LE
Sbjct: 569 SITYNSIIDGFFKEGAVDSALLAYREMCESGISPDVITYTSLIDGLCKS---NKIGLALE 625

Query: 277 EVHDPDY------------WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEY 324
              D  Y             +DG C++         + SA+    +L D        +  
Sbjct: 626 MHSDMKYKGMKLDVVAYSALIDGFCKM-------HDMESASKFFTELLDIGLTPNTVVYN 678

Query: 325 HFSEIFCQIATTDPPDVQIGLDLLQ-FIKDELGLPPSRKCLDFLLGACVNARDLKRAHLI 383
                F  +      +++  L+L Q  IK++  +P   +    ++G  +    L  A  +
Sbjct: 679 SMISGFIHLN-----NMEAALNLHQEMIKNK--VPCDLQVYTSIIGGLLKEGKLSLALDL 731

Query: 384 WKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDD 426
           + E  +  +  +++ Y  +      +G  ++ASK+L +M  ++
Sbjct: 732 YSEMLSKDIVPDIVMYTVLINGLSNNGQLENASKILKEMDGNN 774



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/156 (20%), Positives = 78/156 (50%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           + +TP++  Y  +I+    L  +  AL++ ++M++ ++    +   SI+    +  + +L
Sbjct: 668 IGLTPNTVVYNSMISGFIHLNNMEAALNLHQEMIKNKVPCDLQVYTSIIGGLLKEGKLSL 727

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
              +Y  +   ++ P+   +  +I+        ++A  +L ++   N+ P+  +YN ++A
Sbjct: 728 ALDLYSEMLSKDIVPDIVMYTVLINGLSNNGQLENASKILKEMDGNNITPSVLVYNILIA 787

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160
           G FR+ ++Q A  +  EM    + PD  T+  L++ 
Sbjct: 788 GNFREGNLQEAFRLHDEMLDKGLVPDDTTYDILVNG 823



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/240 (22%), Positives = 100/240 (41%), Gaps = 38/240 (15%)

Query: 11  SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYP 70
           +A+Y  L+   C  L +++A +++++M +   VPS  T  +++ AC              
Sbjct: 255 AAAYSILVQAVCRRLDLNLACELLKEMREFGWVPSKGTYTAVIVAC-------------- 300

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
                                VK  +F  A  L D++  + L     +  ++M GY    
Sbjct: 301 ---------------------VKQGNFVEALRLKDEMVSVGLPMNVIVTRSLMKGYCVLG 339

Query: 131 DVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKYVFM 187
           DV  AL +  E+ +  V PD   FS LI+ CS   D+ K YE   ++K  G Q   ++  
Sbjct: 340 DVNLALQLFDEVVEGGVVPDVVIFSVLINGCSKVGDMEKAYELYTRMKLMGIQPNVFIVN 399

Query: 188 ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           +L+  +      E A  +  +A     +     + L+  L   G+ ++A  ++E++   G
Sbjct: 400 SLLEGFHEQNLLEHAYGLFDEAVEHGITNVVTYNILLKWLGELGKVNEACNLWEKMVSKG 459



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/243 (19%), Positives = 109/243 (44%), Gaps = 6/243 (2%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           +S +Y  +I        V  AL    +M +  + P   T  S++    +S +  L   ++
Sbjct: 568 TSITYNSIIDGFFKEGAVDSALLAYREMCESGISPDVITYTSLIDGLCKSNKIGLALEMH 627

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
             + +  +K +   + ++I    K+ D +SA     +L ++ L P   +YN++++G+   
Sbjct: 628 SDMKYKGMKLDVVAYSALIDGFCKMHDMESASKFFTELLDIGLTPNTVVYNSMISGFIHL 687

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVF 186
            +++ AL + +EM +  V  D Q ++ +I     E  +   +  Y ++ S        ++
Sbjct: 688 NNMEAALNLHQEMIKNKVPCDLQVYTSIIGGLLKEGKLSLALDLYSEMLSKDIVPDIVMY 747

Query: 187 MALINAYTTCGEFEKARQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
             LIN  +  G+ E A +++  +D    +     V + L++     G   +A  +++E+ 
Sbjct: 748 TVLINGLSNNGQLENASKILKEMDGN-NITPSVLVYNILIAGNFREGNLQEAFRLHDEML 806

Query: 245 EAG 247
           + G
Sbjct: 807 DKG 809



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 82/182 (45%), Gaps = 1/182 (0%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I+P   +Y  LI   C   K+ +AL++   M    +       ++++    + ++     
Sbjct: 600 ISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSALIDGFCKMHDMESAS 659

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           + +  +    L PN+  + SMIS  + + + ++A +L  ++ +  +     +Y +I+ G 
Sbjct: 660 KFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQEMIKNKVPCDLQVYTSIIGGL 719

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA-GGQITKYV 185
            ++  +  AL +  EM   ++ PD   ++ LI+  SN   +    + LK   G  IT  V
Sbjct: 720 LKEGKLSLALDLYSEMLSKDIVPDIVMYTVLINGLSNNGQLENASKILKEMDGNNITPSV 779

Query: 186 FM 187
            +
Sbjct: 780 LV 781



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 56/289 (19%), Positives = 113/289 (39%), Gaps = 37/289 (12%)

Query: 38  VQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDF 97
           V G+  PS +     L  C   Y F               + +S  F  ++   V++   
Sbjct: 122 VFGDATPSAKVFVECLLECSGRYGF---------------ESDSRVFNYLLKSFVRVNKI 166

Query: 98  DSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYL 157
             A      + E +L+P   + N ++    R+  V  A  +  EM +  +  D  T   +
Sbjct: 167 TDAVECFRTMLEHDLVPWVPIMNNLLTAMVRRNMVCDARQLYDEMVERGIYGDCYTLHVV 226

Query: 158 IHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYT-------TCGEFEKARQVVL 207
           +  C  E   E++ K++++ K  G ++    +  L+ A          C   ++ R+   
Sbjct: 227 MRACMKEGKFEEVEKFFKEAKGRGLEVDAAAYSILVQAVCRRLDLNLACELLKEMREF-- 284

Query: 208 DAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
              +P K      +A++ A    G   +A+ + +E+   G  +      +L++     G+
Sbjct: 285 -GWVPSKG---TYTAVIVACVKQGNFVEALRLKDEMVSVGLPMNVIVTRSLMKGYCVLGD 340

Query: 268 LNRLIQLLEEVHD----PDYWMDGCCRLILHCVRFKQLSSATDLLKQLK 312
           +N  +QL +EV +    PD  +     LI  C +   +  A +L  ++K
Sbjct: 341 VNLALQLFDEVVEGGVVPDVVIFSV--LINGCSKVGDMEKAYELYTRMK 387



 Score = 38.1 bits (87), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 20/110 (18%), Positives = 52/110 (47%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           K+ +ALD+  +M+  ++VP       +++    + +     +I   +  +N+ P+   + 
Sbjct: 724 KLSLALDLYSEMLSKDIVPDIVMYTVLINGLSNNGQLENASKILKEMDGNNITPSVLVYN 783

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
            +I+ N +  +   A+ L D++ +  L+P  + Y+ ++ G  +     G 
Sbjct: 784 ILIAGNFREGNLQEAFRLHDEMLDKGLVPDDTTYDILVNGKLKVSHTLGG 833


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/262 (21%), Positives = 118/262 (45%), Gaps = 12/262 (4%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +I+   +      AL++ + M++  + P   T+ +++ AC +S    L R+++  I
Sbjct: 190 SWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWI 249

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
             H    N +   ++I L  K  + ++A  L + L   +++     +N ++ GY      
Sbjct: 250 DDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVIS----WNTLIGGYTHMNLY 305

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI-----IKYYEQLKSAGGQITKYVFM 187
           + AL++ +EM ++   P+  T   ++  C++   I     I  Y   +  G      +  
Sbjct: 306 KEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRT 365

Query: 188 ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           +LI+ Y  CG+ E A QV     I  KS S   +A++   A HGR   +  ++  +++ G
Sbjct: 366 SLIDMYAKCGDIEAAHQVF--NSILHKSLSSW-NAMIFGFAMHGRADASFDIFSRMRKNG 422

Query: 248 CNLEPRAVIALIEHLNSEGELN 269
              +    + L+   +  G L+
Sbjct: 423 IEPDDITFVGLLSACSHSGMLD 444



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/248 (19%), Positives = 104/248 (41%), Gaps = 33/248 (13%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL +   M+   L+P++ T   +L +C +S  F   ++I+  +       +     S+IS
Sbjct: 75  ALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLIS 134

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASM---------------------------YNAI 122
           + V+    + A+ + D+    +++   ++                           +NA+
Sbjct: 135 MYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAM 194

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGG 179
           ++GY    + + AL + K+M + NV+PD  T   ++  C+    I    + +  +   G 
Sbjct: 195 ISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGF 254

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
                +  ALI+ Y+ CGE E A    L   +P K      + L+          +A+++
Sbjct: 255 GSNLKIVNALIDLYSKCGELETA--CGLFEGLPYKDVISWNT-LIGGYTHMNLYKEALLL 311

Query: 240 YEEIKEAG 247
           ++E+  +G
Sbjct: 312 FQEMLRSG 319



 Score = 45.1 bits (105), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 23/190 (12%)

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDS---AYSLLDDLKEMNLMPTASMYNA 121
           +R I+  +    L   +     +I   +    FD    A S+ + ++E NL+    ++N 
Sbjct: 6   LRMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLL----IWNT 61

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQI 181
           +  G+    D   AL +   M    + P+S TF +L+ +C+      K +++ +   G +
Sbjct: 62  MFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKS----KAFKEGQQIHGHV 117

Query: 182 TK-------YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRT 233
            K       YV  +LI+ Y   G  E A +V  ++      R  V  +AL+   AS G  
Sbjct: 118 LKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDES----PHRDVVSYTALIKGYASRGYI 173

Query: 234 SDAIIVYEEI 243
            +A  +++EI
Sbjct: 174 ENAQKMFDEI 183


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 120/263 (45%), Gaps = 13/263 (4%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +IT   +      AL++ ++M++  + P   T+ S+L AC +S    L R I+ ++
Sbjct: 182 SWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLV 241

Query: 73  -CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131
             HH    + +   + I L  K  D + A  L + L   +++     +N ++ GY     
Sbjct: 242 DDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVS----WNTLIGGYTHMNL 297

Query: 132 VQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI-----IKYYEQLKSAGGQITKYVF 186
            + AL++ +EM ++   P+  T   ++  C++   I     I  Y   +  G      + 
Sbjct: 298 YKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALR 357

Query: 187 MALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA 246
            +LI+ Y  CG+ E A QV     +  KS S   +A++   A HGR + A  ++  +++ 
Sbjct: 358 TSLIDMYAKCGDIEAAHQVF--NSMMHKSLSS-WNAMIFGFAMHGRANAAFDLFSRMRKN 414

Query: 247 GCNLEPRAVIALIEHLNSEGELN 269
           G   +   ++ L+   +  G L+
Sbjct: 415 GIEPDDITLVGLLSACSHSGLLD 437



 Score = 46.2 bits (108), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 84/208 (40%), Gaps = 41/208 (19%)

Query: 31  LDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL 90
           L++  +MV    VP+  T   +L +C +S  F   R+I+  +     + +     S+IS+
Sbjct: 68  LEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISM 127

Query: 91  ---NVKIKD----FD------------------------SAYSLLDDLKEMNLMPTASMY 119
              N +++D    FD                        SA  + D + E +++     +
Sbjct: 128 YARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVS----W 183

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI-----IKYYEQL 174
           NA++ GY      + AL + KEM + NV+PD  T   ++  C+    I     I      
Sbjct: 184 NAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDD 243

Query: 175 KSAGGQITKYVFMALINAYTTCGEFEKA 202
               G   K V  A I  Y+ CG+ E A
Sbjct: 244 HHGFGSSLKIV-NAFIGLYSKCGDVEIA 270


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 120/257 (46%), Gaps = 36/257 (14%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL++ ++M   ++  S  T+  +L AC +  +    RR+   I  + +  N     +M+ 
Sbjct: 218 ALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLD 277

Query: 90  LNVKIKDFDSAYSLLDDLKE-------------------------MNLMPTASM--YNAI 122
           +  K    + A  L D ++E                         +N MP   +  +NA+
Sbjct: 278 MYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNAL 337

Query: 123 MAGYFRKKDVQGALMVLKEME-QANVKPDSQTFSYLIHNCS--NEEDIIKY-YEQLKSAG 178
           ++ Y +      AL+V  E++ Q N+K +  T    +  C+     ++ ++ +  +K  G
Sbjct: 338 ISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNG 397

Query: 179 GQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAII 238
            ++  YV  ALI+ Y+ CG+ EKAR+V    E   K    V SA++  LA HG  S+A+ 
Sbjct: 398 IKMNFYVTSALIHMYSKCGDLEKAREVFNSVE---KRDVFVWSAMIGGLAMHGCGSEAVD 454

Query: 239 VYEEIKEAGCNLEPRAV 255
           ++ +++EA  N++P  V
Sbjct: 455 MFYKMQEA--NVKPNGV 469



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 94/210 (44%), Gaps = 14/210 (6%)

Query: 48  TINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL 107
           T+ S L AC +     L R I+  I  + +K N     ++I +  K  D + A  + + +
Sbjct: 369 TLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSV 428

Query: 108 KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---- 163
           ++ ++     +++A++ G         A+ +  +M++ANVKP+  TF+ +   CS+    
Sbjct: 429 EKRDVF----VWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLV 484

Query: 164 EEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSAL 223
           +E    +Y+   S G       +  +++     G  EKA + +    +P+   + V  AL
Sbjct: 485 DEAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFI--EAMPIPPSTSVWGAL 542

Query: 224 VSALASHGRTSDAIIVYEEIKEAGCNLEPR 253
           + A   H   S A +    + E    LEPR
Sbjct: 543 LGACKIHANLSLAEMACTRLLE----LEPR 568



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 57/276 (20%), Positives = 117/276 (42%), Gaps = 51/276 (18%)

Query: 9   PSSASYKKLI-TYSCD---LLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           P+S ++  LI  Y+     +  +   LD+V    + +  P+  T   ++ A  E    +L
Sbjct: 94  PNSFTWNTLIRAYASGPDPVCSIWAFLDMVSS--ESQCYPNKYTFPFLIKAAAEVSSLSL 151

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
            + ++ M     +  +     S+I       D DSA  +   +KE +++     +N+++ 
Sbjct: 152 GQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVS----WNSMIN 207

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED------IIKYYEQLKSAG 178
           G+ +K     AL + K+ME  +VK    T   ++  C+   D      +  Y E+ +   
Sbjct: 208 GFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRV-- 265

Query: 179 GQITKYVFMALINAYTTCGEFEKARQV------------------------------VLD 208
             +   +  A+++ YT CG  E A+++                              VL+
Sbjct: 266 -NVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLN 324

Query: 209 AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           A +P K      +AL+SA   +G+ ++A++V+ E++
Sbjct: 325 A-MP-KKDIVAWNALISAYEQNGKPNEALLVFHELQ 358


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 94/440 (21%), Positives = 178/440 (40%), Gaps = 22/440 (5%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P++ SY  +I       +   A++V ++M +  ++P+  T N+++    +  +     R+
Sbjct: 61  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 120

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +  H LKPN+ T+  ++S   +        +LLD++    ++P    Y+ +  G  R
Sbjct: 121 RDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSR 180

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKS---AGGQITKYV 185
             D +  L +  +  +  V     T S L++    +  +    E L+S   AG   T+ +
Sbjct: 181 NGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVI 240

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +  LIN Y   GE E A       +   +K      +AL++ L    R ++A  +  E++
Sbjct: 241 YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQ 300

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYWMDGCCRLILHCVRFKQ 300
           + G N        LI+     G+L +   +L E+ +    P+    G    I++   F +
Sbjct: 301 DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGS---IVNA--FCK 355

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS 360
                + +  L D F  D +     ++ I        P D      L++ +K   G+ PS
Sbjct: 356 NGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQ--AFILVEKMKSN-GISPS 412

Query: 361 RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420
               + L+    N   +  A  I     N  L  + +SY  +  A    GN   A  L  
Sbjct: 413 IVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQ 472

Query: 421 KMPKDDPHVRFVIQACKQTY 440
           +M K      + I++  +TY
Sbjct: 473 RMHK------YGIKSTVRTY 486



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/152 (19%), Positives = 69/152 (45%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  SY  ++   C   K+  A+ +++ M   +++P+ +  N+I+ A  E    +   
Sbjct: 339 LKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAF 398

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +  + + P+  T+  +I           A  +++ L    L+P A  YN +++  
Sbjct: 399 ILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISAC 458

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
             + ++  AL + + M +  +K   +T+  LI
Sbjct: 459 CYRGNIDKALDLQQRMHKYGIKSTVRTYHQLI 490


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 94/440 (21%), Positives = 178/440 (40%), Gaps = 22/440 (5%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P++ SY  +I       +   A++V ++M +  ++P+  T N+++    +  +     R+
Sbjct: 13  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 72

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +  H LKPN+ T+  ++S   +        +LLD++    ++P    Y+ +  G  R
Sbjct: 73  RDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSR 132

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKS---AGGQITKYV 185
             D +  L +  +  +  V     T S L++    +  +    E L+S   AG   T+ +
Sbjct: 133 NGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVI 192

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +  LIN Y   GE E A       +   +K      +AL++ L    R ++A  +  E++
Sbjct: 193 YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQ 252

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYWMDGCCRLILHCVRFKQ 300
           + G N        LI+     G+L +   +L E+ +    P+    G    I++   F +
Sbjct: 253 DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGS---IVNA--FCK 307

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS 360
                + +  L D F  D +     ++ I        P D      L++ +K   G+ PS
Sbjct: 308 NGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQ--AFILVEKMKSN-GISPS 364

Query: 361 RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420
               + L+    N   +  A  I     N  L  + +SY  +  A    GN   A  L  
Sbjct: 365 IVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQ 424

Query: 421 KMPKDDPHVRFVIQACKQTY 440
           +M K      + I++  +TY
Sbjct: 425 RMHK------YGIKSTVRTY 438



 Score = 43.1 bits (100), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 29/152 (19%), Positives = 69/152 (45%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  SY  ++   C   K+  A+ +++ M   +++P+ +  N+I+ A  E    +   
Sbjct: 291 LKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAF 350

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +  + + P+  T+  +I           A  +++ L    L+P A  YN +++  
Sbjct: 351 ILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISAC 410

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
             + ++  AL + + M +  +K   +T+  LI
Sbjct: 411 CYRGNIDKALDLQQRMHKYGIKSTVRTYHQLI 442


>gi|147771209|emb|CAN67545.1| hypothetical protein VITISV_030949 [Vitis vinifera]
          Length = 598

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/283 (21%), Positives = 129/283 (45%), Gaps = 22/283 (7%)

Query: 15  KKLITYSCDLL------KVHVALDVVEQMVQG----ELVPSTETINSILHACEESYEFNL 64
           K ++T +C +       + H  + +  +++ G     + P+  T+  ++  C E   F++
Sbjct: 105 KTIVTVNCMISGFVKNKRFHAGVGLFNRVLGGGFDLRVKPNYVTLVILISGCVEFGRFSI 164

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
              ++   C  +L   +E   ++I L  + +  D+A  L  +    +L+     +N ++A
Sbjct: 165 GNSLHSYCCKTSLDLKNEVRNALIHLYAEFEYMDAAAKLFHETNVRDLVS----WNTMIA 220

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQI 181
           GY +  D + A  + +EM   NV+ D  +   LI  C+N  D+      +  +K +G ++
Sbjct: 221 GYAKNNDCRNAFSLFREMRIGNVECDRVSLVSLISACTNXRDLHMGKAVHAFIKVSGMEM 280

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
             +   ALIN Y+ CG  E  R+V  + A+  + S     ++++      G   +A+ ++
Sbjct: 281 MIHFETALINMYSKCGSIELGRKVFDELADENIASW----NSMIYGYVECGFNIEALSLW 336

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY 283
             I+      +   ++ LI    S G+L++ IQ+   +   D+
Sbjct: 337 NVIQSRKIKPDEVTMLGLISACRSSGDLHQGIQINSYIESSDH 379


>gi|9758456|dbj|BAB08985.1| membrane-associated salt-inducible protein-like [Arabidopsis
           thaliana]
          Length = 949

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 73/385 (18%), Positives = 160/385 (41%), Gaps = 54/385 (14%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
            L V +++ +    P+  T   +++   +  + +    +  ++    +K N +T+  MI+
Sbjct: 468 GLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMIN 527

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
             VK+KD+ +A+++ +D+ +  + P   +YN I++ +    ++  A+  +KEM++   +P
Sbjct: 528 GFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRP 587

Query: 150 DSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
            ++TF  +IH  +   D+   ++ ++ ++  G   T + F  LIN     G  EK + V 
Sbjct: 588 TTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLIN-----GLVEKRQAVE 642

Query: 207 LDAEIP---VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
           +  E+    V +     + ++   AS G T  A   +  ++  G +++     AL++   
Sbjct: 643 ILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACC 702

Query: 264 SEGELNRLIQLLEEVHDPDYWMDGCCRLIL--HCVRFKQLSSATDLLKQLKDKFKDDEMA 321
             G +   + + +E+   +   +     IL     R   +  A DL++Q+K +       
Sbjct: 703 KSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKE------- 755

Query: 322 MEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAH 381
                                             G+ P        + AC  A D+ RA 
Sbjct: 756 ----------------------------------GVKPDIHTYTSFISACSKAGDMNRAT 781

Query: 382 LIWKEYENAGLPYNVLSYLWMYKAF 406
              +E E  G+  N+ +Y  + K +
Sbjct: 782 QTIEEMEALGVKPNIKTYTTLIKGW 806



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 87/454 (19%), Positives = 188/454 (41%), Gaps = 42/454 (9%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           PS   +  ++ +      +H A +  E+M    + P++    S++HA     + +     
Sbjct: 307 PSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALSC 366

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    ++ +  T+  ++    K    ++A    D+ K ++    AS+Y  I+  + +
Sbjct: 367 VRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQ 426

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYV 185
             +++ A  +++EME+  +      +  ++      ++E+  +  +++LK  G   T   
Sbjct: 427 TCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVT 486

Query: 186 FMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +  LIN YT  G+  KA +V  +  E  VK   +  S +++        ++A  V+E++ 
Sbjct: 487 YGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMV 546

Query: 245 EAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEV----HDP----------DYWMDGC 288
           + G  ++P  ++   +I      G ++R IQ ++E+    H P           Y   G 
Sbjct: 547 KEG--MKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGD 604

Query: 289 CR-------LILHCVRFKQLSSATDLLKQLKDKFKD----DEM------AMEYHFSEIFC 331
            R       ++  C     + +   L+  L +K +     DEM      A E+ +++I  
Sbjct: 605 MRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQAVEILDEMTLAGVSANEHTYTKIMQ 664

Query: 332 QIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAG 391
             A+    D     +    +++E GL       + LL AC  +  ++ A  + KE     
Sbjct: 665 GYASVG--DTGKAFEYFTRLQNE-GLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARN 721

Query: 392 LPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKD 425
           +P N   Y  +   +   G+   A+ L+ +M K+
Sbjct: 722 IPRNSFVYNILIDGWARRGDVWEAADLIQQMKKE 755



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 109/280 (38%), Gaps = 42/280 (15%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P    Y  +I+  C +  +  A+  V++M +    P+T T   I+H   +S +     
Sbjct: 550 MKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSL 609

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++ M+      P   TF  +I+  V+ +    A  +LD++    +      Y  IM GY
Sbjct: 610 EVFDMMRRCGCVPTVHTFNGLINGLVEKRQ---AVEILDEMTLAGVSANEHTYTKIMQGY 666

Query: 127 FRKKD-----------------------------------VQGALMVLKEMEQANVKPDS 151
               D                                   +Q AL V KEM   N+  +S
Sbjct: 667 ASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNS 726

Query: 152 QTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
             ++ LI   +   D+ +     +Q+K  G +   + + + I+A +  G+  +A Q + +
Sbjct: 727 FVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEE 786

Query: 209 AE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
            E + VK   +  + L+   A       A+  YEE+K  G
Sbjct: 787 MEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMG 826



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/159 (19%), Positives = 69/159 (43%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y+ L+   C   ++  AL V ++M    +  ++   N ++       +      +   +
Sbjct: 693 TYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQM 752

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               +KP+  T+ S IS   K  D + A   +++++ + + P    Y  ++ G+ R    
Sbjct: 753 KKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLP 812

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY 171
           + AL   +EM+   +KPD   +  L+ +  +   I + Y
Sbjct: 813 EKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRASIAEAY 851



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 34/203 (16%), Positives = 88/203 (43%), Gaps = 8/203 (3%)

Query: 78  KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALM 137
           KP+   F  M+    +  D   A    + ++   + PT+ +Y +++  Y   +D+  AL 
Sbjct: 306 KPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALS 365

Query: 138 VLKEMEQANVKPDSQTFSYLIHNCS---NEEDIIKYYEQLKSAGGQITKYVFMALINAYT 194
            +++M++  ++    T+S ++   S   + E    ++++ K     +   ++  +I A+ 
Sbjct: 366 CVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHC 425

Query: 195 TCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPR 253
                E+A  +V +  E  + +   +   ++            ++V++ +KE  C   P 
Sbjct: 426 QTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKE--CGFTPT 483

Query: 254 AVI--ALIEHLNSEGELNRLIQL 274
            V    LI      G++++ +++
Sbjct: 484 VVTYGCLINLYTKVGKISKALEV 506


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 117/264 (44%), Gaps = 19/264 (7%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQG---ELVPSTETINSILHACEESY 60
           +L  TP   SY  LI   C   K   AL+++  M         P+  + N+++    +  
Sbjct: 155 ELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVIDGFFKEG 214

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           E +    ++  +    L P+  T+ S+I    K +  D A ++L  + +  +MP    YN
Sbjct: 215 EVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYN 274

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH------NCSNEEDIIKYYEQL 174
            ++ GY     ++ A+ +LK+M  + ++PD  T+S LI        C+    +   ++ +
Sbjct: 275 IMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSV---FDSM 331

Query: 175 KSAGGQITKYVFMALINAYTTCGEFEKARQVV---LDAEIPVKSRSEVKSALVSALASHG 231
              G +    ++  L++ Y T G     R ++   +   IP + R+   + L+ A A HG
Sbjct: 332 VRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRA--FNILICAYAKHG 389

Query: 232 RTSDAIIVYEEIKEAGCNLEPRAV 255
               A+  + E+++ G  L P  V
Sbjct: 390 AVDKAMTAFTEMRQNG--LRPDVV 411



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/328 (19%), Positives = 140/328 (42%), Gaps = 43/328 (13%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSIL-HACEESYEFNLV 65
           ++P+  S+  LI   C + +     ++  +M+   + P    +N+I+ + C+E       
Sbjct: 441 LSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVE-A 499

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           +  + M+ H  +KP+  ++ ++I     +   D +   LD +  + L P +  YN+++ G
Sbjct: 500 QDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNG 559

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQIT 182
           YF+   V+ AL + +EM + +VK  + T + ++H       I+   + Y ++   G Q+ 
Sbjct: 560 YFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVDRGTQLR 619

Query: 183 KYVFMALINAY--TTC-------------GEFE---KARQVVLDAEIPVKSRSEVKSALV 224
              +  ++      +C              EFE   +   +V++A + V    E KS L 
Sbjct: 620 IETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRIDEAKS-LF 678

Query: 225 SALASHGRTSDAI----IVYEEIKEA---------------GCNLEPRAVIALIEHLNSE 265
           SA+   G   D I    ++   I+E                GC  +   +  ++  L  +
Sbjct: 679 SAMVLRGPVPDVITYSLMIKSHIEEGLLEESDNLFLSMEKNGCAADSHMLNIIVRRLLEK 738

Query: 266 GELNRLIQLLEEVHDPDYWMDGCCRLIL 293
           G++ R    L ++ + ++ ++     +L
Sbjct: 739 GDVRRAGTYLTKIDEKNFSLEASTAALL 766



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 48/267 (17%), Positives = 107/267 (40%), Gaps = 4/267 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   SY  +I   C   +V  A+    QMV   L P+  +  S++H      E+  V 
Sbjct: 406 LRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVE 465

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   + +  + P++    +++    K      A    D +  + + P    YN ++ GY
Sbjct: 466 ELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGY 525

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
                +  ++  L  M    ++PDS T++ L++        ED +  Y ++     +   
Sbjct: 526 CFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCA 585

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
                +++     G    AR++ +   +   + R E  + ++  L  +    +A+ ++E+
Sbjct: 586 ITSNIMLHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFED 645

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELN 269
           ++     L+ R    +I  L   G ++
Sbjct: 646 LRSKEFELDVRTFSIVINALLKVGRID 672



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 52/286 (18%), Positives = 105/286 (36%), Gaps = 43/286 (15%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  LI Y C + +   A  V + MV+    P++   + +LH          VR
Sbjct: 301 LQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVR 360

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +  ++    +      F                                   N ++  Y
Sbjct: 361 DLLDLMIRDGIPFEHRAF-----------------------------------NILICAY 385

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITK 183
            +   V  A+    EM Q  ++PD  ++S +IH        ED + ++ Q+ S G     
Sbjct: 386 AKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNI 445

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             F +LI+   + GE++K  ++  +     +   +   + ++  L   GR  +A   ++ 
Sbjct: 446 ISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDM 505

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYW 284
           +   G   +  +   LI+     G+++  I+ L+ +      PD W
Sbjct: 506 VIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSW 551


>gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313772|gb|EFH44195.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 817

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 68/316 (21%), Positives = 140/316 (44%), Gaps = 10/316 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           ++P       LI+  C   K   A+++  + +    +  T+T N++LH   E+ +     
Sbjct: 458 MSPGGGLLTTLISGLCKHGKHSKAVELWLKFLNKGFLVDTKTSNALLHGLCEAGKLEEGF 517

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           RI   I       +  ++ ++IS     K  D A+  +D++ +  L P    Y+ ++ G 
Sbjct: 518 RIQKEILGRGFVMDRVSYNTLISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGL 577

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITK 183
                V+ A+    + ++  + PD  T+S +I  C      E+  K ++++ S   Q   
Sbjct: 578 LNMNKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNT 637

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
            V+  LI AY   G    A ++  D +   +   S   ++L+  ++   R  +A ++ EE
Sbjct: 638 VVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLLEE 697

Query: 243 IKEAGCNLEPRAV--IALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL--HCVRF 298
           ++  G  LEP      ALI+     G++ ++  LL E+H  +   +     ++     R 
Sbjct: 698 MRMEG--LEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARD 755

Query: 299 KQLSSATDLLKQLKDK 314
             ++ A+ LL ++++K
Sbjct: 756 GNVTEASRLLHEMREK 771



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 86/427 (20%), Positives = 175/427 (40%), Gaps = 22/427 (5%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           ++P    +   I   C   KV  A+++  +M +  +VP+  T N+++     S  ++   
Sbjct: 248 VSPDVYLFTTAINAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAF 307

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
                +    ++P   T+  ++    K K    AY +L ++ E    P   +YN ++   
Sbjct: 308 MFKEKMVERGVEPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSL 367

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-C-SNEEDII-KYYEQLKSAGGQITK 183
                +  A+ +   M    +   S T++ LI   C S + DI  +  +++ S G  + +
Sbjct: 368 IEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEMLSIGFNVNQ 427

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRS---EVKSALVSALASHGRTSDAIIVY 240
             F ++I    +   F+ A + V   E+ +++ S    + + L+S L  HG+ S A+ ++
Sbjct: 428 GSFTSVICLLCSHHMFDSALRFV--GEMLLRNMSPGGGLLTTLISGLCKHGKHSKAVELW 485

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRF 298
            +    G  ++ +   AL+  L   G+L    ++ +E+    + MD      LI  C   
Sbjct: 486 LKFLNKGFLVDTKTSNALLHGLCEAGKLEEGFRIQKEILGRGFVMDRVSYNTLISGCCGN 545

Query: 299 KQLSSATDLLKQL-KDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKD--EL 355
           K+L  A   + ++ K   K D     Y +S +   +   +  +     + +QF  D    
Sbjct: 546 KKLDEAFMFMDEMVKKGLKPD----NYTYSILIRGLLNMNKVE-----EAIQFWGDCKRN 596

Query: 356 GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSA 415
           G+ P       ++  C  A   +    ++ E  +  L  N + Y  +  A+  SG    A
Sbjct: 597 GMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMA 656

Query: 416 SKLLSKM 422
            +L   M
Sbjct: 657 LELREDM 663



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 73/166 (43%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P++  Y  LI   C   ++ +AL++ E M    + P++ T  S++            +
Sbjct: 633 LQPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAK 692

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +    L+PN   + ++I    K+        LL ++   N+ P    Y  ++ GY
Sbjct: 693 LLLEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGY 752

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE 172
            R  +V  A  +L EM +  + PDS T+   I+    +  +++ ++
Sbjct: 753 ARDGNVTEASRLLHEMREKGIVPDSITYKEFIYGYLKQGGVLQAFK 798



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/236 (20%), Positives = 97/236 (41%), Gaps = 5/236 (2%)

Query: 28  HVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSM 87
           ++ALDV   +    + PS  T N +L +   + EF      + ++C   + P+   F + 
Sbjct: 200 YLALDVFPVLANKGMFPSKTTCNILLTSLVRATEFQKCCEAFHVVC-KGVSPDVYLFTTA 258

Query: 88  ISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANV 147
           I+   K    + A  L   ++E  ++P    YN ++ G         A M  ++M +  V
Sbjct: 259 INAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGV 318

Query: 148 KPDSQTFSYLIHNCSNEEDIIKYY---EQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204
           +P   T+S L+   +  + I   Y   +++   G      V+  LI++    G   KA +
Sbjct: 319 EPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIE 378

Query: 205 VV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALI 259
           +  L     +   S   + L+      G+   A  + +E+   G N+   +  ++I
Sbjct: 379 IKDLMVSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEMLSIGFNVNQGSFTSVI 434



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/207 (18%), Positives = 90/207 (43%), Gaps = 3/207 (1%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
            K  + P + +Y  LI    ++ KV  A+       +  ++P   T + ++  C ++   
Sbjct: 559 VKKGLKPDNYTYSILIRGLLNMNKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERT 618

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
              ++++  +  +NL+PN+  +  +I    +      A  L +D+K   + P ++ Y ++
Sbjct: 619 EEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATYTSL 678

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY---YEQLKSAGG 179
           + G      V+ A ++L+EM    ++P+   ++ LI        ++K      ++ S   
Sbjct: 679 IKGMSIISRVEEAKLLLEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNV 738

Query: 180 QITKYVFMALINAYTTCGEFEKARQVV 206
              K  +  +I  Y   G   +A +++
Sbjct: 739 HPNKITYTVMIGGYARDGNVTEASRLL 765


>gi|356519757|ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [Glycine max]
          Length = 871

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 85/417 (20%), Positives = 161/417 (38%), Gaps = 76/417 (18%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           PS+ ++  +I   C   +V V   ++  M +    P   T N +++AC       +    
Sbjct: 245 PSNLTFNAMICGFCRQHRVVVGESLLHLMPKFMCSPDVVTFNILINACCIGGRTWVAIDW 304

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
             ++    ++P+  TF +++    +  +   A  L D +++M + P A++YN +M GYF+
Sbjct: 305 LHLMVRSGVEPSVATFTTILHALCREGNVVEARKLFDGIQDMGIAPNAAIYNTLMDGYFK 364

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITKYV 185
            ++V  A ++ +EM    V PD  TF+ L+   +     ED  +  + L  +G       
Sbjct: 365 AREVAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIEDSDRLLKDLIVSG------- 417

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
                              + LD        S +   +VS+L   GR  +A+ + +E+ E
Sbjct: 418 -------------------LFLD--------SSLYDVMVSSLCWAGRLDEAMKLLQELLE 450

Query: 246 AGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSAT 305
            G  L   A  +LI   +  G        LE+     Y      R+++ C      S+  
Sbjct: 451 KGLTLSVVAFNSLIGAYSRAG--------LEDKAFEAY------RIMVRCGFTPSSSTCN 496

Query: 306 DLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLD 365
            LL  L  K    E                           +L +   E G P ++    
Sbjct: 497 SLLMGLCRKGWLQEA-------------------------RILLYRMLEKGFPINKVAYT 531

Query: 366 FLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
            LL       +L+ A  +WKE +  G+  + +++  +      +GN + A ++  +M
Sbjct: 532 VLLDGYFKMNNLEGAQFLWKEMKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEM 588



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 122/267 (45%), Gaps = 16/267 (5%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEF 62
           K   +P   ++  LI   C   +  VA+D +  MV+  + PS  T  +ILHA C E    
Sbjct: 275 KFMCSPDVVTFNILINACCIGGRTWVAIDWLHLMVRSGVEPSVATFTTILHALCREG--- 331

Query: 63  NLV--RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           N+V  R+++  I    + PN+  + +++    K ++   A  L ++++   + P    +N
Sbjct: 332 NVVEARKLFDGIQDMGIAPNAAIYNTLMDGYFKAREVAQASLLYEEMRTTGVSPDCVTFN 391

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSA 177
            ++ G+++   ++ +  +LK++  + +  DS  +  ++ +       ++ +K  ++L   
Sbjct: 392 ILVWGHYKYGRIEDSDRLLKDLIVSGLFLDSSLYDVMVSSLCWAGRLDEAMKLLQELLEK 451

Query: 178 GGQITKYVFMALINAYTTCG----EFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRT 233
           G  ++   F +LI AY+  G     FE  R +V     P    S   ++L+  L   G  
Sbjct: 452 GLTLSVVAFNSLIGAYSRAGLEDKAFEAYRIMVRCGFTP---SSSTCNSLLMGLCRKGWL 508

Query: 234 SDAIIVYEEIKEAGCNLEPRAVIALIE 260
            +A I+   + E G  +   A   L++
Sbjct: 509 QEARILLYRMLEKGFPINKVAYTVLLD 535



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 1/165 (0%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           + +   P++ +Y  LI   CD  +V  AL + ++M Q  L+  T T N I+       + 
Sbjct: 589 SAIGFVPNNFAYNSLIRGLCDCGRVTEALKLEKEMRQKGLLSDTFTFNIIIDGFCRRGQM 648

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
                 +  +    L P+  TF  +I    K  D   A  +++ +    L P  + YN  
Sbjct: 649 KFAIETFLDMQRIGLLPDIFTFNILIGGYCKAFDMVGAGEIVNKMYSCGLDPDITTYNTY 708

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEED 166
           M GY R + +  A+++L ++  A + PD+ T++ ++   CS+  D
Sbjct: 709 MHGYCRMRKMNQAVIILDQLISAGIVPDTVTYNTMLSGICSDILD 753



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/316 (19%), Positives = 137/316 (43%), Gaps = 24/316 (7%)

Query: 11  SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYP 70
           S+ Y  +++  C   ++  A+ +++++++  L  S    NS++ A   +   +     Y 
Sbjct: 422 SSLYDVMVSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDKAFEAYR 481

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
           ++      P+S T  S++    +      A  LL  + E         Y  ++ GYF+  
Sbjct: 482 IMVRCGFTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLLDGYFKMN 541

Query: 131 DVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKYVFM 187
           +++GA  + KEM++  + PD+  F+ LI   S   ++ + YE   ++ + G     + + 
Sbjct: 542 NLEGAQFLWKEMKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYN 601

Query: 188 ALINAYTTCGEFEKARQVVLDAEIPVK---SRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +LI     CG   +A +  L+ E+  K   S +   + ++      G+   AI  + +++
Sbjct: 602 SLIRGLCDCGRVTEALK--LEKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQ 659

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDY-----WMDGCCRLILHC 295
             G   +      LI       ++    +++ +++    DPD      +M G CR+    
Sbjct: 660 RIGLLPDIFTFNILIGGYCKAFDMVGAGEIVNKMYSCGLDPDITTYNTYMHGYCRM---- 715

Query: 296 VRFKQLSSATDLLKQL 311
              ++++ A  +L QL
Sbjct: 716 ---RKMNQAVIILDQL 728


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 87/386 (22%), Positives = 162/386 (41%), Gaps = 32/386 (8%)

Query: 51  SILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEM 110
           SIL+AC  S      + I+  I       + +   ++IS+  +  D   A  L   + + 
Sbjct: 335 SILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKR 394

Query: 111 NLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE---DI 167
           +L+     +NAI+AGY R++D   A+ + K+M+   VKP   TF +L+  C+N     D 
Sbjct: 395 DLIS----WNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADG 450

Query: 168 IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSA 226
              +E +  +G +   ++  AL+N Y  CG   +A+ V        ++R  +  +++++ 
Sbjct: 451 KMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEG----TQARDVISWNSMIAG 506

Query: 227 LASHGRTSDAIIVYEEIKEAGCNLEPRAVI---ALIEHLNSEG-ELNRLI--QLLEEVHD 280
            A HG    A  +++E++     LEP  +     L    N E  EL + I  ++ E    
Sbjct: 507 HAQHGSYETAYKLFQEMQNE--ELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQ 564

Query: 281 PDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPD 340
            D  +     LI   +R   L  A ++   L+ +   D M+               D  +
Sbjct: 565 LDVNLGNA--LINMYIRCGSLQDARNVFHSLQHR---DVMSWTAMIG------GCADQGE 613

Query: 341 VQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYL 400
               ++L   +++E G  P +     +L  C ++  L     +     N+G   +     
Sbjct: 614 DMKAIELFWQMQNE-GFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGN 672

Query: 401 WMYKAFLASGNRKSASKLLSKMPKDD 426
            +  A+  SG+   A ++  KMP  D
Sbjct: 673 ALISAYSKSGSMTDAREVFDKMPSRD 698



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/222 (20%), Positives = 104/222 (46%), Gaps = 12/222 (5%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+ + +QM    + P   T   +L AC  S  +   + I+  I    +K N     ++++
Sbjct: 415 AMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMN 474

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  +      A ++ +  +  +++     +N+++AG+ +    + A  + +EM+   ++P
Sbjct: 475 MYRRCGSLMEAQNVFEGTQARDVIS----WNSMIAGHAQHGSYETAYKLFQEMQNEELEP 530

Query: 150 DSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D+ TF+ ++  C N E +    + + ++  +G Q+   +  ALIN Y  CG  + AR V 
Sbjct: 531 DNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVF 590

Query: 207 LDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAG 247
                 ++ R  +  +A++   A  G    AI ++ +++  G
Sbjct: 591 HS----LQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEG 628



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 12/224 (5%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+ K+I           A++   QM + ++VP+  +  S+L+AC         +R++  I
Sbjct: 701 SWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEI 760

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               L+ +     ++IS+  K      A  + D++ E N++     +NA++  Y +    
Sbjct: 761 VKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVV----TWNAMINAYAQHGLA 816

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINA 192
             AL     ME+  +KPD  TF+ ++  C++   +++ Y+   S     ++Y  +  I  
Sbjct: 817 SKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSS---MESEYGVLPTIEH 873

Query: 193 YTT-CGEFEKARQV----VLDAEIPVKSRSEVKSALVSALASHG 231
           Y    G   +AR+      L  ++P    + V   L+ A   HG
Sbjct: 874 YGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHG 917



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/311 (20%), Positives = 130/311 (41%), Gaps = 25/311 (8%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +I    D  +   A+++  QM      P   T +SIL  C  S   +  +++   I
Sbjct: 600 SWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYI 659

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
            +   + ++    ++IS   K      A  + D +   +++     +N I+AGY +    
Sbjct: 660 LNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVS----WNKIIAGYAQNGLG 715

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK-------YV 185
           Q A+    +M++ +V P+  +F  L++ CS+        E+ K    +I K        V
Sbjct: 716 QTAVEFAYQMQEQDVVPNKFSFVSLLNACSS----FSALEEGKRVHAEIVKRKLQGDVRV 771

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
             ALI+ Y  CG   +A++V  +    ++      +A+++A A HG  S A+  +  +++
Sbjct: 772 GAALISMYAKCGSQGEAQEVFDNI---IEKNVVTWNAMINAYAQHGLASKALGFFNCMEK 828

Query: 246 AGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD-----PDYWMDGCCRLILHCVRFKQ 300
            G   +     +++   N  G +    Q+   +       P     GC   +L   R ++
Sbjct: 829 EGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLG--RARR 886

Query: 301 LSSATDLLKQL 311
              A  L+ Q+
Sbjct: 887 FQEAETLINQM 897



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 83/376 (22%), Positives = 152/376 (40%), Gaps = 32/376 (8%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A  + E+M     +P+  T  SIL AC    E    ++I+  I     + +     S++S
Sbjct: 112 AFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLS 171

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K  D   A  +   +   +++     YN ++  Y +K  V+  L +  +M    + P
Sbjct: 172 MYGKCGDLPRARQVFAGISPRDVVS----YNTMLGLYAQKAYVKECLGLFGQMSSEGISP 227

Query: 150 DSQTFSYLIHNCSNEE--DIIKYYEQLKSAGGQITKY-VFMALINAYTTCGEFEKARQV- 205
           D  T+  L+   +     D  K   +L    G  +   V  AL+     CG+ + A+Q  
Sbjct: 228 DKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAF 287

Query: 206 --VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
               D ++       V +AL++ALA HG   +A   Y  ++  G  L     ++++   +
Sbjct: 288 KGTADRDVV------VYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACS 341

Query: 264 SEG--ELNRLI--QLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDE 319
           +    E  +LI   + E+ H  D  +     LI    R   L  A +L   +    K D 
Sbjct: 342 TSKALEAGKLIHSHISEDGHSSDVQIGNA--LISMYARCGDLPKARELFYTMP---KRDL 396

Query: 320 MAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKR 379
           ++    ++ I    A  +  D    + L + ++ E G+ P R     LL AC N+     
Sbjct: 397 IS----WNAIIAGYARRE--DRGEAMRLYKQMQSE-GVKPGRVTFLHLLSACANSSAYAD 449

Query: 380 AHLIWKEYENAGLPYN 395
             +I ++   +G+  N
Sbjct: 450 GKMIHEDILRSGIKSN 465



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/199 (20%), Positives = 88/199 (44%), Gaps = 13/199 (6%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +I           A  + ++M   EL P   T  S+L  C+      L ++I+  I
Sbjct: 499 SWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRI 558

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               L+ +     ++I++ ++      A ++   L+  ++M     + A++ G   + + 
Sbjct: 559 TESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMS----WTAMIGGCADQGED 614

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNE------EDIIKYYEQLKSAGGQITKYVF 186
             A+ +  +M+    +P   TFS ++  C++       + +I Y   + ++G ++   V 
Sbjct: 615 MKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAY---ILNSGYELDTGVG 671

Query: 187 MALINAYTTCGEFEKARQV 205
            ALI+AY+  G    AR+V
Sbjct: 672 NALISAYSKSGSMTDAREV 690



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 77/387 (19%), Positives = 157/387 (40%), Gaps = 28/387 (7%)

Query: 48  TINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL 107
           T  ++L  C         +RI+  +    + P+      +I++ VK +    A+ +  ++
Sbjct: 29  TYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEM 88

Query: 108 KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNE 164
              +++   S+ +      F+KK    A  + +EM+ A   P+  T+  ++  C   +  
Sbjct: 89  PRRDVISWNSLISCYAQQGFKKK----AFQLFEEMQNAGFIPNKITYISILTACYSPAEL 144

Query: 165 EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SAL 223
           E+  K + Q+  AG Q    V  +L++ Y  CG+  +ARQV       +  R  V  + +
Sbjct: 145 ENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAG----ISPRDVVSYNTM 200

Query: 224 VSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN---RLIQL-LEEVH 279
           +   A      + + ++ ++   G + +    I L++   +   L+   R+ +L +EE  
Sbjct: 201 LGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGL 260

Query: 280 DPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPP 339
           + D  +     L+  CVR   + SA    K   D+   D +     ++ +   +A     
Sbjct: 261 NSDIRVG--TALVTMCVRCGDVDSAKQAFKGTADR---DVVV----YNALIAALA-QHGH 310

Query: 340 DVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSY 399
           +V+      +   D  G+  +R     +L AC  ++ L+   LI       G   +V   
Sbjct: 311 NVEAFEQYYRMRSD--GVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIG 368

Query: 400 LWMYKAFLASGNRKSASKLLSKMPKDD 426
             +   +   G+   A +L   MPK D
Sbjct: 369 NALISMYARCGDLPKARELFYTMPKRD 395



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 44/239 (18%), Positives = 96/239 (40%), Gaps = 12/239 (5%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           SY  ++        V   L +  QM    + P   T  ++L A       +  +RI+ + 
Sbjct: 196 SYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLT 255

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               L  +     +++++ V+  D DSA        + +++    +YNA++A   +    
Sbjct: 256 VEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVV----VYNALIAALAQHGHN 311

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMAL 189
             A      M    V  +  T+  +++ CS  + +      +  +   G      +  AL
Sbjct: 312 VEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNAL 371

Query: 190 INAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAG 247
           I+ Y  CG+  KAR++       +  R  +  +A+++  A      +A+ +Y++++  G
Sbjct: 372 ISMYARCGDLPKARELFY----TMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEG 426


>gi|307105412|gb|EFN53661.1| hypothetical protein CHLNCDRAFT_58444 [Chlorella variabilis]
          Length = 1131

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 93/193 (48%), Gaps = 3/193 (1%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  LI       +   AL V+EQM +  + P T T N+++ AC  S ++    R+Y  +
Sbjct: 363 TYNTLIDVYGKSGQWEEALAVLEQMKRERIQPVTRTFNTLMIACNTSNQWQEALRVYEQM 422

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
              +  PN+ T+ ++IS + K  D     ++  ++ +     +   Y+++++   +  + 
Sbjct: 423 AASSHPPNTTTYNALISAHSKGGDLPKVLAVFKEMVQKGCERSVITYSSLISACEKAGEW 482

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMAL 189
           + AL + +EM      P+  +++ LI  C+     E   + +EQ++  G +     + AL
Sbjct: 483 KLALQLFEEMRGEGCVPNVISYNSLITACAQGAQWEKAAEVFEQMQRQGCRPDVVSYTAL 542

Query: 190 INAYTTCGEFEKA 202
           I AY   G++ +A
Sbjct: 543 IQAYERGGQWRRA 555



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/254 (21%), Positives = 119/254 (46%), Gaps = 6/254 (2%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+ + E+M    +  +  T +++++ C +  ++ L   +Y  +       N  T+ ++I 
Sbjct: 310 AMALAEEMRDRGIERNVHTFSALMNVCIKCGQYKLALDVYRDMQAAGCPANVVTYNTLID 369

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K   ++ A ++L+ +K   + P    +N +M         Q AL V ++M  ++  P
Sbjct: 370 VYGKSGQWEEALAVLEQMKRERIQPVTRTFNTLMIACNTSNQWQEALRVYEQMAASSHPP 429

Query: 150 DSQTFSYLIHNCSNEED---IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           ++ T++ LI   S   D   ++  ++++   G + +   + +LI+A    GE++ A Q+ 
Sbjct: 430 NTTTYNALISAHSKGGDLPKVLAVFKEMVQKGCERSVITYSSLISACEKAGEWKLALQLF 489

Query: 207 --LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
             +  E  V +     S L++A A   +   A  V+E+++  GC  +  +  ALI+    
Sbjct: 490 EEMRGEGCVPNVISYNS-LITACAQGAQWEKAAEVFEQMQRQGCRPDVVSYTALIQAYER 548

Query: 265 EGELNRLIQLLEEV 278
            G+  R +   EE+
Sbjct: 549 GGQWRRALAAFEEM 562



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 121/272 (44%), Gaps = 33/272 (12%)

Query: 62  FNLVRRIYPMICHHNLKP--NSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMY 119
           F+L+RR+ P      L P  +  TF SMIS  V  +D   A +L +++++  +      +
Sbjct: 273 FDLLRRLGP---GSPLAPLLDEFTFTSMISNCVAQQDLGRAMALAEEMRDRGIERNVHTF 329

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKS 176
           +A+M    +    + AL V ++M+ A    +  T++ LI         E+ +   EQ+K 
Sbjct: 330 SALMNVCIKCGQYKLALDVYRDMQAAGCPANVVTYNTLIDVYGKSGQWEEALAVLEQMKR 389

Query: 177 AGGQITKYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGR 232
              Q     F  L+ A  T  ++++A     Q+   +  P    +   +AL+SA +  G 
Sbjct: 390 ERIQPVTRTFNTLMIACNTSNQWQEALRVYEQMAASSHPP---NTTTYNALISAHSKGGD 446

Query: 233 TSDAIIVYEEIKEAGCNLEPRAVI---ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC 289
               + V++E+ + GC    R+VI   +LI      GE    +QL EE+       +GC 
Sbjct: 447 LPKVLAVFKEMVQKGCE---RSVITYSSLISACEKAGEWKLALQLFEEMRG-----EGCV 498

Query: 290 -------RLILHCVRFKQLSSATDLLKQLKDK 314
                   LI  C +  Q   A ++ +Q++ +
Sbjct: 499 PNVISYNSLITACAQGAQWEKAAEVFEQMQRQ 530



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 99/205 (48%), Gaps = 4/205 (1%)

Query: 48  TINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL 107
           T  S++  C    +      +   +    ++ N  TF +++++ +K   +  A  +  D+
Sbjct: 293 TFTSMISNCVAQQDLGRAMALAEEMRDRGIERNVHTFSALMNVCIKCGQYKLALDVYRDM 352

Query: 108 KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC--SNE- 164
           +          YN ++  Y +    + AL VL++M++  ++P ++TF+ L+  C  SN+ 
Sbjct: 353 QAAGCPANVVTYNTLIDVYGKSGQWEEALAVLEQMKRERIQPVTRTFNTLMIACNTSNQW 412

Query: 165 EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SAL 223
           ++ ++ YEQ+ ++        + ALI+A++  G+  K   V  +       RS +  S+L
Sbjct: 413 QEALRVYEQMAASSHPPNTTTYNALISAHSKGGDLPKVLAVFKEMVQKGCERSVITYSSL 472

Query: 224 VSALASHGRTSDAIIVYEEIKEAGC 248
           +SA    G    A+ ++EE++  GC
Sbjct: 473 ISACEKAGEWKLALQLFEEMRGEGC 497



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 75/154 (48%), Gaps = 7/154 (4%)

Query: 9   PSSASYKKLITY---SCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           P++ +Y  LI+      DL KV   L V ++MVQ     S  T +S++ ACE++ E+ L 
Sbjct: 429 PNTTTYNALISAHSKGGDLPKV---LAVFKEMVQKGCERSVITYSSLISACEKAGEWKLA 485

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            +++  +      PN  ++ S+I+   +   ++ A  + + ++     P    Y A++  
Sbjct: 486 LQLFEEMRGEGCVPNVISYNSLITACAQGAQWEKAAEVFEQMQRQGCRPDVVSYTALIQA 545

Query: 126 YFRKKDVQGALMVLKEMEQAN-VKPDSQTFSYLI 158
           Y R    + AL   +EM +A    PDS  ++ +I
Sbjct: 546 YERGGQWRRALAAFEEMIRARPCAPDSIVYNTII 579


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 93/176 (52%), Gaps = 3/176 (1%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +I P+  SY  L+   C+L  V  A  + ++M++  + P+  T N+++     S + +  
Sbjct: 495 KIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKA 554

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
                 +    + P+S T+ ++I+  VK +  D A+ L++ ++   L P    YN I+ G
Sbjct: 555 DEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNG 614

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAG 178
           + R+  +Q A ++L++M +  + PD  T++ LI+   +++++    ++++++   G
Sbjct: 615 FCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQRG 670



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/245 (19%), Positives = 101/245 (41%), Gaps = 4/245 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   ++  LI   C    +  AL +   M Q  + P   T N ++    ++ E     
Sbjct: 426 VVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKAN 485

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +    + PN  ++  +++    +     A+ L D++    + PT    N ++ GY
Sbjct: 486 ELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGY 545

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY---EQLKSAGGQITK 183
            R  D+  A   L +M    V PDS T++ LI+     E + K +    ++++ G Q   
Sbjct: 546 CRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDV 605

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             +  ++N +   G  ++A  ++    E  +       + L++   S     +A   ++E
Sbjct: 606 VTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEAFRFHDE 665

Query: 243 IKEAG 247
           + + G
Sbjct: 666 MLQRG 670



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 90/421 (21%), Positives = 164/421 (38%), Gaps = 59/421 (14%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  +I   C   +   A  V  +M+   L P T T N++L     +  F   +
Sbjct: 251 LKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAK 310

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            I+  + H  + P+  +F S+I ++ +    D A     D+K   L+P   +Y  ++ GY
Sbjct: 311 DIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGY 370

Query: 127 FR-----------------------------------KKDVQGALMVLKEMEQANVKPDS 151
            R                                   KK +  A  +  EM +  V PD 
Sbjct: 371 CRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDF 430

Query: 152 QTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK---YVFMALINAYTTCGEFEKARQV--- 205
            TF+ LIH    E ++ K          +  K     +  LI+ +    E EKA ++   
Sbjct: 431 CTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNE 490

Query: 206 VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLN 263
           ++  +I     S   + LV+   + G  S+A  +++E+   G  ++P  V    +I+   
Sbjct: 491 MISRKIFPNHIS--YAILVNGYCNLGFVSEAFRLWDEMIRKG--IKPTLVTCNTVIKGYC 546

Query: 264 SEGELNR----LIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDE 319
             G+L++    L +++ E   PD        LI   V+ + +  A  L+ +++ K    +
Sbjct: 547 RSGDLSKADEFLGKMISEGVGPDSITYNT--LINGFVKGEYMDKAFFLINKMETKGLQPD 604

Query: 320 MAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKR 379
           +         FC+       +    L L + I  E G+ P R     L+   V+  +LK 
Sbjct: 605 VVTYNVILNGFCRQGRMQEAE----LILRKMI--ERGIDPDRSTYTTLINGYVSQDNLKE 658

Query: 380 A 380
           A
Sbjct: 659 A 659



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 72/403 (17%), Positives = 165/403 (40%), Gaps = 14/403 (3%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS 86
           V +A +V  ++ +  +  +  T+N +++A  + ++ + V+     +    +  +  T+ +
Sbjct: 166 VDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNT 225

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           +I+   +      A+ +++ +    L PT   YNA++ G  +K     A  V  EM    
Sbjct: 226 LINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIG 285

Query: 147 VKPDSQTF-SYLIHNCSNEE--DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203
           + PD+ T+ + L+ +C N    +    +  +   G       F +LI   +  G  ++A 
Sbjct: 286 LSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQAL 345

Query: 204 QVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
               D +   +   + + + L++    +G  S+A+ + +++ E GC L+  A   ++  L
Sbjct: 346 MYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGL 405

Query: 263 NSEGELNRLIQLLEEVHDPDYWMDGCCRLIL---HCVRFKQLSSATDLLKQLKDKFKDDE 319
             +  L     L +E+ +     D C    L   HC +   +  A  L   +  K    +
Sbjct: 406 CKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHC-KEGNMGKALSLFGIMTQKNIKPD 464

Query: 320 MAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKR 379
           +       + FC+    +  + ++  +++        + P+      L+    N   +  
Sbjct: 465 IVTYNILIDGFCKTTEMEKAN-ELWNEMIS-----RKIFPNHISYAILVNGYCNLGFVSE 518

Query: 380 AHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           A  +W E    G+   +++   + K +  SG+   A + L KM
Sbjct: 519 AFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKM 561



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/249 (19%), Positives = 103/249 (41%), Gaps = 6/249 (2%)

Query: 35  EQMVQGELVPSTETINSILHA-CEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVK 93
           ++MV+  +VP   T  +++H  C+E         ++ ++   N+KP+  T+  +I    K
Sbjct: 419 DEMVERGVVPDFCTFTTLIHGHCKEG-NMGKALSLFGIMTQKNIKPDIVTYNILIDGFCK 477

Query: 94  IKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQT 153
             + + A  L +++    + P    Y  ++ GY     V  A  +  EM +  +KP   T
Sbjct: 478 TTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVT 537

Query: 154 FSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAE 210
            + +I       D+ K   +  ++ S G       +  LIN +      +KA  ++   E
Sbjct: 538 CNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKME 597

Query: 211 I-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN 269
              ++      + +++     GR  +A ++  ++ E G + +      LI    S+  L 
Sbjct: 598 TKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLK 657

Query: 270 RLIQLLEEV 278
              +  +E+
Sbjct: 658 EAFRFHDEM 666



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 29/153 (18%), Positives = 71/153 (46%), Gaps = 1/153 (0%)

Query: 12  ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPM 71
            +Y  LI   C    +  A +V+  M    L P+  T N++++   +   +   + ++  
Sbjct: 221 VTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNE 280

Query: 72  ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131
           +    L P++ T+ +++  + +  +F  A  +  D+    + P    +++++    R   
Sbjct: 281 MLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGH 340

Query: 132 VQGALMVLKEMEQANVKPDSQTFSYLIHN-CSN 163
           +  ALM  ++M+ + + PD+  ++ LI+  C N
Sbjct: 341 LDQALMYFRDMKTSGLVPDNVIYTILINGYCRN 373



 Score = 42.4 bits (98), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 74/409 (18%), Positives = 158/409 (38%), Gaps = 20/409 (4%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           K++   D  + + +   + S    NS+L    +    +L   +Y  I    ++ N  T  
Sbjct: 130 KLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLN 189

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
            M++   K    D     L D+++  +      YN ++  Y R+  +  A  V+  M   
Sbjct: 190 IMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGK 249

Query: 146 NVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
            +KP   T++ +I+    +   ++    + ++ S G       +  L+        F +A
Sbjct: 250 GLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEA 309

Query: 203 RQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALI 259
           + +  D      S   +  S+L+   + +G    A++ + ++K +G  L P  VI   LI
Sbjct: 310 KDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSG--LVPDNVIYTILI 367

Query: 260 EHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDE 319
                 G ++  +++ +++ +      GC    L  V +  + +     K L D     +
Sbjct: 368 NGYCRNGMMSEALEIRDKMLE-----QGCA---LDVVAYNTILNGLCKKKLLADANALFD 419

Query: 320 MAMEYHFSEIFCQIAT---TDPPDVQIGLDLLQF-IKDELGLPPSRKCLDFLLGACVNAR 375
             +E      FC   T       +  +G  L  F I  +  + P     + L+       
Sbjct: 420 EMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTT 479

Query: 376 DLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424
           ++++A+ +W E  +  +  N +SY  +   +   G    A +L  +M +
Sbjct: 480 EMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIR 528


>gi|224063295|ref|XP_002301082.1| predicted protein [Populus trichocarpa]
 gi|222842808|gb|EEE80355.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 122/250 (48%), Gaps = 7/250 (2%)

Query: 44  PSTETINSILHACEESYEFNLVRR-IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYS 102
           PS + I++ L+   ES + +L+R  +  +   H LKPN+  F   I  + K  D +SA++
Sbjct: 152 PSLKAISTCLNLLVESKQVDLLRGFLLDLNKDHMLKPNTCIFNIFIKYHCKSGDLESAFA 211

Query: 103 LLDDLKEMNL-MPTASMYNAIMAGYFRKKDVQGALMVLKEM-EQANVKPDSQTFSYLIH- 159
           ++ ++K+ ++  P    Y+ +M G      ++ A+ + +EM  +  + PD+ T++ LI+ 
Sbjct: 212 VVKEMKKSSISYPNLITYSTLMDGLCESGRLKEAIELFEEMVSKDQILPDALTYNVLING 271

Query: 160 -NCSNEED-IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEI-PVKSR 216
            +C  + D   K  E +KS G     + + AL++ +   G  E+A     + +I  +K  
Sbjct: 272 FSCWGKVDRAKKIMEFMKSNGCSPNVFNYSALMSGFCKEGRLEEAMDAFEEMKIFGLKQD 331

Query: 217 SEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276
           +   + L++     GR  +A+ + EE+KE  C  +   V  L+     EG     + +L 
Sbjct: 332 TVGYTILINYFCRFGRIDEAMALLEEMKETKCKADIVTVNVLLRGFCGEGRTEEALGMLN 391

Query: 277 EVHDPDYWMD 286
            +     +++
Sbjct: 392 RLSSEGIYLN 401



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 127/284 (44%), Gaps = 11/284 (3%)

Query: 6   EITPSSASYKKLITYS------CDLLKVHVALDVVEQMV-QGELVPSTETINSILHACEE 58
           E+  SS SY  LITYS      C+  ++  A+++ E+MV + +++P   T N +++    
Sbjct: 215 EMKKSSISYPNLITYSTLMDGLCESGRLKEAIELFEEMVSKDQILPDALTYNVLINGFSC 274

Query: 59  SYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM 118
             + +  ++I   +  +   PN   + +++S   K    + A    +++K   L      
Sbjct: 275 WGKVDRAKKIMEFMKSNGCSPNVFNYSALMSGFCKEGRLEEAMDAFEEMKIFGLKQDTVG 334

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLK 175
           Y  ++  + R   +  A+ +L+EM++   K D  T + L+     E   E+ +    +L 
Sbjct: 335 YTILINYFCRFGRIDEAMALLEEMKETKCKADIVTVNVLLRGFCGEGRTEEALGMLNRLS 394

Query: 176 SAGGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTS 234
           S G  + K  +  ++N+    G+ +KA +++ L             + L+  L   G   
Sbjct: 395 SEGIYLNKASYRIVLNSLCQKGDLDKALELLGLTLSRGFVPHHATSNELLVGLCKAGMAD 454

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           DA++    + E G   E  +   L+E +  E +L    +LL+E+
Sbjct: 455 DAVVALYGLAEMGFKPEQDSWALLVEFVCRERKLLLAFELLDEL 498



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 110/224 (49%), Gaps = 10/224 (4%)

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL-KEMNLMPTASMYNAI 122
           +  +I P++     KP+ +   + ++L V+ K  D     L DL K+  L P   ++N  
Sbjct: 140 MFNKIQPIV---REKPSLKAISTCLNLLVESKQVDLLRGFLLDLNKDHMLKPNTCIFNIF 196

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVK-PDSQTFSYLIHNCSNE---EDIIKYYEQLKSAG 178
           +  + +  D++ A  V+KEM+++++  P+  T+S L+         ++ I+ +E++ S  
Sbjct: 197 IKYHCKSGDLESAFAVVKEMKKSSISYPNLITYSTLMDGLCESGRLKEAIELFEEMVSKD 256

Query: 179 GQIT-KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDA 236
             +     +  LIN ++  G+ ++A++++   +    S +    SAL+S     GR  +A
Sbjct: 257 QILPDALTYNVLINGFSCWGKVDRAKKIMEFMKSNGCSPNVFNYSALMSGFCKEGRLEEA 316

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           +  +EE+K  G   +      LI +    G ++  + LLEE+ +
Sbjct: 317 MDAFEEMKIFGLKQDTVGYTILINYFCRFGRIDEAMALLEEMKE 360


>gi|8778500|gb|AAF79508.1|AC002328_16 F20N2.6 [Arabidopsis thaliana]
          Length = 554

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 120/272 (44%), Gaps = 19/272 (6%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELV---PSTETINSILHACEESYEFNLV 65
           P++A    L+  +C   +  +A DVVEQ ++ +     P   + N+ILH+     ++ L+
Sbjct: 261 PTTACTFNLLICTCG--EAGLARDVVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQYKLI 318

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +Y  +      P+  T+  ++  N ++   D  Y LLD++ +    P    YN ++  
Sbjct: 319 DWVYEQMLEDGFTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNILLHH 378

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI--IKYY-EQLKSAGGQIT 182
                    AL +L  M +  V+P    F+ LI   S    +   KY+ ++    G    
Sbjct: 379 LATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTPD 438

Query: 183 KYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAII 238
              +  +I  Y + GE EKA    +++    ++P        ++++      G+  +A  
Sbjct: 439 VVCYTVMITGYISGGELEKAEEMFKEMTEKGQLP---NVFTYNSMIRGFCMAGKFKEACA 495

Query: 239 VYEEIKEAGCNLEPRAVI--ALIEHLNSEGEL 268
           + +E++  GCN  P  V+   L+ +L + G++
Sbjct: 496 LLKEMESRGCN--PNFVVYSTLVNNLKNAGKV 525



 Score = 41.6 bits (96), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 39/209 (18%), Positives = 86/209 (41%), Gaps = 11/209 (5%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYE----F 62
            TP   +Y  ++  +  L K      ++++MV+    P   T N +LH      +     
Sbjct: 330 FTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAAL 389

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           NL+  +  +     ++P    F ++I    +    ++    +D+  ++   P    Y  +
Sbjct: 390 NLLNHMREV----GVEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVM 445

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGG 179
           + GY    +++ A  + KEM +    P+  T++ +I         ++     ++++S G 
Sbjct: 446 ITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLKEMESRGC 505

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLD 208
                V+  L+N     G+  +A +VV D
Sbjct: 506 NPNFVVYSTLVNNLKNAGKVLEAHEVVKD 534


>gi|115434588|ref|NP_001042052.1| Os01g0153200 [Oryza sativa Japonica Group]
 gi|113531583|dbj|BAF03966.1| Os01g0153200 [Oryza sativa Japonica Group]
          Length = 1139

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 124/283 (43%), Gaps = 10/283 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           +  S+  Y  L+   C  ++V  A++V   MV   +     T  ++++      E  +  
Sbjct: 229 VKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMAL 288

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           RI   +      P+      MI    K +  + A+SL   L ++ ++P    YNA++   
Sbjct: 289 RITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKL 348

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITK 183
            + +    A  + KEM    ++P+  T++ LIH        ED +  +++++  G ++T 
Sbjct: 349 CKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTV 408

Query: 184 YVFMALINAYTTCGEFEKARQV----VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
           Y + +LIN Y   G  ++AR +    V +   P  +     S L++ L  +G  S  + +
Sbjct: 409 YPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAAS---YSPLIAGLCRNGDLSSCMEL 465

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPD 282
           + E+ E G         ALI     + +++   +L +++ D +
Sbjct: 466 HREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSN 508



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 90/429 (20%), Positives = 172/429 (40%), Gaps = 52/429 (12%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y  LI   C    +  A  ++  MV+  L P+  + + ++     + + +    ++  + 
Sbjct: 411 YNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMA 470

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
              +  N+ TF ++I+   K K  D A  L D + + N++P    +N ++ GY    +++
Sbjct: 471 ERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIR 530

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALI 190
            A  +  +M +  +KPD+ T+  LI        + K   +   L+++   +  +   AL+
Sbjct: 531 KAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALL 590

Query: 191 NAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVS-------ALASHGRTSDAIIVYEEI 243
             +   G F +     L  E+ V+    VK  LVS       AL  H +    ++ + E+
Sbjct: 591 YGFFREGRFTETYH--LWDEMAVRG---VKLDLVSFTIIVYAALKQHDKEKSCVL-FREM 644

Query: 244 KEAGCNLEPRAVIALIEHLNSEGE----LNRLIQLLEEVHDPDYWMDGCCRLILHCVRFK 299
           KE G   +      +I+ L+ E      LN   Q++ + + P+        LI +  +  
Sbjct: 645 KEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTV--LINNLCKSG 702

Query: 300 QLSSATDLLKQ------LKDKFK------------DDEMAMEYHFSEIFCQIATT----- 336
            L SA  L K+      L +KF             D E A + H + +   +A+      
Sbjct: 703 YLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASIVSFNI 762

Query: 337 ------DPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENA 390
                     +Q  +DL+  I  E G  P       ++       D+ +A  +W E    
Sbjct: 763 LIKGLCKAGKIQEAIDLMSKIT-ESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYK 821

Query: 391 GLPYNVLSY 399
           GL  +V++Y
Sbjct: 822 GLKPDVVAY 830



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/253 (19%), Positives = 104/253 (41%), Gaps = 4/253 (1%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           A   + P+  +Y  LI   C    +  AL + ++M    +  +    NS+++   +    
Sbjct: 365 AGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSL 424

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           +  R +   +    L P + ++  +I+   +  D  S   L  ++ E  +      + A+
Sbjct: 425 DRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTAL 484

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGG 179
           + G+ + K +  A  +  +M  +NV P+  TF+ +I       N     + Y+Q+   G 
Sbjct: 485 INGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGL 544

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAII 238
           +   Y + +LI+         KA + V D E      +    +AL+      GR ++   
Sbjct: 545 KPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYH 604

Query: 239 VYEEIKEAGCNLE 251
           +++E+   G  L+
Sbjct: 605 LWDEMAVRGVKLD 617



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 67/356 (18%), Positives = 142/356 (39%), Gaps = 87/356 (24%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           A+  I  ++ ++  LI   C   K+  A  + ++M+   ++P+  T N ++         
Sbjct: 470 AERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNI 529

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMIS----------LNVKIKDFDSAYSLLDDLKEMNL 112
               ++Y  +    LKP++ T+RS+IS           N  + D +++Y++L+     N 
Sbjct: 530 RKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLN-----NF 584

Query: 113 MPTASMYNAIMAGYF------------------------------RKKDVQGALMVLKEM 142
             TA +Y     G F                              ++ D + + ++ +EM
Sbjct: 585 SLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREM 644

Query: 143 EQANVKPDSQTFSYLIHNCSNEEDIIKY---YEQLKSAG--------------------- 178
           ++  VKPD   ++ +I   S EE++I+    ++Q+   G                     
Sbjct: 645 KEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYL 704

Query: 179 ------------GQI--TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--A 222
                       G +   K+ +   ++ + T G+ EKA+   L + +     + + S   
Sbjct: 705 GSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKD--LHSAMLQGHLASIVSFNI 762

Query: 223 LVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           L+  L   G+  +AI +  +I E+G + +  +   +I  L   G++N+  +L  E+
Sbjct: 763 LIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEM 818


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 102/220 (46%), Gaps = 10/220 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+ +  Q++   L+P   T +S+L AC         ++++ +     +  N     ++I+
Sbjct: 119 AILLCSQVLCSGLLPDDYTFSSLLKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLIN 178

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +     D D+A  + D + E    P    YNAI+    R      AL + +E++++ +KP
Sbjct: 179 MYTACNDVDAARRVFDKIGE----PCVVAYNAIITSCARNSRPNEALALFRELQESGLKP 234

Query: 150 DSQTFSYLIHNCS--NEEDIIKY-YEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
              T    + +C+     D+ ++ +E +K  G      V  ALI+ Y  CG  + A  V 
Sbjct: 235 TDVTMLVALSSCALLGALDLGRWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVF 294

Query: 207 LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA 246
            D     +  ++  SA++ A A+HG  S AI +  E+K+A
Sbjct: 295 KDMP---RRDTQAWSAMIVAYATHGHGSQAISMLREMKKA 331



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 103/225 (45%), Gaps = 21/225 (9%)

Query: 42  LVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL---NVKIKDFD 98
           L P + +I S++  C    E   ++  Y +  H N   N      +I+    N  I   D
Sbjct: 31  LEPPSSSILSLIPKCTSLRELKQIQA-YTIKTHQN---NPTVLTKLINFCTSNPTIASMD 86

Query: 99  SAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            A+ + D + +    P   ++N +  GY R  D   A+++  ++  + + PD  TFS L+
Sbjct: 87  HAHRMFDKIPQ----PDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLL 142

Query: 159 HNCSN----EEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVK 214
             C+     EE    +   +K   G    YV   LIN YT C + + AR+V      P  
Sbjct: 143 KACARLKALEEGKQLHCLAVKLGVGD-NMYVCPTLINMYTACNDVDAARRVFDKIGEPCV 201

Query: 215 SRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALI 259
                 +A++++ A + R ++A+ ++ E++E+G  L+P  V  L+
Sbjct: 202 V---AYNAIITSCARNSRPNEALALFRELQESG--LKPTDVTMLV 241



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 108/241 (44%), Gaps = 10/241 (4%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  +IT      + + AL +  ++ +  L P+  T+   L +C      +L R I
Sbjct: 199 PCVVAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWI 258

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +  +      +   ++I +  K    D A S+  D+   +       ++A++  Y  
Sbjct: 259 HEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRD----TQAWSAMIVAYAT 314

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYV 185
                 A+ +L+EM++A V+PD  TF  +++ CS+    E+  +Y+  +    G +    
Sbjct: 315 HGHGSQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIK 374

Query: 186 -FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
            +  +I+     G  E+A + +   E+P+K    +   L+S+ +SHG    A +V + I 
Sbjct: 375 HYGCMIDLLGRAGRLEEACKFI--DELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRIF 432

Query: 245 E 245
           E
Sbjct: 433 E 433


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/288 (20%), Positives = 125/288 (43%), Gaps = 8/288 (2%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           L I P   ++  L+   C   KV  A  V++ M +  + P   T +S+++      E   
Sbjct: 302 LNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVE 361

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
            R+++  +     KP+  ++  +I+   K+K  D A  L +++    L P    YN ++ 
Sbjct: 362 ARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIH 421

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK- 183
           G  +   ++ A  + K M      P+  T+S L+     +    K +   ++     +K 
Sbjct: 422 GLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKP 481

Query: 184 --YVFMALINAYTTCGEFEKARQVVLDAEIPVKS---RSEVKSALVSALASHGRTSDAII 238
              ++  LI+A    G    AR+  L +E+ VK     +++ + +++ L   G   +A+ 
Sbjct: 482 NLVMYNILIDAMCKSGNLRDARK--LFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALE 539

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
            +  ++E GC  +  +   +I       + +R +QL+ E+ D  +  D
Sbjct: 540 AFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEMRDKGFIAD 587



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 80/418 (19%), Positives = 169/418 (40%), Gaps = 43/418 (10%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  +I   C + +   A  ++++M +    P+  T ++I+ +  +    N    I
Sbjct: 201 PDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDI 260

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    + P+  T+ S+I        +  A +LL++++ +N+MP    +N ++    +
Sbjct: 261 FSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICK 320

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYV 185
           +  V  A  VLK M +  V+PD  T+S L++  S   +++   K ++ + + G +   + 
Sbjct: 321 EGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFS 380

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
           +  LIN Y      ++A+Q                  L + +   G T + +  Y  +  
Sbjct: 381 YNILINGYCKVKRIDEAKQ------------------LFNEMIHQGLTPNNV-SYNTLIH 421

Query: 246 AGCNLEP-RAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSA 304
             C L   R    L +++++ G L  L             +DG C+             A
Sbjct: 422 GLCQLGSLREARNLFKNMHTNGNLPNLFTY-------SILLDGFCKQ-------GYFGKA 467

Query: 305 TDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCL 364
             L + ++  +    + M     +  C+  + +  D +     L F+K   GL P+ +  
Sbjct: 468 FRLFRAMQSTYSKPNLVMYNILIDAMCK--SGNLRDARKLFSEL-FVK---GLQPNAQIY 521

Query: 365 DFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
             ++        L  A   ++  E  G P + +SY  + + FL   +   A +L+ +M
Sbjct: 522 TTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEM 579



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 83/447 (18%), Positives = 177/447 (39%), Gaps = 36/447 (8%)

Query: 29  VALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
             + + +QM    L P+  T++ +++        +L   +   I    L+P   TF ++I
Sbjct: 116 TVISLTKQMELAGLSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLI 175

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
           +   K+  F  A  L DD+      P    Y  I+ G  +  +   A  +LK+ME+A  +
Sbjct: 176 NWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQ 235

Query: 149 PDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           P+  T+S +I +   +  +   +  +  +K  G     + + +LI       ++++A  +
Sbjct: 236 PNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASAL 295

Query: 206 VLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHL 262
           + +   + +       + LV  +   G+ S+A  V + + E G  +EP  V   +L+   
Sbjct: 296 LNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMG--VEPDVVTYSSLMYGY 353

Query: 263 NSEGELNRLIQLLE---------EVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKD 313
           +   E+    +L +         +V   +  ++G C++       K++  A  L  ++  
Sbjct: 354 SLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKV-------KRIDEAKQLFNEMIH 406

Query: 314 KFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVN 373
           +                CQ+ +     ++   +L + +     LP        L G C  
Sbjct: 407 QGLTPNNVSYNTLIHGLCQLGS-----LREARNLFKNMHTNGNLPNLFTYSILLDGFCKQ 461

Query: 374 ARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM------PKDDP 427
                +A  +++  ++     N++ Y  +  A   SGN + A KL S++      P    
Sbjct: 462 GY-FGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQI 520

Query: 428 HVRFVIQACKQTYTIPSLQKERGFEKD 454
           +   +   CK+     +L+  R  E+D
Sbjct: 521 YTTIINGLCKEGLLDEALEAFRNMEED 547


>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
           [Vitis vinifera]
          Length = 811

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 94/433 (21%), Positives = 178/433 (41%), Gaps = 63/433 (14%)

Query: 9   PSSASYKKLIT-YSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           PS  +Y  LI+ Y+ D L +  AL++  QMV+  + P   T  ++L   E++ +     +
Sbjct: 339 PSIVTYNSLISAYARDGL-LEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQ 397

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           I+  + +   KPN  TF ++I ++     F     + +D+K     P    +N +++ + 
Sbjct: 398 IFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFG 457

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFM 187
           +         V KEM++A   P+  TF+                                
Sbjct: 458 QNGMDSEVSGVFKEMKRAGFVPERDTFN-------------------------------- 485

Query: 188 ALINAYTTCGEFEKARQV---VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
            LI++Y+ CG F++A  V   +L+A +     S   +A+++ALA  G    +  V  E+K
Sbjct: 486 TLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSS--YNAVLAALARGGLWKQSEKVLAEMK 543

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQL--- 301
           +  C        +L+    +  E+ R+  L EE++           +    V  K L   
Sbjct: 544 DGRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGI--------IEPRAVLLKTLVLV 595

Query: 302 SSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDEL------ 355
           +S  DLL + +  F      +E         I T +      G   +    +E+      
Sbjct: 596 NSKCDLLMETERAF------LELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKR 649

Query: 356 -GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKS 414
            G  PS    + L+     + + +R+  I +E    G+  +++SY  +  A+  +G  + 
Sbjct: 650 GGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRD 709

Query: 415 ASKLLSKMPKDDP 427
           AS++LS+M +  P
Sbjct: 710 ASRVLSEMRESGP 722



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 81/372 (21%), Positives = 152/372 (40%), Gaps = 41/372 (11%)

Query: 72  ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131
           +C      +   + SMI+       +  A  +   ++E+   PT   YN I+  Y +   
Sbjct: 191 LCKDGFDVDVYAYTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILNVYGKMGM 250

Query: 132 VQGALMVLKE-MEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFM 187
               ++ L + M+ A + PDS T++ LI  C      E+     +++K AG    K  + 
Sbjct: 251 PWNKMVGLVDRMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYN 310

Query: 188 ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEA 246
           AL++ Y      ++A +V+ + E      S V  ++L+SA A  G   DA+ +  ++ E 
Sbjct: 311 ALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEK 370

Query: 247 GCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATD 306
           G   +      L+      G+    +Q+ EE+ +     +GC            + +   
Sbjct: 371 GIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRN-----EGC---------KPNICTFNA 416

Query: 307 LLKQLKDKFKDDEMAMEYHFSEIFCQIATTD-PPDV-----------QIGLDL-LQFIKD 353
           L+K   ++ K  EM       ++F  I T    PD+           Q G+D  +  +  
Sbjct: 417 LIKMHGNRGKFTEMM------KVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFK 470

Query: 354 EL---GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASG 410
           E+   G  P R   + L+ +        +A  ++K    AG+  ++ SY  +  A    G
Sbjct: 471 EMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGG 530

Query: 411 NRKSASKLLSKM 422
             K + K+L++M
Sbjct: 531 LWKQSEKVLAEM 542



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/143 (20%), Positives = 65/143 (45%), Gaps = 3/143 (2%)

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R +  +      P+  T  +M+S+  + +    A  +LD +K     P+ + YN++M  Y
Sbjct: 607 RAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMY 666

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITK 183
            R  + + +  +L+E+    ++PD  +++ +I+  C N    D  +   +++ +G     
Sbjct: 667 SRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDI 726

Query: 184 YVFMALINAYTTCGEFEKARQVV 206
             +   I +Y     F +A  VV
Sbjct: 727 ITYNTFIASYAADSMFVEAIDVV 749



 Score = 42.4 bits (98), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 29/132 (21%), Positives = 58/132 (43%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS 86
           V  A ++++ M +G   PS  T NS+++    S  F     I   I    ++P+  ++ +
Sbjct: 637 VAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNT 696

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           +I    +      A  +L +++E    P    YN  +A Y        A+ V+  M +  
Sbjct: 697 VIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHG 756

Query: 147 VKPDSQTFSYLI 158
            KP+  T++ ++
Sbjct: 757 CKPNQSTYNSIV 768


>gi|7413543|emb|CAB86023.1| putative protein [Arabidopsis thaliana]
          Length = 880

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 73/385 (18%), Positives = 160/385 (41%), Gaps = 54/385 (14%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
            L V +++ +    P+  T   +++   +  + +    +  ++    +K N +T+  MI+
Sbjct: 468 GLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMIN 527

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
             VK+KD+ +A+++ +D+ +  + P   +YN I++ +    ++  A+  +KEM++   +P
Sbjct: 528 GFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRP 587

Query: 150 DSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
            ++TF  +IH  +   D+   ++ ++ ++  G   T + F  LIN     G  EK + V 
Sbjct: 588 TTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLIN-----GLVEKRQAVE 642

Query: 207 LDAEIP---VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
           +  E+    V +     + ++   AS G T  A   +  ++  G +++     AL++   
Sbjct: 643 ILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACC 702

Query: 264 SEGELNRLIQLLEEVHDPDYWMDGCCRLIL--HCVRFKQLSSATDLLKQLKDKFKDDEMA 321
             G +   + + +E+   +   +     IL     R   +  A DL++Q+K +       
Sbjct: 703 KSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKE------- 755

Query: 322 MEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAH 381
                                             G+ P        + AC  A D+ RA 
Sbjct: 756 ----------------------------------GVKPDIHTYTSFISACSKAGDMNRAT 781

Query: 382 LIWKEYENAGLPYNVLSYLWMYKAF 406
              +E E  G+  N+ +Y  + K +
Sbjct: 782 QTIEEMEALGVKPNIKTYTTLIKGW 806



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 87/454 (19%), Positives = 188/454 (41%), Gaps = 42/454 (9%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           PS   +  ++ +      +H A +  E+M    + P++    S++HA     + +     
Sbjct: 307 PSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALSC 366

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    ++ +  T+  ++    K    ++A    D+ K ++    AS+Y  I+  + +
Sbjct: 367 VRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQ 426

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYV 185
             +++ A  +++EME+  +      +  ++      ++E+  +  +++LK  G   T   
Sbjct: 427 TCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVT 486

Query: 186 FMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +  LIN YT  G+  KA +V  +  E  VK   +  S +++        ++A  V+E++ 
Sbjct: 487 YGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMV 546

Query: 245 EAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEV----HDP----------DYWMDGC 288
           + G  ++P  ++   +I      G ++R IQ ++E+    H P           Y   G 
Sbjct: 547 KEG--MKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGD 604

Query: 289 CR-------LILHCVRFKQLSSATDLLKQLKDKFKD----DEM------AMEYHFSEIFC 331
            R       ++  C     + +   L+  L +K +     DEM      A E+ +++I  
Sbjct: 605 MRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQAVEILDEMTLAGVSANEHTYTKIMQ 664

Query: 332 QIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAG 391
             A+    D     +    +++E GL       + LL AC  +  ++ A  + KE     
Sbjct: 665 GYASVG--DTGKAFEYFTRLQNE-GLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARN 721

Query: 392 LPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKD 425
           +P N   Y  +   +   G+   A+ L+ +M K+
Sbjct: 722 IPRNSFVYNILIDGWARRGDVWEAADLIQQMKKE 755



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 109/280 (38%), Gaps = 42/280 (15%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P    Y  +I+  C +  +  A+  V++M +    P+T T   I+H   +S +     
Sbjct: 550 MKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSL 609

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++ M+      P   TF  +I+  V+ +    A  +LD++    +      Y  IM GY
Sbjct: 610 EVFDMMRRCGCVPTVHTFNGLINGLVEKRQ---AVEILDEMTLAGVSANEHTYTKIMQGY 666

Query: 127 FRKKD-----------------------------------VQGALMVLKEMEQANVKPDS 151
               D                                   +Q AL V KEM   N+  +S
Sbjct: 667 ASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNS 726

Query: 152 QTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
             ++ LI   +   D+ +     +Q+K  G +   + + + I+A +  G+  +A Q + +
Sbjct: 727 FVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEE 786

Query: 209 AE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
            E + VK   +  + L+   A       A+  YEE+K  G
Sbjct: 787 MEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMG 826



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/159 (19%), Positives = 69/159 (43%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y+ L+   C   ++  AL V ++M    +  ++   N ++       +      +   +
Sbjct: 693 TYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQM 752

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               +KP+  T+ S IS   K  D + A   +++++ + + P    Y  ++ G+ R    
Sbjct: 753 KKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLP 812

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY 171
           + AL   +EM+   +KPD   +  L+ +  +   I + Y
Sbjct: 813 EKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRASIAEAY 851



 Score = 40.0 bits (92), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 34/203 (16%), Positives = 88/203 (43%), Gaps = 8/203 (3%)

Query: 78  KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALM 137
           KP+   F  M+    +  D   A    + ++   + PT+ +Y +++  Y   +D+  AL 
Sbjct: 306 KPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALS 365

Query: 138 VLKEMEQANVKPDSQTFSYLIHNCS---NEEDIIKYYEQLKSAGGQITKYVFMALINAYT 194
            +++M++  ++    T+S ++   S   + E    ++++ K     +   ++  +I A+ 
Sbjct: 366 CVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHC 425

Query: 195 TCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPR 253
                E+A  +V +  E  + +   +   ++            ++V++ +KE  C   P 
Sbjct: 426 QTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKE--CGFTPT 483

Query: 254 AVI--ALIEHLNSEGELNRLIQL 274
            V    LI      G++++ +++
Sbjct: 484 VVTYGCLINLYTKVGKISKALEV 506


>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1084

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 77/375 (20%), Positives = 143/375 (38%), Gaps = 75/375 (20%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
             P  ++Y K+I + CD  KV  A  + E+M +  +VPS  T   ++ +  ++      R
Sbjct: 456 FVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQAR 515

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLM----PTASMYNAI 122
           + +  + H    PN  T+ ++I   +K K    A    D+L EM L+    P    Y A+
Sbjct: 516 KWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVA----DELFEMMLLEGCKPNVVTYTAL 571

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY------------ 170
           + G+ +   ++ A  +   M       D   +  L HN     ++I Y            
Sbjct: 572 IDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANR 631

Query: 171 -------YEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV----------------- 206
                   + + + G +  + V+ A+I+ +   G+ + A++V                  
Sbjct: 632 VKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSS 691

Query: 207 ----------LDAEIPVKSR---------SEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
                     LD  + V S+           + + +V  L   G+T +A  +  +++E G
Sbjct: 692 FIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKG 751

Query: 248 CNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCR-------LILHCVRFKQ 300
           CN       A+I+     G++ + ++L       D    GC         LI HC     
Sbjct: 752 CNPNVVTYTAMIDGFGKSGKIEQCLELFR-----DMCSKGCAPNFITYRVLINHCCSNGL 806

Query: 301 LSSATDLLKQLKDKF 315
           L  A  LL ++K  +
Sbjct: 807 LDEAYKLLDEMKQTY 821



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 62/315 (19%), Positives = 115/315 (36%), Gaps = 47/315 (14%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +  P +  Y ++++  C+      A+D++ +M     +P+  T   +L  C    +    
Sbjct: 274 DFVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRC 333

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           +RI  M+      PN E F S+I    K +D+  AY L   + +    P   +YN  +  
Sbjct: 334 KRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFIGS 393

Query: 126 ----------------------------YFRKKDVQG-------------ALMVLKEMEQ 144
                                          K +V               A  ++ EM  
Sbjct: 394 VCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMG 453

Query: 145 ANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEK 201
               PD  T+S +I    + S  E     +E++K  G   + Y +  LI+++   G  ++
Sbjct: 454 KGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQ 513

Query: 202 ARQVVLDAEIPVKSRSEV--KSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALI 259
           AR+   D  +       V   +AL+ A     +   A  ++E +   GC        ALI
Sbjct: 514 ARK-WFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALI 572

Query: 260 EHLNSEGELNRLIQL 274
           +     G++ +  Q+
Sbjct: 573 DGHCKAGQIEKACQI 587


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 119/240 (49%), Gaps = 20/240 (8%)

Query: 32  DVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLN 91
           D ++   + +L P   T  S+L AC  + +  L R ++  I +  L+ N     +++S+ 
Sbjct: 246 DAIQLYQRMQLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMY 305

Query: 92  VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM-------EQ 144
            K      A ++ D +++ +++     +  I++ Y R++ V  A  + ++M         
Sbjct: 306 AKCGSHTEARAVFDKMEQRSIIS----WTTIISAYVRRRLVAEACHLFQQMLELEKNGSS 361

Query: 145 ANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEK 201
             VKPD+  F  +++ C++   + +     EQ  S G    K V  A++N Y  CGE E+
Sbjct: 362 QRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEE 421

Query: 202 ARQVVLDAEIPVKSRSEVK--SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALI 259
           AR+ + DA   V SR +V+  +A+++  A  G++ +A+ ++  ++  G   +  + ++++
Sbjct: 422 ARR-IFDA---VCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSIL 477



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 72/339 (21%), Positives = 133/339 (39%), Gaps = 40/339 (11%)

Query: 100 AYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159
           A +  D L++ NL      +  ++A +      +  L  L+ M Q  V+PD+ TF   + 
Sbjct: 11  AKAAFDALEQRNLYS----WTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALG 66

Query: 160 NCSNEE---DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSR 216
           +C + E   D I+ ++ +  +  +I   V  AL+N Y  CG    A++V    E   ++R
Sbjct: 67  SCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKME---RTR 123

Query: 217 SEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLL 275
           + +  S +  A A HG   +A+  +  +   G      A++ ++   +S           
Sbjct: 124 NVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSS----------- 172

Query: 276 EEVHDPDYWMDGCCRLILHCVRFKQLSS----ATDLLKQLKDKFKDDEM-----AMEYHF 326
                P    DG  R+I  C+      S    A  ++         +E      AM+   
Sbjct: 173 -----PALVQDG--RMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEAL 225

Query: 327 SEIFC-QIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWK 385
            ++    I  +       G D +Q  +  + L P +     LL AC +A D+    ++ K
Sbjct: 226 RDVVSWNIMLSTYVHNDRGKDAIQLYQ-RMQLRPDKVTYVSLLSACSSAEDVGLGRVLHK 284

Query: 386 EYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424
           +  N  L  NV+    +   +   G+   A  +  KM +
Sbjct: 285 QIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQ 323



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 51/261 (19%), Positives = 110/261 (42%), Gaps = 16/261 (6%)

Query: 15  KKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICH 74
           ++L+  +C L +  + L+  +      + P      +IL+AC +       + +      
Sbjct: 339 RRLVAEACHLFQQMLELE--KNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAAS 396

Query: 75  HNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQG 134
             L  +     ++++L  K  + + A  + D +      P   ++NA++A Y +      
Sbjct: 397 CGLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSR---PDVQLWNAMIAVYAQFGQSHE 453

Query: 135 ALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLKSAGGQITKYV--FMAL 189
           AL +   ME   V+PDS +F  ++  CS+   E+    Y+  + +    +T+ +  F  +
Sbjct: 454 ALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCV 513

Query: 190 INAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
            +     G  ++A + +   ++PVK  +   ++L++A  +H     A    +E+      
Sbjct: 514 ADLLGRGGRLKEAEEFL--EKLPVKPDAVAWTSLLAACRNHRDLKRA----KEVANKLLR 567

Query: 250 LEPRAVIALIEHLNSEGELNR 270
           LEPR     +   N   EL +
Sbjct: 568 LEPRCATGYVALSNIYAELQK 588


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 115/256 (44%), Gaps = 12/256 (4%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMV-----QGELVPSTETINSILHAC-EE 58
           L  TP+  SY  L+   CD  +   AL ++  M+     +G   P   + N++++    E
Sbjct: 156 LGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTVINGLLRE 215

Query: 59  SYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM 118
             + +    ++  +    L P+  T+ S+IS   K +  D A  +L  + +   MP    
Sbjct: 216 GRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRIT 275

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI-HNCSNEEDI--IKYYEQLK 175
           +N+++ GY        A+ V K M +  V+PD  T++ L+ + C N   +   K ++ + 
Sbjct: 276 HNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMV 335

Query: 176 SAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEI--PVKSRSEVKSALVSALASHGRT 233
             G +     +  L++ Y T G   K    +LD  +   ++    + + L+     HG+ 
Sbjct: 336 KRGHKPNSATYGTLLHGYATEGSLVKMHH-LLDMMVRNGIQPDHYIFNILIGTYTKHGKV 394

Query: 234 SDAIIVYEEIKEAGCN 249
            DA++++ +++  G N
Sbjct: 395 DDAMLLFSKMRRQGLN 410



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/290 (18%), Positives = 129/290 (44%), Gaps = 16/290 (5%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P++  +  L+ + C    V  A ++ + MV+ ++     T N+++       + +   
Sbjct: 479 ICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAA 538

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           ++   +    +KPN  T+ +MI+   K    + A+SL   +    + P    Y+ I+ G 
Sbjct: 539 KLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGL 598

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI-----HNCSNEEDIIKYYEQLKSAGGQI 181
           F+ +    A  +   M ++ +K D  T++ ++     +NC+  +D ++ ++ L      +
Sbjct: 599 FQARRTAAAKELYLWMIKSGIKFDIGTYNIILLGLCQNNCT--DDALRIFQNLYLIDFHL 656

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSA-----LVSALASHGRTSDA 236
               F  +I+A    G  ++A+    D    + +R  V +      ++ +L   G   + 
Sbjct: 657 ENRTFNIMIDALLKGGRHDEAK----DLFASLLARGLVPNVVTYWLMMKSLIEQGLLEEL 712

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
             ++  +++ GC    R + AL+  L  +GE+ +    L ++ + ++ ++
Sbjct: 713 DDLFLSLEKNGCTANSRMLNALVGKLLQKGEVRKAGVYLSKIDENNFSLE 762



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/241 (19%), Positives = 88/241 (36%), Gaps = 4/241 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  L+ Y C   +   A  + + MV+    P++ T  ++LH          + 
Sbjct: 304 VEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMH 363

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +  M+  + ++P+   F  +I    K    D A  L   ++   L P    Y  +M   
Sbjct: 364 HLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDAL 423

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITK 183
                V  A+     +    + PD+  F  LIH     +   K  E   ++   G     
Sbjct: 424 CMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNN 483

Query: 184 YVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             F  L+N     G   +A+ +  L   + V+      + L+     HG+  +A  + E 
Sbjct: 484 IFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEG 543

Query: 243 I 243
           +
Sbjct: 544 M 544



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/199 (18%), Positives = 87/199 (43%), Gaps = 3/199 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           ++P   +Y  +I+       +  A  V+ +MV+   +P+  T NS+LH    S + N   
Sbjct: 234 LSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAI 293

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +C   ++P+  T+ +++    K      A  + D + +    P ++ Y  ++ GY
Sbjct: 294 GVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGY 353

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITK 183
             +  +     +L  M +  ++PD   F+ LI   +     +D +  + +++  G     
Sbjct: 354 ATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDT 413

Query: 184 YVFMALINAYTTCGEFEKA 202
             +  +++A    G+ + A
Sbjct: 414 VTYGIVMDALCMVGKVDDA 432


>gi|255569195|ref|XP_002525566.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535145|gb|EEF36825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 563

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 108/231 (46%), Gaps = 20/231 (8%)

Query: 35  EQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKI 94
           ++M+   L P+  T+  +LHAC +S +    + ++ ++    L  N     S+IS+  K 
Sbjct: 333 KKMMDEGLQPTDVTVMEVLHACADSGDLEQGKFVHKLVEDLKLDSNVSVMNSLISMYSKC 392

Query: 95  KDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTF 154
           K  D A +L ++L+   L+     +NA++ GY +   +  AL    EM+  N+KPDS T 
Sbjct: 393 KQVDFAANLFENLQNRTLVS----WNAMILGYAQNGRLNEALNFFCEMQSQNIKPDSFTM 448

Query: 155 SYLIHNCSNEEDIIKYYEQLKSAGGQI-------TKYVFMALINAYTTCGEFEKARQVVL 207
             +I   +     +    Q K   G +       T +V  AL++ Y  CG    AR++  
Sbjct: 449 VSVIPALAE----LSIPRQAKWIHGLVIRRLLDDTVFVMTALVDMYAKCGAIHTARKLF- 503

Query: 208 DAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
              +  +      ++++ A  +HG   +A+ ++ E+++    ++P  V  L
Sbjct: 504 --NMMSERHVITWNSMIDAYGTHGLGKEAVQLFVEMQKG--TIKPNDVTFL 550



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 83/438 (18%), Positives = 185/438 (42%), Gaps = 44/438 (10%)

Query: 36  QMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIK 95
           +M    + P       +L  C ++++    + I+  +       N     +++SL  K +
Sbjct: 132 RMKHDNVRPVVYNFTYLLTLCGDNFDLRRGKEIHGQLITSGFSWNLFAMTAVVSLYCKCR 191

Query: 96  DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFS 155
               AY + D + E +L+     +N I++GY +    + AL ++ ++ +   +PDS T  
Sbjct: 192 VIGDAYKMFDRMTERDLV----CWNTIISGYAQNGLTKVALELVPKIFEEGHRPDSVTIV 247

Query: 156 YLIHNCSNEEDIIKYYEQLKS----AGGQITKYVFMALINAYTTCGEFEKARQVVLDAEI 211
            ++   ++    +++ + + +    AG      +  AL++ Y+ C     AR V+ D   
Sbjct: 248 SVLPAVADIRS-LRFGKAIHAYVIRAGFDWLVNISTALVDMYSKCDSLGTAR-VIFDG-- 303

Query: 212 PVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGEL-- 268
            + SR+ V  +++++    +G   +A ++++++ + G       V+ ++      G+L  
Sbjct: 304 -MGSRTVVTWNSMIAGCVENGDPEEAKVLFKKMMDEGLQPTDVTVMEVLHACADSGDLEQ 362

Query: 269 NRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSE 328
            + +  L E    D  +     LI    + KQ+  A +L + L+++      AM   +++
Sbjct: 363 GKFVHKLVEDLKLDSNVSVMNSLISMYSKCKQVDFAANLFENLQNRTLVSWNAMILGYAQ 422

Query: 329 ---------IFCQIATTD-PPDVQIGLDLLQFIKDELGLPPS---------RKCLD---F 366
                     FC++ + +  PD    + ++  +  EL +P           R+ LD   F
Sbjct: 423 NGRLNEALNFFCEMQSQNIKPDSFTMVSVIPALA-ELSIPRQAKWIHGLVIRRLLDDTVF 481

Query: 367 LLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK-- 424
           ++ A V+      A    ++  N     +V+++  M  A+   G  K A +L  +M K  
Sbjct: 482 VMTALVDMYAKCGAIHTARKLFNMMSERHVITWNSMIDAYGTHGLGKEAVQLFVEMQKGT 541

Query: 425 ---DDPHVRFVIQACKQT 439
              +D     V+ AC  +
Sbjct: 542 IKPNDVTFLCVLSACSHS 559



 Score = 45.8 bits (107), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 58/293 (19%), Positives = 128/293 (43%), Gaps = 34/293 (11%)

Query: 117 SMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---Q 173
           ++Y+ ++ G+ +   +  AL+    M+  NV+P    F+YL+  C +  D+ +  E   Q
Sbjct: 108 ALYHTMLKGFAKNSSLDSALLFFCRMKHDNVRPVVYNFTYLLTLCGDNFDLRRGKEIHGQ 167

Query: 174 LKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE----VKSALVSALAS 229
           L ++G     +   A+++ Y  C       +V+ DA       +E      + ++S  A 
Sbjct: 168 LITSGFSWNLFAMTAVVSLYCKC-------RVIGDAYKMFDRMTERDLVCWNTIISGYAQ 220

Query: 230 HGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH------DPDY 283
           +G T  A+ +  +I E G   +   +++++  +       R ++  + +H        D+
Sbjct: 221 NGLTKVALELVPKIFEEGHRPDSVTIVSVLPAVADI----RSLRFGKAIHAYVIRAGFDW 276

Query: 284 WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQI 343
            ++    L+    +   L +A  +   +  +       + ++ S I   +   DP + ++
Sbjct: 277 LVNISTALVDMYSKCDSLGTARVIFDGMGSR-----TVVTWN-SMIAGCVENGDPEEAKV 330

Query: 344 GLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNV 396
              L + + DE GL P+   +  +L AC ++ DL++   + K  E+  L  NV
Sbjct: 331 ---LFKKMMDE-GLQPTDVTVMEVLHACADSGDLEQGKFVHKLVEDLKLDSNV 379



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 47/231 (20%), Positives = 103/231 (44%), Gaps = 20/231 (8%)

Query: 29  VALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
           VAL++V ++ +    P + TI S+L A  +       + I+  +             +++
Sbjct: 226 VALELVPKIFEEGHRPDSVTIVSVLPAVADIRSLRFGKAIHAYVIRAGFDWLVNISTALV 285

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
            +  K     +A  + D +       T   +N+++AG     D + A ++ K+M    ++
Sbjct: 286 DMYSKCDSLGTARVIFDGMGS----RTVVTWNSMIAGCVENGDPEEAKVLFKKMMDEGLQ 341

Query: 149 PDSQTFSYLIHNCSNEED------IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
           P   T   ++H C++  D      + K  E LK         V  +LI+ Y+ C + + A
Sbjct: 342 PTDVTVMEVLHACADSGDLEQGKFVHKLVEDLKLDS---NVSVMNSLISMYSKCKQVDFA 398

Query: 203 RQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEP 252
             +  +    +++R+ V  +A++   A +GR ++A+  + E++    N++P
Sbjct: 399 ANLFEN----LQNRTLVSWNAMILGYAQNGRLNEALNFFCEMQSQ--NIKP 443


>gi|255660814|gb|ACU25576.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 418

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/282 (20%), Positives = 131/282 (46%), Gaps = 9/282 (3%)

Query: 9   PSSASYKKLITYS-CDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           P+S  +  ++ +S C   ++ +A  V + + +  L PS  + N++++   +  + N   R
Sbjct: 133 PASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFR 192

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +   +    ++P+  T+  +I+   K    D A  L D++ +  L+P    +  ++ G+ 
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKY 184
           +   V  A+ + K+M   ++ PD  T++ LI+    + D+ +     +++   G +  K 
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 185 VFMALINAYTTCGEFEKA---RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
            +  LI+     G+ E A   R++++   I +   +   +AL+S L   GR+ DA  +  
Sbjct: 313 TYTTLIDGSCKEGDLETAFEYRKIMIKENIRLDDVA--YTALISGLCQEGRSVDAEKMLR 370

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY 283
           E+   G  LE      +I     +G++    +L++E+    Y
Sbjct: 371 EMLSVGLKLEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGY 412



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 87/195 (44%), Gaps = 3/195 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  LI   C   K+  A ++ ++M+   LVP+  T  +++    ++   +L  
Sbjct: 202 VQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAM 261

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            IY  +   +L P+  T+ ++I    K  D   A  L+D++    L P    Y  ++ G 
Sbjct: 262 EIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGS 321

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQITK 183
            ++ D++ A    K M + N++ D   ++ LI     E    D  K   ++ S G ++  
Sbjct: 322 CKEGDLETAFEYRKIMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKLEI 381

Query: 184 YVFMALINAYTTCGE 198
             +  +IN +   G+
Sbjct: 382 GTYTMIINEFCKKGD 396



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/161 (19%), Positives = 78/161 (48%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  ++  LI   C   +V +A+++ +QM+   L P   T N++++   +  +    +
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQ 296

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +    LKP+  T+ ++I  + K  D ++A+     + + N+      Y A+++G 
Sbjct: 297 DLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKIMIKENIRLDDVAYTALISGL 356

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI 167
            ++     A  +L+EM    +K +  T++ +I+    + D+
Sbjct: 357 CQEGRSVDAEKMLREMLSVGLKLEIGTYTMIINEFCKKGDV 397


>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]
          Length = 770

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 126/262 (48%), Gaps = 37/262 (14%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI----YPMICHHNLKPNSE 82
           V + L +   M+   ++P+  T+ S++  C    + NL +++    + + C  NL   + 
Sbjct: 262 VELGLSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNS 321

Query: 83  TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR-----KKDVQG--- 134
           T    + L ++  + D A  L + +++ +++     +NA+++GY +     K D+Q    
Sbjct: 322 T----MYLYLRKGETDEAMRLFEQMEDASIIT----WNAMISGYAQIMDSAKDDLQARSR 373

Query: 135 ---ALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFM---- 187
              AL + ++++++ +KPD  TFS ++  CS     +   EQ +    Q  K  F+    
Sbjct: 374 GFQALTIFRDLKRSVMKPDLFTFSSILSVCS----AMMALEQGEQIHAQTIKSGFLSDVV 429

Query: 188 ---ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
              AL+N Y  CG  + A +  L  E+P ++     S ++S  + HG+  +AI ++EE++
Sbjct: 430 VNSALVNMYNKCGCIQDANKAFL--EMPTRTFVTWTS-MISGYSQHGQPQEAIQLFEEMR 486

Query: 245 EAGCNLEPRAVIALIEHLNSEG 266
            AG        ++L+   +  G
Sbjct: 487 LAGVRPNEITFVSLLSACSYAG 508



 Score = 42.7 bits (99), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 101/247 (40%), Gaps = 32/247 (12%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL +   + +  + P   T +SIL  C          +I+       +K     F S + 
Sbjct: 377 ALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHA----QTIKSG---FLSDVV 429

Query: 90  LNVKIKDFDSAYSLLDDLKEMNL-MPTASM--YNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           +N  + +  +    + D  +  L MPT +   + ++++GY +    Q A+ + +EM  A 
Sbjct: 430 VNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAG 489

Query: 147 VKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYV-------FMALINAYTTC 196
           V+P+  TF  L+  CS     E+   Y++ +K       +Y        +  +I+ +   
Sbjct: 490 VRPNEITFVSLLSACSYAGLVEEAEHYFDMMKK------EYCIEPVVDHYGCMIDMFVRL 543

Query: 197 GEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI 256
           G  E A   +       +    + S+LV+   SHG    A    +++ E    L+P+ + 
Sbjct: 544 GRVEDAFSFI--KRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLE----LKPKGIE 597

Query: 257 ALIEHLN 263
             I  LN
Sbjct: 598 TYILLLN 604



 Score = 39.3 bits (90), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 30/139 (21%), Positives = 64/139 (46%), Gaps = 3/139 (2%)

Query: 29  VALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
           + L+V  +M++    PS  T+ + L+AC  S + +L ++++     +  +  +    S+ 
Sbjct: 162 LGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLC 221

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
           SL  K+   DSA      + E N++   +M +A       ++ V+  L +  +M    V 
Sbjct: 222 SLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAE---DEECVELGLSLFIDMLMDGVM 278

Query: 149 PDSQTFSYLIHNCSNEEDI 167
           P+  T + ++  C    D+
Sbjct: 279 PNEFTLTSVMSLCGTRLDL 297


>gi|357120534|ref|XP_003561982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 989

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 115/257 (44%), Gaps = 16/257 (6%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           SY  +I+      K   + DV  QM    L P+  T+ S+L  C + +  NL   ++ M+
Sbjct: 309 SYNSMISAYMQHGKWKESFDVFRQMHCAGLGPNLVTVISVLPTCSDFFGVNLGDSVHGMV 368

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               L        +++S+  K+ + DSA  L D   E N +    ++N+I++GY    + 
Sbjct: 369 IKFGLAEQISVVSALVSMYSKLGELDSAKHLFDSCTEKNNL----LWNSIISGYLVNNEW 424

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI-----IKYYEQLKSAGGQITKYVFM 187
             AL    +M+  NV PD+ T   +I+ C + +D+     I  Y        ++ + V  
Sbjct: 425 NMALDTFCKMQIENVAPDATTVIKVIYGCRHIKDLRMAKSIHAYAVRNRF--ELNQSVMN 482

Query: 188 ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEA 246
           AL+  Y  CGE   + ++    E+    R  +  + ++S  A       ++ ++ ++++ 
Sbjct: 483 ALLAMYGDCGELSSSYKLFQKMEV----RMLISWNTIISGYAEIRDLEASVKLFFQMRQE 538

Query: 247 GCNLEPRAVIALIEHLN 263
           G   +   +I LI  ++
Sbjct: 539 GLQFDVVTLIGLISSIS 555



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 17/222 (7%)

Query: 31  LDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL 90
           L +  QMV+ E  P+  T+ ++L  C+   +   V   Y +     L+  +  F S I +
Sbjct: 630 LPLFRQMVKNEQEPNHITVLNLLPVCQNHQQGKSVH-CYAIRNFSTLE--TSFFTSAICM 686

Query: 91  NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD 150
             +  + D +  L + + E N++    ++NAI++   + K    A    ++M   N+KPD
Sbjct: 687 YSRFNNVDYSCKLFNSVGERNII----VWNAILSACVQCKLADTAFDFFRQMHFLNMKPD 742

Query: 151 SQTFSYLIHNCS--NEEDIIKYYEQL---KSAGGQITKYVFMALINAYTTCGEFEKARQV 205
             T   L+  C+     D+ +    L   K  GG  T  V  ALI+ ++ CG    AR++
Sbjct: 743 EVTMMSLVSACAQLGNSDLGECVTALILQKGFGG--TLLVVNALIDMHSRCGSLSFAREL 800

Query: 206 VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
               +  V   S   SA++++ + HG    A+ ++  + ++G
Sbjct: 801 F---DSSVVKDSVTWSAMINSYSMHGDCESALAIFSMMIDSG 839



 Score = 41.6 bits (96), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 52/254 (20%), Positives = 98/254 (38%), Gaps = 29/254 (11%)

Query: 29  VALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
            A D   QM    + P   T+ S++ AC +    +L   +  +I             ++I
Sbjct: 726 TAFDFFRQMHFLNMKPDEVTMMSLVSACAQLGNSDLGECVTALILQKGFGGTLLVVNALI 785

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
            ++ +      A  L D     +++  +  ++A++  Y    D + AL +   M  + VK
Sbjct: 786 DMHSRCGSLSFARELFDS----SVVKDSVTWSAMINSYSMHGDCESALAIFSMMIDSGVK 841

Query: 149 PDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYV------FMALINAYTTCGEFEKA 202
           PD  TF  ++  CS+   + +     KS   QI   +      +  +++     G  ++A
Sbjct: 842 PDDITFVIILSACSHSGFVEQARALFKSL--QIDHGITPRMEHYACMVDLLGRSGHLDEA 899

Query: 203 RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNL-------EPRAV 255
             VV    +  +    +  +L+ A   HG +        +I EA  NL        PR+ 
Sbjct: 900 YDVV--RSMSFRPSESLLESLLGACRFHGNS--------KIGEAVGNLLIDSQHGNPRSY 949

Query: 256 IALIEHLNSEGELN 269
           + L     S G+ N
Sbjct: 950 VMLSNIYASVGKWN 963


>gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa]
 gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 93/436 (21%), Positives = 182/436 (41%), Gaps = 77/436 (17%)

Query: 8   TPSSASYKKLIT-YSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           +PS  +Y  LI+ Y+ D L +  A+++  QMV+G +     T  ++L     + +     
Sbjct: 171 SPSIVTYNSLISAYARDGL-LKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAM 229

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R++  +     KPN  TF ++I ++     F     + +++K    +P    +N ++A +
Sbjct: 230 RVFAEMRAAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVF 289

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVF 186
            +         V KEM++A   P+  T++                               
Sbjct: 290 GQNGMDSEVSGVFKEMKRAGFVPERDTYN------------------------------- 318

Query: 187 MALINAYTTCGEFEKARQV---VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
             LI+AY+ CG F++A  +   +L+A I     +   +A+++ALA  G    +  ++ E+
Sbjct: 319 -TLISAYSRCGSFDQAMDIYKRMLEAGITPDLST--YNAVLAALARGGLWEQSEKIFAEM 375

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLI-LHCVRFKQL- 301
           K+  C        +L+    +  E+ R++ L EE+         C  +I  H V  K L 
Sbjct: 376 KDGRCKPNELTYCSLLHAYANGKEIGRMLALAEEI---------CSGVIEPHAVLLKTLV 426

Query: 302 --SSATDLLKQLKDKFKD-------------DEMAMEYHFSEIFCQIATTDPPDVQIGLD 346
             +S  DLL + +  F +             + M   Y   ++F +             +
Sbjct: 427 LVNSKCDLLVEAEVAFLELKRKGFSPDLSTLNAMLSIYGRRQMFTKTN-----------E 475

Query: 347 LLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAF 406
           +L F+ +E G  PS    + L+     + + +R+  + KE    G+  + +SY  +  A+
Sbjct: 476 ILNFM-NESGFTPSLATYNSLMYMHSRSENFERSEEVLKEILAKGIKPDTISYNTVIFAY 534

Query: 407 LASGNRKSASKLLSKM 422
             +G  K AS++ S+M
Sbjct: 535 CRNGRMKEASRIFSEM 550



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 114/241 (47%), Gaps = 5/241 (2%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVRRIYPM 71
           +Y  LIT      +   A+ V ++M +    P+  T N IL+   +    +N ++ ++  
Sbjct: 35  AYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIKGLFEG 94

Query: 72  ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131
           + +  + P+  T+ ++I+   +    + A ++  D+K M  +P    YNA++  Y + + 
Sbjct: 95  MKNAGVLPDEYTYNTLITCCRRGSLHEEAAAVFKDMKSMGFVPDKVTYNALLDVYGKSRR 154

Query: 132 VQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMA 188
            + A+ VL+EME     P   T++ LI   + +   ++ ++   Q+   G  +  + +  
Sbjct: 155 TKEAMEVLREMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINLDVFTYTT 214

Query: 189 LINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           L++ +   G+ E A +V  +      K      +AL+    + G+ ++ + V+EEIK + 
Sbjct: 215 LLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKNSC 274

Query: 248 C 248
           C
Sbjct: 275 C 275



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/291 (20%), Positives = 118/291 (40%), Gaps = 6/291 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           ITP  ++Y  ++           +  +  +M  G   P+  T  S+LHA     E   + 
Sbjct: 345 ITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNELTYCSLLHAYANGKEIGRML 404

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   IC   ++P++   ++++ +N K      A     +LK     P  S  NA+++ Y
Sbjct: 405 ALAEEICSGVIEPHAVLLKTLVLVNSKCDLLVEAEVAFLELKRKGFSPDLSTLNAMLSIY 464

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK---SAGGQITK 183
            R++       +L  M ++   P   T++ L++  S  E+  +  E LK   + G +   
Sbjct: 465 GRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSRSENFERSEEVLKEILAKGIKPDT 524

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             +  +I AY   G  ++A ++  +  E  +       +  V++ A+     DAI V   
Sbjct: 525 ISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDVITYNTFVASYAADSMFEDAIDVVRY 584

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH--DPDYWMDGCCRL 291
           + + GC        ++++        +  I  +  +H  DP    +  CRL
Sbjct: 585 MIKHGCKPNQNTYNSVVDGYCKHNHRDDAIMFISSLHELDPHISREEKCRL 635



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 81/391 (20%), Positives = 149/391 (38%), Gaps = 74/391 (18%)

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQ-- 144
           +IS+  K      A SLL+DL +         Y +++         + A+MV K+ME+  
Sbjct: 4   IISMLGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEEEG 63

Query: 145 ----------------------------------ANVKPDSQTFSYLIHNC---SNEEDI 167
                                             A V PD  T++ LI  C   S  E+ 
Sbjct: 64  CKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEEA 123

Query: 168 IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSA 226
              ++ +KS G    K  + AL++ Y      ++A +V+ + E+   S S V  ++L+SA
Sbjct: 124 AAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLISA 183

Query: 227 LASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
            A  G   +A+ +  ++ E G NL+      L+      G+    +++  E+        
Sbjct: 184 YARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAA----- 238

Query: 287 GCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDV----- 341
           GC            + +   L+K   ++ K  EM   +   +  C +     PD+     
Sbjct: 239 GC---------KPNICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCV-----PDIVTWNT 284

Query: 342 ------QIGLDL-LQFIKDEL---GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAG 391
                 Q G+D  +  +  E+   G  P R   + L+ A        +A  I+K    AG
Sbjct: 285 LLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRMLEAG 344

Query: 392 LPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           +  ++ +Y  +  A    G  + + K+ ++M
Sbjct: 345 ITPDLSTYNAVLAALARGGLWEQSEKIFAEM 375


>gi|297739749|emb|CBI29931.3| unnamed protein product [Vitis vinifera]
          Length = 838

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 21/223 (9%)

Query: 36  QMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIK 95
           QM    L+P+  T  SIL  C      +L  +I+  +     + N      +I +  K  
Sbjct: 405 QMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHG 464

Query: 96  DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFS 155
           + D+A  +L  L+E +++     + A++AGY +      AL + +EME   ++ D+  FS
Sbjct: 465 ELDTARGILQRLREEDVVS----WTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFS 520

Query: 156 YLIHNCSN-----------EEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204
             I  C+             +  I  Y +  S G  +   V   LI  Y+ CG  E A++
Sbjct: 521 SAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALASNV---LITLYSKCGSIEDAKR 577

Query: 205 VVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
                E+P K+     +A+++  + HG  S+A+ ++EE+K+ G
Sbjct: 578 EFF--EMPEKNVVS-WNAMITGYSQHGYGSEAVSLFEEMKQLG 617



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 18/174 (10%)

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           +I + +   + D+A  L DD+   N+    S +N +++G   KK     L +   M   N
Sbjct: 51  LIDIYLAHGEVDNAIKLFDDIPSSNV----SFWNKVISGLLAKKLASQVLGLFSLMITEN 106

Query: 147 VKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA----GGQITKYVFMALINAYTTCGEFEKA 202
           V PD  TF+ ++  CS  +   +  EQ+ +     G   +  V   LI+ Y+  G  + A
Sbjct: 107 VTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLA 166

Query: 203 RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI 256
           + +V +      S S V  A++S L+ +GR  +AI+++       C +   AVI
Sbjct: 167 K-LVFERLFLKDSVSWV--AMISGLSQNGREDEAILLF-------CQMHKSAVI 210



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/223 (19%), Positives = 102/223 (45%), Gaps = 14/223 (6%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL + E+M    + P   T+ S+L AC         ++++  +    +  +     S++ 
Sbjct: 298 ALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLD 357

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           L VK  D ++A+      +  N++    ++N ++  Y +  ++  +  +  +M+   + P
Sbjct: 358 LYVKCFDIETAHEYFLTTETENVV----LWNVMLVAYGQLGNLSESYWIFLQMQIEGLMP 413

Query: 150 DSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           +  T+  ++  C++   +    + + Q+  +G Q   YV   LI+ Y   GE + AR ++
Sbjct: 414 NQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGIL 473

Query: 207 --LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
             L  E  V       +A+++    H   ++A+ +++E++  G
Sbjct: 474 QRLREEDVVS-----WTAMIAGYTQHDLFAEALKLFQEMENQG 511



 Score = 46.6 bits (109), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 57/294 (19%), Positives = 128/294 (43%), Gaps = 32/294 (10%)

Query: 36  QMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETF--RSMISLNVK 93
           QM +  ++P+    +S+L AC +   F L  +++  I    L  +SETF   ++++L  +
Sbjct: 203 QMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGL--SSETFVCNALVTLYSR 260

Query: 94  IKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQT 153
             +  +A  +   +   + +     YN++++G  ++     AL + ++M+   +KPD  T
Sbjct: 261 WGNLIAAEQIFSKMHRRDRIS----YNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVT 316

Query: 154 FSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFM-----------ALINAYTTCGEFEKA 202
            + L+  C++     K        G Q+  YV             +L++ Y  C + E A
Sbjct: 317 VASLLSACASVGAGYK--------GKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETA 368

Query: 203 RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
            +  L  E        + + ++ A    G  S++  ++ +++  G         +++   
Sbjct: 369 HEYFLTTE---TENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTC 425

Query: 263 NSEGELNRLIQLLEEVHDPDYWMD--GCCRLILHCVRFKQLSSATDLLKQLKDK 314
            S G L+   Q+  +V    +  +   C  LI    +  +L +A  +L++L+++
Sbjct: 426 TSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREE 479


>gi|357167657|ref|XP_003581270.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Brachypodium distachyon]
          Length = 560

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/279 (21%), Positives = 120/279 (43%), Gaps = 6/279 (2%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           +P   S+   I   C +  V  AL++VE+M +    P T T N ++       E +  R 
Sbjct: 225 SPDVWSFNVAIKGVCQVGDVQKALELVERMAEFGCSPDTVTNNILVGGLCRVKEVSRGRE 284

Query: 68  IYPMICHHNL-KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +   +    +  PN  T+ S+IS   K    + A ++ +D+      P A  YN ++ GY
Sbjct: 285 VLRRLQRDGVCMPNVVTYTSVISGYCKSGRMEDAMAVYNDMIGCGTTPNAVTYNVLINGY 344

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
            +  ++  A+ V ++M      PD  TFS LI     C   +D ++ + ++     Q   
Sbjct: 345 GKAGNMGSAVAVYQQMILRRCPPDVVTFSTLIDGYCRCGQLDDAMRTWTEMSQYQIQPNA 404

Query: 184 YVFMALINAYTTCGEFEKARQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
           + F  +I ++       +A + +  L+    +  R+ + + ++  L   G+  +A ++  
Sbjct: 405 HTFSIIILSFCKQNRSAEALRFLKELNMRTDIAPRAFICNPVIDVLCKGGKVDEANLILM 464

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           E++  GC  +      LI     +G ++  I    ++ D
Sbjct: 465 EMEGKGCRPDKYTYTILIIGHCMKGRISEAITFFNKMVD 503



 Score = 45.8 bits (107), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 64/306 (20%), Positives = 113/306 (36%), Gaps = 55/306 (17%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           ++L I PS+ SY+ +I+  C   +   AL + +QM                   ++S  F
Sbjct: 113 SQLAIPPSAHSYRYVISMLCQSSRHTDALKLFDQMT------------------DQSGHF 154

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDF-DSAYSLLDDLKEMNLMPTASMYNA 121
                           PN+  F S ++ +     F D+A +LL    +      A  YN 
Sbjct: 155 ----------------PNAR-FLSFLAGSCANAGFLDAAAALLSKAPQFGCCVEAYAYNK 197

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANV-KPDSQTFSYLIHNCSNEEDI---IKYYEQLKSA 177
           +M  +     VQ A+ + +   Q     PD  +F+  I       D+   ++  E++   
Sbjct: 198 LMNSFIGCGRVQDAVALFEGWIQGGAYSPDVWSFNVAIKGVCQVGDVQKALELVERMAEF 257

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVV--LDAEIPVKSRSEVKSALVSALASHGRTSD 235
           G          L+       E  + R+V+  L  +          ++++S     GR  D
Sbjct: 258 GCSPDTVTNNILVGGLCRVKEVSRGREVLRRLQRDGVCMPNVVTYTSVISGYCKSGRMED 317

Query: 236 AIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEV----HDPDY-----W 284
           A+ VY ++   GC   P AV    LI      G +   + + +++      PD       
Sbjct: 318 AMAVYNDM--IGCGTTPNAVTYNVLINGYGKAGNMGSAVAVYQQMILRRCPPDVVTFSTL 375

Query: 285 MDGCCR 290
           +DG CR
Sbjct: 376 IDGYCR 381


>gi|242037815|ref|XP_002466302.1| hypothetical protein SORBIDRAFT_01g005290 [Sorghum bicolor]
 gi|241920156|gb|EER93300.1| hypothetical protein SORBIDRAFT_01g005290 [Sorghum bicolor]
          Length = 699

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 124/259 (47%), Gaps = 9/259 (3%)

Query: 33  VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92
           V  ++V+  ++P  +T+N ++ A  ES   +L    +  +      PNS TF  +I+   
Sbjct: 162 VYTEIVKAGVLPDVDTLNLLIEALCESGRLDLALIQFGRMSKKRCTPNSHTFEVLITALC 221

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
                D A  L D + ++   P +S +  +M  + +   V+ A+ + + M++ N++   Q
Sbjct: 222 SHSRADEAVKLFDKMLQLRCSPDSSFHAQVMPLFCKFSKVKEAITLHRMMKEDNIQLSMQ 281

Query: 153 TFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA 209
            +S LI   C N+  +D    ++++ ++G       ++ +I+ Y T G+F  A + + + 
Sbjct: 282 LYSALIRCLCENQLLDDTTIVFKEMIASGHAPMASTYVDMIHCYCTKGKFHSAVRFLEEN 341

Query: 210 EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG-CNLEPRAVIALIEHLNSEGEL 268
           ++   + SE  +AL+S L  + R  D++   E++   G  + E   ++  I    +EG +
Sbjct: 342 DV---TESEPYNALLSWLCRNDRLQDSVSCLEKLHNRGFVDCESWNIV--ITQFCNEGNI 396

Query: 269 NRLIQLLEEVHDPDYWMDG 287
            R  +L+  +    +  DG
Sbjct: 397 RRASELIGRMVVSSFAPDG 415



 Score = 40.0 bits (92), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 60/307 (19%), Positives = 122/307 (39%), Gaps = 36/307 (11%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           +K   TP+S +++ LIT  C   +   A+ + ++M+Q    P +     ++    +  + 
Sbjct: 202 SKKRCTPNSHTFEVLITALCSHSRADEAVKLFDKMLQLRCSPDSSFHAQVMPLFCKFSKV 261

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
                ++ M+   N++ + + + ++I    + +  D    +  ++      P AS Y  +
Sbjct: 262 KEAITLHRMMKEDNIQLSMQLYSALIRCLCENQLLDDTTIVFKEMIASGHAPMASTYVDM 321

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAG---- 178
           +  Y  K     A+  L+E +    +P +   S+L  N    +D +   E+L + G    
Sbjct: 322 IHCYCTKGKFHSAVRFLEENDVTESEPYNALLSWLCRN-DRLQDSVSCLEKLHNRGFVDC 380

Query: 179 -------------GQITK-----------------YVFMALINAYTTCGEFEKARQVVLD 208
                        G I +                   + A+I+ Y   G +  A  +   
Sbjct: 381 ESWNIVITQFCNEGNIRRASELIGRMVVSSFAPDGTTYSAVISCYCRLGLYIDALNMFRR 440

Query: 209 AEIPVKS-RSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
           A I   S  SE  S LV  L    R  +AI V++     GC+L  +++  LI+     G+
Sbjct: 441 ASISNLSLNSESFSQLVEVLCHAKRIEEAIEVFKYHYNRGCSLTNKSLDMLIQGSCMSGK 500

Query: 268 LNRLIQL 274
           ++  ++L
Sbjct: 501 IHEAVKL 507


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 116/246 (47%), Gaps = 14/246 (5%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL++ ++M++  + P   T+ S++ AC +S    L R+++  I  H    N +   ++I 
Sbjct: 204 ALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALID 263

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           L +K  + ++A  L + L   +++     +N ++ GY      + AL++ +EM ++   P
Sbjct: 264 LYIKCGEVETACGLFEGLSYKDVIS----WNTLIGGYTHMNLYKEALLLFQEMLRSGESP 319

Query: 150 DSQTFSYLIHNCSNEEDI-----IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204
           +  T   ++  C++   I     I  Y   +  G         +LI+ Y  CG+ E A+Q
Sbjct: 320 NDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQ 379

Query: 205 VVLDAEIPVKSRS-EVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
            V D+   + +RS    +A++   A HGR + A  ++  +++     +    + L+   +
Sbjct: 380 -VFDS---ILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACS 435

Query: 264 SEGELN 269
             G L+
Sbjct: 436 HSGMLD 441



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 41/196 (20%), Positives = 79/196 (40%), Gaps = 30/196 (15%)

Query: 37  MVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKD 96
           M+   L+P+  T   +L +C +S  F   ++I+  +       +     S+IS+ V+   
Sbjct: 79  MISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGR 138

Query: 97  FDSAYSLLDDLKEMNLMPTASM---------------------------YNAIMAGYFRK 129
            + A  + D     +++   ++                           +NA+++GY   
Sbjct: 139 LEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAET 198

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVF 186
            + + AL + KEM + NV+PD  T   ++  C+    I    + +  +   G      + 
Sbjct: 199 GNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIV 258

Query: 187 MALINAYTTCGEFEKA 202
            ALI+ Y  CGE E A
Sbjct: 259 NALIDLYIKCGEVETA 274


>gi|403223056|dbj|BAM41187.1| pentatricopeptide repeat containing protein [Theileria orientalis
            strain Shintoku]
          Length = 1735

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 126/262 (48%), Gaps = 10/262 (3%)

Query: 26   KVHVALDVVEQM-VQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETF 84
            +V  A+ + E M V+G++ P+T    +++    ++ + +   +I+ M+    + PN+ T+
Sbjct: 1365 RVDSAMRLFEDMKVRGQVKPNTIMYTTLIKGYGQNKQLDKAMKIFRMMQQDQVVPNTVTY 1424

Query: 85   RSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQ 144
             S+I    ++ D   A SLL+D+   ++ P    ++ I+ GY  + D+  +  +L  M +
Sbjct: 1425 NSIIDACARVGDMSGATSLLEDMLMNDIEPDLITFSTIIKGYCVQSDMDKSFQLLSIMYE 1484

Query: 145  ANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINAYTTCGEFEK 201
              + PD   ++ L+  C     +    K ++Q++      + +    LI  Y   G  +K
Sbjct: 1485 RGIMPDVILYNSLLEGCVKSGLLWLCEKLWKQMQEYDIPPSNFTLTILIKMYGRSGHLDK 1544

Query: 202  ARQVVLDAEIPVKS----RSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIA 257
              +  L  E+P +      + V + L+SA  ++G+ +  + +Y+ +K+ G   + +    
Sbjct: 1545 VFE--LADELPKRYNFSINTHVYTCLMSACITNGKYAMVLDIYKYMKKNGVKPDAKTFET 1602

Query: 258  LIEHLNSEGELNRLIQLLEEVH 279
            +I+ L+  G      Q++ EV+
Sbjct: 1603 IIQGLSRGGLFREAAQVVMEVY 1624


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 134/304 (44%), Gaps = 21/304 (6%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L I  S  ++  +I   C   K+  A D V  M    + P+  T N+I+H    S    
Sbjct: 214 RLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVE 273

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               I   +    ++P+S T+ S+IS   K    + A  + +++ +  L P+A +YN ++
Sbjct: 274 AADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLI 333

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQ 180
            G+  K ++  A     EM +  + P   T++ LIH    E+   +     ++++  G  
Sbjct: 334 DGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGIS 393

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEI---PVKSRSEVKSALVSALASHGRTSDAI 237
                +  LIN Y  C   +KA   +L  E+    +K   +  ++L+  L+   R  +A 
Sbjct: 394 PDAITYNILINGYCRCANAKKA--FLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEAD 451

Query: 238 IVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVH----DPD-----YWMD 286
            ++++I   G  + P A++  ALI+   S   +    +LL+++      PD       M 
Sbjct: 452 DLFKKITSEG--VLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQ 509

Query: 287 GCCR 290
           G CR
Sbjct: 510 GHCR 513



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 90/203 (44%), Gaps = 3/203 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I+P + +Y  LI   C       A  + ++M+   + P+ +T  S+LH   +        
Sbjct: 392 ISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEAD 451

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  I    + P++  F ++I  +    +   A+ LL D+  M + P    +N IM G+
Sbjct: 452 DLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGH 511

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITK 183
            R+  V+ A  +  EM++  +KPD  +F+ LI   S   DI    +   ++   G   T 
Sbjct: 512 CREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTV 571

Query: 184 YVFMALINAYTTCGEFEKARQVV 206
             + AL+       E + A +++
Sbjct: 572 LTYNALVQGLCKNQEGDLAEELL 594



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 135/322 (41%), Gaps = 59/322 (18%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +I P S +Y  LI+  C   ++  A  + E+MVQ  L PS    N+++         ++ 
Sbjct: 286 KIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMA 345

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
                 +    + P   T+ S+I      +  D A  ++ +++E  + P A  YN ++ G
Sbjct: 346 SAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILING 405

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH-------------------------- 159
           Y R  + + A ++  EM  + +KP  +T++ L+H                          
Sbjct: 406 YCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPD 465

Query: 160 ----------NCSNEE-----DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204
                     +CSN       +++K  +++K    ++T   F  ++  +   G+ E+AR+
Sbjct: 466 AIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVT---FNTIMQGHCREGKVEEARE 522

Query: 205 VVLDAEIPVKSRSEVK------SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
           +  + +     R  +K      + L+S  +  G   DA  V  E+ + G N       AL
Sbjct: 523 LFDEMK-----RRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNAL 577

Query: 259 IEHL--NSEGELNRLIQLLEEV 278
           ++ L  N EG+L    +LL+E+
Sbjct: 578 VQGLCKNQEGDLAE--ELLKEM 597



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 111/252 (44%), Gaps = 10/252 (3%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           SS  +  LI   CD+ +   A +    M +  ++P+ ET NS+L    +         +Y
Sbjct: 150 SSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLY 209

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
             +    +K +  TF  MI++  K      A   +  ++   + P    YN I+ GY   
Sbjct: 210 AEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSS 269

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVF 186
             V+ A  +L  M++  ++PDS T+  LI     +   E+  K +E++   G + +  ++
Sbjct: 270 GRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIY 329

Query: 187 MALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS---ALVSALASHGRTSDAIIVYEEI 243
             LI+ +   G  + A       E+  K  S   S   +L+ AL    RT +A  + +EI
Sbjct: 330 NTLIDGFCNKGNLDMAS--AYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEI 387

Query: 244 KEAGCNLEPRAV 255
           +E G  + P A+
Sbjct: 388 QEKG--ISPDAI 397



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 73/153 (47%), Gaps = 2/153 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           + P +  +  LI   C    V  A ++++ M + ++ P   T N+I+   C E  +    
Sbjct: 462 VLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREG-KVEEA 520

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           R ++  +    +KP+  +F ++IS   +  D   A+ + +++ +    PT   YNA++ G
Sbjct: 521 RELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQG 580

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
             + ++   A  +LKEM    + PD  T+  LI
Sbjct: 581 LCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLI 613


>gi|224136310|ref|XP_002326829.1| predicted protein [Populus trichocarpa]
 gi|222835144|gb|EEE73579.1| predicted protein [Populus trichocarpa]
          Length = 664

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 122/276 (44%), Gaps = 16/276 (5%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICH-HNLKPNSETFRSMI 88
           A+ +   M    + PS  T NS+L    +    N+   ++  +C  + + P++ TF  +I
Sbjct: 116 AIKLFSLMKSSGVSPSVITFNSLLLILLKRGRTNMAHSVFDEMCGTYGVTPDTYTFNILI 175

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM--EQAN 146
               K    D  +    ++   N  P    YN ++ G  R   V+ A  V+K M  +  +
Sbjct: 176 RGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVRIAHNVVKGMVKKMKD 235

Query: 147 VKPDSQTFSYLIHN-CSNEE--DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203
           + PD  T++ L+   C  +E  + +  +E++ S G +     +  LI       +F+K +
Sbjct: 236 LSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNTLIKGLCEVQKFDKIK 295

Query: 204 QVVLDAEIPVKSRSEVK-----SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
           +++  A   V  R  V      + L++A    G   +A+ +++++KE     +      L
Sbjct: 296 EILGGA---VGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSATYSVL 352

Query: 259 IEHLNSEGELNRLIQLLEEVHDPDYWM--DGCCRLI 292
           I +L   G+  R  QL +++ D D  +  DGC  L+
Sbjct: 353 IRNLCQRGDFERAEQLFDKLSDEDILLRDDGCTPLV 388


>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
 gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
          Length = 847

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 112/241 (46%), Gaps = 12/241 (4%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   ++  +I   C  LK+  AL +VE+M    + P   T NS+L+   ++ +   V   
Sbjct: 357 PDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNET 416

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +     +PN+ T+  +I    KI   + A  ++  + +  L+P    +N ++ G+ R
Sbjct: 417 FEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCR 476

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYV 185
             D+ GA ++ +++++      + TF+ LI   S++ ++    K + ++ S G +   Y 
Sbjct: 477 NGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYT 536

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
           +  L++   +C      R  V  AE+       V    V ++A+ GR  +++ +   + E
Sbjct: 537 YRVLVDG--SCKAANVDRAYVHLAEM-------VSKGFVPSMATFGRVLNSLAMNHRVSE 587

Query: 246 A 246
           A
Sbjct: 588 A 588



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 95/219 (43%), Gaps = 5/219 (2%)

Query: 35  EQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKI 94
           ++M++ ++ P   T N++LHA  +  +      +   +    +  N  T    I    + 
Sbjct: 104 DEMLRRDVFPDVATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEG 163

Query: 95  KDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTF 154
              + A +L++ + +  + P    YN +M G  +   VQ A   L+ M      PD  T+
Sbjct: 164 GRLEEAVALVESM-DAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTY 222

Query: 155 SYLIHNCSNEEDIIKYYEQLKSA---GGQITKYVFMALINAYTTCGEFEKARQVVLDAEI 211
           + +I      + + +  E LK A   G    +  + +LIN     G+ E+A ++  +A+ 
Sbjct: 223 NTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQA 282

Query: 212 P-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
             +K    V ++LV  L   G    A+ V  E+ E GC+
Sbjct: 283 KDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCH 321



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/253 (20%), Positives = 104/253 (41%), Gaps = 6/253 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P   +Y  L+   C   KV  A   + +M+    +P   T N+I+    +        
Sbjct: 180 IAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEAT 239

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +          P+  T+ S+I+      D + A  L ++ +  +L P   +YN+++ G 
Sbjct: 240 ELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGL 299

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA---GGQITK 183
            R+  +  AL V+ EM +    PD  T++ +I+      +I      +  A   G     
Sbjct: 300 CRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDV 359

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           + F  +I+ Y    + + A Q+V    +  +   +   +++++ L   G+  +    +EE
Sbjct: 360 FTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEE 419

Query: 243 IKEAGCNLEPRAV 255
           +   GC   P A+
Sbjct: 420 MILKGC--RPNAI 430



 Score = 42.7 bits (99), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 36/177 (20%), Positives = 73/177 (41%), Gaps = 35/177 (19%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-C----------- 56
           P++ +Y  LI   C + ++  A  V+ +M Q  LVP T + N+++H  C           
Sbjct: 427 PNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLL 486

Query: 57  -----EESYE-----FNLV-------------RRIYPMICHHNLKPNSETFRSMISLNVK 93
                E+ Y      FN++              +I+  +     KP+  T+R ++  + K
Sbjct: 487 FQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCK 546

Query: 94  IKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD 150
             + D AY  L ++     +P+ + +  ++        V  A+ ++  M +  V P+
Sbjct: 547 AANVDRAYVHLAEMVSKGFVPSMATFGRVLNSLAMNHRVSEAVAIIHIMVRMGVVPE 603


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 116/246 (47%), Gaps = 14/246 (5%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL++ ++M++  + P   T+ S++ AC +S    L R+++  I  H    N +   ++I 
Sbjct: 219 ALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALID 278

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           L +K  + ++A  L + L   +++     +N ++ GY      + AL++ +EM ++   P
Sbjct: 279 LYIKCGEVETACGLFEGLSYKDVIS----WNTLIGGYTHMNLYKEALLLFQEMLRSGESP 334

Query: 150 DSQTFSYLIHNCSNEEDI-----IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204
           +  T   ++  C++   I     I  Y   +  G         +LI+ Y  CG+ E A+Q
Sbjct: 335 NDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQ 394

Query: 205 VVLDAEIPVKSRS-EVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
            V D+   + +RS    +A++   A HGR + A  ++  +++     +    + L+   +
Sbjct: 395 -VFDS---ILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACS 450

Query: 264 SEGELN 269
             G L+
Sbjct: 451 HSGMLD 456



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 41/196 (20%), Positives = 79/196 (40%), Gaps = 30/196 (15%)

Query: 37  MVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKD 96
           M+   L+P+  T   +L +C +S  F   ++I+  +       +     S+IS+ V+   
Sbjct: 94  MISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGR 153

Query: 97  FDSAYSLLDDLKEMNLMPTASM---------------------------YNAIMAGYFRK 129
            + A  + D     +++   ++                           +NA+++GY   
Sbjct: 154 LEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAET 213

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVF 186
            + + AL + KEM + NV+PD  T   ++  C+    I    + +  +   G      + 
Sbjct: 214 GNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIV 273

Query: 187 MALINAYTTCGEFEKA 202
            ALI+ Y  CGE E A
Sbjct: 274 NALIDLYIKCGEVETA 289


>gi|225461712|ref|XP_002283237.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g53330-like [Vitis vinifera]
          Length = 464

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 128/289 (44%), Gaps = 14/289 (4%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVR 66
           TP   +Y  LI   C    +  A +V ++M++  + P+  T  +++   C +S      R
Sbjct: 145 TPDVCTYNVLINACCSSGSLGDAWNVFDEMLRKHVCPNVVTFGTLISGLCGDSRLDEAFR 204

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
               M+   N+KPN+  + S++    ++ +   A+ L  ++    L   + +Y+ ++A  
Sbjct: 205 LKEDMVKVFNVKPNAFVYASLMKGLCRVNELSLAFELKKEMVANKLRLDSGIYSTLIAAL 264

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY---EQLKSAGGQITK 183
           F+        +VL+EM +   KPD+ T++ +I    NE+D    Y   E++ + G +   
Sbjct: 265 FKVGRKDEVFVVLEEMRENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEEMVAKGCKPDV 324

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKS-RSEVKS--ALVSALASHGRTSDAIIVY 240
             +  +I+     G++ +A  +  D  +P +    +V S   L   L    + ++A  + 
Sbjct: 325 ISYNVIISGLCKEGKWREANDLFED--MPRRGCTPDVGSYRILFDGLCEGMQFNEAAFIL 382

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE-----EVHDPDYW 284
           +E+   G   +  +    +E L  EG L  L ++L       V D D W
Sbjct: 383 DEMVFKGYAPKSASKTKFVEALCQEGNLELLCKVLNSLVKGNVIDGDAW 431



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 103/232 (44%), Gaps = 9/232 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQ-GELVPSTETINSILHACEESYEFNLV 65
           + P+  ++  LI+  C   ++  A  + E MV+   + P+     S++       E +L 
Sbjct: 179 VCPNVVTFGTLISGLCGDSRLDEAFRLKEDMVKVFNVKPNAFVYASLMKGLCRVNELSLA 238

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +   +  + L+ +S  + ++I+   K+   D  + +L++++E    P    YNA+++G
Sbjct: 239 FELKKEMVANKLRLDSGIYSTLIAALFKVGRKDEVFVVLEEMRENGCKPDTVTYNAMISG 298

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQIT 182
           +  +KD + A  VL+EM     KPD  +++ +I     E    +    +E +   G    
Sbjct: 299 FCNEKDFEAAYGVLEEMVAKGCKPDVISYNVIISGLCKEGKWREANDLFEDMPRRGCTPD 358

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKS---RSEVKSALVSALASHG 231
              +  L +      +F +A   +LD E+  K    +S  K+  V AL   G
Sbjct: 359 VGSYRILFDGLCEGMQFNEA-AFILD-EMVFKGYAPKSASKTKFVEALCQEG 408


>gi|297853270|ref|XP_002894516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297340358|gb|EFH70775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 477

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/270 (21%), Positives = 118/270 (43%), Gaps = 15/270 (5%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELV---PSTETINSILHACEESYEFNLV 65
           P++A    L+  +C   +  +A DVVEQ ++ +     P   + N+ILH+     ++ L+
Sbjct: 184 PTTACTFNLLICTCG--EAGLARDVVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQYKLI 241

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +Y  +      P+  T+  ++  N ++   D  Y LLD++ +    P    YN ++  
Sbjct: 242 DWVYEQMLEDGFSPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNILLHH 301

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI--IKYY-EQLKSAGGQIT 182
                    AL +L  M +  V+P    F+ L+   S    +   KY+ +++   G    
Sbjct: 302 LATGNKPLAALNLLTHMREVGVEPGVIHFTTLVDGLSRAGKLEACKYFMDEMVKVGCTPD 361

Query: 183 KYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAII 238
              +  +I  Y + GE EKA    +++    ++P        ++++      G+  +A  
Sbjct: 362 VVCYTVMITGYISGGELEKAEEMFKEMTEKGQLP---NVFTYNSMIRGFCMAGKFKEACS 418

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGEL 268
           + +E++  GCN        L+ +L + G++
Sbjct: 419 LLKEMESRGCNPNFVVYSTLVNNLRNAGKV 448


>gi|15233259|ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010
 gi|9294448|dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642241|gb|AEE75762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 642

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 90/408 (22%), Positives = 171/408 (41%), Gaps = 28/408 (6%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHH-NLKPNSETFR 85
           V  AL V  Q    +  P++ T NS++    +  +   V  +Y  +C+  +  P++ T+ 
Sbjct: 178 VSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYS 237

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           ++IS   K+   DSA  L D++K+  + PT  +Y  ++  YF+   V+ AL + +EM++A
Sbjct: 238 ALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRA 297

Query: 146 NVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA--GGQITKYVFM-ALINAYTTCGEFEKA 202
              P   T++ LI        + + Y   K     G     VF+  L+N     G  E+ 
Sbjct: 298 GCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEEL 357

Query: 203 RQVVLDAEI-----PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIA 257
             V  +  +      V S + V  AL     S    S+    ++++K    +        
Sbjct: 358 TNVFSEMGMWRCTPTVVSYNTVIKAL---FESKAHVSEVSSWFDKMKADSVSPSEFTYSI 414

Query: 258 LIEHLNSEGELNRLIQLLEEVHDPDY--WMDGCCRLILHCVRFKQLSSATDLLKQLKDKF 315
           LI+       + + + LLEE+ +  +       C LI    + K+  +A +L K+LK+ F
Sbjct: 415 LIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENF 474

Query: 316 KDDE----MAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGAC 371
            +        M  HF +            +   +DL   +K++ G  P     + L+   
Sbjct: 475 GNVSSRVYAVMIKHFGKC---------GKLSEAVDLFNEMKNQ-GSGPDVYAYNALMSGM 524

Query: 372 VNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLL 419
           V A  +  A+ + ++ E  G   ++ S+  +   F  +G  + A ++ 
Sbjct: 525 VKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMF 572



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 73/400 (18%), Positives = 163/400 (40%), Gaps = 48/400 (12%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+   Y  L+     + KV  ALD+ E+M +    P+  T   ++    ++   +   
Sbjct: 264 MQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAY 323

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
             Y  +    L P+     +++++  K+   +   ++  ++      PT   YN ++   
Sbjct: 324 GFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKAL 383

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVF 186
           F  K                               ++  ++  +++++K+     +++ +
Sbjct: 384 FESK-------------------------------AHVSEVSSWFDKMKADSVSPSEFTY 412

Query: 187 MALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSA---LVSALASHGRTSDAIIVYEEI 243
             LI+ Y      EKA  ++L  E+  K      +A   L++AL    R   A  +++E+
Sbjct: 413 SILIDGYCKTNRVEKA--LLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKEL 470

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYWMDGCCRLILHCVRFK 299
           KE   N+  R    +I+H    G+L+  + L  E+ +    PD +      L+   V+  
Sbjct: 471 KENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNA--LMSGMVKAG 528

Query: 300 QLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPP 359
            ++ A  LL+++++     ++      + I    A T  P  +  +++ + IK   G+ P
Sbjct: 529 MINEANSLLRKMEENGCRADIN---SHNIILNGFARTGVP--RRAIEMFETIKHS-GIKP 582

Query: 360 SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSY 399
                + LLG   +A   + A  + +E ++ G  Y+ ++Y
Sbjct: 583 DGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITY 622


>gi|473874|gb|AAA17740.1| a membrane-associated salt-inducible protein [Nicotiana tabacum]
          Length = 435

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/253 (20%), Positives = 110/253 (43%), Gaps = 4/253 (1%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A  + E +++  L P     N+I+ A       +   RI   +     +P S TF  +I 
Sbjct: 15  AFAIFEDVIRDGLKPDVVLYNNIIRAFCGMGNMDRALRIVEQMKKERHRPTSRTFMPIIH 74

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              K      A  + D ++    +PT   YNA++ G   K+ +  A+ V+ EM  A ++P
Sbjct: 75  AFAKAGAIRKALDVFDMMRRSGCIPTVQTYNALILGLVEKRQMDKAVEVVDEMLLAGIRP 134

Query: 150 DSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           + +T++ ++   ++  D  K   Y+ ++K  G ++  Y + AL+ A    G  E A  V 
Sbjct: 135 NERTYTTIMDGYASLGDTGKAFEYFSRIKDEGLELDVYTYEALLKACCKSGRIESALAVT 194

Query: 207 LDAEIPVKSRSE-VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
            +       R+  V + L+   A      +A  + +++++ G   +     + +      
Sbjct: 195 KEMNAKNIPRNTFVYNILIDGWARRSDVWEAADLMQQMRQEGVQPDIHTYTSFVNACCKA 254

Query: 266 GELNRLIQLLEEV 278
           G++ + +  ++E+
Sbjct: 255 GDMQKAMNTIQEM 267



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 114/280 (40%), Gaps = 40/280 (14%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P    Y  +I   C +  +  AL +VEQM +    P++ T   I+HA  ++       
Sbjct: 27  LKPDVVLYNNIIRAFCGMGNMDRALRIVEQMKKERHRPTSRTFMPIIHAFAKAGAIRKAL 86

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++ M+      P  +T+ ++I   V+ +  D A  ++D++    + P    Y  IM GY
Sbjct: 87  DVFDMMRRSGCIPTVQTYNALILGLVEKRQMDKAVEVVDEMLLAGIRPNERTYTTIMDGY 146

Query: 127 F-------------RKKD----------------------VQGALMVLKEMEQANVKPDS 151
                         R KD                      ++ AL V KEM   N+  ++
Sbjct: 147 ASLGDTGKAFEYFSRIKDEGLELDVYTYEALLKACCKSGRIESALAVTKEMNAKNIPRNT 206

Query: 152 QTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
             ++ LI   +   D+ +     +Q++  G Q   + + + +NA    G+ +KA   + +
Sbjct: 207 FVYNILIDGWARRSDVWEAADLMQQMRQEGVQPDIHTYTSFVNACCKAGDMQKAMNTIQE 266

Query: 209 AEIPVKSRSEVKSALVSALASHGRTSD-AIIVYEEIKEAG 247
            +  V     +K   +S    H    + A+  +EE+K++G
Sbjct: 267 MK-RVGLNPMLKPIPLSYTVGHASLPEKALKCFEEMKKSG 305



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/282 (21%), Positives = 130/282 (46%), Gaps = 12/282 (4%)

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           +I+  + +KD+ +A+++ +D+    L P   +YN I+  +    ++  AL ++++M++  
Sbjct: 2   LINGFIYLKDWANAFAIFEDVIRDGLKPDVVLYNNIIRAFCGMGNMDRALRIVEQMKKER 61

Query: 147 VKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203
            +P S+TF  +IH  +    I K    ++ ++ +G   T   + ALI       + +KA 
Sbjct: 62  HRPTSRTFMPIIHAFAKAGAIRKALDVFDMMRRSGCIPTVQTYNALILGLVEKRQMDKAV 121

Query: 204 QVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
           +VV +  +  ++      + ++   AS G T  A   +  IK+ G  L+     AL++  
Sbjct: 122 EVVDEMLLAGIRPNERTYTTIMDGYASLGDTGKAFEYFSRIKDEGLELDVYTYEALLKAC 181

Query: 263 NSEGELNRLIQLLEEVHDPDYWMDGCCRLIL--HCVRFKQLSSATDLLKQLKDKFKDDEM 320
              G +   + + +E++  +   +     IL     R   +  A DL++Q++ +    ++
Sbjct: 182 CKSGRIESALAVTKEMNAKNIPRNTFVYNILIDGWARRSDVWEAADLMQQMRQEGVQPDI 241

Query: 321 AMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRK 362
                F    C+       D+Q  ++ +Q +K  +GL P  K
Sbjct: 242 HTYTSFVNACCKAG-----DMQKAMNTIQEMK-RVGLNPMLK 277


>gi|297816792|ref|XP_002876279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322117|gb|EFH52538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 97/468 (20%), Positives = 186/468 (39%), Gaps = 83/468 (17%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHAC----------- 56
           +P+S ++  LI       ++  AL+  ++M    L PS   +++I+              
Sbjct: 370 SPNSVTFSVLIERFSKNGEMEKALEFYKKMESLGLTPSVFHVHTIIQGWLKGQKHEEALK 429

Query: 57  --EESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMP 114
             +ES+E  L       IC+           +++S   K    D A  LL  ++   + P
Sbjct: 430 LFDESFETGLAN---VFICN-----------TILSWLCKQGKIDKATELLRKMESRGIGP 475

Query: 115 TASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYY 171
               YN +M  + RKK++  A  V   M +  +KP++ T+S LI  C    +E+++++  
Sbjct: 476 NVVSYNNVMLAHCRKKNMDLARTVFSNMLEKGLKPNNYTYSILIDGCFKNHDEQNVLEVV 535

Query: 172 EQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK----SALVSAL 227
            Q+ S+  ++   V+  +IN     G+  KAR+++  A +  + R  V     ++++   
Sbjct: 536 NQMTSSNIEVNGVVYQTIINGLCKVGQTSKARELL--ANMIEEKRFCVSCMSYNSIIDGF 593

Query: 228 ASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD- 286
              G    A+  YEE+   G +       +L++ L     +++ +++ +E+ +    +D 
Sbjct: 594 IKEGEMDYAVAAYEEMCANGISPNVITYTSLMDGLCKNNRMDQALEMRDEMKNKGVKLDI 653

Query: 287 -GCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGL 345
                LI    +   + SA+ L                  FSE+                
Sbjct: 654 PAYGALIHGFCKKSNMESASAL------------------FSELL--------------- 680

Query: 346 DLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKA 405
                   E GL PS+   + L+    N  ++  A  ++K+    GL  ++ +Y  +   
Sbjct: 681 --------EEGLNPSQPVYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDG 732

Query: 406 FLASGNRKSASKLLSKMPKDDPHVRFVIQACKQTYTIPSLQKERGFEK 453
            L  GN   AS L ++M      V  V      T  +  L K+  F K
Sbjct: 733 LLKEGNLILASDLYTEMQA----VGLVPDEIMYTVIVNGLSKKGQFVK 776



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/287 (20%), Positives = 125/287 (43%), Gaps = 9/287 (3%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGE-LVPSTETINSILHACEESYEFNLVRRIYPMI 72
           Y+ +I   C + +   A +++  M++ +    S  + NSI+    +  E +     Y  +
Sbjct: 550 YQTIINGLCKVGQTSKARELLANMIEEKRFCVSCMSYNSIIDGFIKEGEMDYAVAAYEEM 609

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
           C + + PN  T+ S++    K    D A  + D++K   +      Y A++ G+ +K ++
Sbjct: 610 CANGISPNVITYTSLMDGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIHGFCKKSNM 669

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITKYVFMAL 189
           + A  +  E+ +  + P    ++ LI    N  N    +  Y+++   G +     +  L
Sbjct: 670 ESASALFSELLEEGLNPSQPVYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTL 729

Query: 190 INAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGC 248
           I+     G    A  +  + +       E+  + +V+ L+  G+    + ++EE+K+   
Sbjct: 730 IDGLLKEGNLILASDLYTEMQAVGLVPDEIMYTVIVNGLSKKGQFVKVVKMFEEMKKN-- 787

Query: 249 NLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL 293
           N+ P  +I  A+I     EG L+   +L +E+ D     DG    IL
Sbjct: 788 NVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDIL 834



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 72/152 (47%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + PS   Y  LI+   +L  +  ALD+ ++M++  L     T  +++    +     L  
Sbjct: 684 LNPSQPVYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKEGNLILAS 743

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +Y  +    L P+   +  +++   K   F     + +++K+ N+ P   +YNA++AG+
Sbjct: 744 DLYTEMQAVGLVPDEIMYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGH 803

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
           +R+ ++  A  +  EM    + PD  TF  L+
Sbjct: 804 YREGNLDEAFRLHDEMLDKGILPDGATFDILV 835



 Score = 45.8 bits (107), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 73/425 (17%), Positives = 165/425 (38%), Gaps = 15/425 (3%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+D+V QM++  ++P    +N  L A  +       + +Y  +    +  ++ T + ++ 
Sbjct: 181 AVDIVNQMLELGVIPFVPYVNRTLSALVQRNSITEAKELYSRMVAIGVDGDNGTTQLLMR 240

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANV-K 148
            +++ +    A  +     E    P + +Y+  +    +  ++  A  +L+EM++  +  
Sbjct: 241 ASLREEKPAEALEVFSRAIERGAEPDSLLYSLAVQACCKTLNLAMANSLLREMKEKKLCV 300

Query: 149 PDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           P  +T++ +I       N ED I++ +++ S G  +      +LI  +    +   A  +
Sbjct: 301 PSQETYTSVILASVKQGNMEDAIRWKDEMVSDGISMNVVAATSLITGHCKNNDLGSALDL 360

Query: 206 VLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
               E    S + V  S L+   + +G    A+  Y++++  G       V  +I+    
Sbjct: 361 FYKMENEGPSPNSVTFSVLIERFSKNGEMEKALEFYKKMESLGLTPSVFHVHTIIQGWLK 420

Query: 265 EGELNRLIQLLEEVHDPDYWMDGCCRLILHCV-RFKQLSSATDLLKQLKDKFKDDEMAME 323
             +    ++L +E  +        C  IL  + +  ++  AT+LL++++ +     +   
Sbjct: 421 GQKHEEALKLFDESFETGLANVFICNTILSWLCKQGKIDKATELLRKMESRGIGPNVVSY 480

Query: 324 YHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLI 383
            +     C+    D         L      E GL P+      L+  C    D +    +
Sbjct: 481 NNVMLAHCRKKNMDLARTVFSNML------EKGLKPNNYTYSILIDGCFKNHDEQNVLEV 534

Query: 384 WKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQACKQTYTIP 443
             +  ++ +  N + Y  +       G    A +LL+ M ++    RF +        I 
Sbjct: 535 VNQMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEK---RFCVSCMSYNSIID 591

Query: 444 SLQKE 448
              KE
Sbjct: 592 GFIKE 596



 Score = 38.9 bits (89), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 32/199 (16%), Positives = 84/199 (42%), Gaps = 3/199 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I+P+  +Y  L+   C   ++  AL++ ++M    +        +++H   +        
Sbjct: 614 ISPNVITYTSLMDGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIHGFCKKSNMESAS 673

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +    L P+   + S+IS    + +  +A  L   + +  L      Y  ++ G 
Sbjct: 674 ALFSELLEEGLNPSQPVYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGL 733

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKYYEQLKSAGGQITK 183
            ++ ++  A  +  EM+   + PD   ++ +++  S +     ++K +E++K        
Sbjct: 734 LKEGNLILASDLYTEMQAVGLVPDEIMYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNV 793

Query: 184 YVFMALINAYTTCGEFEKA 202
            ++ A+I  +   G  ++A
Sbjct: 794 LIYNAVIAGHYREGNLDEA 812


>gi|357150350|ref|XP_003575429.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Brachypodium distachyon]
          Length = 684

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 96/204 (47%), Gaps = 4/204 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  ++  LI+    L  VH A  V++ +++  L+P   T  S+++    +++ +   
Sbjct: 452 VLPNLVTFNTLISGYSKLGNVHNAKAVLKMLMEHGLIPDIITFTSLINGLCHTHQLDDAF 511

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
             +  +    ++PN+ T+  ++         + A  LL+ +K+  + P A  +NA +  +
Sbjct: 512 DCFNEMAEWGVRPNAHTYNVLMHALCSAGHVNKAIDLLNKMKKDGITPDAYSFNAPILSF 571

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQL----KSAGGQIT 182
            R K V  A  +   M +  V PD+ T++ LI    +E  I +  E L     S     T
Sbjct: 572 CRMKKVDKARNIFNAMLRLGVVPDNYTYNSLIKALCDERRIDEAKEILLLMESSGSSATT 631

Query: 183 KYVFMALINAYTTCGEFEKARQVV 206
            +  + +++A T  G+F KA Q++
Sbjct: 632 HHTHLPIVSALTKTGQFSKAGQLM 655



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 103/229 (44%), Gaps = 5/229 (2%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           SY  +I        V  A +++++M +  ++P+  T N+++    +    +  + +  M+
Sbjct: 423 SYNMVIDCFVKAGAVDKAAEIIKEMREKGVLPNLVTFNTLISGYSKLGNVHNAKAVLKML 482

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
             H L P+  TF S+I+        D A+   +++ E  + P A  YN +M        V
Sbjct: 483 MEHGLIPDIITFTSLINGLCHTHQLDDAFDCFNEMAEWGVRPNAHTYNVLMHALCSAGHV 542

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMAL 189
             A+ +L +M++  + PD+ +F+  I +    + + K    +  +   G     Y + +L
Sbjct: 543 NKAIDLLNKMKKDGITPDAYSFNAPILSFCRMKKVDKARNIFNAMLRLGVVPDNYTYNSL 602

Query: 190 INAYTTCGEFEKARQVVLDAEIPVKSRSEVKSAL--VSALASHGRTSDA 236
           I A       ++A++++L  E    S +   + L  VSAL   G+ S A
Sbjct: 603 IKALCDERRIDEAKEILLLMESSGSSATTHHTHLPIVSALTKTGQFSKA 651



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 61/130 (46%), Gaps = 3/130 (2%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
            L+P++  + ++I  +V+    D+AY     +      P    YN ++ G  ++  +  A
Sbjct: 171 GLRPSTAVYNALIVASVRAGAVDTAYLRFQQMPADGCQPDCFTYNTLVHGVCQRGIIDEA 230

Query: 136 LMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINA 192
           L ++++ME A ++P+  T++ L+    N    ED +  ++ +K  G    +  +  L++ 
Sbjct: 231 LRLVRQMEGAGIRPNVFTYTMLVDGFCNAGRPEDAVHVFDTMKEKGVSPNEASYRTLVHG 290

Query: 193 YTTCGEFEKA 202
              C    KA
Sbjct: 291 AFRCLGRHKA 300



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/200 (20%), Positives = 81/200 (40%), Gaps = 3/200 (1%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L + PS+A Y  LI  S     V  A    +QM      P   T N+++H   +    +
Sbjct: 169 RLGLRPSTAVYNALIVASVRAGAVDTAYLRFQQMPADGCQPDCFTYNTLVHGVCQRGIID 228

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              R+   +    ++PN  T+  ++         + A  + D +KE  + P  + Y  ++
Sbjct: 229 EALRLVRQMEGAGIRPNVFTYTMLVDGFCNAGRPEDAVHVFDTMKEKGVSPNEASYRTLV 288

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQ 180
            G FR      A ++L E       P    +  +++  S  E   ++++  +++ S G  
Sbjct: 289 HGAFRCLGRHKAYVMLTEWLGREPPPHHSAWQCMLYCLSKNEMAKEVVEVTKKMNSRGYL 348

Query: 181 ITKYVFMALINAYTTCGEFE 200
           +   +F  +++    C E  
Sbjct: 349 LDNAIFGIVVSCAVKCLELS 368



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/250 (19%), Positives = 110/250 (44%), Gaps = 7/250 (2%)

Query: 34  VEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVK 93
           +++MV   L+    + N ++    ++   +    I   +    + PN  TF ++IS   K
Sbjct: 409 LKRMVLDGLLSGVTSYNMVIDCFVKAGAVDKAAEIIKEMREKGVLPNLVTFNTLISGYSK 468

Query: 94  IKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQT 153
           + +  +A ++L  L E  L+P    + +++ G      +  A     EM +  V+P++ T
Sbjct: 469 LGNVHNAKAVLKMLMEHGLIPDIITFTSLINGLCHTHQLDDAFDCFNEMAEWGVRPNAHT 528

Query: 154 FSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA- 209
           ++ L+H   +  +    I    ++K  G     Y F A I ++    + +KAR  + +A 
Sbjct: 529 YNVLMHALCSAGHVNKAIDLLNKMKKDGITPDAYSFNAPILSFCRMKKVDKARN-IFNAM 587

Query: 210 -EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV-IALIEHLNSEGE 267
             + V   +   ++L+ AL    R  +A  +   ++ +G +       + ++  L   G+
Sbjct: 588 LRLGVVPDNYTYNSLIKALCDERRIDEAKEILLLMESSGSSATTHHTHLPIVSALTKTGQ 647

Query: 268 LNRLIQLLEE 277
            ++  QL+ +
Sbjct: 648 FSKAGQLMNK 657



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/127 (20%), Positives = 59/127 (46%), Gaps = 3/127 (2%)

Query: 82  ETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKE 141
           E  R++I+   ++     A+ +   +  + L P+ ++YNA++    R   V  A +  ++
Sbjct: 142 ELLRALIASWGRLGLAQYAHEVFVQMPRLGLRPSTAVYNALIVASVRAGAVDTAYLRFQQ 201

Query: 142 MEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGE 198
           M     +PD  T++ L+H        ++ ++   Q++ AG +   + +  L++ +   G 
Sbjct: 202 MPADGCQPDCFTYNTLVHGVCQRGIIDEALRLVRQMEGAGIRPNVFTYTMLVDGFCNAGR 261

Query: 199 FEKARQV 205
            E A  V
Sbjct: 262 PEDAVHV 268



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 59/283 (20%), Positives = 108/283 (38%), Gaps = 45/283 (15%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           ++P+ ASY+ L+  +   L  H A  ++ + +  E  P       +L+   ++     V 
Sbjct: 277 VSPNEASYRTLVHGAFRCLGRHKAYVMLTEWLGREPPPHHSAWQCMLYCLSKNEMAKEVV 336

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDD-------------------- 106
            +   +       ++  F  ++S  VK  +      LLDD                    
Sbjct: 337 EVTKKMNSRGYLLDNAIFGIVVSCAVKCLELSDLCGLLDDFVKKGGNPGFDVYIMVIKSL 396

Query: 107 ------------LKEM---NLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151
                       LK M    L+   + YN ++  + +   V  A  ++KEM +  V P+ 
Sbjct: 397 LGCKSSSKANHYLKRMVLDGLLSGVTSYNMVIDCFVKAGAVDKAAEIIKEMREKGVLPNL 456

Query: 152 QTFSYLIH------NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
            TF+ LI       N  N + ++K   +       IT   F +LIN      + + A   
Sbjct: 457 VTFNTLISGYSKLGNVHNAKAVLKMLMEHGLIPDIIT---FTSLINGLCHTHQLDDAFDC 513

Query: 206 VLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
             + AE  V+  +   + L+ AL S G  + AI +  ++K+ G
Sbjct: 514 FNEMAEWGVRPNAHTYNVLMHALCSAGHVNKAIDLLNKMKKDG 556


>gi|242067062|ref|XP_002454820.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
 gi|241934651|gb|EES07796.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
          Length = 600

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 92/457 (20%), Positives = 180/457 (39%), Gaps = 31/457 (6%)

Query: 28  HVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSM 87
           H AL V +QM    L P      ++L A   +      RR++  +    L  ++  + +M
Sbjct: 131 HDALRVFDQMRARGLAPDAHACTALLTALARARMTATARRVFDEMARAGLAVSTHVYNAM 190

Query: 88  ISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANV 147
           + + +K  D   A +L+  +    +      YN ++A Y +K     A+ V   M++  +
Sbjct: 191 LHVCLKAGDAARAEALVTRMDAAGVPLDRFSYNTVIALYCKKGMRYEAMCVRDRMDKEGI 250

Query: 148 KPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204
           + D+ T++ LIH        ++  + + ++ +A        +  LI+ Y   G  E+A  
Sbjct: 251 RADTVTWNSLIHGLCKYGRVKEAAQLFTEMAAAQATPDNVTYTTLIDGYCRAGNIEEA-- 308

Query: 205 VVLDAEIPVKS---RSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEH 261
           V L  E+            +A++  L   G+  +   +  E+ E     +      LI  
Sbjct: 309 VKLRGEMEATGMLPGVATYNAILRKLCEDGKMKEVNQLLNEMDERKVQADHVTCNTLINA 368

Query: 262 LNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQLSSATDLLKQLKDKFKDDE 319
               G +    ++ +++ +    ++      LI    + K+L  A +   Q+ D      
Sbjct: 369 YCKRGHMTSACKVKKKMMESGLQLNQFTYKALIHGFCKAKELDEAKEAFFQMVDAGFSPN 428

Query: 320 MAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDEL---GLPPSRKCLDFLLGACVNARD 376
            ++     + FC+         +   D +  I DEL   GLPP +     L+        
Sbjct: 429 YSVFSWLVDGFCK---------KNNADAVLLIPDELMKRGLPPDKAVYRSLIRRLCRKGL 479

Query: 377 LKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQAC 436
           + +A  ++ + ++ GL  + L Y  +   +L  G   +AS  L  M K+  ++   I  C
Sbjct: 480 VDQAQKVFDQMQSKGLVGDSLVYATLAYTYLTEGKPVAASNTLDGMAKNQLYITPQIYNC 539

Query: 437 --------KQTYTIPSLQK-ERGFEKDRDTLLLHKER 464
                   K+T  I  ++  ERG  K     L+H+ R
Sbjct: 540 LCTSYADEKETLNILWVRAIERGLIKKSVYKLMHQAR 576



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 89/206 (43%), Gaps = 3/206 (1%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           A  + TP + +Y  LI   C    +  A+ +  +M    ++P   T N+IL    E  + 
Sbjct: 281 AAAQATPDNVTYTTLIDGYCRAGNIEEAVKLRGEMEATGMLPGVATYNAILRKLCEDGKM 340

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
             V ++   +    ++ +  T  ++I+   K     SA  +   + E  L      Y A+
Sbjct: 341 KEVNQLLNEMDERKVQADHVTCNTLINAYCKRGHMTSACKVKKKMMESGLQLNQFTYKAL 400

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-C--SNEEDIIKYYEQLKSAGG 179
           + G+ + K++  A     +M  A   P+   FS+L+   C  +N + ++   ++L   G 
Sbjct: 401 IHGFCKAKELDEAKEAFFQMVDAGFSPNYSVFSWLVDGFCKKNNADAVLLIPDELMKRGL 460

Query: 180 QITKYVFMALINAYTTCGEFEKARQV 205
              K V+ +LI      G  ++A++V
Sbjct: 461 PPDKAVYRSLIRRLCRKGLVDQAQKV 486



 Score = 38.5 bits (88), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 29/144 (20%), Positives = 62/144 (43%)

Query: 17  LITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHN 76
           LI   C    +  A  V ++M++  L  +  T  +++H   ++ E +  +  +  +    
Sbjct: 365 LINAYCKRGHMTSACKVKKKMMESGLQLNQFTYKALIHGFCKAKELDEAKEAFFQMVDAG 424

Query: 77  LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGAL 136
             PN   F  ++    K  + D+   + D+L +  L P  ++Y +++    RK  V  A 
Sbjct: 425 FSPNYSVFSWLVDGFCKKNNADAVLLIPDELMKRGLPPDKAVYRSLIRRLCRKGLVDQAQ 484

Query: 137 MVLKEMEQANVKPDSQTFSYLIHN 160
            V  +M+   +  DS  ++ L + 
Sbjct: 485 KVFDQMQSKGLVGDSLVYATLAYT 508


>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 88/392 (22%), Positives = 161/392 (41%), Gaps = 56/392 (14%)

Query: 84  FRSMISLNVKIK---------------DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           FR M++L+V++                D +    L+D++    +      YNA + GYF+
Sbjct: 213 FRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFK 272

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLKSAGGQITKYV 185
           + D+ G   +L  ME+  V  +  T++ LIH  SN    E+  + +E+++  G +   YV
Sbjct: 273 RLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYV 332

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKS---RSEVKSALVSALASHGRTSDAIIVYEE 242
           + ++I+     G  ++A  +VL  E+  K     +    AL+  +   G+   A ++  E
Sbjct: 333 YTSIISCNCRSGNVKRA--LVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNE 390

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQL--------LE-EVHDPDYWMDGCCRL-- 291
           ++  G +L P     LI+     G ++  ++L        LE +V   +    G C+L  
Sbjct: 391 MQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNR 450

Query: 292 ------ILHCVRFKQLSSATDLLKQLKDKFKDD-----------EMAMEYHFSEIFCQIA 334
                 +L  +  + +S  T     L D +  +           EM  + +   I     
Sbjct: 451 KDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNV 510

Query: 335 TTDPPDVQIGLDLLQFIKDEL---GLPPS-RKCLDFLLGACVNARDLKRAHLIWKEYENA 390
             D    +  +     +KDEL   GL P    C   + G C++ + +  A  ++ E    
Sbjct: 511 LIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGK-VDMALKLFDEMPQR 569

Query: 391 GLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           GL  NV++Y  M       G  + A KL  +M
Sbjct: 570 GLVPNVVTYTAMISGLSKDGRSEEAFKLYDEM 601



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 123/265 (46%), Gaps = 10/265 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETI-NSILHACEESYEFNLV 65
           + PS+ +Y  LI   C   ++  A  +V +M QG+ +     I N+++    ES   +  
Sbjct: 361 LIPSAHTYGALIHGVCKAGQMEAAQMLVNEM-QGKGIDLNPVIFNTLIDGYCESGMVDEA 419

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            R+  ++    L+ +   + S+ S   K+   D A  LL  + E  + P    +  ++  
Sbjct: 420 LRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDI 479

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS---NEEDIIKYYEQLKSAGGQIT 182
           Y ++ +   A  V +EME+    P+  T++ LI   S   N ++  K  ++L++ G    
Sbjct: 480 YCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPD 539

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKS---RSEVKSALVSALASHGRTSDAIIV 239
            Y   +LI+     G+ + A +  L  E+P +         +A++S L+  GR+ +A  +
Sbjct: 540 VYTCTSLIHGECIDGKVDMALK--LFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKL 597

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNS 264
           Y+E+KE G   +     +L+  L+S
Sbjct: 598 YDEMKETGLTPDDTVYSSLVGSLHS 622



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 68/159 (42%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           ++P++ S+  LI   C       A  V  +M +   VP+  T N ++    +        
Sbjct: 466 VSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAH 525

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           ++   + +  L P+  T  S+I         D A  L D++ +  L+P    Y A+++G 
Sbjct: 526 KLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGL 585

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE 165
            +    + A  +  EM++  + PD   +S L+ +  + E
Sbjct: 586 SKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSLHSAE 624



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 45/253 (17%), Positives = 108/253 (42%), Gaps = 10/253 (3%)

Query: 48  TINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL 107
           T   ++H      +    +R++  +    ++ +   + S+IS N +  +   A  L D++
Sbjct: 297 TYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEM 356

Query: 108 KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE-- 164
            +  L+P+A  Y A++ G  +   ++ A M++ EM+   +  +   F+ LI   C +   
Sbjct: 357 TDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMV 416

Query: 165 EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSAL 223
           ++ ++    ++  G +   + + ++ +        ++A+ ++    E  V   +   + L
Sbjct: 417 DEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTL 476

Query: 224 VSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD--- 280
           +      G   +A  V+ E++E G          LI+  +  G +    +L +E+ +   
Sbjct: 477 IDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGL 536

Query: 281 -PDYWMDGCCRLI 292
            PD +   C  LI
Sbjct: 537 IPDVYT--CTSLI 547


>gi|452823354|gb|EME30365.1| mitochondrial protein translocase, MPT family [Galdieria
           sulphuraria]
          Length = 683

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 127/281 (45%), Gaps = 16/281 (5%)

Query: 10  SSASYKKLITYSCDLLK---VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           S   Y  ++   C +LK   + +   ++++M Q +++P + +  ++L  C E  + +  R
Sbjct: 301 SRTVYYNILLKGCKMLKESALEMGWSILDKMSQDQILPDSISFVTMLEVCNEVKDIDSAR 360

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKD-FDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            +   + +   K + E   + +S+  K+K   + ++ LL   KE  + P    YN ++  
Sbjct: 361 MMVRSMMNSKKKISIEAINTGLSVFCKMKTAIEESFQLLKWAKENGIEPDTISYNILLDH 420

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYV 185
            FR +D +    + KE++   +KPD+ T++YLI   SN       Y ++ +   ++ K  
Sbjct: 421 AFRLRDWERGEKIFKELQTQGLKPDATTYNYLIRAYSNSNQ----YAKVVATFKEMNKRN 476

Query: 186 FM-------ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS-ALVSALASHGRTSDAI 237
           F+       +L+  +   G    A QV+   E     R++    A V A  S GR  DA+
Sbjct: 477 FIPNEQSCSSLVRVFHIQGNDAAALQVLNLMERHYSPRNDPSILAFVRAYISMGRLQDAL 536

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            +   +      L    V  L++   S G+L  +  LL+E+
Sbjct: 537 GMKRMLSRKTGRLWKTIVTILMDAFASIGDLRVVEDLLDEM 577


>gi|302829725|ref|XP_002946429.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
 gi|300268175|gb|EFJ52356.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
          Length = 961

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/271 (20%), Positives = 123/271 (45%), Gaps = 4/271 (1%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  +I+      ++  AL++V +M    +  +  T +++++ C ++ E +L + +Y  +
Sbjct: 278 TYTTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQM 337

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
                 PN  T+  +I + VK   ++ A  +LD L++  +      YN +++   +    
Sbjct: 338 LEEGCSPNLVTYNILIDVYVKRCQWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQP 397

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMAL 189
           + AL V ++M  A VKP + T++ LI     +   E  ++ +  +   G +     + +L
Sbjct: 398 EQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALEIFRDMIRRGCERNVITYSSL 457

Query: 190 INAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC 248
           I+A    G +E A ++         K      ++L++A +  G    A  ++E+++  GC
Sbjct: 458 ISACEKAGRWEMALELFSKMHKENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQTQGC 517

Query: 249 NLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279
             +      LI      G+  R ++  E++ 
Sbjct: 518 KPDSITYCGLITAYERGGQWRRALKAFEQMQ 548



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 95/202 (47%), Gaps = 11/202 (5%)

Query: 8   TPSSASYKKLI---TYSCDLLKVHVALDVVE-QMVQGELVPSTETINSILHACEESYEFN 63
           +P+  +Y  LI      C   +    LD +E Q +Q E+     T N+++ AC +S +  
Sbjct: 343 SPNLVTYNILIDVYVKRCQWEEAVKVLDTLEKQAIQAEV----RTYNTVISACNKSGQPE 398

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              ++Y  +    +KP++ T+ ++IS   K    + A  +  D+           Y++++
Sbjct: 399 QALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALEIFRDMIRRGCERNVITYSSLI 458

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQ 180
           +   +    + AL +  +M + N KP+  TF+ LI  CS+    E   + +EQ+++ G +
Sbjct: 459 SACEKAGRWEMALELFSKMHKENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQTQGCK 518

Query: 181 ITKYVFMALINAYTTCGEFEKA 202
                +  LI AY   G++ +A
Sbjct: 519 PDSITYCGLITAYERGGQWRRA 540



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 72/152 (47%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + PS+ +Y  LI+      +V  AL++   M++     +  T +S++ ACE++  + +  
Sbjct: 412 VKPSATTYTALISAYGKKGQVEKALEIFRDMIRRGCERNVITYSSLISACEKAGRWEMAL 471

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +   N KPN  TF S+I+       ++ A  L + ++     P +  Y  ++  Y
Sbjct: 472 ELFSKMHKENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAY 531

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            R    + AL   ++M+     PD+  F+ L+
Sbjct: 532 ERGGQWRRALKAFEQMQTQGCHPDAAVFNSLM 563



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/278 (16%), Positives = 106/278 (38%), Gaps = 51/278 (18%)

Query: 48  TINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL 107
           T  +++  C    +      +   +    +  N  T+ +++++ +K  + D A  +   +
Sbjct: 278 TYTTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQM 337

Query: 108 KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE--- 164
            E    P    YN ++  Y ++   + A+ VL  +E+  ++ + +T++ +I  C+     
Sbjct: 338 LEEGCSPNLVTYNILIDVYVKRCQWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQP 397

Query: 165 EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALV 224
           E  +K YE++ +AG                                  VK  +   +AL+
Sbjct: 398 EQALKVYEKMLAAG----------------------------------VKPSATTYTALI 423

Query: 225 SALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW 284
           SA    G+   A+ ++ ++   GC        +LI      G     ++L  ++H  +  
Sbjct: 424 SAYGKKGQVEKALEIFRDMIRRGCERNVITYSSLISACEKAGRWEMALELFSKMHKEN-- 481

Query: 285 MDGCCR--------LILHCVRFKQLSSATDLLKQLKDK 314
               C+        LI  C        A++L +Q++ +
Sbjct: 482 ----CKPNVVTFNSLIAACSHGGHWEKASELFEQMQTQ 515


>gi|302819015|ref|XP_002991179.1| hypothetical protein SELMODRAFT_448320 [Selaginella moellendorffii]
 gi|300141007|gb|EFJ07723.1| hypothetical protein SELMODRAFT_448320 [Selaginella moellendorffii]
          Length = 561

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 110/234 (47%), Gaps = 41/234 (17%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P +  Y  +I       KV  A+ V + M +  +  +  T NS+L AC+++++     
Sbjct: 258 VKPDARMYNLMIHTYGKQGKVEQAMSVYQSMKRERVALTIVTFNSLL-ACQKTWKD--AE 314

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +    L P+  ++ ++++   K +  + A++  DD+    + PT   YNA++  Y
Sbjct: 315 DVFRKLQAAKLDPDVFSYTALVNAYAKARRAECAHAAFDDMIAAGIRPTQVAYNALINAY 374

Query: 127 FRKKDVQGALMVLKEMEQ-----------------------------------ANVKPDS 151
            + KD +GA  VLK+M+Q                                   A+++P+ 
Sbjct: 375 AKCKDPEGARAVLKQMKQNGCTPTVESYTSLISAYVSVNLMAKAEQTVLRMKEADLQPNL 434

Query: 152 QTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
           QTF  L+   +N    +++++ +E +K AG +  ++V+  L+NAY +  +F+ A
Sbjct: 435 QTFCILMTGYANGNKLDNMMRSFETMKLAGLEPNRHVYTVLVNAYGSNDDFDSA 488



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/179 (20%), Positives = 77/179 (43%), Gaps = 5/179 (2%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           AKL+  P   SY  L+       +   A    + M+   + P+    N++++A  +  + 
Sbjct: 323 AKLD--PDVFSYTALVNAYAKARRAECAHAAFDDMIAAGIRPTQVAYNALINAYAKCKDP 380

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
              R +   +  +   P  E++ S+IS  V +     A   +  +KE +L P    +  +
Sbjct: 381 EGARAVLKQMKQNGCTPTVESYTSLISAYVSVNLMAKAEQTVLRMKEADLQPNLQTFCIL 440

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAG 178
           M GY     +   +   + M+ A ++P+   ++ L++   + +D    I +Y+Q+   G
Sbjct: 441 MTGYANGNKLDNMMRSFETMKLAGLEPNRHVYTVLVNAYGSNDDFDSAIIWYKQMLGTG 499



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 89/202 (44%), Gaps = 4/202 (1%)

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMI---SLNVKIKDFDSAYSLLDDLKEMNLMPTASM 118
           F+    ++  +      P ++T+++M+   S   ++ D    + L+ D     + P A M
Sbjct: 205 FDKAEAVFQRLLTTGPSPTAQTYQTMMKSYSEAGRLDDVQRIFKLVTDSPSPTVKPDARM 264

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAG 178
           YN ++  Y ++  V+ A+ V + M++  V     TF+ L+      +D    + +L++A 
Sbjct: 265 YNLMIHTYGKQGKVEQAMSVYQSMKRERVALTIVTFNSLLACQKTWKDAEDVFRKLQAAK 324

Query: 179 GQITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAI 237
                + + AL+NAY      E A     D     ++      +AL++A A       A 
Sbjct: 325 LDPDVFSYTALVNAYAKARRAECAHAAFDDMIAAGIRPTQVAYNALINAYAKCKDPEGAR 384

Query: 238 IVYEEIKEAGCNLEPRAVIALI 259
            V +++K+ GC     +  +LI
Sbjct: 385 AVLKQMKQNGCTPTVESYTSLI 406



 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 82/202 (40%), Gaps = 16/202 (7%)

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY- 126
           I+  +    +  N E +   I    + + FD A ++   L      PTA  Y  +M  Y 
Sbjct: 176 IFQRMAELGVAANIEMYTLQIEGYGRRRSFDKAEAVFQRLLTTGPSPTAQTYQTMMKSYS 235

Query: 127 --FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQI 181
              R  DVQ    ++ +     VKPD++ ++ +IH    +   E  +  Y+ +K     +
Sbjct: 236 EAGRLDDVQRIFKLVTDSPSPTVKPDARMYNLMIHTYGKQGKVEQAMSVYQSMKRERVAL 295

Query: 182 TKYVFMALINAYTTCGE----FEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAI 237
           T   F +L+    T  +    F K +   LD ++         +ALV+A A   R   A 
Sbjct: 296 TIVTFNSLLACQKTWKDAEDVFRKLQAAKLDPDV------FSYTALVNAYAKARRAECAH 349

Query: 238 IVYEEIKEAGCNLEPRAVIALI 259
             ++++  AG      A  ALI
Sbjct: 350 AAFDDMIAAGIRPTQVAYNALI 371


>gi|225445222|ref|XP_002280919.1| PREDICTED: pentatricopeptide repeat-containing protein At5g21222
           [Vitis vinifera]
 gi|297738818|emb|CBI28063.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 112/251 (44%), Gaps = 4/251 (1%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M  +  + P+  ++  LI   C+  ++  A +VV +M    L P   T N++  A  ++ 
Sbjct: 202 MSQEENVKPNDRTFNSLIRAWCNKKRITEAWNVVYKMAASGLQPDVVTYNTLARAYAQNG 261

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           E +    +   + ++ + PN  T   +I+   K      A   L  ++   + P   ++N
Sbjct: 262 ETSRAEGMILEMQNNRVMPNERTCGIIINGYCKEGKMKDALRFLYRMRNYGVHPNLVIFN 321

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSA 177
           +++ G+    D  G    L  ME+  VKPD  TFS +++  S+   + K    ++ +  A
Sbjct: 322 SLIKGFLDITDTDGVDEALTLMEEFGVKPDVVTFSTIMNAWSSVGLMDKCQEIFDDMVKA 381

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDA 236
           G +   + F  L   Y   GE EKA  ++    +  V+    + + ++S   S G+   A
Sbjct: 382 GIEPDIHAFSILAKGYVRAGEPEKAESLLTAMGKSGVQPNVVIFTTIISGWCSAGKMEYA 441

Query: 237 IIVYEEIKEAG 247
             VYE++ E G
Sbjct: 442 SRVYEKMCEMG 452



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/345 (21%), Positives = 150/345 (43%), Gaps = 27/345 (7%)

Query: 103 LLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS 162
           + + L E    PT   Y  ++A   R+K  +    ++ ++E+  +KPDS  F+ +I+  S
Sbjct: 93  IFNSLTEEGHRPTLITYTTLLAALTRQKRFKSIPSLISKLEKNGLKPDSVFFNAMINAFS 152

Query: 163 ---NEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV--VLDAEIPVKSRS 217
              N ++ +K + ++K  G + T   F  LI  Y   G  E+  ++  ++  E  VK   
Sbjct: 153 ESGNVKEAMKIFRKMKDRGCKPTTSTFNTLIKGYGNAGMPEECLKLLDLMSQEENVKPND 212

Query: 218 EVKSALVSALASHGRTSDAI-IVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQL 274
              ++L+ A  +  R ++A  +VY   K A   L+P  V    L       GE +R   +
Sbjct: 213 RTFNSLIRAWCNKKRITEAWNVVY---KMAASGLQPDVVTYNTLARAYAQNGETSRAEGM 269

Query: 275 LEEVHD----PDYWMDGCCRLIL--HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSE 328
           + E+ +    P+   +  C +I+  +C   K +  A   L ++++      + +     +
Sbjct: 270 ILEMQNNRVMPN---ERTCGIIINGYCKEGK-MKDALRFLYRMRNYGVHPNLVIFNSLIK 325

Query: 329 IFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYE 388
            F  I  TD      G+D    + +E G+ P       ++ A  +   + +   I+ +  
Sbjct: 326 GFLDITDTD------GVDEALTLMEEFGVKPDVVTFSTIMNAWSSVGLMDKCQEIFDDMV 379

Query: 389 NAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVI 433
            AG+  ++ ++  + K ++ +G  + A  LL+ M K       VI
Sbjct: 380 KAGIEPDIHAFSILAKGYVRAGEPEKAESLLTAMGKSGVQPNVVI 424



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 83/388 (21%), Positives = 157/388 (40%), Gaps = 52/388 (13%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P+  T  ++L A      F  +  +   +  + LKP+S  F +MI+   +  +   A  +
Sbjct: 104 PTLITYTTLLAALTRQKRFKSIPSLISKLEKNGLKPDSVFFNAMINAFSESGNVKEAMKI 163

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQ-ANVKPDSQTFSYLIHNCS 162
              +K+    PT S +N ++ GY      +  L +L  M Q  NVKP+ +TF+ LI    
Sbjct: 164 FRKMKDRGCKPTTSTFNTLIKGYGNAGMPEECLKLLDLMSQEENVKPNDRTFNSLIRAWC 223

Query: 163 NEEDIIKYYE---QLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIP-VKSRSE 218
           N++ I + +    ++ ++G Q     +  L  AY   GE  +A  ++L+ +   V     
Sbjct: 224 NKKRITEAWNVVYKMAASGLQPDVVTYNTLARAYAQNGETSRAEGMILEMQNNRVMPNER 283

Query: 219 VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
               +++     G+  DA+     ++  G  + P  VI            N LI+   ++
Sbjct: 284 TCGIIINGYCKEGKMKDALRFLYRMRNYG--VHPNLVI-----------FNSLIKGFLDI 330

Query: 279 HDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDP 338
            D D                  +  A  L+++     K D +     FS I    ++   
Sbjct: 331 TDTD-----------------GVDEALTLMEEF--GVKPDVVT----FSTIMNAWSS--- 364

Query: 339 PDVQIGL-DLLQFIKDEL---GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPY 394
               +GL D  Q I D++   G+ P       L    V A + ++A  +      +G+  
Sbjct: 365 ----VGLMDKCQEIFDDMVKAGIEPDIHAFSILAKGYVRAGEPEKAESLLTAMGKSGVQP 420

Query: 395 NVLSYLWMYKAFLASGNRKSASKLLSKM 422
           NV+ +  +   + ++G  + AS++  KM
Sbjct: 421 NVVIFTTIISGWCSAGKMEYASRVYEKM 448



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 112/258 (43%), Gaps = 10/258 (3%)

Query: 3   AKLE---ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEE 58
           +KLE   + P S  +  +I    +   V  A+ +  +M      P+T T N+++      
Sbjct: 130 SKLEKNGLKPDSVFFNAMINAFSESGNVKEAMKIFRKMKDRGCKPTTSTFNTLIKGYGNA 189

Query: 59  SYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM 118
                 ++ +  M    N+KPN  TF S+I      K    A++++  +    L P    
Sbjct: 190 GMPEECLKLLDLMSQEENVKPNDRTFNSLIRAWCNKKRITEAWNVVYKMAASGLQPDVVT 249

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLK 175
           YN +   Y +  +   A  ++ EM+   V P+ +T   +I+    E   +D +++  +++
Sbjct: 250 YNTLARAYAQNGETSRAEGMILEMQNNRVMPNERTCGIIINGYCKEGKMKDALRFLYRMR 309

Query: 176 SAGGQITKYVFMALINAYTTCGEFEKARQ-VVLDAEIPVKSRSEVKSALVSALASHGRTS 234
           + G      +F +LI  +    + +   + + L  E  VK      S +++A +S G   
Sbjct: 310 NYGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEFGVKPDVVTFSTIMNAWSSVGLMD 369

Query: 235 DAIIVYEEIKEAGCNLEP 252
               +++++ +AG  +EP
Sbjct: 370 KCQEIFDDMVKAG--IEP 385


>gi|42573413|ref|NP_974803.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122214363|sp|Q3E9F0.1|PP392_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g18475
 gi|110737103|dbj|BAF00503.1| hypothetical protein [Arabidopsis thaliana]
 gi|332005185|gb|AED92568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 506

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 127/284 (44%), Gaps = 11/284 (3%)

Query: 6   EITPSSASYKKLITYSC--DLLKVHV----ALDVVEQMVQGE-LVPSTETINSILHACEE 58
           E+  S  SY   ITYS   D L  H     A+++ E M+  E + P   T N +++    
Sbjct: 221 EMKRSGISYPNSITYSTLMDCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMINGFCR 280

Query: 59  SYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM 118
           + E    ++I   +  +   PN   + ++++   K+     A    D++K+  L      
Sbjct: 281 AGEVERAKKILDFMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLDTVG 340

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLK 175
           Y  +M  + R  +   A+ +L EM+ +  + D+ T++ ++   S+E   E+ ++  +Q  
Sbjct: 341 YTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEGRSEEALQMLDQWG 400

Query: 176 SAGGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTS 234
           S G  + K  +  ++NA    GE EKA + + + +E  +       + LV  L   G T 
Sbjct: 401 SEGVHLNKGSYRIILNALCCNGELEKAVKFLSVMSERGIWPHHATWNELVVRLCESGYTE 460

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
             + V       G    P++  A++E +  E +L  + +LL+ +
Sbjct: 461 IGVRVLIGFLRIGLIPGPKSWGAVVESICKERKLVHVFELLDSL 504



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/283 (19%), Positives = 117/283 (41%), Gaps = 35/283 (12%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHAC--EESYEF 62
           L + P++  +  L+ + C    ++ A  VVE+M +  +        S L  C    S   
Sbjct: 190 LGLQPNTCIFNILVKHHCKNGDINFAFLVVEEMKRSGISYPNSITYSTLMDCLFAHSRSK 249

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
             V     MI    + P+  TF  MI+   +  + + A  +LD +K+    P    Y+A+
Sbjct: 250 EAVELFEDMISKEGISPDPVTFNVMINGFCRAGEVERAKKILDFMKKNGCNPNVYNYSAL 309

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQIT 182
           M G+ +   +Q A                QTF                 +++K  G ++ 
Sbjct: 310 MNGFCKVGKIQEA---------------KQTF-----------------DEVKKTGLKLD 337

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYE 241
              +  L+N +   GE ++A +++ + +    ++ +   + ++  L+S GR+ +A+ + +
Sbjct: 338 TVGYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEGRSEEALQMLD 397

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW 284
           +    G +L   +   ++  L   GEL + ++ L  + +   W
Sbjct: 398 QWGSEGVHLNKGSYRIILNALCCNGELEKAVKFLSVMSERGIW 440



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 110/226 (48%), Gaps = 17/226 (7%)

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLK-EMNLMPTASMYN 120
           FNL++ I        +KP+     + ++L +   + + +  LL   K  + L P   ++N
Sbjct: 147 FNLIQVIA------RVKPSLNAISTCLNLLIDSGEVNLSRKLLLYAKHNLGLQPNTCIFN 200

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVK-PDSQTFSYLIHNC----SNEEDIIKYYEQLK 175
            ++  + +  D+  A +V++EM+++ +  P+S T+S L+ +C    S  ++ ++ +E + 
Sbjct: 201 ILVKHHCKNGDINFAFLVVEEMKRSGISYPNSITYSTLM-DCLFAHSRSKEAVELFEDMI 259

Query: 176 SAGGQITKYV-FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEV--KSALVSALASHGR 232
           S  G     V F  +IN +   GE E+A++ +LD          V   SAL++     G+
Sbjct: 260 SKEGISPDPVTFNVMINGFCRAGEVERAKK-ILDFMKKNGCNPNVYNYSALMNGFCKVGK 318

Query: 233 TSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
             +A   ++E+K+ G  L+      L+      GE +  ++LL E+
Sbjct: 319 IQEAKQTFDEVKKTGLKLDTVGYTTLMNCFCRNGETDEAMKLLGEM 364


>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 88/392 (22%), Positives = 161/392 (41%), Gaps = 56/392 (14%)

Query: 84  FRSMISLNVKIK---------------DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           FR M++L+V++                D +    L+D++    +      YNA + GYF+
Sbjct: 217 FRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFK 276

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLKSAGGQITKYV 185
           + D+ G   +L  ME+  V  +  T++ LIH  SN    E+  + +E+++  G +   YV
Sbjct: 277 RLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYV 336

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKS---RSEVKSALVSALASHGRTSDAIIVYEE 242
           + ++I+     G  ++A  +VL  E+  K     +    AL+  +   G+   A ++  E
Sbjct: 337 YTSIISCNCRSGNVKRA--LVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNE 394

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQL--------LE-EVHDPDYWMDGCCRL-- 291
           ++  G +L P     LI+     G ++  ++L        LE +V   +    G C+L  
Sbjct: 395 MQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNR 454

Query: 292 ------ILHCVRFKQLSSATDLLKQLKDKFKDD-----------EMAMEYHFSEIFCQIA 334
                 +L  +  + +S  T     L D +  +           EM  + +   I     
Sbjct: 455 KDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNV 514

Query: 335 TTDPPDVQIGLDLLQFIKDEL---GLPPS-RKCLDFLLGACVNARDLKRAHLIWKEYENA 390
             D    +  +     +KDEL   GL P    C   + G C++ + +  A  ++ E    
Sbjct: 515 LIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGK-VDMALKLFDEMPQR 573

Query: 391 GLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           GL  NV++Y  M       G  + A KL  +M
Sbjct: 574 GLVPNVVTYTAMISGLSKDGRSEEAFKLYDEM 605



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 124/268 (46%), Gaps = 10/268 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETI-NSILHACEESYEFNLV 65
           + PS+ +Y  LI   C   ++  A  +V +M QG+ +     I N+++    ES   +  
Sbjct: 365 LIPSAHTYGALIHGVCKAGQMEAAQMLVNEM-QGKGIDLNPVIFNTLIDGYCESGMVDEA 423

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            R+  ++    L+ +   + S+ S   K+   D A  LL  + E  + P    +  ++  
Sbjct: 424 LRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDI 483

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS---NEEDIIKYYEQLKSAGGQIT 182
           Y ++ +   A  V +EME+    P+  T++ LI   S   N ++  K  ++L++ G    
Sbjct: 484 YCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPD 543

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKS---RSEVKSALVSALASHGRTSDAIIV 239
            Y   +LI+     G+ + A +  L  E+P +         +A++S L+  GR+ +A  +
Sbjct: 544 VYTCTSLIHGECIDGKVDMALK--LFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKL 601

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGE 267
           Y+E+KE G   +     +L+  L+S  E
Sbjct: 602 YDEMKETGLTPDDTVYSSLVGSLHSADE 629



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 45/253 (17%), Positives = 108/253 (42%), Gaps = 10/253 (3%)

Query: 48  TINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL 107
           T   ++H      +    +R++  +    ++ +   + S+IS N +  +   A  L D++
Sbjct: 301 TYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEM 360

Query: 108 KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE-- 164
            +  L+P+A  Y A++ G  +   ++ A M++ EM+   +  +   F+ LI   C +   
Sbjct: 361 TDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMV 420

Query: 165 EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSAL 223
           ++ ++    ++  G +   + + ++ +        ++A+ ++    E  V   +   + L
Sbjct: 421 DEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTL 480

Query: 224 VSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD--- 280
           +      G   +A  V+ E++E G          LI+  +  G +    +L +E+ +   
Sbjct: 481 IDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGL 540

Query: 281 -PDYWMDGCCRLI 292
            PD +   C  LI
Sbjct: 541 IPDVYT--CTSLI 551


>gi|422293946|gb|EKU21246.1| hypothetical protein NGA_2092600 [Nannochloropsis gaditana CCMP526]
          Length = 659

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 123/275 (44%), Gaps = 14/275 (5%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL V+ +M    L P   + N+ + A  ++ +++L   ++  I  H   PN  ++ + I 
Sbjct: 245 ALGVLREMQARGLRPDLVSFNTAMDALGKAGQYDLALELFTEIEDHGFAPNLVSYNTAIH 304

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA-NVK 148
              +    D A+ LL +++ +++ P +  YN +MA + +K   + AL +L EM++A  V 
Sbjct: 305 ACGRAGMVDRAHELLREMQGLSVRPDSVSYNTVMAAFAKKNQWKAALELLAEMKEAPGVD 364

Query: 149 PDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK---YVFMALINAYTTCGEFEKARQV 205
           PD  +++  +H C+      +  E L  A GQ  +     +  +++A    GE+ +A  +
Sbjct: 365 PDLISYNTAMHVCAKAGRWERATELLTEALGQGLQPDVVSYNTVMHACGRAGEYLQALDL 424

Query: 206 V-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
             +  E+ V       +  + A     +   A+ +  E++        ++    ++    
Sbjct: 425 FGMMEEVGVAPDRVSFNTAMHACNRALKWQAALQILREMEARSIAPNVKSYTIAVDACGR 484

Query: 265 EGELNRLIQLLEE---------VHDPDYWMDGCCR 290
            GE  R ++L+EE         VH     MD CCR
Sbjct: 485 AGEWERALELMEEMEVRGVPANVHTYTAAMDACCR 519



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/206 (19%), Positives = 94/206 (45%), Gaps = 6/206 (2%)

Query: 33  VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92
           + E + QG L P   + N+++HAC  + E+     ++ M+    + P+  +F + +    
Sbjct: 390 LTEALGQG-LQPDVVSYNTVMHACGRAGEYLQALDLFGMMEEVGVAPDRVSFNTAMHACN 448

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
           +   + +A  +L +++  ++ P    Y   +    R  + + AL +++EME   V  +  
Sbjct: 449 RALKWQAALQILREMEARSIAPNVKSYTIAVDACGRAGEWERALELMEEMEVRGVPANVH 508

Query: 153 TFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA 209
           T++  +  C      + ++   E++   G +     +   ++A    G++++A   VL+ 
Sbjct: 509 TYTAAMDACCRGGAVDRVLVLLEEMDGKGVEPNVVSYTIAMDAMNRVGKWDRA-SAVLEQ 567

Query: 210 EIPVKSRSEVKSALVSALASHGRTSD 235
            +    R +  S   +AL++ GR  D
Sbjct: 568 MVQRGLRLDSVS-YRTALSTAGRAGD 592



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 32/153 (20%), Positives = 72/153 (47%), Gaps = 4/153 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHV-ALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           + P   SY  ++ ++C     ++ ALD+   M +  + P   + N+ +HAC  + ++   
Sbjct: 398 LQPDVVSYNTVM-HACGRAGEYLQALDLFGMMEEVGVAPDRVSFNTAMHACNRALKWQAA 456

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            +I   +   ++ PN +++   +    +  +++ A  L+++++   +      Y A M  
Sbjct: 457 LQILREMEARSIAPNVKSYTIAVDACGRAGEWERALELMEEMEVRGVPANVHTYTAAMDA 516

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
             R   V   L++L+EM+   V+P+    SY I
Sbjct: 517 CCRGGAVDRVLVLLEEMDGKGVEPN--VVSYTI 547


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 164/387 (42%), Gaps = 38/387 (9%)

Query: 51  SILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEM 110
           SIL+AC  S      + I+  I       + +   ++IS+  +  D   A  L   + + 
Sbjct: 335 SILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKR 394

Query: 111 NLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE---DI 167
           +L+     +NAI+AGY R++D   A+ + K+M+   VKP   TF +L+  C+N     D 
Sbjct: 395 DLIS----WNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADG 450

Query: 168 IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSA 226
              +E +  +G +   ++  AL+N Y  CG   +A+ V        ++R  +  +++++ 
Sbjct: 451 KMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEG----TQARDVISWNSMIAG 506

Query: 227 LASHGRTSDAIIVYEEIKEAGCNLEPRAVI---ALIEHLNSEG-ELNRLI--QLLEEVHD 280
            A HG    A  +++E++     LEP  +     L    N E  EL + I  ++ E    
Sbjct: 507 HAQHGSYETAYKLFQEMQNE--ELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQ 564

Query: 281 PDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPD 340
            D  +     LI   +R   L  A ++   L+ +   D M+               D  +
Sbjct: 565 LDVNLGNA--LINMYIRCGSLQDARNVFHSLQHR---DVMSWTAMIG------GCADQGE 613

Query: 341 VQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYL 400
               ++L   +++E   PP       +L AC +A  +   + I+   E+    Y VL  +
Sbjct: 614 DMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMES---EYGVLPTI 670

Query: 401 WMYKAFLASGNR----KSASKLLSKMP 423
             Y   +    R    + A  L+++MP
Sbjct: 671 EHYGCLVGLLGRARRFQEAETLINQMP 697



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/222 (20%), Positives = 104/222 (46%), Gaps = 12/222 (5%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+ + +QM    + P   T   +L AC  S  +   + I+  I    +K N     ++++
Sbjct: 415 AMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMN 474

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  +      A ++ +  +  +++     +N+++AG+ +    + A  + +EM+   ++P
Sbjct: 475 MYRRCGSLMEAQNVFEGTQARDVIS----WNSMIAGHAQHGSYETAYKLFQEMQNEELEP 530

Query: 150 DSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D+ TF+ ++  C N E +    + + ++  +G Q+   +  ALIN Y  CG  + AR V 
Sbjct: 531 DNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVF 590

Query: 207 LDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAG 247
                 ++ R  +  +A++   A  G    AI ++ +++  G
Sbjct: 591 HS----LQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEG 628



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 83/376 (22%), Positives = 153/376 (40%), Gaps = 32/376 (8%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A  + E+M     +P+  T  SIL AC    E    ++I+  I     + +     S++S
Sbjct: 112 AFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLS 171

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K  D   A  +   +   +++     YN ++  Y +K  V+  L +  +M    + P
Sbjct: 172 MYGKCGDLPRARQVFAGISPRDVVS----YNTMLGLYAQKAYVKECLGLFGQMSSEGISP 227

Query: 150 DSQTFSYLIHNCSNEE--DIIKYYEQLKSAGGQITKY-VFMALINAYTTCGEFEKARQV- 205
           D  T+  L+   +     D  K   +L    G  +   V  AL+     CG+ + A+Q  
Sbjct: 228 DKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAF 287

Query: 206 --VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
             + D ++       V +AL++ALA HG   +A   Y  ++  G  L     ++++   +
Sbjct: 288 KGIADRDVV------VYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACS 341

Query: 264 SEG--ELNRLI--QLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDE 319
           +    E  +LI   + E+ H  D  +     LI    R   L  A +L   +    K D 
Sbjct: 342 TSKALEAGKLIHSHISEDGHSSDVQIGNA--LISMYARCGDLPKARELFYTMP---KRDL 396

Query: 320 MAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKR 379
           ++    ++ I    A  +  D    + L + ++ E G+ P R     LL AC N+     
Sbjct: 397 IS----WNAIIAGYARRE--DRGEAMRLYKQMQSE-GVKPGRVTFLHLLSACANSSAYAD 449

Query: 380 AHLIWKEYENAGLPYN 395
             +I ++   +G+  N
Sbjct: 450 GKMIHEDILRSGIKSN 465



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 78/393 (19%), Positives = 153/393 (38%), Gaps = 40/393 (10%)

Query: 48  TINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL 107
           T  ++L  C         +RI+  +    + P+      +I++ VK +    A+ +  ++
Sbjct: 29  TYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKEM 88

Query: 108 KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE--- 164
              +++   S+ +      F+KK    A  + +EM+ A   P+  T+  ++  C +    
Sbjct: 89  PRRDVISWNSLISCYAQQGFKKK----AFQLFEEMQNAGFIPNKITYISILTACYSPAEL 144

Query: 165 EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SAL 223
           E+  K + Q+  AG Q    V  +L++ Y  CG+  +ARQV       +  R  V  + +
Sbjct: 145 ENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAG----ISPRDVVSYNTM 200

Query: 224 VSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN---RLIQL-LEEVH 279
           +   A      + + ++ ++   G + +    I L++   +   L+   R+ +L +EE  
Sbjct: 201 LGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGL 260

Query: 280 DPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDK------FKDDEMAMEYHFSEIFCQI 333
           + D  +     L+  CVR   + SA    K + D+           +A   H  E F Q 
Sbjct: 261 NSDIRVG--TALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQY 318

Query: 334 ATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLP 393
                           +     G+  +R     +L AC  ++ L+   LI       G  
Sbjct: 319 ----------------YRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHS 362

Query: 394 YNVLSYLWMYKAFLASGNRKSASKLLSKMPKDD 426
            +V     +   +   G+   A +L   MPK D
Sbjct: 363 SDVQIGNALISMYARCGDLPKARELFYTMPKRD 395



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 43/225 (19%), Positives = 94/225 (41%), Gaps = 13/225 (5%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +I           A  + ++M   EL P   T  S+L  C+      L ++I+  I
Sbjct: 499 SWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRI 558

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               L+ +     ++I++ ++      A ++   L+  ++M     + A++ G   + + 
Sbjct: 559 TESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMS----WTAMIGGCADQGED 614

Query: 133 QGALMVLKEMEQANVKP-DSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALIN 191
             A+ +  +M+    +P D  TF+ ++  C++   +++ Y+   S     ++Y  +  I 
Sbjct: 615 MKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSS---MESEYGVLPTIE 671

Query: 192 AYTT-CGEFEKARQV----VLDAEIPVKSRSEVKSALVSALASHG 231
            Y    G   +AR+      L  ++P    + V   L+ A   HG
Sbjct: 672 HYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHG 716



 Score = 41.6 bits (96), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 46/246 (18%), Positives = 100/246 (40%), Gaps = 13/246 (5%)

Query: 7   ITPSSA-SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           I+P    SY  ++        V   L +  QM    + P   T  ++L A       +  
Sbjct: 189 ISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEG 248

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           +RI+ +     L  +     +++++ V+  D DSA      + + +++    +YNA++A 
Sbjct: 249 KRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVV----VYNALIAA 304

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQIT 182
             +      A      M    V  +  T+  +++ CS  + +      +  +   G    
Sbjct: 305 LAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSD 364

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYE 241
             +  ALI+ Y  CG+  KAR++       +  R  +  +A+++  A      +A+ +Y+
Sbjct: 365 VQIGNALISMYARCGDLPKARELFY----TMPKRDLISWNAIIAGYARREDRGEAMRLYK 420

Query: 242 EIKEAG 247
           +++  G
Sbjct: 421 QMQSEG 426


>gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
 gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula]
 gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 87/404 (21%), Positives = 166/404 (41%), Gaps = 14/404 (3%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHN-LKPNSETFR 85
           V+ AL +  Q+   +  P+  T NS++    +      V  +Y  +C      P++ T+ 
Sbjct: 176 VNKALSIFYQVKGRKCRPTAGTYNSVILMLMQEGHHEKVHELYNEMCSEGHCFPDTVTYS 235

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           ++IS   K+   DSA  L D++KE  L PTA +Y  +M  YF+   V+ AL ++ EM   
Sbjct: 236 ALISAFGKLNRDDSAVRLFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEMRMR 295

Query: 146 NVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
              P   T++ LI         ED    Y+ +   G +    +   LIN        ++A
Sbjct: 296 RCVPTVYTYTELIRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEA 355

Query: 203 RQVVLDAEIPVKSRSEV--KSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE 260
            ++  +  +   + + V   + + S        S+A    E +K+ G          LI+
Sbjct: 356 VELFEEMRLLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMKKDGVVPSSFTYSILID 415

Query: 261 HLNSEGELNRLIQLLEEVHDPDY--WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDD 318
                  + + + LLEE+ +  +       C LI    + K+  +A +L ++LK+     
Sbjct: 416 GFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQELKENCGSS 475

Query: 319 EMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLK 378
            + +     + F +    +       + L   +K +LG  P     + L+   V A  + 
Sbjct: 476 SVRVYAVMIKHFGKCGRFNE-----AMGLFNEMK-KLGCIPDVYAYNALITGMVRADMMD 529

Query: 379 RAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
            A  +++  E  G   ++ S+  +      +G  K A ++ +KM
Sbjct: 530 EAFSLFRTMEENGCNPDINSHNIILNGLARTGGPKRAMEMFAKM 573



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 154/349 (44%), Gaps = 32/349 (9%)

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM-EQANVKPDS 151
           ++K  + A S+   +K     PTA  YN+++    ++   +    +  EM  + +  PD+
Sbjct: 172 RVKMVNKALSIFYQVKGRKCRPTAGTYNSVILMLMQEGHHEKVHELYNEMCSEGHCFPDT 231

Query: 152 QTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
            T+S LI      + ++  ++ ++++K  G Q T  ++  L+  Y   G+ E+A  +V +
Sbjct: 232 VTYSALISAFGKLNRDDSAVRLFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHE 291

Query: 209 AEIPVKSRSEVKSA-----LVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
               ++ R  V +      L+  L   GR  DA  VY+ + + GC  +   +  LI  L 
Sbjct: 292 ----MRMRRCVPTVYTYTELIRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILG 347

Query: 264 SEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQL-------SSATDLLKQLKDKFK 316
               L   ++L EE+      ++    ++ +    K L       S A+  L+++K   K
Sbjct: 348 RSDRLKEAVELFEEMR----LLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMK---K 400

Query: 317 DDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARD 376
           D  +   + +S +      T+   V+  L LL+ + DE G PP       L+ +   A+ 
Sbjct: 401 DGVVPSSFTYSILIDGFCKTN--RVEKALLLLEEM-DEKGFPPCPAAYCSLINSLGKAKR 457

Query: 377 LKRAHLIWKEY-ENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424
            + A+ +++E  EN G   +V  Y  M K F   G    A  L ++M K
Sbjct: 458 YEAANELFQELKENCG-SSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKK 505



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 112/261 (42%), Gaps = 5/261 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P++  Y  L+     L KV  AL++V +M     VP+  T   ++    +S       
Sbjct: 262 LQPTAKIYTTLMGIYFKLGKVEEALNLVHEMRMRRCVPTVYTYTELIRGLGKSGRVEDAY 321

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +Y  +     KP+     ++I++  +      A  L ++++ +N  P    YN I+   
Sbjct: 322 GVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVELFEEMRLLNCTPNVVTYNTIIKSL 381

Query: 127 FRKKDVQG-ALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQIT 182
           F  K     A   L+ M++  V P S T+S LI   C     E  +   E++   G    
Sbjct: 382 FEDKAPPSEASSWLERMKKDGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPC 441

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRS-EVKSALVSALASHGRTSDAIIVYE 241
              + +LIN+      +E A ++  + +    S S  V + ++      GR ++A+ ++ 
Sbjct: 442 PAAYCSLINSLGKAKRYEAANELFQELKENCGSSSVRVYAVMIKHFGKCGRFNEAMGLFN 501

Query: 242 EIKEAGCNLEPRAVIALIEHL 262
           E+K+ GC  +  A  ALI  +
Sbjct: 502 EMKKLGCIPDVYAYNALITGM 522



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/203 (18%), Positives = 92/203 (45%), Gaps = 3/203 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + PSS +Y  LI   C   +V  AL ++E+M +    P      S++++  ++  +    
Sbjct: 403 VVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAAN 462

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +  +    +   +  MI    K   F+ A  L +++K++  +P    YNA++ G 
Sbjct: 463 ELFQELKENCGSSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGM 522

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
            R   +  A  + + ME+    PD  + + +++        +  ++ + ++KS+  +   
Sbjct: 523 VRADMMDEAFSLFRTMEENGCNPDINSHNIILNGLARTGGPKRAMEMFAKMKSSTIKPDA 582

Query: 184 YVFMALINAYTTCGEFEKARQVV 206
             +  ++   +  G FE+A +++
Sbjct: 583 VSYNTVLGCLSRAGLFEEATKLM 605


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/281 (19%), Positives = 120/281 (42%), Gaps = 10/281 (3%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
            K  + P+  S+  LI   C    +     +   M++  + P   T + +++   +  + 
Sbjct: 252 GKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQL 311

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           +   +++  +C   L PN  TF ++I+ +      D    +   +    + P    YN +
Sbjct: 312 DDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTL 371

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGG 179
           + G  +  D++ A  ++ EM Q  +KPD  T++ LI  C  E D+   ++  +++   G 
Sbjct: 372 INGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGI 431

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAII 238
           ++    F ALI+ +   G+  +A + + +  E  +K      + ++      G   D   
Sbjct: 432 ELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKG---DVKT 488

Query: 239 VYEEIKEAGCNLEPRAVIA---LIEHLNSEGELNRLIQLLE 276
            ++ +KE  C+     V+    L+  L  +G++     LL+
Sbjct: 489 GFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLD 529



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/395 (19%), Positives = 159/395 (40%), Gaps = 51/395 (12%)

Query: 35  EQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKI 94
           E+++     P     N ++H   + ++ N  + ++  I    L+P   +F ++I+   K 
Sbjct: 214 EEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKS 273

Query: 95  KDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTF 154
            + D  + L   + E  + P    Y+ ++ G  ++  +  A  +  EM    + P+  TF
Sbjct: 274 GNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTF 333

Query: 155 SYLI--HNCSNEEDI-IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AE 210
           + LI  H  +   D+ ++ Y+Q+   G +     +  LIN     G+  +A+++V++  +
Sbjct: 334 TTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQ 393

Query: 211 IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGEL-- 268
             +K      + L+      G    A+ + +E+ + G  L+  A  ALI     EG++  
Sbjct: 394 RGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIE 453

Query: 269 --NRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHF 326
               L ++LE    PD   D    +++H                                
Sbjct: 454 AERTLREMLEAGIKPD---DATYTMVIHG------------------------------- 479

Query: 327 SEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKE 386
              FC+       DV+ G  LL+ ++ + G  P     + LL        +K A+++   
Sbjct: 480 ---FCKKG-----DVKTGFKLLKEMQCD-GHVPGVVTYNVLLNGLCKQGQMKNANMLLDA 530

Query: 387 YENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSK 421
             N G+  + ++Y  + +     GNR+   KL S+
Sbjct: 531 MLNLGVVPDDITYNILLEGHCKHGNREDFDKLQSE 565



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/234 (21%), Positives = 108/234 (46%), Gaps = 6/234 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  ++  LI   C   +  + +++ +QM++  + P   T N++++   +  +    +
Sbjct: 326 LVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAK 385

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           ++   +    LKP+  T+  +I    K  D +SA  +  ++ +  +      + A+++G+
Sbjct: 386 KLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGF 445

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK--SAGGQITKY 184
            R+  V  A   L+EM +A +KPD  T++ +IH    + D+   ++ LK     G +   
Sbjct: 446 CREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGV 505

Query: 185 V-FMALINAYTTCGEFEKARQVVLDA--EIPVKSRSEVKSALVSALASHGRTSD 235
           V +  L+N     G+ + A  ++LDA   + V       + L+     HG   D
Sbjct: 506 VTYNVLLNGLCKQGQMKNA-NMLLDAMLNLGVVPDDITYNILLEGHCKHGNRED 558



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/278 (19%), Positives = 119/278 (42%), Gaps = 10/278 (3%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P    +  L+   C   K++ A  +  ++ +  L P+  + N++++   +S   +   R+
Sbjct: 223 PDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRL 282

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +  + + P+  T+  +I+   K    D A  L  ++ +  L+P    +  ++ G+  
Sbjct: 283 KRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCV 342

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYV 185
                  + + ++M +  VKPD  T++ LI+      D+    K   ++   G +  K+ 
Sbjct: 343 TGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFT 402

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK----SALVSALASHGRTSDAIIVYE 241
           +  LI+     G+ E A ++  +    VK   E+     +AL+S     G+  +A     
Sbjct: 403 YTMLIDGCCKEGDLESALEIRKEM---VKEGIELDNVAFTALISGFCREGQVIEAERTLR 459

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279
           E+ EAG   +      +I     +G++    +LL+E+ 
Sbjct: 460 EMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQ 497


>gi|15222753|ref|NP_175959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75140283|sp|Q7X6A5.1|PPR81_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g55630
 gi|30793841|gb|AAP40373.1| unknown protein [Arabidopsis thaliana]
 gi|30794021|gb|AAP40457.1| unknown protein [Arabidopsis thaliana]
 gi|110739296|dbj|BAF01561.1| hypothetical protein [Arabidopsis thaliana]
 gi|332195155|gb|AEE33276.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 477

 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 120/272 (44%), Gaps = 19/272 (6%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELV---PSTETINSILHACEESYEFNLV 65
           P++A    L+  +C   +  +A DVVEQ ++ +     P   + N+ILH+     ++ L+
Sbjct: 184 PTTACTFNLLICTCG--EAGLARDVVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQYKLI 241

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +Y  +      P+  T+  ++  N ++   D  Y LLD++ +    P    YN ++  
Sbjct: 242 DWVYEQMLEDGFTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNILLHH 301

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI--IKYY-EQLKSAGGQIT 182
                    AL +L  M +  V+P    F+ LI   S    +   KY+ ++    G    
Sbjct: 302 LATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTPD 361

Query: 183 KYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAII 238
              +  +I  Y + GE EKA    +++    ++P        ++++      G+  +A  
Sbjct: 362 VVCYTVMITGYISGGELEKAEEMFKEMTEKGQLP---NVFTYNSMIRGFCMAGKFKEACA 418

Query: 239 VYEEIKEAGCNLEPRAVI--ALIEHLNSEGEL 268
           + +E++  GCN  P  V+   L+ +L + G++
Sbjct: 419 LLKEMESRGCN--PNFVVYSTLVNNLKNAGKV 448



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 39/209 (18%), Positives = 86/209 (41%), Gaps = 11/209 (5%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYE----F 62
            TP   +Y  ++  +  L K      ++++MV+    P   T N +LH      +     
Sbjct: 253 FTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAAL 312

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           NL+  +  +     ++P    F ++I    +    ++    +D+  ++   P    Y  +
Sbjct: 313 NLLNHMREV----GVEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVM 368

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGG 179
           + GY    +++ A  + KEM +    P+  T++ +I         ++     ++++S G 
Sbjct: 369 ITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLKEMESRGC 428

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLD 208
                V+  L+N     G+  +A +VV D
Sbjct: 429 NPNFVVYSTLVNNLKNAGKVLEAHEVVKD 457


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/262 (21%), Positives = 118/262 (45%), Gaps = 12/262 (4%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +I+   +      AL++ + M++  + P   T+ +++ AC +S    L R+++  I
Sbjct: 233 SWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWI 292

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
             H    N +   ++I L  K  + ++A  L + L   +++     +N ++ GY      
Sbjct: 293 DDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVIS----WNTLIGGYTHMNLY 348

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI-----IKYYEQLKSAGGQITKYVFM 187
           + AL++ +EM ++   P+  T   ++  C++   I     I  Y   +  G      +  
Sbjct: 349 KEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRT 408

Query: 188 ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           +LI+ Y  CG+ E A QV     I  KS S   +A++   A HGR   +  ++  +++ G
Sbjct: 409 SLIDMYAKCGDIEAAHQVF--NSILHKSLSSW-NAMIFGFAMHGRADASFDLFSRMRKIG 465

Query: 248 CNLEPRAVIALIEHLNSEGELN 269
              +    + L+   +  G L+
Sbjct: 466 IQPDDITFVGLLSACSHSGMLD 487



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/248 (19%), Positives = 103/248 (41%), Gaps = 33/248 (13%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL +   M+   L+P++ T   +L +C +S  F   ++I+  +       +     S+IS
Sbjct: 118 ALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLIS 177

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASM---------------------------YNAI 122
           + V+    + A+ + D     +++   ++                           +NA+
Sbjct: 178 MYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAM 237

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGG 179
           ++GY    + + AL + K+M + NV+PD  T   ++  C+    I    + +  +   G 
Sbjct: 238 ISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGF 297

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
                +  ALI+ Y+ CGE E A    L   +P K      + L+          +A+++
Sbjct: 298 GSNLKIVNALIDLYSKCGELETA--CGLFERLPYKDVISWNT-LIGGYTHMNLYKEALLL 354

Query: 240 YEEIKEAG 247
           ++E+  +G
Sbjct: 355 FQEMLRSG 362



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 20/201 (9%)

Query: 51  SILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEM 110
           S+LH C+      ++      I  HN             L+   +    A S+   ++E 
Sbjct: 38  SLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEP 97

Query: 111 NLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY 170
           NL+    ++N +  G+    D   AL +   M    + P+S TF +++ +C+      K 
Sbjct: 98  NLL----IWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKS----KA 149

Query: 171 YEQLKSAGGQITK-------YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SA 222
           +++ +   G + K       YV  +LI+ Y   G  E A +V   +      R  V  +A
Sbjct: 150 FKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKS----PHRDVVSYTA 205

Query: 223 LVSALASHGRTSDAIIVYEEI 243
           L+   AS G   +A  +++EI
Sbjct: 206 LIKGYASRGYIENAQKLFDEI 226


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 111/271 (40%), Gaps = 16/271 (5%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           ++  +I     L  V  A  +  QMV   + PS  T   +L AC       L +  +  +
Sbjct: 129 TWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQV 188

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
                  +     +++S+ VK    D A  + D L + ++    S +N ++ GY +  D 
Sbjct: 189 IKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDV----STFNVMIGGYAKSGDG 244

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMAL 189
           + A  +   M+Q   KP+  +F  ++  CS  E +      + Q  + G      V  AL
Sbjct: 245 EKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATAL 304

Query: 190 INAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGC 248
           I  Y  CG  E AR+ V D    +K R  V  + ++   A +    DA  ++  ++E G 
Sbjct: 305 IRMYMGCGSIEGARR-VFD---KMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGI 360

Query: 249 NLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279
             +    I +I    S  +L+    L  E+H
Sbjct: 361 QPDRITYIHIINACASSADLS----LAREIH 387



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 110/247 (44%), Gaps = 17/247 (6%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A  +  +M Q    P+  +  SIL  C         + ++    +  L  +     ++I 
Sbjct: 247 AFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIR 306

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           + +     + A  + D +K  +++     +  ++ GY    +++ A  +   M++  ++P
Sbjct: 307 MYMGCGSIEGARRVFDKMKVRDVVS----WTVMIRGYAENSNIEDAFGLFATMQEEGIQP 362

Query: 150 DSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D  T+ ++I+ C++  D+    + + Q+  AG      V  AL++ Y  CG  + ARQ V
Sbjct: 363 DRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQ-V 421

Query: 207 LDAEIPVKSRSEV--KSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
            DA     SR +V   SA++ A   +G   +A   +  +K    N+EP  V+  I  LN+
Sbjct: 422 FDA----MSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRN--NVEPD-VVTYINLLNA 474

Query: 265 EGELNRL 271
            G L  L
Sbjct: 475 CGHLGAL 481



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/206 (20%), Positives = 95/206 (46%), Gaps = 10/206 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A +    M +  + P   T  ++L+AC      +L   IY      +L  +     ++I+
Sbjct: 449 AFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALIN 508

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +NVK    + A  + +++ + +++     +N ++ GY    + + AL +   M +   +P
Sbjct: 509 MNVKHGSIERARYIFENMVQRDVVT----WNVMIGGYSLHGNAREALDLFDRMLKERFRP 564

Query: 150 DSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQI-TKYVFMALINAYTTCGEFEKARQV 205
           +S TF  ++  CS     E+  +++  L    G + T  ++  +++     GE ++A   
Sbjct: 565 NSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAE-- 622

Query: 206 VLDAEIPVKSRSEVKSALVSALASHG 231
           +L   +P+K  S + S L++A   +G
Sbjct: 623 LLINRMPLKPNSSIWSTLLAACRIYG 648



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 70/400 (17%), Positives = 157/400 (39%), Gaps = 18/400 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A DV+ ++ +G     + T   +   C    +  L +++   I     + N     ++I 
Sbjct: 45  ANDVLHRLGEGSNHIDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIK 104

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           L+    +   A    D ++      T   +NAI+AGY +   V+ A  + ++M    ++P
Sbjct: 105 LHSICGNMLEARQTFDSVEN----KTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEP 160

Query: 150 DSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
              TF  ++  CS+   +    +++ Q+   G      +  AL++ Y   G  + ARQV 
Sbjct: 161 SIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVF 220

Query: 207 LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
              +   K      + ++   A  G    A  ++  +++ G      + +++++  ++  
Sbjct: 221 ---DGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPE 277

Query: 267 ELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHF 326
            L     +  +  +     D   R+    +R      + +  +++ DK K  ++      
Sbjct: 278 ALAWGKAVHAQCMNTGLVDD--VRVATALIRMYMGCGSIEGARRVFDKMKVRDVV----- 330

Query: 327 SEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKE 386
           S         +  +++    L   +++E G+ P R     ++ AC ++ DL  A  I  +
Sbjct: 331 SWTVMIRGYAENSNIEDAFGLFATMQEE-GIQPDRITYIHIINACASSADLSLAREIHSQ 389

Query: 387 YENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDD 426
              AG   ++L    +   +   G  K A ++   M + D
Sbjct: 390 VVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRD 429


>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
 gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
          Length = 696

 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 64/293 (21%), Positives = 131/293 (44%), Gaps = 18/293 (6%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQG--ELVPSTETINSILHACEESYE 61
           +L  TP   SY  L+   C   K   A +++  M +      P+  +  +++H     ++
Sbjct: 208 ELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPNVVSYTTVIHG---FFK 264

Query: 62  FNLVRRIYPMICH---HNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM 118
              V + Y + C    H + PN  T  S+I    K++  D A ++L  + + ++MP  + 
Sbjct: 265 EGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTT 324

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI----IKYYEQL 174
           YN+++ GY        A+ +LKEM +   +P+  T+S LI +C  +  +     + +  +
Sbjct: 325 YNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLI-DCLCKSGLHAEAREIFNSM 383

Query: 175 KSAGGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRT 233
             +G +     + +L++ Y T G       V  L  +  ++    V +  + A    GR 
Sbjct: 384 IQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAYCKCGRL 443

Query: 234 SDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN----RLIQLLEEVHDPD 282
            +A + + ++++ G   +  A   +I+ L   G L+    R  Q++++   PD
Sbjct: 444 DEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPD 496



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 64/150 (42%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  +I   C + ++  A+    QM+   L P   T N+++H      ++     +
Sbjct: 460 PDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEEL 519

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    + PN  TF SMI    K      A  L D +      P    YN ++ GYF 
Sbjct: 520 FYEMMDRGIPPNVNTFNSMIDKLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFI 579

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
             +V   + +L +M    +KP + TF+ L+
Sbjct: 580 AGEVGEVMKLLDDMLLIGLKPTAVTFNTLL 609



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/275 (19%), Positives = 106/275 (38%), Gaps = 41/275 (14%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV--R 66
           P+  +Y  LI   C       A ++   M+Q    P+  T  S+LH    + E NLV   
Sbjct: 355 PNVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHG--YATEGNLVDMN 412

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +  ++  + ++P    F   I    K    D A    + +++   MP    Y  ++ G 
Sbjct: 413 NVKDLMVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGL 472

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVF 186
            +   +  A+    +M    + PD  TF+ LIH                           
Sbjct: 473 CKIGRLDDAMSRFCQMIDDGLSPDIITFNTLIH--------------------------- 505

Query: 187 MALINAYTTCGEFEKARQV---VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
                 +   G++EKA ++   ++D  IP        ++++  L   G+ ++A  +++ +
Sbjct: 506 -----GFALHGKWEKAEELFYEMMDRGIP--PNVNTFNSMIDKLFKEGKVTEARKLFDLM 558

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
             AG      +   +I      GE+  +++LL+++
Sbjct: 559 PRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDM 593



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 87/441 (19%), Positives = 177/441 (40%), Gaps = 41/441 (9%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEE---SYE 61
           ++ P  A++  LI+  CD   +++    + Q+++  L     T   +L   C E   S  
Sbjct: 139 KVAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRAQAVTFTPLLRTLCAEKRTSDA 198

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEM--NLMPTASMY 119
            N+V R  P +      P+  ++ +++      K  + A  L+  + E   N  P    Y
Sbjct: 199 MNIVLRRMPEL---GCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPNVVSY 255

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGG 179
             ++ G+F++ DV  A  +  +M    + P+  T + +I      + + K    L+    
Sbjct: 256 TTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQ--- 312

Query: 180 QITKYV------FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGR 232
            I +++      + +LI+ Y + G++ +A +++ +     +  + V  S L+  L   G 
Sbjct: 313 MIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGL 372

Query: 233 TSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGEL---NRLIQLLEE------VHDPDY 283
            ++A  ++  + ++G         +L+    +EG L   N +  L+ +       H  + 
Sbjct: 373 HAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNI 432

Query: 284 WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQI 343
            +   C+    C R  + S   + ++Q    F  D +A       + C+I   D    + 
Sbjct: 433 EIYAYCK----CGRLDEASLTFNKMQQ--QGFMPDIVAYTTVIDGL-CKIGRLDDAMSR- 484

Query: 344 GLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMY 403
                Q I D  GL P     + L+         ++A  ++ E  + G+P NV ++  M 
Sbjct: 485 ---FCQMIDD--GLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRGIPPNVNTFNSMI 539

Query: 404 KAFLASGNRKSASKLLSKMPK 424
                 G    A KL   MP+
Sbjct: 540 DKLFKEGKVTEARKLFDLMPR 560



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 19/142 (13%)

Query: 36  QMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIK 95
           +M+   + P+  T NS++    +  +    R+++ ++     KPN  ++ +MI       
Sbjct: 522 EMMDRGIPPNVNTFNSMIDKLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAG 581

Query: 96  DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFS 155
           +      LLDD+  + L PTA  +N ++ G                M    +KPD  T  
Sbjct: 582 EVGEVMKLLDDMLLIGLKPTAVTFNTLLDG----------------MVSMGLKPDVVTCK 625

Query: 156 YLIHNCSNE---EDIIKYYEQL 174
            LI +C  +   EDI+  + ++
Sbjct: 626 TLIDSCCEDGRIEDILTLFREM 647


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 129/293 (44%), Gaps = 16/293 (5%)

Query: 7   ITPSSASYKKLITYSCDLLKV----HVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           I P   +Y  LI   C + KV    HV  D+ E+     LV  +  I  +  A +     
Sbjct: 228 IVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEAL 287

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
            L R +     +  L P++  + ++I    + K      S+LD++  M L P    Y A+
Sbjct: 288 ELKRSM----ANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTAL 343

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGG 179
           + G+ ++ D+ GA  V +EM    +K ++ T+  LIH      D+ K    + ++   G 
Sbjct: 344 INGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGI 403

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAII 238
           +     +  LI  Y      EKA +++++ +   + + + +  A+V+ L   G  + A  
Sbjct: 404 KPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANE 463

Query: 239 VYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC 289
           +++E+   G  L+P  VI   +++ L  EG     I++L  + D     D  C
Sbjct: 464 LFQEMISWG--LKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFC 514



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 6/187 (3%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSIL-HACEESYEFNLVRRIYPMICHHNLKPNSETF 84
           K+  A+ V  +++   LVP   T  S++ + C+E  +      ++  +C   + PN  T+
Sbjct: 632 KLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEG-DLKAAFELHDDMCKKGINPNIVTY 690

Query: 85  RSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQ 144
            ++I+   K+ +   A  L D + E  L   +  Y+ I+AGY +  ++  A  +   M+ 
Sbjct: 691 NALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKL 750

Query: 145 ANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEK 201
             V PDS  +  LI  C    N E  +  +  +   G   T   F ALI+ +   G+  +
Sbjct: 751 VGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTP-AFNALIDGFFKLGKLIE 809

Query: 202 ARQVVLD 208
           A Q+V D
Sbjct: 810 AYQLVED 816



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 85/427 (19%), Positives = 169/427 (39%), Gaps = 69/427 (16%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA------CEES 59
           +I  ++ +Y  LI   C +  +  A D+  +M    + P  +T N ++         E++
Sbjct: 367 KIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKA 426

Query: 60  YEF-------NLVRRIY------PMICH----------------HNLKPNSETFRSMISL 90
           YE        NL    Y        +CH                  LKPN   + +++  
Sbjct: 427 YELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKG 486

Query: 91  NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD 150
            VK   F+ A  +L  +K+  L P    YN ++ G+ +   ++     L EM    +KP+
Sbjct: 487 LVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPN 546

Query: 151 SQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINAY----TTCGEFEKAR 203
             T+   IH      ++    + + ++  +G      +   LI+ Y     T   F K R
Sbjct: 547 VYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFR 606

Query: 204 QVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
            ++    +P     +  S L+  L+ +G+  +A+ V+ E+ + G   +     +LI +L 
Sbjct: 607 CMLDQGVLP---DVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLC 663

Query: 264 SEGELNRLIQLLEEVH----DPDY-----WMDGCCRLILHCVRFKQLSSATDLLKQLKDK 314
            EG+L    +L +++     +P+       ++G C+L        +++ A +L   + +K
Sbjct: 664 KEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKL-------GEIAKARELFDGIPEK 716

Query: 315 FKDDEMAMEYHFSEIFCQIAT-TDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVN 373
                          +C+ A  T+   +  G+ L       +G+PP       L+  C  
Sbjct: 717 GLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKL-------VGVPPDSFVYCALIDGCCK 769

Query: 374 ARDLKRA 380
           A + ++A
Sbjct: 770 AGNTEKA 776



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/276 (20%), Positives = 113/276 (40%), Gaps = 3/276 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P+      LI   C       A      M+   ++P  +T + ++H   ++ +     
Sbjct: 578 IAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAM 637

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +    L P+  T+ S+IS   K  D  +A+ L DD+ +  + P    YNA++ G 
Sbjct: 638 GVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGL 697

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
            +  ++  A  +   + +  +  +S T+S +I      +N  +  + +  +K  G     
Sbjct: 698 CKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDS 757

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
           +V+ ALI+     G  EKA  + L       + +   +AL+      G+  +A  + E++
Sbjct: 758 FVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTPAFNALIDGFFKLGKLIEAYQLVEDM 817

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279
            +            LIE+  + G +    QL  E+ 
Sbjct: 818 VDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQ 853



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 107/251 (42%), Gaps = 11/251 (4%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P S  Y  LI   C       AL +   MV+ E + ST   N+++    +  +     
Sbjct: 753 VPPDSFVYCALIDGCCKAGNTEKALSLFLGMVE-EGIASTPAFNALIDGFFKLGKLIEAY 811

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           ++   +  +++ PN  T+  +I  +  + +   A  L  ++++ N+MP    Y +++ GY
Sbjct: 812 QLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGY 871

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITK 183
            R         +  EM    +KPD   +S ++     E + I   K  + + S G  + K
Sbjct: 872 NRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCK 931

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSA----LVSALASHGRTSDAIIV 239
            ++  LI+A        +  +V+ + E   K  S++  A    LV      GRT +A+ V
Sbjct: 932 NLYTILIDALCKHNNLSEVLKVLDEVE---KQGSKLSLATCGTLVCCFHRAGRTDEALRV 988

Query: 240 YEEIKEAGCNL 250
            E +  +  NL
Sbjct: 989 LESMVRSFLNL 999



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 84/430 (19%), Positives = 153/430 (35%), Gaps = 64/430 (14%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           ++P    Y  +I   C   K+      + +M+   L P+  T  + +H    + E     
Sbjct: 508 LSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAE 567

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R +  +    + PN      +I    K  +   A++    + +  ++P    ++ ++ G 
Sbjct: 568 RSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGL 627

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITK 183
            +   +Q A+ V  E+    + PD  T++ LI N   E D+   +E    +   G     
Sbjct: 628 SKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNI 687

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVK--SRSEVK-SALVSALASHGRTSDAIIVY 240
             + ALIN     GE  KAR++  D  IP K  +R+ V  S +++        ++A  ++
Sbjct: 688 VTYNALINGLCKLGEIAKAREL-FDG-IPEKGLARNSVTYSTIIAGYCKSANLTEAFQLF 745

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCR-------LIL 293
             +K  G   +     ALI                          DGCC+       L L
Sbjct: 746 HGMKLVGVPPDSFVYCALI--------------------------DGCCKAGNTEKALSL 779

Query: 294 HCVRFKQLSSATDLLKQLKDKF-KDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIK 352
                ++  ++T     L D F K  ++   Y   E        D  D  I         
Sbjct: 780 FLGMVEEGIASTPAFNALIDGFFKLGKLIEAYQLVE--------DMVDNHI--------- 822

Query: 353 DELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNR 412
                 P+      L+       ++K A  ++ E +   +  NVL+Y  +   +   G R
Sbjct: 823 -----TPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRR 877

Query: 413 KSASKLLSKM 422
                L  +M
Sbjct: 878 SEMFSLFDEM 887


>gi|125577145|gb|EAZ18367.1| hypothetical protein OsJ_33897 [Oryza sativa Japonica Group]
          Length = 730

 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 126/262 (48%), Gaps = 37/262 (14%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI----YPMICHHNLKPNSE 82
           V + + +   M+   ++P+  T+ S++  C    + NL +++    + + C  NL   + 
Sbjct: 222 VELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNS 281

Query: 83  TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR-----KKDVQG--- 134
           T    + L ++  + D A  L + +++ +++     +NA+++GY +     K D+Q    
Sbjct: 282 T----MYLYLRKGETDEAMRLFEQMEDASIIT----WNAMISGYAQIMDSAKDDLQARSR 333

Query: 135 ---ALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFM---- 187
              AL + ++++++ +KPD  TFS ++  CS     +   EQ +    Q  K  F+    
Sbjct: 334 GFQALTIFRDLKRSVMKPDLFTFSSILSVCS----AMMALEQGEQIHAQTIKSGFLSDVV 389

Query: 188 ---ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
              AL+N Y  CG  + A +  L  E+P ++     S ++S  + HG+  +AI ++EE++
Sbjct: 390 VNSALVNMYNKCGCIQDANKAFL--EMPTRTFVTWTS-MISGYSQHGQPQEAIQLFEEMR 446

Query: 245 EAGCNLEPRAVIALIEHLNSEG 266
            AG        ++L+   +  G
Sbjct: 447 LAGVRPNEITFVSLLSACSYAG 468



 Score = 42.4 bits (98), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 52/247 (21%), Positives = 99/247 (40%), Gaps = 32/247 (12%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL +   + +  + P   T +SIL  C          +I+              F S + 
Sbjct: 337 ALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSG-------FLSDVV 389

Query: 90  LNVKIKDFDSAYSLLDDLKEMNL-MPTASM--YNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           +N  + +  +    + D  +  L MPT +   + ++++GY +    Q A+ + +EM  A 
Sbjct: 390 VNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAG 449

Query: 147 VKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYV-------FMALINAYTTC 196
           V+P+  TF  L+  CS     E+   Y++ +K       +Y        +  +I+ +   
Sbjct: 450 VRPNEITFVSLLSACSYAGLVEEAEHYFDMMKK------EYCIEPVVDHYGCMIDMFVRL 503

Query: 197 GEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI 256
           G  E A   +       +    + S+LV+   SHG    A    +++ E    L+P+ + 
Sbjct: 504 GRVEDAFSFI--KRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLE----LKPKGIE 557

Query: 257 ALIEHLN 263
             I  LN
Sbjct: 558 TYILLLN 564


>gi|409080534|gb|EKM80894.1| hypothetical protein AGABI1DRAFT_126951 [Agaricus bisporus var.
           burnettii JB137-S8]
          Length = 1013

 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 105/244 (43%), Gaps = 16/244 (6%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M  KL + P    +  +I   C L +   AL V++ M    + PS  T   +    E+  
Sbjct: 277 MLQKLNVQPEEHHFAAIIEAFCRLRQFKEALLVLDLMTSSNITPSAGTTKPLSDHIEQDA 336

Query: 61  E-FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMY 119
           E  +   R    +     + +    R++IS  +   +F  A +  + L   NL P  S++
Sbjct: 337 ESIDATWRAIDELHKDGRRIDISAPRAVISAAISQNNFSKAIAFYEALPGFNLSPDLSIF 396

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKS 176
           N ++ G  +  D Q    +L  M+   +KP+  T+   I+ C   S+ ED   Y E++K+
Sbjct: 397 NLLLQGCVQIADRQLGDTILTNMKANKIKPNQDTYGNFINLCLTQSSYEDAFFYLEEMKA 456

Query: 177 AGGQITKYVFMALIN------------AYTTCGEFEKARQVVLDAEIPVKSRSEVKSALV 224
           AG + +  V++AL++            A     E   +RQ  L    P ++ S+ ++   
Sbjct: 457 AGFKPSASVYIALVDKCFESNDLRYQIALEEMEECGSSRQTTLSGTTPAETASKKQAKHD 516

Query: 225 SALA 228
           S LA
Sbjct: 517 STLA 520



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
            ++PN   +  ++        +  A+++LDD++ + + P    +N ++    R +     
Sbjct: 71  GVQPNLVIYNCLLEAAAHGAFWLEAWAILDDMRLLGIEPNIMSFNYLLHA-VRYRHSHHV 129

Query: 136 LMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI 167
             VLK+ME   VKP+SQT + LI     E+++
Sbjct: 130 ARVLKKMEDCGVKPNSQTLNLLITRYVAEDNL 161


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 86/399 (21%), Positives = 163/399 (40%), Gaps = 31/399 (7%)

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
           FN + R++P        P +  F  ++   V++  + +A SL   L+   + P+ + +  
Sbjct: 43  FNRMVRVFP-------PPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTI 95

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAG 178
           ++  YF +     A  +L  + ++  +P+  TF+ +I+       I K   + + L + G
Sbjct: 96  LINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQG 155

Query: 179 GQITKYVFMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAI 237
               ++ +  LIN  +  G+ + A  ++ + E   V+    + SAL+  L   G  SDA+
Sbjct: 156 YLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDAL 215

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLL-----EEVHDPDYWMDGCCRLI 292
            +  +I E G  L+     +LI+   S G    + QLL     E V   DY  +    LI
Sbjct: 216 GLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFN---ILI 272

Query: 293 LHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIK 352
               +  ++  A  +L  +  + +  ++       E +C        +V    +L   + 
Sbjct: 273 DALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCS-----RENVHEARELFNRMV 327

Query: 353 DELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNR 412
              GL P     + L+      + +  A +++KE  N  L   + SY  +      SG  
Sbjct: 328 KR-GLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRI 386

Query: 413 KSASKLLSKM-----PKDDPHVRFVIQA-CKQTYTIPSL 445
               KLL +M     P D      +I A CK+   + +L
Sbjct: 387 SHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEAL 425



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 97/471 (20%), Positives = 174/471 (36%), Gaps = 62/471 (13%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  + P+   Y  LI   C    V  AL +  Q+ +  ++    T NS++  C     + 
Sbjct: 188 KSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQ 247

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
            V ++   +   N+ P+  TF  +I    K      A  +L  + +    P    YNA+M
Sbjct: 248 EVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALM 307

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQ 180
            GY  +++V  A  +   M +  ++PD   ++ LI   C  +  ++ +  +++L +    
Sbjct: 308 EGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLV 367

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDA--- 236
            T   + +LI+     G     ++++ +     +    V  + L+ AL   GR  +A   
Sbjct: 368 PTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGV 427

Query: 237 ------------IIVYEEIKEAGC------------------NLEPRAV--IALIEHLNS 264
                       I+ Y  + +  C                   LEP  +    LI     
Sbjct: 428 LVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCK 487

Query: 265 EGELNRLIQLLEEVHD----PDY-----WMDGCCRLILHCVRFKQLSSATDLLKQLKDKF 315
              ++  I L +E+      PD       +DG C L        ++    +LL ++ D  
Sbjct: 488 TEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNL-------GRIPHVQELLDEMCDSG 540

Query: 316 KDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNAR 375
           +  ++       + FC+   T P D  I L   Q ++   G+ P       ++       
Sbjct: 541 QSPDVITYNILLDAFCK---TQPFDKAISL-FRQIVE---GIWPDFYTNHAIVDNLCKGE 593

Query: 376 DLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDD 426
            LK A    K     G   NV +Y  +  A    G+   A  LLSKM  +D
Sbjct: 594 KLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDND 644



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 72/158 (45%), Gaps = 1/158 (0%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           MH   +  P   +Y  LI   C   ++  AL V+  M++  + P+  T N+++       
Sbjct: 396 MHGSAQ-PPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRN 454

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
             N+ + I+  +    L+P+   +  +I+   K +  D A  L  +++  NL+P  + YN
Sbjct: 455 NVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYN 514

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
           +++ G      +     +L EM  +   PD  T++ L+
Sbjct: 515 SLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILL 552



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 59/315 (18%), Positives = 127/315 (40%), Gaps = 42/315 (13%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
            K  + P   +Y  LI   C    V  A+ + +++    LVP+  + NS++     S   
Sbjct: 327 VKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRI 386

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           + V+++   +      P+  T+  +I    K      A  +L  + +  + P    YNA+
Sbjct: 387 SHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAM 446

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGG 179
           M GY  + +V  A  +   M ++ ++PD   ++ LI+  C  E  ++ I  +++++    
Sbjct: 447 MDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNL 506

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
                 + +LI+     G     ++                  L+  +   G++ D +I 
Sbjct: 507 IPDIASYNSLIDGLCNLGRIPHVQE------------------LLDEMCDSGQSPD-VIT 547

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD---PDYWMDGCCRLILHCV 296
           Y  + +A C  +P                ++ I L  ++ +   PD++ +    ++ +  
Sbjct: 548 YNILLDAFCKTQP---------------FDKAISLFRQIVEGIWPDFYTNHA--IVDNLC 590

Query: 297 RFKQLSSATDLLKQL 311
           + ++L  A D LK L
Sbjct: 591 KGEKLKMAEDALKHL 605



 Score = 44.7 bits (104), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 53/280 (18%), Positives = 117/280 (41%), Gaps = 14/280 (5%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  ++  +I   C    +  ALD  + ++    +    T  ++++   ++ +      +
Sbjct: 123 PNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHL 182

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +   +++PN   + ++I    K      A  L   + E  ++  A  YN+++ G   
Sbjct: 183 LQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCS 242

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYV 185
               Q    +L +M + NV PD  TF+ LI     E  I++       +   G +     
Sbjct: 243 VGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVT 302

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEV--KSALVSALASHGRTSDAIIVYEEI 243
           + AL+  Y +     +AR+ + +  +      +V   + L+          +A+++++E+
Sbjct: 303 YNALMEGYCSRENVHEARE-LFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKEL 361

Query: 244 KEAGCNLEPRAVIA----LIEHLNSEGELNRLIQLLEEVH 279
               CN      IA    LI+ L + G ++ + +LL+E+H
Sbjct: 362 ----CNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMH 397



 Score = 38.9 bits (89), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 1/153 (0%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
            + P  ASY  LI   C+L ++    +++++M      P   T N +L A  ++  F+  
Sbjct: 505 NLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKA 564

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             ++  I    + P+  T  +++    K +    A   L  L      P    Y  ++  
Sbjct: 565 ISLFRQIVE-GIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINA 623

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
             +      A+++L +ME  +  PD+ TF  +I
Sbjct: 624 LCKDGSFGEAMLLLSKMEDNDRPPDAITFEIII 656


>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 807

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 65/324 (20%), Positives = 141/324 (43%), Gaps = 18/324 (5%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMV-QGELVPSTETI-NSILHACEESYE 61
           +L   P + SY  ++   CD  +   ALD++   V QG   P    + ++++H   +  +
Sbjct: 167 ELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCNVVVYSTVVHGLFKEGK 226

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
                 ++  +    + PN  T+ S+I    K +  D A  +L  +    + P    YN 
Sbjct: 227 VGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYNT 286

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDS---QTFSYLIHNCSNEEDIIKYYEQLKSAG 178
           ++ GY      + A+ + KEM    V P++    TF   +      E+  ++++ + + G
Sbjct: 287 LIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKG 346

Query: 179 GQITKYVFMALINAYTTCGEFEKARQV----VLDAEIPVKSRSEVKSALVSALASHGRTS 234
            ++    +  L++ Y T G       +    V D  +P      V + LV+  A  G   
Sbjct: 347 HKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVP---NQHVFNILVNGYAKCGMVR 403

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE----LNRLIQLLEEVHDPDYWMDGCCR 290
           +A+ ++E++++ G N +    +A+I      G     +++   ++++  +P++ +  C  
Sbjct: 404 EAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQC-- 461

Query: 291 LILHCVRFKQLSSATDLLKQLKDK 314
           LI        L  A +L+ ++++K
Sbjct: 462 LIQGFCTHGDLVKAEELVYEIRNK 485



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 71/338 (21%), Positives = 137/338 (40%), Gaps = 60/338 (17%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  +I   C    V  A  ++ QMV   + P   T N+++H      ++    
Sbjct: 242 VPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAV 301

Query: 67  RIYPMICHHNLKPNS--------------------ETFRSM---------ISLNVKIKDF 97
           R++  +    + PN+                    E F SM         IS +  +  +
Sbjct: 302 RMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTLLHGY 361

Query: 98  DSAYSLLDDLKEMNLM------PTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151
            +A  L+D     NLM      P   ++N ++ GY +   V+ A+ + ++M++  + PD 
Sbjct: 362 ATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDV 421

Query: 152 QTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
            T+  +IH      + +D +  +  +   G +    V+  LI  + T G+  KA ++V  
Sbjct: 422 LTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVY- 480

Query: 209 AEIPVKSRSEVK---SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
            EI  K         ++L++ L   GR  +A  +++ I   G   +     +LI+     
Sbjct: 481 -EIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLI 539

Query: 266 GELNRLIQLLEEVHD--------PDY-----WMDGCCR 290
           G+++   +    VHD        PD       ++GCC+
Sbjct: 540 GKMSEAFR----VHDAMVSVGIEPDIVTYGTLVNGCCK 573



 Score = 45.4 bits (106), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 62/315 (19%), Positives = 127/315 (40%), Gaps = 26/315 (8%)

Query: 118 MYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQL 174
           +Y+ ++ G F++  V  A  +  EM Q  V P+  T++ +IH       + K      Q+
Sbjct: 213 VYSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQM 272

Query: 175 KSAGGQITKYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASH 230
              G Q     +  LI+ Y+T G++++A    +++     IP    +   S  V+ L  H
Sbjct: 273 VGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIP---NTVTCSTFVAFLCKH 329

Query: 231 GRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG---ELNRLIQLLEEVHD---PDYW 284
           GR  +A   ++ +   G  L   +   L+    + G   +++ L  L+  V D   P+  
Sbjct: 330 GRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLM--VRDGIVPNQH 387

Query: 285 MDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIG 344
           +     L+    +   +  A  + + ++ +  + ++         FC++ + D       
Sbjct: 388 VFNI--LVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDD-----A 440

Query: 345 LDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYK 404
           +D    + D+ G+ P+      L+       DL +A  +  E  N GL   +LS+  +  
Sbjct: 441 MDKFNHMIDK-GVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLIN 499

Query: 405 AFLASGNRKSASKLL 419
                G    A ++ 
Sbjct: 500 HLCKEGRVFEAQRIF 514



 Score = 38.5 bits (88), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 28/163 (17%), Positives = 69/163 (42%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P++ +Y  ++       +   A ++ ++M++  +  +  T + +L     +       
Sbjct: 592 VKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAI 651

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +C  N+K +      MIS   K +  + A  L   + +  L+PT   Y  +M   
Sbjct: 652 TVFQKLCAMNVKFDIVILNIMISKMFKARRREEAEGLFASIPDYGLVPTVQTYTIMMENL 711

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK 169
            ++  V+ A  V   M ++ + P S   + ++     + +I+K
Sbjct: 712 IKEGSVEEAEGVFSVMLKSGLSPTSHFINVIVRTLLEKGEIVK 754



 Score = 38.1 bits (87), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 32/173 (18%), Positives = 72/173 (41%), Gaps = 7/173 (4%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   S+  LI + C   +V  A  + + +++           S++       + +   
Sbjct: 487 LGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAF 546

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R++  +    ++P+  T+ ++++   K    D    L  +L    + PT   Y  I+ G 
Sbjct: 547 RVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGL 606

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI-----HNCSNEEDIIKYYEQL 174
           F       A  + +EM ++ +     T+S L+     +NC+  E+ I  +++L
Sbjct: 607 FHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCT--EEAITVFQKL 657


>gi|298712182|emb|CBJ33054.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 903

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 91/432 (21%), Positives = 164/432 (37%), Gaps = 38/432 (8%)

Query: 50  NSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKE 109
           N+ L ACE   ++     +   +    +KP   ++ ++IS   K  + D A +LL ++ E
Sbjct: 461 NTALSACEVGEQWGRALSLLRDMPKRGVKPVVISYNTVISACGKCGEGDQALALLREMPE 520

Query: 110 MNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---ED 166
             LMP    +N+ +A          A+ +++EM +A V  D+ T+S  +   ++    E 
Sbjct: 521 RGLMPDVITFNSAIAALSNSGRPDDAVRLMREMPRAGVAADAITYSSALTGLAHAGRWEQ 580

Query: 167 IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ-VVLDAEIPVKSRSE---VKSA 222
            +    +++ AG   T   + A I A   CGE  K  + ++L  E+P    +      SA
Sbjct: 581 ALSLLREMQGAGVSPTVICYTAAIRA---CGEAGKGDEALLLLREMPTAGVTPNLFSYSA 637

Query: 223 LVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQ-----LLEE 277
            +SA    GR    + +  E+   G         A I      G+  R +      +   
Sbjct: 638 TISACGKDGRWEQGLALLNEMPALGLTPNEFCYTAAITGCGIGGQWERAVATFRSMIASG 697

Query: 278 VHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTD 337
           +             + HC    ++  A +LL ++K++   +     Y    + C      
Sbjct: 698 IQPTVVGYTSAVSALAHC---GEVDLALELLSEMKEEAGIEPNEQTYAAVILACGNGGQG 754

Query: 338 PPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVL 397
               Q+  D+        G+ P        + A     +   A  +  E E AG+P  V 
Sbjct: 755 HLVAQVQRDMAS-----AGITPRLTGYLSAIRASGECGNWSEATSLLGEMEAAGVPPTVS 809

Query: 398 SYLWMYKAFLASGNRKSASKLLSKMP-----KDDPHVRFVIQACKQTYT----------I 442
            Y     A   SG  + A  LL +MP     +D   +   I AC++             +
Sbjct: 810 CYNAAITACGKSGKWQEALDLLDEMPGKGLVRDSGTLSAAISACQKAGRGVKAAGLVEEM 869

Query: 443 PSLQKERGFEKD 454
             + +E+G E+D
Sbjct: 870 LEMAREKGGERD 881



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 59/277 (21%), Positives = 119/277 (42%), Gaps = 45/277 (16%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYE----FNLVR--- 66
           Y K I+      +   ALD++ +M +   +P++  +N+ L AC ++        L+R   
Sbjct: 127 YSKCISRMAKCFRWGEALDILARMAELGAMPNSYCVNAALDACGKAGRVQEALGLMRDAR 186

Query: 67  -----------------------------RIYPMICHHNLKPNSETFRSMISLNVKIKDF 97
                                         I  M   + +KPN  T+++ I +  +    
Sbjct: 187 ASGIELDVVSYNCAIPACVTGGDWELALSMIREMEAEYGIKPNHITYQAAIKVCGRCGKA 246

Query: 98  DSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYL 157
           D A SLL ++K+  +    S+Y+A+   + R    Q A   L+E+    VKP+   ++  
Sbjct: 247 DEAASLLIEMKDGGVPLKTSVYSAVFNAFRRVDHWQAAASTLREIHDWPVKPNVFNYNLA 306

Query: 158 IHNCSN----EE--DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AE 210
           I  C++    EE  D++ +  ++      +  Y    ++ A    G+ EKA ++  + +E
Sbjct: 307 ICTCTDCGEWEEALDLLHFMREVGGVEPDVVTYNI--VVAACGKAGQGEKAIEIFREMSE 364

Query: 211 IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           + +K      +  +SA  S G + +A+ ++ E++ AG
Sbjct: 365 VGIKPDVISFTTAISACGSCGLSEEALSIFREMERAG 401



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 79/173 (45%), Gaps = 7/173 (4%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQ-GELVPSTETINSILHACEESYEFNLV 65
           I P+   Y   ++      +V +AL+++ +M +   + P+ +T  +++ AC    + +LV
Sbjct: 698 IQPTVVGYTSAVSALAHCGEVDLALELLSEMKEEAGIEPNEQTYAAVILACGNGGQGHLV 757

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            ++   +    + P    + S I  + +  ++  A SLL +++   + PT S YNA +  
Sbjct: 758 AQVQRDMASAGITPRLTGYLSAIRASGECGNWSEATSLLGEMEAAGVPPTVSCYNAAITA 817

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAG 178
             +    Q AL +L EM    +  DS T S  I  C       K    +K+AG
Sbjct: 818 CGKSGKWQEALDLLDEMPGKGLVRDSGTLSAAISACQ------KAGRGVKAAG 864



 Score = 43.5 bits (101), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 60/302 (19%), Positives = 120/302 (39%), Gaps = 19/302 (6%)

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGG 179
           MA  FR  +   AL +L  M +    P+S   +  +  C      ++ +      +++G 
Sbjct: 134 MAKCFRWGE---ALDILARMAELGAMPNSYCVNAALDACGKAGRVQEALGLMRDARASGI 190

Query: 180 QITKYVFMALINAYTTCGEFEKARQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDAI 237
           ++    +   I A  T G++E A  ++  ++AE  +K       A +      G+  +A 
Sbjct: 191 ELDVVSYNCAIPACVTGGDWELALSMIREMEAEYGIKPNHITYQAAIKVCGRCGKADEAA 250

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYWMDGCCRLIL 293
            +  E+K+ G  L+     A+                L E+HD    P+ +       I 
Sbjct: 251 SLLIEMKDGGVPLKTSVYSAVFNAFRRVDHWQAAASTLREIHDWPVKPNVFNYNL--AIC 308

Query: 294 HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKD 353
            C    +   A DLL  +++    +   + Y+     C  A      ++I  ++      
Sbjct: 309 TCTDCGEWEEALDLLHFMREVGGVEPDVVTYNIVVAACGKAGQGEKAIEIFREM-----S 363

Query: 354 ELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRK 413
           E+G+ P        + AC +    + A  I++E E AG+  N++++  +  A +A+G  +
Sbjct: 364 EVGIKPDVISFTTAISACGSCGLSEEALSIFREMERAGVRPNIITHNAVMSACIAAGQWE 423

Query: 414 SA 415
            A
Sbjct: 424 EA 425


>gi|302821741|ref|XP_002992532.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
 gi|300139734|gb|EFJ06470.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
          Length = 759

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/261 (21%), Positives = 122/261 (46%), Gaps = 13/261 (4%)

Query: 29  VALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
            AL +  +M++  + P   T N+++ A   +  +    RI+  +    +  +  T+ ++I
Sbjct: 207 TALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLI 266

Query: 89  SLNVKIKDFDSAYSLLDDL-KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANV 147
           +   +        +L++ + K   + P+   Y+ ++ GY +      A+ + +EM   NV
Sbjct: 267 ATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNV 326

Query: 148 KPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204
           +PD   ++ ++       N ++       ++ AG       + AL+++Y   G+F +A  
Sbjct: 327 EPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMS 386

Query: 205 VVLDAEIPVKSRSE---VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALI 259
           ++   E+  +  S      SAL+ A   HG   DA+ +++++K+AG  L+P  V+   L+
Sbjct: 387 LL--EEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAG--LQPDVVLYSTLV 442

Query: 260 EHLNSEGELNRLIQLLEEVHD 280
           +     G  +  + LLEE+ D
Sbjct: 443 DGCCKNGSPDEALALLEEMAD 463



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 97/200 (48%), Gaps = 4/200 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELV-PSTETINSILHACEESYEFNLV 65
           I     +Y  LI   C   ++H+   ++E M +   + PS  T ++++    +    +  
Sbjct: 255 IARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEA 314

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             ++  + + N++P+   + +M+ ++ ++ +FD A+S+   ++E         YNA++  
Sbjct: 315 IALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDS 374

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSN--EEDIIKYYEQLKSAGGQIT 182
           Y ++   + A+ +L+EM+Q    P+  T+S LI   C +    D +  ++ +K AG Q  
Sbjct: 375 YGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPD 434

Query: 183 KYVFMALINAYTTCGEFEKA 202
             ++  L++     G  ++A
Sbjct: 435 VVLYSTLVDGCCKNGSPDEA 454



 Score = 43.1 bits (100), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 30/152 (19%), Positives = 61/152 (40%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P    Y  ++     L     A  +   M +        T N++L +  +  +F    
Sbjct: 326 VEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAM 385

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +      PN  T+ ++I    K      A +L  D+K+  L P   +Y+ ++ G 
Sbjct: 386 SLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGC 445

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            +      AL +L+EM    ++P+  T++ L+
Sbjct: 446 CKNGSPDEALALLEEMADNGIRPNVITYNSLL 477



 Score = 38.9 bits (89), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 43/218 (19%), Positives = 92/218 (42%), Gaps = 52/218 (23%)

Query: 15  KKLITYSCDL------LKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVRR 67
           K ++TY+  L       K   A+ ++E+M Q    P+  T ++++ A C+  +  + +  
Sbjct: 363 KDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMA- 421

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           ++  +    L+P+   + +++    K    D A +LL+++ +  + P    YN+++  Y 
Sbjct: 422 LFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAYG 481

Query: 128 RK---------------------------KDVQGALM--------------VLKEMEQAN 146
           R+                           +D Q +L+              V +EM +  
Sbjct: 482 RQCLMVRKTFPKLRFFLLPRVTMLLKPSMQDDQQSLVDPKQKQALVLAAARVFREMAKNG 541

Query: 147 VKPDSQTFSYLIHNCS---NEEDIIKYYEQLKSAGGQI 181
           VKP+  TFS +++ CS   + ED     E ++   G++
Sbjct: 542 VKPNVVTFSSILNACSHCASVEDASNLLEAMRVFDGRV 579


>gi|302819136|ref|XP_002991239.1| hypothetical protein SELMODRAFT_448344 [Selaginella moellendorffii]
 gi|300140950|gb|EFJ07667.1| hypothetical protein SELMODRAFT_448344 [Selaginella moellendorffii]
          Length = 561

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 110/234 (47%), Gaps = 41/234 (17%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P +  Y  +I       KV  A+ V + M +  +  +  T NS+L AC+++++     
Sbjct: 258 VKPDARMYNLMIHTYGKQGKVEQAMSVYQSMKRERVALTIVTFNSLL-ACQKTWKD--AE 314

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +    L P+  ++ ++++   K +  + A++  DD+    + PT   YNA++  Y
Sbjct: 315 DVFRKLQAAKLDPDVFSYTALVNAYAKARRAECAHAAFDDMIAAGIRPTQVAYNALINAY 374

Query: 127 FRKKDVQGALMVLKEMEQ-----------------------------------ANVKPDS 151
            + KD +GA  VLK+M+Q                                   A+++P+ 
Sbjct: 375 AKCKDPEGARAVLKQMKQNGCTPTVESYTSLISAYVSVNLMAKAEQTVLRMKEADLQPNL 434

Query: 152 QTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
           QTF  L+   +N    +++++ +E +K AG +  ++V+  L+NAY +  +F+ A
Sbjct: 435 QTFCVLMTGYANGNKLDNMMRSFETMKLAGLEPNRHVYTVLVNAYGSNDDFDSA 488



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/247 (20%), Positives = 105/247 (42%), Gaps = 5/247 (2%)

Query: 17  LITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHN 76
           L+ Y C   +V     + ++M +  +V + E     +        F+    ++  +    
Sbjct: 161 LLAY-CKDGQVDKTEGIFQRMAELGVVANIEMYTLQIEGYGRRRSFDKAEAVFQRLLTTG 219

Query: 77  LKPNSETFRSMI---SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
             P ++T+++M+   S   ++ D    + L+ D     + P A MYN ++  Y ++  V+
Sbjct: 220 PSPTAQTYQTMMKSYSEAGRLDDVQRIFKLVTDSPSPTVKPDARMYNLMIHTYGKQGKVE 279

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAY 193
            A+ V + M++  V     TF+ L+      +D    + +L++A      + + AL+NAY
Sbjct: 280 QAMSVYQSMKRERVALTIVTFNSLLACQKTWKDAEDVFRKLQAAKLDPDVFSYTALVNAY 339

Query: 194 TTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP 252
                 E A     D     ++      +AL++A A       A  V +++K+ GC    
Sbjct: 340 AKARRAECAHAAFDDMIAAGIRPTQVAYNALINAYAKCKDPEGARAVLKQMKQNGCTPTV 399

Query: 253 RAVIALI 259
            +  +LI
Sbjct: 400 ESYTSLI 406



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/179 (20%), Positives = 77/179 (43%), Gaps = 5/179 (2%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           AKL+  P   SY  L+       +   A    + M+   + P+    N++++A  +  + 
Sbjct: 323 AKLD--PDVFSYTALVNAYAKARRAECAHAAFDDMIAAGIRPTQVAYNALINAYAKCKDP 380

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
              R +   +  +   P  E++ S+IS  V +     A   +  +KE +L P    +  +
Sbjct: 381 EGARAVLKQMKQNGCTPTVESYTSLISAYVSVNLMAKAEQTVLRMKEADLQPNLQTFCVL 440

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAG 178
           M GY     +   +   + M+ A ++P+   ++ L++   + +D    I +Y+Q+   G
Sbjct: 441 MTGYANGNKLDNMMRSFETMKLAGLEPNRHVYTVLVNAYGSNDDFDSAIIWYKQMLGTG 499


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 114/247 (46%), Gaps = 22/247 (8%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTE-TINSILHACEESYEFNLVRRI 68
           +S S+  +I    +      AL + ++MV GE V  T+ ++ + LHAC E    +  RR+
Sbjct: 392 NSVSWNAMIKGYAENGDATEALALFKRMV-GEGVDVTDVSVLAALHACGELGFLDEGRRV 450

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           + ++    L+ N     ++I++  K K  D A  + D+L       T   +NA++ G  +
Sbjct: 451 HELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELG----YKTRVSWNAMILGCTQ 506

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK----- 183
               + A+ +   M+  NVKPDS T   +I   ++  D +    Q +   G   +     
Sbjct: 507 NGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPL----QARWIHGYSIRLHLDQ 562

Query: 184 --YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVY 240
             YV  ALI+ Y  CG    AR +   A    + R  +  +A++    SHG    A+ ++
Sbjct: 563 DVYVLTALIDMYAKCGRVSIARSLFNSA----RDRHVITWNAMIHGYGSHGSGKVAVELF 618

Query: 241 EEIKEAG 247
           EE+K +G
Sbjct: 619 EEMKSSG 625



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 109/235 (46%), Gaps = 20/235 (8%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P   T  S+L  C    +    R ++  +    L P +    ++ ++  K +    A  +
Sbjct: 223 PVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRV 282

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGAL-MVLKEMEQANVKPDSQTFSYLIHNCS 162
            D +   + +     +NA++AGY R    + A+ MV++  E+   +PD+ T   ++  C+
Sbjct: 283 FDRMPARDRVA----WNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACA 338

Query: 163 NEEDIIKYYE--QLKSAGG---QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRS 217
           + + +    E       GG   Q+   V  A+++ Y  CG  + AR+ V D    ++ R+
Sbjct: 339 DAQALGACREVHAFAVRGGFDEQVN--VSTAILDVYCKCGAVDSARK-VFDG---MQDRN 392

Query: 218 EVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRL 271
            V  +A++   A +G  ++A+ +++ +   G ++   +V+A    L++ GEL  L
Sbjct: 393 SVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAA---LHACGELGFL 444



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 107/269 (39%), Gaps = 26/269 (9%)

Query: 24  LLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSET 83
           L +  V + V  Q   GE  P   T+ S+L AC ++      R ++              
Sbjct: 306 LAEAAVGMVVRMQEEDGER-PDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNV 364

Query: 84  FRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME 143
             +++ +  K    DSA  + D +++ N +     +NA++ GY    D   AL + K M 
Sbjct: 365 STAILDVYCKCGAVDSARKVFDGMQDRNSVS----WNAMIKGYAENGDATEALALFKRMV 420

Query: 144 QANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFE 200
              V     +    +H C      ++  + +E L   G +    V  ALI  Y  C   +
Sbjct: 421 GEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTD 480

Query: 201 KARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE 260
            A QV    E+  K+R    +A++     +G + DA+ ++  ++    N++P +      
Sbjct: 481 LAAQVF--DELGYKTRVSW-NAMILGCTQNGSSEDAVRLFSRMQLE--NVKPDSFT---- 531

Query: 261 HLNSEGELNRLIQLLEEVHDP--DYWMDG 287
                  L  +I  L ++ DP    W+ G
Sbjct: 532 -------LVSIIPALADISDPLQARWIHG 553


>gi|356547408|ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Glycine max]
          Length = 631

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 94/411 (22%), Positives = 167/411 (40%), Gaps = 28/411 (6%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHH-NLKPNSETFR 85
           V+ AL V  Q+   +  P+  T NSI+    +      V  +Y  +C   +  P++ T+ 
Sbjct: 169 VNRALSVFYQVKGRKCRPTASTYNSIILMLMQEGHHEKVHELYNEMCSEVHCFPDTVTYS 228

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           ++IS   K+   DSA  L D++KE  L PTA +Y  +M  YF+   V+ AL ++KEM   
Sbjct: 229 ALISAFAKLNRDDSAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALGLVKEMRAR 288

Query: 146 NVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
                  T++ LI         ED    Y+ +   G +    +   LIN          A
Sbjct: 289 RCLLTVFTYTELIRGLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINILGRSNHLRDA 348

Query: 203 RQV-----VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIA 257
            ++     +L+    V + + +  +L  A A     S+A   +E +K+ G          
Sbjct: 349 IKLFDEMKLLNCAPNVVTYNTIIKSLFEAKAP---LSEASSWFERMKKDGIVPSSFTYSI 405

Query: 258 LIEHLNSEGELNRLIQLLEEVHDPDY--WMDGCCRLILHCVRFKQLSSATDLLKQLKDKF 315
           LI+       + + + LLEE+ +  +       C LI      K+   A +L ++LK+  
Sbjct: 406 LIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYDVANELFQELKENC 465

Query: 316 KDDE----MAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGAC 371
                     M  HF +            +   ++L   +K +LG  P     + L+   
Sbjct: 466 GCSSARVYAVMIKHFGKC---------GRLNEAINLFNEMK-KLGCTPDVYAYNALMTGM 515

Query: 372 VNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           V A  +  A  +++  E  G   ++ S+  +      +G  K A ++ +KM
Sbjct: 516 VRAERMDEAFSLFRTMEENGCTPDINSHNIILNGLARTGGPKGALEMFTKM 566



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 147/346 (42%), Gaps = 26/346 (7%)

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM-EQANVKPDS 151
           K K  + A S+   +K     PTAS YN+I+    ++   +    +  EM  + +  PD+
Sbjct: 165 KAKMVNRALSVFYQVKGRKCRPTASTYNSIILMLMQEGHHEKVHELYNEMCSEVHCFPDT 224

Query: 152 QTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
            T+S LI      + ++  I+ ++++K  G Q T  ++  L+  Y   G+ E+A  +V +
Sbjct: 225 VTYSALISAFAKLNRDDSAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALGLVKE 284

Query: 209 AE-----IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
                  + V + +E    L+  L   GR  DA + Y+ + + GC  +   +  LI  L 
Sbjct: 285 MRARRCLLTVFTYTE----LIRGLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINILG 340

Query: 264 SEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKF----KDDE 319
               L   I+L +E+      ++    ++ +    K L  A   L +    F    KD  
Sbjct: 341 RSNHLRDAIKLFDEMK----LLNCAPNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDGI 396

Query: 320 MAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKR 379
           +   + +S +      T+   V+  L LL+ + DE G PP       L+     A+    
Sbjct: 397 VPSSFTYSILIDGYCKTN--RVEKALLLLEEM-DEKGFPPCPAAYCSLINTLGVAKRYDV 453

Query: 380 AHLIWKEY-ENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424
           A+ +++E  EN G   +   Y  M K F   G    A  L ++M K
Sbjct: 454 ANELFQELKENCGCS-SARVYAVMIKHFGKCGRLNEAINLFNEMKK 498



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/203 (19%), Positives = 93/203 (45%), Gaps = 3/203 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I PSS +Y  LI   C   +V  AL ++E+M +    P      S+++    +  +++  
Sbjct: 396 IVPSSFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYDVAN 455

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +  +    ++  +  MI    K    + A +L +++K++   P    YNA+M G 
Sbjct: 456 ELFQELKENCGCSSARVYAVMIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGM 515

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
            R + +  A  + + ME+    PD  + + +++        +  ++ + ++K++  +   
Sbjct: 516 VRAERMDEAFSLFRTMEENGCTPDINSHNIILNGLARTGGPKGALEMFTKMKNSTIKPDV 575

Query: 184 YVFMALINAYTTCGEFEKARQVV 206
             F  ++   +  G FE+A +++
Sbjct: 576 VSFNTILGCLSRAGLFEEAAKLM 598


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 106/247 (42%), Gaps = 24/247 (9%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL +  QM Q  + P    + S+L A  +  +    + I+  +    L+   +   S+ +
Sbjct: 254 ALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTA 313

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K      A S  D ++    +P   M+NA+++GY +      A+ + +EM   N++ 
Sbjct: 314 MYAKCGQVMVARSFFDQME----IPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRT 369

Query: 150 DSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK-------YVFMALINAYTTCGEFEKA 202
           DS T    I  C+     +   +  K  G  I K       +V  ALI+ +  CG  + A
Sbjct: 370 DSITVRSAILACAQ----VGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLA 425

Query: 203 RQV---VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALI 259
           R+V    LD ++       V SA++     HGR  DAI ++  +K+AG        + L+
Sbjct: 426 REVFDRTLDKDVV------VWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLL 479

Query: 260 EHLNSEG 266
              N  G
Sbjct: 480 TACNHSG 486



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 89/195 (45%), Gaps = 23/195 (11%)

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
            ++ +  I +   A  + D+  E    P+  ++NAI+ GY        A+ +   M+ + 
Sbjct: 109 FVNASWNIGEIGYARKVFDEFPE----PSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASG 164

Query: 147 VKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK-------YVFMALINAYTTCGEF 199
           V PD  T   ++  CS     +   E  K   GQI +       +V   L+  Y  CG  
Sbjct: 165 VNPDGFTLPCVLKACSG----VPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRV 220

Query: 200 EKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
           E+AR +V +    +  R+ V  ++++S    +G   +A+ ++ ++++   N++P   IAL
Sbjct: 221 EQAR-IVFEG---LDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQR--NVKPDW-IAL 273

Query: 259 IEHLNSEGELNRLIQ 273
           +  L +  ++  L Q
Sbjct: 274 VSVLRAYTDVEDLEQ 288


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 114/256 (44%), Gaps = 11/256 (4%)

Query: 24  LLKVHVALDVVEQ-------MVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHN 76
           L  V V L ++E+       M     +P   + N +LH   +S    LVR+ +  +    
Sbjct: 225 LFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAG 284

Query: 77  LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGAL 136
           + P+  T+  MI    K  D +++  L   ++EM L P    YN+++ GY +   ++   
Sbjct: 285 IAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVA 344

Query: 137 MVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAY 193
            +  EM+     PD  T++ LI+     E +    +Y+ ++K+ G +     +  LI+A+
Sbjct: 345 SLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAF 404

Query: 194 TTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEP 252
              G  + A ++ +D        +E   ++L+ A    G  ++A  +  ++ +AG  L  
Sbjct: 405 CKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNI 464

Query: 253 RAVIALIEHLNSEGEL 268
               AL++ L   G +
Sbjct: 465 VTYTALLDGLCKAGRM 480



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 83/426 (19%), Positives = 179/426 (42%), Gaps = 16/426 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I PS  +Y  +I Y C    +  +  +  QM +  L P   T NS++    +      V 
Sbjct: 285 IAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVA 344

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +      P+  T+  +I+   K +    A+    ++K   L P    Y+ ++  +
Sbjct: 345 SLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAF 404

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH-NC--SNEEDIIKYYEQLKSAGGQITK 183
            ++  +QGA+ +  +M +  + P+  T++ LI  NC   N  +  K    +  AG ++  
Sbjct: 405 CKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNI 464

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             + AL++     G   +A +V     +  +    +V +ALV       R  DA+ + ++
Sbjct: 465 VTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQ 524

Query: 243 IKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFK- 299
           + E  CN++P  ++  ++I    S+ +L     +LEE+       +      +    FK 
Sbjct: 525 MTE--CNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKA 582

Query: 300 -QLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLP 358
            + S A +  ++++D   +  +       +  C+        V++ +D    +   LGL 
Sbjct: 583 GKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGI-----VELAVDYFCRML-SLGLQ 636

Query: 359 PSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKL 418
           P+      L+        ++ A  ++ E +  G+  ++ ++  +    L  GN + A  L
Sbjct: 637 PNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVL 696

Query: 419 LSKMPK 424
           +S+M +
Sbjct: 697 ISRMTE 702



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/273 (18%), Positives = 113/273 (41%), Gaps = 8/273 (2%)

Query: 12  ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPM 71
            +Y  L+   C   ++  A +V   M++  + P+ +   +++H   ++       +I   
Sbjct: 465 VTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQ 524

Query: 72  ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131
           +   N+KP+   + S+I  +   +  +    +L+++K   +     +   I+  YF+   
Sbjct: 525 MTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGK 584

Query: 132 VQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMA 188
              AL   +EM+   V+    T+  LI         E  + Y+ ++ S G Q    V+ +
Sbjct: 585 SSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTS 644

Query: 189 LINAYTTCGEFEKARQVVLDAEIPVKSRS---EVKSALVSALASHGRTSDAIIVYEEIKE 245
           LI+        E A++  L  E+  +  +      +AL+     HG   +A+++   + E
Sbjct: 645 LIDGLCKNNCIESAKK--LFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTE 702

Query: 246 AGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
                +     +L+   +  GEL++  +   E+
Sbjct: 703 LAIEFDLHVYTSLVSGFSQCGELHQARKFFNEM 735



 Score = 43.1 bits (100), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 39/205 (19%), Positives = 85/205 (41%), Gaps = 11/205 (5%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQM----VQGELVPSTETINSILHACEESYEF 62
           I P    Y  +I   C   K+     ++E+M    +    V ST  I++   A + S   
Sbjct: 530 IKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDAL 589

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           N  + +  +     ++    T+  +I    K    + A      +  + L P  ++Y ++
Sbjct: 590 NFFQEMQDV----GVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSL 645

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGG 179
           + G  +   ++ A  +  EM+   + PD   F+ LI       N ++ +    ++     
Sbjct: 646 IDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAI 705

Query: 180 QITKYVFMALINAYTTCGEFEKARQ 204
           +   +V+ +L++ ++ CGE  +AR+
Sbjct: 706 EFDLHVYTSLVSGFSQCGELHQARK 730


>gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400
 gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/275 (20%), Positives = 118/275 (42%), Gaps = 4/275 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  +I   C    V  A  + ++++  EL+P+     +++    ++ E    R
Sbjct: 265 VLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTAR 324

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +    + PN   +  +I  + K  +   A  LL +++ +NL P    Y  ++ G 
Sbjct: 325 SLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGL 384

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CS--NEEDIIKYYEQLKSAGGQITK 183
             +  V  A  + ++M+   + P S T++ LIH  C   N E  +    ++ ++G +   
Sbjct: 385 CIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNI 444

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             F  LI+ Y    + + A  +  +  I  +       +AL+ A        +A+ +Y +
Sbjct: 445 ITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSD 504

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEE 277
           + EAG +        L++    EG L+  I   +E
Sbjct: 505 MLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQE 539



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 91/207 (43%), Gaps = 3/207 (1%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           L ++P   +Y  LI   C   +V  A  + ++M    + PS+ T NS++H   + Y    
Sbjct: 368 LNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQ 427

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
              +   +    ++PN  TF ++I     ++D  +A  L  ++    ++P    Y A++ 
Sbjct: 428 ALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALID 487

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQI 181
            +F++ +++ AL +  +M +A + P+  TF+ L+     E  +   I +Y++        
Sbjct: 488 AHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQENNQQRSCW 547

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLD 208
               F  LI      G   +A +   D
Sbjct: 548 NHVGFTCLIEGLCQNGYILRASRFFSD 574



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 74/360 (20%), Positives = 145/360 (40%), Gaps = 20/360 (5%)

Query: 79  PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMV 138
           P+S+   S+++  V+ + FDS +     +    L+P   +Y  +    F++        +
Sbjct: 162 PDSKACLSILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQGLYSKKEKL 221

Query: 139 LKEMEQANVKPDSQTFS-YLIHNCSNE--EDIIKYYEQLKSAGGQITKYVFMALINAYTT 195
           L EM    +KP+   ++ Y++  C +   E+  K +E +K  G     Y + A+I+ Y  
Sbjct: 222 LDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCK 281

Query: 196 CGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLE 251
            G   +A    +++++   +P      V   LV           A  ++  + + G +  
Sbjct: 282 TGNVRQAYGLYKEILVAELLP---NVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPN 338

Query: 252 PRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL---HCVRFKQLSSATDLL 308
                 LI      G +   + LL E+   +   D     IL    C+   Q++ A  L 
Sbjct: 339 LYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIE-DQVAEANRLF 397

Query: 309 KQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLL 368
           +++K++      A        +C+       +++  LDL   +    G+ P+      L+
Sbjct: 398 QKMKNERIFPSSATYNSLIHGYCK-----EYNMEQALDLCSEMTAS-GVEPNIITFSTLI 451

Query: 369 GACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPH 428
               N RD+K A  ++ E    G+  +V++Y  +  A     N K A +L S M +   H
Sbjct: 452 DGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIH 511



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/203 (19%), Positives = 86/203 (42%), Gaps = 3/203 (1%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
            K  + P+   Y  LI   C    +  A+ ++ +M    L P   T   +++      + 
Sbjct: 331 VKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQV 390

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
               R++  + +  + P+S T+ S+I    K  + + A  L  ++    + P    ++ +
Sbjct: 391 AEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTL 450

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGG 179
           + GY   +D++ A+ +  EM    + PD  T++ LI      +N ++ ++ Y  +  AG 
Sbjct: 451 IDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGI 510

Query: 180 QITKYVFMALINAYTTCGEFEKA 202
               + F  L++ +   G    A
Sbjct: 511 HPNDHTFACLVDGFWKEGRLSVA 533



 Score = 38.5 bits (88), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 36/212 (16%), Positives = 90/212 (42%), Gaps = 4/212 (1%)

Query: 37  MVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKD 96
           M+   LVP       +   C +   ++   ++   +    +KPN   +   I    +   
Sbjct: 190 MISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNK 249

Query: 97  FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSY 156
            + A  + + +K+  ++P    Y+A++ GY +  +V+ A  + KE+  A + P+   F  
Sbjct: 250 MEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGT 309

Query: 157 LIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAE-IP 212
           L+       +++     +  +   G     YV+  LI+ +   G   +A  ++ + E + 
Sbjct: 310 LVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLN 369

Query: 213 VKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +       + L++ L    + ++A  +++++K
Sbjct: 370 LSPDVFTYTILINGLCIEDQVAEANRLFQKMK 401


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 116/258 (44%), Gaps = 10/258 (3%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  ++   C   KV  A +V+E+M    + P+  T  SI+    +    +    ++   
Sbjct: 597 AYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEA 656

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               ++ N   + S+I    K+   D AY +L+++ +  L P    +N++M    + +++
Sbjct: 657 KSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEI 716

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMAL 189
             AL+  + M++    P++ T+S LI+     +   K   ++++++  G       +  +
Sbjct: 717 DEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTM 776

Query: 190 INAYTTCGEFEKARQVV----LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
           I+     G    A  +      +  IP    S   +AL+  +++  R  +A  V+EE + 
Sbjct: 777 ISGLAKVGNITDAYSLFERFKTNGGIP---DSASFNALIEGMSNANRPMEAYQVFEETRL 833

Query: 246 AGCNLEPRAVIALIEHLN 263
            GC L  +  I+L++ LN
Sbjct: 834 RGCRLNVKTCISLLDALN 851



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 86/458 (18%), Positives = 164/458 (35%), Gaps = 78/458 (17%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K +  P+ ++Y  +I   C   +V+ A  + ++M    L P+  ++N ++    ++ +  
Sbjct: 378 KKDAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLE 437

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL---------------- 107
              RI+         PNS T+ S+I    K    D AY L + +                
Sbjct: 438 EAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLI 497

Query: 108 ----------------KEM---NLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
                           KEM      P  ++ N  M   F+  +V+    + ++M+     
Sbjct: 498 RNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFL 557

Query: 149 PDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           PD +++S LIH         +    ++ +   G  +    + A+++     G+ +KA +V
Sbjct: 558 PDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEV 617

Query: 206 VLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
           + + ++  V        ++V  LA   R  +A +++EE K  G  L      +LI+    
Sbjct: 618 LEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGK 677

Query: 265 EGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEY 324
            G ++    +LEE+                    K L+        L D     E     
Sbjct: 678 VGRIDEAYLILEEMMK------------------KGLTPNVYTWNSLMDALVKTE----- 714

Query: 325 HFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIW 384
                          ++   L   Q +K E+   P+      L+      +   +A + W
Sbjct: 715 ---------------EIDEALICFQSMK-EMKCSPNTYTYSILINGLCRVQKYNKAFVFW 758

Query: 385 KEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           +E +  GL  NV++Y  M       GN   A  L  + 
Sbjct: 759 QEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERF 796



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 96/200 (48%), Gaps = 13/200 (6%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y  LI     + ++  A  ++E+M++  L P+  T NS++ A  ++ E +       +IC
Sbjct: 668 YSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEID-----EALIC 722

Query: 74  HHNLK-----PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
             ++K     PN+ T+  +I+   +++ ++ A+    ++++  L+P    Y  +++G  +
Sbjct: 723 FQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAK 782

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY---EQLKSAGGQITKYV 185
             ++  A  + +  +     PDS +F+ LI   SN    ++ Y   E+ +  G ++    
Sbjct: 783 VGNITDAYSLFERFKTNGGIPDSASFNALIEGMSNANRPMEAYQVFEETRLRGCRLNVKT 842

Query: 186 FMALINAYTTCGEFEKARQV 205
            ++L++A       E+A  V
Sbjct: 843 CISLLDALNKTECLEQAAIV 862



 Score = 46.2 bits (108), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 48/259 (18%), Positives = 109/259 (42%), Gaps = 7/259 (2%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL +V+++    L P     N  +    ++   ++  + +  +  H L+P+  ++ SM+ 
Sbjct: 230 ALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVW 289

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K      A  L   ++    +P A  YN ++ GY   +    A  +L+ + +    P
Sbjct: 290 VLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIP 349

Query: 150 DSQTFSYLIHNCSN----EEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
              +F+ ++         +E +  +    K A   I+ Y    +I+     G   +A ++
Sbjct: 350 SVVSFNSILTCLGKKRKVDEALTLFDVMKKDAKPNISTYNI--IIDMLCMAGRVNEAYKI 407

Query: 206 VLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
             + E+     + +  + +V  L    +  +A  ++E   E GCN       +LI+ L  
Sbjct: 408 RDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGK 467

Query: 265 EGELNRLIQLLEEVHDPDY 283
           +G+++   +L E++ D  +
Sbjct: 468 KGKIDDAYRLFEKMLDAGH 486



 Score = 43.5 bits (101), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 58/122 (47%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  +TP+  ++  L+       ++  AL   + M + +  P+T T + +++      ++N
Sbjct: 693 KKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYN 752

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
                +  +    L PN  T+ +MIS   K+ +   AYSL +  K    +P ++ +NA++
Sbjct: 753 KAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERFKTNGGIPDSASFNALI 812

Query: 124 AG 125
            G
Sbjct: 813 EG 814


>gi|28393724|gb|AAO42273.1| unknown protein [Arabidopsis thaliana]
          Length = 642

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 90/408 (22%), Positives = 171/408 (41%), Gaps = 28/408 (6%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHH-NLKPNSETFR 85
           V  AL V  Q    +  P++ T NS++    +  +   V  +Y  +C+  +  P++ T+ 
Sbjct: 178 VSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYS 237

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           ++IS   K+   DSA  L D++K+  + PT  +Y  ++  YF+   V+ AL + +EM++A
Sbjct: 238 ALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRA 297

Query: 146 NVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA--GGQITKYVFM-ALINAYTTCGEFEKA 202
              P   T++ LI        + + Y   K     G     VF+  L+N     G  E+ 
Sbjct: 298 GCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEEL 357

Query: 203 RQVVLDAEI-----PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIA 257
             V  +  +      V S + V  AL     S    S+    ++++K    +        
Sbjct: 358 TNVFSEMGMWRCTPTVVSYNTVIKAL---FESKAHVSEVSSWFDKMKADSVSPSEFTYSI 414

Query: 258 LIEHLNSEGELNRLIQLLEEVHDPDY--WMDGCCRLILHCVRFKQLSSATDLLKQLKDKF 315
           LI+       + + + LLEE+ +  +       C LI    + K+  +A +L K+LK+ F
Sbjct: 415 LIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAADELFKELKENF 474

Query: 316 KDDE----MAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGAC 371
            +        M  HF +            +   +DL   +K++ G  P     + L+   
Sbjct: 475 GNVSSRVYAVMIKHFGKC---------GKLSEAVDLFNEMKNQ-GSGPDVYAYNALMSGM 524

Query: 372 VNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLL 419
           V A  +  A+ + ++ E  G   ++ S+  +   F  +G  + A ++ 
Sbjct: 525 VKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMF 572



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 73/400 (18%), Positives = 163/400 (40%), Gaps = 48/400 (12%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+   Y  L+     + KV  ALD+ E+M +    P+  T   ++    ++   +   
Sbjct: 264 MQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAY 323

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
             Y  +    L P+     +++++  K+   +   ++  ++      PT   YN ++   
Sbjct: 324 GFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKAL 383

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVF 186
           F  K                               ++  ++  +++++K+     +++ +
Sbjct: 384 FESK-------------------------------AHVSEVSSWFDKMKADSVSPSEFTY 412

Query: 187 MALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSA---LVSALASHGRTSDAIIVYEEI 243
             LI+ Y      EKA  ++L  E+  K      +A   L++AL    R   A  +++E+
Sbjct: 413 SILIDGYCKTNRVEKA--LLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAADELFKEL 470

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYWMDGCCRLILHCVRFK 299
           KE   N+  R    +I+H    G+L+  + L  E+ +    PD +      L+   V+  
Sbjct: 471 KENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNA--LMSGMVKAG 528

Query: 300 QLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPP 359
            ++ A  LL+++++     ++      + I    A T  P  +  +++ + IK   G+ P
Sbjct: 529 MINEANSLLRKMEENGCRADIN---SHNIILNGFARTGVP--RRAIEMFETIKHS-GIKP 582

Query: 360 SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSY 399
                + LLG   +A   + A  + +E ++ G  Y+ ++Y
Sbjct: 583 DGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITY 622


>gi|302816960|ref|XP_002990157.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
 gi|300142012|gb|EFJ08717.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
          Length = 760

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/261 (21%), Positives = 122/261 (46%), Gaps = 13/261 (4%)

Query: 29  VALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
            AL +  +M++  + P   T N+++ A   +  +    RI+  +    +  +  T+ ++I
Sbjct: 208 TALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLI 267

Query: 89  SLNVKIKDFDSAYSLLDDL-KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANV 147
           +   +        +L++ + K   + P+   Y+ ++ GY +      A+ + +EM   NV
Sbjct: 268 ATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNV 327

Query: 148 KPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204
           +PD   ++ ++       N ++       ++ AG       + AL+++Y   G+F +A  
Sbjct: 328 EPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMS 387

Query: 205 VVLDAEIPVKSRSE---VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALI 259
           ++   E+  +  S      SAL+ A   HG   DA+ +++++K+AG  L+P  V+   L+
Sbjct: 388 LL--EEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAG--LQPDVVLYSTLV 443

Query: 260 EHLNSEGELNRLIQLLEEVHD 280
           +     G  +  + LLEE+ D
Sbjct: 444 DGCCKNGSPDEALALLEEMAD 464



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 97/200 (48%), Gaps = 4/200 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELV-PSTETINSILHACEESYEFNLV 65
           I     +Y  LI   C   ++H+   ++E M +   + PS  T ++++    +    +  
Sbjct: 256 IARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEA 315

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             ++  + + N++P+   + +M+ ++ ++ +FD A+S+   ++E         YNA++  
Sbjct: 316 IALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDS 375

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSN--EEDIIKYYEQLKSAGGQIT 182
           Y ++   + A+ +L+EM+Q    P+  T+S LI   C +    D +  ++ +K AG Q  
Sbjct: 376 YGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPD 435

Query: 183 KYVFMALINAYTTCGEFEKA 202
             ++  L++     G  ++A
Sbjct: 436 VVLYSTLVDGCCKNGSPDEA 455



 Score = 43.1 bits (100), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 30/152 (19%), Positives = 61/152 (40%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P    Y  ++     L     A  +   M +        T N++L +  +  +F    
Sbjct: 327 VEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAM 386

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +      PN  T+ ++I    K      A +L  D+K+  L P   +Y+ ++ G 
Sbjct: 387 SLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGC 446

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            +      AL +L+EM    ++P+  T++ L+
Sbjct: 447 CKNGSPDEALALLEEMADNGIRPNVITYNSLL 478


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 128/286 (44%), Gaps = 11/286 (3%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQ---GELVPSTETINSILHACEESY 60
           +L   P+  SY  L+   CD  +   AL+++  M     G   P   +  ++++   +  
Sbjct: 151 ELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEG 210

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           + +     Y  +    + P+  T+ S+I+   K +  D A  +L+ + +  +MP    YN
Sbjct: 211 DSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYN 270

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI-HNCSNEE--DIIKYYEQLKSA 177
           +I+ GY      + A+  LK+M    V+PD  T+S L+ + C N    +  K ++ +   
Sbjct: 271 SILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKR 330

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDA 236
           G +     +  L+  Y T G   +   ++ L     +     V S L+ A A+ G+   A
Sbjct: 331 GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQA 390

Query: 237 IIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHD 280
           ++V+ ++++ G N  P AV   A+I  L   G +   +   E++ D
Sbjct: 391 MLVFSKMRQQGLN--PNAVTYGAVIGILCKSGRVEDAMLYFEQMID 434



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 62/319 (19%), Positives = 125/319 (39%), Gaps = 39/319 (12%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA----------- 55
           + P++ +Y  +I   C   +V  A+   EQM+   L P     NS++H            
Sbjct: 402 LNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAE 461

Query: 56  -----------CEESYEFNLV-------------RRIYPMICHHNLKPNSETFRSMISLN 91
                      C  +  FN +              +++ ++    +KPN  T+ ++I+  
Sbjct: 462 ELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGY 521

Query: 92  VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151
                 D A  LL  +  + L P    Y+ ++ GY +   ++ AL++ KEME + V PD 
Sbjct: 522 CLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDI 581

Query: 152 QTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
            T++ ++             + Y ++  +G QI    +  +++        + A Q+  +
Sbjct: 582 ITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQN 641

Query: 209 -AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
              + +K  +   + ++ AL   GR  +A  ++      G          + E++  +G 
Sbjct: 642 LCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGL 701

Query: 268 LNRLIQLLEEVHDPDYWMD 286
           L  L QL   + D    +D
Sbjct: 702 LEELDQLFLSMEDNGCTVD 720



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/280 (17%), Positives = 106/280 (37%), Gaps = 39/280 (13%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  L+ Y C   +   A  + + M +  L P   T  ++L           + 
Sbjct: 297 VEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 356

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +  ++  + + P+   F  +I         D A  +   +++  L P A  Y A++   
Sbjct: 357 GLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGIL 416

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN----------------------CSN- 163
            +   V+ A++  ++M    + P +  ++ LIH                       C N 
Sbjct: 417 CKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNT 476

Query: 164 ------------EEDII---KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
                       E  +I   K +E +   G +     +  LIN Y   G+ ++A +++  
Sbjct: 477 IFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSG 536

Query: 209 -AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
              + +K  +   S L++      R  DA+++++E++ +G
Sbjct: 537 MVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSG 576


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 106/231 (45%), Gaps = 17/231 (7%)

Query: 34  VEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVK 93
            E + +   VP   T  S+L  C    EF + + ++  +  + L  +     +++++   
Sbjct: 67  TEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAA 126

Query: 94  IKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQT 153
             D  SA  L + +   N +   SM    ++GY +      AL++ K+ME+    PD  T
Sbjct: 127 CGDLKSARFLFERMGHRNKVVWTSM----ISGYMKNHCPNEALLLYKKMEEDGFSPDEVT 182

Query: 154 FSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV---VL 207
            + L+  C+  +D+   +K +  ++    +I   +  AL+N Y  CG+ + ARQV   + 
Sbjct: 183 MATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLS 242

Query: 208 DAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
           D ++         SAL+     + R+++A+ ++ E+   G N+ P  V  L
Sbjct: 243 DKDV------YAWSALIFGYVKNNRSTEALQLFREVA-GGSNMRPNEVTIL 286



 Score = 42.4 bits (98), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 47/229 (20%), Positives = 98/229 (42%), Gaps = 17/229 (7%)

Query: 30  ALDVVEQMVQG-ELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
           AL +  ++  G  + P+  TI +++ AC +  +    R ++  I       +     S+I
Sbjct: 265 ALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLI 324

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI-MAGYFRKKDVQGALMVLKEMEQANV 147
            +  K  D D+A  + D +   +L+   SM N   + G  R+     AL   + M+  ++
Sbjct: 325 DMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGRE-----ALAQFRLMQTTDL 379

Query: 148 KPDSQTFSYLIHNCSN----EEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203
           +PD  TF  ++  CS+    +E    +YE     G ++    +  +++     G   +AR
Sbjct: 380 QPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAR 439

Query: 204 QVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP 252
           + +    +P++    +  +++ A     R  + + + EE       LEP
Sbjct: 440 EFI--RVMPLQPDGAIWGSMLGAC----RVYNNLELGEEAARFLLKLEP 482


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 60/281 (21%), Positives = 128/281 (45%), Gaps = 6/281 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   ++  LI   C   KV  A  ++E M+Q  +VP+  T NS++       + N  R
Sbjct: 303 VQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSAR 362

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +    L+P+  ++ ++I+   K      A +L +++ ++   P  + Y  ++ G 
Sbjct: 363 ELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGL 422

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITK 183
           F+K  V  A  +   M+   V  +SQ +   +   C N+   + ++ + +LKS   ++  
Sbjct: 423 FQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNI 482

Query: 184 YVFMALINAYTTCGEFEKARQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
             +  LI+     G+ E A ++   L  E  ++      + ++      G+  +A I++E
Sbjct: 483 ENYSCLIDGLCKAGKLETAWELFEKLSQE-GLQPDVVTYNIMIHGFCKVGQVDNANILFE 541

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPD 282
           +++E GC  +  A   L+       +L  +I+LL ++   D
Sbjct: 542 KMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKD 582



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 84/439 (19%), Positives = 171/439 (38%), Gaps = 61/439 (13%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           KL  TP++ +Y  LI   C    V++AL + ++M+                   ++ ++ 
Sbjct: 189 KLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLN------------------DASQYG 230

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
           +           N KP   T+  +I    K+   D A  L +++K   ++P    Y+ ++
Sbjct: 231 V-----------NCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLI 279

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQ 180
            G+        +  +  EM    V+PD  TFS LI     E  +    K  E +   G  
Sbjct: 280 HGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIV 339

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIV 239
                + +LI+ +   G+   AR++ L          E+  + L++      +  +A+ +
Sbjct: 340 PNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNL 399

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY---------WMDGCCR 290
           Y E+ + G +        L++ L  +G++    +L   +              ++DG C 
Sbjct: 400 YNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLC- 458

Query: 291 LILHCVRFKQLSSATDLLKQLKD-KFKDDEMAMEYHFSEI--FCQIATTDPPDVQIGLDL 347
                 +   L  A +L  +LK   FK   + +E +   I   C+        ++   +L
Sbjct: 459 ------KNDCLFEAMELFNELKSYNFK---LNIENYSCLIDGLCKAG-----KLETAWEL 504

Query: 348 LQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFL 407
            + +  E GL P     + ++        +  A++++++ E  G   ++++Y  +   F 
Sbjct: 505 FEKLSQE-GLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFC 563

Query: 408 ASGNRKSASKLLSKMPKDD 426
                +   KLL KM + D
Sbjct: 564 EGNKLEEVIKLLHKMVQKD 582



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/107 (20%), Positives = 51/107 (47%)

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           ++  +    L+P+  T+  MI    K+   D+A  L + ++E    P    YN ++ G+ 
Sbjct: 504 LFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFC 563

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQL 174
               ++  + +L +M Q +V P++ + + ++     +E   K+ + L
Sbjct: 564 EGNKLEEVIKLLHKMVQKDVSPNAASCTIVVDMLCKDEKYKKFVDLL 610


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 103/222 (46%), Gaps = 17/222 (7%)

Query: 43  VPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYS 102
           VP   T  S+L  C    EF + + ++  +  + L  +     +++++     D  SA  
Sbjct: 76  VPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARF 135

Query: 103 LLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS 162
           L + +   N +   SM    ++GY +      AL++ K+ME+    PD  T + L+  C+
Sbjct: 136 LFERMGHRNKVVWTSM----ISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACA 191

Query: 163 NEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV---VLDAEIPVKSR 216
             +D+   +K +  ++    +I   +  AL+N Y  CG+ + ARQV   + D ++     
Sbjct: 192 ELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDV----- 246

Query: 217 SEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
               SAL+     + R+++A+ ++ E+   G N+ P  V  L
Sbjct: 247 -YAWSALIFGYVKNNRSTEALQLFREVA-GGSNMRPNEVTIL 286



 Score = 38.9 bits (89), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 64/134 (47%), Gaps = 8/134 (5%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
              P+  T  +++S   ++KD      L   ++EM++   A + +A++  Y +  D++ A
Sbjct: 175 GFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTA 234

Query: 136 LMVLKEMEQANVKPDSQ-TFSYLIHNCSNEEDIIKYYEQLKSAGG---QITKYVFMALIN 191
             V  ++   +V   S   F Y+ +N S E   ++ + ++  AGG   +  +   +A+I+
Sbjct: 235 RQVFDQLSDKDVYAWSALIFGYVKNNRSTEA--LQLFREV--AGGSNMRPNEVTILAVIS 290

Query: 192 AYTTCGEFEKARQV 205
           A    G+ E  R V
Sbjct: 291 ACAQLGDLETGRWV 304


>gi|410109955|gb|AFV61057.1| pentatricopeptide repeat-containing protein 11, partial [Phyla
           nodiflora]
          Length = 431

 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 117/278 (42%), Gaps = 33/278 (11%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYE 61
            K  + PS  SY  L+     L  +     +   M    + P   T + +++  C+ES +
Sbjct: 169 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVHPDVYTYSVLINGLCKES-K 227

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
            +   +++  +    L PNS TF ++I  + K    D A  +   +   +L+P    YNA
Sbjct: 228 MDDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNGWVDLAMEIYKQMLSQSLLPDLVTYNA 287

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQI 181
           ++ G  +K D++ A  ++ EM    +KPD  T++ LI  C  E D+   +E         
Sbjct: 288 LIYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTTLIDGCCKEGDLDTAFEH-------- 339

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
                                R++++   I +   +   +AL+S L   GR+ DA  +  
Sbjct: 340 ---------------------RKMMIQENIRLDDVA--YTALISGLCQEGRSVDAEKMLR 376

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279
           E+   G   + R    +I     +G++ +  +LL+E+ 
Sbjct: 377 EMLSVGLKPDTRTYTMIINEFCKKGDVWKGSKLLKEMQ 414



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 97/219 (44%), Gaps = 8/219 (3%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           MHA   + P   +Y  LI   C   K+  A  + ++M++  LVP++ T  +++    ++ 
Sbjct: 203 MHAS-GVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNG 261

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
             +L   IY  +   +L P+  T+ ++I    K  D   A+ L+D++    L P    Y 
Sbjct: 262 WVDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYT 321

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE---DIIKYYEQLKSA 177
            ++ G  ++ D+  A    K M Q N++ D   ++ LI     E    D  K   ++ S 
Sbjct: 322 TLIDGCCKEGDLDTAFEHRKMMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 381

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVV----LDAEIP 212
           G +     +  +IN +   G+  K  +++     D  +P
Sbjct: 382 GLKPDTRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVP 420



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 103/263 (39%), Gaps = 10/263 (3%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           +  LIT   +L  +  A+D      + +     +T   +L    +   F LV   Y  I 
Sbjct: 75  FSGLITAYLELGFLRDAIDCYRLTREHKFCVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 134

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
                 +   F  ++    K  D   A S+ D + +  L P+   YN +M GY R  D+ 
Sbjct: 135 ECGYPASLYFFNILMHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALI 190
               +   M  + V PD  T+S LI+    E   +D  K ++++   G       F  LI
Sbjct: 195 EGFRLKSAMHASGVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLI 254

Query: 191 NAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA 246
           + +   G  + A    +Q++  + +P        +AL+  L   G    A  + +E+   
Sbjct: 255 DGHCKNGWVDLAMEIYKQMLSQSLLP---DLVTYNALIYGLCKKGDLKQAHDLIDEMSMX 311

Query: 247 GCNLEPRAVIALIEHLNSEGELN 269
           G   +      LI+    EG+L+
Sbjct: 312 GLKPDKITYTTLIDGCCKEGDLD 334


>gi|224113413|ref|XP_002316488.1| predicted protein [Populus trichocarpa]
 gi|222865528|gb|EEF02659.1| predicted protein [Populus trichocarpa]
          Length = 941

 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 73/373 (19%), Positives = 161/373 (43%), Gaps = 43/373 (11%)

Query: 31  LDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL 90
           L V +++ +    PS  T   +++   +  + +    +  M+    +K N +T+  +I+ 
Sbjct: 454 LIVFKRLKECGFAPSVITYGCLINMYTKIGKVSKALEVSKMMKSVGIKHNMKTYSMLING 513

Query: 91  NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD 150
            +K+KD+ +A+++ +D+ +  L P   +YN I+  +    ++  A+ ++KEM++   +P 
Sbjct: 514 FLKLKDWTNAFAVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPT 573

Query: 151 SQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVL 207
           S+TF  +IH  +   ++   ++ ++ ++ +G   T + F AL+       + EKA +++ 
Sbjct: 574 SRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRKMEKAVEILD 633

Query: 208 DAEIPVKSRSE-VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
           +  +   S  E   + ++   A+ G T  A   + +++  G  L+     AL++     G
Sbjct: 634 EMALAGVSPDEHTYTTIMHGYAALGDTGKAFEYFTKMRNEGLQLDVFTYEALLKACCKSG 693

Query: 267 ELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHF 326
            +   + +  E++                   +++   T +   L D +           
Sbjct: 694 RMQSALAVTREMNA------------------QKIPRNTFVYNILIDGW----------- 724

Query: 327 SEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKE 386
                        D+    DL+Q +  E G+ P        + AC  A D+ RA    +E
Sbjct: 725 ---------ARRGDIWEAADLMQQMNQE-GVQPDIHTYTSFINACCKAGDMLRATKTMEE 774

Query: 387 YENAGLPYNVLSY 399
            E AG+  NV +Y
Sbjct: 775 MEAAGVKPNVKTY 787



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 97/491 (19%), Positives = 188/491 (38%), Gaps = 83/491 (16%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA------------C 56
           PS   +  ++ Y      +H A    E M    + PS+    S++HA            C
Sbjct: 292 PSRREFGLMVGYYARRGDMHRARQTFESMRARGIDPSSHVYTSLIHAYAVGRDMEEALSC 351

Query: 57  -----EESYEFNLVRRIYPMIC----------------------HHNLKPNSETFRSMIS 89
                EE  E +LV   Y ++                       H NL  N+  + ++I 
Sbjct: 352 VRKMNEEGIEMSLV--TYSIVVGGFAKFGNAEAADCWFKKAKERHTNL--NAYIYGNIIY 407

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              +  + D A +L+ +++E  +     +Y+ +M GY   ++ +  L+V K +++    P
Sbjct: 408 AYCQACNMDRAEALVREMEEEGIDAPLDIYHTMMDGYTMIRNEEKCLIVFKRLKECGFAP 467

Query: 150 DSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
              T+  LI+  +    + K  E    +KS G +     +  LIN +    ++  A  V 
Sbjct: 468 SVITYGCLINMYTKIGKVSKALEVSKMMKSVGIKHNMKTYSMLINGFLKLKDWTNAFAVF 527

Query: 207 LDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
            D  +  +K    + + ++ A    G    AI + +E+++  C    R  + +I      
Sbjct: 528 EDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPIIHGFARA 587

Query: 266 GELNRLIQLLEEVHDPDYWMDGCC-------RLILHCVRFKQLSSATDLLKQLKDKFKDD 318
           GE+ R +++ + +        GC         L+L  V  +++  A ++L         D
Sbjct: 588 GEMRRALEIFDMMRR-----SGCIPTVHTFNALVLGLVEKRKMEKAVEIL---------D 633

Query: 319 EMAM------EYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACV 372
           EMA+      E+ ++ I    A     D     +    +++E GL       + LL AC 
Sbjct: 634 EMALAGVSPDEHTYTTIMHGYAALG--DTGKAFEYFTKMRNE-GLQLDVFTYEALLKACC 690

Query: 373 NARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM------PKDD 426
            +  ++ A  + +E     +P N   Y  +   +   G+   A+ L+ +M      P   
Sbjct: 691 KSGRMQSALAVTREMNAQKIPRNTFVYNILIDGWARRGDIWEAADLMQQMNQEGVQPDIH 750

Query: 427 PHVRFVIQACK 437
            +  F+   CK
Sbjct: 751 TYTSFINACCK 761



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/280 (20%), Positives = 108/280 (38%), Gaps = 39/280 (13%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P    Y  +I   C +  +  A+ +V++M +    P++ T   I+H    + E     
Sbjct: 535 LKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPIIHGFARAGEMRRAL 594

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            I+ M+      P   TF +++   V+ +  + A  +LD++    + P    Y  IM GY
Sbjct: 595 EIFDMMRRSGCIPTVHTFNALVLGLVEKRKMEKAVEILDEMALAGVSPDEHTYTTIMHGY 654

Query: 127 FRKKD-----------------------------------VQGALMVLKEMEQANVKPDS 151
               D                                   +Q AL V +EM    +  ++
Sbjct: 655 AALGDTGKAFEYFTKMRNEGLQLDVFTYEALLKACCKSGRMQSALAVTREMNAQKIPRNT 714

Query: 152 QTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
             ++ LI   +   DI +     +Q+   G Q   + + + INA    G+  +A + + +
Sbjct: 715 FVYNILIDGWARRGDIWEAADLMQQMNQEGVQPDIHTYTSFINACCKAGDMLRATKTMEE 774

Query: 209 AEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
            E   VK   +  + L+   A+      A+  +EE+K AG
Sbjct: 775 MEAAGVKPNVKTYTTLIHGWANASLPEKALSCFEELKLAG 814


>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 730

 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 93/203 (45%), Gaps = 4/203 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y +L++        + A ++ + MV   + P   T  S+L A   + +      I
Sbjct: 256 PNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEI 315

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           Y  +   N  PNS TF ++I ++ K K+F     + +D++   + P    +N+++  + +
Sbjct: 316 YNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGK 375

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYV 185
                  L V + M++A  +PD  TF+ LI     C + +  +  Y+ +  AG       
Sbjct: 376 NGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLAT 435

Query: 186 FMALINAYTTCGEFEKARQVVLD 208
           F  L+ A    G +E A +++LD
Sbjct: 436 FNTLLAALAREGRWEHA-ELILD 457



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/313 (20%), Positives = 123/313 (39%), Gaps = 41/313 (13%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P   +Y   IT          A ++  QM      P   T N++L    ++  +N   
Sbjct: 184 IQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNALLDVYGKAGWYNEAA 243

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +      PN  T+  ++S   +    ++A  + D +    + P    Y ++++ Y
Sbjct: 244 NVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAY 303

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI-------------------HNCSNEEDI 167
            R   V+ A+ +  +M  +N  P+S TF+ LI                     C  E DI
Sbjct: 304 SRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDI 363

Query: 168 I-------------------KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
           +                   K +  +K AG +  K  F  LI AY  CG  ++A   + D
Sbjct: 364 VTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALS-IYD 422

Query: 209 AEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
             +      ++ +   L++ALA  GR   A ++ +E+  +       A  +++    + G
Sbjct: 423 GMLQAGCTPDLATFNTLLAALAREGRWEHAELILDELNRSSYKPNDIAYASMLHAYANGG 482

Query: 267 ELNRLIQLLEEVH 279
           EL +L ++++ +H
Sbjct: 483 ELEKLKEMVDTLH 495



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 67/318 (21%), Positives = 133/318 (41%), Gaps = 22/318 (6%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           TP+S ++  LI            + + E M    + P   T NS+L A  ++  ++ V +
Sbjct: 325 TPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLK 384

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           ++  +     +P+  TF  +I    +    D A S+ D + +    P  + +N ++A   
Sbjct: 385 VFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALA 444

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKY 184
           R+   + A ++L E+ +++ KP+   ++ ++H  +N  ++ K  E    L +     TK 
Sbjct: 445 REGRWEHAELILDELNRSSYKPNDIAYASMLHAYANGGELEKLKEMVDTLHTIYVPFTKI 504

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVK-----SRSEVKSALVSALASHGRTSDAIIV 239
           +    +  Y+ C   ++A     DA + ++     S +   +A++S     G    A   
Sbjct: 505 LLKTFVLVYSKCSLVDEAE----DAFLAMRHHGYLSDTSTFNAMISMYGKKGMMDKATDT 560

Query: 240 YEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEV----HDPDYWMDGCCRLIL 293
           +  ++  G  LEP  V    L+     EG   +    L E       PD  +     +I 
Sbjct: 561 FALLRSTG--LEPDVVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPD--LVSYNTVIF 616

Query: 294 HCVRFKQLSSATDLLKQL 311
              +  QLSSAT +  ++
Sbjct: 617 SYSKHGQLSSATRIFHEM 634



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 83/428 (19%), Positives = 164/428 (38%), Gaps = 57/428 (13%)

Query: 30  ALDVVEQMVQG-ELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
           AL+V   M Q     P   TI  +L       +   V R++  +       +   + S+I
Sbjct: 65  ALEVFNWMRQSVNFRPDGVTIAVMLRILGRESQLTTVSRLFKSLREEGYPLDVYAYTSLI 124

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK-KDVQGALMVLKEMEQANV 147
           S   + + F  A    + +KE    P+   YN I+  Y +K +  +  L + +EM+   +
Sbjct: 125 SALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGRSWENILELFEEMKAQGI 184

Query: 148 KPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204
           +PD  T++  I  C++    E+  + + Q+KS+     +  + AL++ Y   G + +A  
Sbjct: 185 QPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNALLDVYGKAGWYNEAAN 244

Query: 205 VVLDAE----IP-----------------VKSRSEVK---------------SALVSALA 228
           V+ + E    +P                   + +E+K               ++L+SA +
Sbjct: 245 VLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYS 304

Query: 229 SHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDY- 283
             G+   A+ +Y +++ + C        ALI         + ++ + E++     +PD  
Sbjct: 305 RAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIV 364

Query: 284 -WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQ 342
            W      L+    +    S    + + +K    + + A      E + +  ++D   + 
Sbjct: 365 TWNS----LLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQA-LS 419

Query: 343 IGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWM 402
           I   +LQ      G  P     + LL A       + A LI  E   +    N ++Y  M
Sbjct: 420 IYDGMLQ-----AGCTPDLATFNTLLAALAREGRWEHAELILDELNRSSYKPNDIAYASM 474

Query: 403 YKAFLASG 410
             A+   G
Sbjct: 475 LHAYANGG 482



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 33/193 (17%), Positives = 77/193 (39%), Gaps = 5/193 (2%)

Query: 17  LITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHN 76
           L+   C L  V  A D    M     +  T T N+++    +    +     + ++    
Sbjct: 511 LVYSKCSL--VDEAEDAFLAMRHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRSTG 568

Query: 77  LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGAL 136
           L+P+  T+  ++ +  +   +    + L +       P    YN ++  Y +   +  A 
Sbjct: 569 LEPDVVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPDLVSYNTVIFSYSKHGQLSSAT 628

Query: 137 MVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAY 193
            +  EM    ++PDS T++  +    N     + +   + +   G +  +  +  L++AY
Sbjct: 629 RIFHEMVSNGIQPDSFTYNTFVGCYVNGGMFPEALSVVKHMHKTGCKPDEVTYRTLVDAY 688

Query: 194 TTCGEFEKARQVV 206
              G+FE+  +++
Sbjct: 689 CKIGKFEEVERIL 701


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/280 (20%), Positives = 121/280 (43%), Gaps = 8/280 (2%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           ++ + P+  +Y  L+   C L     AL + + M+   LVP   T   ++    +  E  
Sbjct: 245 EVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMK 304

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             R ++  +   ++ PN   + S+I    K+ D   A +L  +L+   + P    Y+ ++
Sbjct: 305 AARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILI 364

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQ 180
            G       + A  + ++M +  +  +S T++ LI  C  E  + K  E   Q+   G +
Sbjct: 365 RGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVE 424

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE---VKSALVSALASHGRTSDAI 237
                F  LI+ Y      + A  +   +E+ +KS S      +A++     +G   +A+
Sbjct: 425 PNVITFSTLIDGYCKIRNLQAAMGIY--SEMVIKSLSPDVVTYTAMIDGHCKYGSMKEAL 482

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEE 277
            +Y ++ + G       +  L++ L  +G+++  ++L  E
Sbjct: 483 KLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELFTE 522



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/257 (20%), Positives = 115/257 (44%), Gaps = 22/257 (8%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           + E++P   +Y  LI   C + +   A ++ E+M +  ++ ++ T NS++  C +  + +
Sbjct: 350 RFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMD 409

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               I   +  + ++PN  TF ++I    KI++  +A  +  ++   +L P    Y A++
Sbjct: 410 KALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMI 469

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK 183
            G+ +   ++ AL +  +M    + P+  T S L+     +              G+I+ 
Sbjct: 470 DGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKD--------------GKISD 515

Query: 184 YVFMALINAYTTCGEFEKAR-QVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
                 +  +T   EF+  R  V      P  +     +AL+  L   G+ S A+ ++ +
Sbjct: 516 -----ALELFTEKIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSKAVKLFSD 570

Query: 243 IKEAGCNLEPRAVIALI 259
           ++  G  L+P  VI ++
Sbjct: 571 MRRYG--LQPDEVIYVV 585



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/290 (21%), Positives = 125/290 (43%), Gaps = 16/290 (5%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y +LI   C +  V  AL +  + V   L  + +  N +L+   ++  F L+ RIY  + 
Sbjct: 118 YGELIIVLCKMELVEEALSMYHK-VGAAL--TIQACNVLLYVLVKTGRFELLWRIYEEMI 174

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
            + L P+  TF ++I    +  D   A  + D+++   ++PT  +Y  ++ G      ++
Sbjct: 175 SNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIE 234

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALI 190
            A  + + M +  V P+  T++ L+      +N +  ++ Y+ +   G       F  LI
Sbjct: 235 EAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILI 294

Query: 191 NAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
           +     GE + AR + ++  +  V     V ++L+ A    G  S+A+ ++ E++    +
Sbjct: 295 DGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVS 354

Query: 250 LEPRAVIALIEHLNSEGELNRLIQLLEEVHDP---------DYWMDGCCR 290
            +      LI  L S         + E++            +  +DGCC+
Sbjct: 355 PDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCK 404



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 130/288 (45%), Gaps = 45/288 (15%)

Query: 33  VVEQMVQGELVPSTETINSILHAC---------EESYEFNLVRRIYPMICHHNLKPNSET 83
           + E+M+   L PS  T  +++  C         +E ++   V+ I P +  + +      
Sbjct: 169 IYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTI-----L 223

Query: 84  FRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME 143
            R + S N KI++ +S +     ++E+ + P    YN +M GY +  + + AL + ++M 
Sbjct: 224 IRGLCSDN-KIEEAESMHR---AMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDML 279

Query: 144 QANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGG---QITKY-------VFMALINAY 193
              + PD  TF  LI       D +  + ++K+A      + K+       V+ +LI+AY
Sbjct: 280 GEGLVPDVVTFGILI-------DGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAY 332

Query: 194 TTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP 252
              G+  +A  + L+ E   V       S L+  L S  RT +A  ++E++ + G     
Sbjct: 333 CKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANS 392

Query: 253 RAVIALIEHLNSEGELNRLI----QLLEEVHDPDY-----WMDGCCRL 291
               +LI+    EG++++ +    Q+ E   +P+       +DG C++
Sbjct: 393 VTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKI 440


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 100/458 (21%), Positives = 186/458 (40%), Gaps = 59/458 (12%)

Query: 1   MHAKLE---ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACE 57
           +H K+E   I  +  S+  LI   C   K+  AL    ++ +    PS  T +++LH   
Sbjct: 98  LHRKMEMRRIPCNIYSFTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLC 157

Query: 58  ESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTAS 117
                +     +  IC    KPN   F ++++   +      A +LLD + E  L P   
Sbjct: 158 VEDRVSEALHFFHQIC----KPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQI 213

Query: 118 MYNAIMAGYFRKKDVQGALMVLKEMEQ-ANVKPDSQTFSYLIHNC---SNEEDIIKYYEQ 173
            Y  I+ G  +  D   AL +L++ME+ + +KP+   +S +I        + D    + +
Sbjct: 214 TYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSE 273

Query: 174 LKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGR 232
           ++  G     + +  +IN + + G + +A++++ +  E  +       S L++AL   G+
Sbjct: 274 MQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGK 333

Query: 233 TSDAIIVYEEIKEAGCNLEPRAVI-------ALIEHLNSEGELN---RLIQLL-EEVHDP 281
             +A  +Y E       + PR +I       ++I+  + +  L+   R+  L+  +   P
Sbjct: 334 FFEAEELYNE-------MLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSP 386

Query: 282 DY-----WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATT 336
           D       +DG C         K++     LL ++  +               FCQ+   
Sbjct: 387 DVITFSILIDGYCGA-------KRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLG-- 437

Query: 337 DPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYE------NA 390
              ++   LDLLQ +      P    C   L G C N + LK A  ++K  +      +A
Sbjct: 438 ---NLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGK-LKDALEMFKVMQKSKMDLDA 493

Query: 391 GLPYN-----VLSYLWMYKAFLASGNRKSASKLLSKMP 423
             P+N     V +Y  +    +  G    A +L  +MP
Sbjct: 494 SHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMP 531



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/278 (19%), Positives = 116/278 (41%), Gaps = 30/278 (10%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           ++  +  ++ +Y  LI   C L  ++ ALD++++M+   + P+  T N++L         
Sbjct: 415 SRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDG------- 467

Query: 63  NLVRRIYPMICHHN-LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
                    +C++  LK   E F+ M    +   D D+++   D      + P    YN 
Sbjct: 468 ---------LCNNGKLKDALEMFKVMQKSKM---DLDASHPFND------VEPDVQTYNI 509

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAG 178
           ++ G   +     A  + +EM    + PD+ T++ +I     +   ++  + ++ + S G
Sbjct: 510 LICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKG 569

Query: 179 GQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAI 237
                  F  LIN Y   G      +V  +     + + +     L+      G  + A+
Sbjct: 570 FSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGAL 629

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLL 275
            +++E+  +G   +   +  ++  L S+ EL R +Q L
Sbjct: 630 DIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVQCL 667



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/295 (19%), Positives = 125/295 (42%), Gaps = 15/295 (5%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I+P+  +Y  +I   C   +   A  ++ +M + ++ P   T + +++A  +  +F    
Sbjct: 279 ISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAE 338

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +Y  +    + PN+ T+ SMI    K    D+A  +   +      P    ++ ++ GY
Sbjct: 339 ELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGY 398

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
              K V   + +L EM +  +  ++ T++ LIH      N    +   +++ S+G     
Sbjct: 399 CGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNV 458

Query: 184 YVFMALINAYTTCGEFEKARQVV---------LDAEIP---VKSRSEVKSALVSALASHG 231
                L++     G+ + A ++          LDA  P   V+   +  + L+  L + G
Sbjct: 459 VTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEG 518

Query: 232 RTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
           + S+A  +YEE+   G   +     ++I+ L  +  L+   Q+ + +    +  D
Sbjct: 519 KFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPD 573



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/166 (20%), Positives = 75/166 (45%)

Query: 2   HAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYE 61
           H   ++ P   +Y  LI    +  K   A ++ E+M    LVP T T NS++    +   
Sbjct: 495 HPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSR 554

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
            +   +++  +      P+  TF ++I+   K+        +  ++    ++  A  Y  
Sbjct: 555 LDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRT 614

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI 167
           ++ G+ +  ++ GAL + +EM  + V PD+ T   ++    ++E++
Sbjct: 615 LIHGFCQVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEEL 660


>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Cucumis sativus]
          Length = 728

 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 62/318 (19%), Positives = 131/318 (41%), Gaps = 40/318 (12%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYE 61
            K+ ++P+  +Y  +I+  C    V  A +++E+MV+    P+  T  S++H  C++ + 
Sbjct: 306 TKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWT 365

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMIS-------------------------------- 89
               R    +I   N KPN  T+ +MIS                                
Sbjct: 366 ERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTT 425

Query: 90  ---LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
               + K  +F  AY L++ +      P    YN+I+ G  ++   + A  +L    Q  
Sbjct: 426 LIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQ 485

Query: 147 VKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203
           ++ D  T++ LI       D+   + +  ++   G Q   +++  LI A+      + + 
Sbjct: 486 IEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSE 545

Query: 204 QVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
           ++  +  ++ +    E  ++++       + S A+  ++++ + GC  +  +  ALI  L
Sbjct: 546 KLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGL 605

Query: 263 NSEGELNRLIQLLEEVHD 280
             E  L+   QL + + D
Sbjct: 606 CKESRLDEARQLYDTMID 623



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 105/240 (43%), Gaps = 13/240 (5%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           + P S +YK +I   C    V  A   + +M++   V    T+  I+ A CE+S    LV
Sbjct: 240 VYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKS----LV 295

Query: 66  RR---IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
            R    +  +    L PN   + SMIS   K      A+ LL+++ +    P    + ++
Sbjct: 296 NRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSL 355

Query: 123 MAGYFRKKDVQGAL-MVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAG 178
           + G  +K   + A  + LK +   N KP+  T++ +I     EE + +    +E++K  G
Sbjct: 356 IHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQG 415

Query: 179 GQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAI 237
                  +  LI+ +   G F KA +++ L +       +   +++V  L   GR  +A 
Sbjct: 416 LVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAF 475



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/245 (20%), Positives = 110/245 (44%), Gaps = 8/245 (3%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  +I+  C   K+  A  + E+M +  LVP+T T  +++    ++  F+    +
Sbjct: 383 PNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYEL 442

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
             ++ +    PN+ T+ S++    K    + A+ LL+   +  +      Y  +++   +
Sbjct: 443 MELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCK 502

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYV 185
           + D+  AL+ L +M +   +PD   ++ LI     +   +D  K ++++   G   TK  
Sbjct: 503 RADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKET 562

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIP---VKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           + ++I  Y  C E + +  V    ++        S    AL+S L    R  +A  +Y+ 
Sbjct: 563 YTSMICGY--CREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYDT 620

Query: 243 IKEAG 247
           + + G
Sbjct: 621 MIDKG 625



 Score = 40.0 bits (92), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 53/255 (20%), Positives = 99/255 (38%), Gaps = 25/255 (9%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
           NL+   E    M+ +  +I     A  ++ D++   L+ T  + N I+      + V+ A
Sbjct: 169 NLERAHEVVECMVGVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYA 228

Query: 136 LMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINA 192
             V  EM    V PDS T+ Y+I       +++   ++  ++   G  +       +I A
Sbjct: 229 GNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITA 288

Query: 193 YTTCGEFEKARQVVLDAEIPVKSRSE---VKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
           +  C +    R V    ++     S      S+++S L   G    A  + EE+ + G  
Sbjct: 289 F--CEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWK 346

Query: 250 LEPRAVIALIEHLNSEGELNRLIQLL----------EEVHDPDYWMDGCCRLILHCVRFK 299
                  +LI  L  +G   R  +L             VH     + G C+        +
Sbjct: 347 PNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKE-------E 399

Query: 300 QLSSATDLLKQLKDK 314
           +LS A  L +++K++
Sbjct: 400 KLSRAEMLFERMKEQ 414


>gi|428171432|gb|EKX40349.1| hypothetical protein GUITHDRAFT_47604, partial [Guillardia theta
           CCMP2712]
          Length = 205

 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 93/200 (46%), Gaps = 3/200 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+   +  +++      ++ +AL ++  M + +L P   T +S++  C +  E  +   +
Sbjct: 6   PNVFHFNAMLSACGRWKRLPLALSLLRCMREMQLKPDVFTFSSLVQTCAKEREGRMAISL 65

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    + PN+  + +++    + + F  A      +KE  + P    Y+AI++    
Sbjct: 66  FREMEQEGIAPNTVVYNNVLVACARAELFGQAIYFFWRMKEEGIPPDLVSYSAIISSLAS 125

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQITKYV 185
           +KD+  AL+VLKE+    ++PD   ++ L+H           ++ YE +   G +    V
Sbjct: 126 RKDLSSALLVLKEIRGQGLRPDKLIYTNLLHAAQTSRRPHKAMEIYELMLDDGLEPDAVV 185

Query: 186 FMALINAYTTCGEFEKARQV 205
           F  LI A+   G++ +A + 
Sbjct: 186 FSCLIGAWGRVGDWRRAEET 205



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 16/152 (10%)

Query: 114 PTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKY 170
           P    +NA+++   R K +  AL +L+ M +  +KPD  TFS L+  C+ E +    I  
Sbjct: 6   PNVFHFNAMLSACGRWKRLPLALSLLRCMREMQLKPDVFTFSSLVQTCAKEREGRMAISL 65

Query: 171 YEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVL------DAEIPVKSRSEVKSALV 224
           + +++  G      V+    N    C   E   Q +       +  IP    S   SA++
Sbjct: 66  FREMEQEGIAPNTVVYN---NVLVACARAELFGQAIYFFWRMKEEGIPPDLVS--YSAII 120

Query: 225 SALASHGRTSDAIIVYEEIKEAGCNLEPRAVI 256
           S+LAS    S A++V +EI+  G  L P  +I
Sbjct: 121 SSLASRKDLSSALLVLKEIR--GQGLRPDKLI 150



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/155 (20%), Positives = 70/155 (45%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           ++++ P   ++  L+       +  +A+ +  +M Q  + P+T   N++L AC  +  F 
Sbjct: 36  EMQLKPDVFTFSSLVQTCAKEREGRMAISLFREMEQEGIAPNTVVYNNVLVACARAELFG 95

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
                +  +    + P+  ++ ++IS     KD  SA  +L +++   L P   +Y  ++
Sbjct: 96  QAIYFFWRMKEEGIPPDLVSYSAIISSLASRKDLSSALLVLKEIRGQGLRPDKLIYTNLL 155

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
                 +    A+ + + M    ++PD+  FS LI
Sbjct: 156 HAAQTSRRPHKAMEIYELMLDDGLEPDAVVFSCLI 190


>gi|115485519|ref|NP_001067903.1| Os11g0482400 [Oryza sativa Japonica Group]
 gi|77550880|gb|ABA93677.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113645125|dbj|BAF28266.1| Os11g0482400 [Oryza sativa Japonica Group]
          Length = 770

 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 126/262 (48%), Gaps = 37/262 (14%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI----YPMICHHNLKPNSE 82
           V + + +   M+   ++P+  T+ S++  C    + NL +++    + + C  NL   + 
Sbjct: 262 VELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNS 321

Query: 83  TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR-----KKDVQG--- 134
           T    + L ++  + D A  L + +++ +++     +NA+++GY +     K D+Q    
Sbjct: 322 T----MYLYLRKGETDEAMRLFEQMEDASIIT----WNAMISGYAQIMDSAKDDLQARSR 373

Query: 135 ---ALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFM---- 187
              AL + ++++++ +KPD  TFS ++  CS     +   EQ +    Q  K  F+    
Sbjct: 374 GFQALTIFRDLKRSVMKPDLFTFSSILSVCS----AMMALEQGEQIHAQTIKSGFLSDVV 429

Query: 188 ---ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
              AL+N Y  CG  + A +  L  E+P ++     S ++S  + HG+  +AI ++EE++
Sbjct: 430 VNSALVNMYNKCGCIQDANKAFL--EMPTRTFVTWTS-MISGYSQHGQPQEAIQLFEEMR 486

Query: 245 EAGCNLEPRAVIALIEHLNSEG 266
            AG        ++L+   +  G
Sbjct: 487 LAGVRPNEITFVSLLSACSYAG 508



 Score = 42.4 bits (98), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 52/247 (21%), Positives = 99/247 (40%), Gaps = 32/247 (12%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL +   + +  + P   T +SIL  C          +I+              F S + 
Sbjct: 377 ALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSG-------FLSDVV 429

Query: 90  LNVKIKDFDSAYSLLDDLKEMNL-MPTASM--YNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           +N  + +  +    + D  +  L MPT +   + ++++GY +    Q A+ + +EM  A 
Sbjct: 430 VNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAG 489

Query: 147 VKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYV-------FMALINAYTTC 196
           V+P+  TF  L+  CS     E+   Y++ +K       +Y        +  +I+ +   
Sbjct: 490 VRPNEITFVSLLSACSYAGLVEEAEHYFDMMKK------EYCIEPVVDHYGCMIDMFVRL 543

Query: 197 GEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI 256
           G  E A   +       +    + S+LV+   SHG    A    +++ E    L+P+ + 
Sbjct: 544 GRVEDAFSFI--KRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLE----LKPKGIE 597

Query: 257 ALIEHLN 263
             I  LN
Sbjct: 598 TYILLLN 604



 Score = 38.1 bits (87), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 29/139 (20%), Positives = 64/139 (46%), Gaps = 3/139 (2%)

Query: 29  VALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
           + L+V  +M++    PS  T+ + L+AC  S + +L ++++     +  +  +    S+ 
Sbjct: 162 LGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLC 221

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
           SL  K+   DSA      + E N++   +M +A       ++ V+  + +  +M    V 
Sbjct: 222 SLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAE---DEECVELGMSLFIDMLMDGVM 278

Query: 149 PDSQTFSYLIHNCSNEEDI 167
           P+  T + ++  C    D+
Sbjct: 279 PNEFTLTSVMSLCGTRLDL 297


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 76/404 (18%), Positives = 175/404 (43%), Gaps = 16/404 (3%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS 86
           V +A ++ +++V+  +  +  T+N +++A  ++ +    +     +    + P+  T+ +
Sbjct: 78  VDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNT 137

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           +I+   +    + A+ L+D +    L P    YNAI+ G  +      A  VL EM +  
Sbjct: 138 LINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIG 197

Query: 147 VKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203
           + PD+ T++ L+  C   ++++   + ++++ S G       F ALI   +  G  ++A 
Sbjct: 198 MSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQAL 257

Query: 204 QVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
           +   D +   +   + + + L+     +G  S+A+ V +E+ E GC L+      ++  L
Sbjct: 258 KYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGL 317

Query: 263 NSEGELNRLIQLLEEVHD----PDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDD 318
             E  L+   +L  E+ +    PD++      LI    +   ++ A  L + +  +    
Sbjct: 318 CKEKMLSEADELFTEMTERGVFPDFYT--FTTLINGYSKDGNMNKAVTLFEMMIQRNLKP 375

Query: 319 EMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLK 378
           ++       + FC+ +  +  + ++  D++        + P+      L+    N   + 
Sbjct: 376 DVVTYNTLIDGFCKGSEMEKVN-ELWNDMIS-----RRIYPNHISYGILINGYCNMGCVS 429

Query: 379 RAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
            A  +W E    G    +++   + K +  +GN   A + LS M
Sbjct: 430 EAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNM 473



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 86/432 (19%), Positives = 168/432 (38%), Gaps = 67/432 (15%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  +I   C   K   A  V+++M++  + P T T N +L  C  +       
Sbjct: 163 LKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAE 222

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           RI+  +    + P+  +F ++I L  K    D A     D+K   L P   +Y  ++ G+
Sbjct: 223 RIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGF 282

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQITK 183
            R   +  AL V  EM +     D  T++ +++    E+   +  + + ++   G     
Sbjct: 283 CRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDF 342

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
           Y F  LIN Y+  G   K                                  A+ ++E +
Sbjct: 343 YTFTTLINGYSKDGNMNK----------------------------------AVTLFEMM 368

Query: 244 KEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHD----PDY-----WMDGCCRLI 292
            +   NL+P  V    LI+      E+ ++ +L  ++      P++      ++G C   
Sbjct: 369 IQR--NLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCN-- 424

Query: 293 LHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIK 352
           + CV     S A  L  ++ +K  +  +       + +C+       D        +F+ 
Sbjct: 425 MGCV-----SEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKAD--------EFLS 471

Query: 353 DEL--GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASG 410
           + L  G+ P     + L+   +   ++ RA  +  + EN+GL  +V++Y  +   F   G
Sbjct: 472 NMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQG 531

Query: 411 NRKSASKLLSKM 422
             + A  ++ KM
Sbjct: 532 RMQEAELIMLKM 543



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 79/154 (51%), Gaps = 2/154 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           I P+  SY  LI   C++  V  A  + ++MV+     +  T N+I+   C         
Sbjct: 408 IYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKAD 467

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +  M+    + P+  T+ ++I+  +K ++ D A++L++ ++   L+P    YN I+ G
Sbjct: 468 EFLSNMLLK-GIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNG 526

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159
           + R+  +Q A +++ +M +  V PD  T++ LI+
Sbjct: 527 FSRQGRMQEAELIMLKMIERGVNPDRSTYTSLIN 560



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/246 (20%), Positives = 109/246 (44%), Gaps = 6/246 (2%)

Query: 7   ITPSSASYKKLIT-YSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           + P   ++  LI  YS D   ++ A+ + E M+Q  L P   T N+++    +  E   V
Sbjct: 338 VFPDFYTFTTLINGYSKDG-NMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKV 396

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             ++  +    + PN  ++  +I+    +     A+ L D++ E     T    N I+ G
Sbjct: 397 NELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKG 456

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY---EQLKSAGGQIT 182
           Y R  +   A   L  M    + PD  T++ LI+    EE++ + +    +++++G    
Sbjct: 457 YCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPD 516

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
              +  ++N ++  G  ++A  ++L   E  V       ++L++   +     +A  V++
Sbjct: 517 VITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHD 576

Query: 242 EIKEAG 247
           E+ + G
Sbjct: 577 EMLQRG 582



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 46/248 (18%), Positives = 107/248 (43%), Gaps = 4/248 (1%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K+ ++P +A+Y  L+   C    +  A  + ++M    +VP   + ++++    ++   +
Sbjct: 195 KIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLD 254

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              + +  + +  L P++  +  +I    +      A  + D++ E   +     YN I+
Sbjct: 255 QALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTIL 314

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQ 180
            G  ++K +  A  +  EM +  V PD  TF+ LI+  S + ++   +  +E +     +
Sbjct: 315 NGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLK 374

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIV 239
                +  LI+ +    E EK  ++  D     +         L++   + G  S+A  +
Sbjct: 375 PDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRL 434

Query: 240 YEEIKEAG 247
           ++E+ E G
Sbjct: 435 WDEMVEKG 442



 Score = 42.0 bits (97), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 51/257 (19%), Positives = 111/257 (43%), Gaps = 30/257 (11%)

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSM------ISLN---------VKIKDFDSAYSLLDD 106
           F+L+ R Y  +    L+   E FR +      +S+N         VK+   D A+ +  +
Sbjct: 30  FDLLVRTY--VQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQE 87

Query: 107 LKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED 166
           +    +       N ++    + + ++     L +ME+  V PD  T++ LI+    +  
Sbjct: 88  VVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGL 147

Query: 167 IIKYYEQLKSAGGQITK---YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSA 222
           + + +E + S  G+  K   + + A+IN     G++ +A+ V+ +  +I +   +   + 
Sbjct: 148 LEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNI 207

Query: 223 LVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD-- 280
           L+     +    DA  +++E+   G   +  +  ALI  L+  G L++ ++   ++ +  
Sbjct: 208 LLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAG 267

Query: 281 --PD-----YWMDGCCR 290
             PD       + G CR
Sbjct: 268 LAPDNVIYTILIGGFCR 284


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 100/443 (22%), Positives = 181/443 (40%), Gaps = 52/443 (11%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEE---SYEFNLVRRI 68
           S+  LI   C   K+  AL    ++ +  L P   T N++LH  C E   S   NL  ++
Sbjct: 116 SFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQM 175

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +   C    +PN  TF ++++   +      A +LLD + E  L PT   Y  I+ G  +
Sbjct: 176 FETTC----RPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCK 231

Query: 129 KKDVQGALMVLKEMEQ-ANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKY 184
           K D   AL +L++ME+ +++ P+   +S +I +   +    D    + +++  G     +
Sbjct: 232 KGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLF 291

Query: 185 VFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
            + ++I  + + G +  A Q++ +  E  +       +AL++A    G+  +A  +Y+E+
Sbjct: 292 TYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEM 351

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWM--DGCCRLILHCVRFKQL 301
              G         ++I+    +  L+    +        Y M   GC     + + F  L
Sbjct: 352 LPRGIIPNTITYSSMIDGFCKQNRLDAAEHMF-------YLMATKGCSP---NLITFNTL 401

Query: 302 SSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTD----------PPDVQIGLDLLQFI 351
                  K++     DD M + +  +E      TT             D+   LDLLQ +
Sbjct: 402 IDGYCGAKRI-----DDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM 456

Query: 352 KDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYE------NAGLPYN-----VLSYL 400
                 P    C   L G C N + LK A  ++K  +      +A  P+N     V +Y 
Sbjct: 457 ISSGLCPDIVTCDTLLDGLCDNGK-LKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYN 515

Query: 401 WMYKAFLASGNRKSASKLLSKMP 423
            +    +  G    A +L  +MP
Sbjct: 516 ILISGLINEGKFLEAEELYEEMP 538



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 118/281 (41%), Gaps = 26/281 (9%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +I+P   +Y  LI       K   A ++ ++M+   ++P+T T +S++    +    +  
Sbjct: 320 KISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAA 379

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             ++ ++      PN  TF ++I      K  D    LL ++ E  L+   + YN ++ G
Sbjct: 380 EHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHG 439

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYV 185
           ++   D+  AL +L+EM  + + PD  T   L+    +   +    E  K          
Sbjct: 440 FYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKV--------- 490

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIP---VKSRSEVKSALVSALASHGRTSDAIIVYEE 242
                         +K+++  LDA  P   V+   +  + L+S L + G+  +A  +YEE
Sbjct: 491 -------------MQKSKK-DLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEE 536

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY 283
           +   G   +     ++I+ L  +  L+   Q+ + +    +
Sbjct: 537 MPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSF 577



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/291 (18%), Positives = 121/291 (41%), Gaps = 23/291 (7%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           +P+  ++  LI   C   ++   ++++ +M +  LV  T T N+++H      + N    
Sbjct: 392 SPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALD 451

Query: 68  IYPMICHHNLKPN---SETFRSMISLNVKIKDFDSAYSLLDDLKE--------MNLMPTA 116
           +   +    L P+    +T    +  N K+KD    + ++   K+          + P  
Sbjct: 452 LLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDV 511

Query: 117 SMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQ 173
             YN +++G   +     A  + +EM    + PD+ T+S +I     +   ++  + ++ 
Sbjct: 512 QTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDS 571

Query: 174 LKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSA-----LVSALA 228
           + S         F  LIN Y   G  +   ++  +    +  R  V +A     L+    
Sbjct: 572 MGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCE----MGRRGIVANAITYITLICGFR 627

Query: 229 SHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279
             G  + A+ +++E+  +G   +   +  ++  L S+ EL R + +LE++ 
Sbjct: 628 KVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/440 (18%), Positives = 168/440 (38%), Gaps = 59/440 (13%)

Query: 2   HAKLEIT--PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEE 58
           H   E T  P+  ++  L+   C   ++  A+ ++++M++  L P+  T  +I+   C++
Sbjct: 173 HQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKK 232

Query: 59  S---YEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPT 115
                  NL+R++  +    ++ PN   + ++I    K      A +L  +++E  + P 
Sbjct: 233 GDTVSALNLLRKMEEV---SHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289

Query: 116 ASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYE 172
              YN+++ G+        A  +L+EM +  + PD  T++ LI+    E       + Y+
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYD 349

Query: 173 QLKSAGGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHG 231
           ++   G       + ++I+ +      + A  +  L A           + L+       
Sbjct: 350 EMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAK 409

Query: 232 RTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDP---------D 282
           R  D + +  E+ E G   +      LI      G+LN  + LL+E+            D
Sbjct: 410 RIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCD 469

Query: 283 YWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQ 342
             +DG C          +L  A ++ K ++   KD + +  ++  E          PDVQ
Sbjct: 470 TLLDGLC-------DNGKLKDALEMFKVMQKSKKDLDASHPFNGVE----------PDVQ 512

Query: 343 IGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWM 402
                                 + L+   +N      A  +++E  + G+  + ++Y  M
Sbjct: 513 T--------------------YNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSM 552

Query: 403 YKAFLASGNRKSASKLLSKM 422
                       A+++   M
Sbjct: 553 IDGLCKQSRLDEATQMFDSM 572



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/257 (20%), Positives = 109/257 (42%), Gaps = 11/257 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+D+   M++   +PS      ++         +LV  +Y  +    ++ +  +F  +I 
Sbjct: 63  AIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIK 122

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
                     A S    L ++ L P    +N ++ G   +  V  AL +  +M +   +P
Sbjct: 123 CFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRP 182

Query: 150 DSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           +  TF+ L++    E  I++     +++   G Q T+  +  +++     G+   A  ++
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLL 242

Query: 207 LDAE-----IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEH 261
              E     IP      + SA++ +L   GR SDA  ++ E++E G   +     ++I  
Sbjct: 243 RKMEEVSHIIP---NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 262 LNSEGELNRLIQLLEEV 278
             S G  +   QLL+E+
Sbjct: 300 FCSSGRWSDAEQLLQEM 316



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/169 (20%), Positives = 78/169 (46%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  LI+   +  K   A ++ E+M    +VP T T +S++    +    +   
Sbjct: 507 VEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEAT 566

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++  +   +  PN  TF ++I+   K    D    L  ++    ++  A  Y  ++ G+
Sbjct: 567 QMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGF 626

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK 175
            +  ++ GAL + +EM  + V PD+ T   ++    ++E++ +    L+
Sbjct: 627 RKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLE 675


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 67/312 (21%), Positives = 128/312 (41%), Gaps = 41/312 (13%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I+P   +Y  LI   C+L +      ++ +MV  +++P   + N+++ A  +  +     
Sbjct: 232 ISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAH 291

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +    ++PN  T+ +++  +  + + D A  + D +     MP    YN ++ GY
Sbjct: 292 DVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGY 351

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITK 183
            + + +  A+ +  EM +  + PD+ T+S LIH  C  E  +D I  + ++  A  QI  
Sbjct: 352 CKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEM-VACSQIPN 410

Query: 184 YVF-----------------MAL-------------------INAYTTCGEFEKARQVVL 207
            V                  MAL                   I+     GE E AR +  
Sbjct: 411 LVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFS 470

Query: 208 D-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
           + +   ++      S +++ L   G   +A  ++ E+ E GC L       +        
Sbjct: 471 NLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNN 530

Query: 267 ELNRLIQLLEEV 278
           E +R IQLL+E+
Sbjct: 531 ETSRAIQLLQEM 542



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 134/324 (41%), Gaps = 30/324 (9%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  LI   C +     A+ ++  MVQ    P+    N+I+ +  +  +      +
Sbjct: 164 PDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNL 223

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    + P+  T+ S+I     + ++    +LL+++ +  +MP    +N ++    +
Sbjct: 224 FSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCK 283

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYV 185
           +  V  A  V+ +M Q  V+P+  T++ L+      S  ++ +K ++ +   G       
Sbjct: 284 EGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVIS 343

Query: 186 FMALINAYTTCGEFEKAR----QVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
           +  LIN Y      +KA     ++     IP    +   S L+  L    R  DAI ++ 
Sbjct: 344 YNTLINGYCKIQRIDKAMYLFGEMCRQELIP---DTVTYSTLIHGLCHVERLQDAIALFH 400

Query: 242 EIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVH----DPDYW-----MDGCCR 290
           E+    C+  P  V    L+++L     L   + LL+ +     DPD       +DG CR
Sbjct: 401 EM--VACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCR 458

Query: 291 LILHCVRFKQLSSATDLLKQLKDK 314
                    +L +A DL   L  K
Sbjct: 459 A-------GELEAARDLFSNLSSK 475



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 98/487 (20%), Positives = 192/487 (39%), Gaps = 55/487 (11%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P+  +   LI   C L +V  A  V+ ++++    P T T  +++       +     
Sbjct: 92  IPPNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEAL 151

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +     +P+  T+ ++I+   K+ +  +A  LL  + + N  P    YN I+   
Sbjct: 152 HLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSL 211

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITK 183
            + + V  A  +  EM    + PD  T++ LIH   N    + +     ++  +      
Sbjct: 212 CKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDV 271

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEI--PVKSRSEVKSALVSALASHGRTSDAIIVYE 241
             F  +++A    G+  +A  VV D  I   V+      +AL+          +A+ V++
Sbjct: 272 VSFNTVVDALCKEGKVTEAHDVV-DKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFD 330

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCR--LILHCVRFK 299
            +   GC   P  VI+    +N   ++ R+ + +       Y     CR  LI   V + 
Sbjct: 331 TMVCKGC--MPN-VISYNTLINGYCKIQRIDKAM-------YLFGEMCRQELIPDTVTYS 380

Query: 300 QLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDV---QIGLDLL---QFIKD 353
            L      +++L+D            F E+   +A +  P++   +I LD L   +++ +
Sbjct: 381 TLIHGLCHVERLQDAIA--------LFHEM---VACSQIPNLVTYRILLDYLCKNRYLAE 429

Query: 354 ELG---------LPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYK 404
            +          L P  +  +  +     A +L+ A  ++    + GL  +V +Y  M  
Sbjct: 430 AMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMIN 489

Query: 405 AFLASGNRKSASKLLSKMPKD---------DPHVRFVIQACKQTYTIPSLQK--ERGFEK 453
                G    ASKL  +M ++         +   R  ++  + +  I  LQ+   RGF  
Sbjct: 490 GLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSA 549

Query: 454 DRDTLLL 460
           D  T+ L
Sbjct: 550 DASTMTL 556



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/261 (20%), Positives = 111/261 (42%), Gaps = 16/261 (6%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTET----INSILHACEES 59
           +++  PS+  + KL+T    +      L +  QM    + P+  T    INS  H     
Sbjct: 54  RMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVG 113

Query: 60  YEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMY 119
           + F+++ +I  +      +P++ TF ++I           A  L D +      P    Y
Sbjct: 114 FAFSVLAKILKL----GHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTY 169

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKS 176
             ++ G  +  +   A+ +L  M Q N +P+   ++ +I +   +  +      + ++ +
Sbjct: 170 GTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVT 229

Query: 177 AGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTS 234
            G     + + +LI+A     E+ K    +L+  +  K   +V S   +V AL   G+ +
Sbjct: 230 KGISPDIFTYNSLIHALCNLCEW-KHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVT 288

Query: 235 DAIIVYEEIKEAGCNLEPRAV 255
           +A  V +++ + G  +EP  V
Sbjct: 289 EAHDVVDKMIQRG--VEPNVV 307



 Score = 45.8 bits (107), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 83/436 (19%), Positives = 171/436 (39%), Gaps = 34/436 (7%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEF 62
           KL   P +A++  LI       K+  AL + ++M+     P   T  ++++  C+     
Sbjct: 124 KLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTS 183

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
             +R +  M+   N +PN   + ++I    K +    A++L  ++    + P    YN++
Sbjct: 184 AAIRLLGSMV-QKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSL 242

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY---EQLKSAGG 179
           +       + +    +L EM  + + PD  +F+ ++     E  + + +   +++   G 
Sbjct: 243 IHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGV 302

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAI 237
           +     + AL++ +    E ++A + V D  +       V S   L++      R   A+
Sbjct: 303 EPNVVTYTALMDGHCLLSEMDEAVK-VFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAM 361

Query: 238 IVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC------ 289
            ++ E+      L P  V    LI  L     L   I L  E       M  C       
Sbjct: 362 YLFGEMCRQ--ELIPDTVTYSTLIHGLCHVERLQDAIALFHE-------MVACSQIPNLV 412

Query: 290 --RLIL-HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLD 346
             R++L +  + + L+ A  LLK ++    D ++ +     +  C+       +++   D
Sbjct: 413 TYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAG-----ELEAARD 467

Query: 347 LLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAF 406
           L   +  + GL P       ++        L  A  +++E +  G   N   Y  + + F
Sbjct: 468 LFSNLSSK-GLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGF 526

Query: 407 LASGNRKSASKLLSKM 422
           L +     A +LL +M
Sbjct: 527 LRNNETSRAIQLLQEM 542


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 86/399 (21%), Positives = 163/399 (40%), Gaps = 31/399 (7%)

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
           FN + R++P        P +  F  ++   V++  + +A SL   L+   + P+ + +  
Sbjct: 43  FNRMVRVFP-------PPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTI 95

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAG 178
           ++  YF +     A  +L  + ++  +P+  TF+ +I+       I K   + + L + G
Sbjct: 96  LINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQG 155

Query: 179 GQITKYVFMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAI 237
               ++ +  LIN  +  G+ + A  ++ + E   V+    + SAL+  L   G  SDA+
Sbjct: 156 YLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDAL 215

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLL-----EEVHDPDYWMDGCCRLI 292
            +  +I E G  L+     +LI+   S G    + QLL     E V   DY  +    LI
Sbjct: 216 GLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFN---ILI 272

Query: 293 LHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIK 352
               +  ++  A  +L  +  + +  ++       E +C        +V    +L   + 
Sbjct: 273 DALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCS-----RENVHEARELFNRMV 327

Query: 353 DELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNR 412
              GL P     + L+      + +  A +++KE  N  L   + SY  +      SG  
Sbjct: 328 KR-GLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRI 386

Query: 413 KSASKLLSKM-----PKDDPHVRFVIQA-CKQTYTIPSL 445
               KLL +M     P D      +I A CK+   + +L
Sbjct: 387 SHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEAL 425



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 93/466 (19%), Positives = 180/466 (38%), Gaps = 52/466 (11%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  + P+   Y  LI   C    V  AL +  Q+ +  ++    T NS++  C     + 
Sbjct: 188 KSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQ 247

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
            V ++   +   N+ P+  TF  +I    K      A  +L  + +    P    YNA+M
Sbjct: 248 EVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALM 307

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQ 180
            GY  +++V  A  +   M +  ++PD   ++ LI   C  +  ++ +  +++L +    
Sbjct: 308 EGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLV 367

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIV 239
            T   + +LI+     G     ++++ +     +    V  + L+ AL   GR  +A+ V
Sbjct: 368 PTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGV 427

Query: 240 YEEIKEAGCNLEPRAVI--------ALIEHLNSEGEL-NRLIQ--LLEEVHDPDYWMDGC 288
              + + G  ++P  V          L  ++N   ++ NR+++  L  ++ + +  ++G 
Sbjct: 428 LVMMMKKG--VKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGY 485

Query: 289 CR----------------------------LILHCVRFKQLSSATDLLKQLKDKFKDDEM 320
           C+                            LI       ++    +LL ++ D  +  ++
Sbjct: 486 CKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDV 545

Query: 321 AMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRA 380
                  + FC+   T P D  I L   Q ++   G+ P       ++        LK A
Sbjct: 546 ITYNILLDAFCK---TQPFDKAISL-FRQIVE---GIWPDFYTNHAIVDNLCKGEKLKMA 598

Query: 381 HLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDD 426
               K     G   NV +Y  +  A    G+   A  LLSKM  +D
Sbjct: 599 EDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDND 644



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 72/158 (45%), Gaps = 1/158 (0%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           MH   +  P   +Y  LI   C   ++  AL V+  M++  + P+  T N+++       
Sbjct: 396 MHGSAQ-PPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRN 454

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
             N+ + I+  +    L+P+   +  +I+   K +  D A  L  +++  NL+P  + YN
Sbjct: 455 NVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYN 514

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
           +++ G      +     +L EM  +   PD  T++ L+
Sbjct: 515 SLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILL 552



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 49/253 (19%), Positives = 103/253 (40%), Gaps = 22/253 (8%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
            K  + P   +Y  LI   C    V  A+ + +++    LVP+  + NS++     S   
Sbjct: 327 VKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRI 386

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           + V+++   +      P+  T+  +I    K      A  +L  + +  + P    YNA+
Sbjct: 387 SHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAM 446

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGG 179
           M GY  + +V  A  +   M ++ ++PD   ++ LI+  C  E  ++ I  +++++    
Sbjct: 447 MDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNL 506

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
                 + +LI+     G     ++                  L+  +   G++ D +I 
Sbjct: 507 IPDIASYNSLIDGLCNLGRIPHVQE------------------LLDEMCDSGQSPD-VIT 547

Query: 240 YEEIKEAGCNLEP 252
           Y  + +A C  +P
Sbjct: 548 YNILLDAFCKTQP 560



 Score = 45.4 bits (106), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 53/280 (18%), Positives = 117/280 (41%), Gaps = 14/280 (5%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  ++  +I   C    +  ALD  + ++    +    T  ++++   ++ +      +
Sbjct: 123 PNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHL 182

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +   +++PN   + ++I    K      A  L   + E  ++  A  YN+++ G   
Sbjct: 183 LQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCS 242

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYV 185
               Q    +L +M + NV PD  TF+ LI     E  I++       +   G +     
Sbjct: 243 VGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVT 302

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEV--KSALVSALASHGRTSDAIIVYEEI 243
           + AL+  Y +     +AR+ + +  +      +V   + L+          +A+++++E+
Sbjct: 303 YNALMEGYCSRENVHEARE-LFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKEL 361

Query: 244 KEAGCNLEPRAVIA----LIEHLNSEGELNRLIQLLEEVH 279
               CN      IA    LI+ L + G ++ + +LL+E+H
Sbjct: 362 ----CNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMH 397



 Score = 38.9 bits (89), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 1/153 (0%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
            + P  ASY  LI   C+L ++    +++++M      P   T N +L A  ++  F+  
Sbjct: 505 NLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKA 564

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             ++  I    + P+  T  +++    K +    A   L  L      P    Y  ++  
Sbjct: 565 ISLFRQIVE-GIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINA 623

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
             +      A+++L +ME  +  PD+ TF  +I
Sbjct: 624 LCKDGSFGEAMLLLSKMEDNDRPPDAITFEIII 656


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/283 (19%), Positives = 121/283 (42%), Gaps = 10/283 (3%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
            K  + P+  S+  LI   C    +     +   M++  + P   T + +++   +  + 
Sbjct: 252 GKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQL 311

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           +   +++  +C   L PN  TF ++I+ +      D    +   +    + P    YN +
Sbjct: 312 DDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTL 371

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGG 179
           + G  +  D++ A  ++ EM Q  +KPD  T++ LI  C  E D+   ++  +++   G 
Sbjct: 372 INGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGI 431

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAII 238
           ++    F ALI+ +   G+  +A + + +  E  +K      + ++      G   D   
Sbjct: 432 ELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKG---DVKT 488

Query: 239 VYEEIKEAGCNLEPRAVIA---LIEHLNSEGELNRLIQLLEEV 278
            ++ +KE  C+     V+    L+  L  +G++     LL+ +
Sbjct: 489 GFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAM 531



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/268 (20%), Positives = 118/268 (44%), Gaps = 11/268 (4%)

Query: 35  EQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKI 94
           E+++     P     N ++H   + ++ N  + ++  I    L+P   +F ++I+   K 
Sbjct: 214 EEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKS 273

Query: 95  KDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTF 154
            + D  + L   + E  + P    Y+ ++ G  ++  +  A  +  EM    + P+  TF
Sbjct: 274 GNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTF 333

Query: 155 SYLI--HNCSNEEDI-IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AE 210
           + LI  H  +   D+ ++ Y+Q+   G +     +  LIN     G+  +A+++V++  +
Sbjct: 334 TTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQ 393

Query: 211 IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGEL-- 268
             +K      + L+      G    A+ + +E+ + G  L+  A  ALI     EG++  
Sbjct: 394 RGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIE 453

Query: 269 --NRLIQLLEEVHDPDYWMDGCCRLILH 294
               L ++LE    PD   D    +++H
Sbjct: 454 AERTLREMLEAGIKPD---DATYTMVIH 478



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/278 (19%), Positives = 119/278 (42%), Gaps = 10/278 (3%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P    +  L+   C   K++ A  +  ++ +  L P+  + N++++   +S   +   R+
Sbjct: 223 PDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRL 282

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +  + + P+  T+  +I+   K    D A  L  ++ +  L+P    +  ++ G+  
Sbjct: 283 KRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCV 342

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYV 185
                  + + ++M +  VKPD  T++ LI+      D+    K   ++   G +  K+ 
Sbjct: 343 TGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFT 402

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK----SALVSALASHGRTSDAIIVYE 241
           +  LI+     G+ E A ++  +    VK   E+     +AL+S     G+  +A     
Sbjct: 403 YTMLIDGCCKEGDLESALEIRKEM---VKEGIELDNVAFTALISGFCREGQVIEAERTLR 459

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279
           E+ EAG   +      +I     +G++    +LL+E+ 
Sbjct: 460 EMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQ 497



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 71/333 (21%), Positives = 131/333 (39%), Gaps = 23/333 (6%)

Query: 79  PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMV 138
           P+   F  ++    K    + A  L  ++ +  L PT   +N ++ GY +  ++     +
Sbjct: 223 PDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRL 282

Query: 139 LKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTT 195
            + M +  V PD  T+S LI+    E   +D  K + ++   G       F  LIN +  
Sbjct: 283 KRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCV 342

Query: 196 CGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRA 254
            G  +   ++        VK      + L++ L   G   +A  +  E+ + G   +   
Sbjct: 343 TGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFT 402

Query: 255 VIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQLSSATDLLKQLK 312
              LI+    EG+L   +++ +E+      +D      LI    R  Q+  A   L+++ 
Sbjct: 403 YTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREML 462

Query: 313 D---KFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLG 369
           +   K  D    M  H    FC+       DV+ G  LL+ ++ + G  P     + LL 
Sbjct: 463 EAGIKPDDATYTMVIHG---FCKKG-----DVKTGFKLLKEMQCD-GHVPGVVTYNVLLN 513

Query: 370 ACVNARDLKRAHLIWKEYENAG-----LPYNVL 397
                  +K A+++     N G     + YN+L
Sbjct: 514 GLCKQGQMKNANMLLDAMLNLGVVPDDITYNIL 546



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 68/153 (44%), Gaps = 2/153 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           + P   +Y  LI   C    +  AL++ ++MV+  +        +++   C E       
Sbjct: 396 LKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAE 455

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           R +  M+    +KP+  T+  +I    K  D  + + LL +++    +P    YN ++ G
Sbjct: 456 RTLREML-EAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNG 514

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
             ++  ++ A M+L  M    V PD  T++ L+
Sbjct: 515 LCKQGQMKNANMLLDAMLNLGVVPDDITYNILL 547


>gi|357138657|ref|XP_003570906.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Brachypodium distachyon]
          Length = 608

 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 54/266 (20%), Positives = 127/266 (47%), Gaps = 14/266 (5%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
            P++ SY   + +     +   AL +  +M++  L P   T+  +L A   + E    R 
Sbjct: 79  APTAFSYNVTLRFFAST-RPRTALRLFLRMLRAALRPDAYTLPFLLLAAARAPEPPFARS 137

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
            + ++C   L+ +  T  S++++   + D  +A  + D +   +++     +NA+M  Y 
Sbjct: 138 AHALLCRLGLQAHDHTVHSLVTMYSNLGDPLAARRVFDGIPRRDVVS----WNAMMKAYE 193

Query: 128 RKKDVQGALMVLKEM-EQANVKPDSQTFSYLIHNCSNEEDII--KYYEQ-LKSAGGQITK 183
           R         + ++M ++  V P+  T + ++  C +  D++  ++ E+ ++SA  ++  
Sbjct: 194 RAGMAADVARMFRDMIDEGAVAPNEVTVAVVLAACRDAGDLVLGRWLEEWVRSAEIEVGS 253

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEE 242
            V  AL+  Y  CGE  +AR+ V D    +  +  V  +A+++  A +G + +AI ++  
Sbjct: 254 LVGSALVGMYEKCGEMTEARR-VFDG---IAHKDVVAWNAMITGYAQNGMSKEAIALFHS 309

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGEL 268
           +++ G + +   ++ ++    + G L
Sbjct: 310 MRQEGASPDKITLVGVLSACAAVGAL 335



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 99/211 (46%), Gaps = 14/211 (6%)

Query: 39  QGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFD 98
           +G + P+  T+  +L AC ++ +  L R +   +    ++  S    +++ +  K  +  
Sbjct: 211 EGAVAPNEVTVAVVLAACRDAGDLVLGRWLEEWVRSAEIEVGSLVGSALVGMYEKCGEMT 270

Query: 99  SAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            A  + D +   +++     +NA++ GY +    + A+ +   M Q    PD  T   ++
Sbjct: 271 EARRVFDGIAHKDVVA----WNAMITGYAQNGMSKEAIALFHSMRQEGASPDKITLVGVL 326

Query: 159 HNCSNEEDI-----IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPV 213
             C+    +     +  Y   +   G +  YV  AL++ Y+ CG+ +KA QV    ++P 
Sbjct: 327 SACAAVGALELGTELDAYASHRGLYGNV--YVGTALVDMYSKCGDLDKAVQVF--GKLPC 382

Query: 214 KSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           K+ +   +AL+  LA +GR  +AI  +E ++
Sbjct: 383 KNEA-TWNALICGLAFNGRGHEAIRQFEVMR 412


>gi|356557251|ref|XP_003546931.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Glycine max]
          Length = 808

 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 89/467 (19%), Positives = 194/467 (41%), Gaps = 23/467 (4%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
            P    Y  +I   C    +  A   ++++    ++P+ ET  ++++   ++ EF  V +
Sbjct: 233 VPHVVFYNMIIDGYCKKGDLQCATRTLKELKMKGVLPTVETYGALINGFCKAGEFEAVDQ 292

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +   +    L  N + F ++I    K      A   +  + EM   P  + YN ++    
Sbjct: 293 LLTEMAARGLNMNVKVFNNVIDAEFKYGLVTKAAETMRRMAEMGCGPDITTYNTMINFSC 352

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQL---KSAGGQITKY 184
           +   ++ A   L++ ++  + P+  +++ L+H    + D +K    L      G +    
Sbjct: 353 KGGRIKEADEFLEKAKERGLLPNKFSYTPLMHAYCKQGDYVKAAGMLFRIAEIGEKPDLV 412

Query: 185 VFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
            + A I+     GE + A  V     E  V   +++ + L+S L  +GR     ++  E+
Sbjct: 413 SYGAFIHGVVVHGEIDVALMVREKMMEKGVFPDAQIYNVLMSGLCKNGRFPAMKLLLSEM 472

Query: 244 KEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEV--HDPDYWMDGCCRLILHCVRFK 299
            +   N++P   +   L++     GEL+  I++ + +     D  + G   +I    +F 
Sbjct: 473 LDR--NVQPDVYVFATLMDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFG 530

Query: 300 QLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLL-QFIKDELGLP 358
           +++ A   L ++K+     +   EY +S +          D+   L +  Q +K +    
Sbjct: 531 KMTDALSCLNKMKNVHHAPD---EYTYSTVI--DGYVKQHDMSSALKMFGQMMKHK--FK 583

Query: 359 PSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKL 418
           P+      L+       D+ RA  +++  ++  L  NV++Y  +   F  +G  + A+ +
Sbjct: 584 PNVITYTSLINGFCKKADMIRAEKVFRGMKSFDLVPNVVTYTTLVGGFFKAGKPEKATSI 643

Query: 419 LSKM-----PKDDPHVRFVIQACKQTYTIPSLQKERGFEKDRDTLLL 460
              M     P +D    ++I     T T P L +E+   ++  +L+L
Sbjct: 644 FELMLMNGCPPNDATFHYLINGLTNTATSPVLIEEKDSMENERSLIL 690



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 69/157 (43%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P    Y  +I   C   K+  AL  + +M      P   T ++++    + ++ +   
Sbjct: 512 VDPGIVGYNAMIKGFCKFGKMTDALSCLNKMKNVHHAPDEYTYSTVIDGYVKQHDMSSAL 571

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++  +  H  KPN  T+ S+I+   K  D   A  +   +K  +L+P    Y  ++ G+
Sbjct: 572 KMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFRGMKSFDLVPNVVTYTTLVGGF 631

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163
           F+    + A  + + M      P+  TF YLI+  +N
Sbjct: 632 FKAGKPEKATSIFELMLMNGCPPNDATFHYLINGLTN 668



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/202 (19%), Positives = 87/202 (43%), Gaps = 3/202 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P +  Y  L++  C   +      ++ +M+   + P      +++     + E +   
Sbjct: 442 VFPDAQIYNVLMSGLCKNGRFPAMKLLLSEMLDRNVQPDVYVFATLMDGFIRNGELDEAI 501

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +I+ +I    + P    + +MI    K      A S L+ +K ++  P    Y+ ++ GY
Sbjct: 502 KIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNKMKNVHHAPDEYTYSTVIDGY 561

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITK 183
            ++ D+  AL +  +M +   KP+  T++ LI+    + D+I   K +  +KS       
Sbjct: 562 VKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFRGMKSFDLVPNV 621

Query: 184 YVFMALINAYTTCGEFEKARQV 205
             +  L+  +   G+ EKA  +
Sbjct: 622 VTYTTLVGGFFKAGKPEKATSI 643



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 90/203 (44%), Gaps = 3/203 (1%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           A++   P   +Y  +I +SC   ++  A + +E+  +  L+P+  +   ++HA  +  ++
Sbjct: 333 AEMGCGPDITTYNTMINFSCKGGRIKEADEFLEKAKERGLLPNKFSYTPLMHAYCKQGDY 392

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
                +   I     KP+  ++ + I   V   + D A  + + + E  + P A +YN +
Sbjct: 393 VKAAGMLFRIAEIGEKPDLVSYGAFIHGVVVHGEIDVALMVREKMMEKGVFPDAQIYNVL 452

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE--DIIKYYEQLKSAGG 179
           M+G  +        ++L EM   NV+PD   F+ L+     N E  + IK ++ +   G 
Sbjct: 453 MSGLCKNGRFPAMKLLLSEMLDRNVQPDVYVFATLMDGFIRNGELDEAIKIFKVIIRKGV 512

Query: 180 QITKYVFMALINAYTTCGEFEKA 202
                 + A+I  +   G+   A
Sbjct: 513 DPGIVGYNAMIKGFCKFGKMTDA 535



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 8/213 (3%)

Query: 43  VPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVK----IKDFD 98
           +P+    NS+L+   +S + ++  ++Y  +   +    +       S+ VK    +   +
Sbjct: 159 LPTVVASNSLLNGLVKSGKVDVALQLYDKMLQTDDGTGAVVDNYTTSIVVKGLCNLGKIE 218

Query: 99  SAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
               L+ D      +P    YN I+ GY +K D+Q A   LKE++   V P  +T+  LI
Sbjct: 219 EGRRLVKDRWGKGCVPHVVFYNMIIDGYCKKGDLQCATRTLKELKMKGVLPTVETYGALI 278

Query: 159 HN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVK 214
           +        E + +   ++ + G  +   VF  +I+A    G   KA + +   AE+   
Sbjct: 279 NGFCKAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAEFKYGLVTKAAETMRRMAEMGCG 338

Query: 215 SRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
                 + +++     GR  +A    E+ KE G
Sbjct: 339 PDITTYNTMINFSCKGGRIKEADEFLEKAKERG 371



 Score = 41.6 bits (96), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 93/250 (37%), Gaps = 44/250 (17%)

Query: 75  HNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEM-NLMPTASMYNAIMAGYFRKKDVQ 133
            +LKP  E F ++I    +    D A  L   ++EM N +PT    N+++ G  +   V 
Sbjct: 120 QHLKPTREAFSALILAYGESGSLDRALQLFHTVREMHNCLPTVVASNSLLNGLVKSGKVD 179

Query: 134 GALMVLKEMEQAN----VKPDSQTFSYLIHNCSN----EED------------------- 166
            AL +  +M Q +       D+ T S ++    N    EE                    
Sbjct: 180 VALQLYDKMLQTDDGTGAVVDNYTTSIVVKGLCNLGKIEEGRRLVKDRWGKGCVPHVVFY 239

Query: 167 --IIKYY-------------EQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AE 210
             II  Y             ++LK  G   T   + ALIN +   GEFE   Q++ + A 
Sbjct: 240 NMIIDGYCKKGDLQCATRTLKELKMKGVLPTVETYGALINGFCKAGEFEAVDQLLTEMAA 299

Query: 211 IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNR 270
             +    +V + ++ A   +G  + A      + E GC  +      +I      G +  
Sbjct: 300 RGLNMNVKVFNNVIDAEFKYGLVTKAAETMRRMAEMGCGPDITTYNTMINFSCKGGRIKE 359

Query: 271 LIQLLEEVHD 280
             + LE+  +
Sbjct: 360 ADEFLEKAKE 369


>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
 gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g31850, chloroplastic; AltName: Full=Protein PROTON
           GRADIENT REGULATION 3; Flags: Precursor
 gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
 gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
 gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
          Length = 1112

 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 110/258 (42%), Gaps = 4/258 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  LI   C   K+  A +V E+M  G   P   T  ++L    ++ + + V++ 
Sbjct: 291 PDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQF 350

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +      P+  TF  ++    K  +F  A+  LD +++  ++P    YN ++ G  R
Sbjct: 351 WSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLR 410

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYV 185
              +  AL +   ME   VKP + T+   I       D +   + +E++K+ G       
Sbjct: 411 VHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVA 470

Query: 186 FMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
             A + +    G   +A+Q+     +I +   S   + ++   +  G   +AI +  E+ 
Sbjct: 471 CNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMM 530

Query: 245 EAGCNLEPRAVIALIEHL 262
           E GC  +   V +LI  L
Sbjct: 531 ENGCEPDVIVVNSLINTL 548



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 94/204 (46%), Gaps = 4/204 (1%)

Query: 6    EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
            + +P++ +Y  LI       +++ A  + E M+     P+    N +++   ++ E +  
Sbjct: 886  DFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAA 945

Query: 66   RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
              ++  +    ++P+ +T+  ++     +   D       +LKE  L P    YN I+ G
Sbjct: 946  CALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIING 1005

Query: 126  YFRKKDVQGALMVLKEMEQA-NVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQI 181
              +   ++ AL++  EM+ +  + PD  T++ LI N       E+  K Y +++ AG + 
Sbjct: 1006 LGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEP 1065

Query: 182  TKYVFMALINAYTTCGEFEKARQV 205
              + F ALI  Y+  G+ E A  V
Sbjct: 1066 NVFTFNALIRGYSLSGKPEHAYAV 1089



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 127/310 (40%), Gaps = 53/310 (17%)

Query: 5    LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
            L + P   +Y  LI    +   + +A DV  Q+     +P   T N +L A  +S + + 
Sbjct: 779  LGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDE 838

Query: 65   VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL-KEMNLMPTA------- 116
            +  +Y  +  H  + N+ T   +IS  VK  + D A  L  DL  + +  PTA       
Sbjct: 839  LFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLI 898

Query: 117  ----------------------------SMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
                                        ++YN ++ G+ +  +   A  + K M +  V+
Sbjct: 899  DGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVR 958

Query: 149  PDSQTFSYLIHNC----SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204
            PD +T+S L+ +C       ++ + Y+++LK +G       +  +IN        E+A  
Sbjct: 959  PDLKTYSVLV-DCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEA-- 1015

Query: 205  VVLDAEIPVKSRS-----EVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--A 257
            +VL  E+   SR         ++L+  L   G   +A  +Y EI+ AG  LEP      A
Sbjct: 1016 LVLFNEMKT-SRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAG--LEPNVFTFNA 1072

Query: 258  LIEHLNSEGE 267
            LI   +  G+
Sbjct: 1073 LIRGYSLSGK 1082



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 1/125 (0%)

Query: 42  LVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAY 101
           LVP + T N ++    +  E +   ++   +  +  +P+     S+I+   K    D A+
Sbjct: 499 LVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAW 558

Query: 102 SLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN- 160
            +   +KEM L PT   YN ++AG  +   +Q A+ + + M Q    P++ TF+ L    
Sbjct: 559 KMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCL 618

Query: 161 CSNEE 165
           C N+E
Sbjct: 619 CKNDE 623



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 42/223 (18%), Positives = 94/223 (42%), Gaps = 14/223 (6%)

Query: 34  VEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVK 93
           + +M +   V +  + N ++H   +S        +Y  +     +P+ +T+ S++    K
Sbjct: 176 LRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGK 235

Query: 94  IKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQT 153
            +D DS   LL +++ + L P    +   +    R   +  A  +LK M+     PD  T
Sbjct: 236 RRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVT 295

Query: 154 FSYLIH--------NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           ++ LI         +C+ E      +E++K+   +  +  ++ L++ ++   + +  +Q 
Sbjct: 296 YTVLIDALCTARKLDCAKE-----VFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQF 350

Query: 206 VLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAG 247
             + E        V  + LV AL   G   +A    + +++ G
Sbjct: 351 WSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQG 393



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 72/351 (20%), Positives = 139/351 (39%), Gaps = 16/351 (4%)

Query: 80  NSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVL 139
           N+ ++  +I L +K +    A  +   +      P+   Y+++M G  +++D+   + +L
Sbjct: 187 NAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLL 246

Query: 140 KEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK-----SAGGQITKYVFMALINAYT 194
           KEME   +KP+  TF+  I        I + YE LK       G  +  Y    LI+A  
Sbjct: 247 KEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYT--VLIDALC 304

Query: 195 TCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAII-VYEEIKEAGCNLEPR 253
           T  + + A++V    +        V    +    S  R  D++   + E+++ G   +  
Sbjct: 305 TARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVV 364

Query: 254 AVIALIEHLNSEGELNRLIQLLEEVHDPDYW--MDGCCRLILHCVRFKQLSSATDLLKQL 311
               L++ L   G        L+ + D      +     LI   +R  +L  A +L   +
Sbjct: 365 TFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNM 424

Query: 312 KDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGAC 371
           +             F + + +       D    L+  + +K + G+ P+    +  L + 
Sbjct: 425 ESLGVKPTAYTYIVFIDYYGKSG-----DSVSALETFEKMKTK-GIAPNIVACNASLYSL 478

Query: 372 VNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
             A   + A  I+   ++ GL  + ++Y  M K +   G    A KLLS+M
Sbjct: 479 AKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEM 529



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 51/275 (18%), Positives = 119/275 (43%), Gaps = 25/275 (9%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           K++ A +++++M      P   T   ++ A   + + +  + ++  +     KP+  T+ 
Sbjct: 273 KINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYI 332

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           +++      +D DS      ++++   +P    +  ++    +  +   A   L  M   
Sbjct: 333 TLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQ 392

Query: 146 NVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGE---- 198
            + P+  T++ LI         +D ++ +  ++S G + T Y ++  I+ Y   G+    
Sbjct: 393 GILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSA 452

Query: 199 ---FEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255
              FEK +   +   I   + S      + +LA  GR  +A  ++  +K+ G  L P +V
Sbjct: 453 LETFEKMKTKGIAPNIVACNAS------LYSLAKAGRDREAKQIFYGLKDIG--LVPDSV 504

Query: 256 I--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC 288
               +++  +  GE++  I+LL E+ +     +GC
Sbjct: 505 TYNMMMKCYSKVGEIDEAIKLLSEMME-----NGC 534



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/133 (21%), Positives = 59/133 (44%), Gaps = 1/133 (0%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           +V  A  +  +M + +L P+  T N++L    ++ +      ++  +      PN+ TF 
Sbjct: 553 RVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFN 612

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           ++     K  +   A  +L  + +M  +P    YN I+ G  +   V+ A+    +M++ 
Sbjct: 613 TLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKL 672

Query: 146 NVKPDSQTFSYLI 158
            V PD  T   L+
Sbjct: 673 -VYPDFVTLCTLL 684



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 32/153 (20%), Positives = 66/153 (43%), Gaps = 3/153 (1%)

Query: 7    ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
            + P   +Y  L+   C + +V   L   +++ +  L P     N I++   +S+      
Sbjct: 957  VRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEAL 1016

Query: 67   RIY-PMICHHNLKPNSETFRSMISLNVKIKDF-DSAYSLLDDLKEMNLMPTASMYNAIMA 124
             ++  M     + P+  T+ S+I LN+ I    + A  + ++++   L P    +NA++ 
Sbjct: 1017 VLFNEMKTSRGITPDLYTYNSLI-LNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIR 1075

Query: 125  GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYL 157
            GY      + A  V + M      P++ T+  L
Sbjct: 1076 GYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108



 Score = 38.1 bits (87), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 26/154 (16%), Positives = 68/154 (44%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           + + P S +Y  ++     + ++  A+ ++ +M++    P    +NS+++   ++   + 
Sbjct: 497 IGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDE 556

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
             +++  +    LKP   T+ ++++   K      A  L + + +    P    +N +  
Sbjct: 557 AWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFD 616

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
              +  +V  AL +L +M      PD  T++ +I
Sbjct: 617 CLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTII 650


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 119/277 (42%), Gaps = 14/277 (5%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           PS+ +Y ++I   C +  +  A+ + ++M++    P+  T N++++   +    N   R+
Sbjct: 410 PSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRL 469

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
             ++  + LKP++ T+  +IS   +    + A SL   + E  + P    Y AI+ GYF 
Sbjct: 470 LEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFN 529

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMA 188
              V  AL +  +M ++   P SQT++ +I   S    I     + ++  G++ K   + 
Sbjct: 530 LAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSI----SEAENFCGKMVKQGLLP 585

Query: 189 LINAYTT-----CGEFEKARQVVLDAEIPVKS---RSEVKSALVSALASHGRTSDAII-- 238
            +  YT+     C          +  E+  ++        S+L+  L   GR  DA +  
Sbjct: 586 NVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYN 645

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLL 275
           +   +   GC         L++ L  EG      QL+
Sbjct: 646 LLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLV 682



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/298 (20%), Positives = 135/298 (45%), Gaps = 15/298 (5%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P+  +Y   +   CD      A++++ +M +   VP+ +T  +++       +F +  
Sbjct: 303 IEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAI 362

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +Y  +    L P + T+ ++I+       F++A+++   +     +P+   YN I+  +
Sbjct: 363 GLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCF 422

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-C--SNEEDIIKYYEQLKSAGGQITK 183
               D+Q A+++  +M +A   P+  T++ LI+  C   N  + ++  E +K  G +   
Sbjct: 423 CLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDA 482

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           + +  LI+ ++  G+ E A  +     E  +       +A++    +  +  DA+ ++ +
Sbjct: 483 WTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWK 542

Query: 243 IKEAGCNLEP----RAVIALIEHLNS----EGELNRLIQ--LLEEVHDPDYWMDGCCR 290
           + E+G NL        +I+     NS    E    ++++  LL  V     ++DG CR
Sbjct: 543 MVESG-NLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCR 599



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/285 (19%), Positives = 122/285 (42%), Gaps = 14/285 (4%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  ++  LI+      K  +A+ +  +M+   LVP+T T N++++       F     I
Sbjct: 340 PNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTI 399

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +  H   P+++T+  +I     + D   A  + D + +    P    YN ++ GY +
Sbjct: 400 FKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCK 459

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYV 185
           + ++  A+ +L+ M+   +KPD+ T++ LI   S     E     +  +   G       
Sbjct: 460 QGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVT 519

Query: 186 FMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
           + A+I+ Y    + + A     ++V    +P    S+  + ++S  +     S+A     
Sbjct: 520 YTAIIDGYFNLAKVDDALALFWKMVESGNLP---SSQTYNVMISGFSKTNSISEAENFCG 576

Query: 242 EIKEAGCNLEPRAV--IALIEHLNSEGELNRLIQLLEEVHDPDYW 284
           ++ + G  L P  +   + I+ L   G      ++  E+   +Y+
Sbjct: 577 KMVKQG--LLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYF 619



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 93/472 (19%), Positives = 185/472 (39%), Gaps = 57/472 (12%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           +++K +   +  S+  L+        V +A D+  +M+   + PS  T N++++   +  
Sbjct: 157 INSKYDFGYTLCSFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKG 216

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
                + I   I  ++  PN+ T+ S+I  + +  + D A+++ D + +    P +  Y+
Sbjct: 217 RVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYS 276

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI-----HNCSNEEDIIKYYEQLK 175
            ++ G   +  ++ A+ +L+EM Q  ++P   T++  +       CS+E   ++   ++K
Sbjct: 277 TLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEA--VELLGKMK 334

Query: 176 SAGGQITKYVFMALINAYTTCGEFEKA----RQVVLDAEIP-------------VKSRSE 218
             G       F ALI+  +  G+FE A     +++ D  +P             V+ R E
Sbjct: 335 KRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFE 394

Query: 219 VKSALVSALASHGR-------------------TSDAIIVYEEIKEAGCNLEPRAVIALI 259
               +   + SHG                       A+++++++ +AG +        LI
Sbjct: 395 TAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLI 454

Query: 260 EHLNSEGELNRLIQLLEEVHD----PDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKF 315
                +G LN  ++LLE +      PD W      LI    R  +L  AT L   + +  
Sbjct: 455 YGYCKQGNLNNAMRLLEIMKGNGLKPDAWTY--TELISGFSRGGKLEHATSLFYGMMEHG 512

Query: 316 KDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIK-DELGLPPSRKCLDFLLGACVNA 374
                       + +  +A  D         L  F K  E G  PS +  + ++      
Sbjct: 513 ISPNHVTYTAIIDGYFNLAKVDDA-------LALFWKMVESGNLPSSQTYNVMISGFSKT 565

Query: 375 RDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDD 426
             +  A     +    GL  NV++Y         +G    A K+  +M K +
Sbjct: 566 NSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRN 617



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 30/147 (20%), Positives = 66/147 (44%), Gaps = 10/147 (6%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYE 61
            K  + P+  +Y   I   C   +  +A  +  +M +    P+  T +S+++  C+E   
Sbjct: 579 VKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRA 638

Query: 62  -----FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTA 116
                +NL+ R+     H+  +PN +T+ +++           A  L+  +++  L P+ 
Sbjct: 639 EDAEMYNLLARL----THYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSE 694

Query: 117 SMYNAIMAGYFRKKDVQGALMVLKEME 143
            +Y A++ G  +   V+ AL +   M+
Sbjct: 695 EIYRALLIGECKNLKVESALNIFYSMD 721


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 116/246 (47%), Gaps = 12/246 (4%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +I     + +   AL + E M +  + P+  TI S+L AC +S   +L   +   I
Sbjct: 228 SWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWI 287

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               L  N +   ++I +  K  D  +A  L DD+ E +++     +N ++ GY      
Sbjct: 288 EDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVIS----WNVMIGGYTHMCSY 343

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCS--NEEDIIKY-YEQLKSAGGQITKYVFMAL 189
           + AL + +EM  + V+P   TF  ++ +C+     D+ K+ +  +      ++  +  +L
Sbjct: 344 KEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSL 403

Query: 190 INAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
           I+ Y  CG    ARQ V D  + +KS +   +A++  LA HG+   A  ++ ++   G  
Sbjct: 404 IDLYAKCGNIVAARQ-VFDG-MKIKSLASW-NAMICGLAMHGQADKAFELFSKMSSDG-- 458

Query: 250 LEPRAV 255
           +EP  +
Sbjct: 459 IEPNEI 464



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 81/191 (42%), Gaps = 43/191 (22%)

Query: 96  DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFS 155
           D   A SL + ++E NL     ++N+++ G         AL+    M  + V+P+S TF 
Sbjct: 78  DISYAISLFNSIEEPNLF----IWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFP 133

Query: 156 YLIHNCSN-------------------------EEDIIKYYEQLKSAGGQITKY------ 184
           +L+ +C+                             +I  Y Q          +      
Sbjct: 134 FLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFR 193

Query: 185 ---VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
               F ALI  Y   G  ++ARQ  L  E+PVK      +A+++  A  GR+ +A++++E
Sbjct: 194 DAISFTALIAGYALWGYMDRARQ--LFDEMPVKDVVSW-NAMIAGYAQMGRSKEALLLFE 250

Query: 242 EIKEAGCNLEP 252
           ++++A  N+ P
Sbjct: 251 DMRKA--NVPP 259



 Score = 45.4 bits (106), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 98/228 (42%), Gaps = 16/228 (7%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL +  +M+   + P+  T  SIL +C      +L + I+  I  +    ++    S+I 
Sbjct: 346 ALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLID 405

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           L  K  +  +A  + D +K    + + + +NA++ G         A  +  +M    ++P
Sbjct: 406 LYAKCGNIVAARQVFDGMK----IKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEP 461

Query: 150 DSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYV-----FMALINAYTTCGEFEKARQ 204
           +  TF  ++  C +   ++   +Q  S+  Q  K       +  +I+     G FE+A  
Sbjct: 462 NEITFVGILSACKH-AGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAES 520

Query: 205 VVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP 252
           ++ + E  VK    +  +L+ A   HGR     +V E + E    LEP
Sbjct: 521 LLQNME--VKPDGAIWGSLLGACRDHGRVELGELVAERLFE----LEP 562


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 60/276 (21%), Positives = 125/276 (45%), Gaps = 4/276 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   SY  +I   C   ++   L ++++M    L P+  T NSI+    +S + +   R+
Sbjct: 8   PDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERV 67

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              + +  + P++  + ++I    K+ +  +AY L D++++  ++P    Y A++ G  R
Sbjct: 68  LREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCR 127

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYV 185
              +  A  V  +M    V+PD  T++ LI   C +   E     + Q+  +G       
Sbjct: 128 CGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVT 187

Query: 186 FMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           + AL +     G+ + A +++ +     ++      ++LV+ L   G    A+ + EE++
Sbjct: 188 YTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEME 247

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
            AG   +      L++     GE+ +  +LL E+ D
Sbjct: 248 VAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLD 283



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 92/206 (44%), Gaps = 3/206 (1%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  I P   +Y  +I   C   K+  A  V  +M    + P   T  +++    +S E  
Sbjct: 108 KQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEME 167

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               ++  +    L PN  T+ ++     K+   D+A  LL ++    L      YN+++
Sbjct: 168 KAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLV 227

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA---GGQ 180
            G  +  +++ A+ +++EME A + PD+ TF+ L+       +++K +E L+     G Q
Sbjct: 228 NGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQ 287

Query: 181 ITKYVFMALINAYTTCGEFEKARQVV 206
            T   F  L+N +   G  E   +++
Sbjct: 288 PTVITFNVLMNGFCMSGMLEDGERLL 313



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 90/203 (44%), Gaps = 3/203 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P +  Y  LI   C L  +  A  + ++M +  +VP      +++       +     
Sbjct: 76  IVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEAD 135

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++  +    ++P+  T+ ++I    K  + + A+SL + + +  L P    Y A+  G 
Sbjct: 136 KVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGL 195

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITK 183
            +   V  A  +L EM    ++ +  T++ L++      +I   +K  E+++ AG     
Sbjct: 196 CKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDT 255

Query: 184 YVFMALINAYTTCGEFEKARQVV 206
             F  L++AY   GE  KA +++
Sbjct: 256 ITFTTLMDAYCKTGEMVKAHELL 278



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 65/146 (44%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  L+   C    +  A+ ++E+M    + P T T  +++ A  ++ E      +   +
Sbjct: 222 TYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREM 281

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               L+P   TF  +++        +    LL  + E  +MP  + YN++M  Y  + ++
Sbjct: 282 LDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNM 341

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLI 158
           +    + K M    V PDS T++ LI
Sbjct: 342 RCTTEIYKGMCARGVMPDSNTYNILI 367



 Score = 46.2 bits (108), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 54/279 (19%), Positives = 118/279 (42%), Gaps = 12/279 (4%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           +TP+  +Y  L    C L +V  A +++ +M    L  +  T NS+++   +S       
Sbjct: 181 LTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAV 240

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           ++   +    + P++ TF +++    K  +   A+ LL ++ +  L PT   +N +M G+
Sbjct: 241 KLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGF 300

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFS-----YLIHNCSNEEDIIKYYEQLKSAGGQI 181
                ++    +L  M +  + P++ T++     Y I N  N     + Y+ + + G   
Sbjct: 301 CMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRN--NMRCTTEIYKGMCARGVMP 358

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRT---SDAII 238
               +  LI  +      ++A    L  E+  K  +   S+  S +    +    S+A  
Sbjct: 359 DSNTYNILIKGHCKARNMKEAW--FLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEARE 416

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEE 277
           ++EE++  G   +       ++    EG +   ++L +E
Sbjct: 417 LFEEMRREGMAADAEIYNLFVDISYGEGNMETALELCDE 455


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 108/238 (45%), Gaps = 6/238 (2%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL    +M +  + P T + N +LH      + + ++R +  +     KP   T+  MI 
Sbjct: 82  ALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRFFKDMIGAGSKPTVFTYNIMID 141

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              K  D ++A  L +++K   L+P    YN+++ GY +   +   +   +EM+  + +P
Sbjct: 142 CMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEP 201

Query: 150 DSQTFSYLIHNC----SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           D  T++ LI NC          ++++ ++K +G +     +  L++A+      ++A + 
Sbjct: 202 DVITYNTLI-NCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKF 260

Query: 206 VLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
            +D   + +       ++LV A    G  SDA  + +E+ + G         ALI+ L
Sbjct: 261 YVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGL 318



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/319 (18%), Positives = 138/319 (43%), Gaps = 10/319 (3%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +  + P + S   L+     L K        + M+     P+  T N ++    +  +  
Sbjct: 91  RCRVFPKTRSCNGLLHKFARLGKTDGMKRFFKDMIGAGSKPTVFTYNIMIDCMCKEGDIE 150

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               ++  +    L P++ T+ SMI    K+   D      +++K M+  P    YN ++
Sbjct: 151 AASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLI 210

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQ 180
             + +   +   L   +EM+Q+ +KP+  ++S L+     E   +  +K+Y  ++  G  
Sbjct: 211 NCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLV 270

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
             ++ + +L++AY   G    A ++  + +++ V+      +AL+  L    R  +A  +
Sbjct: 271 PNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEEL 330

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYWMDGCCRLILHC 295
           + ++  AG      +  ALI        ++R ++LL+E+      PD  + G    I   
Sbjct: 331 FGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGT--FIWSL 388

Query: 296 VRFKQLSSATDLLKQLKDK 314
              +++ +A  ++ ++++K
Sbjct: 389 CGLEKIEAAKVVMNEMQEK 407



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 105/225 (46%), Gaps = 10/225 (4%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVRR 67
           P   +Y  LI   C   K+   L+   +M Q  L P+  + ++++ A C+E        +
Sbjct: 201 PDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDM-MQQALK 259

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
            Y  +    L PN  T+ S++    KI +   A+ L D++ ++ +      Y A++ G  
Sbjct: 260 FYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLC 319

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKY 184
             + ++ A  +  +M  A V P+  +++ LIH      N +  ++  +++K  G +    
Sbjct: 320 DVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLL 379

Query: 185 VFMALINAYTTCG-EFEKARQVVLD--AEIPVKSRSEVKSALVSA 226
           ++   I  ++ CG E  +A +VV++   E  +K+ + + + L+ A
Sbjct: 380 LYGTFI--WSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDA 422



 Score = 45.8 bits (107), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 60/346 (17%), Positives = 129/346 (37%), Gaps = 26/346 (7%)

Query: 79  PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMV 138
           P + +   ++    ++   D       D+      PT   YN ++    ++ D++ A  +
Sbjct: 96  PKTRSCNGLLHKFARLGKTDGMKRFFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGL 155

Query: 139 LKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTT 195
            +EM+   + PD+ T++ +I         +D + ++E++KS   +     +  LIN +  
Sbjct: 156 FEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCK 215

Query: 196 CGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRA 254
            G+  K  +   +  +  +K      S LV A         A+  Y +++  G       
Sbjct: 216 FGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHT 275

Query: 255 VIALIEHLNSEGELNRLIQLLEEVHDPDY-W--------MDGCCRLILHCVRFKQLSSAT 305
             +L++     G L+   +L +E+      W        +DG C +       +++  A 
Sbjct: 276 YTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDV-------ERIKEAE 328

Query: 306 DLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLD 365
           +L  ++        +A        F +    D       L+LL  +K   G+ P      
Sbjct: 329 ELFGKMVTAGVIPNLASYTALIHGFVKAKNMDR-----ALELLDEMKGR-GIKPDLLLYG 382

Query: 366 FLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGN 411
             + +      ++ A ++  E +  G+  N   Y  +  A+  S N
Sbjct: 383 TFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSEN 428



 Score = 42.0 bits (97), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 64/346 (18%), Positives = 111/346 (32%), Gaps = 74/346 (21%)

Query: 79  PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMV 138
           P    F ++ S+ ++   F+ A      +K   + P     N ++  + R     G    
Sbjct: 61  PGFGVFDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRF 120

Query: 139 LKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGE 198
            K+M  A  KP   T++ +I     E DI       ++A G   +  F  LI    T   
Sbjct: 121 FKDMIGAGSKPTVFTYNIMIDCMCKEGDI-------EAASGLFEEMKFRGLIPDTVT--- 170

Query: 199 FEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
                                 ++++      GR  D +  +EE+K   C  EP  +   
Sbjct: 171 ---------------------YNSMIDGYGKVGRLDDTVYFFEEMKSMSC--EPDVIT-- 205

Query: 259 IEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDD 318
                     N LI                        +F +L    +  +++K      
Sbjct: 206 ---------YNTLINCF--------------------CKFGKLPKGLEFFREMKQSGLKP 236

Query: 319 EMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKD--ELGLPPSRKCLDFLLGACVNARD 376
            +       + FC+          +    L+F  D   LGL P+      L+ A     +
Sbjct: 237 NVVSYSTLVDAFCK--------EDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGN 288

Query: 377 LKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           L  A  +  E    G+ +NV++Y  +          K A +L  KM
Sbjct: 289 LSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKM 334


>gi|326510071|dbj|BAJ87252.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 825

 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 93/187 (49%), Gaps = 3/187 (1%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           A   ++P++ ++  LI+  C + +  +AL +++ M +  ++P  +T    + A  +  + 
Sbjct: 363 AGAGLSPNTVTFNSLISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQL 422

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
                ++  +    +K ++  + S++    ++ D DSA+ L++ +   N MP    YN +
Sbjct: 423 EEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYNTL 482

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGG 179
           + G  + K +  A+ +L +M++  ++P + TF+ LI          D  K YEQ+ S+G 
Sbjct: 483 IDGLCKVKRLDRAIDLLDKMKKQGIEPTTCTFNILIKQMLWDKKHADAAKMYEQMISSGC 542

Query: 180 QITKYVF 186
           +  K  +
Sbjct: 543 KPDKQTY 549



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 98/488 (20%), Positives = 178/488 (36%), Gaps = 78/488 (15%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSIL--------------- 53
           P+  +Y  LI   C L  +  A   + +M +  L P T T N ++               
Sbjct: 88  PNRCTYNTLINAHCKLALLADARAALVRMREAGLAPDTFTYNCLMLGLCRAGLLAAACGL 147

Query: 54  --------HACEESYEFNLV-------------RRIYPMICHHNLKPNSETFRSMISLNV 92
                    AC + Y + ++              R++  +     +P   T+  ++    
Sbjct: 148 FVQMPRRWGACYDRYSYTILIKGLCAAGRIDDACRVFAKMSRGWCRPGVHTYTVLLDGLC 207

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
           K++    A +LL ++    ++P    YNA++ G  ++        +L++ME     PD  
Sbjct: 208 KVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQRHSPDCW 267

Query: 153 TFSYLIHNCSNEEDIIKYYEQLKSAGGQ---ITKYVFMALINAYTTCGEFEKARQVV-LD 208
           T++ ++H       +    + L  A G+   +    + ALIN Y   G+ + A  V+ L 
Sbjct: 268 TYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALINGYCKGGDMKAALDVLQLM 327

Query: 209 AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEG 266
               V    +  + ++      G+   A+    ++  AG  L P  V   +LI    S G
Sbjct: 328 KRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQM--AGAGLSPNTVTFNSLISGQCSVG 385

Query: 267 ELN---RLIQLLEEVHD-PD-----YWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKD 317
           E     RL+ L+EE    PD      ++D  C          QL  A  L   L  K   
Sbjct: 386 ERKIALRLLDLMEEYGVLPDRQTYAIFIDALC-------DEGQLEEAHSLFSCLPMKGIK 438

Query: 318 DEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDL 377
               +       +CQ+      D+     L++ +  E  +P        + G C   + L
Sbjct: 439 AHNVIYTSLVHGYCQVG-----DIDSAFGLMEKMASENCMPDVHTYNTLIDGLC-KVKRL 492

Query: 378 KRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQAC- 436
            RA  +  + +  G+     ++  + K  L       A+K+  +M         +   C 
Sbjct: 493 DRAIDLLDKMKKQGIEPTTCTFNILIKQMLWDKKHADAAKMYEQM---------ISSGCK 543

Query: 437 --KQTYTI 442
             KQTYT+
Sbjct: 544 PDKQTYTL 551



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 74/163 (45%), Gaps = 8/163 (4%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  LI   C + ++  A+D++++M +  + P+T T N ++       +     ++
Sbjct: 474 PDVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQGIEPTTCTFNILIKQMLWDKKHADAAKM 533

Query: 69  YPMICHHNLKPNSETFRSMISLN-----VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
           Y  +     KP+ +T+   IS +      K ++ D A   + ++ E  + P    YNAI+
Sbjct: 534 YEQMISSGCKPDKQTYTLKISTDWFEGATKEENIDMA---VVEMHEAGVFPDVETYNAII 590

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED 166
             Y      + A     +M    + PD  T+S L++   N++D
Sbjct: 591 KAYVDAGLKEKAFFAHVKMLSVPIDPDCTTYSILLNYMCNKDD 633


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 129/279 (46%), Gaps = 8/279 (2%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           +P   SY  +I       ++  A ++  +MVQ  +VP+  T NSI+HA  ++   +    
Sbjct: 269 SPDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAEL 328

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +   +  ++++P+  T+ +MI     +  +  A  +  ++    L+P    +N++M    
Sbjct: 329 VLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLC 388

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQITKY 184
           + K  + A  +   +     KPD  ++S L+H  + E    D+   +  +   G     +
Sbjct: 389 KHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSH 448

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSA-LVSALASHGRTSDAIIVYEEI 243
            F  LINA+   G  ++A  +  +      S + V  A +++AL   GR +DA+    ++
Sbjct: 449 CFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQM 508

Query: 244 KEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHD 280
              G  L+P  V+  +LI+   + G+L +  +L+ E+ D
Sbjct: 509 ISIG--LKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMD 545



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 122/307 (39%), Gaps = 46/307 (14%)

Query: 5   LEITPSSASYKKLITYSC---DLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESY 60
           + + P++  Y  LI   C   DL+K      V E M QG   P+    +SI+H+ C E  
Sbjct: 511 IGLKPNTVVYHSLIQGFCTHGDLIKAKEL--VSEMMDQGIPRPNITFFSSIIHSLCNEGR 568

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
             N  + ++ ++ H   +P+  TF S+I     +   D A+ +LD +      P    Y+
Sbjct: 569 VMN-AQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYS 627

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSA 177
            ++ GYF+   +   L++ +EM    VKP + T+S ++             K + ++  +
Sbjct: 628 TLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIES 687

Query: 178 GGQITKYVFMALINAY--TTCGE-----FEKARQVVLDAEIP-----------VKSRSEV 219
           G  ++   +  ++       C +     F K   + L  EI            VK R E 
Sbjct: 688 GTAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEIAILNTMIHALYKVKRREEA 747

Query: 220 KSALVSALAS------------------HGRTSDAIIVYEEIKEAGCNLEPRAVIALIEH 261
                S  AS                   G   +A I++  +++ GC    R +  +I  
Sbjct: 748 HDLFASVSASGLVPNASTYGVMIINLLKEGSVEEADIMFSSMEKTGCAPSSRLLNDIIRM 807

Query: 262 LNSEGEL 268
           L  +GE+
Sbjct: 808 LLQKGEI 814



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/280 (20%), Positives = 124/280 (44%), Gaps = 9/280 (3%)

Query: 6   EITPSSASYKKLI-TYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
            I P   +Y  +I  YSC L +   A  + ++M +  L+P   T NS++ +  +      
Sbjct: 337 SIQPDEVTYTAMIHGYSC-LGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKE 395

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
              I+  I     KP+  ++  ++        F    +L   + +  ++  +  +N ++ 
Sbjct: 396 AAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILIN 455

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQI 181
            + ++  +  AL++  EM    V P+  T++ +I          D ++   Q+ S G + 
Sbjct: 456 AHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKP 515

Query: 182 TKYVFMALINAYTTCGEFEKARQVV---LDAEIPVKSRSEVKSALVSALASHGRTSDAII 238
              V+ +LI  + T G+  KA+++V   +D  IP +      S+++ +L + GR  +A  
Sbjct: 516 NTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIP-RPNITFFSSIIHSLCNEGRVMNAQD 574

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           V+  +   G   +     +LI+     G++++   +L+ +
Sbjct: 575 VFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAM 614



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 49/278 (17%), Positives = 101/278 (36%), Gaps = 42/278 (15%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   ++  L+   C   +   A ++   +      P   + + +LH       F  + 
Sbjct: 373 LIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMN 432

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +  + +  +S  F  +I+ + K    D A  +  +++   + P    Y  ++A  
Sbjct: 433 NLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAAL 492

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA--------- 177
            R   +  A+  L +M    +KP++  +  LI       D+IK  E +            
Sbjct: 493 CRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPN 552

Query: 178 ------------------------------GGQITKYVFMALINAYTTCGEFEKARQVVL 207
                                         G +   + F +LI+ Y   G+ +KA   VL
Sbjct: 553 ITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFG-VL 611

Query: 208 DAEIPVKSRSEVK--SALVSALASHGRTSDAIIVYEEI 243
           DA +   +  +V   S L++     GR  D +I++ E+
Sbjct: 612 DAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREM 649



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 33/176 (18%), Positives = 70/176 (39%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
            + P++ +Y  ++       +   A  +  +M++     S  T   IL     +   +  
Sbjct: 653 RVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTAMSISTYTIILQGLCRNNCTDEA 712

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             ++  +   NLK       +MI    K+K  + A+ L   +    L+P AS Y  ++  
Sbjct: 713 ITLFHKLGAMNLKFEIAILNTMIHALYKVKRREEAHDLFASVSASGLVPNASTYGVMIIN 772

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQI 181
             ++  V+ A ++   ME+    P S+  + +I     + +I+K    +    G I
Sbjct: 773 LLKEGSVEEADIMFSSMEKTGCAPSSRLLNDIIRMLLQKGEIVKAGYYMSKVDGTI 828



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 38/187 (20%), Positives = 77/187 (41%), Gaps = 10/187 (5%)

Query: 114 PTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---Y 170
           P    Y  ++ G F + ++  A  +  EM Q  V P+  T++ ++H       + K    
Sbjct: 270 PDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELV 329

Query: 171 YEQLKSAGGQITKYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSA 226
             Q+     Q  +  + A+I+ Y+  G +++A    +++  +  IP        ++L+ +
Sbjct: 330 LRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIP---DIVTFNSLMDS 386

Query: 227 LASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
           L  H R+ +A  ++  I   G   +  +   L+    +EG    +  L   + D     D
Sbjct: 387 LCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVAD 446

Query: 287 GCCRLIL 293
             C  IL
Sbjct: 447 SHCFNIL 453


>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
 gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
          Length = 991

 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 54/275 (19%), Positives = 118/275 (42%), Gaps = 5/275 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
            TP+  ++  LI   C   K   AL +  +M+  +     +    ++++  +       +
Sbjct: 388 FTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAK 447

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   I  + L PN  T+ S+I    K    D A  +L  ++     P A  YN++M G 
Sbjct: 448 ELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGL 507

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITK 183
            + K +  A+ +L +M++  + P+  T++ L+    +E D     + +E ++  G +  +
Sbjct: 508 VKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDE 567

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
           + +  L +A    G  E+A   ++   + +       + L+   +  G T  A  + E +
Sbjct: 568 HAYAVLTDALCKAGRAEEAYSFIVRKGVALT--KVYYTTLIDGFSKAGNTDFAATLIERM 625

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            + GC  +      L+  L  +  LN  + +L+++
Sbjct: 626 IDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQM 660



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 108/241 (44%), Gaps = 5/241 (2%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A +++ ++    LVP+  T  SI+    +S + ++   +  M+     +PN+ T+ S++ 
Sbjct: 446 AKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMY 505

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
             VK K    A +LL  +++  ++P    Y  ++ G   + D   A  + + MEQ  +KP
Sbjct: 506 GLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKP 565

Query: 150 DSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV--- 206
           D   ++ L           + Y  +   G  +TK  +  LI+ ++  G  + A  ++   
Sbjct: 566 DEHAYAVLTDALCKAGRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERM 625

Query: 207 LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
           +D      S +   S L+ AL    R ++A+ + +++   G      A   LI+ +  EG
Sbjct: 626 IDEGCTPDSYT--YSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREG 683

Query: 267 E 267
           +
Sbjct: 684 K 684



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 96/460 (20%), Positives = 176/460 (38%), Gaps = 57/460 (12%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSI-------------- 52
           + P + +Y  +I   C    +  A      +++G L P T T N++              
Sbjct: 179 LLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKAC 238

Query: 53  -------LHACEES-YEFNL----------VRR---IYPMICHHNLKPNSETFRSMISLN 91
                  L  C+ + Y + +          VR+   ++ M+      PN   F  +IS  
Sbjct: 239 WLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGL 298

Query: 92  VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151
            K      A  L D + +  ++P+   YNA++ GY +   +  AL + + ME+    PD 
Sbjct: 299 CKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDD 358

Query: 152 QTFSYLIHNCSNE--EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA-RQVVLD 208
            T++ LI+   ++  E+  +        G   T   F  LIN Y    +F+ A R     
Sbjct: 359 WTYNTLIYGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKM 418

Query: 209 AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV--IALIEHLNSEG 266
                K   +V   L+++L    R  +A  +  EI   G  L P  +   ++I+     G
Sbjct: 419 MSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANG--LVPNVITYTSIIDGYCKSG 476

Query: 267 ELNRLIQLLEEVH----DPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAM 322
           +++  +++L+ +      P+ W      L+   V+ K+L  A  LL +++   KD  +  
Sbjct: 477 KVDIALEVLKMMERDGCQPNAWTYN--SLMYGLVKDKKLHKAMALLTKMQ---KDGIIPN 531

Query: 323 EYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHL 382
              ++ +       D  D      L + ++   GL P       L  A   A    RA  
Sbjct: 532 VITYTTLL--QGQCDEHDFDNAFRLFEMMEQN-GLKPDEHAYAVLTDALCKA---GRAEE 585

Query: 383 IWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
            +      G+    + Y  +   F  +GN   A+ L+ +M
Sbjct: 586 AYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERM 625



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 136/318 (42%), Gaps = 28/318 (8%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  LI   CD  K   A +++   V+    P+  T  ++++    + +F+   R+
Sbjct: 356 PDDWTYNTLIYGLCDQ-KTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRM 414

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +     K + + F  +I+  +K      A  LL+++    L+P    Y +I+ GY +
Sbjct: 415 KNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCK 474

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMA 188
              V  AL VLK ME+   +P++ T++ L++    ++ + K    L     ++ K   + 
Sbjct: 475 SGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLT----KMQKDGIIP 530

Query: 189 LINAYTT-----CGE--FEKA-RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
            +  YTT     C E  F+ A R   +  +  +K      + L  AL   GR  +A   Y
Sbjct: 531 NVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEA---Y 587

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC------RLILH 294
             I   G  L       LI+  +  G  +    L+E + D     +GC        ++LH
Sbjct: 588 SFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMID-----EGCTPDSYTYSVLLH 642

Query: 295 CV-RFKQLSSATDLLKQL 311
            + + K+L+ A  +L Q+
Sbjct: 643 ALCKQKRLNEALPILDQM 660



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/331 (18%), Positives = 135/331 (40%), Gaps = 42/331 (12%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  +I   C   KV +AL+V++ M +    P+  T NS+++   +  + +   
Sbjct: 458 LVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAM 517

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMP------------ 114
            +   +    + PN  T+ +++       DFD+A+ L + +++  L P            
Sbjct: 518 ALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDAL 577

Query: 115 --------------------TASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTF 154
                               T   Y  ++ G+ +  +   A  +++ M      PDS T+
Sbjct: 578 CKAGRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTY 637

Query: 155 SYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AE 210
           S L+H    ++ +   +   +Q+   G + T + +  LI+     G+ + A+++  +   
Sbjct: 638 SVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTS 697

Query: 211 IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNR 270
              K  +   +  +++    GR  DA  +  +++  G   +      LI+     G ++R
Sbjct: 698 SGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDR 757

Query: 271 LIQLLEEV----HDPDYWMDGCCRLILHCVR 297
               L+ +     +P+YW    C L+ H ++
Sbjct: 758 AFSTLKRMVGASCEPNYWTY--CLLLKHLLK 786



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 93/225 (41%), Gaps = 6/225 (2%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+  + +     L  S +  N  L +         + R+Y  +    L P++ T+ +MI 
Sbjct: 132 AIQAIRRTGSARLALSPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIK 191

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              K  D  +A+     L E  L P     NA++ GY R  +++ A  +   M     + 
Sbjct: 192 SYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQR 251

Query: 150 DSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           +  +++ LI    + + + K    +  +K  G       F  LI+     G    AR ++
Sbjct: 252 NEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDAR-LL 310

Query: 207 LDA--EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
            DA  +  V       +A++   +  GR +DA+ + E +++ GC+
Sbjct: 311 FDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCH 355



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 74/186 (39%), Gaps = 20/186 (10%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSIL-----------HA 55
           + P   +Y  LI     +  +  A   +++MV     P+  T   +L            +
Sbjct: 735 VAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRS 794

Query: 56  CEESYEFNLVR-----RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEM 110
            + S  +NL+      ++   +  H L P   T+ S+I+   K    + A  LLD +   
Sbjct: 795 VDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGK 854

Query: 111 NLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY 170
            L P   +Y  ++      K  + AL  +  M +   +P  +++  L+    NE D    
Sbjct: 855 GLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGD---- 910

Query: 171 YEQLKS 176
           +E++KS
Sbjct: 911 FEKVKS 916


>gi|15237467|ref|NP_199470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180372|sp|Q9LS25.1|PP420_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g46580, chloroplastic; Flags: Precursor
 gi|8885599|dbj|BAA97529.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008017|gb|AED95400.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 711

 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 61/287 (21%), Positives = 133/287 (46%), Gaps = 13/287 (4%)

Query: 13  SYKKLITYS--CDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYP 70
           +Y  +IT +  C+L   + A++  E+M +  L+P   T ++IL    +S +   V  +Y 
Sbjct: 223 TYSTIITCAKRCNL--YNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYE 280

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
                  KP++  F  +  +  +  D+D    +L ++K M++ P   +YN ++    R  
Sbjct: 281 RAVATGWKPDAIAFSVLGKMFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAG 340

Query: 131 DVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFM 187
               A  +  EM +A + P+ +T + L+          D ++ +E++K+    +   ++ 
Sbjct: 341 KPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARWARDALQLWEEMKAKKWPMDFILYN 400

Query: 188 ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEIKE 245
            L+N     G  E+A ++  D +  V+ R +  S  A+++   S G+   A+ ++EE+ +
Sbjct: 401 TLLNMCADIGLEEEAERLFNDMKESVQCRPDNFSYTAMLNIYGSGGKAEKAMELFEEMLK 460

Query: 246 AGCNLEPRAVIALIEHLNSEGELNRLIQL----LEEVHDPDYWMDGC 288
           AG  +       L++ L     ++ ++ +    ++    PD  + GC
Sbjct: 461 AGVQVNVMGCTCLVQCLGKAKRIDDVVYVFDLSIKRGVKPDDRLCGC 507



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/245 (20%), Positives = 107/245 (43%), Gaps = 9/245 (3%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  + P   +Y  ++       KV   L + E+ V     P     + +     E+ +++
Sbjct: 249 KTGLMPDEVTYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGDYD 308

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
            +R +   +   ++KPN   + +++    +      A SL +++ E  L P      A++
Sbjct: 309 GIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALV 368

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLK-SAGG 179
             Y + +  + AL + +EM+      D   ++ L++ C++   EE+  + +  +K S   
Sbjct: 369 KIYGKARWARDALQLWEEMKAKKWPMDFILYNTLLNMCADIGLEEEAERLFNDMKESVQC 428

Query: 180 QITKYVFMALINAYTTCGEFEKARQV---VLDAEIPVKSRSEVKSALVSALASHGRTSDA 236
           +   + + A++N Y + G+ EKA ++   +L A + V       + LV  L    R  D 
Sbjct: 429 RPDNFSYTAMLNIYGSGGKAEKAMELFEEMLKAGVQVNVMG--CTCLVQCLGKAKRIDDV 486

Query: 237 IIVYE 241
           + V++
Sbjct: 487 VYVFD 491



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 91/204 (44%), Gaps = 6/204 (2%)

Query: 47  ETI--NSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLL 104
           ETI  N  + +     +F L+  +   +    ++ ++ T+ ++I+   +   ++ A    
Sbjct: 185 ETIFYNVTMKSLRFGRQFQLIEEMALEMVKDGVELDNITYSTIITCAKRCNLYNKAIEWF 244

Query: 105 DDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYL--IHNCS 162
           + + +  LMP    Y+AI+  Y +   V+  L + +       KPD+  FS L  +   +
Sbjct: 245 ERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEA 304

Query: 163 NEEDIIKYY-EQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVK 220
            + D I+Y  +++KS   +    V+  L+ A    G+   AR +  +  E  +    +  
Sbjct: 305 GDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTL 364

Query: 221 SALVSALASHGRTSDAIIVYEEIK 244
           +ALV          DA+ ++EE+K
Sbjct: 365 TALVKIYGKARWARDALQLWEEMK 388


>gi|357122825|ref|XP_003563115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Brachypodium distachyon]
          Length = 410

 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 124/287 (43%), Gaps = 10/287 (3%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L +TP+  ++  LI       +    L + E+M  G + P+  T N ++     + EF 
Sbjct: 66  RLGLTPNEVTFTALIHGYFIHGRREKGLALFEKMRIGGIEPNLYTYNILVGEWCRTGEFE 125

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             R ++  +    +  N  ++ ++I+   + +    A  LL+ ++   + P+   +N ++
Sbjct: 126 RARLLFEEMPAKGITRNVVSYNTLIAGLCRYRKMKDATQLLELMRREGIRPSVVTFNLLV 185

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQ 180
            GY +   +  AL    +M  A  +P + T++ LI       D+I   + +  +K  G  
Sbjct: 186 DGYGKAGKMSNALHFSNQMRMAGYQPSAVTYNALIAGFCRARDMIRANRAFSDMKERGLA 245

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK----SALVSALASHGRTSDA 236
            TK  +  LI+A+    + +KA ++    E   K+  EV       LV AL   G   DA
Sbjct: 246 PTKVTYTILIDAFARENDMDKAFEMFAGME---KAGLEVDVRTYGVLVHALCMEGNMKDA 302

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY 283
             +++ I E G  +       LI     EG   + ++L+ E+    +
Sbjct: 303 RKLFQSIGEKGLQVGNVIYDMLIYGYGREGSSYKAMKLIMEMRKKGF 349



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 128/322 (39%), Gaps = 51/322 (15%)

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKS 176
            A++ GY R  DV  A  V   M +  + P+  TF+ LIH        E  +  +E+++ 
Sbjct: 42  TALVHGYCRSGDVAEAQRVFDVMPRLGLTPNEVTFTALIHGYFIHGRREKGLALFEKMRI 101

Query: 177 AGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVK--SRSEVK-SALVSALASHGRT 233
            G +   Y +  L+  +   GEFE+AR  +L  E+P K  +R+ V  + L++ L  + + 
Sbjct: 102 GGIEPNLYTYNILVGEWCRTGEFERAR--LLFEEMPAKGITRNVVSYNTLIAGLCRYRKM 159

Query: 234 SDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRL 291
            DA  + E ++  G  + P  V    L++     G+++  +    ++    Y        
Sbjct: 160 KDATQLLELMRREG--IRPSVVTFNLLVDGYGKAGKMSNALHFSNQMRMAGYQPSA---- 213

Query: 292 ILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFI 351
           + +         A D+++  +             FS++                      
Sbjct: 214 VTYNALIAGFCRARDMIRANR------------AFSDM---------------------- 239

Query: 352 KDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGN 411
             E GL P++     L+ A     D+ +A  ++   E AGL  +V +Y  +  A    GN
Sbjct: 240 -KERGLAPTKVTYTILIDAFARENDMDKAFEMFAGMEKAGLEVDVRTYGVLVHALCMEGN 298

Query: 412 RKSASKLLSKMPKDDPHVRFVI 433
            K A KL   + +    V  VI
Sbjct: 299 MKDARKLFQSIGEKGLQVGNVI 320


>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
 gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
          Length = 728

 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 65/317 (20%), Positives = 143/317 (45%), Gaps = 6/317 (1%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K+ +  ++ S+  LI  SC   +   A+ V+ +M      P   T N+IL    +    N
Sbjct: 190 KIGVKINTNSFNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLN 249

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             R +   + +  L PN  TF  ++    ++     A ++++ + + +++P A  YN ++
Sbjct: 250 EARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMI 309

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQ 180
           +G+ ++  +  A+ + +EME   + PD  T++ LI+ C    + E+  K  E+++  G +
Sbjct: 310 SGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMK 369

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIV 239
                +  ++  +   G+ ++  + V   E        V  + L+S     G+  +A  +
Sbjct: 370 PNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRL 429

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVR 297
            +E+   G  ++   +  ++  L  E +L+    LL       Y++D      LI+   +
Sbjct: 430 MDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFK 489

Query: 298 FKQLSSATDLLKQLKDK 314
            ++ S A  L  ++K+K
Sbjct: 490 HEKASQALRLWDEMKEK 506



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 94/442 (21%), Positives = 179/442 (40%), Gaps = 52/442 (11%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P + +Y  +I+  C   ++  A+ + E+M   +L P   T N++++ C E        
Sbjct: 298 VVPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGF 357

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           ++   +    +KPNS T+  M+   VK    D     +  ++E   +P    YN +++ +
Sbjct: 358 KLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWH 417

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA---GGQITK 183
            +   +  A  ++ EM +  +K D  T + ++     E  + + ++ L SA   G  + +
Sbjct: 418 CKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDE 477

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS-----ALVSALASHGRTSDAII 238
             +  LI  Y    + EKA Q  L     +K +  + S     ++++ L   G+T+ AI 
Sbjct: 478 VSYGTLIIGYF---KHEKASQA-LRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAID 533

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD--GCCRLILHCV 296
             +E+ E+G   +      +I     EG++ +  Q   ++ + ++  D   C  L+    
Sbjct: 534 KLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLC 593

Query: 297 RFKQLSSATDLLKQLKDKFKDDE----------MAMEYHFSEIFCQIATTDPPDVQIGLD 346
           +   L  A  L      K KD +          +  E  F E F               D
Sbjct: 594 KEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLCKEKRFGEAF---------------D 638

Query: 347 LLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAF 406
           LL+ + +E  L P     + +LG   +A  +K A     +    G   N          F
Sbjct: 639 LLEEM-EEKKLGPDCYTYNAILGGLTDAGRMKDAEEFISKIAEKGKSEN---------QF 688

Query: 407 LASGNRKSASKLLSKMPKDDPH 428
           L  G R+ A    S++P+ +PH
Sbjct: 689 LELGKRQDART--SEIPQ-EPH 707



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 104/240 (43%), Gaps = 28/240 (11%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNL 64
           EI PS  +Y  +I   C + K + A+D ++++++  LVP   T N+I+H  C+E  +   
Sbjct: 507 EIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEG-QVEK 565

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
             + +  +   N KP+  T  +++    K    + A  L +          A  YN I+ 
Sbjct: 566 AFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIIL 625

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN-------EEDIIKYYEQLKSA 177
              ++K    A  +L+EME+  + PD  T++ ++   ++       EE I K  E+ KS 
Sbjct: 626 SLCKEKRFGEAFDLLEEMEEKKLGPDCYTYNAILGGLTDAGRMKDAEEFISKIAEKGKSE 685

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE--VKSALVSALASHGRTSD 235
                        N +   G+ + AR     +EIP +        S  ++ L S GR  D
Sbjct: 686 -------------NQFLELGKRQDART----SEIPQEPHPNAIAYSNKINELCSQGRYKD 728



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 48/262 (18%), Positives = 114/262 (43%), Gaps = 14/262 (5%)

Query: 28  HVALDVVEQMVQGELVPSTETINSILHAC---EESYEFNLVRRIYPMICHHNLKPNSETF 84
           H A  +  +M +  + P+  T N++L+A      S+   L + ++       +K N+ +F
Sbjct: 141 HQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFTDFIKIGVKINTNSF 200

Query: 85  RSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQ 144
             +I  +     F  A  +L  +++    P    YN I+ G  +K  +  A  +L +M+ 
Sbjct: 201 NILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEARDLLLDMKN 260

Query: 145 ANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEK 201
             + P+  TF+ L+  C      ++     E +         + +  +I+ +   G   +
Sbjct: 261 KGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAE 320

Query: 202 ARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--AL 258
           A ++  + E + +       + L++    HG + +   + EE++  G  ++P +V    +
Sbjct: 321 AMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRG--MKPNSVTYNVM 378

Query: 259 IEHLNSEG---ELNRLIQLLEE 277
           ++    +G   E+++ ++ +EE
Sbjct: 379 VKWFVKKGKMDEVDKTVRKMEE 400


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 77/369 (20%), Positives = 152/369 (41%), Gaps = 63/369 (17%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           I+P+  +Y  LI   C L +      ++ +MV  +++P   T+N+++ A C+E       
Sbjct: 241 ISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAE-A 299

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +  M+ H  ++PN  T+ +++  +    + D A  + D +   + +     YN ++ G
Sbjct: 300 HDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLING 359

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQIT 182
           Y + + V  A+ + +EM +  + P++ T++ LIH   +    +D I  + ++  A GQI 
Sbjct: 360 YCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEM-VARGQIP 418

Query: 183 KYVF-----------------MALINA------------YTT-------CGEFEKARQVV 206
             V                  MAL+ A            YTT        GE E AR + 
Sbjct: 419 DLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLF 478

Query: 207 LD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
            + +   ++      + ++  L   G  ++A  ++ E+ + GC+        +       
Sbjct: 479 SNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRN 538

Query: 266 GELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYH 325
            E  R I+LLEE+    + +D              +S+ T L+  L D        ++  
Sbjct: 539 NEALRTIELLEEMLARGFSVD--------------VSTTTLLVGMLSDD------GLDQS 578

Query: 326 FSEIFCQIA 334
             +I C+I 
Sbjct: 579 VKQILCKIV 587



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 134/324 (41%), Gaps = 30/324 (9%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  LI   C +     A+ ++  M QG   P+    ++++ +  +  +      I
Sbjct: 173 PNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNI 232

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    + PN  T+ S+I    K+ ++    +L++++ +  +MP     N ++    +
Sbjct: 233 FSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCK 292

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLI--HNCSNEEDI-IKYYEQLKSAGGQITKYV 185
           +  V  A  V+  M    V+P+  T++ L+  H   NE D+ +K ++ +           
Sbjct: 293 EGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVIS 352

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK------SALVSALASHGRTSDAIIV 239
           +  LIN Y      +KA  +  +      SR E+       + L+  L   GR  DAI +
Sbjct: 353 YNTLINGYCKIQSVDKAMYLFEEM-----SRQELTPNTVTYNTLIHGLCHVGRLQDAISL 407

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDYW-----MDGCCR 290
           + E+   G   +      L ++L     L++ + LL+ +     DPD       +DG CR
Sbjct: 408 FHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCR 467

Query: 291 LILHCVRFKQLSSATDLLKQLKDK 314
                    +L  A DL   L  K
Sbjct: 468 A-------GELEDARDLFSNLSSK 484



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/207 (17%), Positives = 88/207 (42%), Gaps = 3/207 (1%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           ++ E+TP++ +Y  LI   C + ++  A+ +  +MV    +P   T  ++     ++   
Sbjct: 377 SRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHL 436

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           +    +   I   N  P+ + + +++    +  + + A  L  +L    L P    YN +
Sbjct: 437 DKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIM 496

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEEDI--IKYYEQLKSAGG 179
           + G  ++  +  A  +  EM +    P+  T++ +      N E +  I+  E++ + G 
Sbjct: 497 IHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGF 556

Query: 180 QITKYVFMALINAYTTCGEFEKARQVV 206
            +       L+   +  G  +  +Q++
Sbjct: 557 SVDVSTTTLLVGMLSDDGLDQSVKQIL 583


>gi|297798862|ref|XP_002867315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313151|gb|EFH43574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 119/263 (45%), Gaps = 21/263 (7%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEE-SYEFNLVRRIYPM 71
           S+  +I+         V +D    M +  L P+  T+ S+L AC E  Y   LV+ I+  
Sbjct: 218 SWTAMISGCVANYNYEVGIDFFRAMQRENLRPNRVTLLSVLPACVELGYGLRLVKEIHGF 277

Query: 72  ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131
              H    +     + +++  +      + SL   L E + +    M++++++GY    D
Sbjct: 278 SFRHGFHSDDRLIAAFMTMYCRC----GSVSLSRLLFETSKVRDVVMWSSMISGYAENGD 333

Query: 132 VQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFM---- 187
              A+ +L +M +   +P+S T   ++  C++   +    +   +   QI K  FM    
Sbjct: 334 CSEAMNLLSQMRKEGSEPNSVTLLAVVSACTHSASL----KIASTVHSQILKCGFMSHIL 389

Query: 188 ---ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEI 243
              ALI+ Y  CG    AR+V  +    +  +  V  S++++A   HG  S+A+ +++ +
Sbjct: 390 LSNALIDMYAKCGSLPAAREVFYE----LNEKDLVSWSSMINAYGLHGHGSEALEIFKGM 445

Query: 244 KEAGCNLEPRAVIALIEHLNSEG 266
            +AG  ++  A +A++   N  G
Sbjct: 446 IKAGHEVDGMAFLAVLSACNHAG 468



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 101/221 (45%), Gaps = 13/221 (5%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A++++ QM +    P++ T+ +++ AC  S    +   ++  I       +     ++I 
Sbjct: 337 AMNLLSQMRKEGSEPNSVTLLAVVSACTHSASLKIASTVHSQILKCGFMSHILLSNALID 396

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K     +A  +  +L E +L+  +SM NA    Y        AL + K M +A  + 
Sbjct: 397 MYAKCGSLPAAREVFYELNEKDLVSWSSMINA----YGLHGHGSEALEIFKGMIKAGHEV 452

Query: 150 DSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQ----ITKYVFMALINAYTTCGEFEKARQV 205
           D   F  ++  C N   +++  + + +  G+    +T   +   IN     G+ + A +V
Sbjct: 453 DGMAFLAVLSAC-NHAGLVEEAQTIFTQAGKYHMPVTLEHYSCYINLLGRFGKIDDAFEV 511

Query: 206 VLDAEIPVKSRSEVKSALVSALASHGRTSDA--IIVYEEIK 244
            ++  +P+K  + + S+L+SA  +HGR   A  II  E +K
Sbjct: 512 TIN--MPMKPSARIWSSLLSACETHGRLDVACKIIANELMK 550



 Score = 39.3 bits (90), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 45/255 (17%), Positives = 113/255 (44%), Gaps = 17/255 (6%)

Query: 11  SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYP 70
           + SY  ++   C    +  A+ ++++M     VP +E + S+L  C      + V R+  
Sbjct: 113 TVSYCSIVNCYCQDGLLSEAMKLLKEMYFYGFVPKSELVASLLALCTRMGSSSKVARMLH 172

Query: 71  --MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
             ++    ++ +     +++ + +K  D  +A+ + D ++  N +   +M +  +A Y  
Sbjct: 173 ALVLVDERIQESVLLSTALLDMYLKFDDPAAAFHVFDQMELKNEVSWTAMISGCVANY-- 230

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKS----AGGQITKY 184
             + +  +   + M++ N++P+  T   ++  C      ++  +++       G      
Sbjct: 231 --NYEVGIDFFRAMQRENLRPNRVTLLSVLPACVELGYGLRLVKEIHGFSFRHGFHSDDR 288

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEI 243
           +  A +  Y  CG    +R +   +++    R  V  S+++S  A +G  S+A+ +  ++
Sbjct: 289 LIAAFMTMYCRCGSVSLSRLLFETSKV----RDVVMWSSMISGYAENGDCSEAMNLLSQM 344

Query: 244 KEAGCNLEPRAVIAL 258
           ++ G   EP +V  L
Sbjct: 345 RKEGS--EPNSVTLL 357


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/294 (20%), Positives = 129/294 (43%), Gaps = 25/294 (8%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  LI   C    ++ A++  +QM    L P+  T  S+++   +    +   
Sbjct: 339 LPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAY 398

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           RI+  +      P   T+ ++++ +      + A  LL  ++   L P    Y+ I+AG+
Sbjct: 399 RIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGF 458

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITK 183
            R +++  A  +  EM +  V PD+ T+S LI     +    +    ++++ +      +
Sbjct: 459 CRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDE 518

Query: 184 YVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDA--- 236
           + + +LIN Y   G+  +A     +++    +P    +   + L++ L    RT +A   
Sbjct: 519 FTYTSLINGYCKEGDLNEALNLHDEMIKKGFLP---DTVTYNVLINGLNKQARTREAKRL 575

Query: 237 ------------IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
                        I Y+ + E+  ++E ++V+ALI+    +G +N   Q+ E +
Sbjct: 576 LLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESM 629



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/310 (20%), Positives = 138/310 (44%), Gaps = 10/310 (3%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           SY  LI   C    + + L   E+M +   +P+  T N+++ A  +    +   ++   +
Sbjct: 205 SYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSM 264

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               L+PN  T+  +I+   ++   +    +L ++      P    YN ++ GY +  + 
Sbjct: 265 GLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNF 324

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMAL 189
             AL++  EM +  + PD  T++ LI+      N    +++++Q+   G +     + +L
Sbjct: 325 HQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSL 384

Query: 190 INAYTTCGEFEKARQV---VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA 246
           IN ++  G  ++A ++   ++ +  P    +   +AL++     GR  +AI +   ++  
Sbjct: 385 INGFSQKGFMDEAYRIWDEMIRSGFPPTIVT--YNALLNGHCVSGRMEEAIGLLRGMEGK 442

Query: 247 GCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQLSSA 304
           G + +  +   +I       EL+R  Q+  E+ +     D      LI      ++L+ A
Sbjct: 443 GLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEA 502

Query: 305 TDLLKQLKDK 314
            DL +++ +K
Sbjct: 503 CDLFQEMLNK 512



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 122/275 (44%), Gaps = 29/275 (10%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           ++P   SY  +I   C   ++  A  +  +MV+  + P   T +S++    E    N   
Sbjct: 444 LSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEAC 503

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  + + +L P+  T+ S+I+   K  D + A +L D++ +   +P    YN ++ G 
Sbjct: 504 DLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGL 563

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVF 186
            ++   + A  +L ++      P+  T+  LI +CS+ E         KS          
Sbjct: 564 NKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIE--------FKSV--------- 606

Query: 187 MALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAII-----VYE 241
           +ALI  +   G   +A QV    E  +K   +   A+ + +  HG   D  +     +Y+
Sbjct: 607 VALIKGFCMKGLMNEADQVF---ESMIKRNQKPNEAVYNVII-HGHCRDGNVHKAHKLYK 662

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEG---ELNRLIQ 273
           E+ + G       +IAL++ L SEG   +LN +I+
Sbjct: 663 EMVDFGFIPHTVTIIALVKALYSEGMDEQLNLVIR 697



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 68/357 (19%), Positives = 135/357 (37%), Gaps = 18/357 (5%)

Query: 79  PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMV 138
           PN  T+ ++I    K+K  D A+ LL  +    L P    YN ++ G  R   ++    V
Sbjct: 236 PNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGV 295

Query: 139 LKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTT 195
           L EM++    PD  T++ L++      N    +  + ++   G       + +LIN    
Sbjct: 296 LAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCK 355

Query: 196 CGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRA 254
            G   +A +      +  ++      ++L++  +  G   +A  +++E+  +G    P  
Sbjct: 356 AGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGF---PPT 412

Query: 255 VIALIEHLNS---EGELNRLIQLLEEVHDPDYWMD--GCCRLILHCVRFKQLSSATDLLK 309
           ++     LN     G +   I LL  +       D      +I    R+++L  A  +  
Sbjct: 413 IVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNA 472

Query: 310 QLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLG 369
           ++ +K    +        +  C+    +        DL Q + ++  LP        + G
Sbjct: 473 EMVEKGVSPDAITYSSLIQGLCEQRRLNE-----ACDLFQEMLNKSLLPDEFTYTSLING 527

Query: 370 ACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDD 426
            C    DL  A  +  E    G   + ++Y  +          + A +LL K+  D+
Sbjct: 528 YCKEG-DLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDE 583



 Score = 44.7 bits (104), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 108/261 (41%), Gaps = 21/261 (8%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           ++P + +Y  LI   C+  +++ A D+ ++M+   L+P   T  S+++  C+E  + N  
Sbjct: 479 VSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEG-DLNEA 537

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN----- 120
             ++  +      P++ T+  +I+   K      A  LL  L     +P    Y+     
Sbjct: 538 LNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIES 597

Query: 121 ----------AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-C--SNEEDI 167
                     A++ G+  K  +  A  V + M + N KP+   ++ +IH  C   N    
Sbjct: 598 CSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKA 657

Query: 168 IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVK-SRSEVKSALVSA 226
            K Y+++   G        +AL+ A  + G  E+   V+ D     K S +E+  ALV  
Sbjct: 658 HKLYKEMVDFGFIPHTVTIIALVKALYSEGMDEQLNLVIRDILRSCKLSDAELSKALVQI 717

Query: 227 LASHGRTSDAIIVYEEIKEAG 247
               G       +  E+ + G
Sbjct: 718 NHKEGNIDAVFNLLTEMAKDG 738


>gi|356507694|ref|XP_003522599.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Glycine max]
          Length = 535

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 89/184 (48%), Gaps = 14/184 (7%)

Query: 80  NSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPT--ASMYNAIMAGYFRKKDVQGALM 137
           N  ++ ++I   +++ D + A  +        +MP   A  +N+++AG    KD +GA+ 
Sbjct: 214 NVVSWNTVIGRYIRLGDIEGARRVFQ------IMPQRDAVSWNSLIAGCVSVKDYEGAMG 267

Query: 138 VLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYT 194
           +  EM+ A V+P   T   ++  C+    +    K +E LK+ G +I  Y+  AL+N Y+
Sbjct: 268 LFSEMQNAEVRPTEVTLISVLGACAETGALEMGSKIHESLKACGHKIEGYLGNALLNMYS 327

Query: 195 TCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRA 254
            CG+   A +V     I   S     +A++  LA HG   +A+ ++ E++     + P  
Sbjct: 328 KCGKLNSAWEVFNGMRIKTLS---CWNAMIVGLAVHGYCEEALQLFSEMESGLDTVRPNR 384

Query: 255 VIAL 258
           V  L
Sbjct: 385 VTFL 388



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/255 (20%), Positives = 113/255 (44%), Gaps = 22/255 (8%)

Query: 5   LEITPS--SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
            +I P   + S+  LI     +     A+ +  +M   E+ P+  T+ S+L AC E+   
Sbjct: 238 FQIMPQRDAVSWNSLIAGCVSVKDYEGAMGLFSEMQNAEVRPTEVTLISVLGACAETGAL 297

Query: 63  NLVRRIYPMI--CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
            +  +I+  +  C H  K       +++++  K    +SA+ + + ++    + T S +N
Sbjct: 298 EMGSKIHESLKACGH--KIEGYLGNALLNMYSKCGKLNSAWEVFNGMR----IKTLSCWN 351

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQA--NVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAG 178
           A++ G       + AL +  EME     V+P+  TF  ++  CS++  + K         
Sbjct: 352 AMIVGLAVHGYCEEALQLFSEMESGLDTVRPNRVTFLGVLIACSHKGLVDKARWNFDHMA 411

Query: 179 GQ------ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGR 232
            Q      I  Y    +++  +  G  E+A Q++  A  P+++ + +   L+ A  + G 
Sbjct: 412 KQYKILPDIKHY--GCIVDLLSRFGLLEEAHQMIKTA--PLQNSAILWRTLLGACRTQGN 467

Query: 233 TSDAIIVYEEIKEAG 247
              A + ++++ + G
Sbjct: 468 VELAKVSFQQLAKLG 482


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 111/244 (45%), Gaps = 12/244 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           ALD+   M+   ++P+  T +S L AC       +  +++           +    S+IS
Sbjct: 360 ALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLIS 419

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  +    D A    D L E NL+     YN ++  Y +  + + AL +  E+E   +  
Sbjct: 420 MYARSGRIDDARKAFDILFEKNLIS----YNTVIDAYAKNLNSEEALELFNEIEDQGMGA 475

Query: 150 DSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
            + TF+ L+   ++   I K    + ++  +G ++ + V  ALI+ Y+ CG  E A QV 
Sbjct: 476 SAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVF 535

Query: 207 LDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
            D E     R+ +  +++++  A HG  + A+ ++ ++ E G        IA++   +  
Sbjct: 536 EDME----DRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHV 591

Query: 266 GELN 269
           G +N
Sbjct: 592 GLVN 595



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 42/223 (18%), Positives = 97/223 (43%), Gaps = 10/223 (4%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           SY  +I      L    AL++  ++    +  S  T  S+L             +I+  +
Sbjct: 444 SYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARV 503

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               LK N     ++IS+  +  + +SA+ + +D+++ N++     + +I+ G+ +    
Sbjct: 504 IKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVIS----WTSIITGFAKHGFA 559

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLKSAGGQITKYV-FMA 188
             AL +  +M +  V+P+  T+  ++  CS+     +  K+++ + +  G I +   +  
Sbjct: 560 TQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYAC 619

Query: 189 LINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHG 231
           +++     G   +A Q +    +P K+ + V    + A   HG
Sbjct: 620 IVDILGRSGSLSEAIQFI--NSMPYKADALVWRTFLGACRVHG 660



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 84/426 (19%), Positives = 173/426 (40%), Gaps = 41/426 (9%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+D+   M+     P   T++ ++ AC       L ++++     H L  +      +I+
Sbjct: 255 AIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLIN 314

Query: 90  LNVKIK---DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV-QGALMVLKEMEQA 145
           +  K        +A  + D + + N+      + A++ GY +K    + AL + + M   
Sbjct: 315 MYAKCSVDGSMCAARKIFDQILDHNVFS----WTAMITGYVQKGGYDEEALDLFRGMILT 370

Query: 146 NVKPDSQTFSYLIHNCSN------EEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEF 199
           +V P+  TFS  +  C+N       E +  +  +L   G      V  +LI+ Y   G  
Sbjct: 371 HVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKL---GFSSVNCVANSLISMYARSGRI 427

Query: 200 EKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALI 259
           + AR+     +I  +      + ++ A A +  + +A+ ++ EI++ G         +L+
Sbjct: 428 DDARKAF---DILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLL 484

Query: 260 EHLNSEGELNRLIQLLEEVHDPDYWMDG--CCRLILHCVRFKQLSSATDLLKQLKDKFKD 317
               S G + +  Q+   V      ++   C  LI    R   + SA  + + ++D+   
Sbjct: 485 SGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVI 544

Query: 318 DEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDL 377
              ++   F++     AT         L+L   + +E G+ P+      +L AC +   +
Sbjct: 545 SWTSIITGFAK--HGFATQ-------ALELFHKMLEE-GVRPNEVTYIAVLSACSHVGLV 594

Query: 378 KRAHLIWKEYENAGLPYNVLSYLWMYKAFL----ASGNRKSASKLLSKMP-KDDPHV-RF 431
                 WK +++    + V+  +  Y   +     SG+   A + ++ MP K D  V R 
Sbjct: 595 NEG---WKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRT 651

Query: 432 VIQACK 437
            + AC+
Sbjct: 652 FLGACR 657



 Score = 41.6 bits (96), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 7/117 (5%)

Query: 135 ALMVLKEMEQANVKPDSQTFSYLIHNC--SNEEDI-IKYYEQLKSAGGQITKYVFMALIN 191
           A+  L+ M      PD QT+S  +  C  +   DI    +E+L  +  Q+      +LI+
Sbjct: 50  AISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLIS 109

Query: 192 AYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAG 247
            Y+ CG++EKA  +     +   SR  +  SA+VS  A++     A++ + ++ E G
Sbjct: 110 LYSKCGQWEKATSIF---RLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENG 163


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 117/254 (46%), Gaps = 6/254 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P   +Y  LI   C +  +  A D+V +M +  + PS ET N+++ A   + +     
Sbjct: 401 IRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCF 460

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +    +K N  +F S++    K      A ++LDD+   +++P A +YN+I+  Y
Sbjct: 461 TVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAY 520

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITK 183
                 + A +++++M+ + V     T++ L+        I +  E    L + G +   
Sbjct: 521 IESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDV 580

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             +  +I+A    G+ ++A +++ +  +  ++        L+SAL S GR  D   +Y+ 
Sbjct: 581 VSYNTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHPLLSALGSAGRVHDMECLYQH 640

Query: 243 IKEAGCNLEPRAVI 256
           +     N+EP + I
Sbjct: 641 MVHK--NVEPSSSI 652



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/276 (21%), Positives = 124/276 (44%), Gaps = 39/276 (14%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  +I        +     + +QM+Q    P+  T N +L     +   +  R
Sbjct: 226 VAPNQITYNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETR 285

Query: 67  RIYPMICHHNLKPNSETF-------------RSMISL---NVKIKDFDSAYS-------- 102
            +   +  +++ P+  T+             R+M+SL   ++K      AY+        
Sbjct: 286 ALMDEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGL 345

Query: 103 -----------LLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151
                      +L+ L    L+PT ++YN ++ GY + +D+QGA  + ++M+  +++PD 
Sbjct: 346 CKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDH 405

Query: 152 QTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
            T++ LI+     E I +  +   +++ +G   +   F  LI+AY   G+ EK   V+ D
Sbjct: 406 ITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSD 465

Query: 209 AE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
            +   +KS      ++V A   +G+  +A+ + +++
Sbjct: 466 MQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDM 501



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 93/186 (50%), Gaps = 6/186 (3%)

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           ++  M+ H  L P +  + ++I+   +++D   A+S+ + +K  ++ P    YNA++ G 
Sbjct: 356 QVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGL 415

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY---EQLKSAGGQITK 183
            + + +  A  ++ EME++ V P  +TF+ LI        + K +     ++  G +   
Sbjct: 416 CKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNV 475

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEI--PVKSRSEVKSALVSALASHGRTSDAIIVYE 241
             F +++ A+   G+  +A   +LD  I   V   ++V ++++ A    G T  A ++ E
Sbjct: 476 ISFGSVVKAFCKNGKIPEA-VAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVE 534

Query: 242 EIKEAG 247
           ++K +G
Sbjct: 535 KMKSSG 540



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 77/400 (19%), Positives = 161/400 (40%), Gaps = 30/400 (7%)

Query: 43  VPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYS 102
           +PS  + N +L +         VR  + ++     +P++  +   +   V   D D A +
Sbjct: 120 LPSLSSCNLLLESLLSVGRHADVRAAFGLLVAAGARPDTFAWNKAVQACVAAGDLDEALA 179

Query: 103 LLDDL--KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160
           +L  +   E    P A  YN ++AG +R      AL V  EM    V P+  T++ +I  
Sbjct: 180 MLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDG 239

Query: 161 CSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSR 216
                D+    +  +Q+   G +     +  L++     G  ++ R ++ +     +   
Sbjct: 240 HVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPD 299

Query: 217 SEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276
               S L   L   G +   + ++ E  + G  +       L+  L  +G++ +  Q+LE
Sbjct: 300 GFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLE 359

Query: 277 E-VHDP--------DYWMDGCCRLILHCVRFKQLSSATDLLKQLKDK-FKDDEMAMEYHF 326
             VH          +  ++G C++       + L  A  + +Q+K +  + D +      
Sbjct: 360 MLVHTGLVPTTAIYNTLINGYCQV-------RDLQGAFSIFEQMKSRHIRPDHITYNALI 412

Query: 327 SEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKE 386
           + +      T+  D+ + ++       + G+ PS +  + L+ A   A  L++   +  +
Sbjct: 413 NGLCKMEMITEAEDLVMEME-------KSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSD 465

Query: 387 YENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDD 426
            ++ G+  NV+S+  + KAF  +G    A  +L  M   D
Sbjct: 466 MQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKD 505



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 78/428 (18%), Positives = 176/428 (41%), Gaps = 32/428 (7%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETI--NSILHACEESYEFNLVR 66
           P + ++ K +        +  AL ++ +M + E  P  +    N ++     S + +   
Sbjct: 156 PDTFAWNKAVQACVAAGDLDEALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDAL 215

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++  +    + PN  T+ +MI  +VK  D ++ + L D + +    P    YN +++G 
Sbjct: 216 KVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGL 275

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKYYEQLKSAGGQITK 183
            R   +     ++ EM   ++ PD  T+S L    +   D   ++  + +    G  I  
Sbjct: 276 CRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGA 335

Query: 184 YVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           Y    L+N     G+  KA QV+ +     +   + + + L++          A  ++E+
Sbjct: 336 YTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQ 395

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRL--IQLLEEVHD---------PDYWMDGCCRL 291
           +K    ++ P       +H+     +N L  ++++ E  D          D  ++    L
Sbjct: 396 MKSR--HIRP-------DHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTL 446

Query: 292 ILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFI 351
           I    R  QL     +L  ++DK     +       + FC+     P  V I  D++   
Sbjct: 447 IDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKI-PEAVAILDDMIH-- 503

Query: 352 KDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGN 411
           KD +   P+ +  + ++ A + +   ++A L+ ++ +++G+  ++ +Y  + K    +  
Sbjct: 504 KDVV---PNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQ 560

Query: 412 RKSASKLL 419
              A +L+
Sbjct: 561 IDEAEELI 568



 Score = 46.2 bits (108), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 33/173 (19%), Positives = 73/173 (42%), Gaps = 3/173 (1%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++ P++  Y  +I    +      A  +VE+M    +  S  T N +L    ++ + +  
Sbjct: 505 DVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEA 564

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +   + +  L+P+  ++ ++IS      D D A  LL ++ + ++ PT   Y+ +++ 
Sbjct: 565 EELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHPLLSA 624

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAG 178
                 V     + + M   NV+P S  +      C NE  +    +++   G
Sbjct: 625 LGSAGRVHDMECLYQHMVHKNVEPSSSIYGT---RCENESKVASLKKEMSEKG 674


>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
          Length = 991

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/275 (19%), Positives = 118/275 (42%), Gaps = 5/275 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
            TP+  ++  LI   C   K   AL +  +M+  +     +    ++++  +       +
Sbjct: 388 FTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAK 447

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   I  + L PN  T+ S+I    K    D A  +L  ++     P A  YN++M G 
Sbjct: 448 ELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGL 507

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITK 183
            + K +  A+ +L +M++  + P+  T++ L+    +E D     + +E ++  G +  +
Sbjct: 508 VKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDE 567

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
           + +  L +A    G  E+A   ++   + +       + L+   +  G T  A  + E +
Sbjct: 568 HAYAVLTDALCKAGRAEEAYSFIVRKGVALT--KVYYTTLIDGFSKAGNTDFAATLIERM 625

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            + GC  +      L+  L  +  LN  + +L+++
Sbjct: 626 IDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQM 660



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 108/241 (44%), Gaps = 5/241 (2%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A +++ ++    LVP+  T  SI+    +S + ++   +  M+     +PN+ T+ S++ 
Sbjct: 446 AKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMY 505

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
             VK K    A +LL  +++  ++P    Y  ++ G   + D   A  + + MEQ  +KP
Sbjct: 506 GLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKP 565

Query: 150 DSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV--- 206
           D   ++ L           + Y  +   G  +TK  +  LI+ ++  G  + A  ++   
Sbjct: 566 DEHAYAVLTDALCKAGRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERM 625

Query: 207 LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
           +D      S +   S L+ AL    R ++A+ + +++   G      A   LI+ +  EG
Sbjct: 626 IDEGCTPDSYT--YSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREG 683

Query: 267 E 267
           +
Sbjct: 684 K 684



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 99/460 (21%), Positives = 175/460 (38%), Gaps = 57/460 (12%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSIL----------HAC 56
           + P + +Y  +I   C    +  A      +++G L P T T N+++           AC
Sbjct: 179 LLPDTVTYNTMIKSYCKEGDLTTAHRCFRLLLEGGLEPETFTCNALVLGYCRTGELRKAC 238

Query: 57  --------------EESY--------EFNLVRR---IYPMICHHNLKPNSETFRSMISLN 91
                         E SY        E   VR    ++ M+      PN   F  +IS  
Sbjct: 239 WLFLMMPLMGCQRNEYSYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGL 298

Query: 92  VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151
            K      A  L D + +  ++P+   YNA++ GY +   +  AL + + ME+    PD 
Sbjct: 299 CKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDD 358

Query: 152 QTFSYLIHNCSNE--EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA-RQVVLD 208
            T++ LI+   ++  E+  +        G   T   F  LIN Y    +F+ A R     
Sbjct: 359 WTYNTLIYGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKM 418

Query: 209 AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV--IALIEHLNSEG 266
                K   +V   L+++L    R  +A  +  EI   G  L P  +   ++I+     G
Sbjct: 419 MSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANG--LVPNVITYTSIIDGYCKSG 476

Query: 267 ELNRLIQLLEEVH----DPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAM 322
           +++  +++L+ +      P+ W      L+   V+ K+L  A  LL +++   KD  +  
Sbjct: 477 KVDIALEVLKMMERDGCQPNAWTYN--SLMYGLVKDKKLHKAMALLTKMQ---KDGIIPN 531

Query: 323 EYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHL 382
              ++ +       D  D      L + ++   GL P       L  A   A    RA  
Sbjct: 532 VITYTTLL--QGQCDEHDFDNAFRLFEMMEQN-GLKPDEHAYAVLTDALCKA---GRAEE 585

Query: 383 IWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
            +      G+    + Y  +   F  +GN   A+ L+ +M
Sbjct: 586 AYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERM 625



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 136/318 (42%), Gaps = 28/318 (8%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  LI   CD  K   A +++   V+    P+  T  ++++    + +F+   R+
Sbjct: 356 PDDWTYNTLIYGLCDQ-KTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRM 414

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +     K + + F  +I+  +K      A  LL+++    L+P    Y +I+ GY +
Sbjct: 415 KNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCK 474

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMA 188
              V  AL VLK ME+   +P++ T++ L++    ++ + K    L     ++ K   + 
Sbjct: 475 SGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLT----KMQKDGIIP 530

Query: 189 LINAYTT-----CGE--FEKA-RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
            +  YTT     C E  F+ A R   +  +  +K      + L  AL   GR  +A   Y
Sbjct: 531 NVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEA---Y 587

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC------RLILH 294
             I   G  L       LI+  +  G  +    L+E + D     +GC        ++LH
Sbjct: 588 SFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMID-----EGCTPDSYTYSVLLH 642

Query: 295 CV-RFKQLSSATDLLKQL 311
            + + K+L+ A  +L Q+
Sbjct: 643 ALCKQKRLNEALPILDQM 660



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/331 (18%), Positives = 135/331 (40%), Gaps = 42/331 (12%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  +I   C   KV +AL+V++ M +    P+  T NS+++   +  + +   
Sbjct: 458 LVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAM 517

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMP------------ 114
            +   +    + PN  T+ +++       DFD+A+ L + +++  L P            
Sbjct: 518 ALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDAL 577

Query: 115 --------------------TASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTF 154
                               T   Y  ++ G+ +  +   A  +++ M      PDS T+
Sbjct: 578 CKAGRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTY 637

Query: 155 SYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AE 210
           S L+H    ++ +   +   +Q+   G + T + +  LI+     G+ + A+++  +   
Sbjct: 638 SVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTS 697

Query: 211 IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNR 270
              K  +   +  +++    GR  DA  +  +++  G   +      LI+     G ++R
Sbjct: 698 SGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDR 757

Query: 271 LIQLLEEV----HDPDYWMDGCCRLILHCVR 297
               L+ +     +P+YW    C L+ H ++
Sbjct: 758 AFSTLKRMVGASCEPNYWTY--CLLLKHLLK 786



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 82/190 (43%), Gaps = 10/190 (5%)

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R+Y  +    L P++ T+ +MI    K  D  +A+     L E  L P     NA++ GY
Sbjct: 169 RVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRCFRLLLEGGLEPETFTCNALVLGY 228

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-----CSNEEDIIKYYEQLKSAGGQI 181
            R  +++ A  +   M     + +  +++ LI       C  E  ++  +  +K  G   
Sbjct: 229 CRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCEAKCVREALVL--FLMMKRDGCSP 286

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDA--EIPVKSRSEVKSALVSALASHGRTSDAIIV 239
               F  LI+     G    AR ++ DA  +  V       +A++   +  GR +DA+ +
Sbjct: 287 NVRAFTFLISGLCKSGRVGDAR-LLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKI 345

Query: 240 YEEIKEAGCN 249
            E +++ GC+
Sbjct: 346 KELMEKNGCH 355



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 74/186 (39%), Gaps = 20/186 (10%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSIL-----------HA 55
           + P   +Y  LI     +  +  A   +++MV     P+  T   +L            +
Sbjct: 735 VAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRS 794

Query: 56  CEESYEFNLVR-----RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEM 110
            + S  +NL+      ++   +  H L P   T+ S+I+   K    + A  LLD +   
Sbjct: 795 VDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGK 854

Query: 111 NLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY 170
            L P   +Y  ++      K  + AL  +  M +   +P  +++  L+    NE D    
Sbjct: 855 GLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGD---- 910

Query: 171 YEQLKS 176
           +E++KS
Sbjct: 911 FEKVKS 916


>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 550

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 76/156 (48%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           A+  ITP   SY  LI   C   ++  AL +  +M   +L P+  T +S++    +S   
Sbjct: 350 AECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRI 409

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           +    ++  I      PN  T+  M+    KI+  D A  L + + E  L P  S YN +
Sbjct: 410 SYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNIL 469

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
           + GY + K +  A+ + +EM + N+ PDS T++ LI
Sbjct: 470 INGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLI 505



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 115/282 (40%), Gaps = 12/282 (4%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P   +Y  LI   C L +      ++  MV   +  +  T N ++ A  +        
Sbjct: 249 IDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAH 308

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +  ++     +P+  TF +++S      D   A  L D   E  + P    YN ++ GY
Sbjct: 309 DMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGY 368

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEEDIIKYYEQLKSA---GGQIT 182
            +   +  AL +  +M    + P+  T+S LI   C +    I Y  +L SA   GG   
Sbjct: 369 CKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGR--ISYAWELFSAIHDGGPSP 426

Query: 183 KYV-FMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
             + +  +++A       +KA ++  L  E  +       + L++      R  +A+ ++
Sbjct: 427 NVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLF 486

Query: 241 EEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHD 280
           EE+     NL P +V    LI+ L   G ++   +L   +HD
Sbjct: 487 EEMHRR--NLVPDSVTYNCLIDGLCKSGRISHAWELFNVMHD 526



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/163 (20%), Positives = 70/163 (42%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++ P+  +Y  LI   C   ++  A ++   +  G   P+  T N +L A  +    +  
Sbjct: 388 KLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKA 447

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             ++ ++    L PN  ++  +I+   K K  D A +L +++   NL+P +  YN ++ G
Sbjct: 448 IELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDG 507

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII 168
             +   +  A  +   M       D  T++ L    S  + +I
Sbjct: 508 LCKSGRISHAWELFNVMHDGGPPVDVITYNILFDAFSKIQHVI 550



 Score = 43.1 bits (100), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 81/437 (18%), Positives = 163/437 (37%), Gaps = 28/437 (6%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           ITPS  +   LI   C L  +  A  V+  +++     +  T+ +I+     + E     
Sbjct: 109 ITPSIVTLSILINCYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVRKAL 168

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
             +  +       +  T+ ++I+   KI     A+ LL  ++   + P   +YN I+ G 
Sbjct: 169 EFHDSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGL 228

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITK 183
            +   V  A  +  ++    + PD  T++ LIH         ++ +    +      +  
Sbjct: 229 CKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNV 288

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYE 241
           Y +  LI+A    G   KA   + +  I    R ++ +   L+S    +    +A  +++
Sbjct: 289 YTYNILIDALCKKGMLGKAHD-MRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFD 347

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDY-----WMDGCCRLI 292
              E G   +  +   LI        ++  + L  +++     P+       +DG C+  
Sbjct: 348 TFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKS- 406

Query: 293 LHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIK 352
                  ++S A +L   + D      +       +  C+I   D     I L  L F  
Sbjct: 407 ------GRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDK---AIELFNLMF-- 455

Query: 353 DELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNR 412
            E GL P+    + L+     ++ +  A  +++E     L  + ++Y  +      SG  
Sbjct: 456 -ERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRI 514

Query: 413 KSASKLLSKMPKDDPHV 429
             A +L + M    P V
Sbjct: 515 SHAWELFNVMHDGGPPV 531


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 119/277 (42%), Gaps = 14/277 (5%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           PS+ +Y ++I   C +  +  A+ + ++M++    P+  T N++++   +    N   R+
Sbjct: 410 PSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRL 469

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
             ++  + LKP++ T+  +IS   +    + A SL   + E  + P    Y AI+ GYF 
Sbjct: 470 LEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFN 529

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMA 188
              V  AL +  +M ++   P SQT++ +I   S    I     + ++  G++ K   + 
Sbjct: 530 LAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSI----SEAENFCGKMVKQGLLP 585

Query: 189 LINAYTT-----CGEFEKARQVVLDAEIPVKS---RSEVKSALVSALASHGRTSDAII-- 238
            +  YT+     C          +  E+  ++        S+L+  L   GR  DA +  
Sbjct: 586 NVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYN 645

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLL 275
           +   +   GC         L++ L  EG      QL+
Sbjct: 646 LLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLV 682



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/298 (20%), Positives = 135/298 (45%), Gaps = 15/298 (5%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P+  +Y   +   CD      A++++ +M +   VP+ +T  +++       +F +  
Sbjct: 303 IEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAI 362

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +Y  +    L P + T+ ++I+       F++A+++   +     +P+   YN I+  +
Sbjct: 363 GLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCF 422

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-C--SNEEDIIKYYEQLKSAGGQITK 183
               D+Q A+++  +M +A   P+  T++ LI+  C   N  + ++  E +K  G +   
Sbjct: 423 CLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDA 482

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           + +  LI+ ++  G+ E A  +     E  +       +A++    +  +  DA+ ++ +
Sbjct: 483 WTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWK 542

Query: 243 IKEAGCNLEP----RAVIALIEHLNS----EGELNRLIQ--LLEEVHDPDYWMDGCCR 290
           + E+G NL        +I+     NS    E    ++++  LL  V     ++DG CR
Sbjct: 543 MVESG-NLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCR 599



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/285 (19%), Positives = 122/285 (42%), Gaps = 14/285 (4%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  ++  LI+      K  +A+ +  +M+   LVP+T T N++++       F     I
Sbjct: 340 PNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTI 399

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +  H   P+++T+  +I     + D   A  + D + +    P    YN ++ GY +
Sbjct: 400 FKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCK 459

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYV 185
           + ++  A+ +L+ M+   +KPD+ T++ LI   S     E     +  +   G       
Sbjct: 460 QGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVT 519

Query: 186 FMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
           + A+I+ Y    + + A     ++V    +P    S+  + ++S  +     S+A     
Sbjct: 520 YTAIIDGYFNLAKVDDALALFWKMVESGNLP---SSQTYNVMISGFSKTNSISEAENFCG 576

Query: 242 EIKEAGCNLEPRAV--IALIEHLNSEGELNRLIQLLEEVHDPDYW 284
           ++ + G  L P  +   + I+ L   G      ++  E+   +Y+
Sbjct: 577 KMVKQG--LLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYF 619



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 93/472 (19%), Positives = 185/472 (39%), Gaps = 57/472 (12%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           +++K +   +  S+  L+        V +A D+  +M+   + PS  T N++++   +  
Sbjct: 157 INSKYDFGYTLCSFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKG 216

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
                + I   I  ++  PN+ T+ S+I  + +  + D A+++ D + +    P +  Y+
Sbjct: 217 RVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYS 276

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI-----HNCSNEEDIIKYYEQLK 175
            ++ G   +  ++ A+ +L+EM Q  ++P   T++  +       CS+E   ++   ++K
Sbjct: 277 TLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEA--VELLGKMK 334

Query: 176 SAGGQITKYVFMALINAYTTCGEFEKA----RQVVLDAEIP-------------VKSRSE 218
             G       F ALI+  +  G+FE A     +++ D  +P             V+ R E
Sbjct: 335 KRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFE 394

Query: 219 VKSALVSALASHGR-------------------TSDAIIVYEEIKEAGCNLEPRAVIALI 259
               +   + SHG                       A+++++++ +AG +        LI
Sbjct: 395 TAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLI 454

Query: 260 EHLNSEGELNRLIQLLEEVHD----PDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKF 315
                +G LN  ++LLE +      PD W      LI    R  +L  AT L   + +  
Sbjct: 455 YGYCKQGNLNNAMRLLEIMKGNGLKPDAWTY--TELISGFSRGGKLEHATSLFYGMMEHG 512

Query: 316 KDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIK-DELGLPPSRKCLDFLLGACVNA 374
                       + +  +A  D         L  F K  E G  PS +  + ++      
Sbjct: 513 ISPNHVTYTAIIDGYFNLAKVDDA-------LALFWKMVESGNLPSSQTYNVMISGFSKT 565

Query: 375 RDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDD 426
             +  A     +    GL  NV++Y         +G    A K+  +M K +
Sbjct: 566 NSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRN 617



 Score = 40.0 bits (92), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 30/147 (20%), Positives = 66/147 (44%), Gaps = 10/147 (6%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYE 61
            K  + P+  +Y   I   C   +  +A  +  +M +    P+  T +S+++  C+E   
Sbjct: 579 VKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRA 638

Query: 62  -----FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTA 116
                +NL+ R+     H+  +PN +T+ +++           A  L+  +++  L P+ 
Sbjct: 639 EDAEMYNLLARL----THYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSE 694

Query: 117 SMYNAIMAGYFRKKDVQGALMVLKEME 143
            +Y A++ G  +   V+ AL +   M+
Sbjct: 695 EIYRALLIGECKNLKVESALNIFYSMD 721


>gi|357143056|ref|XP_003572787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Brachypodium distachyon]
          Length = 594

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 104/205 (50%), Gaps = 10/205 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A++++++M+     P + T+ SIL A  ES +      I+  +       ++E    +I+
Sbjct: 326 AIELLKRMIAESARPDSATMASILPAYAESADVRQATNIHCYLLTLGFLRSTEITTGLIN 385

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K  D D ++SL D L E +++     +  ++AGY      Q ++++   M Q  VKP
Sbjct: 386 VYAKAGDLDVSWSLFDGLPEKDVVA----WTTVIAGYGMHGQAQTSILLYNRMVQLGVKP 441

Query: 150 DSQTFSYLIHNCSN---EEDIIKYYEQLKSAGGQITKY-VFMALINAYTTCGEFEKARQV 205
           ++ TF+ L++ CS+    ++ ++ +E ++   G +     + +L++     G  E+A ++
Sbjct: 442 NTVTFASLLYACSHVGMVDEGLQLFEDMRGIHGVMPNADHYSSLVDMVGRAGRIEEAYRL 501

Query: 206 VLDAEIPVKSRSEVKSALVSALASH 230
           + D  +P++  + V  AL+ A   H
Sbjct: 502 IED--MPLEPSTSVWGALLGACVLH 524



 Score = 40.0 bits (92), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 33/163 (20%), Positives = 74/163 (45%), Gaps = 6/163 (3%)

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLK 175
           +NA ++GY   +  + A+ +LK M   + +PDS T + ++   +   D+      +  L 
Sbjct: 310 WNATISGYTHNEQEKKAIELLKRMIAESARPDSATMASILPAYAESADVRQATNIHCYLL 369

Query: 176 SAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSD 235
           + G   +  +   LIN Y   G+ + +   + D  +P K      + +++    HG+   
Sbjct: 370 TLGFLRSTEITTGLINVYAKAGDLDVSWS-LFDG-LPEKD-VVAWTTVIAGYGMHGQAQT 426

Query: 236 AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           +I++Y  + + G         +L+   +  G ++  +QL E++
Sbjct: 427 SILLYNRMVQLGVKPNTVTFASLLYACSHVGMVDEGLQLFEDM 469


>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 132/276 (47%), Gaps = 17/276 (6%)

Query: 17  LITY-----SCDLLKVHV--ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           LITY     +C    V +  ALD+ E+M +  + P   T NS++  C     +   +R++
Sbjct: 269 LITYNTIIDACGKGGVDLKKALDIFEEMQKEGVEPDRITFNSLIAVCSRGSLWEDSQRVF 328

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
             +    ++ +  T+ ++I    K    + A S++  ++  N+ P    Y+ ++ GY + 
Sbjct: 329 AEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKL 388

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVF 186
              + A+ +  +M+++ V+PD  +++ LI         +D +   + ++  G +     +
Sbjct: 389 GCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTY 448

Query: 187 MALINAYTTCGEFEKARQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
            ALI+AY   G+++ A  +   + AE  V +     SAL+ A +  G   DA  ++ E K
Sbjct: 449 NALIDAYGKQGKYKDAAGLFDKMKAEGLVPN-VLTYSALIDAYSKAGMHQDATSIFVEFK 507

Query: 245 EAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEV 278
            AG  L+P  V+  +LI+     G +   + LL+E+
Sbjct: 508 RAG--LKPDVVLYSSLIDSCCKCGLVEDAVVLLQEM 541



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/259 (20%), Positives = 113/259 (43%), Gaps = 5/259 (1%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHAC-EESYEFNLVRRIYPM 71
           +Y  +++      +   AL V + M +    P+  T N+I+ AC +   +      I+  
Sbjct: 236 AYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKKALDIFEE 295

Query: 72  ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131
           +    ++P+  TF S+I++  +   ++ +  +  +++   +      YN ++    +   
Sbjct: 296 MQKEGVEPDRITFNSLIAVCSRGSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQ 355

Query: 132 VQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLKSAGGQITKYVFMA 188
           ++ A  ++  M   N+ P+  T+S +I         E+ I  Y  +K +G +  +  +  
Sbjct: 356 MELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNT 415

Query: 189 LINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           LI+ Y   G F+ A     D E + +K+     +AL+ A    G+  DA  +++++K  G
Sbjct: 416 LIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEG 475

Query: 248 CNLEPRAVIALIEHLNSEG 266
                    ALI+  +  G
Sbjct: 476 LVPNVLTYSALIDAYSKAG 494



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/333 (20%), Positives = 135/333 (40%), Gaps = 50/333 (15%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  LI   C   ++ +A  ++  M    + P+  T ++++    +   F     +Y  +
Sbjct: 342 TYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDM 401

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK--- 129
               ++P+  ++ ++I +  K+  FD A +   D++ + L      YNA++  Y ++   
Sbjct: 402 KESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALIDAYGKQGKY 461

Query: 130 KDVQG--------------------------------ALMVLKEMEQANVKPDSQTFSYL 157
           KD  G                                A  +  E ++A +KPD   +S L
Sbjct: 462 KDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSSL 521

Query: 158 IHNCSN---EEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVK 214
           I +C      ED +   +++  AG Q     + +LI+AY   G+ +       +  I V 
Sbjct: 522 IDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRNGQVDNVEAAKGNMPINVF 581

Query: 215 SRSEVKSA--LVSALASHGRTSD------AIIVYEEIKEAGCNLEPRAVI--ALIEHLNS 264
           ++   +S   +   L S    +D      A+ V+ E+++ G  L+P  V   A++   + 
Sbjct: 582 NKVGDRSTEIICKTLTSQQNANDHTGVLAAVSVFHEMQQFG--LKPNVVTFSAILNACSR 639

Query: 265 EGELNRLIQLLEEVHDPDYWMDGCCRLILHCVR 297
              L     LLE++   D W+ G    +L  +R
Sbjct: 640 CSSLQEASVLLEQMRFFDSWVYGIAHGLLMGLR 672



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 80/173 (46%), Gaps = 5/173 (2%)

Query: 80  NSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK-DVQGALMV 138
           N   + +M+S   +      A  +   +K+    P    YN I+    +   D++ AL +
Sbjct: 233 NVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKKALDI 292

Query: 139 LKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTT 195
            +EM++  V+PD  TF+ LI  CS     ED  + + +++  G +   + +  LI+A   
Sbjct: 293 FEEMQKEGVEPDRITFNSLIAVCSRGSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCK 352

Query: 196 CGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAG 247
            G+ E A  ++    +   S + V  S ++      G   +AI +Y ++KE+G
Sbjct: 353 GGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESG 405


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 127/286 (44%), Gaps = 11/286 (3%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQ---GELVPSTETINSILHACEESY 60
           +L   P+  SY  L+   CD  +   AL+++  M     G   P   +  ++++   +  
Sbjct: 151 ELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEG 210

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           + +     Y  +    + P+  T+ S+I+   K +  D A  +L+ + +  +MP    YN
Sbjct: 211 DSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYN 270

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI-HNCSNEE--DIIKYYEQLKSA 177
           +I+ GY      + A+  LK+M    V+PD  T+S L+ + C N    +  K ++ +   
Sbjct: 271 SILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKR 330

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDA 236
           G +     +  L+  Y T G   +   ++ L     +     V S L+ A A  G+   A
Sbjct: 331 GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQA 390

Query: 237 IIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHD 280
           ++V+ ++++ G N  P AV   A+I  L   G +   +   E++ D
Sbjct: 391 MLVFSKMRQQGLN--PNAVTYGAVIGILCKSGRVEDAMLYFEQMID 434



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 62/319 (19%), Positives = 125/319 (39%), Gaps = 39/319 (12%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA----------- 55
           + P++ +Y  +I   C   +V  A+   EQM+   L P     NS++H            
Sbjct: 402 LNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAE 461

Query: 56  -----------CEESYEFNLV-------------RRIYPMICHHNLKPNSETFRSMISLN 91
                      C  +  FN +              +++ ++    +KPN  T+ ++I+  
Sbjct: 462 ELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGY 521

Query: 92  VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151
                 D A  LL  +  + L P    Y+ ++ GY +   ++ AL++ KEME + V PD 
Sbjct: 522 CLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDI 581

Query: 152 QTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
            T++ ++             + Y ++  +G QI    +  +++        + A Q+  +
Sbjct: 582 ITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQN 641

Query: 209 -AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
              + +K  +   + ++ AL   GR  +A  ++      G          + E++  +G 
Sbjct: 642 LCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGL 701

Query: 268 LNRLIQLLEEVHDPDYWMD 286
           L  L QL   + D    +D
Sbjct: 702 LEELDQLFLSMEDNGCTVD 720



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/280 (17%), Positives = 107/280 (38%), Gaps = 39/280 (13%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  L+ Y C   +   A  + + M +  L P   T  ++L           + 
Sbjct: 297 VEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 356

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +  ++  + + P+   F  +I    K    D A  +   +++  L P A  Y A++   
Sbjct: 357 GLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGIL 416

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN----------------------CSN- 163
            +   V+ A++  ++M    + P +  ++ LIH                       C N 
Sbjct: 417 CKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNT 476

Query: 164 ------------EEDII---KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
                       E  +I   K +E +   G +     +  LIN Y   G+ ++A +++  
Sbjct: 477 IFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSG 536

Query: 209 -AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
              + +K  +   S L++      R  DA+++++E++ +G
Sbjct: 537 MVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSG 576


>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
          Length = 553

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 126/265 (47%), Gaps = 20/265 (7%)

Query: 26  KVHV-ALDVVEQMV---QGE--LVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKP 79
           KV+V A+ V +QM+    GE  + P   T   ++ +C     ++L ++++  +     K 
Sbjct: 136 KVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKS 195

Query: 80  NSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVL 139
           N+    S++ + VK    D A+ + +++ E +   T   + AI++GY R      AL   
Sbjct: 196 NTVVENSLVEMYVKCDSLDDAHRVFEEMTERD--ATIFSWTAIVSGYARIGCYADALEFF 253

Query: 140 KEMEQANVKPDSQTFSYLIHNCS--NEEDIIKYYEQLKSAGGQITKY-VFMALINAYTTC 196
           + M+   ++PD  +   ++ +C+     ++ K+        G +    V  ALI  Y  C
Sbjct: 254 RRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKC 313

Query: 197 GEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255
           G  ++ R++       +K R  +  S ++  LA+HGR  +AI +++E+++A   +EP  +
Sbjct: 314 GSIDQGRRLFDQ----MKERDVISWSTMIVGLANHGRAREAIELFQEMQKA--KIEPSII 367

Query: 256 --IALIEHLNSEGELNRLIQLLEEV 278
             + L+      G LN  ++  E +
Sbjct: 368 TFVGLLTACAHAGLLNEGLRYFESM 392



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 105/228 (46%), Gaps = 16/228 (7%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL+   +M    + P   ++ S+L  C +     L + I+          N     ++I 
Sbjct: 249 ALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIE 308

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K    D    L D +KE +++  ++M    +A + R ++   A+ + +EM++A ++P
Sbjct: 309 MYAKCGSIDQGRRLFDQMKERDVISWSTMIVG-LANHGRARE---AIELFQEMQKAKIEP 364

Query: 150 DSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYV--FMALINAYTTCGEFEKARQ 204
              TF  L+  C++     + ++Y+E +K     I   V  +  L+N     G  ++A +
Sbjct: 365 SIITFVGLLTACAHAGLLNEGLRYFESMKR-DYNIEPGVEHYGCLVNLLGLSGRLDQALE 423

Query: 205 VVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP 252
           +V   ++P K  S +  +L+S+  SHG    A+I  E + E    LEP
Sbjct: 424 LV--KKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHLLE----LEP 465



 Score = 42.7 bits (99), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 145/345 (42%), Gaps = 40/345 (11%)

Query: 114 PTASMYNAIMAGYFRKKDVQGALMVLKEM-----EQANVKPDSQTFSYLIHNCSNEEDII 168
           P A +YNA++  Y   K    A+ V K+M      +  + PD  TF +++ +C+     +
Sbjct: 120 PNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAG----L 175

Query: 169 KYYEQLKSAGGQITKY-------VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK- 220
             Y+  K   G + K+       V  +L+  Y  C   + A +V    E+  +  +    
Sbjct: 176 MCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVF--EEMTERDATIFSW 233

Query: 221 SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           +A+VS  A  G  +DA+  +  ++  G  +EP   I+L+  L    +L  L +L + +H 
Sbjct: 234 TAIVSGYARIGCYADALEFFRRMQMVG--IEPDE-ISLVSVLPDCAQLGAL-ELGKWIH- 288

Query: 281 PDYWMD--GCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDP 338
              + D  G  R I  C    ++ +    + Q +  F  D+M      S     +   + 
Sbjct: 289 --IYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLF--DQMKERDVISWSTMIVGLANH 344

Query: 339 PDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLS 398
              +  ++L Q ++ +  + PS      LL AC +A  L       + +E+    YN+  
Sbjct: 345 GRAREAIELFQEMQ-KAKIEPSIITFVGLLTACAHAGLLNEG---LRYFESMKRDYNIEP 400

Query: 399 YLWMYKAFL----ASGNRKSASKLLSKMPK--DDPHVRFVIQACK 437
            +  Y   +     SG    A +L+ KMP+  D P    ++ +C+
Sbjct: 401 GVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCR 445


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/294 (20%), Positives = 133/294 (45%), Gaps = 4/294 (1%)

Query: 7    ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
             +P + ++  LI   C   KV  A  ++E M      P   T N++++      +     
Sbjct: 1186 FSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDAT 1245

Query: 67   RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +++  +    +K N  ++  +I+   K +  D A+   ++++   L P+   YN ++   
Sbjct: 1246 KLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGAL 1305

Query: 127  FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITK 183
             +   V+ A  +  EM+         T+  L+   C N   E+ +  ++ +K    +   
Sbjct: 1306 CQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNI 1365

Query: 184  YVFMALINAYTTCGEFEKA-RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             VF  L++     G+ E+A +Q    ++  ++  +   + L++ L + G  S+A+ +  +
Sbjct: 1366 EVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQ 1425

Query: 243  IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCV 296
            ++E GC  +      +I++L  E E++  IQLLEE+ + ++  D     +L C+
Sbjct: 1426 MEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLLCL 1479



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 78/436 (17%), Positives = 180/436 (41%), Gaps = 33/436 (7%)

Query: 4    KLEITPSSASYKKLITYSC--DLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYE 61
            K+    S + +++ +   C   ++K++ A+ + ++ +  E +P T+T N +L +  +   
Sbjct: 902  KIGTKASLSPFERYVRDQCRFGIIKLNDAIKLFDRSLCSEPMPCTDTFNHLLASVAKLGY 961

Query: 62   FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
            ++ V  +Y  I    ++P+  T   +I     ++     + +     +    P A     
Sbjct: 962  YSTVFPMYRKINDVGIQPDLYTLNILIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTT 1021

Query: 122  IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLK-SA 177
            ++ G + +  +  A+ +  EM +  +  D++T+  LI+           IK +E++K + 
Sbjct: 1022 LVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAIKLHEKMKGNC 1081

Query: 178  GGQITKY--VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSD 235
             G +  Y  +  AL     T    +   +++    +P      V S+L+  L   GR  +
Sbjct: 1082 KGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILP---DVVVYSSLMDGLCRFGRLKE 1138

Query: 236  AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYW-----MD 286
            A+  ++E++  G + +     +LI  L+  G    +   L  + D    PD +     +D
Sbjct: 1139 ALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILID 1198

Query: 287  GCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLD 346
            G C+         ++  A  +L+ ++ K K+ ++          C +       ++    
Sbjct: 1199 GLCKE-------GKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVG-----QLEDATK 1246

Query: 347  LLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAF 406
            L + + D  G+  +    + L+      + +  A   ++E    GL  + ++Y  +  A 
Sbjct: 1247 LFESLADR-GIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGAL 1305

Query: 407  LASGNRKSASKLLSKM 422
              SG  ++A KL  +M
Sbjct: 1306 CQSGRVRTAQKLFVEM 1321


>gi|356508736|ref|XP_003523110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 680

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 96/211 (45%), Gaps = 17/211 (8%)

Query: 9   PSSASYKKLITY--------SCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           P   +Y  +I Y        S  L K++  ++  +  + G L      +N I+    ++ 
Sbjct: 202 PDFVNYSSIIQYLTRSNKIDSPILQKLYAEIETDKIEIDGHL------MNDIIVGFSKAG 255

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           +     R   M   + L P   T  ++I           A +L ++++E  L P    YN
Sbjct: 256 DPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEIRENGLEPRTRAYN 315

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSA 177
           A++ GY R   ++ A  V+ EME+A VKPD QT+S LI    +    E      ++++++
Sbjct: 316 ALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDVYAHAGRWESARIVLKEMEAS 375

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLD 208
             Q   YVF  ++  Y   GE++K+ QV+ D
Sbjct: 376 NVQPNSYVFSRILANYRDKGEWQKSFQVLKD 406



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 140/319 (43%), Gaps = 20/319 (6%)

Query: 115 TASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH--NCSNEED---IIK 169
           T   YNA++    R  DV+ AL ++ +M +   +PD   +S +I     SN+ D   + K
Sbjct: 168 TPLTYNALIGACARNGDVEKALNLMSKMRRDGYQPDFVNYSSIIQYLTRSNKIDSPILQK 227

Query: 170 YYEQLKSAGGQITKYVFMALINAYTTCGEFEKA-RQVVLDAEIPVKSRSEVKSALVSALA 228
            Y ++++   +I  ++   +I  ++  G+  +A R + +     +  +     A++ AL 
Sbjct: 228 LYAEIETDKIEIDGHLMNDIIVGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALG 287

Query: 229 SHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC 288
           + GRT +A  ++EEI+E G     RA  AL++     G L     ++ E+       D  
Sbjct: 288 NSGRTHEAEALFEEIRENGLEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQ 347

Query: 289 CRLIL-----HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQI 343
              +L     H  R++   SA  +LK+++     +     Y FS I       D  + Q 
Sbjct: 348 TYSLLIDVYAHAGRWE---SARIVLKEME---ASNVQPNSYVFSRILANY--RDKGEWQK 399

Query: 344 GLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMY 403
              +L+ +K   G+ P R   + ++        L  A   ++   + G+P +++++  + 
Sbjct: 400 SFQVLKDMKSS-GVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIPPDIVTWNTLI 458

Query: 404 KAFLASGNRKSASKLLSKM 422
                SG    A +L S+M
Sbjct: 459 DCHCKSGRHDMAEELFSEM 477



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 57/282 (20%), Positives = 114/282 (40%), Gaps = 43/282 (15%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           + H A  + E++ +  L P T   N++L     +        +   +    +KP+ +T+ 
Sbjct: 291 RTHEAEALFEEIRENGLEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTYS 350

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
            +I +      ++SA  +L +++  N+ P + +++ I+A Y  K + Q +  VLK+M+ +
Sbjct: 351 LLIDVYAHAGRWESARIVLKEMEASNVQPNSYVFSRILANYRDKGEWQKSFQVLKDMKSS 410

Query: 146 NVKPDSQTFSYLI-----HNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFE 200
            V+PD   ++ +I     +NC +    +  +E++ S G       +  LI+ +   G  +
Sbjct: 411 GVQPDRHFYNVMIDTFGKYNCLDHA--MATFERMLSEGIPPDIVTWNTLIDCHCKSGRHD 468

Query: 201 KARQV-----------------VLDAEIPVKSRSEVKSALVSALASHG------------ 231
            A ++                 ++   +  + R E  +A +S + S G            
Sbjct: 469 MAEELFSEMQQRGYSPCITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTLV 528

Query: 232 -------RTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
                  R SDAI   E +K  G         ALI      G
Sbjct: 529 DVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRG 570



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 85/210 (40%), Gaps = 38/210 (18%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P   ++  LI   C   +  +A ++  +M Q    P   T N ++++  E   +  V 
Sbjct: 447 IPPDIVTWNTLIDCHCKSGRHDMAEELFSEMQQRGYSPCITTYNIMINSMGEQQRWEQVT 506

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
                +    L+PNS T+ +++ +  K   F  A   L+ LK     PT++MYNA++  Y
Sbjct: 507 AFLSKMQSQGLQPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAY 566

Query: 127 ------------FRKKDVQG-----------------------ALMVLKEMEQANVKPDS 151
                       FR    +G                       A  VL+ M++ N++PD 
Sbjct: 567 AQRGLSELAVNAFRLMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPDV 626

Query: 152 QTFSYLIHNCSNEEDIIK---YYEQLKSAG 178
            T++ L+      E   K    YE++ ++G
Sbjct: 627 VTYTTLMKALIRVEKFQKVPAVYEEMVASG 656



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 30/151 (19%), Positives = 65/151 (43%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+S +Y  L+       +   A++ +E +      P++   N++++A  +     L  
Sbjct: 517 LQPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAV 576

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
             + ++    L P+     S+I+   + +    A+++L  +KE N+ P    Y  +M   
Sbjct: 577 NAFRLMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLMKAL 636

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYL 157
            R +  Q    V +EM  +   PD +  + L
Sbjct: 637 IRVEKFQKVPAVYEEMVASGCTPDRKARAML 667



 Score = 38.5 bits (88), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 42/229 (18%), Positives = 94/229 (41%), Gaps = 4/229 (1%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+   E+M+   + P   T N+++    +S   ++   ++  +      P   T+  MI+
Sbjct: 435 AMATFERMLSEGIPPDIVTWNTLIDCHCKSGRHDMAEELFSEMQQRGYSPCITTYNIMIN 494

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              + + ++   + L  ++   L P +  Y  ++  Y +      A+  L+ ++    KP
Sbjct: 495 SMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKP 554

Query: 150 DSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
            S  ++ LI+  +     E  +  +  + + G   +     +LINA+       +A  V+
Sbjct: 555 TSTMYNALINAYAQRGLSELAVNAFRLMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVL 614

Query: 207 -LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRA 254
               E  ++      + L+ AL    +      VYEE+  +GC  + +A
Sbjct: 615 QYMKENNIEPDVVTYTTLMKALIRVEKFQKVPAVYEEMVASGCTPDRKA 663


>gi|326509863|dbj|BAJ87147.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 757

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 132/285 (46%), Gaps = 22/285 (7%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L IT ++ SY  ++       +  +A  V   M+   + P+  T N+++       +  
Sbjct: 210 ELGITRTALSYNAVLKAILCRGREAMARRVYNAMIADGVAPTLSTYNTLIWGFGLCKKME 269

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              R++  +  H + P+  T+ ++++  V+  D +SA  + D++ E  L   +  YN ++
Sbjct: 270 SAVRVFGDMKGHGVAPDVTTYNTLLNAWVRKGDLESARKVFDEMPEAGLERNSISYNVMI 329

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKS----AGG 179
            GY     V+ AL +  EM +  ++   +TF+ L+    ++E   K  E  K+    A  
Sbjct: 330 KGYVDANKVEEALGLFTEMGEKGLRLTEKTFAVLMPGLCDDEG--KAAEARKAVADMAER 387

Query: 180 QIT---KYVFMALINAYTTCGEFEKARQVVLDA----EIPVKSRSEVKSALVSALASHGR 232
           ++T   K VF+ L++     G+F+ A +V   +     + V  R      L+ +L + G+
Sbjct: 388 RLTPKDKSVFLRLVSTLCKAGDFDGALEVHKKSGQFKHVLVDPRQ--YGVLMESLCAGGK 445

Query: 233 TSDAIIVYEEIKEAGCNLEPRAVI-------ALIEHLNSEGELNR 270
              A+ V +E+ E G  L P++ +        +IE+L + G  ++
Sbjct: 446 CDGAVQVLDELLEKGTLLSPKSPVLEAPAYNPVIEYLCNNGNTDK 490


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 137/321 (42%), Gaps = 43/321 (13%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           I+P+  +Y  LI   C L +      ++ +MV  +++P   T+N+++ A C+E       
Sbjct: 241 ISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAE-A 299

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +  M+ H  ++PN  T+ +++  +    + D A  + D +   + +     YN ++ G
Sbjct: 300 HDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLING 359

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQIT 182
           Y + + V  A+ + +EM +  + P++ T++ LIH   +    +D I  + ++  A GQI 
Sbjct: 360 YCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEM-VARGQIP 418

Query: 183 KYVF-----------------MALINA------------YTT-------CGEFEKARQVV 206
             V                  MAL+ A            YTT        GE E AR + 
Sbjct: 419 DLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLF 478

Query: 207 LD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
            + +   ++      + ++  L   G  ++A  ++ E+ + GC+        +       
Sbjct: 479 SNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRN 538

Query: 266 GELNRLIQLLEEVHDPDYWMD 286
            E  R I+LLEE+    + +D
Sbjct: 539 NEALRTIELLEEMLARGFSVD 559



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 134/324 (41%), Gaps = 30/324 (9%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  LI   C +     A+ ++  M QG   P+    ++++ +  +  +      I
Sbjct: 173 PNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNI 232

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    + PN  T+ S+I    K+ ++    +L++++ +  +MP     N ++    +
Sbjct: 233 FSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCK 292

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLI--HNCSNEEDI-IKYYEQLKSAGGQITKYV 185
           +  V  A  V+  M    V+P+  T++ L+  H   NE D+ +K ++ +           
Sbjct: 293 EGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVIS 352

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK------SALVSALASHGRTSDAIIV 239
           +  LIN Y      +KA  +  +      SR E+       + L+  L   GR  DAI +
Sbjct: 353 YNTLINGYCKIQSVDKAMYLFEEM-----SRQELTPNTVTYNTLIHGLCHVGRLQDAISL 407

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDYW-----MDGCCR 290
           + E+   G   +      L ++L     L++ + LL+ +     DPD       +DG CR
Sbjct: 408 FHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCR 467

Query: 291 LILHCVRFKQLSSATDLLKQLKDK 314
                    +L  A DL   L  K
Sbjct: 468 A-------GELEDARDLFSNLSSK 484



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/173 (17%), Positives = 74/173 (42%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           ++ E+TP++ +Y  LI   C + ++  A+ +  +MV    +P   T  ++     ++   
Sbjct: 377 SRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHL 436

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           +    +   I   N  P+ + + +++    +  + + A  L  +L    L P    YN +
Sbjct: 437 DKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIM 496

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK 175
           + G  ++  +  A  +  EM +    P+  T++ +        + ++  E L+
Sbjct: 497 IHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLE 549



 Score = 42.4 bits (98), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 66/164 (40%), Gaps = 1/164 (0%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M A+ +I P   +Y+ L  Y C    +  A+ +++ +      P  +   +IL     + 
Sbjct: 411 MVARGQI-PDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAG 469

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           E    R ++  +    L+PN  T+  MI    K      A  L  ++ +    P    YN
Sbjct: 470 ELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYN 529

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE 164
            I  G+ R  +    + +L+EM       D  T + L+   S++
Sbjct: 530 LITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDD 573


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 87/422 (20%), Positives = 173/422 (40%), Gaps = 51/422 (12%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  +I   C + +   A  + ++M +    P+  T N ++ +  +    N    I
Sbjct: 198 PTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDI 257

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    + P+  T+ S+I      + +  A +LL+++  +N+MP    +N ++    +
Sbjct: 258 FSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICK 317

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYV 185
           +  V  A  V K M +  V+PD  T+S L++  S   +I+   K ++ + + G +   + 
Sbjct: 318 EGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFS 377

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIK 244
           +  LI  Y      ++A+Q+  +      +   V  + L+  L   GR  +A  +++ + 
Sbjct: 378 YNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMH 437

Query: 245 EAGCNLEPRAVIALIEHLNSEGELN---RLIQLLEEVH-DPDYWMDGCCRLILHCVRFKQ 300
             G   +      L++    EG L    RL ++++  +  PD  M     LI    +F  
Sbjct: 438 SNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNI--LIDAMCKFGN 495

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS 360
           L  A  L                  FSE+F Q      P+VQI   ++           +
Sbjct: 496 LKDARKL------------------FSELFVQGLL---PNVQIYTTII-----------N 523

Query: 361 RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420
             C + LL   + A         ++  E  G P +  SY  + + FL   +   A++L+ 
Sbjct: 524 NLCKEGLLDEALEA---------FRNMEGDGCPPDEFSYNVIIRGFLQYKDESRAAQLIG 574

Query: 421 KM 422
           +M
Sbjct: 575 EM 576



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/285 (20%), Positives = 120/285 (42%), Gaps = 8/285 (2%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           L I P+  ++  L+   C   KV  A  V + M +  + P   T +S+++      E   
Sbjct: 299 LNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVE 358

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
            R+++  +     KP++ ++  +I    K K  D A  L +++    L P    YN ++ 
Sbjct: 359 ARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIH 418

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK- 183
           G  +   ++ A  + K M      PD  T+S L+     E  + K +   +       K 
Sbjct: 419 GLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKP 478

Query: 184 --YVFMALINAYTTCGEFEKARQVVLDAEIPVKS---RSEVKSALVSALASHGRTSDAII 238
              ++  LI+A    G  + AR+  L +E+ V+      ++ + +++ L   G   +A+ 
Sbjct: 479 DIAMYNILIDAMCKFGNLKDARK--LFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALE 536

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY 283
            +  ++  GC  +  +   +I       + +R  QL+ E+ D  +
Sbjct: 537 AFRNMEGDGCPPDEFSYNVIIRGFLQYKDESRAAQLIGEMRDRGF 581



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/255 (20%), Positives = 114/255 (44%), Gaps = 7/255 (2%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVA-LDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           E  P    + KL++    + + + A + + +QM    L P   T++ ++         +L
Sbjct: 89  EPLPCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTLSILIDCFSHLQRVDL 148

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
              ++  +    L+P++ TF ++I+   K+  F  A    DD +     PT   Y  I+ 
Sbjct: 149 AFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIIN 208

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQI 181
           G  +  +   A  + K+ME+A  +P+  T++ LI + C ++   + +  +  +K+     
Sbjct: 209 GLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISP 268

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
             + + +LI        +++A  ++ +   + +       + LV A+   G+ S+A  V+
Sbjct: 269 DIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVF 328

Query: 241 EEIKEAGCNLEPRAV 255
           + + E G  +EP  V
Sbjct: 329 KTMTEMG--VEPDVV 341


>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 591

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 116/235 (49%), Gaps = 17/235 (7%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHH-NLKPNSETFRSMI 88
           A++   +M    L     T+  +L AC    + NL ++++  I H+ ++K +     +++
Sbjct: 196 AVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRHYIDMKADVFVGNALL 255

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
            + +K  D +SAY + D++   N++     +NA+++G   +   + AL   + M+   VK
Sbjct: 256 DMYLKCDDLNSAYKVFDEMPVKNVVT----WNAMISGLAYQGRYREALDTFRMMQDKGVK 311

Query: 149 PDSQTFSYLIHNCSNEE--DIIKY-YEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           PD  T   ++++C+N    +I K+ +  ++       K+V  AL++ Y  CG  ++A +V
Sbjct: 312 PDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRV 371

Query: 206 VLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
               +     R +V S  A++  LA HG  + A  V+ E+   G  +EP  V  L
Sbjct: 372 FESMK-----RRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVG--IEPNEVTFL 419



 Score = 40.0 bits (92), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 44/228 (19%), Positives = 94/228 (41%), Gaps = 26/228 (11%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           ALD    M    + P   T+  +L++C       + + ++  +  +++  +     +++ 
Sbjct: 298 ALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNALLD 357

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K    D A+ + + +K  ++      Y A++ G     +   A  V  EM +  ++P
Sbjct: 358 MYAKCGSIDEAFRVFESMKRRDVYS----YTAMIFGLALHGEANWAFQVFSEMFRVGIEP 413

Query: 150 DSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYV-------FMALINAYTTCGEF 199
           +  TF  L+  CS+   +    KY+ Q+        KY        +  +I+     G  
Sbjct: 414 NEVTFLGLLMACSHGGLVAEGKKYFFQMSD------KYKLRPQAEHYGCMIDLLGRAGLV 467

Query: 200 EKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEIKE 245
           ++A +++   EI    R +V +  AL+ A   HG       V +++ E
Sbjct: 468 KEAEEIIHKMEI----RPDVFACGALLGACRIHGNVDIGESVMQKLTE 511


>gi|242046162|ref|XP_002460952.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
 gi|241924329|gb|EER97473.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
          Length = 796

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 82/422 (19%), Positives = 186/422 (44%), Gaps = 16/422 (3%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   ++  L+       +   A+ V+++M      PS  T NS++ A  +         +
Sbjct: 289 PDKVTFNSLLDVYGKARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALEL 348

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    +KP+  T+ ++IS   +I   D+A +   ++      P    YNA++  +  
Sbjct: 349 KQEMEFRGMKPDVVTYTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNALIKMHGV 408

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLKSAGGQITKYV 185
           +      ++V  ++  A   PD  T++ L+        + ++   ++++K AG    +  
Sbjct: 409 RGKFTEMMIVFDDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDT 468

Query: 186 FMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +++LI++Y+ CG F++A ++     E  +       +A++SALA  GR   A  ++ E++
Sbjct: 469 YVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAEME 528

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDYWMDGCCRLILHCVRFKQ 300
           +  C  +  +  +L+    +  +L+++  L E+++    +P  W+     L+L   +   
Sbjct: 529 DRDCKPDELSYSSLLHAYANAKKLDKMKALSEDIYAQRIEPHNWL--VKTLVLVNNKVNS 586

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS 360
           LS      ++L+ +    ++ +      I+ +        V+   ++L  +K E  +  S
Sbjct: 587 LSETEKAFQELRRRRCSLDINVLNAMVSIYGKNKM-----VKKVEEVLTLMK-ENSINHS 640

Query: 361 RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420
               + L+       D ++   I  E +++G+  +  SY  +  A+   G  K AS+L S
Sbjct: 641 AATYNSLMHMYSRLGDCEKCEAILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFS 700

Query: 421 KM 422
           +M
Sbjct: 701 EM 702



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 72/360 (20%), Positives = 151/360 (41%), Gaps = 51/360 (14%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACE----------- 57
           P +++Y  L++      +   A+ V  +MV G + P+  T N +LH              
Sbjct: 183 PDASAYTALVSEFSRAGRFRDAVAVFRRMVDGGVQPALVTYNVVLHVYSKMSVPWKEVVV 242

Query: 58  ------------ESYEFNLV-----RR--------IYPMICHHNLKPNSETFRSMISLNV 92
                       + Y +N +     RR        ++  +     +P+  TF S++ +  
Sbjct: 243 LVDSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYG 302

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
           K +  + A  +L  ++     P+   YN++++ Y +   ++ AL + +EME   +KPD  
Sbjct: 303 KARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVV 362

Query: 153 TFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA 209
           T++ LI        I   +  Y ++   G       + ALI  +   G+F +   V  D 
Sbjct: 363 TYTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEMMIVFDD- 421

Query: 210 EIPVKSRSEVK-----SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
              ++S   V      + L++    +G  S+   V++E+K+AG   E    ++LI   + 
Sbjct: 422 ---LRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSR 478

Query: 265 EGELNRLIQLLEEVHDPDYWMD-GCCRLILHCV-RFKQLSSATDLLKQLKDK-FKDDEMA 321
            G  ++ +++ + + +   + D      +L  + R  +   A  L  +++D+  K DE++
Sbjct: 479 CGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAEMEDRDCKPDELS 538



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 71/162 (43%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           +P+  +Y  LI       K    + V + +     VP   T N++L    ++   + V  
Sbjct: 393 SPNLCTYNALIKMHGVRGKFTEMMIVFDDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSG 452

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           ++  +      P  +T+ S+IS   +   FD A  +   + E  + P  S YNA+++   
Sbjct: 453 VFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALA 512

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK 169
           R      A  +  EME  + KPD  ++S L+H  +N + + K
Sbjct: 513 RGGRWVQAEKLFAEMEDRDCKPDELSYSSLLHAYANAKKLDK 554



 Score = 46.2 bits (108), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 31/146 (21%), Positives = 72/146 (49%), Gaps = 9/146 (6%)

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
           V  +  ++  +++  ++ T+ S++ +  ++ D +   ++L ++K   + P    YN ++ 
Sbjct: 625 VEEVLTLMKENSINHSAATYNSLMHMYSRLGDCEKCEAILTEIKSSGMRPDRYSYNTVIY 684

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH----NCSNEE--DIIKYYEQLKSAG 178
            Y RK  ++ A  +  EM+ + VKPD  T++  I     N   EE  D+++Y   L + G
Sbjct: 685 AYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANLMFEEAIDLVRY---LVAQG 741

Query: 179 GQITKYVFMALINAYTTCGEFEKARQ 204
            +  +  + +++  Y   G   +A+ 
Sbjct: 742 CKPNERTYNSILEGYCRHGRMVEAKS 767



 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 76/156 (48%), Gaps = 6/156 (3%)

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           +M+S+  K K       +L  +KE ++  +A+ YN++M  Y R  D +    +L E++ +
Sbjct: 611 AMVSIYGKNKMVKKVEEVLTLMKENSINHSAATYNSLMHMYSRLGDCEKCEAILTEIKSS 670

Query: 146 NVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
            ++PD  +++ +I+    +   ++  + + ++K +G +     +   I +Y     FE+A
Sbjct: 671 GMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANLMFEEA 730

Query: 203 RQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDA 236
             +V  L A+   K      ++++     HGR  +A
Sbjct: 731 IDLVRYLVAQ-GCKPNERTYNSILEGYCRHGRMVEA 765


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/433 (20%), Positives = 178/433 (41%), Gaps = 26/433 (6%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETI--NSILHACEESYE 61
           +L   P   SY  L+   CD  K   A D++  M +G  V S + +  N+++    +  +
Sbjct: 175 ELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGD 234

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
            N    ++  +    + P+  T+ S++    K +  D A + L  +    ++P    YN 
Sbjct: 235 VNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNN 294

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAG 178
           ++ GY      + A+ V KEM + ++ PD  TF+ L+ +      I +    ++ +   G
Sbjct: 295 LIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKG 354

Query: 179 GQITKYVFMALINAYTTCG---EFEKARQVVL-DAEIPVKSRSEVKSALVSALASHGRTS 234
                + +  ++N Y T G   +      ++L D   PV     V   L+ A A+ G   
Sbjct: 355 QNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNV---LIKAYANCGMLD 411

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN----RLIQLLEEVHDPDYWMDGCCR 290
            A+I++ E+++ G          +I  L   G+++    +  Q++++   PD +   C  
Sbjct: 412 KAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHC-- 469

Query: 291 LILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQF 350
           LI        L  A +L+ ++ +     ++ +        C++      D Q   DL   
Sbjct: 470 LIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRV--MDAQNIFDLTV- 526

Query: 351 IKDELGLPPSRKCLDFLL-GACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLAS 409
               +GL P+      L+ G C+  + +++A  ++    +AG+  N + Y  +   +   
Sbjct: 527 ---NVGLHPTAVVYSMLMDGYCLVGK-MEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKI 582

Query: 410 GNRKSASKLLSKM 422
           G       L  +M
Sbjct: 583 GRIDEGLSLFREM 595



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/291 (18%), Positives = 124/291 (42%), Gaps = 18/291 (6%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           +  +I   C L +V  A ++ +  V   L P+    + ++       +     R++  + 
Sbjct: 502 FSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMV 561

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
              ++PN   + ++++   KI   D   SL  ++ +  + P+  +YN I+ G F      
Sbjct: 562 SAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTV 621

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHN-----CSNEEDIIKYYEQLKSAGGQITKYVFMA 188
            A +   EM ++ +  +  T+S ++       C +E   I  +++L++   +I       
Sbjct: 622 PAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEA--IFLFKELRAMNVKIDIITLNT 679

Query: 189 LINAYTTCGEFEKARQVVLDAEIPVKSRSEVK------SALVSALASHGRTSDAIIVYEE 242
           +I         E+A+   L A I   SRS +       S +++ L   G   +A  ++  
Sbjct: 680 MIAGMFQTRRVEEAKD--LFASI---SRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSS 734

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL 293
           ++ AGC  + R +  ++  L  + E+ R    L ++ + ++ ++    ++L
Sbjct: 735 MQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTTMLL 785



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 78/175 (44%), Gaps = 3/175 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P+   Y  L+   C + ++   L +  +M+Q  + PST   N I+    E+      +
Sbjct: 565 IEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAK 624

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
             +  +    +  N  T+  ++    K + FD A  L  +L+ MN+       N ++AG 
Sbjct: 625 VKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGM 684

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAG 178
           F+ + V+ A  +   + ++ + P   T+S +I N   E   E+    +  +++AG
Sbjct: 685 FQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAG 739


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 131/320 (40%), Gaps = 12/320 (3%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  + PS   Y  LI   C   K+  A  +   M    L P+  T + ++ +  +  + +
Sbjct: 348 KFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLD 407

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
           +       +    +K     + S+IS + K+    +A SL D++    L P   +Y +++
Sbjct: 408 VALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLI 467

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQ 180
           +GY ++ ++  A  +  EM    + P++ TF+ LI    +   +    K + ++      
Sbjct: 468 SGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVI 527

Query: 181 ITKYVFMALINAY----TTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDA 236
             +  +  LI  +     T   FE   ++V    +P    +     L+S L S GR S+A
Sbjct: 528 PNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVP---DTYTYRPLISGLCSTGRVSEA 584

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCR--LILH 294
                +++     L      AL+     EG L+  +    E+      MD  C   LI  
Sbjct: 585 REFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYG 644

Query: 295 CVRFKQLSSATDLLKQLKDK 314
            +R +   S  DLLKQ+ D+
Sbjct: 645 ILRQQDRRSIIDLLKQMHDQ 664



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 84/422 (19%), Positives = 171/422 (40%), Gaps = 12/422 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
             PS A+   L+        +  A D+V ++ +  + PS    N+++++  +  + +   
Sbjct: 316 FVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAE 375

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  + H  L PN  T+  +I    K    D A   L  + E+ +  T   Y+++++G+
Sbjct: 376 SLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGH 435

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITK 183
            +   ++ A  +  EM    +KP+   ++ LI     E ++    + Y ++   G     
Sbjct: 436 CKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNT 495

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           Y F ALI+         +A ++  +  E  V       + L+      G T  A  + +E
Sbjct: 496 YTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDE 555

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC-RLILHC-VRFKQ 300
           + E G   +      LI  L S G ++   + + ++      ++  C   +LH   +  +
Sbjct: 556 MVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGR 615

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS 360
           L  A D  +++    +   M +  +   I+  +   D   +   +DLL+ + D+ GL P 
Sbjct: 616 LDDALDACREMLG--RGVAMDLVCYSVLIYGILRQQDRRSI---IDLLKQMHDQ-GLRPD 669

Query: 361 RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420
                 ++ A   A +LK A  +W    + G   NV++Y  +       G    A  L  
Sbjct: 670 NVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCR 729

Query: 421 KM 422
           +M
Sbjct: 730 EM 731



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/272 (20%), Positives = 117/272 (43%), Gaps = 11/272 (4%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQM----VQGELVPSTETINSILHACEESYEFNLVRRIY 69
           +  L+   C   ++  ALD   +M    V  +LV  +  I  IL   +     +L+++++
Sbjct: 603 FSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMH 662

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
                  L+P++  + +MI  N K  +   A+ L D +     +P    Y A++ G  + 
Sbjct: 663 ----DQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKI 718

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE--QLKSAGGQITKYVFM 187
             +  A ++ +EM  +N  P+  T++  +   ++E +I K  +   +   G       + 
Sbjct: 719 GLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLANTVTYN 778

Query: 188 ALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA 246
            LI  +   G  ++A +V+++  +  +       S ++      G   +AI ++E +   
Sbjct: 779 ILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNR 838

Query: 247 GCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           G N +  A   LI      GEL +  +L +++
Sbjct: 839 GVNPDTVAYNFLIYGCCVTGELTKAFELRDDM 870



 Score = 46.2 bits (108), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 75/168 (44%), Gaps = 9/168 (5%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY---EFNLV 65
           P+  +Y  LI   C +  +  A  +  +M+    +P+  T     +AC   Y   E N+ 
Sbjct: 703 PNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNT-----YACFLDYLTSEGNIE 757

Query: 66  RRIYPM-ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
           + I    +       N+ T+  +I    K+     A  +L ++ +  + P    Y+ I+ 
Sbjct: 758 KAIQLHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIY 817

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE 172
            Y R+ D++ A+ + + M    V PD+  +++LI+ C    ++ K +E
Sbjct: 818 EYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFE 865



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 47/260 (18%), Positives = 109/260 (41%), Gaps = 18/260 (6%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
            L VV  M+   ++P   T++ +L+      +F +   ++  I    L+P+   + +++ 
Sbjct: 164 GLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVR 223

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              ++KDF  A  ++  ++      + + YN  + G  + + V  A+ +   +    ++ 
Sbjct: 224 SLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRA 283

Query: 150 DSQTFSYLIHN-CSNEEDIIKYYEQLKSAGGQITKYVFMA-------LINAYTTCGEFEK 201
           D  T+  L+   C  EE     +E  +    ++ ++ F+        L++     G    
Sbjct: 284 DVGTYCTLVLGLCKVEE-----FEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGS 338

Query: 202 ARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--AL 258
           A  +V    +  V     V +AL++++   G+  +A  ++  +   G  L P  V    L
Sbjct: 339 AFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKG--LFPNDVTYSIL 396

Query: 259 IEHLNSEGELNRLIQLLEEV 278
           I+     G+L+  +  L ++
Sbjct: 397 IDSFCKRGKLDVALHFLGKM 416


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 82/430 (19%), Positives = 176/430 (40%), Gaps = 26/430 (6%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   SY  +I   C + ++   L ++E+M    L P+  T N ++    ++ +     R+
Sbjct: 286 PDVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERV 345

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    + P+   + ++I    K+ +  SAY L D++++  + P    Y A++ G  +
Sbjct: 346 LREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQ 405

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYV 185
              V  A  +  EM    ++PD  T++ LI     E   ++    + Q+   G       
Sbjct: 406 TGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVT 465

Query: 186 FMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           + AL +    CGE + A +++ +     ++      ++LV+ L   G    A+ + ++++
Sbjct: 466 YTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDME 525

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDP---------DYWMDGCCRLILHC 295
            AG + +      L++      E+ R  +LL ++ D          +  M+G C      
Sbjct: 526 VAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFC------ 579

Query: 296 VRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDEL 355
                L     LLK + +K     M     ++ +  Q    +  +++   ++ + +  + 
Sbjct: 580 -MSGMLEDGEKLLKWMLEK---GIMPNATTYNSLIKQYCIRN--NMRATTEIYRGMCAK- 632

Query: 356 GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSA 415
           G+ P     + L+     AR++K A  + ++    G    V SY  + K F        A
Sbjct: 633 GVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEA 692

Query: 416 SKLLSKMPKD 425
            +L  +M ++
Sbjct: 693 RELFEQMRRE 702



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 95/210 (45%), Gaps = 11/210 (5%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESY-- 60
           K +I+P   +Y  +I   C   +V  A  +  +MV   L P   T  +++   C+E    
Sbjct: 386 KRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMK 445

Query: 61  -EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMY 119
             F+L  ++  M     L PN  T+ ++     K  + D+A  LL ++    L      Y
Sbjct: 446 EAFSLHNQMLQM----GLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTY 501

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGG 179
           N+++ G  +  ++  A+ ++K+ME A   PD+ T++ L+       ++++ +E L+    
Sbjct: 502 NSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLD 561

Query: 180 ---QITKYVFMALINAYTTCGEFEKARQVV 206
              Q T   F  L+N +   G  E   +++
Sbjct: 562 RELQPTVVTFNVLMNGFCMSGMLEDGEKLL 591



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 95/212 (44%), Gaps = 8/212 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           I P    Y  LI   C L  V  A  + ++M + ++ P   T  +++   C+        
Sbjct: 354 IAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEAD 413

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           +  + M+C   L+P+  T+ ++I    K      A+SL + + +M L P    Y A+  G
Sbjct: 414 KLFHEMVCKR-LEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADG 472

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQIT 182
             +  +V  A  +L EM +  ++ +  T++ L++      N +  +K  + ++ AG    
Sbjct: 473 LCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPD 532

Query: 183 KYVFMALINAYTTCGEFEKARQVV---LDAEI 211
              +  L++AY    E  +A +++   LD E+
Sbjct: 533 AVTYTTLMDAYCKSREMVRAHELLRQMLDREL 564



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/150 (19%), Positives = 69/150 (46%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           E+ P+  ++  L+   C    +     +++ M++  ++P+  T NS++            
Sbjct: 563 ELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRAT 622

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             IY  +C   + P+  T+  +I  + K ++   A+ L  D+       T S YNA++ G
Sbjct: 623 TEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKG 682

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFS 155
           ++++K    A  + ++M +  +  D + ++
Sbjct: 683 FYKRKKFLEARELFEQMRREGLVADREIYN 712



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 74/375 (19%), Positives = 153/375 (40%), Gaps = 42/375 (11%)

Query: 100 AYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI- 158
           A+ LL  ++    +P    Y+ ++ GY +  ++Q  L +++EM+   +KP+  T++ +I 
Sbjct: 272 AHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVIL 331

Query: 159 -----HNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPV 213
                   +  E +++   ++ S G      ++  LI+ +   G    A ++  + +   
Sbjct: 332 LLCKTGKVAEAERVLR---EMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRK 388

Query: 214 KSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNR 270
            S   +  +A++  L   GR  +A  ++ E+      LEP  V   ALI+    EG++  
Sbjct: 389 ISPDFITYTAVICGLCQTGRVMEADKLFHEM--VCKRLEPDEVTYTALIDGYCKEGKMKE 446

Query: 271 LI----QLLEEVHDPDY-----WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMA 321
                 Q+L+    P+        DG C+         ++ +A +LL ++  K  +  + 
Sbjct: 447 AFSLHNQMLQMGLTPNIVTYTALADGLCKC-------GEVDTANELLHEMCRKGLELNIY 499

Query: 322 MEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAH 381
                    C+    D   V++  D+     +  G  P       L+ A   +R++ RAH
Sbjct: 500 TYNSLVNGLCKAGNIDQA-VKLMKDM-----EVAGFHPDAVTYTTLMDAYCKSREMVRAH 553

Query: 382 LIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLL------SKMPKDDPHVRFVIQA 435
            + ++  +  L   V+++  +   F  SG  +   KLL        MP    +   + Q 
Sbjct: 554 ELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQY 613

Query: 436 CKQTYTIPSLQKERG 450
           C +     + +  RG
Sbjct: 614 CIRNNMRATTEIYRG 628


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 110/243 (45%), Gaps = 16/243 (6%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL++   M + ++ P    + S+L+A     +    R I+  +    L+   +   S+ +
Sbjct: 206 ALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNT 265

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K     +A  L D +K  NL+    ++NA+++GY +    + A+ +  EM   +V+P
Sbjct: 266 MYAKCGQVATAKILFDKMKSPNLI----LWNAMISGYAKNGYAREAIDMFHEMINKDVRP 321

Query: 150 DSQTFSYLIHNCS---NEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV- 205
           D+ + +  I  C+   + E     YE +  +  +   ++  ALI+ +  CG  E AR V 
Sbjct: 322 DTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVF 381

Query: 206 --VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
              LD ++       V SA++     HGR  +AI +Y  ++  G +      + L+   N
Sbjct: 382 DRTLDRDVV------VWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACN 435

Query: 264 SEG 266
             G
Sbjct: 436 HSG 438



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 86/182 (47%), Gaps = 13/182 (7%)

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           +I  +    D   A  + DDL    + P    +NAI+ GY R    Q AL++   M+ A 
Sbjct: 59  LIHASSSFGDITFARQVFDDLPRPQIFP----WNAIIRGYSRNNHFQDALLMYSNMQLAR 114

Query: 147 VKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203
           V PDS TF +L+  CS    +      + Q+   G     +V   LI  Y  C     AR
Sbjct: 115 VSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSAR 174

Query: 204 QVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
            V     +P+  R+ V  +A+VSA A +G   +A+ ++  +++   +++P  V AL+  L
Sbjct: 175 TVF--EGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKM--DVKPDWV-ALVSVL 229

Query: 263 NS 264
           N+
Sbjct: 230 NA 231


>gi|326489801|dbj|BAK01881.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 788

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 105/237 (44%), Gaps = 3/237 (1%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y KLI        V  A  ++ +M + ++ P   T  +++H   +S       R +  I 
Sbjct: 460 YSKLIDLHSKATHVLDAERILGKMKEKDIAPDILTSITLVHMYSKSGNLEQATRAFDFIE 519

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
              L+P++  F SMIS  +       A  LL  + E+++ P+  +Y  +M  Y  +  V 
Sbjct: 520 KEGLQPDTRLFTSMISACINAGVPKQAEKLLKKMDELSMKPSRELYMDVMRAYAERNLVD 579

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALI 190
           GA M+  +M  A ++P  + F+ LI       N +   + +EQ++  G +        ++
Sbjct: 580 GAQMMRTQMSMAGIEPTLECFTLLIEAYGRAGNPDPAYEAFEQMRKNGHEPDDRCLAGMM 639

Query: 191 NAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
                  + ++A +++L  +  VK   +    L+  L+      +A  + ++I++AG
Sbjct: 640 TGLMKTNQLDQALKLLLSLKEGVKPGVKTNLVLLDWLSMLQLVQEAEQLVQKIRKAG 696



 Score = 39.3 bits (90), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 37/203 (18%), Positives = 91/203 (44%), Gaps = 10/203 (4%)

Query: 80  NSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVL 139
           N   +  +I L+ K      A  +L  +KE ++ P       ++  Y +  +++ A    
Sbjct: 456 NIRDYSKLIDLHSKATHVLDAERILGKMKEKDIAPDILTSITLVHMYSKSGNLEQATRAF 515

Query: 140 KEMEQANVKPDSQTFSYLIHNCSN------EEDIIKYYEQLKSAGGQITKYVFMALINAY 193
             +E+  ++PD++ F+ +I  C N       E ++K  ++L     + ++ ++M ++ AY
Sbjct: 516 DFIEKEGLQPDTRLFTSMISACINAGVPKQAEKLLKKMDELSM---KPSRELYMDVMRAY 572

Query: 194 TTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP 252
                 + A+ +     +  ++   E  + L+ A    G    A   +E++++ G   + 
Sbjct: 573 AERNLVDGAQMMRTQMSMAGIEPTLECFTLLIEAYGRAGNPDPAYEAFEQMRKNGHEPDD 632

Query: 253 RAVIALIEHLNSEGELNRLIQLL 275
           R +  ++  L    +L++ ++LL
Sbjct: 633 RCLAGMMTGLMKTNQLDQALKLL 655


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 137/319 (42%), Gaps = 20/319 (6%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  LI   C +     A+ ++  MVQ    P+  T N+I+    +  + N    I
Sbjct: 177 PNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNI 236

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    + PN  T+ S+I    K  ++    +L++++ +  +MP   ++  ++    +
Sbjct: 237 FSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCK 296

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLI-HNC--SNEEDIIKYYEQLKSAGGQITKYV 185
           +  V  A  V+  M Q  V+PD  T++ L+  +C  S  ++  K ++ +   G       
Sbjct: 297 EGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVIS 356

Query: 186 FMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +  LIN Y      +KA  +  +  +  +       + L+  L   GR  DAI ++ E+ 
Sbjct: 357 YSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMV 416

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYW-----MDGCCRLILHC 295
            +G   +      L+++L     L++ + +L+ +      PD       +DG CR+    
Sbjct: 417 ASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRV---- 472

Query: 296 VRFKQLSSATDLLKQLKDK 314
               +L +A DL   L  K
Sbjct: 473 ---GELEAAGDLFSSLSSK 488



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 91/433 (21%), Positives = 177/433 (40%), Gaps = 28/433 (6%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEF 62
           KL   P +A++  LI   C   K+  AL + ++MV     P+  T  +++H  C+     
Sbjct: 137 KLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSR 196

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
             +R +  M+   N +PN  T+ ++I    K +  + A ++  ++    + P  S YN+I
Sbjct: 197 AAIRLLRSMV-QKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSI 255

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE------EDIIKYYEQLKS 176
           + G  +  + +    ++ EM  + + P+   F+ L+     E       D++    Q   
Sbjct: 256 IHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQ--- 312

Query: 177 AGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEV--KSALVSALASHGRTS 234
            G +     + AL++ +    E ++A + V D  +       V   S L++      R  
Sbjct: 313 RGVEPDVVTYTALMDGHCLRSEMDEADK-VFDTMVRKGCAPNVISYSTLINGYCKIQRID 371

Query: 235 DAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLI 292
            A+ ++EE+ +    L P  V    LI  L   G L   I L  E+       D     I
Sbjct: 372 KAMYLFEEMCQR--ELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRI 429

Query: 293 L--HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQF 350
           L  +  + + L  A  +LK ++      ++       +  C++      +++   DL   
Sbjct: 430 LLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVG-----ELEAAGDLFSS 484

Query: 351 IKDELGLPPSRKCLDFLL-GACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLAS 409
           +  + GL P       ++ G C+    L  A  +++E    G   +  +Y  + + FL +
Sbjct: 485 LSSK-GLHPDVWTYTIMINGLCLQGL-LAEATKLFREMNTDGCSPDDCTYNLITRGFLRN 542

Query: 410 GNRKSASKLLSKM 422
               SA +LL +M
Sbjct: 543 NETLSAIQLLQEM 555



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/290 (20%), Positives = 117/290 (40%), Gaps = 12/290 (4%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +I P+   +  L+   C    V +A DVV+ M+Q  + P   T  +++       E +  
Sbjct: 279 KIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEA 338

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            +++  +      PN  ++ ++I+   KI+  D A  L +++ +  L+P    YN ++ G
Sbjct: 339 DKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHG 398

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQ----- 180
                 ++ A+ +  EM  +   PD  T+  L+        + +    LK+  G      
Sbjct: 399 LCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPD 458

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE---VKSALVSALASHGRTSDAI 237
           I  Y    +I+     GE E A    L + +  K         + +++ L   G  ++A 
Sbjct: 459 IQSYNI--VIDGMCRVGELEAAGD--LFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEAT 514

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDG 287
            ++ E+   GC+ +      +        E    IQLL+E+    +  D 
Sbjct: 515 KLFREMNTDGCSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADA 564



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 95/480 (19%), Positives = 180/480 (37%), Gaps = 55/480 (11%)

Query: 17  LITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHN 76
           +I   C L +V     V+ ++ +    P T T  +++       +      ++  +    
Sbjct: 115 VINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEG 174

Query: 77  LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGAL 136
            +PN  T+ ++I    K+ +  +A  LL  + + N  P    YN I+   F+ + V  AL
Sbjct: 175 FQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEAL 234

Query: 137 MVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKYVFMALINAY 193
            +  EM    + P+  T++ +IH     S  + +     ++  +       +F  L++A 
Sbjct: 235 NIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDAL 294

Query: 194 TTCGEFEKARQVVLDAEIPVKSRSEVK--SALVSALASHGRTSDAIIVYEEIKEAGCNLE 251
              G    A  VV D  I      +V   +AL+          +A  V++ +   GC   
Sbjct: 295 CKEGMVTIAHDVV-DVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPN 353

Query: 252 PRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCR-LILHCVRFKQLSSATDLLKQ 310
             +   LI        +++ + L EE+         C R L+ + V +  L      + +
Sbjct: 354 VISYSTLINGYCKIQRIDKAMYLFEEM---------CQRELVPNIVTYNTLIHGLCHVGR 404

Query: 311 LKDKFKDDEMAMEYHFSEIFCQIATTDPPDV---QIGLD-------------LLQFIKDE 354
           L+D            F E+   +A+   PD+   +I LD             +L+ I+  
Sbjct: 405 LRDAIA--------LFHEM---VASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGS 453

Query: 355 LGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKS 414
             L P  +  + ++       +L+ A  ++    + GL  +V +Y  M       G    
Sbjct: 454 -NLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAE 512

Query: 415 ASKLLSKM------PKDDPHVRFVIQACKQTYTIPSLQ-----KERGFEKDRDTLLLHKE 463
           A+KL  +M      P D  +        +   T+ ++Q       RGF  D  T+ L  E
Sbjct: 513 ATKLFREMNTDGCSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTITLIVE 572



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/156 (19%), Positives = 62/156 (39%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y+ L+ Y C    +  A+ +++ +    L P  ++ N ++       E      +
Sbjct: 422 PDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDL 481

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    L P+  T+  MI+          A  L  ++      P    YN I  G+ R
Sbjct: 482 FSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTYNLITRGFLR 541

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE 164
             +   A+ +L+EM       D+ T + ++   S++
Sbjct: 542 NNETLSAIQLLQEMLGRGFSADASTITLIVEMLSDD 577


>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g09680
 gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
 gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 607

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 113/251 (45%), Gaps = 10/251 (3%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K    P   +Y  LI   C   K+  A  + ++M +  L+P+     +++H    + E +
Sbjct: 303 KSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEID 362

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
           L++  Y  +    L+P+   + ++++   K  D  +A +++D +    L P    Y  ++
Sbjct: 363 LMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLI 422

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKS---AGGQ 180
            G+ R  DV+ AL + KEM+Q  ++ D   FS L+     E  +I     L+    AG +
Sbjct: 423 DGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIK 482

Query: 181 ITKYVFMALINAYTTCGE----FEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDA 236
                +  +++A+   G+    F+  +++  D  +P      V   L++ L   G+  +A
Sbjct: 483 PDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNV---LLNGLCKLGQMKNA 539

Query: 237 IIVYEEIKEAG 247
            ++ + +   G
Sbjct: 540 DMLLDAMLNIG 550



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 107/239 (44%), Gaps = 15/239 (6%)

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           ++++  I   +L+P   +F ++I+   K+ + D  + L   +++    P    Y+A++  
Sbjct: 260 QKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINA 319

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS--NEEDIIK-YYEQLKSAGGQIT 182
             ++  + GA  +  EM +  + P+   F+ LIH  S   E D++K  Y+++ S G Q  
Sbjct: 320 LCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPD 379

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE--VKSALVSALASHGRTSDAIIVY 240
             ++  L+N +   G+   AR +V D  I    R +    + L+      G    A+ + 
Sbjct: 380 IVLYNTLVNGFCKNGDLVAARNIV-DGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIR 438

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGEL----NRLIQLLEEVHDPD-----YWMDGCCR 290
           +E+ + G  L+     AL+  +  EG +      L ++L     PD       MD  C+
Sbjct: 439 KEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCK 497



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/256 (19%), Positives = 110/256 (42%), Gaps = 18/256 (7%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
            K  + P+  S+  LI   C +  +     +  QM +    P   T +++++A  +  + 
Sbjct: 267 TKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKM 326

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           +    ++  +C   L PN   F ++I  + +  + D        +    L P   +YN +
Sbjct: 327 DGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTL 386

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGG 179
           + G+ +  D+  A  ++  M +  ++PD  T++ LI       D+   ++  +++   G 
Sbjct: 387 VNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGI 446

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKS--RSEVK------SALVSALASHG 231
           ++ +  F AL+     CG  ++ R  V+DAE  ++   R+ +K      + ++ A    G
Sbjct: 447 ELDRVGFSALV-----CGMCKEGR--VIDAERALREMLRAGIKPDDVTYTMMMDAFCKKG 499

Query: 232 RTSDAIIVYEEIKEAG 247
                  + +E++  G
Sbjct: 500 DAQTGFKLLKEMQSDG 515



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 75/173 (43%), Gaps = 2/173 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           + P   +Y  LI   C    V  AL++ ++M Q  +       ++++   C+E    +  
Sbjct: 411 LRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAE 470

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           R +  M+    +KP+  T+  M+    K  D  + + LL +++    +P+   YN ++ G
Sbjct: 471 RALREML-RAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNG 529

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAG 178
             +   ++ A M+L  M    V PD  T++ L+       +  K Y Q    G
Sbjct: 530 LCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLEGHHRHANSSKRYIQKPEIG 582


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 108/241 (44%), Gaps = 6/241 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  ++  LI   C   KV +AL   + M+   + P   T N++++   +  +    R
Sbjct: 349 LVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEAR 408

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R+   +    LKP+  TF ++I    K  D +SA  +   + E  +      + A+++G 
Sbjct: 409 RLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGL 468

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITK 183
            R+  V  A  +L +M  A  KPD  T++ +I     + D+    K  ++++S G     
Sbjct: 469 CREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGV 528

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA--EIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
             + AL+N     G+ + A+ ++LDA   + V       + L+   + HG + D  I   
Sbjct: 529 VTYNALMNGLCKQGQMKNAK-MLLDAMLNVGVAPNDITYNILLDGHSKHGSSVDVDIFNS 587

Query: 242 E 242
           E
Sbjct: 588 E 588



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/279 (20%), Positives = 111/279 (39%), Gaps = 4/279 (1%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  + P+  S+  LI+  C    V     +   M    + P   T +++++   +    +
Sbjct: 276 KRGLRPTVVSFNTLISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLD 335

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               ++  +C   L PN  TF ++I    K    D A      +    + P    YNA++
Sbjct: 336 EGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALI 395

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQ 180
            G  +  D++ A  ++ EM  + +KPD  TF+ LI  C  + D+   ++   ++   G +
Sbjct: 396 NGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIE 455

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIV 239
           +    F ALI+     G    A +++ D      K      + ++      G       +
Sbjct: 456 LDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKL 515

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            +E++  G         AL+  L  +G++     LL+ +
Sbjct: 516 LKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAM 554



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 62/290 (21%), Positives = 125/290 (43%), Gaps = 13/290 (4%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           +  L+   C    V  A  V +++ +  L P+  + N+++  C +S +     R+  ++ 
Sbjct: 251 FNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEGFRLKGVME 310

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
              + P+  TF ++I+   K    D    L D++    L+P    +  ++ G  +   V 
Sbjct: 311 SEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVD 370

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALI 190
            AL   + M    V+PD  T++ LI+      D+    +   ++ ++G +  K  F  LI
Sbjct: 371 LALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLI 430

Query: 191 NAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
           +     G+ E A ++     E  ++      +AL+S L   GR  DA  +  ++  AG  
Sbjct: 431 DGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFK 490

Query: 250 LEPRAVIALIEHLNSEGELNRLIQLLEEV----HDP-----DYWMDGCCR 290
            +      +I+    +G++    +LL+E+    H P     +  M+G C+
Sbjct: 491 PDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCK 540



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 72/360 (20%), Positives = 140/360 (38%), Gaps = 43/360 (11%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P     N ++H   ++ +    R ++  I    L+P   +F ++IS   K  D +  + L
Sbjct: 246 PKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEGFRL 305

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163
              ++   + P    ++A++ G  ++  +    ++  EM    + P+  TF+ LI     
Sbjct: 306 KGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCK 365

Query: 164 EEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEV 219
              +   +K ++ + + G +     + ALIN     G+ ++AR++V +     +K     
Sbjct: 366 GGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKIT 425

Query: 220 KSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279
            + L+      G    A+ +   + E G  L+  A  ALI  L  EG           VH
Sbjct: 426 FTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREG----------RVH 475

Query: 280 DPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPP 339
           D    +                   TD+L      FK D+        + FC+       
Sbjct: 476 DAGRML-------------------TDMLSA---GFKPDDPTYTMVI-DCFCKKG----- 507

Query: 340 DVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSY 399
           DV++G  LL+ ++ + G  P     + L+        +K A ++     N G+  N ++Y
Sbjct: 508 DVKMGFKLLKEMQSD-GHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITY 566


>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
          Length = 1315

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/318 (19%), Positives = 131/318 (41%), Gaps = 40/318 (12%)

Query: 3    AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYE 61
             K+ ++P+  +Y  +I+  C    V  A +++E+MV+    P+  T  S++H  C++ + 
Sbjct: 893  TKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWT 952

Query: 62   FNLVRRIYPMICHHNLKPNSETFRSMIS-------------------------------- 89
                R    +I   N KPN  T+ +MIS                                
Sbjct: 953  ERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTT 1012

Query: 90   ---LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
                + K  +F  AY L++ +      P    YN+I+ G  ++   + A  +L    Q  
Sbjct: 1013 LIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQ 1072

Query: 147  VKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203
            ++ D  T++ LI       D+   + +  ++   G Q   +++  LI A+      + + 
Sbjct: 1073 IEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSE 1132

Query: 204  QVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
            ++  +  ++ +    E  ++++       + S A+  ++++ + GC  +  +  ALI  L
Sbjct: 1133 KLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGL 1192

Query: 263  NSEGELNRLIQLLEEVHD 280
              E  L+   QL + + D
Sbjct: 1193 CKESRLDEARQLYDTMID 1210



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 105/240 (43%), Gaps = 13/240 (5%)

Query: 7    ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
            + P S +YK +I   C    V  A   + +M++   V    T+  I+ A CE+S    LV
Sbjct: 827  VYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKS----LV 882

Query: 66   RR---IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
             R    +  +    L PN   + SMIS   K      A+ LL+++ +    P    + ++
Sbjct: 883  NRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSL 942

Query: 123  MAGYFRKKDVQGAL-MVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAG 178
            + G  +K   + A  + LK +   N KP+  T++ +I     EE + +    +E++K  G
Sbjct: 943  IHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQG 1002

Query: 179  GQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAI 237
                   +  LI+ +   G F KA +++ L +       +   +++V  L   GR  +A 
Sbjct: 1003 LVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAF 1062



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/245 (20%), Positives = 110/245 (44%), Gaps = 8/245 (3%)

Query: 9    PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
            P+  +Y  +I+  C   K+  A  + E+M +  LVP+T T  +++    ++  F+    +
Sbjct: 970  PNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYEL 1029

Query: 69   YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              ++ +    PN+ T+ S++    K    + A+ LL+   +  +      Y  +++   +
Sbjct: 1030 MELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCK 1089

Query: 129  KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYV 185
            + D+  AL+ L +M +   +PD   ++ LI     +   +D  K ++++   G   TK  
Sbjct: 1090 RADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKET 1149

Query: 186  FMALINAYTTCGEFEKARQVVLDAEIP---VKSRSEVKSALVSALASHGRTSDAIIVYEE 242
            + ++I  Y  C E + +  V    ++        S    AL+S L    R  +A  +Y+ 
Sbjct: 1150 YTSMICGY--CREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYDT 1207

Query: 243  IKEAG 247
            + + G
Sbjct: 1208 MIDKG 1212



 Score = 38.9 bits (89), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 74/373 (19%), Positives = 136/373 (36%), Gaps = 52/373 (13%)

Query: 76   NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
            NL+   E    M+ +  +I     A  ++ D++   L+ T  + N I+      + V+ A
Sbjct: 756  NLERAHEVVECMVGVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYA 815

Query: 136  LMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINA 192
              V  EM    V PDS T+ Y+I       +++   ++  ++   G  +       +I A
Sbjct: 816  GNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITA 875

Query: 193  YTTCGEFEKARQVVLDAEIPVKSRSE---VKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
            +  C +    R V    ++     S      S+++S L   G    A  + EE+ + G  
Sbjct: 876  F--CEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWK 933

Query: 250  LEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLK 309
                   +LI  L  +G                 W +   RL L  +R            
Sbjct: 934  PNVYTHTSLIHGLCKKG-----------------WTERAFRLFLKLIR------------ 964

Query: 310  QLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLG 369
               D +K +        S  +C+       ++     L + +K++ GL P+      L+ 
Sbjct: 965  --SDNYKPNVHTYTAMISG-YCKEEKLSRAEM-----LFERMKEQ-GLVPNTNTYTTLID 1015

Query: 370  ACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHV 429
                A +  +A+ + +   N G   N  +Y  +       G  + A KLL+   ++    
Sbjct: 1016 GHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQ--- 1072

Query: 430  RFVIQACKQTYTI 442
               I+A   TYTI
Sbjct: 1073 ---IEADGVTYTI 1082


>gi|255572205|ref|XP_002527042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533604|gb|EEF35342.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 520

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 114/234 (48%), Gaps = 18/234 (7%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P+  T++SIL AC  +      R I+     + ++ +      +I L  K     SA ++
Sbjct: 230 PTVTTLSSILLACSRAAHLQHGRFIHGYAVRNRVQLDIFVSSGLIELYFKCGKVQSAENI 289

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163
              L + N++    ++N +++GY    D   AL +  EM+ A+VKPD+ TFS ++  CS 
Sbjct: 290 FYMLPKANVV----LWNVMISGYVTIGDYVKALDMYDEMKIASVKPDAVTFSSILSACSQ 345

Query: 164 EEDIIKYYEQLKSAGGQITK-------YVFMALINAYTTCGEFEKARQVVLDAEIPVKSR 216
               +   E+ K     ITK        V  AL++ Y  CG  ++A  V    ++P +  
Sbjct: 346 ----LAALEKGKEIHNCITKNDLETNEIVMGALLDMYAKCGAVDEALSVF--NKLPERDL 399

Query: 217 SEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNR 270
               S ++SA  SHG+  +A+ ++EE++++  + +    +A++   +  G +++
Sbjct: 400 LSWTS-IISAYGSHGQALEALRLFEELQQSKASPDAVTFLAVLSACSHAGLVDK 452



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 13/193 (6%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           ALD+ ++M    + P   T +SIL AC +       + I+  I  ++L+ N     +++ 
Sbjct: 317 ALDMYDEMKIASVKPDAVTFSSILSACSQLAALEKGKEIHNCITKNDLETNEIVMGALLD 376

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K    D A S+ + L E +L+     + +I++ Y        AL + +E++Q+   P
Sbjct: 377 MYAKCGAVDEALSVFNKLPERDLLS----WTSIISAYGSHGQALEALRLFEELQQSKASP 432

Query: 150 DSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTT----CGEFEKARQV 205
           D+ TF  ++  CS+   + K Y         IT Y     +  Y+      G  ++  Q 
Sbjct: 433 DAVTFLAVLSACSHAGLVDKGYYYFNQ---MITNYGIKPGLEHYSCLIDLLGRIQEQSQE 489

Query: 206 VLDAEIPVKSRSE 218
           +   EIP  +R+E
Sbjct: 490 L--NEIPCPNRAE 500



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 106/222 (47%), Gaps = 11/222 (4%)

Query: 30  ALDVVEQMVQGE-LVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
           AL++ ++++Q   L P + T  S+L AC     ++  R I+  +       +     S++
Sbjct: 13  ALELFDRLLQYPYLQPDSFTYPSVLKACGGLGRYDYGRMIHTHLIKSGFVFDIVVASSLV 72

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
           SL+ K   F  A  L D++ E ++    + +N +++ Y++    + AL +  +M  +  +
Sbjct: 73  SLHAKCNLFGYAIQLFDEMPERDV----ACWNTVISCYYQDGKAEKALEMFGKMRDSGFE 128

Query: 149 PDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           P+S T + +I +C+   D+ +  E   ++   G  +  +V  AL++ Y   G  + A+ +
Sbjct: 129 PNSVTLTTVISSCARLLDLERGKEIHREVMQNGMVLDGFVGSALVDMYGKFGCLDLAKDI 188

Query: 206 VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
               ++P K+     S L++  +S   + + I ++  +   G
Sbjct: 189 F--EQMPKKTLVAWNS-LIAGYSSAADSKECIELFWRMNMEG 227



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 46/235 (19%), Positives = 101/235 (42%), Gaps = 16/235 (6%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           K   AL++  +M      P++ T+ +++ +C    +    + I+  +  + +  +     
Sbjct: 111 KAEKALEMFGKMRDSGFEPNSVTLTTVISSCARLLDLERGKEIHREVMQNGMVLDGFVGS 170

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           +++ +  K    D A  + + + +  L+     +N+++AGY    D +  + +   M   
Sbjct: 171 ALVDMYGKFGCLDLAKDIFEQMPKKTLVA----WNSLIAGYSSAADSKECIELFWRMNME 226

Query: 146 NVKPDSQTFSYLIHNCSNEEDI-----IKYYEQLKSAGGQITKYVFMALINAYTTCGEFE 200
             KP   T S ++  CS    +     I  Y        Q+  +V   LI  Y  CG+ +
Sbjct: 227 GTKPTVTTLSSILLACSRAAHLQHGRFIHGYAVRNRV--QLDIFVSSGLIELYFKCGKVQ 284

Query: 201 KARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255
            A  +     +P K+   + + ++S   + G    A+ +Y+E+K A  +++P AV
Sbjct: 285 SAENIFY--MLP-KANVVLWNVMISGYVTIGDYVKALDMYDEMKIA--SVKPDAV 334


>gi|221503954|gb|EEE29631.1| PPR repeat-containing protein, putative [Toxoplasma gondii VEG]
          Length = 1945

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/261 (20%), Positives = 127/261 (48%), Gaps = 10/261 (3%)

Query: 7    ITPSSASYKKLITYSCDLLKVHVALDVVEQMV-QGELVPSTETINSILHACEESYEFNLV 65
            + P++ +Y  +        +V  AL++ E+M  +G++ P+T   ++I+    +S + +  
Sbjct: 1050 LQPNAVAYGCMYDALVSNGRVVEALELFEEMKREGQVPPNTIMYSTIIKGFAQSKQLDRA 1109

Query: 66   RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             ++Y  +  + +  N+ TF S++    ++   D A  LL+D+    + P    ++ I+ G
Sbjct: 1110 LKMYAEMQQNGVAINTVTFNSIVDACARVGAMDKAAMLLEDMLSQGIKPDLITFSTIIKG 1169

Query: 126  YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC--SNEEDIIKY-YEQLKSAGGQIT 182
            Y    ++  AL +LK M + ++KPD   ++ L+  C  +    + +Y +E+++      +
Sbjct: 1170 YCVHGEMNKALHLLKAMRERHIKPDGVLYNSLLDGCVKTGRVSLCEYLWEEMQREEIPPS 1229

Query: 183  KYVFMALINAYTTCGEFEKARQVVLDAEIPVKS----RSEVKSALVSALASHGRTSDAII 238
             +    LI  +    + +KA  +V   E+P K      + V + L++A   +     A+ 
Sbjct: 1230 NFTLTILIKMHGRLYQLQKAFDLV--KELPRKYGFSINAHVYTCLMAACIVNREYYLALE 1287

Query: 239  VYEEIKEAGCNLEPRAVIALI 259
            VY+ ++ +G   +P+ +  ++
Sbjct: 1288 VYDCMERSGVRGDPKTLTTIV 1308



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 93/211 (44%), Gaps = 8/211 (3%)

Query: 1    MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
            M  + ++ P++  Y  +I       ++  AL +  +M Q  +  +T T NSI+ AC    
Sbjct: 1080 MKREGQVPPNTIMYSTIIKGFAQSKQLDRALKMYAEMQQNGVAINTVTFNSIVDACARVG 1139

Query: 61   EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
              +    +   +    +KP+  TF ++I       + + A  LL  ++E ++ P   +YN
Sbjct: 1140 AMDKAAMLLEDMLSQGIKPDLITFSTIIKGYCVHGEMNKALHLLKAMRERHIKPDGVLYN 1199

Query: 121  AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI------HNCSNEEDIIKYYEQL 174
            +++ G  +   V     + +EM++  + P + T + LI      +      D++K  E  
Sbjct: 1200 SLLDGCVKTGRVSLCEYLWEEMQREEIPPSNFTLTILIKMHGRLYQLQKAFDLVK--ELP 1257

Query: 175  KSAGGQITKYVFMALINAYTTCGEFEKARQV 205
            +  G  I  +V+  L+ A     E+  A +V
Sbjct: 1258 RKYGFSINAHVYTCLMAACIVNREYYLALEV 1288



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 67/309 (21%), Positives = 123/309 (39%), Gaps = 43/309 (13%)

Query: 77   LKPNSETFRSMISLNVKIKDFDSAYSLLDDLK-EMNLMPTASMYNAIMAGYFRKKDVQGA 135
            L+PN+  +  M    V       A  L +++K E  + P   MY+ I+ G+ + K +  A
Sbjct: 1050 LQPNAVAYGCMYDALVSNGRVVEALELFEEMKREGQVPPNTIMYSTIIKGFAQSKQLDRA 1109

Query: 136  LMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINA 192
            L +  EM+Q  V  ++ TF+ ++  C+    + K     E + S G +     F  +I  
Sbjct: 1110 LKMYAEMQQNGVAINTVTFNSIVDACARVGAMDKAAMLLEDMLSQGIKPDLITFSTIIKG 1169

Query: 193  YTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLE 251
            Y   GE  KA  ++    E  +K    + ++L+      GR S    ++EE++     + 
Sbjct: 1170 YCVHGEMNKALHLLKAMRERHIKPDGVLYNSLLDGCVKTGRVSLCEYLWEEMQRE--EIP 1227

Query: 252  PRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQL 311
            P                N  + +L ++H                 R  QL  A DL+K+L
Sbjct: 1228 PS---------------NFTLTILIKMHG----------------RLYQLQKAFDLVKEL 1256

Query: 312  KDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGAC 371
              K+     A  Y      C +      +  + L++   ++   G+    K L  ++G C
Sbjct: 1257 PRKYGFSINAHVYTCLMAACIVNR----EYYLALEVYDCMERS-GVRGDPKTLTTIVGGC 1311

Query: 372  VNARDLKRA 380
            +  R ++ A
Sbjct: 1312 IKGRMIREA 1320



 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 74/156 (47%), Gaps = 1/156 (0%)

Query: 7    ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
            I P   ++  +I   C   +++ AL +++ M +  + P     NS+L  C ++   +L  
Sbjct: 1156 IKPDLITFSTIIKGYCVHGEMNKALHLLKAMRERHIKPDGVLYNSLLDGCVKTGRVSLCE 1215

Query: 67   RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL-KEMNLMPTASMYNAIMAG 125
             ++  +    + P++ T   +I ++ ++     A+ L+ +L ++      A +Y  +MA 
Sbjct: 1216 YLWEEMQREEIPPSNFTLTILIKMHGRLYQLQKAFDLVKELPRKYGFSINAHVYTCLMAA 1275

Query: 126  YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC 161
                ++   AL V   ME++ V+ D +T + ++  C
Sbjct: 1276 CIVNREYYLALEVYDCMERSGVRGDPKTLTTIVGGC 1311


>gi|221483021|gb|EEE21345.1| PPR repeat-containing protein, putative [Toxoplasma gondii GT1]
          Length = 1945

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/261 (20%), Positives = 127/261 (48%), Gaps = 10/261 (3%)

Query: 7    ITPSSASYKKLITYSCDLLKVHVALDVVEQMV-QGELVPSTETINSILHACEESYEFNLV 65
            + P++ +Y  +        +V  AL++ E+M  +G++ P+T   ++I+    +S + +  
Sbjct: 1050 LQPNAVAYGCMYDALVSNGRVVEALELFEEMKREGQVPPNTIMYSTIIKGFAQSKQLDRA 1109

Query: 66   RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             ++Y  +  + +  N+ TF S++    ++   D A  LL+D+    + P    ++ I+ G
Sbjct: 1110 LKMYAEMQQNGVAINTVTFNSIVDACARVGAMDKAAMLLEDMLSQGIKPDLITFSTIIKG 1169

Query: 126  YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC--SNEEDIIKY-YEQLKSAGGQIT 182
            Y    ++  AL +LK M + ++KPD   ++ L+  C  +    + +Y +E+++      +
Sbjct: 1170 YCVHGEMNKALHLLKAMRERHIKPDGVLYNSLLDGCVKTGRVSLCEYLWEEMQREEIPPS 1229

Query: 183  KYVFMALINAYTTCGEFEKARQVVLDAEIPVKS----RSEVKSALVSALASHGRTSDAII 238
             +    LI  +    + +KA  +V   E+P K      + V + L++A   +     A+ 
Sbjct: 1230 NFTLTILIKMHGRLYQLQKAFDLV--KELPRKYGFSINAHVYTCLMAACIVNREYYLALE 1287

Query: 239  VYEEIKEAGCNLEPRAVIALI 259
            VY+ ++ +G   +P+ +  ++
Sbjct: 1288 VYDCMERSGVRGDPKTLTTIV 1308



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 93/211 (44%), Gaps = 8/211 (3%)

Query: 1    MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
            M  + ++ P++  Y  +I       ++  AL +  +M Q  +  +T T NSI+ AC    
Sbjct: 1080 MKREGQVPPNTIMYSTIIKGFAQSKQLDRALKMYAEMQQNGVAINTVTFNSIVDACARVG 1139

Query: 61   EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
              +    +   +    +KP+  TF ++I       + + A  LL  ++E ++ P   +YN
Sbjct: 1140 AMDKAAMLLEDMLSQGIKPDLITFSTIIKGYCVHGEMNKALHLLKAMRERHIKPDGVLYN 1199

Query: 121  AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI------HNCSNEEDIIKYYEQL 174
            +++ G  +   V     + +EM++  + P + T + LI      +      D++K  E  
Sbjct: 1200 SLLDGCVKTGRVSLCEYLWEEMQREEIPPSNFTLTILIKMHGRLYQLQKAFDLVK--ELP 1257

Query: 175  KSAGGQITKYVFMALINAYTTCGEFEKARQV 205
            +  G  I  +V+  L+ A     E+  A +V
Sbjct: 1258 RKYGFSINAHVYTCLMAACIVNREYYLALEV 1288



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 67/309 (21%), Positives = 123/309 (39%), Gaps = 43/309 (13%)

Query: 77   LKPNSETFRSMISLNVKIKDFDSAYSLLDDLK-EMNLMPTASMYNAIMAGYFRKKDVQGA 135
            L+PN+  +  M    V       A  L +++K E  + P   MY+ I+ G+ + K +  A
Sbjct: 1050 LQPNAVAYGCMYDALVSNGRVVEALELFEEMKREGQVPPNTIMYSTIIKGFAQSKQLDRA 1109

Query: 136  LMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINA 192
            L +  EM+Q  V  ++ TF+ ++  C+    + K     E + S G +     F  +I  
Sbjct: 1110 LKMYAEMQQNGVAINTVTFNSIVDACARVGAMDKAAMLLEDMLSQGIKPDLITFSTIIKG 1169

Query: 193  YTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLE 251
            Y   GE  KA  ++    E  +K    + ++L+      GR S    ++EE++     + 
Sbjct: 1170 YCVHGEMNKALHLLKAMRERHIKPDGVLYNSLLDGCVKTGRVSLCEYLWEEMQRE--EIP 1227

Query: 252  PRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQL 311
            P                N  + +L ++H                 R  QL  A DL+K+L
Sbjct: 1228 PS---------------NFTLTILIKMHG----------------RLYQLQKAFDLVKEL 1256

Query: 312  KDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGAC 371
              K+     A  Y      C +      +  + L++   ++   G+    K L  ++G C
Sbjct: 1257 PRKYGFSINAHVYTCLMAACIVNR----EYYLALEVYDCMERS-GVRGDPKTLTTIVGGC 1311

Query: 372  VNARDLKRA 380
            +  R ++ A
Sbjct: 1312 IKGRMIREA 1320



 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 74/156 (47%), Gaps = 1/156 (0%)

Query: 7    ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
            I P   ++  +I   C   +++ AL +++ M +  + P     NS+L  C ++   +L  
Sbjct: 1156 IKPDLITFSTIIKGYCVHGEMNKALHLLKAMRERHIKPDGVLYNSLLDGCVKTGRVSLCE 1215

Query: 67   RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL-KEMNLMPTASMYNAIMAG 125
             ++  +    + P++ T   +I ++ ++     A+ L+ +L ++      A +Y  +MA 
Sbjct: 1216 YLWEEMQREEIPPSNFTLTILIKMHGRLYQLQKAFDLVKELPRKYGFSINAHVYTCLMAA 1275

Query: 126  YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC 161
                ++   AL V   ME++ V+ D +T + ++  C
Sbjct: 1276 CIVNREYYLALEVYDCMERSGVRGDPKTLTTIVGGC 1311


>gi|237840063|ref|XP_002369329.1| PPR repeat-containing protein [Toxoplasma gondii ME49]
 gi|211966993|gb|EEB02189.1| PPR repeat-containing protein [Toxoplasma gondii ME49]
          Length = 1945

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/261 (20%), Positives = 127/261 (48%), Gaps = 10/261 (3%)

Query: 7    ITPSSASYKKLITYSCDLLKVHVALDVVEQMV-QGELVPSTETINSILHACEESYEFNLV 65
            + P++ +Y  +        +V  AL++ E+M  +G++ P+T   ++I+    +S + +  
Sbjct: 1050 LQPNAVAYGCMYDALVSNGRVVEALELFEEMKREGQVPPNTIMYSTIIKGFAQSKQLDRA 1109

Query: 66   RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             ++Y  +  + +  N+ TF S++    ++   D A  LL+D+    + P    ++ I+ G
Sbjct: 1110 LKMYAEMQQNGVAINTVTFNSIVDACARVGAMDKAAMLLEDMLSQGIKPDLITFSTIIKG 1169

Query: 126  YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC--SNEEDIIKY-YEQLKSAGGQIT 182
            Y    ++  AL +LK M + ++KPD   ++ L+  C  +    + +Y +E+++      +
Sbjct: 1170 YCVHGEMNKALHLLKAMRERHIKPDGVLYNSLLDGCVKTGRVSLCEYLWEEMQREEIPPS 1229

Query: 183  KYVFMALINAYTTCGEFEKARQVVLDAEIPVKS----RSEVKSALVSALASHGRTSDAII 238
             +    LI  +    + +KA  +V   E+P K      + V + L++A   +     A+ 
Sbjct: 1230 NFTLTILIKMHGRLYQLQKAFDLV--KELPRKYGFSINAHVYTCLMAACIVNREYYLALE 1287

Query: 239  VYEEIKEAGCNLEPRAVIALI 259
            VY+ ++ +G   +P+ +  ++
Sbjct: 1288 VYDCMERSGVRGDPKTLTTIV 1308



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 93/211 (44%), Gaps = 8/211 (3%)

Query: 1    MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
            M  + ++ P++  Y  +I       ++  AL +  +M Q  +  +T T NSI+ AC    
Sbjct: 1080 MKREGQVPPNTIMYSTIIKGFAQSKQLDRALKMYAEMQQNGVAINTVTFNSIVDACARVG 1139

Query: 61   EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
              +    +   +    +KP+  TF ++I       + + A  LL  ++E ++ P   +YN
Sbjct: 1140 AMDKAAMLLEDMLSQGIKPDLITFSTIIKGYCVHGEMNKALHLLKAMRERHIKPDGVLYN 1199

Query: 121  AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI------HNCSNEEDIIKYYEQL 174
            +++ G  +   V     + +EM++  + P + T + LI      +      D++K  E  
Sbjct: 1200 SLLDGCVKTGRVSLCEYLWEEMQREEIPPSNFTLTILIKMHGRLYQLQKAFDLVK--ELP 1257

Query: 175  KSAGGQITKYVFMALINAYTTCGEFEKARQV 205
            +  G  I  +V+  L+ A     E+  A +V
Sbjct: 1258 RKYGFSINAHVYTCLMAACIVNREYYLALEV 1288



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 67/309 (21%), Positives = 123/309 (39%), Gaps = 43/309 (13%)

Query: 77   LKPNSETFRSMISLNVKIKDFDSAYSLLDDLK-EMNLMPTASMYNAIMAGYFRKKDVQGA 135
            L+PN+  +  M    V       A  L +++K E  + P   MY+ I+ G+ + K +  A
Sbjct: 1050 LQPNAVAYGCMYDALVSNGRVVEALELFEEMKREGQVPPNTIMYSTIIKGFAQSKQLDRA 1109

Query: 136  LMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINA 192
            L +  EM+Q  V  ++ TF+ ++  C+    + K     E + S G +     F  +I  
Sbjct: 1110 LKMYAEMQQNGVAINTVTFNSIVDACARVGAMDKAAMLLEDMLSQGIKPDLITFSTIIKG 1169

Query: 193  YTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLE 251
            Y   GE  KA  ++    E  +K    + ++L+      GR S    ++EE++     + 
Sbjct: 1170 YCVHGEMNKALHLLKAMRERHIKPDGVLYNSLLDGCVKTGRVSLCEYLWEEMQRE--EIP 1227

Query: 252  PRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQL 311
            P                N  + +L ++H                 R  QL  A DL+K+L
Sbjct: 1228 PS---------------NFTLTILIKMHG----------------RLYQLQKAFDLVKEL 1256

Query: 312  KDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGAC 371
              K+     A  Y      C +      +  + L++   ++   G+    K L  ++G C
Sbjct: 1257 PRKYGFSINAHVYTCLMAACIVNR----EYYLALEVYDCMERS-GVRGDPKTLTTIVGGC 1311

Query: 372  VNARDLKRA 380
            +  R ++ A
Sbjct: 1312 IKGRMIREA 1320



 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 74/156 (47%), Gaps = 1/156 (0%)

Query: 7    ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
            I P   ++  +I   C   +++ AL +++ M +  + P     NS+L  C ++   +L  
Sbjct: 1156 IKPDLITFSTIIKGYCVHGEMNKALHLLKAMRERHIKPDGVLYNSLLDGCVKTGRVSLCE 1215

Query: 67   RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL-KEMNLMPTASMYNAIMAG 125
             ++  +    + P++ T   +I ++ ++     A+ L+ +L ++      A +Y  +MA 
Sbjct: 1216 YLWEEMQREEIPPSNFTLTILIKMHGRLYQLQKAFDLVKELPRKYGFSINAHVYTCLMAA 1275

Query: 126  YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC 161
                ++   AL V   ME++ V+ D +T + ++  C
Sbjct: 1276 CIVNREYYLALEVYDCMERSGVRGDPKTLTTIVGGC 1311


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/283 (22%), Positives = 132/283 (46%), Gaps = 14/283 (4%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEF 62
           +L +   + ++  ++ + C   K   AL+++ QM +    P+  T N+++   C      
Sbjct: 481 RLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCSRGRVQ 536

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDD-LKEMNLMPTASMYNA 121
             +  +  M     + PN  T+ ++IS   K+   D A  + D+ L +  + P A MYNA
Sbjct: 537 AALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNA 596

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQI 181
           ++ GY  +  +  AL+    M +  V     T++ L+H    +    + YE ++  GG+ 
Sbjct: 597 LIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKG 656

Query: 182 TK---YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAI 237
                + +  LIN +   G  +KA ++  + +   V++     +AL+ AL+  G+  +  
Sbjct: 657 LAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETD 716

Query: 238 IVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEV 278
            +++E    G  + P  V+  ALI   ++ G ++R  +++ E+
Sbjct: 717 KLFDEAVRRG--IRPDLVLYNALINSHSTSGNIDRAFEIMGEM 757



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 126/308 (40%), Gaps = 43/308 (13%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHAC---- 56
           M  K E+ P +  Y  LI   CD  K+  AL   ++MV+  +  +  T N ++HA     
Sbjct: 581 MLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDG 640

Query: 57  --EESYEF-------NLVRRIYP---MICHH----NLKPNSETFRSMISLNV-------- 92
              E+YE         L   ++    +I  H    N+K   E F +M    V        
Sbjct: 641 RGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYT 700

Query: 93  -------KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
                  K         L D+     + P   +YNA++  +    ++  A  ++ EME+ 
Sbjct: 701 ALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKK 760

Query: 146 NVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
            + PD  T++ L+         ++  K  +++   G Q     +  LI+ Y+  G+ + A
Sbjct: 761 RIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDA 820

Query: 203 RQVVLDAEIPVKSRSE---VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALI 259
            ++    E+  K  +      +AL+  L  +G+  DA  + +E+ E G   +    I+LI
Sbjct: 821 LRI--RNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLI 878

Query: 260 EHLNSEGE 267
           E L +E E
Sbjct: 879 EGLTTEDE 886



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/171 (21%), Positives = 73/171 (42%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P    Y  LI        +  A +++ +M +  + P   T N+++         +  R
Sbjct: 727 IRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEAR 786

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           ++   +    ++P+  T+ ++IS      D   A  + +++      PT   YNA++ G 
Sbjct: 787 KLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGL 846

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA 177
            +      A  ++KEM +  + PD  T+  LI   + E++     E+L +A
Sbjct: 847 CKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTEDERAIDDERLAAA 897


>gi|47848296|dbj|BAD22160.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 454

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 112/241 (46%), Gaps = 9/241 (3%)

Query: 45  STETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLL 104
           +TET+N +L    +  +  + R ++ ++  H + P++ TF   +     I+  D A   +
Sbjct: 138 NTETMNVLLDVLCKERKIEVAREVFAVLSPH-IPPDAYTFNIFVHGWCSIRRIDEAMWTI 196

Query: 105 DDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---C 161
           +++K     P+   Y  ++  Y ++++ +    VL  M      P+  T++ ++ +   C
Sbjct: 197 EEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIMTSLAKC 256

Query: 162 SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE--- 218
              E+ +    ++KS+G +     + +LIN     G   +A Q V   E+P+   S    
Sbjct: 257 ERFEEALSVSHRMKSSGCKPDTLFYNSLINLLGKSGHLFEASQ-VFRVEMPMNGVSHNLA 315

Query: 219 VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE-HLNSEGELNRLIQLLEE 277
             + ++S    +GR  DA+ V +E++   C  + ++   L+   L+  G+ + +  LL E
Sbjct: 316 TYNTMISIFCYYGRDDDALNVLKEMEAQSCKPDIQSYRPLLRLFLSRRGQADTVRHLLSE 375

Query: 278 V 278
           +
Sbjct: 376 L 376



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 73/190 (38%), Gaps = 40/190 (21%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P + ++   +   C + ++  A+  +E+M +    PS  T  ++L A  +   F  V 
Sbjct: 169 IPPDAYTFNIFVHGWCSIRRIDEAMWTIEEMKRRGFPPSVITYTTVLEAYCKQRNFRRVY 228

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI---- 122
            +   +      PN  T+  +++   K + F+ A S+   +K     P    YN++    
Sbjct: 229 EVLDSMGSQGCHPNVITYTMIMTSLAKCERFEEALSVSHRMKSSGCKPDTLFYNSLINLL 288

Query: 123 ------------------MAG----------------YFRKKDVQGALMVLKEMEQANVK 148
                             M G                Y+ + D   AL VLKEME  + K
Sbjct: 289 GKSGHLFEASQVFRVEMPMNGVSHNLATYNTMISIFCYYGRDD--DALNVLKEMEAQSCK 346

Query: 149 PDSQTFSYLI 158
           PD Q++  L+
Sbjct: 347 PDIQSYRPLL 356


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 130/302 (43%), Gaps = 17/302 (5%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L I  S  ++  +I   C   K+  A D V  M    + P+  T N+I+H    S    
Sbjct: 214 RLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVE 273

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               I   +    ++P+S T+ S+IS   K    + A  + +++ +  L P+A +YN ++
Sbjct: 274 AADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLI 333

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQ 180
            G+  K ++  A     EM +  + P   T++ LIH    E+   +     ++++  G  
Sbjct: 334 DGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGIS 393

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEI---PVKSRSEVKSALVSALASHGRTSDAI 237
                +  LIN Y  C   +KA   +L  E+    +K   +  ++L+  L+   R  +A 
Sbjct: 394 PDAITYNILINGYCRCANAKKA--FLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEAD 451

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPD-----YWMDGC 288
            ++++I   G   +     ALI+   S   +    +LL+++      PD       M G 
Sbjct: 452 DLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGH 511

Query: 289 CR 290
           CR
Sbjct: 512 CR 513



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 135/322 (41%), Gaps = 59/322 (18%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +I P S +Y  LI+  C   ++  A  + E+MVQ  L PS    N+++         ++ 
Sbjct: 286 KIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMA 345

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
                 +    + P   T+ S+I      +  D A  ++ +++E  + P A  YN ++ G
Sbjct: 346 SAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILING 405

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH-------------------------- 159
           Y R  + + A ++  EM  + +KP  +T++ L+H                          
Sbjct: 406 YCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPD 465

Query: 160 ----------NCSNEE-----DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204
                     +CSN       +++K  +++K    ++T   F  ++  +   G+ E+AR+
Sbjct: 466 VIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVT---FNTIMQGHCREGKVEEARE 522

Query: 205 VVLDAEIPVKSRSEVK------SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
           +  + +     R  +K      + L+S  +  G   DA  V  E+ + G N       AL
Sbjct: 523 LFDEMK-----RRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNAL 577

Query: 259 IEHL--NSEGELNRLIQLLEEV 278
           ++ L  N EG+L    +LL+E+
Sbjct: 578 VQGLCKNQEGDLAE--ELLKEM 597



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 111/252 (44%), Gaps = 10/252 (3%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           SS  +  LI   CD+ +   A +    M +  ++P+ ET NS+L    +         +Y
Sbjct: 150 SSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLY 209

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
             +    +K +  TF  MI++  K      A   +  ++   + P    YN I+ GY   
Sbjct: 210 AEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSS 269

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVF 186
             V+ A  +L  M++  ++PDS T+  LI     +   E+  K +E++   G + +  ++
Sbjct: 270 GRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIY 329

Query: 187 MALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS---ALVSALASHGRTSDAIIVYEEI 243
             LI+ +   G  + A       E+  K  S   S   +L+ AL    RT +A  + +EI
Sbjct: 330 NTLIDGFCNKGNLDMAS--AYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEI 387

Query: 244 KEAGCNLEPRAV 255
           +E G  + P A+
Sbjct: 388 QEKG--ISPDAI 397



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 72/153 (47%), Gaps = 2/153 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           + P    +  LI   C    V  A ++++ M + ++ P   T N+I+   C E  +    
Sbjct: 462 VLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREG-KVEEA 520

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           R ++  +    +KP+  +F ++IS   +  D   A+ + +++ +    PT   YNA++ G
Sbjct: 521 RELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQG 580

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
             + ++   A  +LKEM    + PD  T+  LI
Sbjct: 581 LCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLI 613


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/258 (19%), Positives = 118/258 (45%), Gaps = 10/258 (3%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  ++   C   KVH A +++E+M +  + P+  T  +I+    +    +    ++   
Sbjct: 600 AYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEA 659

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               ++ N   + S+I    K+   D AY +L+++ +  L P    +N+++    + +++
Sbjct: 660 KSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEI 719

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMAL 189
             AL+  + M++    P++ T+S LI+     +   K   +++ ++  G       +  +
Sbjct: 720 NEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTM 779

Query: 190 INAYTTCGEFEKARQVV----LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
           I+     G    A  +      +  IP  +     +AL+  +++  R  +A  V+EE + 
Sbjct: 780 ISGLAKVGNITDAYSLFERFKANGGIPDAASF---NALIEGMSNANRAMEAYQVFEETRL 836

Query: 246 AGCNLEPRAVIALIEHLN 263
            GC +  ++ I+L++ LN
Sbjct: 837 RGCRINIKSCISLLDALN 854



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 86/461 (18%), Positives = 170/461 (36%), Gaps = 84/461 (18%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K +  P+S++Y  +I   C   +V  A  ++++M    L P+  T+N ++    ++ +  
Sbjct: 381 KKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLE 440

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              +I+         P+  T+ S+I    K    D AY L + + +        +Y +++
Sbjct: 441 EAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLI 500

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK 183
             +F     +    + KE+ +   KPD                                 
Sbjct: 501 RNFFIHGRKEDGHKIFKELIRRGCKPD--------------------------------- 527

Query: 184 YVFMALINAYTTC----GEFEKARQVVLDAE----IP-VKSRSEVKSALVSALASHGRTS 234
              + L+N Y  C    GE EK R +  D      +P V+S     S L+  L   G+  
Sbjct: 528 ---LTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRS----YSILIHGLTKAGQAR 580

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYWMDGCCR 290
           +   ++  +K+ G  L+ RA  A+++     G++++  ++LEE+ +    P     G   
Sbjct: 581 ETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGA-- 638

Query: 291 LILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTD------------- 337
           ++    +  +L  A  L ++ K K  +  + +     + F ++   D             
Sbjct: 639 IVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKG 698

Query: 338 -PPDVQIGLDLLQFI---------------KDELGLPPSRKCLDFLLGACVNARDLKRAH 381
             P+V     LL  +                 E+  PP+      L+      +   +A 
Sbjct: 699 LTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAF 758

Query: 382 LIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           + W++ +  GL  NV++Y  M       GN   A  L  + 
Sbjct: 759 VFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERF 799



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 96/200 (48%), Gaps = 13/200 (6%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y  LI     + ++  A  ++E+M++  L P+  T NS+L A  ++ E N       ++C
Sbjct: 671 YSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEIN-----EALVC 725

Query: 74  HHNLK-----PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
             ++K     PN+ T+  +I+   +++ ++ A+    D+++  L+P    Y  +++G  +
Sbjct: 726 FQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAK 785

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY---EQLKSAGGQITKYV 185
             ++  A  + +  +     PD+ +F+ LI   SN    ++ Y   E+ +  G +I    
Sbjct: 786 VGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQVFEETRLRGCRINIKS 845

Query: 186 FMALINAYTTCGEFEKARQV 205
            ++L++A       E+A  V
Sbjct: 846 CISLLDALNKSECLEQAAIV 865



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 47/262 (17%), Positives = 111/262 (42%), Gaps = 5/262 (1%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           +V  AL +V+++    L P     N  +    ++   ++  + +  +    LKP+  ++ 
Sbjct: 229 QVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYT 288

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           SMI +  K      A  L   ++    +P A  YN ++ GY      + A  +L+ + + 
Sbjct: 289 SMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRER 348

Query: 146 NVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
              P   +F+ ++     +  +   +  +E +K    +     +  +I+     G  E+A
Sbjct: 349 GCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK-DAEPNSSTYNIIIDMLCLGGRVEEA 407

Query: 203 RQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEH 261
            +++ + E   +       + +V  L    +  +A  ++E   + GCN +     +LI+ 
Sbjct: 408 YRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDG 467

Query: 262 LNSEGELNRLIQLLEEVHDPDY 283
           L  +G+++   +L E++ D  +
Sbjct: 468 LGKKGQVDEAYRLFEKMLDAGH 489



 Score = 46.2 bits (108), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 63/138 (45%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  +TP+  ++  L+       +++ AL   + M + +  P+T T + +++      ++N
Sbjct: 696 KKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYN 755

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
                +  +    L PN  T+ +MIS   K+ +   AYSL +  K    +P A+ +NA++
Sbjct: 756 KAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALI 815

Query: 124 AGYFRKKDVQGALMVLKE 141
            G         A  V +E
Sbjct: 816 EGMSNANRAMEAYQVFEE 833


>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 92/203 (45%), Gaps = 3/203 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P    Y K I  +  L  +  A++++  M +G + P     N ++    +        
Sbjct: 178 LRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAE 237

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++  +    + PN  T+ ++I    K+   + A+++ + +K  N+ PT   +N+++ G 
Sbjct: 238 KLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGL 297

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
            R + ++ A  VL+EME     PD  T++ L      C N +  I   E+    G QI  
Sbjct: 298 CRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQILD 357

Query: 184 YVFMALINAYTTCGEFEKARQVV 206
           Y    L+NA    G  EKA +V+
Sbjct: 358 YTCSILLNALCKEGNMEKAEEVL 380



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/320 (20%), Positives = 140/320 (43%), Gaps = 23/320 (7%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  L+   C++  +  A   +++MV+  ++P+ ET N+++     S  F+   
Sbjct: 423 LRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCF 482

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +I   +    LKPN  ++  +I+   K  +   A  +L D+    ++P A +YN ++ G 
Sbjct: 483 QILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGS 542

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITK 183
                ++ A     EM    + P   T++ LI+    +  +++      ++   G     
Sbjct: 543 CIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFDV 602

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVS---ALASHGRTSDAII-- 238
             + +LI+ Y++ G  +KA ++          +S +K  L +    +A  G+    ++  
Sbjct: 603 ITYNSLISGYSSAGNVQKALELY-----ETMKKSGIKPTLNTYHRLIAGCGKEGLVLVEK 657

Query: 239 VYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVH----DPDYWMDGCCRLI 292
           +Y+E+ +   NL P  VI  ALI      G++ +   L   +      PD     C  LI
Sbjct: 658 IYQEMLQM--NLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNC--LI 713

Query: 293 LHCVRFKQLSSATDLLKQLK 312
           L   +  ++    +L+  +K
Sbjct: 714 LGHFKEGRMHKVKNLVNDMK 733



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 104/249 (41%), Gaps = 11/249 (4%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           EI P+  +Y  LI   C   KV  A ++  ++ +  L     T NS++     +      
Sbjct: 562 EIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKA 621

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +Y  +    +KP   T+  +I+   K +       +  ++ +MNL+P   +YNA++  
Sbjct: 622 LELYETMKKSGIKPTLNTYHRLIAGCGK-EGLVLVEKIYQEMLQMNLVPDRVIYNALIHC 680

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY---YEQLKSAGGQIT 182
           Y    DVQ A  +   ME   ++PD  T++ LI     E  + K       +K  G    
Sbjct: 681 YVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGHFKEGRMHKVKNLVNDMKIRGLIPK 740

Query: 183 KYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAII 238
              +  LI  +    +F+ A    R++  +   P  S   +   L++ L   GR+ DA +
Sbjct: 741 TETYDILIVGHCKLKDFDGAYVWYREMFENGFTPSVS---ICDNLITGLREEGRSHDADV 797

Query: 239 VYEEIKEAG 247
           +  E+   G
Sbjct: 798 ICSEMNMKG 806



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 80/402 (19%), Positives = 157/402 (39%), Gaps = 32/402 (7%)

Query: 37  MVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKD 96
           M +  ++PS  ++N  L +   +  +    +++  I    L+P+   +   I   VK+ D
Sbjct: 138 MKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVESGLRPDQFMYGKAIQAAVKLGD 197

Query: 97  FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSY 156
              A  L+  +K   + P   +YN ++ G  ++K ++ A  +  EM    V P+  T++ 
Sbjct: 198 LKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNT 257

Query: 157 LIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIP- 212
           LI         E+     E++K    + T   F +L+N        E+A++V+ + E+  
Sbjct: 258 LIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYG 317

Query: 213 -VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNR- 270
            V  R    + L       G    +I + EE    G  +       L+  L  EG + + 
Sbjct: 318 FVPDRF-TYTTLFDGHLKCGNVDASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKA 376

Query: 271 ---LIQLLEEVHDP-----DYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAM 322
              L + LE    P     +  ++G C++         ++ A   +++++          
Sbjct: 377 EEVLKKFLENGLAPVGVFFNTIVNGYCQV-------GDINKAYTTIEKMEAVGLRPNHVT 429

Query: 323 EYHFSEIFCQIATTDPPDVQIGLDLLQFIKD--ELGLPPSRKCLDFLLGACVNARDLKRA 380
                + FC++   +  +        + IK   E G+ P+ +  + L+     +    R 
Sbjct: 430 YNSLVKKFCEMKNMEEAE--------KCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRC 481

Query: 381 HLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
             I +E E  GL  NV+SY  +        N   A  +L  M
Sbjct: 482 FQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDM 523



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 71/161 (44%), Gaps = 1/161 (0%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  I P+  +Y +LI   C    + +   + ++M+Q  LVP     N+++H   E  +  
Sbjct: 630 KSGIKPTLNTYHRLIA-GCGKEGLVLVEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQ 688

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               ++  +    ++P+  T+  +I  + K        +L++D+K   L+P    Y+ ++
Sbjct: 689 KACSLHSAMEAQGIQPDKMTYNCLILGHFKEGRMHKVKNLVNDMKIRGLIPKTETYDILI 748

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE 164
            G+ + KD  GA +  +EM +    P       LI     E
Sbjct: 749 VGHCKLKDFDGAYVWYREMFENGFTPSVSICDNLITGLREE 789



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/242 (18%), Positives = 97/242 (40%), Gaps = 38/242 (15%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  LI   C + ++  A ++ E+M    + P+  T NS+L+    +      +
Sbjct: 248 VAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQ 307

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL----------------------- 103
           R+   +  +   P+  T+ ++   ++K  + D++ +L                       
Sbjct: 308 RVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQILDYTCSILLNAL 367

Query: 104 ------------LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151
                       L    E  L P    +N I+ GY +  D+  A   +++ME   ++P+ 
Sbjct: 368 CKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNH 427

Query: 152 QTFSYLIHN-C--SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
            T++ L+   C   N E+  K  +++   G       +  LI+ Y     F++  Q++ +
Sbjct: 428 VTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEE 487

Query: 209 AE 210
            E
Sbjct: 488 ME 489



 Score = 45.8 bits (107), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 71/378 (18%), Positives = 152/378 (40%), Gaps = 25/378 (6%)

Query: 75  HNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQG 134
           + L P    F ++++   ++ D + AY+ ++ ++ + L P    YN+++  +   K+++ 
Sbjct: 386 NGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEE 445

Query: 135 ALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALIN 191
           A   +K+M +  V P+ +T++ LI         +   +  E+++  G +     +  LIN
Sbjct: 446 AEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLIN 505

Query: 192 AYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNL 250
                    +A  ++ D     V   +++ + L+      G+  DA   ++E+      +
Sbjct: 506 CLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEM--VAREI 563

Query: 251 EPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLL 308
            P  V    LI  L  +G++     L  E+       D    +I +       SSA ++ 
Sbjct: 564 VPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFD----VITYNSLISGYSSAGNVQ 619

Query: 309 KQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDE---LGLPPSRKCLD 365
           K L+      +  ++   +     IA         GL L++ I  E   + L P R   +
Sbjct: 620 KALELYETMKKSGIKPTLNTYHRLIAGCGKE----GLVLVEKIYQEMLQMNLVPDRVIYN 675

Query: 366 FLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM--- 422
            L+   V   D+++A  +    E  G+  + ++Y  +       G       L++ M   
Sbjct: 676 ALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGHFKEGRMHKVKNLVNDMKIR 735

Query: 423 ---PKDDPHVRFVIQACK 437
              PK + +   ++  CK
Sbjct: 736 GLIPKTETYDILIVGHCK 753


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/288 (20%), Positives = 131/288 (45%), Gaps = 11/288 (3%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNL 64
            I P   +Y  LI+    + K++ A+D+  +M +  + P+  T N ++   C+E  + N 
Sbjct: 231 RICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEG-KVND 289

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
            + +  ++   ++KP+  T+ S++     I   + A  + D +    ++    +Y  ++ 
Sbjct: 290 AKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVN 349

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQI 181
           G+ + K V  A+ + +EM    + P+  T+S LI        I   +K  +++   G   
Sbjct: 350 GFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPP 409

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
               + ++++A       +KA  ++ +  +  ++      + L+  L   GR  DA  V+
Sbjct: 410 NIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVF 469

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC 288
           E++   G NL+  A   +I+    +G  ++ + LL ++ D     +GC
Sbjct: 470 EDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMED-----NGC 512



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 72/354 (20%), Positives = 141/354 (39%), Gaps = 28/354 (7%)

Query: 83  TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM 142
           ++ ++I+   K+    +A  LL  +    + P A MYN I+    + K V  A  +  +M
Sbjct: 168 SYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQM 227

Query: 143 EQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEF 199
               + PD  T++ LI   S    +   I  + ++K        Y F  L++ +   G+ 
Sbjct: 228 VAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKV 287

Query: 200 EKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
             A+ V+ +  +  +K      ++L+    S  + + A  +++ +   G     +    +
Sbjct: 288 NDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTM 347

Query: 259 IEHLNSEGELNRLIQLLEE---------VHDPDYWMDGCCRLILHCVRFKQLSSATDLLK 309
           +        ++  I L EE         V      +DG C+L        ++  A  L+ 
Sbjct: 348 VNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKL-------GRIFYALKLVD 400

Query: 310 QLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLL- 368
           ++ D+ +   +       +  C+    D       + LL  +KD+ G+ P       L+ 
Sbjct: 401 EMHDRGQPPNIVTYSSILDALCKNHHVDK-----AIALLTNLKDQ-GIRPDMYTYTILIK 454

Query: 369 GACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           G C + R L+ A  ++++    G   +V +Y  M + F   G    A  LLSKM
Sbjct: 455 GLCQSGR-LEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKM 507



 Score = 44.7 bits (104), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 74/155 (47%), Gaps = 4/155 (2%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +I P+  +Y  LI   C L ++  AL +V++M      P+  T +SIL A  +++  +  
Sbjct: 371 KIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKA 430

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL--KEMNLMPTASMYNAIM 123
             +   +    ++P+  T+  +I    +    + A ++ +DL  K  NL   A  Y  ++
Sbjct: 431 IALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYA--YTVMI 488

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            G+  K     AL +L +ME     P+++T+  +I
Sbjct: 489 QGFCDKGFFDKALALLSKMEDNGCIPNAKTYELVI 523



 Score = 40.0 bits (92), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 53/264 (20%), Positives = 116/264 (43%), Gaps = 18/264 (6%)

Query: 42  LVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAY 101
           L PS+  + S LH  ++  E NL+     ++ H N  P +  F  ++S  VK K   +A 
Sbjct: 23  LFPSSIRLFSQLHHKQDE-ENNLISSFNHLLLHKNPTPPTFQFNKILSSLVKAKHHSTAL 81

Query: 102 SLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQG-ALMVLKEMEQANVKPDSQTFSYLIHN 160
           SL   + E+N + +      I+   F +  +   +  +  ++ +    P + TF+ LI  
Sbjct: 82  SLHQQM-ELNGIESDFFTFNILINCFSQLGLNSLSFSIFAKILKKGYHPTAITFNTLIKG 140

Query: 161 CSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV--LDAEIPVKS 215
              +  I   + +++++ + G  + +  +  LIN     G    A Q++  +D ++ V+ 
Sbjct: 141 LCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKL-VQP 199

Query: 216 RSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLL 275
            + + + ++  +      +DA  +Y ++       +     ALI   ++  +LN  I L 
Sbjct: 200 NAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLF 259

Query: 276 EEVH----DPDYW-----MDGCCR 290
            ++     +P+ +     +DG C+
Sbjct: 260 NKMKKENINPNVYTFNILVDGFCK 283


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/404 (18%), Positives = 175/404 (43%), Gaps = 16/404 (3%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS 86
           V +A ++ +++V+  +  +  T+N +++A  ++ +    +     +    + P+  T+ +
Sbjct: 235 VDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNT 294

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           +I+   +    + A+ L+D +    L P    YNAI+ G  +      A  VL EM +  
Sbjct: 295 LINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIG 354

Query: 147 VKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203
           + PD+ T++ L+  C   ++++   + ++++ S G       F ALI   +  G  ++A 
Sbjct: 355 MSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQAL 414

Query: 204 QVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
           +   D +   +   + + + L+     +G  S+A+ V +E+ E GC L+      ++  L
Sbjct: 415 KYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGL 474

Query: 263 NSEGELNRLIQLLEEVHD----PDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDD 318
             E  L+   +L  E+ +    PD++      LI    +   ++ A  L + +  +    
Sbjct: 475 CKEKMLSEADELFTEMTERGVFPDFYT--FTTLINGYSKDGNMNKAVTLFEMMIQRNLKP 532

Query: 319 EMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLK 378
           ++       + FC+ +  +  + ++  D++        + P+      L+    N   + 
Sbjct: 533 DVVTYNTLIDGFCKGSEMEKVN-ELWNDMIS-----RRIYPNHISYGILINGYCNMGCVS 586

Query: 379 RAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
            A  +W E    G    +++   + K +  +GN   A + LS M
Sbjct: 587 EAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNM 630



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 86/432 (19%), Positives = 168/432 (38%), Gaps = 67/432 (15%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  +I   C   K   A  V+++M++  + P T T N +L  C  +       
Sbjct: 320 LKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAE 379

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           RI+  +    + P+  +F ++I L  K    D A     D+K   L P   +Y  ++ G+
Sbjct: 380 RIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGF 439

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQITK 183
            R   +  AL V  EM +     D  T++ +++    E+   +  + + ++   G     
Sbjct: 440 CRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDF 499

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
           Y F  LIN Y+  G   K                                  A+ ++E +
Sbjct: 500 YTFTTLINGYSKDGNMNK----------------------------------AVTLFEMM 525

Query: 244 KEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHD----PDY-----WMDGCCRLI 292
            +   NL+P  V    LI+      E+ ++ +L  ++      P++      ++G C   
Sbjct: 526 IQR--NLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCN-- 581

Query: 293 LHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIK 352
           + CV     S A  L  ++ +K  +  +       + +C+       D        +F+ 
Sbjct: 582 MGCV-----SEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKAD--------EFLS 628

Query: 353 DEL--GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASG 410
           + L  G+ P     + L+   +   ++ RA  +  + EN+GL  +V++Y  +   F   G
Sbjct: 629 NMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQG 688

Query: 411 NRKSASKLLSKM 422
             + A  ++ KM
Sbjct: 689 RMQEAELIMLKM 700



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 79/154 (51%), Gaps = 2/154 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           I P+  SY  LI   C++  V  A  + ++MV+     +  T N+I+   C         
Sbjct: 565 IYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKAD 624

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +  M+    + P+  T+ ++I+  +K ++ D A++L++ ++   L+P    YN I+ G
Sbjct: 625 EFLSNMLLK-GIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNG 683

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159
           + R+  +Q A +++ +M +  V PD  T++ LI+
Sbjct: 684 FSRQGRMQEAELIMLKMIERGVNPDRSTYTSLIN 717



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/246 (20%), Positives = 109/246 (44%), Gaps = 6/246 (2%)

Query: 7   ITPSSASYKKLIT-YSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           + P   ++  LI  YS D   ++ A+ + E M+Q  L P   T N+++    +  E   V
Sbjct: 495 VFPDFYTFTTLINGYSKDG-NMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKV 553

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             ++  +    + PN  ++  +I+    +     A+ L D++ E     T    N I+ G
Sbjct: 554 NELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKG 613

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY---EQLKSAGGQIT 182
           Y R  +   A   L  M    + PD  T++ LI+    EE++ + +    +++++G    
Sbjct: 614 YCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPD 673

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
              +  ++N ++  G  ++A  ++L   E  V       ++L++   +     +A  V++
Sbjct: 674 VITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHD 733

Query: 242 EIKEAG 247
           E+ + G
Sbjct: 734 EMLQRG 739



 Score = 46.6 bits (109), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 46/248 (18%), Positives = 107/248 (43%), Gaps = 4/248 (1%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K+ ++P +A+Y  L+   C    +  A  + ++M    +VP   + ++++    ++   +
Sbjct: 352 KIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLD 411

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              + +  + +  L P++  +  +I    +      A  + D++ E   +     YN I+
Sbjct: 412 QALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTIL 471

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQ 180
            G  ++K +  A  +  EM +  V PD  TF+ LI+  S + ++   +  +E +     +
Sbjct: 472 NGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLK 531

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIV 239
                +  LI+ +    E EK  ++  D     +         L++   + G  S+A  +
Sbjct: 532 PDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRL 591

Query: 240 YEEIKEAG 247
           ++E+ E G
Sbjct: 592 WDEMVEKG 599



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 55/284 (19%), Positives = 121/284 (42%), Gaps = 25/284 (8%)

Query: 33  VVEQMVQGELVPSTETINSIL----HACEESYEFNLVRRIYPMICHHNLKPNSETFRSM- 87
           V+ +MV+   V   E + S++    +       F+L+ R Y  +    L+   E FR + 
Sbjct: 154 VILRMVRKSGVSRVEIVESLVLTYGNCGSNPLVFDLLVRTY--VQARKLREGCEAFRVLK 211

Query: 88  -----ISLN---------VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
                +S+N         VK+   D A+ +  ++    +       N ++    + + ++
Sbjct: 212 SKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIE 271

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK---YVFMALI 190
                L +ME+  V PD  T++ LI+    +  + + +E + S  G+  K   + + A+I
Sbjct: 272 NTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAII 331

Query: 191 NAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
           N     G++ +A+ V+ +  +I +   +   + L+     +    DA  +++E+   G  
Sbjct: 332 NGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVV 391

Query: 250 LEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL 293
            +  +  ALI  L+  G L++ ++   ++ +     D     IL
Sbjct: 392 PDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTIL 435


>gi|357470109|ref|XP_003605339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506394|gb|AES87536.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 472

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/342 (21%), Positives = 151/342 (44%), Gaps = 16/342 (4%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  ++  LI+  C    +  A  +V+ M     VP+  T NS++H      + +    +
Sbjct: 68  PNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSL 127

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +  +   PN  TF +++   VK         +L  L+E         Y+++++G F+
Sbjct: 128 LNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFK 187

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYV 185
           +   +  + + KEM +   KP++  +S LI     E   ++  +Y  ++K+ G     + 
Sbjct: 188 EGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFT 247

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEV-KSALVSALASHGRTSDAIIVYEEIK 244
           + +L+  Y   G+  KA  V  +      +  EV  S L++ L  +G+  +A+IV++++ 
Sbjct: 248 YSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEALIVWKQML 307

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV--HDPDYWMDGCCRLIL---HCVRFK 299
             G  L+  A  ++I    +   + + ++L  ++  H+P    D     IL    C +  
Sbjct: 308 SRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQPDVVTYNILLNAFCTK-N 366

Query: 300 QLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIA--TTDPP 339
            +S A D+L  + D+  D     ++   +IF +      DPP
Sbjct: 367 SVSRAIDILNTMLDQGCDP----DFITCDIFLKTLRDNMDPP 404



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 107/266 (40%), Gaps = 6/266 (2%)

Query: 22  CDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVRRIYPMICHHNLKPN 80
           C +  V  A++V   M     V    T ++++H  C E      V  +  M       PN
Sbjct: 11  CRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTF-PN 69

Query: 81  SETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLK 140
              F  +IS   K  D   A  L+D++     +P    YN+++ G   K  +  A+ +L 
Sbjct: 70  PVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLN 129

Query: 141 EMEQANVKPDSQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQITKYVFMALINAYTTCG 197
            M      P+  TF  L+          D ++    L+  G +  ++ + +LI+     G
Sbjct: 130 RMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKEG 189

Query: 198 EFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI 256
           + E   Q+  +  E   K  + V SAL+  L   G+  +A     E+K  G         
Sbjct: 190 KGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTYS 249

Query: 257 ALIEHLNSEGELNRLIQLLEEVHDPD 282
           +L+      G++++ I + +E+ D D
Sbjct: 250 SLMWGYFEAGDIHKAILVWKEMTDND 275


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 99/440 (22%), Positives = 178/440 (40%), Gaps = 46/440 (10%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEE---SYEFNLVRRI 68
           S+  LI   C   K+  AL    ++ +  L P   T  ++LH  C E   S   +   ++
Sbjct: 116 SFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQM 175

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +   C    +PN  TF ++++   +      A +LLD + E  L PT   Y  I+ G  +
Sbjct: 176 FETTC----RPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCK 231

Query: 129 KKDVQGALMVLKEMEQ-ANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKY 184
           K D   AL +L++ME+ +++ P+   +S +I +   +    D    + +++  G     +
Sbjct: 232 KGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLF 291

Query: 185 VFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
            + ++I  + + G +  A Q++ +  E  +       +AL++A    G+  +A  +Y+E 
Sbjct: 292 TYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDE- 350

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWM--DGC-------CRLILH 294
                 + PR +I      NS  +       L+   D  Y M   GC         LI  
Sbjct: 351 ------MLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDG 404

Query: 295 CVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDE 354
               K++    +LL ++  +               FC +      D+   LDL Q +   
Sbjct: 405 YCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVG-----DLNAALDLSQQMISS 459

Query: 355 LGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYE------NAGLPYN-----VLSYLWMY 403
              P    C   L G C N + LK A  ++K  +      +A  P+N     VL+Y  + 
Sbjct: 460 GVCPDIVTCNTLLDGLCDNGK-LKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILI 518

Query: 404 KAFLASGNRKSASKLLSKMP 423
              +  G    A +L  +MP
Sbjct: 519 CGLINEGKFLEAEELYEEMP 538



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/284 (20%), Positives = 120/284 (42%), Gaps = 15/284 (5%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P   +Y  +I   C   +   A  ++++M++ ++ P   T N++++A  +  +F    
Sbjct: 286 IFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAA 345

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +Y  +    + PN+ T+ SMI    K    D+A  +   +      P    +  ++ GY
Sbjct: 346 ELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGY 405

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITK 183
              K +   + +L EM +  +  ++ T++ LIH      D+   +   +Q+ S+G     
Sbjct: 406 CGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDI 465

Query: 184 YVFMALINAYTTCGEFEKARQVV---------LDAEIP---VKSRSEVKSALVSALASHG 231
                L++     G+ + A ++          LDA  P   V+      + L+  L + G
Sbjct: 466 VTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEG 525

Query: 232 RTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLL 275
           +  +A  +YEE+   G   +     ++I+ L  +  L+   Q+ 
Sbjct: 526 KFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF 569



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 60/331 (18%), Positives = 122/331 (36%), Gaps = 50/331 (15%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +I+P   +Y  LI       K   A ++ ++M+   ++P+T T NS++    +    +  
Sbjct: 320 KISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAA 379

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             ++ ++      P+  TF ++I      K  D    LL ++    L+     YN ++ G
Sbjct: 380 EDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHG 439

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSN--------------------- 163
           +    D+  AL + ++M  + V PD  T + L+   C N                     
Sbjct: 440 FCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLD 499

Query: 164 --------EEDIIKY-------------------YEQLKSAGGQITKYVFMALINAYTTC 196
                   E D++ Y                   YE++   G       + ++I+     
Sbjct: 500 ASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQ 559

Query: 197 GEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255
              ++A Q+ +       S + V  + L++     GR  D + ++ E+   G   +    
Sbjct: 560 SRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIY 619

Query: 256 IALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
           I LI      G +N  + + +E+     + D
Sbjct: 620 ITLIYGFRKVGNINGALDIFQEMISSGVYPD 650



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/286 (19%), Positives = 113/286 (39%), Gaps = 46/286 (16%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           +  ++ +Y  LI   C +  ++ ALD+ +QM+   + P   T N++L             
Sbjct: 426 LVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDG----------- 474

Query: 67  RIYPMICHHN-LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
                +C +  LK   E F++M    +   D D+++          + P    YN ++ G
Sbjct: 475 -----LCDNGKLKDALEMFKAMQKSKM---DLDASHPF------NGVEPDVLTYNILICG 520

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQI---T 182
              +     A  + +EM    + PD+ T+S +I     +  + +  +   S G +     
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPN 580

Query: 183 KYVFMALINAYTTCGEFEKA---------RQVVLDAEIPVKSRSEVKSALVSALASHGRT 233
              F  LIN Y   G  +           R +V DA I +         L+      G  
Sbjct: 581 VVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYI--------TLIYGFRKVGNI 632

Query: 234 SDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279
           + A+ +++E+  +G   +   +  ++    S+ EL R + +LE++ 
Sbjct: 633 NGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQ 678



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/252 (19%), Positives = 109/252 (43%), Gaps = 10/252 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P+   Y  +I   C   +   A ++  +M +  + P   T NS++     S  ++   
Sbjct: 251 IIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAE 310

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           ++   +    + P+  T+ ++I+  VK   F  A  L D++    ++P    YN+++ G+
Sbjct: 311 QLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGF 370

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITK 183
            ++  +  A  +   M      PD  TF+ LI   C  +  +D ++   ++   G     
Sbjct: 371 CKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANT 430

Query: 184 YVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
             +  LI+ +   G+   A    +Q++     P        + L+  L  +G+  DA+ +
Sbjct: 431 VTYNTLIHGFCLVGDLNAALDLSQQMISSGVCP---DIVTCNTLLDGLCDNGKLKDALEM 487

Query: 240 YEEIKEAGCNLE 251
           ++ ++++  +L+
Sbjct: 488 FKAMQKSKMDLD 499



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/257 (19%), Positives = 107/257 (41%), Gaps = 11/257 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+D+   M++   +PS      ++         +LV  +Y  +    ++ +  +F  +I 
Sbjct: 63  AIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIK 122

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
                     A S    + ++ L P    +  ++ G   +  V  AL    +M +   +P
Sbjct: 123 CFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRP 182

Query: 150 DSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           +  TF+ L++    E  I++     +++   G Q T+  +  +++     G+   A  ++
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLL 242

Query: 207 LDAE-----IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEH 261
              E     IP      + SA++ +L   GR SDA  ++ E++E G   +     ++I  
Sbjct: 243 RKMEEVSHIIP---NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 262 LNSEGELNRLIQLLEEV 278
             S G  +   QLL+E+
Sbjct: 300 FCSSGRWSDAEQLLQEM 316


>gi|449467169|ref|XP_004151297.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Cucumis sativus]
 gi|449518833|ref|XP_004166440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Cucumis sativus]
          Length = 609

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/247 (21%), Positives = 111/247 (44%), Gaps = 4/247 (1%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M     + P++ +Y  L+   C    +  A +VV QM+   + P   T N++  A  +  
Sbjct: 188 MTRTTNLKPNNRTYNILVGALCKKKSIKEAWNVVHQMLASGVQPDVVTYNTLARAYAQDG 247

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           E N    I   + +  + PN  T   ++    +  +   A  ++  ++++ + P   ++N
Sbjct: 248 ETNKAESIIVDMLNKKVNPNERTCGIIVGGYCEQGNLAEALRVVYRMRDLGIHPNLVIFN 307

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSA 177
           +++ G+    D  G    L  ME++ VKPD  TFS +++  S+   + K    ++ +  +
Sbjct: 308 SLIKGFLDIGDSDGVDKALTMMEESGVKPDVITFSTIMNGWSSAGRMDKCQEIFDDMLKS 367

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDA 236
           G +   +VF  L   +   GE  KA  ++   ++  V+    + + ++S   + G+   A
Sbjct: 368 GIEPDIHVFSILAKGFVRAGEPVKAESLLNFMSKYGVRPNVVIFTTIISGWCTAGKMEKA 427

Query: 237 IIVYEEI 243
             V+E +
Sbjct: 428 WKVFEHM 434



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 67/336 (19%), Positives = 148/336 (44%), Gaps = 21/336 (6%)

Query: 100 AYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159
           A  + + L E    PT   Y A++A   R+K  +    +L EME+  +KPDS   + +I+
Sbjct: 76  AQFIFNSLVEQGHRPTTVTYTALVAALTRQKRFKAISGLLSEMEETGIKPDSILLNAIIN 135

Query: 160 NCS---NEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV--VLDAEIPVK 214
             S   N ++ ++ +++++ +G + T   F  LI  Y    + E++ ++  ++     +K
Sbjct: 136 AFSESGNVKEAMEIFQKMEESGCKPTTSTFNTLIKGYGIIRKPEESMKLLELMTRTTNLK 195

Query: 215 SRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNR---- 270
             +   + LV AL       +A  V  ++  +G   +      L      +GE N+    
Sbjct: 196 PNNRTYNILVGALCKKKSIKEAWNVVHQMLASGVQPDVVTYNTLARAYAQDGETNKAESI 255

Query: 271 LIQLLEEVHDPDYWMDGCCRLIL--HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSE 328
           ++ +L +  +P+   +  C +I+  +C +   L+ A  ++ +++D      + +     +
Sbjct: 256 IVDMLNKKVNPN---ERTCGIIVGGYCEQ-GNLAEALRVVYRMRDLGIHPNLVIFNSLIK 311

Query: 329 IFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYE 388
            F  I  +D      G+D    + +E G+ P       ++    +A  + +   I+ +  
Sbjct: 312 GFLDIGDSD------GVDKALTMMEESGVKPDVITFSTIMNGWSSAGRMDKCQEIFDDML 365

Query: 389 NAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424
            +G+  ++  +  + K F+ +G    A  LL+ M K
Sbjct: 366 KSGIEPDIHVFSILAKGFVRAGEPVKAESLLNFMSK 401



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 56/275 (20%), Positives = 117/275 (42%), Gaps = 18/275 (6%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S  KL+    +  K   A  +   +V+    P+T T  +++ A      F  +  +   +
Sbjct: 59  SRTKLMNILVERGKPQEAQFIFNSLVEQGHRPTTVTYTALVAALTRQKRFKAISGLLSEM 118

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               +KP+S    ++I+   +  +   A  +   ++E    PT S +N ++ GY   +  
Sbjct: 119 EETGIKPDSILLNAIINAFSESGNVKEAMEIFQKMEESGCKPTTSTFNTLIKGYGIIRKP 178

Query: 133 QGALMVLKEMEQ-ANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKYVFMA 188
           + ++ +L+ M +  N+KP+++T++ L+     ++ I + +    Q+ ++G Q     +  
Sbjct: 179 EESMKLLELMTRTTNLKPNNRTYNILVGALCKKKSIKEAWNVVHQMLASGVQPDVVTYNT 238

Query: 189 LINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           L  AY   GE  KA  +++D     V         +V      G  ++A+ V   +++ G
Sbjct: 239 LARAYAQDGETNKAESIIVDMLNKKVNPNERTCGIIVGGYCEQGNLAEALRVVYRMRDLG 298

Query: 248 CNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPD 282
             + P  VI            N LI+   ++ D D
Sbjct: 299 --IHPNLVI-----------FNSLIKGFLDIGDSD 320



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/257 (18%), Positives = 111/257 (43%), Gaps = 19/257 (7%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P S     +I    +   V  A+++ ++M +    P+T T N+++        + ++R
Sbjct: 123 IKPDSILLNAIINAFSESGNVKEAMEIFQKMEESGCKPTTSTFNTLIKG------YGIIR 176

Query: 67  R-------IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMY 119
           +       +  M    NLKPN+ T+  ++    K K    A++++  +    + P    Y
Sbjct: 177 KPEESMKLLELMTRTTNLKPNNRTYNILVGALCKKKSIKEAWNVVHQMLASGVQPDVVTY 236

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-C--SNEEDIIKYYEQLKS 176
           N +   Y +  +   A  ++ +M    V P+ +T   ++   C   N  + ++   +++ 
Sbjct: 237 NTLARAYAQDGETNKAESIIVDMLNKKVNPNERTCGIIVGGYCEQGNLAEALRVVYRMRD 296

Query: 177 AGGQITKYVFMALINAYTTCGEFEKA-RQVVLDAEIPVKSRSEVKSALVSALASHGRTSD 235
            G      +F +LI  +   G+ +   + + +  E  VK      S +++  +S GR   
Sbjct: 297 LGIHPNLVIFNSLIKGFLDIGDSDGVDKALTMMEESGVKPDVITFSTIMNGWSSAGRMDK 356

Query: 236 AIIVYEEIKEAGCNLEP 252
              +++++ ++G  +EP
Sbjct: 357 CQEIFDDMLKSG--IEP 371


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 100/443 (22%), Positives = 181/443 (40%), Gaps = 52/443 (11%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEE---SYEFNLVRRI 68
           S+  LI   C   K+  AL    ++ +  L P   T N++LH  C E   S   NL  ++
Sbjct: 116 SFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQM 175

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +   C    +PN  TF ++++   +      A +LLD + E  L PT   Y  I+ G  +
Sbjct: 176 FETTC----RPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCK 231

Query: 129 KKDVQGALMVLKEMEQ-ANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKY 184
           K D   AL +L++ME+ +++ P+   +S +I +   +    D    + +++  G     +
Sbjct: 232 KGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLF 291

Query: 185 VFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
            + ++I  + + G +  A Q++ +  E  +       +AL++A    G+  +A  +Y+E+
Sbjct: 292 TYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEM 351

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWM--DGCCRLILHCVRFKQL 301
              G         ++I+    +  L+    +        Y M   GC     + + F  L
Sbjct: 352 LPRGIIPNTITYSSMIDGFCKQNRLDAAEHMF-------YLMATKGCSP---NLITFNTL 401

Query: 302 SSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTD----------PPDVQIGLDLLQFI 351
                  K++     DD M + +  +E      TT             D+   LDLLQ +
Sbjct: 402 IDGYCGAKRI-----DDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM 456

Query: 352 KDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYE------NAGLPYN-----VLSYL 400
                 P    C   L G C N + LK A  ++K  +      +A  P+N     V +Y 
Sbjct: 457 ISSGLCPDIVTCDTLLDGLCDNGK-LKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYN 515

Query: 401 WMYKAFLASGNRKSASKLLSKMP 423
            +    +  G    A +L  +MP
Sbjct: 516 ILISGLINEGKFLEAEELYEEMP 538



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 118/281 (41%), Gaps = 26/281 (9%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +I+P   +Y  LI       K   A ++ ++M+   ++P+T T +S++    +    +  
Sbjct: 320 KISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAA 379

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             ++ ++      PN  TF ++I      K  D    LL ++ E  L+   + YN ++ G
Sbjct: 380 EHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHG 439

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYV 185
           ++   D+  AL +L+EM  + + PD  T   L+    +   +    E  K          
Sbjct: 440 FYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKV--------- 490

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIP---VKSRSEVKSALVSALASHGRTSDAIIVYEE 242
                         +K+++  LDA  P   V+   +  + L+S L + G+  +A  +YEE
Sbjct: 491 -------------MQKSKK-DLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEE 536

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY 283
           +   G   +     ++I+ L  +  L+   Q+ + +    +
Sbjct: 537 MPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSF 577



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/291 (18%), Positives = 121/291 (41%), Gaps = 23/291 (7%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           +P+  ++  LI   C   ++   ++++ +M +  LV  T T N+++H      + N    
Sbjct: 392 SPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALD 451

Query: 68  IYPMICHHNLKPN---SETFRSMISLNVKIKDFDSAYSLLDDLKE--------MNLMPTA 116
           +   +    L P+    +T    +  N K+KD    + ++   K+          + P  
Sbjct: 452 LLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDV 511

Query: 117 SMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQ 173
             YN +++G   +     A  + +EM    + PD+ T+S +I     +   ++  + ++ 
Sbjct: 512 QTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDS 571

Query: 174 LKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSA-----LVSALA 228
           + S         F  LIN Y   G  +   ++  +    +  R  V +A     L+    
Sbjct: 572 MGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCE----MGRRGIVANAITYITLICGFR 627

Query: 229 SHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279
             G  + A+ +++E+  +G   +   +  ++  L S+ EL R + +LE++ 
Sbjct: 628 KVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/440 (18%), Positives = 168/440 (38%), Gaps = 59/440 (13%)

Query: 2   HAKLEIT--PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEE 58
           H   E T  P+  ++  L+   C   ++  A+ ++++M++  L P+  T  +I+   C++
Sbjct: 173 HQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKK 232

Query: 59  S---YEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPT 115
                  NL+R++  +    ++ PN   + ++I    K      A +L  +++E  + P 
Sbjct: 233 GDTVSALNLLRKMEEV---SHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289

Query: 116 ASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYE 172
              YN+++ G+        A  +L+EM +  + PD  T++ LI+    E       + Y+
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYD 349

Query: 173 QLKSAGGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHG 231
           ++   G       + ++I+ +      + A  +  L A           + L+       
Sbjct: 350 EMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAK 409

Query: 232 RTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDP---------D 282
           R  D + +  E+ E G   +      LI      G+LN  + LL+E+            D
Sbjct: 410 RIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCD 469

Query: 283 YWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQ 342
             +DG C          +L  A ++ K ++   KD + +  ++  E          PDVQ
Sbjct: 470 TLLDGLC-------DNGKLKDALEMFKVMQKSKKDLDASHPFNGVE----------PDVQ 512

Query: 343 IGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWM 402
                                 + L+   +N      A  +++E  + G+  + ++Y  M
Sbjct: 513 T--------------------YNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSM 552

Query: 403 YKAFLASGNRKSASKLLSKM 422
                       A+++   M
Sbjct: 553 IDGLCKQSRLDEATQMFDSM 572



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/161 (21%), Positives = 75/161 (46%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  LI+   +  K   A ++ E+M    +VP T T +S++    +    +   
Sbjct: 507 VEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEAT 566

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++  +   +  PN  TF ++I+   K    D    L  ++    ++  A  Y  ++ G+
Sbjct: 567 QMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGF 626

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI 167
            +  ++ GAL + +EM  + V PD+ T   ++    ++E++
Sbjct: 627 RKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEEL 667



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/257 (20%), Positives = 109/257 (42%), Gaps = 11/257 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+D+   M++   +PS      ++         +LV  +Y  +    ++ +  +F  +I 
Sbjct: 63  AIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIK 122

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
                     A S    + ++ L P    +N ++ G   +  V  AL +  +M +   +P
Sbjct: 123 CFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRP 182

Query: 150 DSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           +  TF+ L++    E  I++     +++   G Q T+  +  +++     G+   A  ++
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLL 242

Query: 207 LDAE-----IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEH 261
              E     IP      + SA++ +L   GR SDA  ++ E++E G   +     ++I  
Sbjct: 243 RKMEEVSHIIP---NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 262 LNSEGELNRLIQLLEEV 278
             S G  +   QLL+E+
Sbjct: 300 FCSSGRWSDAEQLLQEM 316


>gi|297599556|ref|NP_001047351.2| Os02g0601600 [Oryza sativa Japonica Group]
 gi|255671066|dbj|BAF09265.2| Os02g0601600 [Oryza sativa Japonica Group]
          Length = 466

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 112/241 (46%), Gaps = 9/241 (3%)

Query: 45  STETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLL 104
           +TET+N +L    +  +  + R ++ ++  H + P++ TF   +     I+  D A   +
Sbjct: 150 NTETMNVLLDVLCKERKIEVAREVFAVLSPH-IPPDAYTFNIFVHGWCSIRRIDEAMWTI 208

Query: 105 DDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---C 161
           +++K     P+   Y  ++  Y ++++ +    VL  M      P+  T++ ++ +   C
Sbjct: 209 EEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIMTSLAKC 268

Query: 162 SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE--- 218
              E+ +    ++KS+G +     + +LIN     G   +A Q V   E+P+   S    
Sbjct: 269 ERFEEALSVSHRMKSSGCKPDTLFYNSLINLLGKSGHLFEASQ-VFRVEMPMNGVSHNLA 327

Query: 219 VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE-HLNSEGELNRLIQLLEE 277
             + ++S    +GR  DA+ V +E++   C  + ++   L+   L+  G+ + +  LL E
Sbjct: 328 TYNTMISIFCYYGRDDDALNVLKEMEAQSCKPDIQSYRPLLRLFLSRRGQADTVRHLLSE 387

Query: 278 V 278
           +
Sbjct: 388 L 388



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 73/190 (38%), Gaps = 40/190 (21%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P + ++   +   C + ++  A+  +E+M +    PS  T  ++L A  +   F  V 
Sbjct: 181 IPPDAYTFNIFVHGWCSIRRIDEAMWTIEEMKRRGFPPSVITYTTVLEAYCKQRNFRRVY 240

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI---- 122
            +   +      PN  T+  +++   K + F+ A S+   +K     P    YN++    
Sbjct: 241 EVLDSMGSQGCHPNVITYTMIMTSLAKCERFEEALSVSHRMKSSGCKPDTLFYNSLINLL 300

Query: 123 ------------------MAG----------------YFRKKDVQGALMVLKEMEQANVK 148
                             M G                Y+ + D   AL VLKEME  + K
Sbjct: 301 GKSGHLFEASQVFRVEMPMNGVSHNLATYNTMISIFCYYGRDD--DALNVLKEMEAQSCK 358

Query: 149 PDSQTFSYLI 158
           PD Q++  L+
Sbjct: 359 PDIQSYRPLL 368


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 110/245 (44%), Gaps = 12/245 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL++ E+M++  + P   T  ++L AC  S    L R+++  +  H    N +   ++I 
Sbjct: 180 ALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALID 239

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           L  K  + ++A  L   L   +++     +N ++ GY      + AL++ +EM ++   P
Sbjct: 240 LYSKCGEVETACGLFQGLSYKDVIS----WNTLIGGYTHMNLYKEALLLFQEMLRSGETP 295

Query: 150 DSQTFSYLIHNCSNEEDI-----IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204
           +  T   ++  C++   I     I  Y   +  G      +  +LI+ Y  CG+ E A Q
Sbjct: 296 NDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQ 355

Query: 205 VVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
           V     +  KS S   +A++   A HGR   +  ++  +++ G   +    + L+   + 
Sbjct: 356 VF--NSMLHKSLSS-WNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSH 412

Query: 265 EGELN 269
            G L+
Sbjct: 413 SGMLD 417



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/196 (21%), Positives = 83/196 (42%), Gaps = 30/196 (15%)

Query: 37  MVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKD 96
           MV   L+P++ T   +L +C +S  F   ++I+  +       +     S+IS+ V+   
Sbjct: 55  MVSLGLLPNSYTFPFLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWR 114

Query: 97  FDSAYSLLDDLKEMNLMPTASM---------------------------YNAIMAGYFRK 129
            + AY + D     +++   ++                           +NA+++GY   
Sbjct: 115 LEDAYKVFDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAET 174

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVF 186
              + AL + +EM + NV+PD  T+  ++  C++   I    + +  +   G      + 
Sbjct: 175 GCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIV 234

Query: 187 MALINAYTTCGEFEKA 202
            ALI+ Y+ CGE E A
Sbjct: 235 NALIDLYSKCGEVETA 250



 Score = 41.6 bits (96), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 17/165 (10%)

Query: 87  MISLNVKIKDFDS---AYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME 143
           +I L V    FD    A S+ + ++E    P   ++N ++ G+    D   +L +   M 
Sbjct: 1   LIELCVPSPHFDGLPYATSVFETIQE----PNQLIWNTMIRGHALSSDPVSSLTLYVCMV 56

Query: 144 QANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINAYTTCGEFE 200
              + P+S TF +L+ +C+  +      + + Q+   G  +  YV  +LI+ Y      E
Sbjct: 57  SLGLLPNSYTFPFLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLE 116

Query: 201 KARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEI 243
            A +V         S  +V S  AL++  AS G    A  +++EI
Sbjct: 117 DAYKV-----FDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEI 156


>gi|9755888|emb|CAC01941.1| RSP67.2 [Raphanus sativus]
          Length = 700

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 79/404 (19%), Positives = 178/404 (44%), Gaps = 26/404 (6%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P +A++  LI+ +      + A++  E+M    L P   T+ +++ A   +    +  
Sbjct: 204 VKPDNATFTTLISCARQCGLPNRAVEWFEKMPSFGLEPDNVTLAAMIDAYGRAGNVEMAL 263

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +Y        + +  TF ++I +     ++D   ++ +++K + + P   +YN ++   
Sbjct: 264 SLYDRARTEKWRIDPVTFSTLIRIYGYAGNYDGCLNIYEEMKSLGVKPNLVIYNRLLDSM 323

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITK 183
            + K    A M+ K++     +P+  T++ LI         ED +  Y Q+K  G ++T 
Sbjct: 324 GKAKRPWQATMIHKDLISNGFEPNWSTYAALIRAYGRARYGEDALVIYRQMKGKGMELTV 383

Query: 184 YVFMALINAYTTCGEFEKARQVVLD--AEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
            ++  L++     G  ++A ++  D  +    +  S   S+L++  +  GR S+A     
Sbjct: 384 LLYNTLLSMCADIGYVDEAFEIFQDMKSSGTCEPDSWTFSSLITVYSCCGRVSEAEAALR 443

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDYWMDGCCRLILHCVR 297
           E++EAG       + +LI+      +++ +++  E+V     +PD    GC   ++    
Sbjct: 444 EMREAGFEPTLFVLTSLIQCYGKAKQVDDVVRTFEQVLELGIEPDDRFCGCLLNVMTQTP 503

Query: 298 FKQLSSATDLLKQLKDKF-KDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELG 356
            +++      +++ K K  + ++M +E    E  C+         +        + D +G
Sbjct: 504 KEEIGKLIGCVEKAKPKLGRVEKMLVE----EENCEEGVLKKEASE--------LIDSIG 551

Query: 357 LPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYL 400
              ++  L+ L+  CVN   L++A  I +     GL Y++ S L
Sbjct: 552 SDVNKAYLNCLIDLCVNLNKLEKACEILQ----LGLEYDIYSGL 591



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 10/177 (5%)

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTAS--MYNAIMAGYFRKKDVQGALMVLKEME 143
           ++++LN  + + ++A  +L++L E  L PT    +YN  M  + + KD++ +  +  EM 
Sbjct: 143 AVVALN-NMTNPETAPLVLNNLLE-TLKPTREVILYNVTMKVFRKSKDLEKSEKLFDEML 200

Query: 144 QANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFE 200
           Q  VKPD+ TF+ LI     C      ++++E++ S G +       A+I+AY   G  E
Sbjct: 201 QRGVKPDNATFTTLISCARQCGLPNRAVEWFEKMPSFGLEPDNVTLAAMIDAYGRAGNVE 260

Query: 201 KARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI 256
            A  +   A         V  S L+      G     + +YEE+K  G  ++P  VI
Sbjct: 261 MALSLYDRARTEKWRIDPVTFSTLIRIYGYAGNYDGCLNIYEEMKSLG--VKPNLVI 315


>gi|357140125|ref|XP_003571621.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Brachypodium distachyon]
          Length = 814

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 72/147 (48%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  +I   C   K+  AL + + M++    P     NSI+HA  +  +      +   +
Sbjct: 514 TYNIMIQGCCKDSKIEEALKLRDDMIRKGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQM 573

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               ++P+  ++ ++I    K KD   A   L++L    L P A +YNA++ GY R  ++
Sbjct: 574 KIEGVQPDVVSYGTIIDGYCKAKDIQKANEYLNELMACGLKPNAVIYNALIGGYGRNGNI 633

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIH 159
            GA+ VL  ME   ++P + T+  L+H
Sbjct: 634 SGAIGVLDTMESIGIQPTNVTYCSLMH 660



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/254 (20%), Positives = 111/254 (43%), Gaps = 4/254 (1%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+ +  +M++  L  +  T N+++H   E         +   + +  ++ ++ T+  MI 
Sbjct: 461 AVGIWLKMLEKGLCINIATSNALIHGLCEGKNMKGATEVLRTMVNKGMELDNITYNIMIQ 520

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              K    + A  L DD+      P A M+N+I+  Y     ++ AL +L +M+   V+P
Sbjct: 521 GCCKDSKIEEALKLRDDMIRKGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQP 580

Query: 150 DSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D  ++  +I      +DI K   Y  +L + G +    ++ ALI  Y   G    A  V+
Sbjct: 581 DVVSYGTIIDGYCKAKDIQKANEYLNELMACGLKPNAVIYNALIGGYGRNGNISGAIGVL 640

Query: 207 LDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
              E I ++  +    +L+  +   G   +A  ++E+ ++    +       +I+ L   
Sbjct: 641 DTMESIGIQPTNVTYCSLMHWMCHAGLVDEAKTMFEQSRKNSIEVGVVGYTIMIQGLCKI 700

Query: 266 GELNRLIQLLEEVH 279
           G+++  +   EE+ 
Sbjct: 701 GKMDEAMNYFEEMR 714



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 104/240 (43%), Gaps = 10/240 (4%)

Query: 12  ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPM 71
           A+   LI   C+   +  A +V+  MV   +     T N ++  C +  +     ++   
Sbjct: 478 ATSNALIHGLCEGKNMKGATEVLRTMVNKGMELDNITYNIMIQGCCKDSKIEEALKLRDD 537

Query: 72  ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131
           +     KP++  F S+I     +   + A  LL  +K   + P    Y  I+ GY + KD
Sbjct: 538 MIRKGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQPDVVSYGTIIDGYCKAKD 597

Query: 132 VQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMA 188
           +Q A   L E+    +KP++  ++ LI       +I   I   + ++S G Q T   + +
Sbjct: 598 IQKANEYLNELMACGLKPNAVIYNALIGGYGRNGNISGAIGVLDTMESIGIQPTNVTYCS 657

Query: 189 LINAYTTCGEFEKARQVVLDAEIPVKSRSEVK----SALVSALASHGRTSDAIIVYEEIK 244
           L++     G  ++A+ +    E   K+  EV     + ++  L   G+  +A+  +EE++
Sbjct: 658 LMHWMCHAGLVDEAKTMF---EQSRKNSIEVGVVGYTIMIQGLCKIGKMDEAMNYFEEMR 714



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 84/426 (19%), Positives = 172/426 (40%), Gaps = 17/426 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETI--NSILHACEESYEFNL 64
           +TP+  SY  +I   C + KV     ++  ++   L  S   +  N ++ A  +S   + 
Sbjct: 225 VTPNGYSYTSMIKALCKVGKVDDGFKILSDLIHAGLQQSAGAVPYNLLMDALCKSGRVDE 284

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
             R+   +    + P+  TF  +I+   +   F    +LL +++ + + P   + N ++ 
Sbjct: 285 AIRLKGRMEESRVAPSMVTFGILINGLKRSDRFGEVGALLREMEGLGITPNEVICNELID 344

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQI 181
            + RK     A+ +  EM    +K  + T++ +      E   E   +  E++ S G  I
Sbjct: 345 WHCRKGHFTEAIRLFDEMVSKEMKSTAVTYNLIARALCKEGEMERAERILEEMLSTGMTI 404

Query: 182 TKYVFMALINAY-TTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
              +F +++       G  E   +++ +  +  +K    + +A    L    R  +A+ +
Sbjct: 405 HSGLFNSVVAGLLQRTGRLESVVRLISEMVKRGMKPNDALMTACTKQLCQGRRHQEAVGI 464

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCR--LILHCVR 297
           + ++ E G  +      ALI  L     +    ++L  + +    +D      +I  C +
Sbjct: 465 WLKMLEKGLCINIATSNALIHGLCEGKNMKGATEVLRTMVNKGMELDNITYNIMIQGCCK 524

Query: 298 FKQLSSATDLLKQL-KDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELG 356
             ++  A  L   + +  FK D     Y F+ I    A  D   ++  L LL  +K E G
Sbjct: 525 DSKIEEALKLRDDMIRKGFKPDA----YMFNSII--HAYCDLGKMEEALHLLGQMKIE-G 577

Query: 357 LPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSAS 416
           + P       ++     A+D+++A+    E    GL  N + Y  +   +  +GN   A 
Sbjct: 578 VQPDVVSYGTIIDGYCKAKDIQKANEYLNELMACGLKPNAVIYNALIGGYGRNGNISGAI 637

Query: 417 KLLSKM 422
            +L  M
Sbjct: 638 GVLDTM 643



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 116/282 (41%), Gaps = 14/282 (4%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           TPSS         S     + +A+D    +      PS +T N++L A   +       +
Sbjct: 155 TPSSDLLINTCVTSSARGSLRLAVDAFHVLSSRRASPSVKTCNALLEALARTGNLGATCK 214

Query: 68  IY-PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM--YNAIMA 124
           ++  M     + PN  ++ SMI    K+   D  + +L DL    L  +A    YN +M 
Sbjct: 215 VFDEMRDCKTVTPNGYSYTSMIKALCKVGKVDDGFKILSDLIHAGLQQSAGAVPYNLLMD 274

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQI 181
              +   V  A+ +   ME++ V P   TF  LI+     +   ++     +++  G   
Sbjct: 275 ALCKSGRVDEAIRLKGRMEESRVAPSMVTFGILINGLKRSDRFGEVGALLREMEGLGITP 334

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIP--VKSRSEVKSALVSALASHGRTSDAIIV 239
            + +   LI+ +   G F +A + + D  +   +KS +   + +  AL   G    A  +
Sbjct: 335 NEVICNELIDWHCRKGHFTEAIR-LFDEMVSKEMKSTAVTYNLIARALCKEGEMERAERI 393

Query: 240 YEEIKEAGCNLEP---RAVIALIEHLNSEGELNRLIQLLEEV 278
            EE+   G  +      +V+A +  L   G L  +++L+ E+
Sbjct: 394 LEEMLSTGMTIHSGLFNSVVAGL--LQRTGRLESVVRLISEM 433


>gi|242069107|ref|XP_002449830.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
 gi|241935673|gb|EES08818.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
          Length = 676

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 95/216 (43%), Gaps = 16/216 (7%)

Query: 75  HNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQG 134
             L PN+ T+ ++I  + +   FD A+ L++ +K    +P    YNAI+ G+ +K  +Q 
Sbjct: 351 QGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQ 410

Query: 135 ALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALIN 191
           A  VL+      + PD  T++ LI     +  I   +  + Q+           +  +I 
Sbjct: 411 AYKVLRMATSQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIA 470

Query: 192 AYTTCGE-------FEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
            Y    +       F+K   + L   +P K   +  +++++     G+++ A+ V+E + 
Sbjct: 471 MYCQQRQMEQSQQLFDKCLSIGL---VPTK---QTYTSMIAGYCRVGKSTSALKVFERMV 524

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           + GC  +P    ALI  L  E  L     L E + D
Sbjct: 525 QHGCLPDPITYGALISGLCKESRLEEARALFETMLD 560



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 9/169 (5%)

Query: 4   KLE-ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINS-ILHACEE--- 58
           KLE   P+  +Y  +I   C   K+  A  V+       L P   T    I   C++   
Sbjct: 384 KLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVTYTMLITEHCKQGHI 443

Query: 59  SYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM 118
           +Y  +L  ++    CH    P+ +T+ ++I++  + +  + +  L D    + L+PT   
Sbjct: 444 TYALDLFNQMAENSCH----PDIDTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQT 499

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI 167
           Y +++AGY R      AL V + M Q    PD  T+  LI     E  +
Sbjct: 500 YTSMIAGYCRVGKSTSALKVFERMVQHGCLPDPITYGALISGLCKESRL 548



 Score = 46.2 bits (108), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 29/143 (20%), Positives = 64/143 (44%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  LIT  C    +  ALD+  QM +    P  +T  +I+    +  +    +
Sbjct: 423 LCPDKVTYTMLITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAMYCQQRQMEQSQ 482

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++       L P  +T+ SMI+   ++    SA  + + + +   +P    Y A+++G 
Sbjct: 483 QLFDKCLSIGLVPTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLPDPITYGALISGL 542

Query: 127 FRKKDVQGALMVLKEMEQANVKP 149
            ++  ++ A  + + M   ++ P
Sbjct: 543 CKESRLEEARALFETMLDKHMVP 565


>gi|358347568|ref|XP_003637828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503763|gb|AES84966.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 529

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/280 (20%), Positives = 123/280 (43%), Gaps = 18/280 (6%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
            I PS  +Y  LI   C + ++  A+ ++ +M+  ++ P+  T + ++ A  +  +    
Sbjct: 182 RICPSVVTYNTLICGLCIMAQLKDAIGLLHKMILEDINPTVYTFSILIDAFCKEGKMKEA 241

Query: 66  RRIYPMICHHNLKPNSETFRSMIS--------------LNVKIKDFDSAYSLLDDLKEMN 111
           + ++ ++   ++KPN  T+ S++                N  IK  D A +L +++    
Sbjct: 242 KNVFAVMMKEDVKPNIVTYNSLMDGHHLVNVVKKAKSIFNTMIKMVDEAMNLFEEMHFKQ 301

Query: 112 LMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDII 168
           + P   +YN+++ G  +      AL  + EM      PD  T++ L+   C N   +  I
Sbjct: 302 IYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYRGQPPDIFTYNSLLDALCKNYHVDKAI 361

Query: 169 KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSAL 227
           +   +LK  G Q +   +  LIN     G  + A +V  D  +    +     +A++   
Sbjct: 362 ELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDAEKVFEDLLVKGYNTDVYTYNAMIKGF 421

Query: 228 ASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
              G   + + +  ++K++GC+ + +    +I  L  +GE
Sbjct: 422 CKKGLFDETLAMVSKMKDSGCSPDAKNCEIIIRSLFDKGE 461



 Score = 42.0 bits (97), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 66/158 (41%), Gaps = 1/158 (0%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           MH K +I P    Y  LI   C   +   AL  + +M      P   T NS+L A  ++Y
Sbjct: 297 MHFK-QIYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYRGQPPDIFTYNSLLDALCKNY 355

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
             +    +   +    ++P+  T+  +I+   K      A  + +DL           YN
Sbjct: 356 HVDKAIELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDAEKVFEDLLVKGYNTDVYTYN 415

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
           A++ G+ +K      L ++ +M+ +   PD++    +I
Sbjct: 416 AMIKGFCKKGLFDETLAMVSKMKDSGCSPDAKNCEIII 453


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/372 (20%), Positives = 156/372 (41%), Gaps = 35/372 (9%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQM--VQGELVPSTETINSILHA-CEESYEFNLV 65
           P   ++  +I   C   ++  A  VV++M  ++  L P   T NS+L   C+E    +  
Sbjct: 169 PELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILD-A 227

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             ++        +PN  T+ ++I    K+   D A  LL  + E+        Y+ ++ G
Sbjct: 228 HNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDG 287

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQIT 182
             +   ++ A++VL++M  A   PD+ T++ LI      +   + +    ++  AG   +
Sbjct: 288 LLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPS 347

Query: 183 KYVFMALINAYTTCGEFEKARQVVLD--AEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
              +  L +     G F++A + +LD  A       +   S++V  L   GR ++A+  +
Sbjct: 348 VVTYTTLCHGLCRSGRFDEAVE-ILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYF 406

Query: 241 EEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEV----HDPDY-----WMDGCC 289
           E++      + P  +   ALI+ L   G+++   + LE +      PD       ++G C
Sbjct: 407 EKMARDEV-VAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLC 465

Query: 290 RLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQ 349
                     ++ +  +L + + ++    +M       +  C+ +  D        DL Q
Sbjct: 466 DA-------GRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEA-----FDLFQ 513

Query: 350 FIKDELGLPPSR 361
            ++ + GL P R
Sbjct: 514 QMRSD-GLSPDR 524



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/319 (19%), Positives = 124/319 (38%), Gaps = 42/319 (13%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           I P   +Y  LI       +V  A D+ E+       P+  T N+++   C+     N +
Sbjct: 26  IYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENAL 85

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA---- 121
                M  H   +P   T+ ++I    +  + D    LL+++      P A  YN     
Sbjct: 86  TLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNA 145

Query: 122 -------------------------------IMAGYFRKKDVQGALMVLKE--MEQANVK 148
                                          I+ G  ++ +++ A  V+ E  M ++ + 
Sbjct: 146 LLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLS 205

Query: 149 PDSQTFSYLIHNCSNEEDIIKYYEQLKSA---GGQITKYVFMALINAYTTCGEFEKARQV 205
           PD  TF+ ++     E+ I+  +   K A   G +     +  LI+  +   + ++A Q+
Sbjct: 206 PDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQL 265

Query: 206 VLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
           +    E+  ++ +   S +V  L   GR  DA++V  ++++AGC  +      LI+    
Sbjct: 266 LAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFK 325

Query: 265 EGELNRLIQLLEEVHDPDY 283
              L   + LL E+ +  +
Sbjct: 326 RQRLREAVGLLREMLEAGF 344



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 76/371 (20%), Positives = 133/371 (35%), Gaps = 73/371 (19%)

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY---EQLKSAGGQI 181
           G  + + V  A+ + K+M    + PD  T+  LI     +  + + Y   E+ ++ G   
Sbjct: 4   GLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHP 63

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS-------------------- 221
           T   +  +I+    CG  E A  +  D  I    R  V +                    
Sbjct: 64  TVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKL 123

Query: 222 -----------------ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
                             LV+AL   GR+ +A  + E++   GC  E      +I+ L  
Sbjct: 124 LEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCK 183

Query: 265 EGELNRLIQLLEEVH------DPDYW-----MDGCCR----LILHCVRFKQLSSA----- 304
           EGE+    ++++E+        PD       +DG C+    L  H V  + L        
Sbjct: 184 EGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNV 243

Query: 305 ---TDLLKQLKDKFKDDE-MAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDEL----- 355
              + L+  L    K DE + +     E+ C+  T     V  GL  +  ++D +     
Sbjct: 244 VTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQ 303

Query: 356 ----GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGN 411
               G  P     + L+      + L+ A  + +E   AG   +V++Y  +      SG 
Sbjct: 304 MRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGR 363

Query: 412 RKSASKLLSKM 422
              A ++L  M
Sbjct: 364 FDEAVEILDYM 374


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 87/432 (20%), Positives = 177/432 (40%), Gaps = 24/432 (5%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELV--PSTETINSILHACEESYE 61
           +L   P   SY  L+   CD  K   A D++  M +G  V  P+    N+++    +  +
Sbjct: 178 ELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGD 237

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
            N    ++  +    + P+  T+ S++    K +  D A + L  +    ++P    YN 
Sbjct: 238 VNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNN 297

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAG 178
           ++ GY      + A+ V KEM + ++ PD  T S L+ +      I +    ++ +   G
Sbjct: 298 LIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKG 357

Query: 179 GQITKYVFMALINAYTTCG---EFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSD 235
                + +  ++N Y T G   +      ++L   I     +   + L+ A A+ G    
Sbjct: 358 QNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYT--FNVLIKAYANCGMLDK 415

Query: 236 AIIVYEEIKEAGCN---LEPRAVIALIEHLNS-EGELNRLIQLLEEVHDPDYWMDGCCRL 291
           A+I++ E+++ G     +  R VIA +  +   +  + +  Q++++   PD +   C  L
Sbjct: 416 AMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNC--L 473

Query: 292 ILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFI 351
           I        L  A +L+ ++ +     ++          C++      D Q   DL    
Sbjct: 474 IQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRV--MDAQNIFDLTV-- 529

Query: 352 KDELGLPPSRKCLDFLL-GACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASG 410
              +GL P     + L+ G C+  + +++A  ++    +AG+  NV+ Y  +   +   G
Sbjct: 530 --NVGLHPDAVVYNMLMDGYCLVGK-MEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIG 586

Query: 411 NRKSASKLLSKM 422
                  L  +M
Sbjct: 587 RIDEGLSLFREM 598



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/284 (19%), Positives = 121/284 (42%), Gaps = 18/284 (6%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           +  +I   C L +V  A ++ +  V   L P     N ++       +     R++  + 
Sbjct: 505 FSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMV 564

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
              ++PN   + ++++   KI   D   SL  ++ +  + P+  +Y+ I+ G F      
Sbjct: 565 SAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTV 624

Query: 134 GALMVLKEMEQANVKPDSQTFSYLI-----HNCSNEEDIIKYYEQLKSAGGQITKYVFMA 188
            A M   EM ++ +  D  T++ ++     + C +E   I  +++L++   +I       
Sbjct: 625 PAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEA--IFLFKELRAMNVKINIITLNT 682

Query: 189 LINAYTTCGEFEKARQVVLDAEIPVKSRSEVK------SALVSALASHGRTSDAIIVYEE 242
           +I+        E+A+   L A I   SRS +       S +++ L   G   +A  ++  
Sbjct: 683 MIDGMFQTRRVEEAKD--LFASI---SRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSS 737

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
           ++ AGC    R +  ++  L  + E+ R    L ++ + ++ ++
Sbjct: 738 MQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLE 781



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 77/175 (44%), Gaps = 3/175 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P+   Y  L+   C + ++   L +  +M+Q  + PST   + I+    E+      +
Sbjct: 568 IEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAK 627

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
             +  +    +  +  T+  ++    K + FD A  L  +L+ MN+       N ++ G 
Sbjct: 628 MKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGM 687

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAG 178
           F+ + V+ A  +   + ++ + P   T+S +I N   E   E+    +  +++AG
Sbjct: 688 FQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAG 742


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 126/280 (45%), Gaps = 10/280 (3%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQ--GELVPSTETINSILHACEESYEFNLVR 66
           P   SY  L+   CD  +   AL+++  M    G+  P   + +++++   +  + +   
Sbjct: 49  PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKTY 108

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
             Y  +    + PN  T+ S+I+   K +  D A  +L  + +  +MP    YN+I+ G+
Sbjct: 109 STYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGF 168

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI-HNCSNEE--DIIKYYEQLKSAGGQITK 183
                 + A++ LK+M    V+PD  T++ L+ + C N    +  K ++ +   G +   
Sbjct: 169 CSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEI 228

Query: 184 YVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             +  L+  Y T G   +   ++ L     +     V S LV A A   +  +A++V+ +
Sbjct: 229 TTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSK 288

Query: 243 IKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHD 280
           +++ G N  P AV   A+I  L   G +   +   E++ D
Sbjct: 289 MRQQGLN--PNAVTYGAVIGILCKSGRVEDAMLYFEQMID 326



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/209 (20%), Positives = 97/209 (46%), Gaps = 3/209 (1%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
            K  + P   +Y  ++   C   +   A+  +++M    + P   T NS++    ++   
Sbjct: 150 VKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRC 209

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
              R+I+  +    LKP   T+ +++            + LLD +    + P   +++ +
Sbjct: 210 TEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSIL 269

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGG 179
           +  Y +++ V+ A++V  +M Q  + P++ T+  +I         ED + Y+EQ+   G 
Sbjct: 270 VCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGL 329

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLD 208
                V+ +LI+   TC ++E+A +++L+
Sbjct: 330 SPGNIVYNSLIHGLCTCNKWERAEELILE 358



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/189 (20%), Positives = 77/189 (40%), Gaps = 35/189 (18%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA----------- 55
           + P++ +Y  +I   C   +V  A+   EQM+   L P     NS++H            
Sbjct: 294 LNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAE 353

Query: 56  -----------CEESYEFNLV-------------RRIYPMICHHNLKPNSETFRSMISLN 91
                      C  +  FN +              +++ ++    +KP+  T+ ++I   
Sbjct: 354 ELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 413

Query: 92  VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151
                 D A  LL  +  + + P    Y+ ++ GY +   ++ AL++ +EME + V PD 
Sbjct: 414 CLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDI 473

Query: 152 QTFSYLIHN 160
            T++ ++  
Sbjct: 474 ITYNIILQG 482


>gi|297849070|ref|XP_002892416.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338258|gb|EFH68675.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 459

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 119/266 (44%), Gaps = 44/266 (16%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS 86
           V  A+DV  ++   + V + +++N++++   ++ E    +  +       L+PNS +F  
Sbjct: 132 VDKAVDVFHKLTSFDCVRTIQSLNTLINVLVDNGELEKAKSFFDGAKDMRLRPNSVSFNI 191

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           +I   +   D+++A  + D++ EM + P+   YN+++    R  D+  A  +L++M +  
Sbjct: 192 LIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRNNDMGKATSLLEDMIKKR 251

Query: 147 VKPDSQTFSYLIHN-CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           ++P++ TF  L+   C N                                 GE+ +A+++
Sbjct: 252 IRPNAVTFGLLMKGLCCN---------------------------------GEYNEAKKL 278

Query: 206 VLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHL 262
           + D E        V    L+S L   G+  +A I+  E+K+    ++P  VI   L+ HL
Sbjct: 279 MFDMEYRGCKPGLVNYGVLMSDLGKRGKIDEAKILLGEMKKR--RIKPDFVIYNILVNHL 336

Query: 263 NSEGELNRLIQLLEEVHDPDYWMDGC 288
            +EG +    + L E+      M GC
Sbjct: 337 CTEGRVPEAYRTLTEMQ-----MKGC 357



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/244 (20%), Positives = 108/244 (44%), Gaps = 10/244 (4%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           + + P+S S+  LI    D      A  V ++M++ E+ PS  T NS++     + +   
Sbjct: 180 MRLRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRNNDMGK 239

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
              +   +    ++PN+ TF  ++       +++ A  L+ D++     P    Y  +M+
Sbjct: 240 ATSLLEDMIKKRIRPNAVTFGLLMKGLCCNGEYNEAKKLMFDMEYRGCKPGLVNYGVLMS 299

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQI 181
              ++  +  A ++L EM++  +KPD   ++ L+++   E  + + Y    +++  G + 
Sbjct: 300 DLGKRGKIDEAKILLGEMKKRRIKPDFVIYNILVNHLCTEGRVPEAYRTLTEMQMKGCKP 359

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSA----LVSALASHGRTSDAI 237
               +  +++ +   G+F+     VL+A +   SR     A    +VS L   G    A 
Sbjct: 360 NAATYRMIVDGFCRIGDFDSGLN-VLNAMLA--SRHSPTPATFVRMVSGLIKGGNLDHAC 416

Query: 238 IVYE 241
            V E
Sbjct: 417 FVLE 420



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 72/155 (46%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           ++E+ PS  +Y  LI + C    +  A  ++E M++  + P+  T   ++     + E+N
Sbjct: 214 EMEVQPSVVTYNSLIGFLCRNNDMGKATSLLEDMIKKRIRPNAVTFGLLMKGLCCNGEYN 273

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             +++   + +   KP    +  ++S   K    D A  LL ++K+  + P   +YN ++
Sbjct: 274 EAKKLMFDMEYRGCKPGLVNYGVLMSDLGKRGKIDEAKILLGEMKKRRIKPDFVIYNILV 333

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
                +  V  A   L EM+    KP++ T+  ++
Sbjct: 334 NHLCTEGRVPEAYRTLTEMQMKGCKPNAATYRMIV 368


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 117/271 (43%), Gaps = 31/271 (11%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           +P+  +Y ++I   C L     A+ V+  M+Q     +  T N+I+    +S       R
Sbjct: 422 SPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALR 481

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           I  ++     KP+  ++  +I    KI   +SA+ L +++ +  L P    Y A++ GY 
Sbjct: 482 ILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYC 541

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFM 187
           + + +  A  +L+ M+++  +P+ QT++ LIH  + + +     E  K     I + +F 
Sbjct: 542 KDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKV---MIEEGIFP 598

Query: 188 ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
            ++  YT                           A++  L  +G TS A+ ++ ++ E G
Sbjct: 599 NVVT-YT---------------------------AMIDGLCKNGSTSLALEMFNKMIEQG 630

Query: 248 CNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           C        +LI  L  EG++     L  E+
Sbjct: 631 CLPNLLTYSSLIRALGQEGKVEEAENLFAEL 661



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 99/460 (21%), Positives = 181/460 (39%), Gaps = 47/460 (10%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           E++P + +Y  +I   C    +  AL V  QM +    P+T T +++++   +S   N  
Sbjct: 245 EMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEA 304

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +   +  H + P + T    I     +  ++ A+ L  D+K     P    Y A+++G
Sbjct: 305 FDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISG 364

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY----YEQLKSAGGQI 181
                 ++ A+ +   M +  V P++ T++ LI N   E   IKY       +   G   
Sbjct: 365 LCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALI-NILVENRRIKYAFVVLNLMGRNGCSP 423

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVY 240
               +  +I  Y   G+ +KA  V+ +      S + V  + ++      G T+ A+ + 
Sbjct: 424 NIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRIL 483

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC-------RLIL 293
           + +++ GC  +  +   LI       ++     L  E+ D     DG C        LI 
Sbjct: 484 DLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVD-----DGLCPNEVTYTALID 538

Query: 294 HCVRFKQLSSATDLLKQLK---------------------DKFKDDE-----MAMEYHFS 327
              + ++L +AT LL+ +K                     + F   E     M  E  F 
Sbjct: 539 GYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFP 598

Query: 328 EIFCQIATTDP--PDVQIGLDLLQFIK-DELGLPPSRKCLDFLLGACVNARDLKRAHLIW 384
            +    A  D    +    L L  F K  E G  P+      L+ A      ++ A  ++
Sbjct: 599 NVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLF 658

Query: 385 KEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424
            E E  GL  + ++Y+ M +A++ SG  + A   L +M K
Sbjct: 659 AELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIK 698



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 80/189 (42%), Gaps = 3/189 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  LI   C   K+  A  ++E M +    P+ +T N ++H   +   F+   
Sbjct: 526 LCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAE 585

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +  ++    + PN  T+ +MI    K      A  + + + E   +P    Y++++   
Sbjct: 586 ELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRAL 645

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
            ++  V+ A  +  E+E+  + PD  T+  +I         E    +  ++  AG Q T 
Sbjct: 646 GQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTL 705

Query: 184 YVFMALINA 192
           + +  LI  
Sbjct: 706 WTYGVLIKG 714



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 86/454 (18%), Positives = 175/454 (38%), Gaps = 53/454 (11%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  L+ +   L      +D   +M+   + P+    N++++A  +         I   +
Sbjct: 182 AYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKV 241

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               + P++ T+ SMI  + +  D DSA  + + + +    P    Y+ ++ G      V
Sbjct: 242 FESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRV 301

Query: 133 QGALMVLKEMEQANVKPDSQTFSY-LIHNC--SNEEDIIKYYEQLKSAGGQITKYVFMAL 189
             A  +++EM    + P + T +  +I  C     ED  + +  +K+ G +   Y + AL
Sbjct: 302 NEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTAL 361

Query: 190 INAYTTCGEFEKA----RQVVLDAEIP------------VKSRSEVKSALVSALASHGRT 233
           I+     G  + A     ++  D   P            V++R    + +V  L      
Sbjct: 362 ISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGC 421

Query: 234 SDAIIVYEEIKEAGCNL-EPRAVIALIEHLNSEGELNRLI---QLLEEVHDP-------- 281
           S  I+ Y E+ +  C L +P+  + ++ ++   G    L+    +++   D         
Sbjct: 422 SPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALR 481

Query: 282 --DYWMDGCCR--------LILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEI-- 329
             D   DG C+        LI    +  ++ SA  L  ++ D   D     E  ++ +  
Sbjct: 482 ILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVD---DGLCPNEVTYTALID 538

Query: 330 -FCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYE 388
            +C+    D         LL+ +K   G  P+ +  + L+       +   A  + K   
Sbjct: 539 GYCKDEKLD-----TATSLLEHMKRS-GCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMI 592

Query: 389 NAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
             G+  NV++Y  M      +G+   A ++ +KM
Sbjct: 593 EEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKM 626


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/283 (22%), Positives = 132/283 (46%), Gaps = 14/283 (4%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEF 62
           +L +   + ++  ++ + C   K   AL+++ QM +    P+  T N+++   C      
Sbjct: 476 RLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCSRGRVQ 531

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDD-LKEMNLMPTASMYNA 121
             +  +  M     + PN  T+ ++IS   K+   D A  + D+ L +  + P A MYNA
Sbjct: 532 AALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNA 591

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQI 181
           ++ GY  +  +  AL+    M +  V     T++ L+H    +    + YE ++  GG+ 
Sbjct: 592 LIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKG 651

Query: 182 TK---YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAI 237
                + +  LIN +   G  +KA ++  + +   V++     +AL+ AL+  G+  +  
Sbjct: 652 LAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETD 711

Query: 238 IVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEV 278
            +++E    G  + P  V+  ALI   ++ G ++R  +++ E+
Sbjct: 712 KLFDEAVRRG--IRPDLVLYNALINSHSTSGNIDRAFEIMGEM 752



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 126/308 (40%), Gaps = 43/308 (13%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHAC---- 56
           M  K E+ P +  Y  LI   CD  K+  AL   ++MV+  +  +  T N ++HA     
Sbjct: 576 MLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDG 635

Query: 57  --EESYEF-------NLVRRIYP---MICHH----NLKPNSETFRSMISLNV-------- 92
              E+YE         L   ++    +I  H    N+K   E F +M    V        
Sbjct: 636 RGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYT 695

Query: 93  -------KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
                  K         L D+     + P   +YNA++  +    ++  A  ++ EME+ 
Sbjct: 696 ALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKK 755

Query: 146 NVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
            + PD  T++ L+         ++  K  +++   G Q     +  LI+ Y+  G+ + A
Sbjct: 756 RIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDA 815

Query: 203 RQVVLDAEIPVKSRSE---VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALI 259
            ++    E+  K  +      +AL+  L  +G+  DA  + +E+ E G   +    I+LI
Sbjct: 816 LRI--RNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLI 873

Query: 260 EHLNSEGE 267
           E L +E E
Sbjct: 874 EGLTTEDE 881



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/171 (21%), Positives = 73/171 (42%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P    Y  LI        +  A +++ +M +  + P   T N+++         +  R
Sbjct: 722 IRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEAR 781

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           ++   +    ++P+  T+ ++IS      D   A  + +++      PT   YNA++ G 
Sbjct: 782 KLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGL 841

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA 177
            +      A  ++KEM +  + PD  T+  LI   + E++     E+L +A
Sbjct: 842 CKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTEDERAIDDERLAAA 892


>gi|224115126|ref|XP_002332220.1| predicted protein [Populus trichocarpa]
 gi|222831877|gb|EEE70354.1| predicted protein [Populus trichocarpa]
          Length = 673

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 150/325 (46%), Gaps = 42/325 (12%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +I+   D  +  + L +  +M+   + P+  T+ S+L  C      +L  +++ + 
Sbjct: 149 SWTTIISACGDNGRAGMGLRLFIEMLFENVEPNDFTLTSVLSLCSTIQSSDLGMQVHSLS 208

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
                + N     S++ L +K    D A +L + ++  NL+     +NA++AG+ +  D+
Sbjct: 209 TKLGHESNLRITNSLVYLYLKCGCIDEAKNLFNRMEYKNLIT----WNAMIAGHAQAMDL 264

Query: 133 QG-----------ALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQI 181
                        AL +  ++ ++  KPD  T S ++  CS     +   EQ +    Q 
Sbjct: 265 AKDNFSAQQTGTEALGMYLKLNRSGRKPDLFTLSSILTVCSR----LAALEQGEQIHAQT 320

Query: 182 TKYVFM-------ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRT 233
            K  F+       AL++ Y  CG  E+AR+  LD    + +R+ +  ++++++ A HG++
Sbjct: 321 IKSGFLSDVVVGTALVDMYDKCGSIERARKAFLD----MSTRTLISWTSMITSFARHGQS 376

Query: 234 SDAIIVYEEIKEAGCNLEPR-----AVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD-- 286
             A+ ++E+++ AG    P       V+A   H     E     +++++ +     MD  
Sbjct: 377 QHALQLFEDMRLAG--FRPNQITFVGVLAACSHAGMVDEALEYFEIMQKEYKIKPVMDHY 434

Query: 287 GCCRLILHCVRFKQLSSATDLLKQL 311
           GC  L+   VR  +L  A D++K++
Sbjct: 435 GC--LVDMFVRLGRLDEAFDVIKRM 457



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 37/180 (20%), Positives = 76/180 (42%), Gaps = 7/180 (3%)

Query: 29  VALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
           VA++V   M++    PS  T++  L+AC       L ++ +  I  + +  +S    ++ 
Sbjct: 64  VAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSSIGNALC 123

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
           SL  K    DS+     +  E +++     +  I++           L +  EM   NV+
Sbjct: 124 SLYSKFGSLDSSVKAFRETGEKDVIS----WTTIISACGDNGRAGMGLRLFIEMLFENVE 179

Query: 149 PDSQTFSYLIHNCSN--EEDIIKYYEQLKSAGGQITKY-VFMALINAYTTCGEFEKARQV 205
           P+  T + ++  CS     D+      L +  G  +   +  +L+  Y  CG  ++A+ +
Sbjct: 180 PNDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAKNL 239


>gi|298709629|emb|CBJ31438.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 762

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/427 (20%), Positives = 181/427 (42%), Gaps = 39/427 (9%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQM-VQGELVPSTETINSILHACEESYEFN 63
           + ITP S  YK  +       +   A  ++++M +   +VP  ET    + A   +  + 
Sbjct: 250 VAITPESGCYKAAMQSCVRNKQWERATSLIDEMTLTYGMVPDLETYQVAISAAGCASLWP 309

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              ++   +  + L+P+ +T+ ++I+ + K K ++ +  LLDD++E+ + P    +NA +
Sbjct: 310 KATKMLRQMRQNGLQPDPKTYSAVITASGKAKKWEESLRLLDDMREVGVEPNCHNFNAAI 369

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQ 180
           A     +  Q A+ +L EM+   ++    +++  I  C+     ++      ++++AG +
Sbjct: 370 ASCGVARQWQRAVGLLGEMKGGGLELGLSSYNAAILACATSARGVEASALLGEMRAAGVE 429

Query: 181 ITKYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDA 236
                ++ +I A    G +E++    R++      P    S + +A+++A         A
Sbjct: 430 PNAATYLPVITACGKAGMWEQSLVHLREMTAQGLAP---NSPIYTAVITACGHAKEWEKA 486

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSE-GELNRLIQLLEEV---HDPDYWMDGCCRLI 292
           + +  E+  AG       V A + H N+     +R  Q    V   HD    MDG   + 
Sbjct: 487 LEILAEMPAAG-------VKASVYHYNTALDACDRAAQGEAAVVLLHD----MDGPPGVS 535

Query: 293 LHCVRFKQLSSA------TDLLKQLKDKFKD-----DEMAMEYHFSEIFCQIATTDPPDV 341
            +   ++   SA       DL  +L ++ K       E+A          Q   + PPD 
Sbjct: 536 PNPSSYQSAMSACGSEGRVDLALELLEEVKAASTTRPELAPSSKLYASALQACVSSPPDG 595

Query: 342 QIGLDLLQFIKDE--LGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSY 399
                  + +++    G+  + +  +  + A   A ++  A     E ++AGL  NV+SY
Sbjct: 596 SNARKAKELLEEARGAGIALNWRSYNCAIIAAAKAGEVDEALARLAEMKDAGLTPNVMSY 655

Query: 400 LWMYKAF 406
            W+  A 
Sbjct: 656 SWILPAL 662



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 43/216 (19%), Positives = 91/216 (42%), Gaps = 39/216 (18%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQM-----VQGELVPSTETINSILHA 55
           M     ++P+ +SY+  ++      +V +AL+++E++      + EL PS++   S L A
Sbjct: 528 MDGPPGVSPNPSSYQSAMSACGSEGRVDLALELLEEVKAASTTRPELAPSSKLYASALQA 587

Query: 56  CEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPT 115
           C  S                   P+    R              A  LL++ +   +   
Sbjct: 588 CVSS------------------PPDGSNARK-------------AKELLEEARGAGIALN 616

Query: 116 ASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYE 172
              YN  +    +  +V  AL  L EM+ A + P+  ++S+++   ++    E+ +   E
Sbjct: 617 WRSYNCAIIAAAKAGEVDEALARLAEMKDAGLTPNVMSYSWILPALASRELWEESLALVE 676

Query: 173 QLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
           ++K  G   T + +  ++ A++  G +E+   V+ D
Sbjct: 677 EIKGYGLLRTPFAYSVVVAAHSAAGRWEEVCGVLED 712



 Score = 45.4 bits (106), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 73/340 (21%), Positives = 142/340 (41%), Gaps = 60/340 (17%)

Query: 127 FRKKDVQGALMVLKEMEQA-NVKP-DSQTFSYLIHNCSNE-------EDIIKYYEQLKSA 177
            R  D +G L  L+  E+A + +P +S+  +++  +C +        E+ +   +++++ 
Sbjct: 1   MRPTDWRGVLRELQIAEEASDAQPSESRITTFMYASCISRMAKARRWEEALDILQRMRAR 60

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVV---------LDAEIPVKSRSEVKSALVSALA 228
           G Q   Y   + I A   CG  ++ R+ +         L    PV   S   SA + A  
Sbjct: 61  GLQPNSYCVSSAIKA---CGSKKRWREALELLERRREDLGEGSPVDEYS--LSAAIYACG 115

Query: 229 SHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC 288
           + G T   + + EE+K  G    P +  A I      G  ++++QL E++       DG 
Sbjct: 116 NSGETGKVLELLEELKVGGKTPHPFSYTAAISACGDSGMGDKVMQLFEDMRQARVRTDGF 175

Query: 289 CRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLL 348
             + ++CV+    ++ T L K  K K      A++ +   +    A +D P+  + LD L
Sbjct: 176 --IDVYCVK----TTITALAKSGKWK-----QALKIYLEMLDALPANSDAPEANLNLDAL 224

Query: 349 Q----------------FIKDEL---GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYEN 389
           +                 + DE+    + P   C    + +CV  +  +RA  +  E   
Sbjct: 225 RDASLACGRAGDWKASLKLLDEMRAVAITPESGCYKAAMQSCVRNKQWERATSLIDEMT- 283

Query: 390 AGLPYNVLSYLWMYKAFLASGNRKS----ASKLLSKMPKD 425
             L Y ++  L  Y+  +++    S    A+K+L +M ++
Sbjct: 284 --LTYGMVPDLETYQVAISAAGCASLWPKATKMLRQMRQN 321



 Score = 44.7 bits (104), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 59/288 (20%), Positives = 121/288 (42%), Gaps = 18/288 (6%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P++A+Y  +IT          +L  + +M    L P++    +++ AC  + E+    
Sbjct: 428 VEPNAATYLPVITACGKAGMWEQSLVHLREMTAQGLAPNSPIYTAVITACGHAKEWEKAL 487

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL-KEMNLMPTASMYNAIMAG 125
            I   +    +K +   + + +    +    ++A  LL D+     + P  S Y + M+ 
Sbjct: 488 EILAEMPAAGVKASVYHYNTALDACDRAAQGEAAVVLLHDMDGPPGVSPNPSSYQSAMSA 547

Query: 126 YFRKKDVQGALMVLKEMEQAN-----VKPDSQTFSYLIHNC-------SNEEDIIKYYEQ 173
              +  V  AL +L+E++ A+     + P S+ ++  +  C       SN     +  E+
Sbjct: 548 CGSEGRVDLALELLEEVKAASTTRPELAPSSKLYASALQACVSSPPDGSNARKAKELLEE 607

Query: 174 LKSAGGQITKYVFMALINAYTTCGEFEKARQVVL---DAEIPVKSRSEVKSALVSALASH 230
            + AG  +    +   I A    GE ++A   +    DA +     S   S ++ ALAS 
Sbjct: 608 ARGAGIALNWRSYNCAIIAAAKAGEVDEALARLAEMKDAGLTPNVMS--YSWILPALASR 665

Query: 231 GRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
               +++ + EEIK  G    P A   ++   ++ G    +  +LE++
Sbjct: 666 ELWEESLALVEEIKGYGLLRTPFAYSVVVAAHSAAGRWEEVCGVLEDM 713


>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 606

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 138/301 (45%), Gaps = 31/301 (10%)

Query: 16  KLITYSCD-----LLKVHVALDV---VEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           KL   SC      LLK + + DV    ++M++ ++ P+  T N +++A  ++ + N  R 
Sbjct: 185 KLSAMSCKPLMVALLKQNRSADVEYLYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARD 244

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAY---SLLDDLKEMNLMPTASMYNAIMA 124
           +   +  +   PN  ++ ++I    K+      Y   ++L ++ E  + P  + +N ++ 
Sbjct: 245 VMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENEVSPNLTTFNILID 304

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQI 181
           G+++  ++ G+L V KEM   +V P+  T++ LI+   N   I   I   +++ SAG Q 
Sbjct: 305 GFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQP 364

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSR-----SEVKSALVSALASHGRTSDA 236
               + +LIN +   G  ++A    LD    VK +     + + + L+ A    G+  D 
Sbjct: 365 NLITYHSLINGFCKNGMMKEA----LDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDG 420

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD---PDY-----WMDGC 288
             + EE++  G   +      LI  L   G +    +L +++ +   PD       M+G 
Sbjct: 421 FALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGLPDLVTFHILMEGY 480

Query: 289 C 289
           C
Sbjct: 481 C 481



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 124/278 (44%), Gaps = 6/278 (2%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           E++P+  ++  LI        +  +L V ++M+  +++P+  T NS+++      + N  
Sbjct: 291 EVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEA 350

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +   +    ++PN  T+ S+I+   K      A  + D +K     PT  MYN ++  
Sbjct: 351 IGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDA 410

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQIT 182
           Y +   +     + +EME+  + PD  T++ LI   C N   E   K ++QL +  G   
Sbjct: 411 YCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNK-GLPD 469

Query: 183 KYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
              F  L+  Y + GE  KA  ++ + +++ +K R    + ++      G    A  +  
Sbjct: 470 LVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRT 529

Query: 242 EI-KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           ++ KE    +   +   L++  + +G+L     LL E+
Sbjct: 530 QMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEM 567



 Score = 38.9 bits (89), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 2/149 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P   +Y  LI   C    +  A  + +Q+    L P   T + ++       E     
Sbjct: 432 IVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGL-PDLVTFHILMEGYCSRGESRKAA 490

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL-KEMNLMPTASMYNAIMAG 125
            +   +    LKP   T+  M+    K  +  +A ++   + KE  L    + YN ++ G
Sbjct: 491 MLLKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQG 550

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTF 154
           Y +K  ++ A M+L EM +  + P+  T+
Sbjct: 551 YSQKGKLEDANMLLNEMLEKGLVPNRITY 579


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 117/271 (43%), Gaps = 31/271 (11%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           +P+  +Y ++I   C L     A+ V+  M+Q     +  T N+I+    +S       R
Sbjct: 422 SPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALR 481

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           I  ++     KP+  ++  +I    KI   +SA+ L +++ +  L P    Y A++ GY 
Sbjct: 482 ILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYC 541

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFM 187
           + + +  A  +L+ M+++  +P+ QT++ LIH  + + +     E  K     I + +F 
Sbjct: 542 KDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKV---MIEEGIFP 598

Query: 188 ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
            ++  YT                           A++  L  +G TS A+ ++ ++ E G
Sbjct: 599 NVVT-YT---------------------------AMIDGLCKNGSTSLALEMFNKMIEQG 630

Query: 248 CNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           C        +LI  L  EG++     L  E+
Sbjct: 631 CLPNLLTYSSLIRALGQEGKVEEAENLFAEL 661



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 99/460 (21%), Positives = 181/460 (39%), Gaps = 47/460 (10%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           E++P + +Y  +I   C    +  AL V  QM +    P+T T +++++   +S   N  
Sbjct: 245 EMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEA 304

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +   +  H + P + T    I     +  ++ A+ L  D+K     P    Y A+++G
Sbjct: 305 FDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISG 364

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY----YEQLKSAGGQI 181
                 ++ A+ +   M +  V P++ T++ LI N   E   IKY       +   G   
Sbjct: 365 LCVSGILKVAIGLFHRMSRDGVFPNTVTYNALI-NILVENRRIKYAFVVLNLMGRNGCSP 423

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVY 240
               +  +I  Y   G+ +KA  V+ +      S + V  + ++      G T+ A+ + 
Sbjct: 424 NIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRIL 483

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC-------RLIL 293
           + +++ GC  +  +   LI       ++     L  E+ D     DG C        LI 
Sbjct: 484 DLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVD-----DGLCPNEVTYTALID 538

Query: 294 HCVRFKQLSSATDLLKQLK---------------------DKFKDDE-----MAMEYHFS 327
              + ++L +AT LL+ +K                     + F   E     M  E  F 
Sbjct: 539 GYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFP 598

Query: 328 EIFCQIATTDP--PDVQIGLDLLQFIK-DELGLPPSRKCLDFLLGACVNARDLKRAHLIW 384
            +    A  D    +    L L  F K  E G  P+      L+ A      ++ A  ++
Sbjct: 599 NVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLF 658

Query: 385 KEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424
            E E  GL  + ++Y+ M +A++ SG  + A   L +M K
Sbjct: 659 AELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIK 698



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 80/189 (42%), Gaps = 3/189 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  LI   C   K+  A  ++E M +    P+ +T N ++H   +   F+   
Sbjct: 526 LCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAE 585

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +  ++    + PN  T+ +MI    K      A  + + + E   +P    Y++++   
Sbjct: 586 ELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRAL 645

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
            ++  V+ A  +  E+E+  + PD  T+  +I         E    +  ++  AG Q T 
Sbjct: 646 GQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTL 705

Query: 184 YVFMALINA 192
           + +  LI  
Sbjct: 706 WTYGVLIKG 714



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 86/454 (18%), Positives = 175/454 (38%), Gaps = 53/454 (11%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  L+ +   L      +D   +M+   + P+    N++++A  +         I   +
Sbjct: 182 AYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKV 241

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               + P++ T+ SMI  + +  D DSA  + + + +    P    Y+ ++ G      V
Sbjct: 242 FESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRV 301

Query: 133 QGALMVLKEMEQANVKPDSQTFSY-LIHNCSNE--EDIIKYYEQLKSAGGQITKYVFMAL 189
             A  +++EM    + P + T +  +I  C     ED  + +  +K+ G +   Y + AL
Sbjct: 302 NEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTAL 361

Query: 190 INAYTTCGEFEKA----RQVVLDAEIP------------VKSRSEVKSALVSALASHGRT 233
           I+     G  + A     ++  D   P            V++R    + +V  L      
Sbjct: 362 ISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGC 421

Query: 234 SDAIIVYEEIKEAGCNL-EPRAVIALIEHLNSEGELNRLI---QLLEEVHDP-------- 281
           S  I+ Y E+ +  C L +P+  + ++ ++   G    L+    +++   D         
Sbjct: 422 SPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALR 481

Query: 282 --DYWMDGCCR--------LILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEI-- 329
             D   DG C+        LI    +  ++ SA  L  ++ D   D     E  ++ +  
Sbjct: 482 ILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVD---DGLCPNEVTYTALID 538

Query: 330 -FCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYE 388
            +C+    D         LL+ +K   G  P+ +  + L+       +   A  + K   
Sbjct: 539 GYCKDEKLD-----TATSLLEHMKRS-GCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMI 592

Query: 389 NAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
             G+  NV++Y  M      +G+   A ++ +KM
Sbjct: 593 EEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKM 626


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 111/244 (45%), Gaps = 12/244 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           ALD+   M+   ++P+  T +S L AC       +  +++           +    S+IS
Sbjct: 360 ALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLIS 419

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  +    D A    D L E NL+     YN ++  Y +  + + AL +  E+E   +  
Sbjct: 420 MYARSGRIDDARKAFDILFEKNLIS----YNTVIDAYAKNLNSEEALELFNEIEDQGMGA 475

Query: 150 DSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
            + TF+ L+   ++   I K    + ++  +G ++ + V  ALI+ Y+ CG  E A QV 
Sbjct: 476 SAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVF 535

Query: 207 LDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
            D E     R+ +  +++++  A HG  + A+ ++ ++ E G        IA++   +  
Sbjct: 536 EDME----DRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHV 591

Query: 266 GELN 269
           G +N
Sbjct: 592 GLVN 595



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 42/223 (18%), Positives = 97/223 (43%), Gaps = 10/223 (4%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           SY  +I      L    AL++  ++    +  S  T  S+L             +I+  +
Sbjct: 444 SYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARV 503

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               LK N     ++IS+  +  + +SA+ + +D+++ N++     + +I+ G+ +    
Sbjct: 504 IKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVIS----WTSIITGFAKHGFA 559

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLKSAGGQITKYV-FMA 188
             AL +  +M +  V+P+  T+  ++  CS+     +  K+++ + +  G I +   +  
Sbjct: 560 TQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYAC 619

Query: 189 LINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHG 231
           +++     G   +A Q +    +P K+ + V    + A   HG
Sbjct: 620 MVDILGRSGSLSEAIQFI--NSMPYKADALVWRTFLGACRVHG 660



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 85/426 (19%), Positives = 173/426 (40%), Gaps = 41/426 (9%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+D+  +M+     P   T++ ++ AC       L ++++     H L  +      +I+
Sbjct: 255 AIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLIN 314

Query: 90  LNVKIK---DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV-QGALMVLKEMEQA 145
           +  K        +A  + D + + N+      + A++ GY +K    + AL + + M   
Sbjct: 315 MYAKCSVDGSMCAARKIFDQILDHNVFS----WTAMITGYVQKGGYDEEALDLFRGMILT 370

Query: 146 NVKPDSQTFSYLIHNCSN------EEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEF 199
           +V P+  TFS  +  C+N       E +  +  +L   G      V  +LI+ Y   G  
Sbjct: 371 HVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKL---GFSSVNCVANSLISMYARSGRI 427

Query: 200 EKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALI 259
           + AR+     +I  +      + ++ A A +  + +A+ ++ EI++ G         +L+
Sbjct: 428 DDARKAF---DILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLL 484

Query: 260 EHLNSEGELNRLIQLLEEVHDPDYWMDG--CCRLILHCVRFKQLSSATDLLKQLKDKFKD 317
               S G + +  Q+   V      ++   C  LI    R   + SA  + + ++D+   
Sbjct: 485 SGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVI 544

Query: 318 DEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDL 377
              ++   F++     AT         L+L   + +E G+ P+      +L AC +   +
Sbjct: 545 SWTSIITGFAKH--GFATQ-------ALELFHKMLEE-GVRPNLVTYIAVLSACSHVGLV 594

Query: 378 KRAHLIWKEYENAGLPYNVL----SYLWMYKAFLASGNRKSASKLLSKMP-KDDPHV-RF 431
                 WK +++    + V+     Y  M      SG+   A + ++ MP K D  V R 
Sbjct: 595 NEG---WKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRT 651

Query: 432 VIQACK 437
            + AC+
Sbjct: 652 FLGACR 657



 Score = 42.4 bits (98), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 7/117 (5%)

Query: 135 ALMVLKEMEQANVKPDSQTFSYLIHNC--SNEEDI-IKYYEQLKSAGGQITKYVFMALIN 191
           A+  L+ M      PD QT+S  +  C  +   DI    +E+L  +  Q+      +LI+
Sbjct: 50  AISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLIS 109

Query: 192 AYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAG 247
            Y+ CG++EKA  +    ++   SR  +  SA+VS  A++     A++ + ++ E G
Sbjct: 110 LYSKCGQWEKATSIF---QLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENG 163


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 117/271 (43%), Gaps = 31/271 (11%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           +P+  +Y ++I   C L     A+ V+  M+Q     +  T N+I+    +S       R
Sbjct: 422 SPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALR 481

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           I  ++     KP+  ++  +I    KI   +SA+ L +++ +  L P    Y A++ GY 
Sbjct: 482 ILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYC 541

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFM 187
           + + +  A  +L+ M+++  +P+ QT++ LIH  + + +     E  K     I + +F 
Sbjct: 542 KDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKV---MIEEGIFP 598

Query: 188 ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
            ++  YT                           A++  L  +G TS A+ ++ ++ E G
Sbjct: 599 NVVT-YT---------------------------AMIDGLCKNGSTSLALEMFNKMIEQG 630

Query: 248 CNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           C        +LI  L  EG++     L  E+
Sbjct: 631 CLPNLLTYSSLIRALGQEGKVEEAENLFAEL 661



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 99/460 (21%), Positives = 181/460 (39%), Gaps = 47/460 (10%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           E++P + +Y  +I   C    +  AL V  QM +    P+T T +++++   +S   N  
Sbjct: 245 EMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEA 304

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +   +  H + P + T    I     +  ++ A+ L  D+K     P    Y A+++G
Sbjct: 305 FDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISG 364

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY----YEQLKSAGGQI 181
                 ++ A+ +   M +  V P++ T++ LI N   E   IKY       +   G   
Sbjct: 365 LCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALI-NILVENRRIKYAFVVLNLMGRNGCSP 423

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVY 240
               +  +I  Y   G+ +KA  V+ +      S + V  + ++      G T+ A+ + 
Sbjct: 424 NIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRIL 483

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC-------RLIL 293
           + +++ GC  +  +   LI       ++     L  E+ D     DG C        LI 
Sbjct: 484 DLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVD-----DGLCPNEVTYTALID 538

Query: 294 HCVRFKQLSSATDLLKQLK---------------------DKFKDDE-----MAMEYHFS 327
              + ++L +AT LL+ +K                     + F   E     M  E  F 
Sbjct: 539 GYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFP 598

Query: 328 EIFCQIATTDP--PDVQIGLDLLQFIK-DELGLPPSRKCLDFLLGACVNARDLKRAHLIW 384
            +    A  D    +    L L  F K  E G  P+      L+ A      ++ A  ++
Sbjct: 599 NVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLF 658

Query: 385 KEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424
            E E  GL  + ++Y+ M +A++ SG  + A   L +M K
Sbjct: 659 AELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIK 698



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 80/189 (42%), Gaps = 3/189 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  LI   C   K+  A  ++E M +    P+ +T N ++H   +   F+   
Sbjct: 526 LCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAE 585

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +  ++    + PN  T+ +MI    K      A  + + + E   +P    Y++++   
Sbjct: 586 ELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRAL 645

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
            ++  V+ A  +  E+E+  + PD  T+  +I         E    +  ++  AG Q T 
Sbjct: 646 GQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTL 705

Query: 184 YVFMALINA 192
           + +  LI  
Sbjct: 706 WTYGVLIKG 714



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 86/454 (18%), Positives = 175/454 (38%), Gaps = 53/454 (11%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  L+ +   L      +D   +M+   + P+    N++++A  +         I   +
Sbjct: 182 AYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKV 241

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               + P++ T+ SMI  + +  D DSA  + + + +    P    Y+ ++ G      V
Sbjct: 242 FESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRV 301

Query: 133 QGALMVLKEMEQANVKPDSQTFSY-LIHNCSNE--EDIIKYYEQLKSAGGQITKYVFMAL 189
             A  +++EM    + P + T +  +I  C     ED  + +  +K+ G +   Y + AL
Sbjct: 302 NEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTAL 361

Query: 190 INAYTTCGEFEKA----RQVVLDAEIP------------VKSRSEVKSALVSALASHGRT 233
           I+     G  + A     ++  D   P            V++R    + +V  L      
Sbjct: 362 ISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGC 421

Query: 234 SDAIIVYEEIKEAGCNL-EPRAVIALIEHLNSEGELNRLI---QLLEEVHDP-------- 281
           S  I+ Y E+ +  C L +P+  + ++ ++   G    L+    +++   D         
Sbjct: 422 SPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALR 481

Query: 282 --DYWMDGCCR--------LILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEI-- 329
             D   DG C+        LI    +  ++ SA  L  ++ D   D     E  ++ +  
Sbjct: 482 ILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVD---DGLCPNEVTYTALID 538

Query: 330 -FCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYE 388
            +C+    D         LL+ +K   G  P+ +  + L+       +   A  + K   
Sbjct: 539 GYCKDEKLD-----TATSLLEHMKRS-GCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMI 592

Query: 389 NAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
             G+  NV++Y  M      +G+   A ++ +KM
Sbjct: 593 EEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKM 626


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 94/185 (50%), Gaps = 14/185 (7%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
            L PN     ++IS+  K    D A +  ++L+  N    +  +NA+M  Y      + A
Sbjct: 61  GLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKN----SVTWNAMMTNYKLDGRDREA 116

Query: 136 LMVLKEM--EQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFM--A 188
           L + +EM     + +PD  +FS  I  CSN ED+ +    +E L+  G ++ K V +  A
Sbjct: 117 LELFREMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTA 176

Query: 189 LINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC 248
           L+N Y+ CG+ E+AR+V     I   + S   +A+++A A HGR   A+ +Y  + +   
Sbjct: 177 LLNMYSKCGDLEEARKVF--DSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDT-T 233

Query: 249 NLEPR 253
           +L P+
Sbjct: 234 DLAPK 238



 Score = 45.4 bits (106), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 93/221 (42%), Gaps = 19/221 (8%)

Query: 30  ALDVVEQMVQG-ELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
           ALD+   M    +L P   T  +++  C E       R I+  +   N   N     +++
Sbjct: 222 ALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALV 281

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
            +  K    D A   LD    M L    S +N I++ Y        AL++ +EM+   VK
Sbjct: 282 HMYGKCGCLDEA---LDVFHSMKLKDEIS-WNTIISSYAYHGHSDQALLLYQEMDLQGVK 337

Query: 149 PDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYV--FMALINAYTTCGEFEKAR 203
           P   TF  L+  CS+     D + Y+ +++    +I   V  F  +I+     G   +A 
Sbjct: 338 PTEVTFVGLLSACSHGGLVADGLDYFYRMQD-DHRIKPSVPHFGCIIDLLGRGGRLAEAE 396

Query: 204 QVVLDAEIPVKSRSEVKSALVSALASHG------RTSDAII 238
            V+    +P+++ +    +L+ A  +HG      R +D ++
Sbjct: 397 LVL--KSMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVV 435



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 45/230 (19%), Positives = 99/230 (43%), Gaps = 14/230 (6%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV--KIKDFDSAY 101
           P   + +  + AC    +    R I+ M+     + + +       LN+  K  D + A 
Sbjct: 132 PDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMYSKCGDLEEAR 191

Query: 102 SLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM-EQANVKPDSQTFSYLIHN 160
            + D ++       +  +NA++A Y +    + AL + + M +  ++ P   TF  +I  
Sbjct: 192 KVFDSIRHD---ADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDV 248

Query: 161 CSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRS 217
           C+    + +    + ++++        V  AL++ Y  CG  ++A    LD    +K + 
Sbjct: 249 CAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEA----LDVFHSMKLKD 304

Query: 218 EVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
           E+  + ++S+ A HG +  A+++Y+E+   G        + L+   +  G
Sbjct: 305 EISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGG 354


>gi|347954532|gb|AEP33766.1| organelle transcript processing 82, partial [Lepidium virginicum]
          Length = 464

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/262 (20%), Positives = 121/262 (46%), Gaps = 12/262 (4%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +I+   +      AL++ ++MV+  + P   T+ +++ AC +S    L R+++ +I
Sbjct: 172 SWNAMISGYVETFNYKEALELYKEMVKTNVKPDESTMVTVVSACAQSSNIELGRQVHSLI 231

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
             H    N +   +++ +  K  + ++A  L   L   +    A  +N ++ G+      
Sbjct: 232 EDHGFGSNLKVVNALMDMYSKCGEMETACRLFQGLVNKD----AISWNTLIGGHTHMNLY 287

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI-----IKYYEQLKSAGGQITKYVFM 187
           + AL + +EM ++   P+  T   ++  C++   I     I  Y   +  G   +  +  
Sbjct: 288 KEALFLFQEMLRSGESPNDVTMLSVLSACAHLGAIDIGRWIHVYIDKRLKGVTNSSSLRT 347

Query: 188 ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           +LI+ Y  CG+ E A Q V D+ +     S   +A++   A HG+ + A  ++ +++++G
Sbjct: 348 SLIDMYAKCGDIEAASQ-VFDSMLARSLSSW--NAMIFGFAMHGKANAAFDLFSKMRKSG 404

Query: 248 CNLEPRAVIALIEHLNSEGELN 269
              +    + L+   +  G L+
Sbjct: 405 IEPDDITFVGLLSACSHSGMLD 426



 Score = 43.1 bits (100), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 22/153 (14%)

Query: 100 AYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159
           A S+ + ++E NL+    ++N +  G+    D   AL +   M    + P+S +F +L+ 
Sbjct: 26  AISVFETIEEPNLL----IWNTMFRGHALNSDSVSALKLYVCMISLGLLPNSYSFPFLLK 81

Query: 160 NCSNEEDIIKYYEQLKSAGGQITK-------YVFMALINAYTTCGEFEKARQVVLDAEIP 212
           +C+      K + + +   G + K       YV  +LI+ Y   G  E A +V       
Sbjct: 82  SCAKS----KAFREGQQIHGHVVKLGYDLDMYVHTSLISMYAQNGRLEDAHKV-----FD 132

Query: 213 VKSRSEVKS--ALVSALASHGRTSDAIIVYEEI 243
             S   V S  AL++  AS G T  A  +++EI
Sbjct: 133 RSSHRHVVSYTALITGYASRGYTKSARKLFDEI 165


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 92/197 (46%), Gaps = 4/197 (2%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +I  +    K++ A ++ EQM+Q  + P+  T  S+L++C      N  RRI+  I
Sbjct: 225 SWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHI 284

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA-IMAGYFRKKD 131
               L+ +     ++I++  K      A  + D + + +++  ++M      +GY  K+ 
Sbjct: 285 SERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKES 344

Query: 132 VQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMA 188
           +     +L+ M +  V P+  TF  ++  C+     E   + + +L   G ++ + +  A
Sbjct: 345 IDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTA 404

Query: 189 LINAYTTCGEFEKARQV 205
           + N Y  CG   +A QV
Sbjct: 405 IFNMYAKCGSIYEAEQV 421



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 99/498 (19%), Positives = 206/498 (41%), Gaps = 64/498 (12%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+S S  ++    C   ++  A+ ++  + Q  L+ ++ T   ++  C ++  F   + +
Sbjct: 20  PTSVSGGEVWRL-CKAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMV 78

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    ++ +     S+I+   K +D  SA  +    + M L    + +++++A Y  
Sbjct: 79  HKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVF---RRMTLRDVVT-WSSMIAAYAG 134

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYV 185
                 A    + M  AN++P+  TF  ++  C+N    E   K +  +K+ G +    V
Sbjct: 135 NNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAV 194

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIK 244
             ALI  Y+ CGE   A +V       +  R+ V  +A++ A A H + ++A  +YE++ 
Sbjct: 195 ATALITMYSKCGEISVACEVFH----KMTERNVVSWTAIIQANAQHRKLNEAFELYEQML 250

Query: 245 EAGCNLEPRAV--IALIEHLNSEGELNRLIQLLEEVHDPDYWMD---GCCRLILHCVRFK 299
           +AG  + P AV  ++L+   N+   LNR  ++   + +     D       + ++C +  
Sbjct: 251 QAG--ISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYC-KCN 307

Query: 300 QLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPP 359
            +  A ++  ++    K D ++     +  + Q    D   +     LL+ ++ E G+ P
Sbjct: 308 SVQEAREIFDRMS---KRDVISWSAMIAG-YAQSGYKDKESIDEVFQLLERMRRE-GVFP 362

Query: 360 SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPY------------------------- 394
           ++     +L AC     L++   I  E    G                            
Sbjct: 363 NKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVF 422

Query: 395 ------NVLSYLWMYKAFLASGNRKSASKLLSKMP-KDDPHVRFVIQACKQT------YT 441
                 NV+++      ++  G+  SA K+ S+MP ++      +I    Q       + 
Sbjct: 423 SKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFE 482

Query: 442 IPSLQKERGFEKDRDTLL 459
           + S  K  GF+ DR T++
Sbjct: 483 LLSSMKAEGFQPDRVTVI 500



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 78/169 (46%), Gaps = 14/169 (8%)

Query: 80  NSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVL 139
           N   + S +S+ +K  D  SA  +  ++   N++     +N ++AGY +  D+     +L
Sbjct: 429 NVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVS----WNLMIAGYAQNGDIVKVFELL 484

Query: 140 KEMEQANVKPDSQTFSYLIHNCSN----EEDIIKYYEQLKSAGGQITKYVFMALINAYTT 195
             M+    +PD  T   ++  C      E   + + E +K  G +    V  +LI  Y+ 
Sbjct: 485 SSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVK-LGLESDTVVATSLIGMYSK 543

Query: 196 CGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEI 243
           CG+  +AR  V D    + +R  V  +A+++    HG   +A+ +++ +
Sbjct: 544 CGQVAEAR-TVFD---KMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRM 588



 Score = 40.0 bits (92), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 61/140 (43%), Gaps = 7/140 (5%)

Query: 23  DLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSE 82
           D++KV    +++  M      P   T+ +IL AC         + ++       L+ ++ 
Sbjct: 476 DIVKV---FELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTV 532

Query: 83  TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM 142
              S+I +  K      A ++ D +   + +     +NA++AGY +  D   A+ + K M
Sbjct: 533 VATSLIGMYSKCGQVAEARTVFDKMSNRDTVA----WNAMLAGYGQHGDGLEAVDLFKRM 588

Query: 143 EQANVKPDSQTFSYLIHNCS 162
            +  V P+  T + +I  CS
Sbjct: 589 LKERVSPNEITLTAVISACS 608


>gi|3107905|dbj|BAA25906.1| leaf protein [Ipomoea nil]
          Length = 665

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 125/290 (43%), Gaps = 17/290 (5%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M  +  I P   +Y  L+   C+   +  A  VV +MV   L P   T N+I  A     
Sbjct: 199 MSREENIKPDDRTYNILVQAWCNKNNIEKAWGVVHRMVGAGLKPDVVTYNTIARAYARGK 258

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           E +    +   + ++ + PN  T   ++    K  +   A   +  ++   + P   ++N
Sbjct: 259 ETSRAAELISQMQNNKVAPNVRTCGIVVDGYSKEGNMADALKFIYKMQGFGVHPNLFIFN 318

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSA 177
           +++ G+    D +G    L  M++  VKPD  T+S +++  S+    E   + ++ +  +
Sbjct: 319 SLLKGFLDITDTKGVDETLTLMQEFGVKPDVVTYSTIMNAWSSAGLMEKCEEMFQDMIKS 378

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK--SALVSALASHGRTSD 235
           G +   + F  L   Y   GE +KA + +L+A     +   V   + ++S   S  +  D
Sbjct: 379 GIEPDNHAFSILAKGYVRAGEPKKA-EALLEAMATHGAHPNVVMFTTIISGWCSAAKMED 437

Query: 236 AIIVYEEIKEAGCNLEPRAVIALIEHL-------NSEGELNRLIQLLEEV 278
           A+ VY+ +    C ++ +  +   E L       N   +   L+Q++EE+
Sbjct: 438 ALRVYDRM----CRMDVQPNLNTFETLIWGYGEANEPWKAEELLQIMEEM 483



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/280 (20%), Positives = 117/280 (41%), Gaps = 15/280 (5%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINS------ILHACEESY 60
           + P S  +  +I   C+   V  A+ +  +M +    P+  T N+      I+   EES 
Sbjct: 134 LRPDSIFFNPMINAFCESGNVKEAMKIFRKMREKGCKPTASTFNALIKGFGIIGKPEESS 193

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           +      +  M    N+KP+  T+  ++       + + A+ ++  +    L P    YN
Sbjct: 194 KL-----LEIMSREENIKPDDRTYNILVQAWCNKNNIEKAWGVVHRMVGAGLKPDVVTYN 248

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSA 177
            I   Y R K+   A  ++ +M+   V P+ +T   ++   S E    D +K+  +++  
Sbjct: 249 TIARAYARGKETSRAAELISQMQNNKVAPNVRTCGIVVDGYSKEGNMADALKFIYKMQGF 308

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQ-VVLDAEIPVKSRSEVKSALVSALASHGRTSDA 236
           G     ++F +L+  +    + +   + + L  E  VK      S +++A +S G     
Sbjct: 309 GVHPNLFIFNSLLKGFLDITDTKGVDETLTLMQEFGVKPDVVTYSTIMNAWSSAGLMEKC 368

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276
             +++++ ++G   +  A   L +     GE  +   LLE
Sbjct: 369 EEMFQDMIKSGIEPDNHAFSILAKGYVRAGEPKKAEALLE 408



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 69/344 (20%), Positives = 148/344 (43%), Gaps = 21/344 (6%)

Query: 101 YSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH- 159
           +S+   L E    PT   Y  ++A    +K  +   ++LK++EQ  ++PDS  F+ +I+ 
Sbjct: 88  HSITKGLTEEGHRPTLVTYTTVLAALTLQKRFKSIPLLLKKVEQNGLRPDSIFFNPMINA 147

Query: 160 --NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV--VLDAEIPVKS 215
                N ++ +K + +++  G + T   F ALI  +   G+ E++ ++  ++  E  +K 
Sbjct: 148 FCESGNVKEAMKIFRKMREKGCKPTASTFNALIKGFGIIGKPEESSKLLEIMSREENIKP 207

Query: 216 RSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI-ALIEHLNSEG-ELNRLIQ 273
                + LV A  +      A  V   +   G  L+P  V    I    + G E +R  +
Sbjct: 208 DDRTYNILVQAWCNKNNIEKAWGVVHRM--VGAGLKPDVVTYNTIARAYARGKETSRAAE 265

Query: 274 LLEEVHD----PDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEI 329
           L+ ++ +    P+  +  C  ++    +   ++ A   + +++       + +     + 
Sbjct: 266 LISQMQNNKVAPN--VRTCGIVVDGYSKEGNMADALKFIYKMQGFGVHPNLFIFNSLLKG 323

Query: 330 FCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYEN 389
           F  I  TD   V   L L+Q    E G+ P       ++ A  +A  +++   ++++   
Sbjct: 324 FLDI--TDTKGVDETLTLMQ----EFGVKPDVVTYSTIMNAWSSAGLMEKCEEMFQDMIK 377

Query: 390 AGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVI 433
           +G+  +  ++  + K ++ +G  K A  LL  M     H   V+
Sbjct: 378 SGIEPDNHAFSILAKGYVRAGEPKKAEALLEAMATHGAHPNVVM 421



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 78/168 (46%), Gaps = 6/168 (3%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P+  T  ++L A      F  +  +   +  + L+P+S  F  MI+   +  +   A  +
Sbjct: 101 PTLVTYTTVLAALTLQKRFKSIPLLLKKVEQNGLRPDSIFFNPMINAFCESGNVKEAMKI 160

Query: 104 LDDLKEMNLMPTASMYNAIMAGY--FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC 161
              ++E    PTAS +NA++ G+    K +    L+ +   E+ N+KPD +T++ L+   
Sbjct: 161 FRKMREKGCKPTASTFNALIKGFGIIGKPEESSKLLEIMSREE-NIKPDDRTYNILVQAW 219

Query: 162 SNEEDIIKYY---EQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
            N+ +I K +    ++  AG +     +  +  AY    E  +A +++
Sbjct: 220 CNKNNIEKAWGVVHRMVGAGLKPDVVTYNTIARAYARGKETSRAAELI 267



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 62/126 (49%), Gaps = 1/126 (0%)

Query: 33  VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92
           +++++ Q  L P +   N +++A  ES       +I+  +     KP + TF ++I    
Sbjct: 125 LLKKVEQNGLRPDSIFFNPMINAFCESGNVKEAMKIFRKMREKGCKPTASTFNALIKGFG 184

Query: 93  KIKDFDSAYSLLDDL-KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151
            I   + +  LL+ + +E N+ P    YN ++  +  K +++ A  V+  M  A +KPD 
Sbjct: 185 IIGKPEESSKLLEIMSREENIKPDDRTYNILVQAWCNKNNIEKAWGVVHRMVGAGLKPDV 244

Query: 152 QTFSYL 157
            T++ +
Sbjct: 245 VTYNTI 250


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 115/256 (44%), Gaps = 18/256 (7%)

Query: 28  HVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSM 87
           H AL    +M    + P++ T+ S+L AC   +     ++I+        + N     ++
Sbjct: 304 HEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNAL 363

Query: 88  ISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANV 147
           +++  K  + +SAY L + + + N++     +NAI++GY +      AL +  EM+   +
Sbjct: 364 VNMYAKCGNVNSAYKLFERMPKKNVVA----WNAIISGYSQHGHPHEALALFIEMQAQGI 419

Query: 148 KPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVF-------MALINAYTTCGEFE 200
           KPDS     ++  C++        EQ K   G   +  F         L++ Y  CG   
Sbjct: 420 KPDSFAIVSVLPACAH----FLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVN 475

Query: 201 KARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE 260
            A++  L   +P +      + ++ A   HG   DA+ ++ +++E G  L+  A  A++ 
Sbjct: 476 TAQK--LFERMPEQDVVS-WTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILT 532

Query: 261 HLNSEGELNRLIQLLE 276
             +  G +++ +Q  +
Sbjct: 533 ACSHAGLVDQGLQYFQ 548



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/233 (20%), Positives = 104/233 (44%), Gaps = 10/233 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL +  +M    + P++ T+ S++  C         ++I+       ++ +      +++
Sbjct: 205 ALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVN 264

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K  + ++A+ L +    M +   AS +NAI+ GY        AL     M+   +KP
Sbjct: 265 MYAKCGNVNTAHKLFE---RMPIRDVAS-WNAIIGGYSLNSQHHEALAFFNRMQVRGIKP 320

Query: 150 DSQTFSYLIHNCSN---EEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           +S T   ++  C++    E   + +     +G +    V  AL+N Y  CG    A +  
Sbjct: 321 NSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYK-- 378

Query: 207 LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALI 259
           L   +P K      +A++S  + HG   +A+ ++ E++  G   +  A+++++
Sbjct: 379 LFERMP-KKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVL 430



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 80/412 (19%), Positives = 169/412 (41%), Gaps = 42/412 (10%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL +  QM +  + P      S++ AC    +    R+++  I     + +     ++ S
Sbjct: 104 ALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALAS 163

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K    ++A  + D + + +++     +NAI+AGY +      AL +  EM+   +KP
Sbjct: 164 MYTKCGSLENARQVFDRMPKRDVVS----WNAIIAGYSQNGQPYEALALFSEMQVNGIKP 219

Query: 150 DSQTFSYLIHNCSNEEDIIKYYEQLKS-------AGGQITKYVFMALINAYTTCGEFEKA 202
           +S T   ++  C++    +   EQ K        +G +    V   L+N Y  CG    A
Sbjct: 220 NSSTLVSVMPVCAH----LLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTA 275

Query: 203 RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPR-----AVIA 257
            +  L   +P++  +   +A++   + + +  +A+  +  ++  G  ++P      +V+ 
Sbjct: 276 HK--LFERMPIRDVAS-WNAIIGGYSLNSQHHEALAFFNRMQVRG--IKPNSITMVSVLP 330

Query: 258 LIEHLNS--EGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKF 315
              HL +  +G+      +       D   +    +   C     ++SA  L +++    
Sbjct: 331 ACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKC---GNVNSAYKLFERMP--- 384

Query: 316 KDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDEL-GLPPSRKCLDFLLGACVNA 374
           K + +A    ++ I    +    P   + L    FI+ +  G+ P    +  +L AC + 
Sbjct: 385 KKNVVA----WNAIISGYSQHGHPHEALAL----FIEMQAQGIKPDSFAIVSVLPACAHF 436

Query: 375 RDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDD 426
             L++   I      +G   NV+    +   +   GN  +A KL  +MP+ D
Sbjct: 437 LALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQD 488



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 77/172 (44%), Gaps = 6/172 (3%)

Query: 79  PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMV 138
           P S     +    VK     SA +      + ++   A ++   + GY +      AL +
Sbjct: 48  PTSTVVAQLRRNKVKTTREVSACANQTQFTQTDIRNNAVVWKETIIGYVKNGFWNKALRL 107

Query: 139 LKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINAYTT 195
             +M++  + PD   F  +I  C ++ D+    K +E + + G +    V  AL + YT 
Sbjct: 108 YYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTK 167

Query: 196 CGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           CG  E ARQV     +P K      +A+++  + +G+  +A+ ++ E++  G
Sbjct: 168 CGSLENARQVF--DRMP-KRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNG 216


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 102/460 (22%), Positives = 183/460 (39%), Gaps = 47/460 (10%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           E++P + +Y  +I   C    +  AL V  QM +    P+T T +++++   +S   N  
Sbjct: 415 EMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEA 474

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +   +  H + P + T    I     +  ++ A+ L  D+K     P    Y A+++G
Sbjct: 475 FDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISG 534

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY---YEQLKSAGGQIT 182
                 ++ A+ +   M +  V P++ T++ LI N   E   IKY      L    G  T
Sbjct: 535 LCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALI-NILVENRRIKYAFVVLNLMGRNGLFT 593

Query: 183 KYV-FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVY 240
             V +  +I  Y   G+ +KA  V+ +      S + V  + ++      G T+ A+ + 
Sbjct: 594 NIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRIL 653

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC-------RLIL 293
           + +++ GC  +  +   LI       ++     L  E+ D     DG C        LI 
Sbjct: 654 DLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVD-----DGLCPNEVTYTALID 708

Query: 294 HCVRFKQLSSATDLLKQLK---------------------DKFKDDE-----MAMEYHFS 327
              + ++L +AT LL+ +K                     + F   E     M  E  F 
Sbjct: 709 GYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFP 768

Query: 328 EIFCQIATTDP--PDVQIGLDLLQFIK-DELGLPPSRKCLDFLLGACVNARDLKRAHLIW 384
            +    A  D    +    L L  F K  E G  P+      L+ A      ++ A  ++
Sbjct: 769 NVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLF 828

Query: 385 KEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424
            E E  GL  + ++Y+ M +A++ SG  + A   L +M K
Sbjct: 829 AELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIK 868



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 80/189 (42%), Gaps = 3/189 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  LI   C   K+  A  ++E M +    P+ +T N ++H   +   F+   
Sbjct: 696 LCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAE 755

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +  ++    + PN  T+ +MI    K      A  + + + E   +P    Y++++   
Sbjct: 756 ELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRAL 815

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
            ++  V+ A  +  E+E+  + PD  T+  +I         E    +  ++  AG Q T 
Sbjct: 816 GQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTL 875

Query: 184 YVFMALINA 192
           + +  LI  
Sbjct: 876 WTYGVLIKG 884



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 89/456 (19%), Positives = 177/456 (38%), Gaps = 57/456 (12%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  L+ +   L      +D   +M+   + P+    N++++A  +         I   +
Sbjct: 352 AYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKV 411

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               + P++ T+ SMI  + +  D DSA  + + + +    P    Y+ ++ G      V
Sbjct: 412 FESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRV 471

Query: 133 QGALMVLKEMEQANVKPDSQTFSY-LIHNCSNE--EDIIKYYEQLKSAGGQITKYVFMAL 189
             A  +++EM    + P + T +  +I  C     ED  + +  +K+ G +   Y + AL
Sbjct: 472 NEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTAL 531

Query: 190 INAYTTCGEFEKA----RQVVLDAEIP------------VKSRSEVKSALVSALASHGRT 233
           I+     G  + A     ++  D   P            V++R  +K A V  L   GR 
Sbjct: 532 ISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENR-RIKYAFV-VLNLMGRN 589

Query: 234 S--DAIIVYEEIKEAGCNL-EPRAVIALIEHLNSEGELNRLI---QLLEEVHDP------ 281
                I+ Y E+ +  C L +P+  + ++ ++   G    L+    +++   D       
Sbjct: 590 GLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSA 649

Query: 282 ----DYWMDGCCR--------LILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEI 329
               D   DG C+        LI    +  ++ SA  L  ++ D   D     E  ++ +
Sbjct: 650 LRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVD---DGLCPNEVTYTAL 706

Query: 330 ---FCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKE 386
              +C+    D         LL+ +K   G  P+ +  + L+       +   A  + K 
Sbjct: 707 IDGYCKDEKLD-----TATSLLEHMKRS-GCRPNVQTYNVLIHGLTKQNNFSGAEELCKV 760

Query: 387 YENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
               G+  NV++Y  M      +G+   A ++ +KM
Sbjct: 761 MIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKM 796


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 125/298 (41%), Gaps = 13/298 (4%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +I P+   Y  LI   C   ++  A  +   M    ++P+  T N+++    +       
Sbjct: 223 KIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKA 282

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +Y  +    L PN  TF  +I    K  +  SA   L D+    ++P   +YN ++ G
Sbjct: 283 LELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDG 342

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQIT 182
           Y +  ++  AL +  E+E+  + PD  T+S LI   C  +  E+     +++K  G    
Sbjct: 343 YCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPN 402

Query: 183 KYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
              +  LI+ Y   G  EKA +V     E  ++      S L+      G+   A+ +Y 
Sbjct: 403 AVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYT 462

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYW-----MDGCCR 290
           E+   G   +  A  ALI+    +G      +L +E+ +    P+ +     +DG C+
Sbjct: 463 EMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCK 520



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 78/399 (19%), Positives = 158/399 (39%), Gaps = 27/399 (6%)

Query: 41  ELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSA 100
           +++P+ +  N +L    +   F+ + ++Y  +      PN  T+ ++I    +  DF  A
Sbjct: 153 DVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKA 212

Query: 101 YSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160
           + L D++ E  + PT  +Y  ++ G   +  +  A  + + M  + + P+  T++ ++  
Sbjct: 213 FRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDG 272

Query: 161 ---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSR 216
               ++ +  ++ Y ++   G       F  LI+      E   AR+ ++D A   V   
Sbjct: 273 YCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPN 332

Query: 217 SEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276
             V + L+      G  S+A+ ++ EI++     +      LI+ L     +     LL+
Sbjct: 333 IFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQ 392

Query: 277 EVHDPDY---------WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFS 327
           E+    +          +DG C+          +  A ++  Q+ +K  +  +       
Sbjct: 393 EMKKKGFLPNAVTYNTLIDGYCKE-------GNMEKAIEVCSQMTEKGIEPNIITFSTLI 445

Query: 328 EIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEY 387
           + +C+       +  +GL     IK   GL P       L+       + K A  + KE 
Sbjct: 446 DGYCKAGKM---EAAMGLYTEMVIK---GLLPDVVAYTALIDGHFKDGNTKEAFRLHKEM 499

Query: 388 ENAGLPYNVLSYLWMYKAFLASGNRKSASKL-LSKMPKD 425
           + AGL  NV +   +       G    A KL L+K   D
Sbjct: 500 QEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTD 538



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 2/156 (1%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEF 62
           K EI P   +Y  LI   C + ++  A  ++++M +   +P+  T N+++   C+E    
Sbjct: 361 KHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEG-NM 419

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
                +   +    ++PN  TF ++I    K    ++A  L  ++    L+P    Y A+
Sbjct: 420 EKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTAL 479

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
           + G+F+  + + A  + KEM++A + P+  T S LI
Sbjct: 480 IDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLI 515


>gi|125540181|gb|EAY86576.1| hypothetical protein OsI_07956 [Oryza sativa Indica Group]
 gi|125582780|gb|EAZ23711.1| hypothetical protein OsJ_07414 [Oryza sativa Japonica Group]
 gi|215768726|dbj|BAH00955.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 500

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 112/241 (46%), Gaps = 9/241 (3%)

Query: 45  STETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLL 104
           +TET+N +L    +  +  + R ++ ++  H + P++ TF   +     I+  D A   +
Sbjct: 184 NTETMNVLLDVLCKERKIEVAREVFAVLSPH-IPPDAYTFNIFVHGWCSIRRIDEAMWTI 242

Query: 105 DDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---C 161
           +++K     P+   Y  ++  Y ++++ +    VL  M      P+  T++ ++ +   C
Sbjct: 243 EEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIMTSLAKC 302

Query: 162 SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE--- 218
              E+ +    ++KS+G +     + +LIN     G   +A Q V   E+P+   S    
Sbjct: 303 ERFEEALSVSHRMKSSGCKPDTLFYNSLINLLGKSGHLFEASQ-VFRVEMPMNGVSHNLA 361

Query: 219 VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE-HLNSEGELNRLIQLLEE 277
             + ++S    +GR  DA+ V +E++   C  + ++   L+   L+  G+ + +  LL E
Sbjct: 362 TYNTMISIFCYYGRDDDALNVLKEMEAQSCKPDIQSYRPLLRLFLSRRGQADTVRHLLSE 421

Query: 278 V 278
           +
Sbjct: 422 L 422



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 73/190 (38%), Gaps = 40/190 (21%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P + ++   +   C + ++  A+  +E+M +    PS  T  ++L A  +   F  V 
Sbjct: 215 IPPDAYTFNIFVHGWCSIRRIDEAMWTIEEMKRRGFPPSVITYTTVLEAYCKQRNFRRVY 274

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI---- 122
            +   +      PN  T+  +++   K + F+ A S+   +K     P    YN++    
Sbjct: 275 EVLDSMGSQGCHPNVITYTMIMTSLAKCERFEEALSVSHRMKSSGCKPDTLFYNSLINLL 334

Query: 123 ------------------MAG----------------YFRKKDVQGALMVLKEMEQANVK 148
                             M G                Y+ + D   AL VLKEME  + K
Sbjct: 335 GKSGHLFEASQVFRVEMPMNGVSHNLATYNTMISIFCYYGRDD--DALNVLKEMEAQSCK 392

Query: 149 PDSQTFSYLI 158
           PD Q++  L+
Sbjct: 393 PDIQSYRPLL 402


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/262 (21%), Positives = 118/262 (45%), Gaps = 12/262 (4%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +I+   +      AL++ ++M++  + P   T+ ++L AC +S    L R+++  I
Sbjct: 165 SWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWI 224

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
             H    N +   ++I L  K    ++A  L + L   +++     +N ++ GY      
Sbjct: 225 DDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVS----WNTLIGGYTHMNLY 280

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI-----IKYYEQLKSAGGQITKYVFM 187
           + AL++ +EM ++   P+  T   ++  C++   I     I  Y   K         +  
Sbjct: 281 KEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRT 340

Query: 188 ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           +LI+ Y  CG+ E A QV     +  KS S   +A++   A HGR +    ++  +++ G
Sbjct: 341 SLIDMYAKCGDIEAAHQVF--NSMLHKSLSSW-NAMIFGFAMHGRANAGFDLFSRMRKNG 397

Query: 248 CNLEPRAVIALIEHLNSEGELN 269
              +    + L+   +  G+L+
Sbjct: 398 IEPDDITFVGLLSACSHSGKLD 419



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/203 (20%), Positives = 85/203 (41%), Gaps = 30/203 (14%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL +   M+   L+P++ T   +L +C +S  F   ++I+  +     +P+     S+IS
Sbjct: 50  ALKLYVVMISLGLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLIS 109

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASM---------------------------YNAI 122
           +  +    + A+ + D     +++   ++                           +NA+
Sbjct: 110 MYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAM 169

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGG 179
           ++GY      + AL + KEM + NV+PD  T   ++  C+    +    + +  +   G 
Sbjct: 170 ISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGF 229

Query: 180 QITKYVFMALINAYTTCGEFEKA 202
                +  ALI+ Y+ CG+ E A
Sbjct: 230 GSNLKIVNALIDLYSKCGQVETA 252



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 99/209 (47%), Gaps = 14/209 (6%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLK--PNSETFR-S 86
           AL + ++M++    P+  TI SIL AC      ++ R I+  I    LK   N+ + R S
Sbjct: 283 ALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYI-DKKLKDVTNAPSLRTS 341

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           +I +  K  D ++A+ + + +    L  + S +NA++ G+           +   M +  
Sbjct: 342 LIDMYAKCGDIEAAHQVFNSM----LHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNG 397

Query: 147 VKPDSQTFSYLIHNCSNEE--DIIKYYEQLKSAGGQITKYV--FMALINAYTTCGEFEKA 202
           ++PD  TF  L+  CS+    D+ ++  +  +    IT  +  +  +I+     G F++A
Sbjct: 398 IEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEA 457

Query: 203 RQVVLDAEIPVKSRSEVKSALVSALASHG 231
           ++++    +P++    +  +L+ A   HG
Sbjct: 458 KEMI--KTMPMEPDGVIWCSLLKACRRHG 484



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 22/163 (13%)

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           L+     F  A S+   ++E    P   ++N ++ GY    D   AL +   M    + P
Sbjct: 9   LSPHFDGFPYAISVFATIQE----PNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLP 64

Query: 150 DSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK-------YVFMALINAYTTCGEFEKA 202
           +S TF +L+ +C+      K +E+ +   G + K       YV  +LI+ Y   G  E A
Sbjct: 65  NSYTFPFLLKSCAKS----KAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDA 120

Query: 203 RQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEI 243
            +V         S  +V S  AL++  AS G    A  +++EI
Sbjct: 121 HKV-----FDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEI 158


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 105/241 (43%), Gaps = 22/241 (9%)

Query: 35  EQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKI 94
           + + QG    S  ++ S L AC    +  L ++++ ++    L  +     S++S+  K 
Sbjct: 324 DMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKA 383

Query: 95  KDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTF 154
              D A +L D   +M +  T S Y+A+++GY +      A  V ++M+  NV+PD  T 
Sbjct: 384 GLIDQATTLFD---QMVVKDTVS-YSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATM 439

Query: 155 SYLIHNCSNEEDIIKYYEQLKSAGGQIT-------KYVFMALINAYTTCGEFEKARQV-- 205
             LI  CS+    +   +  K   G +          +  ALI+ Y  CG  + +RQ+  
Sbjct: 440 VSLIPACSH----LAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFD 495

Query: 206 VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
           V+ A   V   +     +++    HG   +A  ++ ++K   C  +    I LI   +  
Sbjct: 496 VMPARDIVSWNT-----MIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHS 550

Query: 266 G 266
           G
Sbjct: 551 G 551


>gi|168000162|ref|XP_001752785.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695948|gb|EDQ82289.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 482

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 92/204 (45%), Gaps = 6/204 (2%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +I P   +Y  LI       +V  A  V  +MV   L PS    N++L A  +  E    
Sbjct: 275 KIKPDVITYTGLINAYSKARRVEEAHVVFREMVASGLRPSRIAYNTLLDAYAKCKEVEGA 334

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             ++  +     +P+  ++ ++++      +   A  LL  +K+  L P    Y  +M G
Sbjct: 335 ESLFKSMGQDRCRPDIRSYTTLLAAYANTGNMKKAERLLKRMKQAGLEPNVVTYGTLMQG 394

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQIT 182
           Y    D+   L   +++++A +KP+S  F+ L+     +ED    + +++++  +G    
Sbjct: 395 YTSVHDINAMLQTFEDLQKAGIKPNSTIFTLLVRTFGQQEDFESALSWFKKMLDSGCPAD 454

Query: 183 KYVFMALINAYTTCGEFEKARQVV 206
           +    AL++A   C   E+ ++V+
Sbjct: 455 QRSRAALMDA---CQTSEQKQEVL 475



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 93/199 (46%), Gaps = 8/199 (4%)

Query: 34  VEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVK 93
           +  M   ++ P   T   +++A  ++        ++  +    L+P+   + +++    K
Sbjct: 268 LRHMQAAKIKPDVITYTGLINAYSKARRVEEAHVVFREMVASGLRPSRIAYNTLLDAYAK 327

Query: 94  IKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQT 153
            K+ + A SL   + +    P    Y  ++A Y    +++ A  +LK M+QA ++P+  T
Sbjct: 328 CKEVEGAESLFKSMGQDRCRPDIRSYTTLLAAYANTGNMKKAERLLKRMKQAGLEPNVVT 387

Query: 154 FSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR---QVVL 207
           +  L+   ++  DI   ++ +E L+ AG +    +F  L+  +    +FE A    + +L
Sbjct: 388 YGTLMQGYTSVHDINAMLQTFEDLQKAGIKPNSTIFTLLVRTFGQQEDFESALSWFKKML 447

Query: 208 DAEIPVKSRSEVKSALVSA 226
           D+  P   RS  ++AL+ A
Sbjct: 448 DSGCPADQRS--RAALMDA 464



 Score = 45.1 bits (105), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 78/176 (44%), Gaps = 6/176 (3%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
            L+PN   F S++  + +  +F  A S+  ++ +    PT   Y   +    + +    A
Sbjct: 137 GLEPNVACFTSLLEAHARTGNFVRAESIYQEMLKTGPAPTEVTYQVYINALCKAERFNDA 196

Query: 136 LMVLKEM-EQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALIN 191
             + K + E A  KPD++ ++ ++H         +    + Q+K AG  +T   F +L+ 
Sbjct: 197 ERIFKCLDESAEAKPDARLYNLMLHTYGKAGKFSEQQALFRQMKGAGVPMTVVTFNSLMA 256

Query: 192 AYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
              T  + E   + +  A+I  K      + L++A +   R  +A +V+ E+  +G
Sbjct: 257 FQKTVADAEACLRHMQAAKI--KPDVITYTGLINAYSKARRVEEAHVVFREMVASG 310


>gi|15224262|ref|NP_179484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099137|sp|O64624.1|PP163_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g18940
 gi|3004555|gb|AAC09028.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|15983785|gb|AAL10489.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|38564280|gb|AAR23719.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|330251736|gb|AEC06830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 90/439 (20%), Positives = 179/439 (40%), Gaps = 20/439 (4%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P + +Y  L+           AL V+++M +      + T N ++ A   +        +
Sbjct: 314 PGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGV 373

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
             M+    + PN+ T+ ++I    K    D A  L   +KE   +P    YNA+++   +
Sbjct: 374 IEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGK 433

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLKSAGGQITKYV 185
           K      + +L +M+     P+  T++ ++  C N   ++ + + + ++KS G +  +  
Sbjct: 434 KSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDT 493

Query: 186 FMALINAYTTCG-EFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           F  LI+AY  CG E + ++           +     +AL++ALA  G       V  ++K
Sbjct: 494 FNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMK 553

Query: 245 EAGCNLEPRAVIALIEHLNSEGE---LNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQL 301
             G      +   +++     G    + R+   ++E      WM     L+L   + + L
Sbjct: 554 SKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWML-LRTLLLANFKCRAL 612

Query: 302 SSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSR 361
           + +       K      +M +      IF +    D  +      +L+ I+++ GL P  
Sbjct: 613 AGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAE-----GILESIRED-GLSPDL 666

Query: 362 KCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSK 421
              + L+   V   +  +A  I K  E + L  +++SY  + K F   G  + A ++LS+
Sbjct: 667 VTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSE 726

Query: 422 MPKDDPHVRFVIQACKQTY 440
           M +        I+ C  TY
Sbjct: 727 MTERG------IRPCIFTY 739



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 89/183 (48%), Gaps = 4/183 (2%)

Query: 28  HVALDVVEQMV-QGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS 86
           ++ ++ +E  + +G++ PS   + ++L A  +        R + +   H  KP+   F S
Sbjct: 577 YLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNS 636

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           M+S+  +   +D A  +L+ ++E  L P    YN++M  Y R+ +   A  +LK +E++ 
Sbjct: 637 MLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQ 696

Query: 147 VKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203
           +KPD  +++ +I         ++ ++   ++   G +   + +   ++ YT  G F +  
Sbjct: 697 LKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIE 756

Query: 204 QVV 206
            V+
Sbjct: 757 DVI 759



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 71/353 (20%), Positives = 138/353 (39%), Gaps = 50/353 (14%)

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR-KKDVQGALMVLKEMEQANVKPDS 151
           +   ++ A  L + +KEM   PT   YN I+  + +  +  +  L VL EM    +K D 
Sbjct: 222 RTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDE 281

Query: 152 QTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
            T S ++  C+ E    +  +++ +LKS G +     + AL+  +   G + +A  V+ +
Sbjct: 282 FTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKE 341

Query: 209 A-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
             E    + S   + LV+A    G + +A  V E + + G          +I+     G+
Sbjct: 342 MEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGK 401

Query: 268 LNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFS 327
            +  ++L   + +      GC              +   +L  L  K + +EM       
Sbjct: 402 EDEALKLFYSMKEA-----GC---------VPNTCTYNAVLSLLGKKSRSNEMI------ 441

Query: 328 EIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEY 387
           ++ C + +                    G  P+R   + +L  C N    K  + +++E 
Sbjct: 442 KMLCDMKSN-------------------GCSPNRATWNTMLALCGNKGMDKFVNRVFREM 482

Query: 388 ENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQACKQTY 440
           ++ G   +  ++  +  A+   G+   ASK+  +M       R    AC  TY
Sbjct: 483 KSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEM------TRAGFNACVTTY 529



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 32/151 (21%), Positives = 71/151 (47%), Gaps = 3/151 (1%)

Query: 31  LDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL 90
           L V+++M    L     T +++L AC         +  +  +     +P + T+ +++ +
Sbjct: 266 LGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQV 325

Query: 91  NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD 150
             K   +  A S+L +++E +    +  YN ++A Y R    + A  V++ M +  V P+
Sbjct: 326 FGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPN 385

Query: 151 SQTFSYLI---HNCSNEEDIIKYYEQLKSAG 178
           + T++ +I        E++ +K +  +K AG
Sbjct: 386 AITYTTVIDAYGKAGKEDEALKLFYSMKEAG 416


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/355 (20%), Positives = 145/355 (40%), Gaps = 45/355 (12%)

Query: 79  PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMV 138
           P+  T+  +I     + + ++A  LLDD+    + P A++Y +++A    K  V  AL V
Sbjct: 292 PDVVTYGILIHGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTV 351

Query: 139 LKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINAYTT 195
           +++M    V  D   ++ ++    N+ D++   +++++++  G       +  LIN    
Sbjct: 352 VEDMVHHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCR 411

Query: 196 CGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRA 254
            GE ++A +V+ +         EV  + LV      G+ ++A  V+  + + G       
Sbjct: 412 AGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVT 471

Query: 255 VIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQL-KD 313
             AL + L  +G++    +LL E+ +    ++ C              +   L+  L K 
Sbjct: 472 YTALSDGLCKQGDVQAANELLHEMSNKGLELNAC--------------TYNSLINGLCKA 517

Query: 314 KFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVN 373
            + D  M                     +   D+     D  GL P       L+ A   
Sbjct: 518 GYLDQAM---------------------RTMADM-----DAAGLKPDVYTYTTLIDALCK 551

Query: 374 ARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPH 428
           + +L RAH + +E  + G+   +++Y  +   F  SG  +   KLL  M + + H
Sbjct: 552 SGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIH 606



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/277 (21%), Positives = 124/277 (44%), Gaps = 6/277 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           + P+  +Y  L    C    V  A +++ +M    L  +  T NS+++  C+  Y    +
Sbjct: 465 VAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAM 524

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           R +  M     LKP+  T+ ++I    K  + D A+ LL ++ +  + PT   YN +M G
Sbjct: 525 RTMADMDAA-GLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNG 583

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQIT 182
           +     V+G   +L+ M + N+ P++ T++ L+      +N +   + Y+ + S   +  
Sbjct: 584 FCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPN 643

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
           +  +  LI  +      ++A+    +  E   +  +   SAL+  L    +  +A  ++ 
Sbjct: 644 ENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKFVEARKLFH 703

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           ++++ G   EP      I+   +E  L   + L +E+
Sbjct: 704 DMRKEGFTAEPDVYNFYIDFNFNEDNLEATLALCDEL 740



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/245 (20%), Positives = 102/245 (41%), Gaps = 4/245 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P++  Y  ++   CD  +V  AL VVE MV  +++       ++L       +    R
Sbjct: 325 VEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSAR 384

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R +  +    L  +  T+ ++I+   +  +   A  +L ++    L      Y  ++ GY
Sbjct: 385 RWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGY 444

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITK 183
            ++  +  A  V   M Q  V P+  T++ L      + D+    E   ++ + G ++  
Sbjct: 445 CKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNA 504

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             + +LIN     G  ++A + + D +   +K      + L+ AL   G    A  + +E
Sbjct: 505 CTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQE 564

Query: 243 IKEAG 247
           + + G
Sbjct: 565 MLDNG 569



 Score = 40.0 bits (92), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 31/148 (20%), Positives = 62/148 (41%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  L+   C   K+  A  V   MVQ  + P+  T  ++     +  +      +   +
Sbjct: 436 TYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEM 495

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
            +  L+ N+ T+ S+I+   K    D A   + D+    L P    Y  ++    +  ++
Sbjct: 496 SNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGEL 555

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHN 160
             A  +L+EM    +KP   T++ L++ 
Sbjct: 556 DRAHDLLQEMLDNGIKPTIVTYNVLMNG 583


>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
          Length = 876

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/275 (19%), Positives = 118/275 (42%), Gaps = 5/275 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
            TP+  ++  LI   C   K   AL +  +M+  +     +    ++++  +       +
Sbjct: 273 FTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAK 332

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   I  + L PN  T+ S+I    K    D A  +L  ++     P A  YN++M G 
Sbjct: 333 ELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGL 392

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITK 183
            + K +  A+ +L +M++  + P+  T++ L+    +E D     + +E ++  G +  +
Sbjct: 393 VKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDE 452

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
           + +  L +A    G  E+A   ++   + +       + L+   +  G T  A  + E +
Sbjct: 453 HAYAVLTDALCKAGRAEEAYSFIVRKGVALTKV--YYTTLIDGFSKAGNTDFAATLIERM 510

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            + GC  +      L+  L  +  LN  + +L+++
Sbjct: 511 IDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQM 545



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 108/241 (44%), Gaps = 5/241 (2%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A +++ ++    LVP+  T  SI+    +S + ++   +  M+     +PN+ T+ S++ 
Sbjct: 331 AKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMY 390

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
             VK K    A +LL  +++  ++P    Y  ++ G   + D   A  + + MEQ  +KP
Sbjct: 391 GLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKP 450

Query: 150 DSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV--- 206
           D   ++ L           + Y  +   G  +TK  +  LI+ ++  G  + A  ++   
Sbjct: 451 DEHAYAVLTDALCKAGRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERM 510

Query: 207 LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
           +D      S +   S L+ AL    R ++A+ + +++   G      A   LI+ +  EG
Sbjct: 511 IDEGCTPDSYT--YSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREG 568

Query: 267 E 267
           +
Sbjct: 569 K 569



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 96/460 (20%), Positives = 176/460 (38%), Gaps = 57/460 (12%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSI-------------- 52
           + P + +Y  +I   C    +  A      +++G L P T T N++              
Sbjct: 64  LLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKAC 123

Query: 53  -------LHACEES-YEFNL----------VRR---IYPMICHHNLKPNSETFRSMISLN 91
                  L  C+ + Y + +          VR+   ++ M+      PN   F  +IS  
Sbjct: 124 WLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGL 183

Query: 92  VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151
            K      A  L D + +  ++P+   YNA++ GY +   +  AL + + ME+    PD 
Sbjct: 184 CKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDD 243

Query: 152 QTFSYLIHNCSNE--EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA-RQVVLD 208
            T++ LI+   ++  E+  +        G   T   F  LIN Y    +F+ A R     
Sbjct: 244 WTYNTLIYGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKM 303

Query: 209 AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV--IALIEHLNSEG 266
                K   +V   L+++L    R  +A  +  EI   G  L P  +   ++I+     G
Sbjct: 304 MSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANG--LVPNVITYTSIIDGYCKSG 361

Query: 267 ELNRLIQLLEEVH----DPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAM 322
           +++  +++L+ +      P+ W      L+   V+ K+L  A  LL +++   KD  +  
Sbjct: 362 KVDIALEVLKMMERDGCQPNAWTYN--SLMYGLVKDKKLHKAMALLTKMQ---KDGIIPN 416

Query: 323 EYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHL 382
              ++ +       D  D      L + ++   GL P       L  A   A    RA  
Sbjct: 417 VITYTTLL--QGQCDEHDFDNAFRLFEMMEQN-GLKPDEHAYAVLTDALCKA---GRAEE 470

Query: 383 IWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
            +      G+    + Y  +   F  +GN   A+ L+ +M
Sbjct: 471 AYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERM 510



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 136/316 (43%), Gaps = 24/316 (7%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  LI   CD  K   A +++   V+    P+  T  ++++    + +F+   R+
Sbjct: 241 PDDWTYNTLIYGLCDQ-KTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRM 299

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +     K + + F  +I+  +K      A  LL+++    L+P    Y +I+ GY +
Sbjct: 300 KNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCK 359

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMA 188
              V  AL VLK ME+   +P++ T++ L++    ++ + K    L     ++ K   + 
Sbjct: 360 SGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLT----KMQKDGIIP 415

Query: 189 LINAYTT-----CGE--FEKA-RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
            +  YTT     C E  F+ A R   +  +  +K      + L  AL   GR  +A   Y
Sbjct: 416 NVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEA---Y 472

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYWMDGCCRLILHCV 296
             I   G  L       LI+  +  G  +    L+E + D    PD +      ++LH +
Sbjct: 473 SFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYS---VLLHAL 529

Query: 297 -RFKQLSSATDLLKQL 311
            + K+L+ A  +L Q+
Sbjct: 530 CKQKRLNEALPILDQM 545



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/318 (17%), Positives = 129/318 (40%), Gaps = 40/318 (12%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  +I   C   KV +AL+V++ M +    P+  T NS+++   +  + +   
Sbjct: 343 LVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAM 402

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMP------------ 114
            +   +    + PN  T+ +++       DFD+A+ L + +++  L P            
Sbjct: 403 ALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDAL 462

Query: 115 --------------------TASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTF 154
                               T   Y  ++ G+ +  +   A  +++ M      PDS T+
Sbjct: 463 CKAGRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTY 522

Query: 155 SYLIHNCSNEE---DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AE 210
           S L+H    ++   + +   +Q+   G + T + +  LI+     G+ + A+++  +   
Sbjct: 523 SVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTS 582

Query: 211 IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNR 270
              K  +   +  +++    GR  DA  +  +++  G   +      LI+     G ++R
Sbjct: 583 SGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDR 642

Query: 271 LIQLLEEV----HDPDYW 284
               L+ +     +P+YW
Sbjct: 643 AFSTLKRMVGASCEPNYW 660



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 80/367 (21%), Positives = 140/367 (38%), Gaps = 52/367 (14%)

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R+Y  +    L P++ T+ +MI    K  D  +A+     L E  L P     NA++ GY
Sbjct: 54  RVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGY 113

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITK 183
            R  +++ A  +   M     + +  +++ LI    + + + K    +  +K  G     
Sbjct: 114 CRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNV 173

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA--EIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
             F  LI+     G    AR ++ DA  +  V       +A++   +  GR +DA+ + E
Sbjct: 174 RAFTFLISGLCKSGRVGDAR-LLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKE 232

Query: 242 EIKEAGCNLEPRAVIALIEHL---NSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRF 298
            +++ GC+ +      LI  L    +E     L   ++E   P              V F
Sbjct: 233 LMEKNGCHPDDWTYNTLIYGLCDQKTEEAEELLNNAVKEGFTPTV------------VTF 280

Query: 299 KQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLP 358
             L +       + +KF DD + M+       C+            LDL  F K      
Sbjct: 281 TNLINGY----CMAEKF-DDALRMKNKMMSSKCK------------LDLQVFGK------ 317

Query: 359 PSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKL 418
                   L+ + +    LK A  +  E    GL  NV++Y  +   +  SG    A ++
Sbjct: 318 --------LINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEV 369

Query: 419 LSKMPKD 425
           L  M +D
Sbjct: 370 LKMMERD 376



 Score = 42.0 bits (97), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 69/155 (44%), Gaps = 8/155 (5%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQM----VQGELVPSTETINSILHACEESYEFN 63
           TP S +Y  L+   C   +++ AL +++QM    ++  +   T  I+ +L   +  +   
Sbjct: 516 TPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDH--- 572

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             +R+Y  +     KP++ T+   I+   K    + A  L+  ++   + P    YN ++
Sbjct: 573 -AKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILI 631

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            G      +  A   LK M  A+ +P+  T+  L+
Sbjct: 632 DGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLL 666



 Score = 40.0 bits (92), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 74/186 (39%), Gaps = 20/186 (10%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSIL-----------HA 55
           + P   +Y  LI     +  +  A   +++MV     P+  T   +L            +
Sbjct: 620 VAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRS 679

Query: 56  CEESYEFNLVR-----RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEM 110
            + S  +NL+      ++   +  H L P   T+ S+I+   K    + A  LLD +   
Sbjct: 680 VDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGK 739

Query: 111 NLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY 170
            L P   +Y  ++      K  + AL  +  M +   +P  +++  L+    NE D    
Sbjct: 740 GLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGD---- 795

Query: 171 YEQLKS 176
           +E++KS
Sbjct: 796 FEKVKS 801


>gi|297740419|emb|CBI30601.3| unnamed protein product [Vitis vinifera]
          Length = 501

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 154/346 (44%), Gaps = 33/346 (9%)

Query: 39  QGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFD 98
           +G   P++ + + +L  C  +       +I+  I    L  +      +I+L  K ++F 
Sbjct: 39  KGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFG 98

Query: 99  SAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            A  L+D+  E +L+     ++A+++GY +     GALM   EM    VK +  TFS ++
Sbjct: 99  YARKLVDESSEPDLVS----WSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVL 154

Query: 159 HNCSNEEDIIKYYEQLKS----AGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVK 214
             CS  +D ++  +Q+      +G +   +V   L+  Y  C EF  +++  L  EIP  
Sbjct: 155 KACSIVKD-LRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKR--LFDEIP-- 209

Query: 215 SRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQ 273
            R+ V  +AL S L    R     I++  + + G + +P +  AL++     G+L   I 
Sbjct: 210 ERNVVSWNALFSCLRDSSRGK---IIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAIS 266

Query: 274 LLEEVHDPDY--WMDGCCRLILHCVRFKQLSSATDLLKQLKD-KFKDDEMAMEYHFSEIF 330
           + E++  PD   W      +I    ++ Q   A  L  +++D + K D   + +  S + 
Sbjct: 267 VFEKIKQPDIVSWN----AVIAAYAQYGQGEEALKLFLEMQDMELKPDRGIVSW--SAMI 320

Query: 331 CQIATTDPPDVQIGLDLLQFIKDEL--GLPPSRKCLDFLLGACVNA 374
             +A         G   LQ     L  G+ P+   L  +LGAC +A
Sbjct: 321 GGLAQHGH-----GRQALQLFNQMLKEGVSPNHITLVSVLGACNHA 361


>gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Glycine max]
          Length = 1476

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/301 (19%), Positives = 132/301 (43%), Gaps = 17/301 (5%)

Query: 8   TPSSASYKKLIT--YSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
            P   S+  LI        ++ ++AL ++ ++ +  + P   T N+++ AC         
Sbjct: 281 VPDLVSFNTLINARMKSGAMEPNLALQLLNEVRRSGIRPDIITYNTLISACSRESNLEEA 340

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             ++  +  H  +P+  T+ +MIS+  +      A  L  +L+     P A  YN+++  
Sbjct: 341 VAVFSDMESHRCQPDLWTYNAMISVYGRCARARKAEELFKELESKGFFPDAVTYNSLLYA 400

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQIT 182
           + R+ + +    + +EM +     D  T++ +IH    +   +  ++ Y  +KS+G    
Sbjct: 401 FSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGRHDQAMQIYRDMKSSGRNPD 460

Query: 183 KYVFMALINAYTTCGEFEKARQV---VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
              +  LI++     + E+A  V   +LDA   VK      SAL+ A A  G+  +A   
Sbjct: 461 AVTYTVLIDSLGKASKVEEAANVMSEMLDA--GVKPTLHTYSALICAYAKAGKREEAEET 518

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLI----QLLEEVHDPDYWMDGCCRLILHC 295
           +  ++ +G   +  A   +++      E+ + +    +++ E   PD   +G   +++H 
Sbjct: 519 FNCMRRSGIKPDRLAYSVMLDFFLRFNEMKKAMGLYHEMIREGFTPD---NGLYEVMMHA 575

Query: 296 V 296
           +
Sbjct: 576 L 576



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/279 (20%), Positives = 115/279 (41%), Gaps = 4/279 (1%)

Query: 9    PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
            P+   Y+ ++   C   +V     ++ +M +    P  +  NSIL       +F  +  I
Sbjct: 912  PTMHVYRIMLRLLCKCKRVRDVETMLCEMEEAGFQPDLQICNSILKLYLGIEDFKSMGII 971

Query: 69   YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
            Y  I   +LKP+ ET+ ++I +  + +  +  +SL++ ++ + L P    Y +++  + +
Sbjct: 972  YQKIQDASLKPDEETYNTLIIMYCRDRRPEEGFSLMNKMRSLGLEPKLDTYRSLITAFNK 1031

Query: 129  KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQL---KSAGGQITKYV 185
            ++  + A  + +E+     K D   +  ++       D  K    L   K +G + T   
Sbjct: 1032 QRMYEQAEELFEELRSNGYKLDRAFYHLMMKTYRTSGDHRKAENLLAIMKESGIEPTIST 1091

Query: 186  FMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
               L+ +Y   G+ E+A  V+ +     V   +   S+++ A    G     I    E+K
Sbjct: 1092 MHLLMVSYGKSGQPEEAENVLKNLRTTGVVLDTLPYSSVIDAYLKKGDFKAGIEKLTEMK 1151

Query: 245  EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY 283
            EAG   + R     I         N  I LL  + D  +
Sbjct: 1152 EAGIEPDHRIWTCFIRAATLSEGTNEAIVLLNALQDAGF 1190



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 124/260 (47%), Gaps = 15/260 (5%)

Query: 30   ALDVVEQMVQ-GELVPSTETINS-ILHACEESYE---FNLVRRIYPMICHHNLKPNSETF 84
            ++ ++ Q +Q   L P  ET N+ I+  C +      F+L+ ++  +     L+P  +T+
Sbjct: 967  SMGIIYQKIQDASLKPDEETYNTLIIMYCRDRRPEEGFSLMNKMRSL----GLEPKLDTY 1022

Query: 85   RSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQ 144
            RS+I+   K + ++ A  L ++L+        + Y+ +M  Y    D + A  +L  M++
Sbjct: 1023 RSLITAFNKQRMYEQAEELFEELRSNGYKLDRAFYHLMMKTYRTSGDHRKAENLLAIMKE 1082

Query: 145  ANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEK 201
            + ++P   T   L+         E+     + L++ G  +    + ++I+AY   G+F+ 
Sbjct: 1083 SGIEPTISTMHLLMVSYGKSGQPEEAENVLKNLRTTGVVLDTLPYSSVIDAYLKKGDFKA 1142

Query: 202  ARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE 260
              + + +  E  ++    + +  + A      T++AI++   +++AG +L  R +    E
Sbjct: 1143 GIEKLTEMKEAGIEPDHRIWTCFIRAATLSEGTNEAIVLLNALQDAGFDLPIRLLKEKSE 1202

Query: 261  HLNSEGELNRLIQLLEEVHD 280
             L S  E+++ ++ LE V D
Sbjct: 1203 SLVS--EVDQCLERLEPVED 1220



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 63/328 (19%), Positives = 134/328 (40%), Gaps = 53/328 (16%)

Query: 33   VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92
            V++++    L  S  +I   L A  ++     V++IY  +      P    +R M+ L  
Sbjct: 866  VIQELQDMGLKISKSSILLTLEAFAQAGNLFEVQKIYNGMKAAGYFPTMHVYRIMLRLLC 925

Query: 93   KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
            K K      ++L +++E    P   + N+I+  Y   +D +   ++ ++++ A++KPD +
Sbjct: 926  KCKRVRDVETMLCEMEEAGFQPDLQICNSILKLYLGIEDFKSMGIIYQKIQDASLKPDEE 985

Query: 153  TFSYL-IHNCSNE-------------------------------------EDIIKYYEQL 174
            T++ L I  C +                                      E   + +E+L
Sbjct: 986  TYNTLIIMYCRDRRPEEGFSLMNKMRSLGLEPKLDTYRSLITAFNKQRMYEQAEELFEEL 1045

Query: 175  KSAGGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRT 233
            +S G ++ +  +  ++  Y T G+  KA  ++ +  E  ++        L+ +    G+ 
Sbjct: 1046 RSNGYKLDRAFYHLMMKTYRTSGDHRKAENLLAIMKESGIEPTISTMHLLMVSYGKSGQP 1105

Query: 234  SDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDYWMDGCC 289
             +A  V + ++  G  L+     ++I+    +G+    I+ L E+     +PD+ +  C 
Sbjct: 1106 EEAENVLKNLRTTGVVLDTLPYSSVIDAYLKKGDFKAGIEKLTEMKEAGIEPDHRIWTC- 1164

Query: 290  RLILHCVRFKQLSSATD----LLKQLKD 313
                  +R   LS  T+    LL  L+D
Sbjct: 1165 -----FIRAATLSEGTNEAIVLLNALQD 1187



 Score = 45.1 bits (105), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 75/389 (19%), Positives = 156/389 (40%), Gaps = 63/389 (16%)

Query: 84   FRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME 143
            + S+I   ++ + FD A  +  D++   +  +  +Y  +++ Y R    + A  +L   E
Sbjct: 705  YESLIQECIQNELFDVASQIFSDMRFNGVESSECLYQGMVSVYCRMDLPETAHHLLYHAE 764

Query: 144  QANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK-------------SAGGQITKYVFMALI 190
            +  +  D+    Y+        DI++ Y +LK                 ++ + V+ ALI
Sbjct: 765  KNGIILDNDISVYI--------DIVETYGKLKIWQKAESLVGSLRQRCSKMDRKVWNALI 816

Query: 191  NAYTTCGEFEKARQV--VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC 248
            +AY   G +E+AR +   +  + P  +   V + L+ AL    R ++  +V +E+++ G 
Sbjct: 817  HAYAFSGCYERARAIFNTMMRDGPSPTVDSV-NGLLQALIVDRRLNELYVVIQELQDMGL 875

Query: 249  NLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDG-----CCRLILHCVRFKQLSS 303
             +   +++  +E     G L  + ++   +    Y+          RL+  C R + +  
Sbjct: 876  KISKSSILLTLEAFAQAGNLFEVQKIYNGMKAAGYFPTMHVYRIMLRLLCKCKRVRDVE- 934

Query: 304  ATDLLKQLKDKFK----------------DDEMAMEYHFSEIFCQIATTDPPDVQIGLDL 347
             T L +  +  F+                +D  +M   + +I  Q A+  P +      +
Sbjct: 935  -TMLCEMEEAGFQPDLQICNSILKLYLGIEDFKSMGIIYQKI--QDASLKPDEETYNTLI 991

Query: 348  LQFIKDE--------------LGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLP 393
            + + +D               LGL P       L+ A    R  ++A  +++E  + G  
Sbjct: 992  IMYCRDRRPEEGFSLMNKMRSLGLEPKLDTYRSLITAFNKQRMYEQAEELFEELRSNGYK 1051

Query: 394  YNVLSYLWMYKAFLASGNRKSASKLLSKM 422
             +   Y  M K +  SG+ + A  LL+ M
Sbjct: 1052 LDRAFYHLMMKTYRTSGDHRKAENLLAIM 1080



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 92/228 (40%), Gaps = 10/228 (4%)

Query: 7    ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
            + P   +Y  LI   C   +      ++ +M    L P  +T  S++ A  +   +    
Sbjct: 980  LKPDEETYNTLIIMYCRDRRPEEGFSLMNKMRSLGLEPKLDTYRSLITAFNKQRMYEQAE 1039

Query: 67   RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
             ++  +  +  K +   +  M+       D   A +LL  +KE  + PT S  + +M  Y
Sbjct: 1040 ELFEELRSNGYKLDRAFYHLMMKTYRTSGDHRKAENLLAIMKESGIEPTISTMHLLMVSY 1099

Query: 127  FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITK 183
             +    + A  VLK +    V  D+  +S +I     + D    I+   ++K AG +   
Sbjct: 1100 GKSGQPEEAENVLKNLRTTGVVLDTLPYSSVIDAYLKKGDFKAGIEKLTEMKEAGIEPDH 1159

Query: 184  YVFMALINAYTTCGEFEKARQVVLDA------EIPVKSRSEVKSALVS 225
             ++   I A  T  E      V+L+A      ++P++   E   +LVS
Sbjct: 1160 RIWTCFIRA-ATLSEGTNEAIVLLNALQDAGFDLPIRLLKEKSESLVS 1206


>gi|302766669|ref|XP_002966755.1| hypothetical protein SELMODRAFT_85926 [Selaginella moellendorffii]
 gi|300166175|gb|EFJ32782.1| hypothetical protein SELMODRAFT_85926 [Selaginella moellendorffii]
          Length = 811

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 112/230 (48%), Gaps = 10/230 (4%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P T  + S + AC  +   +  R I+  I    L  ++     ++++  + K+   A   
Sbjct: 127 PDTVMLLSAITACSSAEFLDDGRAIHAQISSRELDHHTHLGNGLVNMYGRCKELHRARKA 186

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163
            + +   NL+     +N I+  Y ++     A+ + + M+   V  D+ TF +++  C  
Sbjct: 187 FEKITAKNLVS----WNVIIGAYAQEGHRGHAMELFQRMDPEGVAADAVTFLHVLDACGG 242

Query: 164 EE---DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK 220
            E   D+ + +++L+ +G +   +V  +L+NAY  CG   +A++V     +P+K+   + 
Sbjct: 243 VEAAGDVRRIHKKLELSGLEWDVFVASSLVNAYGKCGCLAEAKRVF--DTMPLKNTVTMT 300

Query: 221 SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNR 270
           S +++A A HG   +A+ +Y E++  G   +    I+ ++  +S G L++
Sbjct: 301 S-MLAAYAQHGLGEEALEIYREMESQGRKADRVTFISALDACSSIGALSQ 349



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 108/246 (43%), Gaps = 19/246 (7%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNL--KPNSETFRSM 87
           AL++  +M          T  S L AC      +  R I+  +    +  +P+     ++
Sbjct: 315 ALEIYREMESQGRKADRVTFISALDACSSIGALSQGRAIHSRLLVSGIIQQPDVVLGTAL 374

Query: 88  ISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANV 147
           +++  +    D+A SL D + + N +     +NA+M  Y +    + AL +   M   + 
Sbjct: 375 LNMYGRCGVLDAAKSLFDGMADKNTIT----WNALMGSYAQWGYGKEALNLYHSM---DA 427

Query: 148 KPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204
           +P+S TF  ++  CS    +++    + +L  AG +    V +AL+N Y  CG  E A  
Sbjct: 428 QPNSLTFLAMLTACSTVGALLQGRAAHARLAPAGFEKEVEVGVALVNMYGKCGSLEDALG 487

Query: 205 VVLDAEIPVKSRSEVKSALVS--ALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
                E     R  V +  V+  ALA HG   + + ++ E++  G   +  A++A +   
Sbjct: 488 TFAKLE-----RKTVVTWTVAMLALAHHGEFRETLRLFTEMELDGVAPDSVALLAALFAC 542

Query: 263 NSEGEL 268
           +  G+L
Sbjct: 543 SHSGKL 548


>gi|224061569|ref|XP_002300545.1| predicted protein [Populus trichocarpa]
 gi|222847803|gb|EEE85350.1| predicted protein [Populus trichocarpa]
          Length = 567

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 143/317 (45%), Gaps = 17/317 (5%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTET----INSILHACEESYEFNL 64
           P  A   +L+   C   K+  A  V+E  ++  ++P   +    +N++       Y   L
Sbjct: 95  PDVAQATQLLYDLCKSNKMKKATRVMEMTIESGIIPDAASYTFLVNNLCKRGNIGYAMQL 154

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
           V ++    C      N+ T+ S++    K  + + +  LLD L    L+P    ++ ++ 
Sbjct: 155 VEKMEENGC----PTNTVTYNSLVRGLCKHGNLNQSLQLLDKLMRKGLVPNEFTHSFLLE 210

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQI 181
             ++++ V  A+ +L  +     KP+  +++ L+     E   E+ I+++  L S G   
Sbjct: 211 AAYKERGVDEAMKLLDGIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIQFFRDLPSKGFNP 270

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVY 240
                  ++ +    G +E+A ++V + +   +S S V  + L+ +LASHGR   A  V 
Sbjct: 271 NVVSCNIILRSLCCEGRWEEANELVAEMDSEERSPSLVTYNILIGSLASHGRIQHAFQVL 330

Query: 241 EEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEE-VHDPDYWMDGCCRLILHCVR 297
           +E+  A  + +P A     +I HL  EG+ + +++ L++ +H      DG    I     
Sbjct: 331 DEMMRA--SFQPSAATFNPIISHLCKEGKADLVVKCLDQMIHHCCNPNDGTFNAIAVLCE 388

Query: 298 FKQLSSATDLLKQLKDK 314
             ++  A  +++ L +K
Sbjct: 389 GGRVQRAFSIIQSLGNK 405



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 3/156 (1%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSIL-HACEESYEFNL 64
           E +PS  +Y  LI       ++  A  V+++M++    PS  T N I+ H C+E  + +L
Sbjct: 302 ERSPSLVTYNILIGSLASHGRIQHAFQVLDEMMRASFQPSAATFNPIISHLCKEG-KADL 360

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
           V +    + HH   PN  TF + I++  +      A+S++  L       T   Y  +++
Sbjct: 361 VVKCLDQMIHHCCNPNDGTFNA-IAVLCEGGRVQRAFSIIQSLGNKQNSSTHDFYRGVIS 419

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160
              RK +   A  +L EM Q+   PD  T+S LI  
Sbjct: 420 SLCRKGNTYPAFQLLYEMIQSGFVPDPYTYSSLIRG 455


>gi|413918448|gb|AFW58380.1| hypothetical protein ZEAMMB73_073366 [Zea mays]
          Length = 414

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/283 (21%), Positives = 129/283 (45%), Gaps = 18/283 (6%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN---- 63
           +P   S+  +I   C +  +  AL++VE+M +    P T T N ++       + N    
Sbjct: 79  SPDVWSFNVVIKGVCRVGNLQKALELVERMTEFGCSPDTITQNILVDGLCRVKQVNKGHE 138

Query: 64  LVRRIY-PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           ++RR+    +C     PN  T+ S+IS   K      A+S+ +D+ +    P    YN +
Sbjct: 139 VLRRLQRDGVC----MPNVVTYTSVISGYCKAGRMKDAFSVYNDMLQSGTRPNTVTYNVL 194

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGG 179
           + GY +  D++ A+ +  ++   +  PD  TF+ LI     C   +D ++ + ++     
Sbjct: 195 INGYGKALDMESAVRMYWQLILHSCPPDVVTFNSLIDGYCRCGQLDDAMRIWMEMGQHHI 254

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKS----RSEVKSALVSALASHGRTSD 235
           Q   Y F  +I  ++ C +   A  + L  E+ +++    ++ + + ++  L   G+  +
Sbjct: 255 QPNVYTFSIII--HSLCTQNRSAEALSLLRELNMRADIVPQTFIYNPIIDILCKGGKVDE 312

Query: 236 AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           A ++  +++E GC+ +      LI     +G +   + L  ++
Sbjct: 313 ANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAVTLFHKM 355



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 60/291 (20%), Positives = 131/291 (45%), Gaps = 22/291 (7%)

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNL-MPTASMYNAI 122
           LV R+    C     P++ T   ++    ++K  +  + +L  L+   + MP    Y ++
Sbjct: 104 LVERMTEFGC----SPDTITQNILVDGLCRVKQVNKGHEVLRRLQRDGVCMPNVVTYTSV 159

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGG 179
           ++GY +   ++ A  V  +M Q+  +P++ T++ LI+      D+   ++ Y QL     
Sbjct: 160 ISGYCKAGRMKDAFSVYNDMLQSGTRPNTVTYNVLINGYGKALDMESAVRMYWQLILHSC 219

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAII 238
                 F +LI+ Y  CG+ + A ++ ++  +  ++      S ++ +L +  R+++A+ 
Sbjct: 220 PPDVVTFNSLIDGYCRCGQLDDAMRIWMEMGQHHIQPNVYTFSIIIHSLCTQNRSAEALS 279

Query: 239 VYEEIKEAGCNLEPRAVI--ALIEHLNSEG---ELNRLIQLLEE--VHDPDYWMDGCCRL 291
           +  E+     ++ P+  I   +I+ L   G   E N ++  +EE   H   Y       +
Sbjct: 280 LLRELNMRA-DIVPQTFIYNPIIDILCKGGKVDEANLIVTDMEEKGCHPDKYTYT--ILI 336

Query: 292 ILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQ 342
           I HC++ +   + T   K ++   + D + +    S I C +    P +V 
Sbjct: 337 IGHCMKGRIPEAVTLFHKMVETGCRPDNITIN---SFISCVLKAGMPNEVH 384


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 122/288 (42%), Gaps = 40/288 (13%)

Query: 1   MHAKLE---ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACE 57
           M+ K++   + P+  +Y  ++   C   +   A  V ++M +  +  +  T N+++    
Sbjct: 255 MYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLC 314

Query: 58  ESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTAS 117
              + N   ++   +    + PN  T+ ++I     +     A SL  DLK   L P+  
Sbjct: 315 REMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLV 374

Query: 118 MYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA 177
            YN +++G+ RK D  GA  ++KEME+  +KP   T++ LI   +  +++          
Sbjct: 375 TYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNM---------- 424

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDA 236
                                 EKA Q+ L   E+ +       S L+      G+ ++A
Sbjct: 425 ----------------------EKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEA 462

Query: 237 IIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPD 282
             +++ + E  C  EP  VI   +I     EG   R ++LL+E+ + +
Sbjct: 463 SRLFKSMVEKNC--EPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKE 508



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 88/461 (19%), Positives = 180/461 (39%), Gaps = 63/461 (13%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICH--------------- 74
           A  ++ Q++ G++     T +S+LH   ES       R+Y +I +               
Sbjct: 58  AQSLLLQVISGKIHSQFFTSSSLLHYLTESETSKTKFRLYEVIINSYVQSQSLNLSISYF 117

Query: 75  -----HNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
                +   P S  F  +++  V    F+  +S  ++ K   ++   S +  ++ G    
Sbjct: 118 NEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENKSKVVLDVYS-FGILIKGCCEA 176

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVF 186
            +++ +  +L E+ +    P+   ++ LI  C  + +I K    + ++   G    +  +
Sbjct: 177 GEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTY 236

Query: 187 MALINAYTTCG----EFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             LIN     G     FE   ++  D   P        + +++ L   GRT DA  V++E
Sbjct: 237 TVLINGLFKNGVKKQGFEMYEKMQEDGVFP---NLYTYNCVMNQLCKDGRTKDAFQVFDE 293

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDY-----WMDGCCRLIL 293
           ++E G +        LI  L  E +LN   ++++++     +P+       +DG C +  
Sbjct: 294 MRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGV-- 351

Query: 294 HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIK- 352
                 +L  A  L + LK +     +         FC+   T            + +K 
Sbjct: 352 -----GKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAA--------KMVKE 398

Query: 353 -DELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGN 411
            +E G+ PS+     L+     + ++++A  +    E  GL  +V +Y  +   F   G 
Sbjct: 399 MEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQ 458

Query: 412 RKSASKLLSKM------PKDDPHVRFVIQACKQTYTIPSLQ 446
              AS+L   M      P +  +   ++  CK+  +  +L+
Sbjct: 459 MNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALK 499



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 69/161 (42%), Gaps = 1/161 (0%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I PS  +Y  LI        +  A+ +   M +  LVP   T + ++H      + N   
Sbjct: 404 IKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEAS 463

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R++  +   N +PN   + +MI    K      A  LL +++E  L P  + Y  ++   
Sbjct: 464 RLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVL 523

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI 167
            +++  + A  ++++M  + + P +   S LI    N+  +
Sbjct: 524 CKERKSKEAERLVEKMIDSGIDPSTSILS-LISRAKNDSHV 563


>gi|302821471|ref|XP_002992398.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
 gi|300139814|gb|EFJ06548.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
          Length = 698

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 130/303 (42%), Gaps = 11/303 (3%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +I P++  Y ++IT   D  +    + ++ +M Q  + P     N I++    + +    
Sbjct: 382 DIRPNTYMYARMITIYRDTGQWQKGVKLLREMQQAGVTPDAHVYNVIINTFGRTRQLEQA 441

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           R  +  +    ++P+  ++ S+I    K      A  L   +      PTA  +N ++ G
Sbjct: 442 RIAFFKMQDGGIEPDVVSWNSLIDACCKAGQPLEARKLYYKMVNDGCAPTAQTFNIVIHG 501

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQIT 182
               K       +++EM    + P+  T++ L+   +     +D ++  + +K  G   +
Sbjct: 502 LGEHKRWNDVNEMVEEMRSKGMFPNVVTYTTLVDVYAQARLFQDAVECLQTMKEDGMGPS 561

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSA----LVSALASHGRTSDAII 238
              + AL NAY   G  E+   V+   E   K   E+  A    L++A +  GR+ +A  
Sbjct: 562 PTAYSALANAYAQLGMCEQTLHVLQTME---KENIEINLAMLNLLINAFSMAGRSQEAFA 618

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILH-CVR 297
           V+E IKEAG   +      L++ L    +L+ +  + +E+       DG  + +L    R
Sbjct: 619 VFEYIKEAGLTADKITYTTLMKALIRAEKLDEVSGVFDEMIKAGCRPDGKAKDMLRSAFR 678

Query: 298 FKQ 300
           FK+
Sbjct: 679 FKE 681



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 147/319 (46%), Gaps = 23/319 (7%)

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE-EDI---IKYYEQL 174
           YNA++  Y + +D   AL  L +M+     PD  +++++I  C +   DI    + ++++
Sbjct: 179 YNALVGAYAQNRDYGKALETLSKMKTLGFPPDVVSYTHVIQACRHGVVDIYTGFRLFQEM 238

Query: 175 KSAGGQITKYVFMALINAYTTCGEFEKARQVV-----LDAEIPVKSRSEVKSALVSALAS 229
           ++ G Q+   V+  LI A   CG+  K  + +     L A   V  R    S ++S L  
Sbjct: 239 QAEGVQVDGKVYNDLIFA---CGQAHKPNEGMFFLEKLQASGLVADRDSYISLMLS-LGK 294

Query: 230 HGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC 289
           HGRT++A  + EE+K  G     +A   L+   + +G+L ++  +   + D    ++   
Sbjct: 295 HGRTAEAEALLEEMKWYGLRPNLKAYNTLLGGYSRKGQLQQIDTVKTLLRDTGMSINK-- 352

Query: 290 RLILHCVRFKQLSSAT--DLLKQLKDKFKD-DEMAMEYHFSEIFCQIATTDPPDVQIGLD 346
             I +C+     + A   D L+ L  + +D D     Y ++ +       D    Q G+ 
Sbjct: 353 --ITYCLLIDAYARAGLMDRLEALYQEMRDCDIRPNTYMYARMIT--IYRDTGQWQKGVK 408

Query: 347 LLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAF 406
           LL+ ++ + G+ P     + ++      R L++A + + + ++ G+  +V+S+  +  A 
Sbjct: 409 LLREMQ-QAGVTPDAHVYNVIINTFGRTRQLEQARIAFFKMQDGGIEPDVVSWNSLIDAC 467

Query: 407 LASGNRKSASKLLSKMPKD 425
             +G    A KL  KM  D
Sbjct: 468 CKAGQPLEARKLYYKMVND 486



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/223 (19%), Positives = 101/223 (45%), Gaps = 12/223 (5%)

Query: 33  VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92
           ++E+M    L P+ +  N++L       +   +  +  ++    +  N  T+  +I    
Sbjct: 304 LLEEMKWYGLRPNLKAYNTLLGGYSRKGQLQQIDTVKTLLRDTGMSINKITYCLLIDAYA 363

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
           +    D   +L  ++++ ++ P   MY  ++  Y      Q  + +L+EM+QA V PD+ 
Sbjct: 364 RAGLMDRLEALYQEMRDCDIRPNTYMYARMITIYRDTGQWQKGVKLLREMQQAGVTPDAH 423

Query: 153 TFSYLIHNCSN----EEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV--- 205
            ++ +I+        E+  I ++ +++  G +     + +LI+A    G+  +AR++   
Sbjct: 424 VYNVIINTFGRTRQLEQARIAFF-KMQDGGIEPDVVSWNSLIDACCKAGQPLEARKLYYK 482

Query: 206 -VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
            V D   P    ++  + ++  L  H R +D   + EE++  G
Sbjct: 483 MVNDGCAPT---AQTFNIVIHGLGEHKRWNDVNEMVEEMRSKG 522



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 84/466 (18%), Positives = 183/466 (39%), Gaps = 56/466 (12%)

Query: 5   LEITPSSASYKKLITYSC--DLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           L   P   SY  +I  +C   ++ ++    + ++M    +    +  N ++ AC ++++ 
Sbjct: 205 LGFPPDVVSYTHVIQ-ACRHGVVDIYTGFRLFQEMQAEGVQVDGKVYNDLIFACGQAHKP 263

Query: 63  NLVRRIYPMICHHNLKPNSETFRS-MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
           N        +    L  + +++ S M+SL  K      A +LL+++K   L P    YN 
Sbjct: 264 NEGMFFLEKLQASGLVADRDSYISLMLSLG-KHGRTAEAEALLEEMKWYGLRPNLKAYNT 322

Query: 122 IMAGYFRKKDVQ------------------------------GALM-----VLKEMEQAN 146
           ++ GY RK  +Q                                LM     + +EM   +
Sbjct: 323 LLGGYSRKGQLQQIDTVKTLLRDTGMSINKITYCLLIDAYARAGLMDRLEALYQEMRDCD 382

Query: 147 VKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203
           ++P++  ++ +I    +    +  +K   +++ AG     +V+  +IN +    + E+AR
Sbjct: 383 IRPNTYMYARMITIYRDTGQWQKGVKLLREMQQAGVTPDAHVYNVIINTFGRTRQLEQAR 442

Query: 204 QVVL---DAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE 260
                  D  I     S   ++L+ A    G+  +A  +Y ++   GC    +    +I 
Sbjct: 443 IAFFKMQDGGIEPDVVS--WNSLIDACCKAGQPLEARKLYYKMVNDGCAPTAQTFNIVIH 500

Query: 261 HLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCV--RFKQLSSATDLLKQLKDKFKDD 318
            L      N + +++EE+     + +      L  V  + +    A + L+ +K+     
Sbjct: 501 GLGEHKRWNDVNEMVEEMRSKGMFPNVVTYTTLVDVYAQARLFQDAVECLQTMKEDGMGP 560

Query: 319 EMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLK 378
                   +  + Q+   +       L +LQ ++ E  +  +   L+ L+ A   A   +
Sbjct: 561 SPTAYSALANAYAQLGMCEQT-----LHVLQTMEKE-NIEINLAMLNLLINAFSMAGRSQ 614

Query: 379 RAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424
            A  +++  + AGL  + ++Y  + KA + +      S +  +M K
Sbjct: 615 EAFAVFEYIKEAGLTADKITYTTLMKALIRAEKLDEVSGVFDEMIK 660


>gi|297832604|ref|XP_002884184.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330024|gb|EFH60443.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 829

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 91/439 (20%), Positives = 178/439 (40%), Gaps = 20/439 (4%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P + +Y  L+           AL V+++M +      + T N ++ A   +        +
Sbjct: 321 PGTVTYNALLQVFGKAGVYTEALSVLKEMEENNCPADSVTYNELVAAYARAGFSKEAAVV 380

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
             M+    + PN+ T+ ++I    K    D A  L   +KE   +P    YNA+++   +
Sbjct: 381 IEMMTQKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGK 440

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLKSAGGQITKYV 185
           K      + +L +M+     P+  T++ ++  C N   ++ + + + ++KS G +  +  
Sbjct: 441 KSRSNEMIKMLCDMKSNGCFPNRATWNTILALCGNKGMDKFVNRVFREMKSCGFEPDRDT 500

Query: 186 FMALINAYTTCG-EFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           F  LI+AY  CG E + ++           +     +AL++ALA  G       V  ++K
Sbjct: 501 FNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMK 560

Query: 245 EAGCNLEPRAVIALIEHLNSEGE---LNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQL 301
             G      +   +++     G    + R+ + + E      WM     L+L   + + L
Sbjct: 561 SKGFKPTETSYSLMLQCYAKGGNYLGIERIEEGINEGQIFPSWML-LRTLLLANFKCRAL 619

Query: 302 SSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSR 361
           + +       K      +M +      IF +    D  +      +LQ I ++ GL P  
Sbjct: 620 AGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAE-----GILQSIHED-GLNPDL 673

Query: 362 KCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSK 421
              + L+   V   +  +A  I K  E + L  +++SY  + K F   G  + A ++LS+
Sbjct: 674 VTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRKGLMQEAVRMLSE 733

Query: 422 MPKDDPHVRFVIQACKQTY 440
           M +        I+ C  TY
Sbjct: 734 MTERG------IRPCIFTY 746



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/183 (20%), Positives = 89/183 (48%), Gaps = 4/183 (2%)

Query: 28  HVALDVVEQMV-QGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS 86
           ++ ++ +E+ + +G++ PS   + ++L A  +        R + +   H  KP+   F S
Sbjct: 584 YLGIERIEEGINEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNS 643

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           M+S+  +   +D A  +L  + E  L P    YN++M  Y R+ +   A  +LK +E++ 
Sbjct: 644 MLSIFTRNNMYDQAEGILQSIHEDGLNPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQ 703

Query: 147 VKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203
           +KPD  +++ +I     +   ++ ++   ++   G +   + +   ++ YT  G + +  
Sbjct: 704 LKPDLVSYNTVIKGFCRKGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMYGEIE 763

Query: 204 QVV 206
            V+
Sbjct: 764 DVI 766



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/353 (20%), Positives = 141/353 (39%), Gaps = 50/353 (14%)

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR-KKDVQGALMVLKEMEQANVKPDS 151
           +   ++ A +L + +KEM   PT   YN I+  + +  +  +  L VL+EM    +K D 
Sbjct: 229 RTGKYEKAINLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLEEMRSKGLKFDE 288

Query: 152 QTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
            T S ++  C+ E    +   ++ +LKS G +     + AL+  +   G + +A  V+ +
Sbjct: 289 FTCSTVLSACAREGLLREAKDFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKE 348

Query: 209 A-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
             E    + S   + LV+A A  G + +A +V E + + G          +I+     G+
Sbjct: 349 MEENNCPADSVTYNELVAAYARAGFSKEAAVVIEMMTQKGVMPNAITYTTVIDAYGKAGK 408

Query: 268 LNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFS 327
            +  ++L   + +      GC              +   +L  L  K + +EM       
Sbjct: 409 EDEALKLFYSMKEA-----GC---------VPNTCTYNAVLSMLGKKSRSNEMI------ 448

Query: 328 EIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEY 387
           ++ C + +                    G  P+R   + +L  C N    K  + +++E 
Sbjct: 449 KMLCDMKSN-------------------GCFPNRATWNTILALCGNKGMDKFVNRVFREM 489

Query: 388 ENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQACKQTY 440
           ++ G   +  ++  +  A+   G+   ASK+  +M       R    AC  TY
Sbjct: 490 KSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEM------TRAGFNACVTTY 536



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 72/151 (47%), Gaps = 3/151 (1%)

Query: 31  LDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL 90
           L V+E+M    L     T +++L AC         +  +  +     +P + T+ +++ +
Sbjct: 273 LGVLEEMRSKGLKFDEFTCSTVLSACAREGLLREAKDFFAELKSCGYEPGTVTYNALLQV 332

Query: 91  NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD 150
             K   +  A S+L +++E N    +  YN ++A Y R    + A +V++ M Q  V P+
Sbjct: 333 FGKAGVYTEALSVLKEMEENNCPADSVTYNELVAAYARAGFSKEAAVVIEMMTQKGVMPN 392

Query: 151 SQTFSYLI---HNCSNEEDIIKYYEQLKSAG 178
           + T++ +I        E++ +K +  +K AG
Sbjct: 393 AITYTTVIDAYGKAGKEDEALKLFYSMKEAG 423


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 132/281 (46%), Gaps = 14/281 (4%)

Query: 7   ITPSSASYKKLITYSCDLLKVH---VALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           I P + +Y  LI      LK H    A +++ +M   +L PS  T + ++     S +  
Sbjct: 412 IEPDTWTYNLLID---GYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQ 468

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               +   +  + +KPN   + ++I   V+   ++ A  LL  +    ++P    YN ++
Sbjct: 469 KANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLI 528

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQ 180
            G  R K V+ A M+L +M +  +KP++ T+   I+  S   +I    +Y++ + S+G  
Sbjct: 529 IGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIV 588

Query: 181 ITKYVFMALINAYTTCGEFEKAR---QVVLDAEIPVKSRSEVKSALVSALASHGRTSDAI 237
               ++  LI  +   G   +A    + +L+  +    R+   SA++ +L+ +G+T +A+
Sbjct: 589 PNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRA--YSAIIHSLSKNGKTKEAM 646

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            V+ +  + G   +     +LI     EG++ +  QL +E+
Sbjct: 647 GVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEM 687



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 74/356 (20%), Positives = 145/356 (40%), Gaps = 60/356 (16%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P++  Y  LI   CD+     AL   + M++  L+P     ++I+H+  ++ +     
Sbjct: 587 IVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAM 646

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA-- 124
            ++       + P+   + S+IS   K  D + A  L D++    + P   +YN ++   
Sbjct: 647 GVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDY 706

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK----YYEQLKSAGGQ 180
           GY +  ++  A  +  EM    + PD   +  LI  C  E ++ K    ++E  + + G 
Sbjct: 707 GYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGS 766

Query: 181 ITKY---------------------------------VFMALINAYTTCGEFEKARQVVL 207
           ++ +                                  +  LI+AY      E+A Q+ L
Sbjct: 767 LSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFL 826

Query: 208 DAEIPVKSRSEVKSALV--SALASHGRTSD---AIIVYEEIKEAGCNLEPRAVIALIEHL 262
           D E    +R+ + + L   S L S+ +  +    I ++++++  G   +  A   +    
Sbjct: 827 DME----TRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAY 882

Query: 263 NSEGE-------LNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQL 311
             EG+       LN+   L+E +   D   D    LI H  + KQ+S+  +LL ++
Sbjct: 883 CKEGKSLEALKLLNK--SLVEGIKLEDDVFDA---LIFHLCKEKQISTVLELLSEM 933



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 89/427 (20%), Positives = 176/427 (41%), Gaps = 19/427 (4%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++TPS  +Y  LI+  C    +  A +V++QM++  + P+     +++ A  +   + + 
Sbjct: 446 KLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMA 505

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +  ++  + + P+   +  +I    + K  + A  LL D+ E  + P A  Y A +  
Sbjct: 506 IELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINL 565

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQIT 182
           Y +  ++Q A    K+M  + + P++  ++ LI    +  N  + +  ++ +   G    
Sbjct: 566 YSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPD 625

Query: 183 KYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
              + A+I++ +  G+ ++A  V L   +  V     + ++L+S     G    A  +Y+
Sbjct: 626 IRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYD 685

Query: 242 EIKEAGCNLEPRAVI--ALIEHLN--SEGELNRLIQLLEEVHDPDYWMDG--CCRLILHC 295
           E+   G N  P  V+   LI        G L    +L +E+       DG   C LI  C
Sbjct: 686 EMLHNGIN--PNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGC 743

Query: 296 VRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDEL 355
            +   L  A  L  + + K      A      + FC+        V    +L   + D+ 
Sbjct: 744 GKEGNLEKALSLFHEAQQKSVGSLSAFN-SLIDSFCKHG-----KVIEARELFDDMVDK- 796

Query: 356 GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSA 415
            L P+      L+ A   A  ++ A  ++ + E   +  N L+Y  +  ++   GNR   
Sbjct: 797 KLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKM 856

Query: 416 SKLLSKM 422
             L   M
Sbjct: 857 ISLFKDM 863



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 101/237 (42%), Gaps = 6/237 (2%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           E  P+  +Y   I   C    V  AL+V + M++  L P   T   ++    +       
Sbjct: 271 ECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEA 330

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           + I+  +    L PN  T+ ++I   +K  + + A  + D++    L      YNA++ G
Sbjct: 331 KLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGG 390

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQIT 182
             +  ++  A+ +  EM  A ++PD+ T++ LI       D+ K  E   ++K+     +
Sbjct: 391 IAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPS 450

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEI--PVKSRSEVKSALVSALASHGRTSDAI 237
            + +  LI+      + +KA + VLD  I   VK    +   L+ A     R   AI
Sbjct: 451 PFTYSVLISGLCHSSDLQKANE-VLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAI 506



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 100/216 (46%), Gaps = 13/216 (6%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P+    N+++    ++    L  ++Y  +    + P+  T+ ++I  + K+ D      +
Sbjct: 205 PTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMV 264

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-C- 161
           L ++ E    P    YNA + G  +   V  AL V K M +  + PD  T++ L+   C 
Sbjct: 265 LSEM-EKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCK 323

Query: 162 ---SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIP--VKSR 216
              S E  +I  +E + S+G    ++ + ALI+ +   G  E+A ++  D  I   +K  
Sbjct: 324 QKRSKEAKLI--FESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIK-DEMITRGLKLN 380

Query: 217 SEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP 252
               +A++  +A  G  + A+ ++ E+  AG  +EP
Sbjct: 381 VVTYNAMIGGIAKAGEMAKAMSLFNEMLMAG--IEP 414



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/264 (20%), Positives = 111/264 (42%), Gaps = 8/264 (3%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+ +  +M+   + P T T N ++    +S++      +   +    L P+  T+  +IS
Sbjct: 400 AMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLIS 459

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
                 D   A  +LD +    + P   MY  ++  Y ++   + A+ +LK M    V P
Sbjct: 460 GLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLP 519

Query: 150 DSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK---YVFMALINAYTTCGEFEKARQVV 206
           D   ++ LI      + + +    L   G +  K   + + A IN Y+  GE + A +  
Sbjct: 520 DLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYF 579

Query: 207 LDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
            D     +   + + + L+      G T +A+  ++ + E G   + RA  A+I  L+  
Sbjct: 580 KDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKN 639

Query: 266 GE----LNRLIQLLEEVHDPDYWM 285
           G+    +   ++ L+    PD ++
Sbjct: 640 GKTKEAMGVFLKFLKTGVVPDVFL 663



 Score = 39.3 bits (90), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 73/169 (43%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           S +++  LI   C   KV  A ++ + MV  +L P+  T   ++ A  ++       +++
Sbjct: 766 SLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLF 825

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
             +   N+ PN+ T+ S++    +I +     SL  D++   +   A  Y  + + Y ++
Sbjct: 826 LDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKE 885

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAG 178
                AL +L +     +K +   F  LI +   E+ I    E L   G
Sbjct: 886 GKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMG 934


>gi|356577532|ref|XP_003556878.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Glycine max]
          Length = 932

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 111/280 (39%), Gaps = 39/280 (13%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P    Y  +IT  C +  +  A+ +V QM +    P+T T   I+H    + E     
Sbjct: 525 LKPDVVLYNNIITAFCGMGNMDRAICMVRQMQKERHRPTTRTFLPIIHGFARAGEMRRAL 584

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            I+ M+      P   T+ ++I   V+ +    A ++LD++    + P    Y  +M GY
Sbjct: 585 EIFDMMRRSGCIPTVHTYNALILGLVEKRQMTKAVAILDEMNVAGVGPNEHTYTTLMQGY 644

Query: 127 FRKKD-----------------------------------VQGALMVLKEMEQANVKPDS 151
               D                                   +Q AL V KEM   N+  ++
Sbjct: 645 ASLGDTEKAFQYFTVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSAKNIPRNT 704

Query: 152 QTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
             ++ LI   +   D+ +     +Q++  G     + + + INA    G+ +KA +++ +
Sbjct: 705 FVYNILIDGWARRGDVWEAADLMQQMRKEGLLPDIHTYTSFINACCKAGDMQKATEIIQE 764

Query: 209 AEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
            E   +K   +  + L++  A       A+  +EE+K AG
Sbjct: 765 MEASGIKPNLKTYTTLINGWARASMPEKALSCFEEMKLAG 804



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/336 (19%), Positives = 143/336 (42%), Gaps = 43/336 (12%)

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           I  M+    +K N +T+  +I+  +K+KD+ +A+S+ +D  +  L P   +YN I+  + 
Sbjct: 481 ISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAFSVFEDFTKDGLKPDVVLYNNIITAFC 540

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKY 184
              ++  A+ ++++M++   +P ++TF  +IH  +   ++   ++ ++ ++ +G   T +
Sbjct: 541 GMGNMDRAICMVRQMQKERHRPTTRTFLPIIHGFARAGEMRRALEIFDMMRRSGCIPTVH 600

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
            + ALI       +  KA  ++ +  +  V       + L+   AS G T  A   +  +
Sbjct: 601 TYNALILGLVEKRQMTKAVAILDEMNVAGVGPNEHTYTTLMQGYASLGDTEKAFQYFTVL 660

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSS 303
           +  G  ++     AL++     G +   + + +E+                    K +  
Sbjct: 661 RNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSA------------------KNIPR 702

Query: 304 ATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKC 363
            T +   L D +                        DV    DL+Q ++ E GL P    
Sbjct: 703 NTFVYNILIDGWARRG--------------------DVWEAADLMQQMRKE-GLLPDIHT 741

Query: 364 LDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSY 399
               + AC  A D+++A  I +E E +G+  N+ +Y
Sbjct: 742 YTSFINACCKAGDMQKATEIIQEMEASGIKPNLKTY 777



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/309 (19%), Positives = 127/309 (41%), Gaps = 39/309 (12%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTET----INSILHACEESYEFNL 64
           PS  SY  LI     + KV  AL++ + M    +  + +T    IN  L   + +  F++
Sbjct: 457 PSVISYGCLINLYTKVGKVSKALEISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAFSV 516

Query: 65  VRRIYP------MICHHNL-------------------------KPNSETFRSMISLNVK 93
                       ++ ++N+                         +P + TF  +I    +
Sbjct: 517 FEDFTKDGLKPDVVLYNNIITAFCGMGNMDRAICMVRQMQKERHRPTTRTFLPIIHGFAR 576

Query: 94  IKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQT 153
             +   A  + D ++    +PT   YNA++ G   K+ +  A+ +L EM  A V P+  T
Sbjct: 577 AGEMRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRQMTKAVAILDEMNVAGVGPNEHT 636

Query: 154 FSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAE 210
           ++ L+    +  + E   +Y+  L++ G +I  Y + AL+ +    G  + A  V  +  
Sbjct: 637 YTTLMQGYASLGDTEKAFQYFTVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEMS 696

Query: 211 IPVKSRSE-VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN 269
                R+  V + L+   A  G   +A  + +++++ G   +     + I      G++ 
Sbjct: 697 AKNIPRNTFVYNILIDGWARRGDVWEAADLMQQMRKEGLLPDIHTYTSFINACCKAGDMQ 756

Query: 270 RLIQLLEEV 278
           +  ++++E+
Sbjct: 757 KATEIIQEM 765



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 92/484 (19%), Positives = 184/484 (38%), Gaps = 69/484 (14%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+   Y  ++ Y      +H A    E M    + PS+   +S++HA     +       
Sbjct: 282 PARKEYGLMVKYYGRRGDMHHARQTFESMRARGIEPSSHVYSSLIHAYAVGRDMEEALHC 341

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    ++    T+  ++    K+ + D+A    ++ KE      A +Y  I+  + +
Sbjct: 342 VRKMKEEGIEMTIVTYSIIVGGFAKMGNADAADHWFEEAKEKLPSLNAVIYGGIIYAHCQ 401

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYV 185
             ++  A  +++EME+  +      +  ++       NEE  +  +++LK  G   +   
Sbjct: 402 ICNMDRAEALVREMEEQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFDRLKECGFFPSVIS 461

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +  LIN YT  G+  KA ++    ++  +K   +  S L++        ++A  V+E+  
Sbjct: 462 YGCLINLYTKVGKVSKALEISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAFSVFEDFT 521

Query: 245 EAGCNLEPRAVI--ALIEHLNSEGELNRLI----QLLEEVHDPDYWM------------- 285
           + G  L+P  V+   +I      G ++R I    Q+ +E H P                 
Sbjct: 522 KDG--LKPDVVLYNNIITAFCGMGNMDRAICMVRQMQKERHRPTTRTFLPIIHGFARAGE 579

Query: 286 -------------DGCC-------RLILHCVRFKQLSSATDLLKQLKDKFKDDEMAM--- 322
                         GC         LIL  V  +Q++ A  +L         DEM +   
Sbjct: 580 MRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRQMTKAVAIL---------DEMNVAGV 630

Query: 323 ---EYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKR 379
              E+ ++ +    A+    D +        +++E GL       + LL +C  +  ++ 
Sbjct: 631 GPNEHTYTTLMQGYASLG--DTEKAFQYFTVLRNE-GLEIDVYTYEALLKSCCKSGRMQS 687

Query: 380 AHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDD------PHVRFVI 433
           A  + KE     +P N   Y  +   +   G+   A+ L+ +M K+        +  F+ 
Sbjct: 688 ALAVTKEMSAKNIPRNTFVYNILIDGWARRGDVWEAADLMQQMRKEGLLPDIHTYTSFIN 747

Query: 434 QACK 437
             CK
Sbjct: 748 ACCK 751


>gi|15220808|ref|NP_173207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75175206|sp|Q9LNP2.1|PPR47_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g17630
 gi|8778465|gb|AAF79473.1|AC022492_17 F1L3.33 [Arabidopsis thaliana]
 gi|332191495|gb|AEE29616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 731

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/317 (21%), Positives = 134/317 (42%), Gaps = 33/317 (10%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL++   M Q  L      +  IL AC     F L R  +  +    LK N      +++
Sbjct: 142 ALELYRGMRQRGLTGDGYILPLILRACRYLGRFGLCRAFHTQVIQIGLKENLHVVNELLT 201

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           L  K      AY+L  ++   N M     +N ++ G+ ++ D + A+ + + M++   KP
Sbjct: 202 LYPKAGRMGDAYNLFVEMPVRNRMS----WNVMIKGFSQEYDCESAVKIFEWMQREEFKP 257

Query: 150 DSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D  T++ ++     C   ED++KY+  ++ +G  ++     AL   ++ C E E      
Sbjct: 258 DEVTWTSVLSCHSQCGKFEDVLKYFHLMRMSGNAVSG---EALAVFFSVCAELEALSIAE 314

Query: 207 LDAEIPVKSRSE----VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
                 +K   E     ++AL+      G+  DA  ++ +I+  G      +  +LI   
Sbjct: 315 KVHGYVIKGGFEEYLPSRNALIHVYGKQGKVKDAEHLFRQIRNKGI----ESWNSLITSF 370

Query: 263 NSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAM 322
              G+L+  + L  E+ +    M+  C +  + V +      T ++K    + + D+ ++
Sbjct: 371 VDAGKLDEALSLFSELEE----MNHVCNVKANVVTW------TSVIKGCNVQGRGDD-SL 419

Query: 323 EY----HFSEIFCQIAT 335
           EY     FS++     T
Sbjct: 420 EYFRQMQFSKVLANSVT 436



 Score = 42.7 bits (99), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 39/205 (19%), Positives = 90/205 (43%), Gaps = 10/205 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           +L+   QM   +++ ++ TI  IL  C E    NL R I+  +   ++  N     ++++
Sbjct: 418 SLEYFRQMQFSKVLANSVTICCILSICAELPALNLGREIHGHVIRTSMSENILVQNALVN 477

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K         + + +++ +L+     +N+I+ GY      + AL +   M  +   P
Sbjct: 478 MYAKCGLLSEGSLVFEAIRDKDLIS----WNSIIKGYGMHGFAEKALSMFDRMISSGFHP 533

Query: 150 DSQTFSYLIHNCSNEEDIIK----YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           D      ++  CS+   + K    +Y   K  G +  +  +  +++     G  ++A ++
Sbjct: 534 DGIALVAVLSACSHAGLVEKGREIFYSMSKRFGLEPQQEHYACIVDLLGRVGFLKEASEI 593

Query: 206 VLDAEIPVKSRSEVKSALVSALASH 230
           V    +P++ +  V  AL+++   H
Sbjct: 594 V--KNMPMEPKVCVLGALLNSCRMH 616


>gi|297791025|ref|XP_002863397.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297309232|gb|EFH39656.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 711

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/268 (20%), Positives = 123/268 (45%), Gaps = 9/268 (3%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A++  E+M +  L+P   T ++IL    +  +   V  +Y        KP++  F  +  
Sbjct: 240 AIEWFERMYKTGLMPDEVTYSAILDVYSKLRKVEEVLSLYERAVATGWKPDAIAFSVLGK 299

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  +  D+D    +L ++K M++ P   +YN ++    R      A  +  EM +A + P
Sbjct: 300 MFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTP 359

Query: 150 DSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           + +T + L+         +D ++ +E++K+    +   ++  L+N     G  E+A ++ 
Sbjct: 360 NEKTLTALVKIYGKARWAKDALQLWEEMKAKKWPMDFILYNTLLNMCADIGLEEEAERLF 419

Query: 207 LDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
            D +  V+ + +  S  A+++   S G+   A+ ++EE+ EAG  +       L++ L  
Sbjct: 420 NDMKESVQCKPDNFSYTAMLNIYGSGGKAEKAMKLFEEMLEAGVQVNVMGCTCLVQCLGK 479

Query: 265 EGELNRLIQL----LEEVHDPDYWMDGC 288
              ++ L+ +    ++    PD  + GC
Sbjct: 480 AKRIDDLVYVFDLSIQRGVKPDDRLCGC 507



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/270 (20%), Positives = 119/270 (44%), Gaps = 15/270 (5%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  + P   +Y  ++     L KV   L + E+ V     P     + +     E+ +++
Sbjct: 249 KTGLMPDEVTYSAILDVYSKLRKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGDYD 308

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
            +R +   +   ++KPN   + +++    +      A SL +++ E  L P      A++
Sbjct: 309 GIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALV 368

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLK-SAGG 179
             Y + +  + AL + +EM+      D   ++ L++ C++   EE+  + +  +K S   
Sbjct: 369 KIYGKARWAKDALQLWEEMKAKKWPMDFILYNTLLNMCADIGLEEEAERLFNDMKESVQC 428

Query: 180 QITKYVFMALINAYTTCGEFEKARQV---VLDAEIPVKSRSEVKSALVSALASHGRTSDA 236
           +   + + A++N Y + G+ EKA ++   +L+A + V       + LV  L    R  D 
Sbjct: 429 KPDNFSYTAMLNIYGSGGKAEKAMKLFEEMLEAGVQVNVMG--CTCLVQCLGKAKRIDDL 486

Query: 237 IIVYEEIKEAGCNLEPR------AVIALIE 260
           + V++   + G   + R      +V+AL E
Sbjct: 487 VYVFDLSIQRGVKPDDRLCGCLLSVMALCE 516



 Score = 45.8 bits (107), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 92/204 (45%), Gaps = 6/204 (2%)

Query: 47  ETI--NSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLL 104
           ETI  N  + +     +F L+  +   +    ++ ++ T+ ++I+   +   +D A    
Sbjct: 185 ETIFYNVTMKSLRFGRQFYLIEEMALEMVKDGVELDNITYSTIITCAKRCNFYDKAIEWF 244

Query: 105 DDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYL--IHNCS 162
           + + +  LMP    Y+AI+  Y + + V+  L + +       KPD+  FS L  +   +
Sbjct: 245 ERMYKTGLMPDEVTYSAILDVYSKLRKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEA 304

Query: 163 NEEDIIKYY-EQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVK 220
            + D I+Y  +++KS   +    V+  L+ A    G+   AR +  +  E  +    +  
Sbjct: 305 GDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTL 364

Query: 221 SALVSALASHGRTSDAIIVYEEIK 244
           +ALV          DA+ ++EE+K
Sbjct: 365 TALVKIYGKARWAKDALQLWEEMK 388


>gi|357521009|ref|XP_003630793.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524815|gb|AET05269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 584

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 119/259 (45%), Gaps = 6/259 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  LI   C   ++  A +V+ +MV   + P   T N++  A  ++ E +   
Sbjct: 180 VKPNERTYNILIQAWCTKNELEEAWNVMHKMVNSGMQPDIVTYNTLARAFAQNGETDNAE 239

Query: 67  RIYPMICHHN--LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
           R+   +  +N  +KPN  T   +I    K  +   A   L  +KE+ + P   ++N+++ 
Sbjct: 240 RLILKMQQYNNKVKPNERTCGIIIRGYCKEGNMTEALRFLYKMKELGVHPNPVVFNSLIK 299

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQI 181
           GY    D  G    L  ME+  +KPD  T+S +++  S+    ++  + ++ +  A  + 
Sbjct: 300 GYLDITDTDGVEEALTLMEEFGIKPDVVTYSTIMNAWSSSGLMDNCEEIFDDMVKAEIEP 359

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
               +  L   Y   G+ +KA  ++    +  +++   + + ++S   + G+   A+ +Y
Sbjct: 360 DIQAYSILAKGYVRAGQPDKAEALLNSMTKYGLQANVVIFTTIISGWCAAGKMDCALRLY 419

Query: 241 EEIKEAGCNLEPRAVIALI 259
           E++ E G  L  +    LI
Sbjct: 420 EKMNEMGTPLNLKTYETLI 438



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/259 (21%), Positives = 115/259 (44%), Gaps = 21/259 (8%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P S  +  +I    D  KVH A+ +  +M +    P+T T N+++        F +V 
Sbjct: 109 VKPDSILFNAMINAFSDSGKVHEAMKIFRKMKECGCKPTTSTFNTLIKG------FGIVG 162

Query: 67  RIYP-------MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMY 119
           R +        MI   N+KPN  T+  +I       + + A++++  +    + P    Y
Sbjct: 163 RPHEAMKLLEMMIQDGNVKPNERTYNILIQAWCTKNELEEAWNVMHKMVNSGMQPDIVTY 222

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQAN--VKPDSQTFSYLIHN-C--SNEEDIIKYYEQL 174
           N +   + +  +   A  ++ +M+Q N  VKP+ +T   +I   C   N  + +++  ++
Sbjct: 223 NTLARAFAQNGETDNAERLILKMQQYNNKVKPNERTCGIIIRGYCKEGNMTEALRFLYKM 282

Query: 175 KSAGGQITKYVFMALINAYTTCGEFEKARQ-VVLDAEIPVKSRSEVKSALVSALASHGRT 233
           K  G      VF +LI  Y    + +   + + L  E  +K      S +++A +S G  
Sbjct: 283 KELGVHPNPVVFNSLIKGYLDITDTDGVEEALTLMEEFGIKPDVVTYSTIMNAWSSSGLM 342

Query: 234 SDAIIVYEEIKEAGCNLEP 252
            +   +++++ +A   +EP
Sbjct: 343 DNCEEIFDDMVKA--EIEP 359



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 112/255 (43%), Gaps = 7/255 (2%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S  KL++      K H A+ +   + +    P+  T  +++ A      FN +  +   +
Sbjct: 45  SRTKLMSTLIRKGKPHEAVTIFNSLTEEGHKPTIITYTTLVAALTRLKRFNSIPSLLSKV 104

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
             + +KP+S  F +MI+          A  +   +KE    PT S +N ++ G+      
Sbjct: 105 EENGVKPDSILFNAMINAFSDSGKVHEAMKIFRKMKECGCKPTTSTFNTLIKGFGIVGRP 164

Query: 133 QGALMVLKEMEQ-ANVKPDSQTFSYLIHN-CS-NE-EDIIKYYEQLKSAGGQITKYVFMA 188
             A+ +L+ M Q  NVKP+ +T++ LI   C+ NE E+      ++ ++G Q     +  
Sbjct: 165 HEAMKLLEMMIQDGNVKPNERTYNILIQAWCTKNELEEAWNVMHKMVNSGMQPDIVTYNT 224

Query: 189 LINAYTTCGEFEKARQVVLDAEI---PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
           L  A+   GE + A +++L  +     VK        ++      G  ++A+    ++KE
Sbjct: 225 LARAFAQNGETDNAERLILKMQQYNNKVKPNERTCGIIIRGYCKEGNMTEALRFLYKMKE 284

Query: 246 AGCNLEPRAVIALIE 260
            G +  P    +LI+
Sbjct: 285 LGVHPNPVVFNSLIK 299



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/215 (21%), Positives = 98/215 (45%), Gaps = 7/215 (3%)

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           I+  +     KP   T+ ++++   ++K F+S  SLL  ++E  + P + ++NA++  + 
Sbjct: 65  IFNSLTEEGHKPTIITYTTLVAALTRLKRFNSIPSLLSKVEENGVKPDSILFNAMINAFS 124

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGG-QITK 183
               V  A+ + ++M++   KP + TF+ LI          + +K  E +   G  +  +
Sbjct: 125 DSGKVHEAMKIFRKMKECGCKPTTSTFNTLIKGFGIVGRPHEAMKLLEMMIQDGNVKPNE 184

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             +  LI A+ T  E E+A  V+       ++      + L  A A +G T +A  +  +
Sbjct: 185 RTYNILIQAWCTKNELEEAWNVMHKMVNSGMQPDIVTYNTLARAFAQNGETDNAERLILK 244

Query: 243 IKEAGCNLEP--RAVIALIEHLNSEGELNRLIQLL 275
           +++    ++P  R    +I     EG +   ++ L
Sbjct: 245 MQQYNNKVKPNERTCGIIIRGYCKEGNMTEALRFL 279



 Score = 41.6 bits (96), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 29/150 (19%), Positives = 73/150 (48%), Gaps = 1/150 (0%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  L+     L + +    ++ ++ +  + P +   N++++A  +S + +   +I
Sbjct: 76  PTIITYTTLVAALTRLKRFNSIPSLLSKVEENGVKPDSILFNAMINAFSDSGKVHEAMKI 135

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL-KEMNLMPTASMYNAIMAGYF 127
           +  +     KP + TF ++I     +     A  LL+ + ++ N+ P    YN ++  + 
Sbjct: 136 FRKMKECGCKPTTSTFNTLIKGFGIVGRPHEAMKLLEMMIQDGNVKPNERTYNILIQAWC 195

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYL 157
            K +++ A  V+ +M  + ++PD  T++ L
Sbjct: 196 TKNELEEAWNVMHKMVNSGMQPDIVTYNTL 225


>gi|224083253|ref|XP_002306972.1| predicted protein [Populus trichocarpa]
 gi|222856421|gb|EEE93968.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 77/153 (50%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P + ++  LI   C   K   A ++ E+M++G   P   T N ++++  +   ++ V+
Sbjct: 476 IEPDTVTWNTLIDCHCRAGKHDRAEELFEEMMEGGYSPCNTTFNIMINSFGDQERWDDVK 535

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +    L PNS T+ ++I +  K   F+ A   LDD+K   L P+++MYNA++  Y
Sbjct: 536 NLLAHMRSQGLVPNSVTYTTLIDIYGKSGRFNDAIECLDDMKAAGLKPSSTMYNALINAY 595

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159
            ++   + A+   + M    +KP     + LI+
Sbjct: 596 AQRGLSEQAVSAFRAMRVDGLKPSLLALNSLIN 628



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 95/190 (50%), Gaps = 8/190 (4%)

Query: 100 AYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI- 158
           A ++ +++++  L P    YNA++ GY +   ++ A  V+ EME++ V P+ QT+S+LI 
Sbjct: 324 AEAIFEEMRDNGLKPRTRAYNALLRGYVKAGLLKDAEFVVSEMERSGVSPNEQTYSFLID 383

Query: 159 --HNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAE-IPVKS 215
              N    E      ++++++  Q   YVF  ++++Y   GE++K+ QV+ + E   V+ 
Sbjct: 384 AYGNAGRWESARIVLKEMEASNVQPNAYVFSRILSSYRDKGEWQKSFQVLREMENSGVRP 443

Query: 216 RSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQ 273
                + ++           A+  ++ +   G  +EP  V    LI+     G+ +R  +
Sbjct: 444 DRVFYNVMIDTFGKFNCLDHAMATFDRMLSEG--IEPDTVTWNTLIDCHCRAGKHDRAEE 501

Query: 274 LLEEVHDPDY 283
           L EE+ +  Y
Sbjct: 502 LFEEMMEGGY 511



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/254 (20%), Positives = 114/254 (44%), Gaps = 12/254 (4%)

Query: 33  VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92
           + E+M    L P T   N++L    ++        +   +    + PN +T+  +I    
Sbjct: 327 IFEEMRDNGLKPRTRAYNALLRGYVKAGLLKDAEFVVSEMERSGVSPNEQTYSFLIDAYG 386

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
               ++SA  +L +++  N+ P A +++ I++ Y  K + Q +  VL+EME + V+PD  
Sbjct: 387 NAGRWESARIVLKEMEASNVQPNAYVFSRILSSYRDKGEWQKSFQVLREMENSGVRPDRV 446

Query: 153 TFSYLI-----HNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVL 207
            ++ +I      NC +    +  ++++ S G +     +  LI+ +   G+ ++A ++  
Sbjct: 447 FYNVMIDTFGKFNCLDHA--MATFDRMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEELFE 504

Query: 208 D-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV--IALIEHLNS 264
           +  E      +   + ++++     R  D   +   ++  G  L P +V    LI+    
Sbjct: 505 EMMEGGYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQG--LVPNSVTYTTLIDIYGK 562

Query: 265 EGELNRLIQLLEEV 278
            G  N  I+ L+++
Sbjct: 563 SGRFNDAIECLDDM 576



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 47/229 (20%), Positives = 99/229 (43%), Gaps = 4/229 (1%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+   ++M+   + P T T N+++     + + +    ++  +      P + TF  MI+
Sbjct: 464 AMATFDRMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEELFEEMMEGGYSPCNTTFNIMIN 523

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
                + +D   +LL  ++   L+P +  Y  ++  Y +      A+  L +M+ A +KP
Sbjct: 524 SFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKSGRFNDAIECLDDMKAAGLKP 583

Query: 150 DSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
            S  ++ LI+  +     E  +  +  ++  G + +     +LINA+       +A  V+
Sbjct: 584 SSTMYNALINAYAQRGLSEQAVSAFRAMRVDGLKPSLLALNSLINAFGEDRRDAEAFTVL 643

Query: 207 -LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRA 254
               E  +K      + L+ AL    +      VYEE+  +GC  + +A
Sbjct: 644 QYMKENDLKPDVVTYTTLMKALIRVEKFDKVPSVYEEMILSGCTPDRKA 692



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 12/169 (7%)

Query: 108 KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH-----NCS 162
           +  NL P    YNA+++   R  D++ AL ++  M Q     D   +S +I      N  
Sbjct: 192 QRQNLTPLT--YNALISACARNNDLEKALNLITRMRQDGYPSDFVNYSLIIRSLMRKNRV 249

Query: 163 NEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ---VVLDAEIPVKSRSEV 219
           +   + K Y +++    ++   +   +I  +   G+  KA +   VV  + + VK+ + V
Sbjct: 250 DSAILQKLYREIECDKLELDVQLSNDIIVGFAKAGDLSKALEFLGVVQGSGLSVKTATLV 309

Query: 220 KSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGEL 268
             A++ AL + GRT +A  ++EE+++ G     RA  AL+      G L
Sbjct: 310 --AVIWALGNCGRTVEAEAIFEEMRDNGLKPRTRAYNALLRGYVKAGLL 356


>gi|224097576|ref|XP_002310993.1| predicted protein [Populus trichocarpa]
 gi|222850813|gb|EEE88360.1| predicted protein [Populus trichocarpa]
          Length = 877

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/373 (19%), Positives = 169/373 (45%), Gaps = 22/373 (5%)

Query: 31  LDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL 90
           L V +++ +    PS  +   +++   +  + +    +  M+    +K N +T+  +I+ 
Sbjct: 433 LIVFKRLKECGFAPSVISYGCLINMYTKMGKVSKALEVSKMMESAGIKHNMKTYSMLING 492

Query: 91  NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD 150
            +K+KD+ +A+++ +D+ +  L P   +YN I+  +    ++  A+ ++KEM++   +P 
Sbjct: 493 FLKLKDWTNAFTVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKKRHRPT 552

Query: 151 SQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVL 207
           S+TF  +IH  +   ++   ++ ++ ++ +G   T + F AL+       + EKA +++ 
Sbjct: 553 SRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRQMEKAVEILD 612

Query: 208 DAEIPVKSRSE-VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
           +  +   S  E   + +++  A+ G T  A   + +++  G  L+     AL++     G
Sbjct: 613 EMALAGVSPDEHTYTTIMNGYAALGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSG 672

Query: 267 ELNRLIQLLEEVHDPDYWMDGCCRLIL--HCVRFKQLSSATDLLKQLKDKFKDDEMAMEY 324
            +   + +  E+   +   +     IL     R   +  A DL++Q+K +    ++    
Sbjct: 673 RMQSALAVTREMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDIHTYT 732

Query: 325 HFSEIFCQIATTDPPDVQIGLDLLQFIK-----DELGLPPSRKCLDFLLGACVNARDLKR 379
            F    C+             D+L+  K     + LG+ P+ K    L+     A   ++
Sbjct: 733 SFINACCKAG-----------DMLRATKTIQEMEALGVKPNVKTYTTLIHGWACASLPEK 781

Query: 380 AHLIWKEYENAGL 392
           A   ++E + AGL
Sbjct: 782 ALRCFEEMKLAGL 794



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/280 (20%), Positives = 110/280 (39%), Gaps = 39/280 (13%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P    Y  +I   C +  +  A+ +V++M +    P++ T   I+H    + E     
Sbjct: 514 LKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKKRHRPTSRTFMPIIHGFARAGEMRRAL 573

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            I+ M+      P   TF +++   V+ +  + A  +LD++    + P    Y  IM GY
Sbjct: 574 EIFDMMRRSGCIPTVHTFNALVLGLVEKRQMEKAVEILDEMALAGVSPDEHTYTTIMNGY 633

Query: 127 FRKKD-----------------------------------VQGALMVLKEMEQANVKPDS 151
               D                                   +Q AL V +EM   N+  ++
Sbjct: 634 AALGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTREMSAQNIPRNT 693

Query: 152 QTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
             ++ LI   +   D+ +     +Q+K  G Q   + + + INA    G+  +A + + +
Sbjct: 694 FVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDIHTYTSFINACCKAGDMLRATKTIQE 753

Query: 209 AE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
            E + VK   +  + L+   A       A+  +EE+K AG
Sbjct: 754 MEALGVKPNVKTYTTLIHGWACASLPEKALRCFEEMKLAG 793



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 87/458 (18%), Positives = 178/458 (38%), Gaps = 46/458 (10%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+   +  ++ Y      +H A    E M    + PS+    S++HA     +       
Sbjct: 300 PARREFGLMVGYYARRGDMHRARQTFESMRVRGIYPSSHVYTSLIHAYAVGRDMEEALSC 359

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKD------FDSAYSLLDDLKEMNLMPTASMYNAI 122
              +    ++ +  T+  ++    KI +       D A SL+ +++E  +     +Y+ +
Sbjct: 360 VRKMKEEGVEMSLVTYSIVVGGFAKIGNADQSCNMDRAESLVREMEEEGIDAPIDIYHTM 419

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGG 179
           M GY    + +  L+V K +++    P   ++  LI+  +    + K  E    ++SAG 
Sbjct: 420 MNGYTMIGNEEKCLIVFKRLKECGFAPSVISYGCLINMYTKMGKVSKALEVSKMMESAGI 479

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAII 238
           +     +  LIN +    ++  A  V  D  +  +K    + + ++ A    G    AI 
Sbjct: 480 KHNMKTYSMLINGFLKLKDWTNAFTVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIH 539

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC-------RL 291
           + +E+++       R  + +I      GE+ R +++ + +        GC         L
Sbjct: 540 MVKEMQKKRHRPTSRTFMPIIHGFARAGEMRRALEIFDMMRR-----SGCIPTVHTFNAL 594

Query: 292 ILHCVRFKQLSSATDLLKQLKDKFKDDEMAM------EYHFSEIFCQIATTDPPDVQIGL 345
           +L  V  +Q+  A ++L         DEMA+      E+ ++ I    A     D     
Sbjct: 595 VLGLVEKRQMEKAVEIL---------DEMALAGVSPDEHTYTTIMNGYAALG--DTGKAF 643

Query: 346 DLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKA 405
           +    +++E GL       + LL AC  +  ++ A  + +E     +P N   Y  +   
Sbjct: 644 EYFTKLRNE-GLELDVFTYEALLKACCKSGRMQSALAVTREMSAQNIPRNTFVYNILIDG 702

Query: 406 FLASGNRKSASKLLSKM------PKDDPHVRFVIQACK 437
           +   G+   A+ L+ +M      P    +  F+   CK
Sbjct: 703 WARRGDVWEAADLMQQMKQEGVQPDIHTYTSFINACCK 740



 Score = 41.6 bits (96), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 29/159 (18%), Positives = 66/159 (41%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y+ L+   C   ++  AL V  +M    +  +T   N ++       +      +   +
Sbjct: 660 TYEALLKACCKSGRMQSALAVTREMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQM 719

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               ++P+  T+ S I+   K  D   A   + +++ + + P    Y  ++ G+      
Sbjct: 720 KQEGVQPDIHTYTSFINACCKAGDMLRATKTIQEMEALGVKPNVKTYTTLIHGWACASLP 779

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY 171
           + AL   +EM+ A +KPD   +  L+ +  +   + + Y
Sbjct: 780 EKALRCFEEMKLAGLKPDKAVYHCLMTSLLSRATVAEAY 818



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 56/333 (16%), Positives = 143/333 (42%), Gaps = 30/333 (9%)

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
           H   + +++ FR +  L+ + +++ +  S  + +K+    P    +  ++  Y R+ D+ 
Sbjct: 266 HEEREGSTKAFRKV--LDTQPENWQAVVSAFERIKK----PARREFGLMVGYYARRGDMH 319

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHNCS---NEEDIIKYYEQLKSAGGQITKYVFMALI 190
            A    + M    + P S  ++ LIH  +   + E+ +    ++K  G +++   +  ++
Sbjct: 320 RARQTFESMRVRGIYPSSHVYTSLIHAYAVGRDMEEALSCVRKMKEEGVEMSLVTYSIVV 379

Query: 191 NAYTTCG------EFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
             +   G        ++A  +V +  E  + +  ++   +++     G     +IV++ +
Sbjct: 380 GGFAKIGNADQSCNMDRAESLVREMEEEGIDAPIDIYHTMMNGYTMIGNEEKCLIVFKRL 439

Query: 244 KEAGCNLEPRAVI--ALIEHLNSEGELNRLIQL--LEEVHDPDYWMDGCCRLILHCVRFK 299
           KE  C   P  +    LI      G++++ +++  + E     + M     LI   ++ K
Sbjct: 440 KE--CGFAPSVISYGCLINMYTKMGKVSKALEVSKMMESAGIKHNMKTYSMLINGFLKLK 497

Query: 300 QLSSATDLLKQ-LKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLP 358
             ++A  + +  +KD  K D + +  +  + FC +   D       + +++ ++ +   P
Sbjct: 498 DWTNAFTVFEDVIKDGLKPD-VVLYNNIIKAFCGMGNMDR-----AIHMVKEMQKKRHRP 551

Query: 359 PSRKCLDFLLGACVNARDLKRAHLIWKEYENAG 391
            SR  +  + G    A +++RA  I+     +G
Sbjct: 552 TSRTFMPIIHG-FARAGEMRRALEIFDMMRRSG 583


>gi|125548275|gb|EAY94097.1| hypothetical protein OsI_15870 [Oryza sativa Indica Group]
          Length = 554

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 118/255 (46%), Gaps = 21/255 (8%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGE-LVPSTETINSILHA-CEES----Y 60
           + P+  ++  LI   C +     A  +  ++++     P+  T   ++   C E      
Sbjct: 274 LKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARA 333

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           E  LVR +        LKPN+ T+ ++I  + K   FD A+ L++ +K+   +P    YN
Sbjct: 334 EMLLVRMV-----EQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYN 388

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSA 177
           A++ G+ +K  +Q A  VL+      +K D  T++ LI     +  I   +  ++++   
Sbjct: 389 AVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVEN 448

Query: 178 GGQITKYVFMALINAYTTCGEFEKAR----QVVLDAEIPVKSRSEVKSALVSALASHGRT 233
           G       + +LI+ Y    + E+++    + ++   +P K   +  +++++     GR+
Sbjct: 449 GCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTK---QTYTSMIAGYCKVGRS 505

Query: 234 SDAIIVYEEIKEAGC 248
           + A+ V+E + + GC
Sbjct: 506 TMALRVFERMVQNGC 520



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 88/189 (46%), Gaps = 5/189 (2%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSL-LDDLKEMNLMPTASMYNAIMAGYFRKKDVQG 134
            LKPN  T  ++I    KI   + A+ L L  +K  +  P    Y  ++ GY R+  +  
Sbjct: 273 GLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLAR 332

Query: 135 ALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKYVFMALIN 191
           A M+L  M +  +KP++ T++ LI          + +E   ++K  G     Y + A+I+
Sbjct: 333 AEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVID 392

Query: 192 AYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNL 250
            +   G+ ++A +V+ +     +K      + L++     G  + A+ +++ + E GC  
Sbjct: 393 GFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCP 452

Query: 251 EPRAVIALI 259
           +  A  +LI
Sbjct: 453 DIEAYTSLI 461



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 63/325 (19%), Positives = 126/325 (38%), Gaps = 44/325 (13%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A D+V +M    L    ET N +L    E+  F   R+++  +    + P+  +FR+++ 
Sbjct: 122 AADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAGVCPDERSFRALVV 181

Query: 90  LNV---KIKDFDS--------AYSL------------------------LDDLKEMNLMP 114
           +     K+++ D+         +SL                           + EM   P
Sbjct: 182 VCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLEMGTPP 241

Query: 115 TASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CS---NEEDIIKY 170
               Y A + G  +++ V+ A  VL+EM    +KP+  T + LI   C     E     +
Sbjct: 242 NVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLF 301

Query: 171 YEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALAS 229
            + +KS+  +   + +  +I  Y   G+  +A  +++   E  +K  +   + L+     
Sbjct: 302 LKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCK 361

Query: 230 HGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC 289
            G    A  +  ++K+ G         A+I+    +G++    ++L          D   
Sbjct: 362 GGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKIT 421

Query: 290 RLIL---HCVRFKQLSSATDLLKQL 311
             IL   HC +   ++ A DL  ++
Sbjct: 422 YTILITEHC-KQGHITYALDLFDRM 445


>gi|401398381|ref|XP_003880292.1| pentatricopeptide repeat-containing protein At5g55840, related
            [Neospora caninum Liverpool]
 gi|325114702|emb|CBZ50258.1| pentatricopeptide repeat-containing protein At5g55840, related
            [Neospora caninum Liverpool]
          Length = 1844

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 54/261 (20%), Positives = 126/261 (48%), Gaps = 10/261 (3%)

Query: 7    ITPSSASYKKLITYSCDLLKVHVALDVVEQMV-QGELVPSTETINSILHACEESYEFNLV 65
            + P++ +Y  +        +V  AL++ E+M  +G+++P+T   ++I+    +S + +  
Sbjct: 987  LQPNAVAYGCMYDALVSNGRVVEALELFEEMKREGQVLPNTIMYSTIIKGFAQSKQLDKA 1046

Query: 66   RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             ++Y  +  + +  N  TF S++    ++   D A  LL+D+    + P    ++ I+ G
Sbjct: 1047 LKMYAEMQQNGVAINIVTFNSIVDACARVGAMDKAAMLLEDMLSQGIKPDLITFSTIIKG 1106

Query: 126  YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC--SNEEDIIKY-YEQLKSAGGQIT 182
            Y    ++  AL +LK M +  +KPD   ++ L+  C  +    + +Y +E+++      +
Sbjct: 1107 YCVHGEMNKALHLLKAMRERQIKPDGVLYNSLLDGCVKTGRVSLCEYLWEEMQREEIPPS 1166

Query: 183  KYVFMALINAYTTCGEFEKARQVVLDAEIPVKS----RSEVKSALVSALASHGRTSDAII 238
             +    LI  +    + +KA ++V   E+P K      + V + L++A   +   S A+ 
Sbjct: 1167 NFTLTILIKMHGRLYQLQKAFELV--KELPRKYGFTINAHVYTCLMAACIVNREYSLALE 1224

Query: 239  VYEEIKEAGCNLEPRAVIALI 259
            VY+ ++      +P+ +  ++
Sbjct: 1225 VYDCMERNAVRGDPKTLTTIV 1245



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 90/209 (43%), Gaps = 4/209 (1%)

Query: 1    MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
            M  + ++ P++  Y  +I       ++  AL +  +M Q  +  +  T NSI+ AC    
Sbjct: 1017 MKREGQVLPNTIMYSTIIKGFAQSKQLDKALKMYAEMQQNGVAINIVTFNSIVDACARVG 1076

Query: 61   EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
              +    +   +    +KP+  TF ++I       + + A  LL  ++E  + P   +YN
Sbjct: 1077 AMDKAAMLLEDMLSQGIKPDLITFSTIIKGYCVHGEMNKALHLLKAMRERQIKPDGVLYN 1136

Query: 121  AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA--- 177
            +++ G  +   V     + +EM++  + P + T + LI        + K +E +K     
Sbjct: 1137 SLLDGCVKTGRVSLCEYLWEEMQREEIPPSNFTLTILIKMHGRLYQLQKAFELVKELPRK 1196

Query: 178  -GGQITKYVFMALINAYTTCGEFEKARQV 205
             G  I  +V+  L+ A     E+  A +V
Sbjct: 1197 YGFTINAHVYTCLMAACIVNREYSLALEV 1225


>gi|356526063|ref|XP_003531639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like isoform 1 [Glycine max]
 gi|356526065|ref|XP_003531640.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like isoform 2 [Glycine max]
          Length = 522

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 148/340 (43%), Gaps = 31/340 (9%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELV-PSTETINSILHA-C---EESYE 61
            +P+  S    ++    L +  +AL    ++ +   V P+  T+N I+ A C   E    
Sbjct: 185 FSPTVQSCNAFLSSLLRLRRADIALAFYREIRRRSCVSPNVYTLNMIIRAYCMLGEVQKG 244

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
           F+++ ++  M     L PN  +F ++IS       F  A  +   + E  + P    +N 
Sbjct: 245 FDMLEKMMDM----GLSPNVVSFNTLISGYCNKGLFGLALKVKSLMVENGVQPNVVTFNT 300

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAG 178
           ++ G+ +++ +  A  V  EM+ ANV P   T++ L++      + E  ++ YE++   G
Sbjct: 301 LINGFCKERKLHEANRVFNEMKVANVDPSVVTYNTLLNGYGQVGDSEMGVRVYEEMMRNG 360

Query: 179 GQITKYVFMALINAYTTCGEFEKARQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDA 236
            +     + ALI      G+ +KA   V  LD E  V + S   SAL++       +  A
Sbjct: 361 LKADILTYNALILGLCKDGKTKKAAGFVRELDKENLVPNASTF-SALITGQCVRNNSERA 419

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHL----NSEGELNRLIQLLEEVHDPDY-----WMDG 287
            ++Y  +  +GC+   +    LI       + +G +  L  +L  +  PD        DG
Sbjct: 420 FLIYRSMVRSGCSPNGQTFQMLISAFCKNEDFDGAVQVLRDMLGRLMSPDLSTMSELCDG 479

Query: 288 CCRLILHCVRFK---QLSSATDLLKQLKDKFKDDEMAMEY 324
            CR    C + +    L S  ++ + L D F  +++A+ +
Sbjct: 480 LCR----CGKNQLALALCSEMEVRRLLPDGFDKEKIAITH 515


>gi|9755886|emb|CAC01940.1| 67kD chloroplastic RNA-binding protein, P67.1 [Raphanus sativus]
          Length = 700

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/405 (19%), Positives = 177/405 (43%), Gaps = 28/405 (6%)

Query: 7   ITPSSASYKKLITYS--CDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           + P +A++  LI+ +  C L K   A++  E+M    L P   T+ +++ A   +    +
Sbjct: 204 VKPDNATFTTLISCARQCGLPKR--AVEWFEKMPSFGLEPDNVTLAAMIDAYGRAGNVEM 261

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
              +Y        + +  TF ++I +     ++D   ++ +++K + + P   +YN ++ 
Sbjct: 262 ALSLYDRARTEKWRIDPVTFSTLIRIYGYAGNYDGCLNIYEEMKSLGVKPNLVIYNRLLD 321

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQI 181
              + K    A M+ K++     +P+  T++ LI         ED +  Y Q+K  G ++
Sbjct: 322 SMGKAKRPWQATMIHKDLISNGFEPNWSTYAALIRAYGRARYGEDALVIYRQMKGKGLEL 381

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLD--AEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
           T  ++  L++     G  ++A ++  D  +    +  S   S+L++  +  GR S+A   
Sbjct: 382 TVILYNTLLSMCADIGYVDEAFEIFQDMKSSGTCEPDSWTFSSLITVYSCCGRVSEAEAA 441

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDYWMDGCCRLILHC 295
             E++EAG       + +LI+      +++ +++  E+V     +PD    GC   ++  
Sbjct: 442 LREMREAGFEPTLFVLTSLIQCYGKAKQVDDVVRTFEQVLELGIEPDDRFCGCLLNVMTQ 501

Query: 296 VRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDEL 355
              +++    + +++ K K       ++    E  C+         +        + D +
Sbjct: 502 TPTEEIGKLIECVEKAKPKLG---RVVKMLVEEENCEEGVLKKEASE--------LIDSI 550

Query: 356 GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYL 400
           G   ++  L+ L+  CVN   L++A  I +     GL Y++ S L
Sbjct: 551 GSDVNKAYLNCLIDLCVNLNKLEKACEILQ----LGLEYDIYSGL 591



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 10/177 (5%)

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTAS--MYNAIMAGYFRKKDVQGALMVLKEME 143
           ++++LN  + + ++A  +L++L E  L PT    +YN  M  + + KD++ +  +  EM 
Sbjct: 143 AVVTLN-NMTNPETAPLVLNNLLE-TLKPTREVILYNVTMKVFRKSKDLEKSEKLFDEML 200

Query: 144 QANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFE 200
           Q  VKPD+ TF+ LI     C   +  ++++E++ S G +       A+I+AY   G  E
Sbjct: 201 QRGVKPDNATFTTLISCARQCGLPKRAVEWFEKMPSFGLEPDNVTLAAMIDAYGRAGNVE 260

Query: 201 KARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI 256
            A  +   A         V  S L+      G     + +YEE+K  G  ++P  VI
Sbjct: 261 MALSLYDRARTEKWRIDPVTFSTLIRIYGYAGNYDGCLNIYEEMKSLG--VKPNLVI 315


>gi|387219093|gb|AFJ69255.1| hypothetical protein NGATSA_2006000, partial [Nannochloropsis
           gaditana CCMP526]
          Length = 479

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 91/204 (44%), Gaps = 4/204 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P++ +Y  L+T   +   +  A  V+++MVQ  L P T T N+++ A     E     
Sbjct: 26  LKPNAITYNSLLTAYTNAGDMAGAQQVLKRMVQAGLSPDTYTFNTLIAAFVARREVRAAE 85

Query: 67  RIYPMICHHNLKPNSETFRSMI-SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           ++   +  H +  +  T+  ++     K  D   A  +L+ +    + P +  YN ++ G
Sbjct: 86  KMVAYMQEHGVLADVVTYSQLLQGYATKEGDMGKAEEVLERMARDGVAPNSYTYNYLIEG 145

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQIT 182
           Y +  ++  A  VL+ M    + P S  +  L+   +   D     K  +++K  G Q  
Sbjct: 146 YVKAGEMDWAEDVLERMRTVGLAPTSMNYCVLMDAYTRRRDARGAEKILDRMKKEGVQAN 205

Query: 183 KYVFMALINAYTTCGEFEKARQVV 206
             VF  L+NAY   G+ E A  V+
Sbjct: 206 VQVFTTLMNAYAKRGDVEGAEGVL 229



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 101/201 (50%), Gaps = 13/201 (6%)

Query: 40  GELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDS 99
           G L P+  T NS+L A   + +    +++   +    L P++ TF ++I+  V  ++  +
Sbjct: 24  GNLKPNAITYNSLLTAYTNAGDMAGAQQVLKRMVQAGLSPDTYTFNTLIAAFVARREVRA 83

Query: 100 AYSLLDDLKEMNLMPTASMYNAIMAGYFRKK-DVQGALMVLKEMEQANVKPDSQTFSYLI 158
           A  ++  ++E  ++     Y+ ++ GY  K+ D+  A  VL+ M +  V P+S T++YLI
Sbjct: 84  AEKMVAYMQEHGVLADVVTYSQLLQGYATKEGDMGKAEEVLERMARDGVAPNSYTYNYLI 143

Query: 159 HNCSN------EEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD--AE 210
                       ED++   E++++ G   T   +  L++AYT   +   A + +LD   +
Sbjct: 144 EGYVKAGEMDWAEDVL---ERMRTVGLAPTSMNYCVLMDAYTRRRDARGAEK-ILDRMKK 199

Query: 211 IPVKSRSEVKSALVSALASHG 231
             V++  +V + L++A A  G
Sbjct: 200 EGVQANVQVFTTLMNAYAKRG 220



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 93/210 (44%), Gaps = 19/210 (9%)

Query: 13  SYKKLI-TYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPM 71
           +Y +L+  Y+     +  A +V+E+M +  + P++ T N ++    ++ E +    +   
Sbjct: 102 TYSQLLQGYATKEGDMGKAEEVLERMARDGVAPNSYTYNYLIEGYVKAGEMDWAEDVLER 161

Query: 72  ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131
           +    L P S  +  ++    + +D   A  +LD +K+  +     ++  +M  Y ++ D
Sbjct: 162 MRTVGLAPTSMNYCVLMDAYTRRRDARGAEKILDRMKKEGVQANVQVFTTLMNAYAKRGD 221

Query: 132 VQGALMVLKEM------EQANVK---PDSQTFSYLIHN------CSNEEDIIKYYEQLKS 176
           V+GA  VL  M      E    K   P+  T+S L++        +  E ++    ++ +
Sbjct: 222 VEGAEGVLARMLAVAEEEGGGSKDCEPNVHTYSTLMNVYARAGLAAGAEGVLT---RMTA 278

Query: 177 AGGQITKYVFMALINAYTTCGEFEKARQVV 206
           AG       F  L+ AY+  G+ E A  V+
Sbjct: 279 AGWAPNVITFTTLMTAYSRAGDPEGAELVL 308



 Score = 46.6 bits (109), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 41/85 (48%)

Query: 78  KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALM 137
           +PN  T+ +++++  +      A  +L  +      P    +  +M  Y R  D +GA +
Sbjct: 247 EPNVHTYSTLMNVYARAGLAAGAEGVLTRMTAAGWAPNVITFTTLMTAYSRAGDPEGAEL 306

Query: 138 VLKEMEQANVKPDSQTFSYLIHNCS 162
           VLK ME A V P+  T++ L+   S
Sbjct: 307 VLKRMEAAGVSPNVLTYNTLLSATS 331


>gi|357490167|ref|XP_003615371.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355516706|gb|AES98329.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 765

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 89/389 (22%), Positives = 168/389 (43%), Gaps = 55/389 (14%)

Query: 25  LKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETF 84
           ++V V + + E  VQ    P+  T+ S L  C E     L  +++ +      + N    
Sbjct: 262 VRVFVEMLLDEVQVQ----PNEYTLTSALSQCCEVKCLELGIQVHALCTKLGYESNLRVR 317

Query: 85  RSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQG---------- 134
            S++ L +K      A  L   + ++NL+     +NA++AG+ +  ++            
Sbjct: 318 NSLLYLYLKCGCIVEAQRLFKGMNDVNLVT----WNAMIAGHAQMMELSKDNLSAYQKGI 373

Query: 135 -ALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMA----- 188
            AL +  ++ ++ +KPD  TFS ++  CS     +   EQ +    +  K  F++     
Sbjct: 374 EALNLFSKLNRSGMKPDPFTFSSVLSVCSK----MMALEQGEQIHARTIKTGFLSDVVVG 429

Query: 189 --LINAYTTCGEFEKARQVVLDAEIPVKSRSEV-KSALVSALASHGRTSDAIIVYEEIKE 245
             +IN Y  CG  E+A +V L+  I    R+ +  + +++  A HG +  A+ ++E++K 
Sbjct: 430 SSMINMYNKCGSIERASKVFLEMSI----RTMILWTTMITGFAQHGWSKQALNLFEDMKL 485

Query: 246 AGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY----WMDGCCRLILHCVRFKQL 301
            G        + ++    S G +N       E+   +Y     MD    L+   VR  Q+
Sbjct: 486 VGIRPNLVTFVGVLSACGSAGMVNEAFNYF-EIMQKEYKIKPVMDHYVCLVDMLVRLGQV 544

Query: 302 SSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS- 360
             A DL+K++      D  A E+ +S +   +      ++++G D  + +   L L P  
Sbjct: 545 QEAFDLIKKM------DYKASEFIWSNLI--VGCLSQGNLELGCDAAEKL---LSLKPKD 593

Query: 361 RKCLDFLLGACVNAR---DLKRAHLIWKE 386
            +    LL A V+A    D+ R   I +E
Sbjct: 594 TETYKLLLNAYVSAGRYDDVSRVENIMRE 622


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 97/210 (46%), Gaps = 8/210 (3%)

Query: 79  PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMV 138
           P+   F  +I+   + K  D A+S+L+        P    YN  + G  + + V  A  +
Sbjct: 39  PDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQL 98

Query: 139 LKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTT 195
           LK+M++    P + T++ L+         ++ +   EQ+   G   T   +  +I+  + 
Sbjct: 99  LKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSK 158

Query: 196 CGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC--NLEP 252
            G  E+AR++ +D      +  + V +AL+S LA  G+  +A++   ++ E GC   +EP
Sbjct: 159 AGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEP 218

Query: 253 RAVI--ALIEHLNSEGELNRLIQLLEEVHD 280
             VI   +I  L + G L   +   +E+ D
Sbjct: 219 DVVIHNLVIRQLCASGNLEDALAYFDELDD 248



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 93/204 (45%), Gaps = 8/204 (3%)

Query: 83  TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM 142
           TF  +++   K +  + A + +  + E    PT   Y +++ G+ +   +  AL+ LKE 
Sbjct: 256 TFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEA 315

Query: 143 EQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEF 199
            +    PD+ T++ +I         E+  + + ++++ G +     + ALI+ +      
Sbjct: 316 VERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMI 375

Query: 200 EKARQV---VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI 256
            KA +V   +L +   V + +   + ++  L   GR ++A   +  ++E GC        
Sbjct: 376 PKAHRVYRQMLQSGTVVSTVT--YNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYS 433

Query: 257 ALIEHLNSEGELNRLIQLLEEVHD 280
           AL++   SEG ++  ++L   + D
Sbjct: 434 ALMDGFCSEGNVSAAVELFRRMLD 457



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 99/225 (44%), Gaps = 19/225 (8%)

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
           K    D A  LLD   EM   P    +  ++ G  R+K +  A  VL+   +A  +PD  
Sbjct: 21  KTGQLDRAMLLLD---EMPCSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYV 77

Query: 153 TFSYLIHNCSNEEDIIKYYEQLKSAGGQ---ITKYVFMALINAYTTCGEFEKARQVVLDA 209
           T++  I      E +   ++ LK    +    T   + AL++     G  ++A   +L+ 
Sbjct: 78  TYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEA-MAILEQ 136

Query: 210 EIPVKSRSEVK--SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
            +   +   +K  + ++  L+  GR  +A  ++ ++   GC  +     ALI  L   G+
Sbjct: 137 MVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGK 196

Query: 268 LNRLIQLLEEVHDPDYWMDGCCR-----LILHCVRFKQLSSATDL 307
           L+  +  L ++ +     +GC R     +++H +  +QL ++ +L
Sbjct: 197 LDEALVYLNQMVE-----NGCARGVEPDVVIHNLVIRQLCASGNL 236



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/265 (20%), Positives = 119/265 (44%), Gaps = 19/265 (7%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P++ +Y  L+       ++  A+ ++EQMV+    P+ +T   ++    ++      RRI
Sbjct: 109 PTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRI 168

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKE----MNLMPTASMYNAIMA 124
           +  +  +  +P++  + ++IS   KI   D A   L+ + E      + P   ++N ++ 
Sbjct: 169 FVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIR 228

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQI 181
                 +++ AL    E++  ++     TF+ L+   C  E  E+ I + +++       
Sbjct: 229 QLCASGNLEDALAYFDELDD-SLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFP 287

Query: 182 TKYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAI 237
           T + + +L++ +   G  ++A    ++ V    IP    +   ++++  L   GR  +  
Sbjct: 288 TLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIP---DAVTYTSIIDGLCKLGRVEEGC 344

Query: 238 IVYEEIKEAGCNLEPRAVI--ALIE 260
             + E++  G   EP AV   ALI+
Sbjct: 345 ERFHEMRNRG--YEPDAVTYAALID 367



 Score = 42.0 bits (97), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 51/288 (17%), Positives = 109/288 (37%), Gaps = 16/288 (5%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P + +Y  +I   C L +V    +   +M      P   T  +++    ++       R+
Sbjct: 322 PDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRV 381

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           Y  +       ++ T+  ++    K      AY+    ++E   + T   Y+A+M G+  
Sbjct: 382 YRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCS 441

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYV 185
           + +V  A+ + + M     +P+  +++ +I        + K   Y+E+L         Y 
Sbjct: 442 EGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYT 501

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK----SALVSALASHGRTSDAIIVYE 241
           F + ++    C   +     V   E  V   +       S L+  +   G     + ++ 
Sbjct: 502 FNSFLHGL--CQRLDTVGDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVTLEIFH 559

Query: 242 EIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHD---PDYW 284
           E+   G  + P  V+   LI  L   G ++  +++  E+     PD W
Sbjct: 560 EMVSRG--VAPDVVVFNTLIRWLCIAGRVDEALEVFRELERRSAPDAW 605


>gi|242047600|ref|XP_002461546.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
 gi|241924923|gb|EER98067.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
          Length = 532

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 88/433 (20%), Positives = 172/433 (39%), Gaps = 61/433 (14%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQG--ELVPSTETINSILHACEESYE 61
           +L  TP   SY  L+   C   K   A +++  M +      P   + ++++H     ++
Sbjct: 77  ELGCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPDVVSYSTVIHG---FFK 133

Query: 62  FNLVRRIYPMICH---HNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM 118
              V + Y + C    H + PN  T  S+I    K++  D A ++L  + + ++MP  + 
Sbjct: 134 EGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTT 193

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC----SNEEDIIKYYEQL 174
           YN+++ GY        A+ +LKEM +   +P+  T++ LI +C        +  + +  +
Sbjct: 194 YNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLI-DCLCKSGFHAEAREIFNSM 252

Query: 175 KSAGGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRT 233
             +G +     + +L++ Y T G   +   V  L  +  ++S     S  + A    GR 
Sbjct: 253 IQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNGMRSNHHTFSIEIYAYCKCGRL 312

Query: 234 SDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN----RLIQLLEEVHDPDYWMDGCC 289
            +A + + ++++ G   +      +I+ L   G L+    R  Q++++   P+       
Sbjct: 313 DEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNI------ 366

Query: 290 RLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQ 349
                 + F  L     +  + +   K +E+  E     I        PPDV I   ++ 
Sbjct: 367 ------ITFTTLIHGFSMYGKWE---KAEELFYEMMDRGI--------PPDVTIFTAMID 409

Query: 350 FIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLAS 409
            +  E  +  ++K  D +                      AG   NV+SY  M   +  +
Sbjct: 410 RLFKEGKVTEAQKLFDLM--------------------PRAGAKPNVVSYNTMIHGYFIA 449

Query: 410 GNRKSASKLLSKM 422
           G      KLL  M
Sbjct: 450 GEVGEVMKLLDDM 462



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 65/155 (41%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L   P   +Y  +I   C + ++  A+    QM+   L P+  T  +++H      ++ 
Sbjct: 324 QLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWE 383

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               ++  +    + P+   F +MI    K      A  L D +      P    YN ++
Sbjct: 384 KAEELFYEMMDRGIPPDVTIFTAMIDRLFKEGKVTEAQKLFDLMPRAGAKPNVVSYNTMI 443

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            GYF   +V   + +L +M    +KP + TF+ L+
Sbjct: 444 HGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLL 478



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 39/212 (18%), Positives = 86/212 (40%), Gaps = 20/212 (9%)

Query: 36  QMVQGELVPSTETINSILHA-CEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKI 94
           +M Q   +P   T  +++   C+     + + R   MI    L PN  TF ++I      
Sbjct: 321 KMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMI-DDGLSPNIITFTTLIHGFSMY 379

Query: 95  KDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTF 154
             ++ A  L  ++ +  + P  +++ A++   F++  V  A  +   M +A  KP+  ++
Sbjct: 380 GKWEKAEELFYEMMDRGIPPDVTIFTAMIDRLFKEGKVTEAQKLFDLMPRAGAKPNVVSY 439

Query: 155 SYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEI 211
           + +IH         +++K  + +   G + T   F  L++   + G              
Sbjct: 440 NTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMVSMG-------------- 485

Query: 212 PVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
            +K   +    L+ +    GR  D + ++ E+
Sbjct: 486 -LKPDVDTCKTLIDSCCEDGRIEDILTLFREM 516


>gi|356532886|ref|XP_003535000.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic-like [Glycine max]
          Length = 485

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 120/274 (43%), Gaps = 6/274 (2%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  LI    D LK  +   + ++M +  +VP+T T N IL    ++  F+ + +I
Sbjct: 196 PDIFTYSTLIKALVDSLKFEMVELLFDKMAKRSIVPNTYTQNLILSGYGKAGRFDQMEKI 255

Query: 69  YP-MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
              M+     KP+  T  ++IS+       D      D      + P  S +N ++A Y 
Sbjct: 256 VSSMMEGTTCKPDVWTMNTVISVFGDKGQIDIMEKWYDKFCSFGIQPQRSTFNILIAAYG 315

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKY 184
            K+       V++ M +      + T++ +I       + E++ + ++Q+ + G +    
Sbjct: 316 SKRMYDKMSSVMQCMRRVKCPWTTSTYNNVIEAFAAVGDAENMERAFDQMYAEGLKADTK 375

Query: 185 VFMALINAYTTCGEFEKA-RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
            F  LIN Y   G F K    V L  ++ ++  +   +A++SA A     ++    ++ +
Sbjct: 376 TFCFLINGYANAGIFHKVISSVSLAEKLQIRVNTSFYNAIISACAKDDALTEMERFFKHM 435

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEE 277
           KE  C+ +      +IE    EG +N  I  LE+
Sbjct: 436 KEKECHPDNTTYSVMIEAYRKEG-MNDKIHYLEQ 468


>gi|307135890|gb|ADN33755.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
           melo]
          Length = 566

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/265 (22%), Positives = 123/265 (46%), Gaps = 12/265 (4%)

Query: 22  CDLLKVHVALDVVEQMVQGELVPSTET----INSILHACEESYEFNLVRRIYPMICHHNL 77
           C   K+  A+ V+E M+   ++P   +    ++S+       Y   LV ++      +  
Sbjct: 108 CKACKMRKAIKVMEMMIGSGIIPDASSYTFLVSSLCRKGNVGYAMQLVDKME----EYGY 163

Query: 78  KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALM 137
             N+ T+ S++       +   +  LLD L +  L+P A  Y+ ++   ++++    A  
Sbjct: 164 PTNTVTYNSLVRGLCMHGNLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASK 223

Query: 138 VLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYT 194
           +L E+     +P+  +++ L+     E   ED I+ + +L S G       +  L+ +  
Sbjct: 224 LLDEIIAKGGEPNLVSYNVLLTGLCKEGRTEDAIRLFRELPSKGFSPNVVSYNILLRSLC 283

Query: 195 TCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPR 253
             G +E+A  ++ +     +S S V  + L+ +LA HGRT  A+ V EE+  A       
Sbjct: 284 NEGRWEEANVLLAEMNGDERSPSTVTYNILIGSLALHGRTEHALEVLEEMIRARFKPTAS 343

Query: 254 AVIALIEHLNSEGELNRLIQLLEEV 278
           +   +I HL  +G+L+ +++ L+++
Sbjct: 344 SYNPIIAHLCKDGKLDLVVKCLDQM 368



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 3/156 (1%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSIL-HACEESYEFNL 64
           E +PS+ +Y  LI       +   AL+V+E+M++    P+  + N I+ H C++  + +L
Sbjct: 302 ERSPSTVTYNILIGSLALHGRTEHALEVLEEMIRARFKPTASSYNPIIAHLCKDG-KLDL 360

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
           V +    + + +  PN  T+ ++ +L  +      A+S++  L       T   Y  ++ 
Sbjct: 361 VVKCLDQMMYRHCNPNEGTYNAIATL-CEEGMVQEAFSIIQSLGNKQHSSTQEFYKIVIT 419

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160
              RK +   A  +L EM +    PDS T+S LI  
Sbjct: 420 SLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRG 455



 Score = 42.0 bits (97), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 8/175 (4%)

Query: 111 NLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDI 167
            ++P AS Y  +++   RK +V  A+ ++ +ME+     ++ T++ L+       N    
Sbjct: 127 GIIPDASSYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTVTYNSLVRGLCMHGNLTQS 186

Query: 168 IKYYEQLKSAGGQITKYVFMALINA-YTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALV 224
           ++  ++L   G     Y +  L+ A Y   G  E ++  +LD  I       + S   L+
Sbjct: 187 LQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASK--LLDEIIAKGGEPNLVSYNVLL 244

Query: 225 SALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279
           + L   GRT DAI ++ E+   G +    +   L+  L +EG       LL E++
Sbjct: 245 TGLCKEGRTEDAIRLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMN 299



 Score = 39.3 bits (90), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 1/121 (0%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
            K   TP S +Y  LI   C    ++ A+++   M +    P TE  NS++  C +S   
Sbjct: 438 TKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVMEENN-KPDTENYNSLILGCCKSRRT 496

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           +L   ++ ++      PN  T+  ++   +  K+ D A  +L +L+  +++  +++   +
Sbjct: 497 DLALDVFEIMVGKGYLPNETTYTILVEGIIHEKEMDLATKVLRELQLRDVISQSTLERLV 556

Query: 123 M 123
           M
Sbjct: 557 M 557


>gi|422294671|gb|EKU21971.1| hypothetical protein NGA_2006000, partial [Nannochloropsis gaditana
           CCMP526]
          Length = 472

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 91/204 (44%), Gaps = 4/204 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P++ +Y  L+T   +   +  A  V+++MVQ  L P T T N+++ A     E     
Sbjct: 19  LKPNAITYNSLLTAYTNAGDMAGAQQVLKRMVQAGLSPDTYTFNTLIAAFVARREVRAAE 78

Query: 67  RIYPMICHHNLKPNSETFRSMI-SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           ++   +  H +  +  T+  ++     K  D   A  +L+ +    + P +  YN ++ G
Sbjct: 79  KMVAYMQEHGVLADVVTYSQLLQGYATKEGDMGKAEEVLERMARDGVAPNSYTYNYLIEG 138

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQIT 182
           Y +  ++  A  VL+ M    + P S  +  L+   +   D     K  +++K  G Q  
Sbjct: 139 YVKAGEMDWAEDVLERMRTVGLAPTSMNYCVLMDAYTRRRDARGAEKILDRMKKEGVQAN 198

Query: 183 KYVFMALINAYTTCGEFEKARQVV 206
             VF  L+NAY   G+ E A  V+
Sbjct: 199 VQVFTTLMNAYAKRGDVEGAEGVL 222



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 101/201 (50%), Gaps = 13/201 (6%)

Query: 40  GELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDS 99
           G L P+  T NS+L A   + +    +++   +    L P++ TF ++I+  V  ++  +
Sbjct: 17  GNLKPNAITYNSLLTAYTNAGDMAGAQQVLKRMVQAGLSPDTYTFNTLIAAFVARREVRA 76

Query: 100 AYSLLDDLKEMNLMPTASMYNAIMAGYFRKK-DVQGALMVLKEMEQANVKPDSQTFSYLI 158
           A  ++  ++E  ++     Y+ ++ GY  K+ D+  A  VL+ M +  V P+S T++YLI
Sbjct: 77  AEKMVAYMQEHGVLADVVTYSQLLQGYATKEGDMGKAEEVLERMARDGVAPNSYTYNYLI 136

Query: 159 HNCSN------EEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD--AE 210
                       ED++   E++++ G   T   +  L++AYT   +   A + +LD   +
Sbjct: 137 EGYVKAGEMDWAEDVL---ERMRTVGLAPTSMNYCVLMDAYTRRRDARGAEK-ILDRMKK 192

Query: 211 IPVKSRSEVKSALVSALASHG 231
             V++  +V + L++A A  G
Sbjct: 193 EGVQANVQVFTTLMNAYAKRG 213



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 93/210 (44%), Gaps = 19/210 (9%)

Query: 13  SYKKLI-TYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPM 71
           +Y +L+  Y+     +  A +V+E+M +  + P++ T N ++    ++ E +    +   
Sbjct: 95  TYSQLLQGYATKEGDMGKAEEVLERMARDGVAPNSYTYNYLIEGYVKAGEMDWAEDVLER 154

Query: 72  ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131
           +    L P S  +  ++    + +D   A  +LD +K+  +     ++  +M  Y ++ D
Sbjct: 155 MRTVGLAPTSMNYCVLMDAYTRRRDARGAEKILDRMKKEGVQANVQVFTTLMNAYAKRGD 214

Query: 132 VQGALMVLKEM------EQANVK---PDSQTFSYLIHN------CSNEEDIIKYYEQLKS 176
           V+GA  VL  M      E    K   P+  T+S L++        +  E ++    ++ +
Sbjct: 215 VEGAEGVLARMLAVAEEEGGGSKDCEPNVHTYSTLMNVYARAGLAAGAEGVLT---RMTA 271

Query: 177 AGGQITKYVFMALINAYTTCGEFEKARQVV 206
           AG       F  L+ AY+  G+ E A  V+
Sbjct: 272 AGWAPNVITFTTLMTAYSRAGDPEGAELVL 301



 Score = 46.6 bits (109), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 41/85 (48%)

Query: 78  KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALM 137
           +PN  T+ +++++  +      A  +L  +      P    +  +M  Y R  D +GA +
Sbjct: 240 EPNVHTYSTLMNVYARAGLAAGAEGVLTRMTAAGWAPNVITFTTLMTAYSRAGDPEGAEL 299

Query: 138 VLKEMEQANVKPDSQTFSYLIHNCS 162
           VLK ME A V P+  T++ L+   S
Sbjct: 300 VLKRMEAAGVSPNVLTYNTLLSATS 324


>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
 gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
          Length = 722

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 109/239 (45%), Gaps = 8/239 (3%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L    SS +Y  LIT       V  A D+  +M    ++P+  T N+++H   +S +  
Sbjct: 301 RLSKKASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVE 360

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             +  +  +    L+P+  T+ S+++   K      A  L  DL+   L PT   YN ++
Sbjct: 361 AAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILI 420

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQ 180
            GY R  D++ A  + +EM +    PD  T++ L+   HN  +     ++++++ S G Q
Sbjct: 421 DGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQ 480

Query: 181 ITKYVFMALINAYTTCGEFEKA---RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDA 236
              + +   I A  T G   KA   R+V++   I   S +   + L+  L   G  +DA
Sbjct: 481 PDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGI--SSDTVTYNILIDGLCKTGNLNDA 537



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/293 (21%), Positives = 118/293 (40%), Gaps = 16/293 (5%)

Query: 2   HAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYE 61
           HA L   P+  +Y  LI   C L  +  A  + E+MV+   +P   T   ++     +  
Sbjct: 406 HAGL--APTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACS 463

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
             + R  +  +    L+P+   + + I   + +     A+ L + +    +      YN 
Sbjct: 464 LAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNI 523

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH-NCSNE--EDIIKYYEQLKSAG 178
           ++ G  +  ++  A  +  +M    ++PD  T++ LIH +C      +  K+++ + S G
Sbjct: 524 LIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISDG 583

Query: 179 GQITKYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTS 234
              +   +   I+AY   G    A    R+++   E  V+      + L+ AL   GRT 
Sbjct: 584 LAPSAVTYTVFIHAYCRRGNLYSAYGWFRKML---EEGVEPNEITYNVLIHALCRTGRTQ 640

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDY 283
            A   + E+ E G          LI+    EG     ++   E+H     PDY
Sbjct: 641 LAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNGIHPDY 693



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 7/154 (4%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           + P   +Y  LI   C+   +  A    + M+   L PS  T    +HA C     ++  
Sbjct: 549 LQPDCITYTCLIHAHCERGLLREARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAY 608

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
                M+    ++PN  T+  +I    +      AY    ++ E  L+P    Y  ++ G
Sbjct: 609 GWFRKML-EEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLVPNKYTYTLLIDG 667

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159
             ++ + + A+    EM Q  + PD     YL H
Sbjct: 668 NCKEGNWEDAMRFYFEMHQNGIHPD-----YLTH 696



 Score = 40.0 bits (92), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 25/120 (20%), Positives = 52/120 (43%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + PS+ +Y   I   C    ++ A     +M++  + P+  T N ++HA   +    L  
Sbjct: 584 LAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAY 643

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R +  +    L PN  T+  +I  N K  +++ A     ++ +  + P    + A+  G+
Sbjct: 644 RHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNGIHPDYLTHKALFKGF 703


>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 118/270 (43%), Gaps = 6/270 (2%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           KL   P+ A++  L+   C   K   AL + ++M Q  + P+T     IL    ++   +
Sbjct: 194 KLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTD 253

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
            V R+   +      P+S T  +++    K+   D A++LL   ++   +     Y++++
Sbjct: 254 DVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLI 313

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY----YEQLKSAGG 179
            G FR K         ++M +A ++PD   ++ LI     E  ++ Y       +   G 
Sbjct: 314 DGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFC-EVGMVDYALNMLNDMTQRGL 372

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAII 238
               Y + ALI  +   G  +KAR + L+ ++      S   + L+  +  +G   +A  
Sbjct: 373 SPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQ 432

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGEL 268
           ++ +++  GC+       ALI+ L   GEL
Sbjct: 433 IFNQMENLGCSPSIMTFNALIDGLCKAGEL 462



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 84/438 (19%), Positives = 171/438 (39%), Gaps = 55/438 (12%)

Query: 38  VQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKP-----------NSETFRS 86
           +  E++   ET+N +  A E+   F L   I   +     +P              +FRS
Sbjct: 37  ISNEVLTVMETVNPMEDALEKLAPF-LSSEIVNDVMREQRRPELGFRFFIWTTRRRSFRS 95

Query: 87  MISLNVKI----KD--FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLK 140
            ++ N+ I    KD  FD+ + +L++LK  N+      ++ ++A Y +    + A+    
Sbjct: 96  WVTHNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFG 155

Query: 141 EMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCG 197
           +M+    KPD  T++ ++H    +E     +  Y Q+        +  F+ L+N     G
Sbjct: 156 KMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNG 215

Query: 198 EFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI 256
           + + A ++  +  +  +   + + + ++S L    RT D   +   +K +GC  +     
Sbjct: 216 KTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCN 275

Query: 257 ALIEHLNSEGELNRLIQLLEEVHDPDYWMD--GCCRLILHCVRFKQLSSATDLLKQLKDK 314
           AL++     G+++    LL+      Y +   G   LI    R K+     +  +++   
Sbjct: 276 ALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKA 335

Query: 315 FKDDEMAMEYHFSEIFCQIATTD--------------PPDV-----------QIG-LDLL 348
             + ++ +       FC++   D               PD             +G LD  
Sbjct: 336 GIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKA 395

Query: 349 QFIKDELG----LPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYK 404
           + ++ E+      P S      + G C N   L  A  I+ + EN G   +++++  +  
Sbjct: 396 RSLQLEISKNDCFPTSCTYTILICGMCRNGL-LDEARQIFNQMENLGCSPSIMTFNALID 454

Query: 405 AFLASGNRKSASKLLSKM 422
               +G  + A  L  KM
Sbjct: 455 GLCKAGELEEARHLFYKM 472



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/251 (20%), Positives = 109/251 (43%), Gaps = 11/251 (4%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P S +   L+   C L ++  A  +++   +   V   +  +S++     +  ++ V+  
Sbjct: 269 PDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEW 328

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    ++P+   +  +I    ++   D A ++L+D+ +  L P    YNA++ G+  
Sbjct: 329 CRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCD 388

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYV 185
              +  A  +  E+ + +  P S T++ LI   C N   ++  + + Q+++ G   +   
Sbjct: 389 VGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMT 448

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIP------VKSRSEVKSALVSALASH--GRTSDAI 237
           F ALI+     GE E+AR +    EI       ++        + +A   H   R  DA 
Sbjct: 449 FNALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTANGFHRVDREEDAF 508

Query: 238 IVYEEIKEAGC 248
            V +++ + GC
Sbjct: 509 RVLDQMVKNGC 519



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 66/364 (18%), Positives = 137/364 (37%), Gaps = 53/364 (14%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  I P    Y  LI   C++  V  AL+++  M Q  L P T   N+++    +    +
Sbjct: 334 KAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLD 393

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             R +   I  ++  P S T+  +I    +    D A  + + ++ +   P+   +NA++
Sbjct: 394 KARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALI 453

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYL-------------IHNCSNEEDIIKY 170
            G  +  +++ A  +  +ME   +  +   F  L              H    EED  + 
Sbjct: 454 DGLCKAGELEEARHLFYKME---IGKNPSLFLRLSQGADRVMDTANGFHRVDREEDAFRV 510

Query: 171 YEQLKSAGGQITKYVFMALIN----------AYTTC------------------------ 196
            +Q+   G   +  V+  L+           A++                          
Sbjct: 511 LDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKYLRSLPSQEDETLKLAEEHFEK 570

Query: 197 GEFEKARQVVLDAEIPVKSRSEVKSAL-VSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255
           GE EKA + +L+    + +       + +  L    R+ +A+ ++  +KE   ++ P + 
Sbjct: 571 GELEKAVRCLLEMNFKLNNFEIAPYTIWLIGLCQARRSEEALKIFLVLKECQMDVNPPSC 630

Query: 256 IALIEHLNSEGELNRLIQLLEEVHDPDYWM--DGCCRLILHCVRFKQLSSATDLLKQLKD 313
           + LI  L  +G L   + +     +  + +    C +L+   +   ++  A DLL ++  
Sbjct: 631 VMLINGLCKDGNLEMAVDIFLYTLEKGFMLMPRICNQLLRSLILQDKMKHALDLLNRMNS 690

Query: 314 KFKD 317
              D
Sbjct: 691 AGYD 694


>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
          Length = 716

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/461 (18%), Positives = 170/461 (36%), Gaps = 84/461 (18%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K +  P+S++Y  +I   C   +V  A  ++++M    L P+  T+N ++    ++ +  
Sbjct: 247 KKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLE 306

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              +I+         P+  T+ S+I    K    D AY L + + +        +Y +++
Sbjct: 307 EAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLI 366

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK 183
             +F     +    V KE+ +   KPD                                 
Sbjct: 367 RNFFIHGRKEDGHKVFKELIRRGCKPD--------------------------------- 393

Query: 184 YVFMALINAYTTC----GEFEKARQVVLDAE----IP-VKSRSEVKSALVSALASHGRTS 234
              + L+N Y  C    GE EK R +  D      +P V+S     S L+  L   G+  
Sbjct: 394 ---LTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSY----SILIHGLTKAGQAR 446

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYWMDGCCR 290
           +   ++  +K+ G  L+ RA  A+++     G++++  ++LEE+ +    P     G   
Sbjct: 447 ETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGA-- 504

Query: 291 LILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTD------------- 337
           ++    +  +L  A  L ++ K K  +  + +     + F ++   D             
Sbjct: 505 IVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKG 564

Query: 338 -PPDVQIGLDLLQFI---------------KDELGLPPSRKCLDFLLGACVNARDLKRAH 381
             P+V     LL  +                 E+  PP+      L+      +   +A 
Sbjct: 565 LTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAF 624

Query: 382 LIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           + W++ +  GL  NV++Y  M       GN   A  L  + 
Sbjct: 625 VFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERF 665



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 81/164 (49%), Gaps = 10/164 (6%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y  LI     + ++  A  ++E+M++  L P+  T NS+L A  ++ E N       ++C
Sbjct: 537 YSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEIN-----EALVC 591

Query: 74  HHNLK-----PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
             ++K     PN+ T+  +I+   +++ ++ A+    D+++  L+P    Y  +++G  +
Sbjct: 592 FQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAK 651

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE 172
             ++  A  + +  +     PD+ +F+ LI   SN    ++ Y+
Sbjct: 652 VGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQ 695



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/255 (18%), Positives = 108/255 (42%), Gaps = 37/255 (14%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  ++   C   KVH A +++E+M +  + P+  T  +I+    +    +    ++   
Sbjct: 466 AYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEA 525

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               ++ N   + S+I    K+   D AY +L+++ +  L P    +N+++    + +++
Sbjct: 526 KSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEI 585

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMAL 189
             AL+  + M++    P++ T+S LI+     +   K   +++ ++  G        +  
Sbjct: 586 NEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQG-------LVPN 638

Query: 190 INAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
           +  YTT                           ++S LA  G  +DA  ++E  K  G  
Sbjct: 639 VVTYTT---------------------------MISGLAKVGNITDAYSLFERFKANGGI 671

Query: 250 LEPRAVIALIEHLNS 264
            +  +  ALIE +++
Sbjct: 672 PDAASFNALIEGMSN 686



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 47/262 (17%), Positives = 111/262 (42%), Gaps = 5/262 (1%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           +V  AL +V+++    L P     N  +    ++   ++  + +  +    LKP+  ++ 
Sbjct: 95  QVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHELKAQGLKPDDVSYT 154

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           SMI +  K      A  L   ++    +P A  YN ++ GY      + A  +L+ + + 
Sbjct: 155 SMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRER 214

Query: 146 NVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
              P   +F+ ++     +  +   +  +E +K    +     +  +I+     G  E+A
Sbjct: 215 GCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK-DAEPNSSTYNIIIDMLCLGGRVEEA 273

Query: 203 RQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEH 261
            +++ + E   +       + +V  L    +  +A  ++E   + GCN +     +LI+ 
Sbjct: 274 YRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDG 333

Query: 262 LNSEGELNRLIQLLEEVHDPDY 283
           L  +G+++   +L E++ D  +
Sbjct: 334 LGKKGQVDEAYRLFEKMLDAGH 355



 Score = 46.2 bits (108), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 59/122 (48%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  +TP+  ++  L+       +++ AL   + M + +  P+T T + +++      ++N
Sbjct: 562 KKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYN 621

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
                +  +    L PN  T+ +MIS   K+ +   AYSL +  K    +P A+ +NA++
Sbjct: 622 KAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALI 681

Query: 124 AG 125
            G
Sbjct: 682 EG 683


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 98/442 (22%), Positives = 179/442 (40%), Gaps = 26/442 (5%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSIL--HACEESYEFNLVR 66
           P++ SY  +I       +   A++V ++M +  ++P+  T N+++  H      E     
Sbjct: 194 PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSL 253

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R   M+CH  LKPN+ T+  ++S   +        +LLD++    ++P    Y+ +  G 
Sbjct: 254 RDQ-MVCH-GLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGL 311

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKS---AGGQITK 183
            R  D +  L +  +  +  V     T S L++    +  +    E L+S   AG   T+
Sbjct: 312 SRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTR 371

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEE 242
            ++  LIN Y   GE E A       +   +K      +AL++ L    R ++A  +  E
Sbjct: 372 VIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLME 431

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYWMDGCCRLILHCVRF 298
           +++ G N        LI+     G+L +   +L E+ +    P+    G    I++   F
Sbjct: 432 MQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGS---IVNA--F 486

Query: 299 KQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLP 358
            +     + +  L D F  D +     ++ I        P D      L++ +K   G+ 
Sbjct: 487 CKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQ--AFILVEKMKSN-GIS 543

Query: 359 PSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKL 418
           PS    + L+    N   +  A  I     N  L  + +SY  +  A    GN   A  L
Sbjct: 544 PSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDL 603

Query: 419 LSKMPKDDPHVRFVIQACKQTY 440
             +M K      + I++  +TY
Sbjct: 604 QQRMHK------YGIKSTVRTY 619



 Score = 45.1 bits (105), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 36/199 (18%), Positives = 86/199 (43%), Gaps = 3/199 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  SY  ++   C   K+  A+ +++ M   +++P+ +  N+I+ A  E    +   
Sbjct: 472 LKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAF 531

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +  + + P+  T+  +I           A  +++ L    L+P A  YN +++  
Sbjct: 532 ILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISAC 591

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY---YEQLKSAGGQITK 183
             + ++  AL + + M +  +K   +T+  LI        +I+    Y+++       + 
Sbjct: 592 CYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLIEMEYLYQKMMQNNVVPSN 651

Query: 184 YVFMALINAYTTCGEFEKA 202
            +   ++ AY+  G   KA
Sbjct: 652 AIHNIMVEAYSKYGNEIKA 670


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 130/298 (43%), Gaps = 18/298 (6%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQG-ELVPSTETINSILHACEESYEFNLVRR 67
           P+S  +  LI       ++  A  V+  MV    +VP   T NS+++   +     L   
Sbjct: 345 PTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALE 404

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +   + +   KPN  ++  ++    K+   D AY+LL+++    L P    +N +++ + 
Sbjct: 405 VLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFC 464

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKY 184
           ++  +  A+ + +EM +   KPD  TF+ LI      ++I   +     + S G      
Sbjct: 465 KEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTV 524

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEI 243
            +  LINA+   GE ++AR++V +         E+  ++L+  L   G    A  ++E++
Sbjct: 525 TYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKM 584

Query: 244 KEAGCNLEPRAVIA--LIEHLNSEGELNRLIQLLEEV----HDPDY-----WMDGCCR 290
              G  L P ++    LI  L   G +   ++  +E+      PD       ++G CR
Sbjct: 585 LRDG--LVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCR 640



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 81/393 (20%), Positives = 164/393 (41%), Gaps = 31/393 (7%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P+ ++ N +L          +   ++  +    + P   TF  ++     + + DSA S+
Sbjct: 174 PTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALCAVNEVDSALSV 233

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163
           L D+ +   +P + +Y  ++    +   V  AL +L+EM      PD++TF+ +I     
Sbjct: 234 LRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCK 293

Query: 164 EEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK 220
            + I    K   ++   G       +  L+N     G  + A+   L   IP K  S + 
Sbjct: 294 FDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKD--LFYRIP-KPTSVIF 350

Query: 221 SALVSALASHGRTSDA-IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279
           + L+    +HGR  DA  ++ + +   G   +     +LI     +G +   +++L ++ 
Sbjct: 351 NTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMR 410

Query: 280 D----PDYW-----MDGCCRLILHCVRFKQLSSATDLLKQLK-DKFKDDEMAMEYHFSEI 329
           +    P+ +     +DG C+L        ++  A +LL ++  D  K + +      S  
Sbjct: 411 NKGCKPNVYSYTILVDGFCKL-------GKIDEAYNLLNEMSADGLKPNTVGFNCLISA- 462

Query: 330 FCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYEN 389
           FC+     P  V+I  ++        G  P     + L+       ++K A  + ++  +
Sbjct: 463 FCK-EHRIPEAVEIFREM-----PRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMIS 516

Query: 390 AGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
            G+  N ++Y  +  AFL  G  K A KL+++M
Sbjct: 517 EGVVANTVTYNTLINAFLRRGEIKEARKLVNEM 549



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 81/406 (19%), Positives = 166/406 (40%), Gaps = 21/406 (5%)

Query: 29  VALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
           VA +V   M+  ++ P+  T   ++ A     E +    +   +  H   PNS  ++++I
Sbjct: 194 VAANVFYDMLSRKIPPTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLI 253

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
               K    + A  LL+++  M  +P A  +N ++ G  +   +  A  ++  M      
Sbjct: 254 HSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFT 313

Query: 149 PDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQI---TKYVFMALINAYTTCGEFEKARQV 205
           PD  T+ YL++        I   +  K    +I   T  +F  LI+ + T G  + A+ V
Sbjct: 314 PDDITYGYLMNGLCK----IGRVDAAKDLFYRIPKPTSVIFNTLIHGFVTHGRLDDAKAV 369

Query: 206 VLDAEIPVKSRSEV--KSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
           + D         +V   ++L+      G    A+ V  +++  GC     +   L++   
Sbjct: 370 LSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFC 429

Query: 264 SEGELNRLIQLLEEVH----DPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDE 319
             G+++    LL E+      P+     C  LI    +  ++  A ++ +++  K    +
Sbjct: 430 KLGKIDEAYNLLNEMSADGLKPNTVGFNC--LISAFCKEHRIPEAVEIFREMPRKGCKPD 487

Query: 320 MAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKR 379
           +   Y F+ +   +   D  +++  L LL+ +  E G+  +    + L+ A +   ++K 
Sbjct: 488 V---YTFNSLISGLCEVD--EIKHALWLLRDMISE-GVVANTVTYNTLINAFLRRGEIKE 541

Query: 380 AHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKD 425
           A  +  E    G   + ++Y  + K    +G    A  L  KM +D
Sbjct: 542 ARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRD 587



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/313 (18%), Positives = 132/313 (42%), Gaps = 44/313 (14%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN-- 63
           +I P+  ++  ++   C + +V  AL V+  M +   VP++    +++H+  +    N  
Sbjct: 206 KIPPTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEA 265

Query: 64  --LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLL----------DDLKEMN 111
             L+  ++ M C     P++ETF  +I    K    + A  ++          DD+    
Sbjct: 266 LQLLEEMFLMGC----VPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGY 321

Query: 112 LM---------------------PTASMYNAIMAGYFRKKDVQGALMVLKEMEQA-NVKP 149
           LM                     PT+ ++N ++ G+     +  A  VL +M  +  + P
Sbjct: 322 LMNGLCKIGRVDAAKDLFYRIPKPTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVP 381

Query: 150 DSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D  T++ LI+    +  +   ++    +++ G +   Y +  L++ +   G+ ++A  ++
Sbjct: 382 DVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLL 441

Query: 207 LDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
            +     +K  +   + L+SA     R  +A+ ++ E+   GC  +     +LI  L   
Sbjct: 442 NEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEV 501

Query: 266 GELNRLIQLLEEV 278
            E+   + LL ++
Sbjct: 502 DEIKHALWLLRDM 514



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 81/173 (46%), Gaps = 3/173 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   ++  LI+  C++ ++  AL ++  M+   +V +T T N++++A     E    R++
Sbjct: 486 PDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKL 545

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +       +  T+ S+I    +  + D A SL + +    L+P++   N ++ G  R
Sbjct: 546 VNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCR 605

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAG 178
              V+ A+   KEM      PD  TF+ LI+        ED +  + +L++ G
Sbjct: 606 SGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEG 658



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 73/163 (44%), Gaps = 16/163 (9%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA------CEESYEFN--L 64
           +Y  LI   C   +V  A  + E+M++  LVPS+ + N +++        EE+ EF   +
Sbjct: 560 TYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEM 619

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
           V R           P+  TF S+I+   +    +   ++   L+   + P    YN +M+
Sbjct: 620 VLR--------GSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMS 671

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI 167
              +   V  A ++L E  +    P+ +T+S L+ +   +E +
Sbjct: 672 WLCKGGFVYDACLLLDEGIEDGFVPNDRTWSILLQSLVPQETL 714


>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 584

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 112/252 (44%), Gaps = 7/252 (2%)

Query: 1   MHAKLE---ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACE 57
           M+ K++   + P+  +Y  ++   C   +   A  V ++M +  +  +  T N+++    
Sbjct: 255 MYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLC 314

Query: 58  ESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTAS 117
              + N    +   +    + PN  T+ ++I     ++    A SL  DLK   L P+  
Sbjct: 315 REMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLV 374

Query: 118 MYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS---NEEDIIKYYEQL 174
            YN +++G+ +K D  GA  V+KEME+  +KP   T++ LI   +   N E  I+    +
Sbjct: 375 TYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSM 434

Query: 175 KSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRT 233
           +  G     + +  LI+ +   G   +A ++     E   +    + + +V      G +
Sbjct: 435 EELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSS 494

Query: 234 SDAIIVYEEIKE 245
             A+ ++ E++E
Sbjct: 495 YRALRLFREMEE 506



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 87/466 (18%), Positives = 183/466 (39%), Gaps = 59/466 (12%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLK----------- 78
           A  ++ Q++ G++     T +S+LH   ES       R+Y +I +  ++           
Sbjct: 58  AQSLLLQVISGKIQSQFFTSSSLLHYLTESETSKTKSRLYEVIINAYVQSQSLDSSIYYF 117

Query: 79  ---------PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
                    P S  F ++++  V    F+  +   ++ K   ++   S +  ++ G    
Sbjct: 118 NEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNESKIKVVLDVYS-FGIVIKGCCEA 176

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVF 186
            +++ +  +L E+ +    P+   ++ LI  C  + +I K    + ++   G    ++ +
Sbjct: 177 GEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTY 236

Query: 187 MALINAYTTCG----EFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             LI+     G     FE   ++      P        + +++ L   GRT DA  V++E
Sbjct: 237 TVLIHGLFKNGIKKQGFEMYEKMQEHGVFP---NLHTYNCVMNQLCKDGRTKDAFKVFDE 293

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDY-----WMDGCCRLIL 293
           ++E G +        LI  L  E + N   ++++++     +P+       +DG C +  
Sbjct: 294 MRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGV-- 351

Query: 294 HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKD 353
                ++L  A  L + LK +     +         FC+   T       G   +    +
Sbjct: 352 -----RKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTS------GAGKVVKEME 400

Query: 354 ELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRK 413
           E G+ PS+     L+     + ++++A  +    E  GL  +V +Y  +   F   G   
Sbjct: 401 ERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMN 460

Query: 414 SASKLLSKM------PKDDPHVRFVIQACKQTYTIPSLQKERGFEK 453
            AS+L   M      P +  +   V+  CK+  +  +L+  R  E+
Sbjct: 461 EASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLFREMEE 506


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/242 (19%), Positives = 112/242 (46%), Gaps = 13/242 (5%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   ++  LI      LK+  AL++++ M+   + P   T NS+L+   ++ +F  V   
Sbjct: 459 PDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMET 518

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           Y  +      PN  TF  ++    + +  D A  LL+++K  ++ P A  +  ++ G+ +
Sbjct: 519 YKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCK 578

Query: 129 KKDVQGALMVLKEMEQA-NVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKY 184
             D+ GA  + ++ME+A  V   + T++ +IH  + + ++    K ++++         Y
Sbjct: 579 NGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGY 638

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
            +  +++ +   G      + +L+          +++  + +L + GR  + + V + + 
Sbjct: 639 TYRLMVDGFCKTGNVNLGYKFLLEM---------MENGFIPSLTTLGRVINCLCVEDRVY 689

Query: 245 EA 246
           EA
Sbjct: 690 EA 691



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 137/319 (42%), Gaps = 16/319 (5%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  LI   C   K   A   + +MV   L P + T N+++    +     L  RI
Sbjct: 284 PDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERI 343

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
                 +   P+  T+RS+I       + + A +L ++     + P   +YN ++ G   
Sbjct: 344 VGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSN 403

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIH-----NCSNEEDIIKYYEQLKSAGGQITK 183
           +  +  A  +  EM +  + P+ QTF+ L++      C ++ D +   + + S G     
Sbjct: 404 QGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGL--VKVMISKGYFPDI 461

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYE 241
           + F  LI+ Y+T  + E A + +LD  +      +V +  +L++ L    +  D +  Y+
Sbjct: 462 FTFNILIHGYSTQLKMENALE-ILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYK 520

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDYWMDGCCRLILHCVR 297
            + E GC         L+E L    +L+  + LLEE+     +PD    G   LI    +
Sbjct: 521 TMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFG--TLIDGFCK 578

Query: 298 FKQLSSATDLLKQLKDKFK 316
              L  A  L +++++ +K
Sbjct: 579 NGDLDGAYTLFRKMEEAYK 597



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 87/452 (19%), Positives = 175/452 (38%), Gaps = 46/452 (10%)

Query: 12  ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPM 71
           +++ KL+   C    V     +++++++  ++P+  T N  +    +  E +   R+   
Sbjct: 217 STFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGC 276

Query: 72  ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131
           +     KP+  T+ ++I    K   F  A   L  +    L P +  YN ++AGY +   
Sbjct: 277 LIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGM 336

Query: 132 VQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK---YVFMA 188
           VQ A  ++ +       PD  T+  LI    +E +  +       A G+  K    ++  
Sbjct: 337 VQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNT 396

Query: 189 LINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           LI   +  G   +A Q+  + +E  +    +  + LV+ L   G  SDA  + + +   G
Sbjct: 397 LIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKG 456

Query: 248 CNLEPRAVIALIE----HLNSEGELNRLIQLLEEVHDPDYW-----MDGCCR-------- 290
              +      LI      L  E  L  L  +L+   DPD +     ++G C+        
Sbjct: 457 YFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVM 516

Query: 291 --------------------LILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIF 330
                               L+    R+++L  A  LL+++K+K  + +        + F
Sbjct: 517 ETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGF 576

Query: 331 CQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENA 390
           C+       D+     L + +++   +  S    + ++ A     ++  A  +++E  + 
Sbjct: 577 CKNG-----DLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDR 631

Query: 391 GLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
            L  +  +Y  M   F  +GN     K L +M
Sbjct: 632 CLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEM 663



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 68/160 (42%), Gaps = 1/160 (0%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   ++  L+   C +  V  A  +V+ M+     P   T N ++H      +     
Sbjct: 422 LIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENAL 481

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            I  ++  + + P+  T+ S+++   K   F+        + E    P    +N ++   
Sbjct: 482 EILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESL 541

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE 165
            R + +  AL +L+EM+  +V PD+ TF  LI   C N +
Sbjct: 542 CRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGD 581



 Score = 43.1 bits (100), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 29/146 (19%), Positives = 63/146 (43%), Gaps = 1/146 (0%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQG-ELVPSTETINSILHACEESYEFNLV 65
           + P + ++  LI   C    +  A  +  +M +  ++  ST T N I+HA  E     + 
Sbjct: 562 VNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMA 621

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            +++  +    L P+  T+R M+    K  + +  Y  L ++ E   +P+ +    ++  
Sbjct: 622 EKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINC 681

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDS 151
              +  V  A  ++  M Q  + P++
Sbjct: 682 LCVEDRVYEAAGIIHRMVQKGLVPEA 707


>gi|334186610|ref|NP_193380.3| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|223635634|sp|O23491.2|PP315_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g16470
 gi|332658358|gb|AEE83758.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 501

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 103/232 (44%), Gaps = 20/232 (8%)

Query: 47  ETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDD 106
           ET   +L  C++  E+   +RI+  +       N      ++ L     D  +A  L   
Sbjct: 109 ETYAVLLQECKQRKEYTKGKRIHAQMFVVGFALNEYLKVKLLILYALSGDLQTAGILFRS 168

Query: 107 LKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED 166
           LK  +L+P    +NA+++GY +K   Q  L +  +M Q  + PD  TF+ +   CS  + 
Sbjct: 169 LKIRDLIP----WNAMISGYVQKGLEQEGLFIYYDMRQNRIVPDQYTFASVFRACSALDR 224

Query: 167 IIKYYEQLKSAGGQITK-------YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEV 219
           +    E  K A   + K        V  AL++ Y  C  F    +V       + +R+ +
Sbjct: 225 L----EHGKRAHAVMIKRCIKSNIIVDSALVDMYFKCSSFSDGHRVFDQ----LSTRNVI 276

Query: 220 K-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNR 270
             ++L+S    HG+ S+ +  +E++KE GC   P   + ++   N  G +++
Sbjct: 277 TWTSLISGYGYHGKVSEVLKCFEKMKEEGCRPNPVTFLVVLTACNHGGLVDK 328



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/206 (19%), Positives = 86/206 (41%), Gaps = 10/206 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
            L +   M Q  +VP   T  S+  AC         +R + ++    +K N     +++ 
Sbjct: 193 GLFIYYDMRQNRIVPDQYTFASVFRACSALDRLEHGKRAHAVMIKRCIKSNIIVDSALVD 252

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K   F   + + D L   N++     + ++++GY     V   L   ++M++   +P
Sbjct: 253 MYFKCSSFSDGHRVFDQLSTRNVIT----WTSLISGYGYHGKVSEVLKCFEKMKEEGCRP 308

Query: 150 DSQTFSYLIHNCSNEEDIIKYYEQLKSA----GGQITKYVFMALINAYTTCGEFEKARQV 205
           +  TF  ++  C++   + K +E   S     G +     + A+++     G  ++A + 
Sbjct: 309 NPVTFLVVLTACNHGGLVDKGWEHFYSMKRDYGIEPEGQHYAAMVDTLGRAGRLQEAYEF 368

Query: 206 VLDAEIPVKSRSEVKSALVSALASHG 231
           V+ +  P K    V  +L+ A   HG
Sbjct: 369 VMKS--PCKEHPPVWGSLLGACRIHG 392


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 125/298 (41%), Gaps = 13/298 (4%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +I P+   Y  LI   C   ++  A  +   M    ++P+  T N+++    +       
Sbjct: 223 KIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKA 282

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +Y  +    L PN  TF  +I    K  +  SA   L D+    ++P   +YN ++ G
Sbjct: 283 LELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDG 342

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQIT 182
           Y +  ++  AL +  E+E+  + PD  T+S LI   C  +  E+     +++K  G    
Sbjct: 343 YCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPN 402

Query: 183 KYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
              +  LI+ Y   G  EKA +V     E  ++      S L+      G+   A+ +Y 
Sbjct: 403 AVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYT 462

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYW-----MDGCCR 290
           E+   G   +  A  ALI+    +G      +L +E+ +    P+ +     +DG C+
Sbjct: 463 EMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCK 520



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 78/399 (19%), Positives = 159/399 (39%), Gaps = 27/399 (6%)

Query: 41  ELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSA 100
           +++P+ +  N +L    +   F+ + ++Y  +      PN  T+ ++I    +  DF  A
Sbjct: 153 DVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKA 212

Query: 101 YSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160
           + L D++ E  + PT  +Y  ++ G   +  +  A  + + M  + + P+  T++ ++  
Sbjct: 213 FRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDG 272

Query: 161 ---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSR 216
               ++ +  ++ Y+++   G       F  LI+      E   AR+ ++D A   V   
Sbjct: 273 YCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPN 332

Query: 217 SEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276
             V + L+      G  S+A+ ++ EI++     +      LI+ L     +     LL+
Sbjct: 333 IFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQ 392

Query: 277 EVHDPDY---------WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFS 327
           E+    +          +DG C+          +  A ++  Q+ +K  +  +       
Sbjct: 393 EMKKKGFLPNAVTYNTLIDGYCKE-------GNMEKAIEVCSQMTEKGIEPNIITFSTLI 445

Query: 328 EIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEY 387
           + +C+       +  +GL     IK   GL P       L+       + K A  + KE 
Sbjct: 446 DGYCKAGKM---EAAMGLYTEMVIK---GLLPDVVAYTALIDGHFKDGNTKEAFRLHKEM 499

Query: 388 ENAGLPYNVLSYLWMYKAFLASGNRKSASKL-LSKMPKD 425
           + AGL  NV +   +       G    A KL L+K   D
Sbjct: 500 QEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTD 538



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 2/156 (1%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEF 62
           K EI P   +Y  LI   C + ++  A  ++++M +   +P+  T N+++   C+E    
Sbjct: 361 KHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEG-NM 419

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
                +   +    ++PN  TF ++I    K    ++A  L  ++    L+P    Y A+
Sbjct: 420 EKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTAL 479

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
           + G+F+  + + A  + KEM++A + P+  T S LI
Sbjct: 480 IDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLI 515



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 32/158 (20%), Positives = 75/158 (47%), Gaps = 7/158 (4%)

Query: 53  LHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNL 112
           L AC         ++++ ++ +   +P      S+IS+     +   A+++ D++   NL
Sbjct: 638 LKACTLKSSLVEGKQMHALVINFGFEPIIFLQTSLISMYSATGNVADAHNMFDEIPSKNL 697

Query: 113 MPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN--EEDIIKY 170
           +     + ++++ Y   +    AL + ++M+  +V+PD  T +  +  C++    D+ ++
Sbjct: 698 IS----WTSVISAYVDNQRPNKALQLFRQMQMDDVQPDIVTVTVALSACADLGALDMGEW 753

Query: 171 -YEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVL 207
            +  ++  G      +  +LIN Y+ CGE   AR+  L
Sbjct: 754 IHAYIRHRGLDTDLCLNNSLINMYSKCGEIGTARRFSL 791


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 126/286 (44%), Gaps = 8/286 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  ++  LI   C    +  A  V E M +  L P   T N+++       + +  +
Sbjct: 146 VIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQ 205

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++ ++      PN  ++  +I+ + K    D A  LL ++   +L P    Y+ +M G+
Sbjct: 206 KLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGF 265

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK--- 183
            +    Q A  +LKEM    + P+  T+S ++        + + +E LK+   Q +K   
Sbjct: 266 CQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAM--QESKIEP 323

Query: 184 --YVFMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVY 240
             +++  LI    T G+ E AR++  +  +  ++      + ++S L   G +++A  ++
Sbjct: 324 NIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELF 383

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
            E+   GC         +I+     G+    ++L+EE+    +  D
Sbjct: 384 REMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKGFSAD 429



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 83/443 (18%), Positives = 176/443 (39%), Gaps = 48/443 (10%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           KL + P+  ++  L++  C   K+  A+ + ++MV+    P   T ++I++   +     
Sbjct: 3   KLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTT 62

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
           +  ++   +     KPN   + ++I    K +    A     ++ +  + P    Y++I+
Sbjct: 63  MALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSIL 122

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQ 180
            G+     V  A  + K+M + NV P+  TF+ LI     +  I +    +E +   G +
Sbjct: 123 HGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLE 182

Query: 181 ITKYVFMALINAYTTCGEFEKARQ------------------VVLDAEIPVKSRSEVKSA 222
              Y + AL++ Y +  + ++A++                  ++++         E K  
Sbjct: 183 PDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGL 242

Query: 223 LVSALASHGRTSDAIIVYEEIKEAGCNL-EPRAVIALIEHLNSEGELNRLIQLLEEVHDP 281
           L  A  SH   +  I  Y  +    C +  P+    L++ + S G L  LI         
Sbjct: 243 L--AEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITY------- 293

Query: 282 DYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDV 341
              +DG C       +   L  A +LLK +++   +  + +     E  C         +
Sbjct: 294 SIVLDGLC-------KHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFG-----KL 341

Query: 342 QIGLDLLQ--FIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSY 399
           +   +L    F+K   G+ P+      ++   +       A  +++E    G   N  +Y
Sbjct: 342 EAARELFSNLFVK---GIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTY 398

Query: 400 LWMYKAFLASGNRKSASKLLSKM 422
             + + FL +G+  +A +L+ +M
Sbjct: 399 NVIIQGFLRNGDTPNAVRLIEEM 421



 Score = 46.2 bits (108), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 6/160 (3%)

Query: 17  LITYS------CDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYP 70
           LITYS      C    +  A ++++ M + ++ P+      ++       +    R ++ 
Sbjct: 290 LITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFS 349

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
            +    ++P   T+  MIS  +K    + A  L  ++     +P +  YN I+ G+ R  
Sbjct: 350 NLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNG 409

Query: 131 DVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY 170
           D   A+ +++EM       DS TF  L    S++E I ++
Sbjct: 410 DTPNAVRLIEEMVGKGFSADSSTFRMLSDLESSDEIISQF 449


>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 754

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 116/263 (44%), Gaps = 7/263 (2%)

Query: 4   KLEITPSSASYKKLITYSC--DLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYE 61
           K ++TPS  +Y  +I  SC    L     L +  +M    + P   T N++L+AC     
Sbjct: 205 KEKVTPSILTYNTVIN-SCARGGLNWEGLLSLFAEMRHEGIQPDIITYNTLLNACANRGL 263

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
            +    ++  +    + P+  T+R+++    K+   +    LL +++    +P  S YN 
Sbjct: 264 GDEAEMVFRTMNEGGMVPDITTYRNLVETFGKLNKLEKVSELLKEMESSGNLPDISSYNV 323

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAG 178
           ++  Y  K D++ A+ V ++M++A   P++ T+S L++        +D+ + + ++K + 
Sbjct: 324 LLEAYASKGDIRHAMGVFRQMQEARCVPNAVTYSMLLNLYGGHGRYDDVRELFLEMKVSN 383

Query: 179 GQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAI 237
            +     +  LI  +   G F++   +  D  E  V+        L+ A    G   DA 
Sbjct: 384 TEPDVGTYNVLIEVFGEGGYFKEVVTLFHDMVEENVEPNMGTYEGLIYACGKGGLHEDAK 443

Query: 238 IVYEEIKEAGCNLEPRAVIALIE 260
            +   + E G     +A   +IE
Sbjct: 444 KILLHMDEKGIVPSTKAYTGVIE 466



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/249 (18%), Positives = 118/249 (47%), Gaps = 9/249 (3%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEE-SYEFNLVRRI 68
           S  SY  LI       +  V+L+++E+M + ++ PS  T N+++++C      +  +  +
Sbjct: 176 SVFSYTALINSYGRHGQYEVSLELLERMKKEKVTPSILTYNTVINSCARGGLNWEGLLSL 235

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  + H  ++P+  T+ ++++        D A  +   + E  ++P  + Y  ++  + +
Sbjct: 236 FAEMRHEGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPDITTYRNLVETFGK 295

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYV 185
              ++    +LKEME +   PD  +++ L+   +++ DI   +  + Q++ A        
Sbjct: 296 LNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQEARCVPNAVT 355

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEI 243
           +  L+N Y   G ++  R++ L+ ++   +  +V +   L+      G   + + ++ ++
Sbjct: 356 YSMLLNLYGGHGRYDDVRELFLEMKVS-NTEPDVGTYNVLIEVFGEGGYFKEVVTLFHDM 414

Query: 244 KEAGCNLEP 252
            E   N+EP
Sbjct: 415 VEE--NVEP 421



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/283 (21%), Positives = 127/283 (44%), Gaps = 19/283 (6%)

Query: 7   ITPSSASYKKLITYSCDLLKVHV-ALDVVEQMVQGELVPSTETINSILHACEE--SYEFN 63
           + P+  +Y+ LI Y+C    +H  A  ++  M +  +VPST+    ++ A  +  SYE  
Sbjct: 419 VEPNMGTYEGLI-YACGKGGLHEDAKKILLHMDEKGIVPSTKAYTGVIEAYGQAASYEEA 477

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
           LV  ++  +     KP  ET+ S+I++  +   +  + +++  + E  +      +N ++
Sbjct: 478 LV--MFNTMNEMGSKPTVETYNSLINMFARGGLYKESEAIMWKMGESGVARDRDSFNGVI 535

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFS-----YLIHNCSNEEDIIKYYEQLKSAG 178
            GY +    + A+    E+E+A  +PD +TF      Y      +E +  + + +++++G
Sbjct: 536 EGYRQGGQFEEAIKTYVELEKARFQPDERTFEAVLSVYCTAGLVDESE--EQFREIRASG 593

Query: 179 GQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALAS----HGRTS 234
              +   +  +I  Y     ++ A + VLD E+     S +   +   +      +    
Sbjct: 594 ILPSVMCYCMMIAVYARSNRWDDAYE-VLD-EMVTNKVSNIHQVVGKMMKGDYDDYSNWQ 651

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEE 277
               V++++   GC L  R    L+E L   G+  R  ++L E
Sbjct: 652 MVEYVFDKLNSEGCGLGMRFYNTLLEALWWLGQKERAARVLSE 694



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/192 (19%), Positives = 85/192 (44%), Gaps = 3/192 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  LI    +       + +   MV+  + P+  T   +++AC +       ++I
Sbjct: 386 PDVGTYNVLIEVFGEGGYFKEVVTLFHDMVEENVEPNMGTYEGLIYACGKGGLHEDAKKI 445

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    + P+++ +  +I    +   ++ A  + + + EM   PT   YN+++  + R
Sbjct: 446 LLHMDEKGIVPSTKAYTGVIEAYGQAASYEEALVMFNTMNEMGSKPTVETYNSLINMFAR 505

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYV 185
               + +  ++ +M ++ V  D  +F+ +I         E+ IK Y +L+ A  Q  +  
Sbjct: 506 GGLYKESEAIMWKMGESGVARDRDSFNGVIEGYRQGGQFEEAIKTYVELEKARFQPDERT 565

Query: 186 FMALINAYTTCG 197
           F A+++ Y T G
Sbjct: 566 FEAVLSVYCTAG 577



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/132 (21%), Positives = 63/132 (47%), Gaps = 4/132 (3%)

Query: 78  KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALM 137
           KPN   +  +ISL  +    + +  + +++    +  +   Y A++  Y R    + +L 
Sbjct: 139 KPNEHIYTIIISLLGREGLLEKSTEIFEEMPTHGVPRSVFSYTALINSYGRHGQYEVSLE 198

Query: 138 VLKEMEQANVKPDSQTFSYLIHNCS----NEEDIIKYYEQLKSAGGQITKYVFMALINAY 193
           +L+ M++  V P   T++ +I++C+    N E ++  + +++  G Q     +  L+NA 
Sbjct: 199 LLERMKKEKVTPSILTYNTVINSCARGGLNWEGLLSLFAEMRHEGIQPDIITYNTLLNAC 258

Query: 194 TTCGEFEKARQV 205
              G  ++A  V
Sbjct: 259 ANRGLGDEAEMV 270


>gi|224076660|ref|XP_002304977.1| predicted protein [Populus trichocarpa]
 gi|222847941|gb|EEE85488.1| predicted protein [Populus trichocarpa]
          Length = 381

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 93/178 (52%), Gaps = 4/178 (2%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHH-NLKPNSETFRSMI 88
           A  V ++M++ +   +  + N++L AC  S +F+ V  ++  +     ++P+  ++ +++
Sbjct: 113 ARKVFDEMLERKCARTVLSFNALLGACVNSKKFDEVGGLFRGLSEELEIEPDLVSYNTVM 172

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
               ++   DSA SLLD++++  L P    +N ++ G +          + + M++ NVK
Sbjct: 173 KAFCEMGSLDSAVSLLDEIEKKGLKPDLITFNTLLNGLYANGRFDAGERIWQRMKEKNVK 232

Query: 149 PDSQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203
           PD ++++  +   + E+   D  K  E++KS G +   + + ALI  +   G+ E+A+
Sbjct: 233 PDGRSYNEKLLGLALEKRMKDATKVVEEMKSEGIEFDIFSYNALIRGFVNEGDLEEAK 290



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 91/180 (50%), Gaps = 6/180 (3%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           +  +LEI P   SY  ++   C++  +  A+ +++++ +  L P   T N++L+    + 
Sbjct: 155 LSEELEIEPDLVSYNTVMKAFCEMGSLDSAVSLLDEIEKKGLKPDLITFNTLLNGLYANG 214

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMI---SLNVKIKDFDSAYSLLDDLKEMNLMPTAS 117
            F+   RI+  +   N+KP+  ++   +   +L  ++KD   A  +++++K   +     
Sbjct: 215 RFDAGERIWQRMKEKNVKPDGRSYNEKLLGLALEKRMKD---ATKVVEEMKSEGIEFDIF 271

Query: 118 MYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA 177
            YNA++ G+  + D++ A     E+ ++++KPD  TF  LI     + D+   ++  K A
Sbjct: 272 SYNALIRGFVNEGDLEEAKGWYGEIRKSDIKPDKLTFKTLIPFVVEKGDVAFAFDLCKDA 331



 Score = 45.8 bits (107), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 103/277 (37%), Gaps = 40/277 (14%)

Query: 11  SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINS-ILHACEESYEFNLVRRIY 69
           SA YK  I       K     +++E   Q + + S E  N+ ++     S  F+  R+++
Sbjct: 59  SAIYKDTIRRLAAAKKFRYVEEILENQKQYQDM-SKEGFNARLISLYGSSGMFDNARKVF 117

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL-KEMNLMPTASMYNAIMAGYFR 128
             +          +F +++   V  K FD    L   L +E+ + P    YN +M  +  
Sbjct: 118 DEMLERKCARTVLSFNALLGACVNSKKFDEVGGLFRGLSEELEIEPDLVSYNTVMKAFCE 177

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMA 188
              +  A+ +L E+E+  +KPD  TF+                                 
Sbjct: 178 MGSLDSAVSLLDEIEKKGLKPDLITFN--------------------------------T 205

Query: 189 LINAYTTCGEF---EKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
           L+N     G F   E+  Q + +  +    RS  +  L   LA   R  DA  V EE+K 
Sbjct: 206 LLNGLYANGRFDAGERIWQRMKEKNVKPDGRSYNEKLL--GLALEKRMKDATKVVEEMKS 263

Query: 246 AGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPD 282
            G   +  +  ALI    +EG+L        E+   D
Sbjct: 264 EGIEFDIFSYNALIRGFVNEGDLEEAKGWYGEIRKSD 300


>gi|297811615|ref|XP_002873691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319528|gb|EFH49950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 938

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/248 (21%), Positives = 116/248 (46%), Gaps = 13/248 (5%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I PS      ++   C+  K+  A+D+++QM+  E+ P+  T    L    +    + + 
Sbjct: 604 IKPSLMICNIVVGMLCEKGKMKEAIDILDQMMFMEIHPNLTTYRIFLDMSSKHKRADAIF 663

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           + +  +  + +K + + + ++I+   K+     A  +++D++    +P    +NA+M GY
Sbjct: 664 KTHETLLSYGIKLSRQVYNTLIATLCKLGMTRKAAMVMEDMEARGFVPDTVTFNALMHGY 723

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITK 183
           F    V  AL     M +A + P+  T++ +I   S+    +++ K+  ++KS G +   
Sbjct: 724 FVGSHVGKALSTYSMMMEAGISPNVATYNTIIRGLSDAGLIKEVEKWLSEMKSRGMRPDD 783

Query: 184 YVFMALINAYTTCGEFEKARQV----VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
           + + ALI+     G  +++  +    + D  +P   ++   + L+S  A  G+   A   
Sbjct: 784 FTYNALISGQAKIGNKKESMTIYCEMIADGLVP---KTSTYNVLISEFAKVGKMLQAT-- 838

Query: 240 YEEIKEAG 247
            E +KE G
Sbjct: 839 -ELMKEMG 845



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 99/210 (47%), Gaps = 7/210 (3%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMV-QGELVPSTETINSILHA-CEESYE 61
           ++ + P+  +Y  L+           AL +  QMV +G  +P    + ++L A   ++ +
Sbjct: 287 EMGVYPNHVTYTTLVDSLFKAKDYRHALALYSQMVVRG--IPVDLVVYTVLMAGLFKAGD 344

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
                + + M+   N  PN  T+ +++    K  D  SA  ++  + E ++ P    Y++
Sbjct: 345 LREAEKTFKMLLEDNEVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVFPNVVTYSS 404

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAG 178
           ++ GY +K  ++ A+ ++++ME  NV P+  T+  +I        +E   +  ++++  G
Sbjct: 405 MINGYVKKGMLEEAVSLMRKMEDQNVVPNGFTYGTVIDGLFKAGKQEVASEMSKEMRLIG 464

Query: 179 GQITKYVFMALINAYTTCGEFEKARQVVLD 208
            +   Y+  AL+N     G  ++ + +V D
Sbjct: 465 VEENNYILDALVNHLKRIGRIKEVKGLVKD 494



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 90/218 (41%), Gaps = 12/218 (5%)

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           Y  +    ++P+  TF  M++   K  DF+    L D +K   + P+  + N ++     
Sbjct: 561 YKGMREKGIEPDIATFNIMMNSQRKQGDFEGILKLWDKMKSCGIKPSLMICNIVVGMLCE 620

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYV 185
           K  ++ A+ +L +M    + P+  T+   +   S     + I K +E L S G ++++ V
Sbjct: 621 KGKMKEAIDILDQMMFMEIHPNLTTYRIFLDMSSKHKRADAIFKTHETLLSYGIKLSRQV 680

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHG-----RTSDAIIVY 240
           +  LI      G   KA  V+ D E    +R  V   +      HG         A+  Y
Sbjct: 681 YNTLIATLCKLGMTRKAAMVMEDME----ARGFVPDTVTFNALMHGYFVGSHVGKALSTY 736

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
             + EAG +        +I  L+  G +  + + L E+
Sbjct: 737 SMMMEAGISPNVATYNTIIRGLSDAGLIKEVEKWLSEM 774



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 59/303 (19%), Positives = 123/303 (40%), Gaps = 47/303 (15%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA----------- 55
           I+  + +Y  +I+  C+      A   + +MV+  ++P T + N+++             
Sbjct: 157 ISVDTVTYNTVISGLCEHGLADEAYQFLSEMVKIGILPDTVSFNTLIDGFCKVGNFARAK 216

Query: 56  --CEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLM 113
              +E  E NL+     +  ++NL    E +R M+     +  FD               
Sbjct: 217 ALVDEISELNLITHTILISSYYNLHAIEEAYRDMV-----MSGFD--------------- 256

Query: 114 PTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKY 170
           P    +++I+    +   V    ++L+EME+  V P+  T++ L+ +    +D    +  
Sbjct: 257 PDVVTFSSIINRLCKDGKVMEGGLLLREMEEMGVYPNHVTYTTLVDSLFKAKDYRHALAL 316

Query: 171 YEQLKSAGGQITKYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSA 226
           Y Q+   G  +   V+  L+      G+  +A    + ++ D E+P        +ALV  
Sbjct: 317 YSQMVVRGIPVDLVVYTVLMAGLFKAGDLREAEKTFKMLLEDNEVP---NVVTYTALVDG 373

Query: 227 LASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYW 284
           L   G  S A  +  ++ E   ++ P  V   ++I     +G L   + L+ ++ D +  
Sbjct: 374 LCKAGDLSSAEFIITQMLEK--SVFPNVVTYSSMINGYVKKGMLEEAVSLMRKMEDQNVV 431

Query: 285 MDG 287
            +G
Sbjct: 432 PNG 434



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/132 (21%), Positives = 64/132 (48%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS 86
           V  AL     M++  + P+  T N+I+    ++     V +    +    ++P+  T+ +
Sbjct: 729 VGKALSTYSMMMEAGISPNVATYNTIIRGLSDAGLIKEVEKWLSEMKSRGMRPDDFTYNA 788

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           +IS   KI +   + ++  ++    L+P  S YN +++ + +   +  A  ++KEM +  
Sbjct: 789 LISGQAKIGNKKESMTIYCEMIADGLVPKTSTYNVLISEFAKVGKMLQATELMKEMGKRR 848

Query: 147 VKPDSQTFSYLI 158
           V P++ T+  +I
Sbjct: 849 VSPNTSTYCTMI 860



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 55/257 (21%), Positives = 111/257 (43%), Gaps = 26/257 (10%)

Query: 77  LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGAL 136
           + PN  T+R  + ++ K K  D+ +   + L    +  +  +YN ++A   +    + A 
Sbjct: 639 IHPNLTTYRIFLDMSSKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTRKAA 698

Query: 137 MVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAY 193
           MV+++ME     PD+ TF+ L+H     S+    +  Y  +  AG       +  +I   
Sbjct: 699 MVMEDMEARGFVPDTVTFNALMHGYFVGSHVGKALSTYSMMMEAGISPNVATYNTIIRGL 758

Query: 194 TTCGEFEKARQVVLDAEIPVKSRSE-----VKSALVSALASHGRTSDAIIVYEEIKEAGC 248
           +  G  ++  + + +    +KSR         +AL+S  A  G   +++ +Y E+   G 
Sbjct: 759 SDAGLIKEVEKWLSE----MKSRGMRPDDFTYNALISGQAKIGNKKESMTIYCEMIADGL 814

Query: 249 NLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPD-----YWMDGCCRLILHC-VRF 298
             +      LI      G++ +  +L++E+      P+       + G C+L  H  V +
Sbjct: 815 VPKTSTYNVLISEFAKVGKMLQATELMKEMGKRRVSPNTSTYCTMISGLCKLCTHPEVEW 874

Query: 299 KQ----LSSATDLLKQL 311
            +    L+ A  LLK++
Sbjct: 875 NKKAMYLAEAKGLLKEM 891



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 65/324 (20%), Positives = 136/324 (41%), Gaps = 27/324 (8%)

Query: 116 ASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH----NCSNEEDIIKYY 171
            S+++ +   Y     + GA   L  M    V PD   ++ LIH    N    + +   Y
Sbjct: 58  VSLFHTLFRLYLSCGRLYGAARTLSAMCTFGVVPDLCLWNSLIHQFNVNGLVHDQVSLVY 117

Query: 172 EQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHG 231
            ++ + G     +    LI++    G+   A  ++ +  I V + +   + ++S L  HG
Sbjct: 118 SKMIACGVSPDVFALNVLIHSLCKVGQLSFAISLLRNRVISVDTVT--YNTVISGLCEHG 175

Query: 232 RTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRL 291
              +A     E+ + G   +  +   LI+     G   R   L++E+ + +        L
Sbjct: 176 LADEAYQFLSEMVKIGILPDTVSFNTLIDGFCKVGNFARAKALVDEISELN--------L 227

Query: 292 ILHCVRFKQLSSATDLLKQLKDKFKDDEMAM----EYHFSEIFCQIATTDPPDVQIGLDL 347
           I H +    L S+   L  +++ ++D  M+        FS I  ++   D   ++ GL L
Sbjct: 228 ITHTI----LISSYYNLHAIEEAYRDMVMSGFDPDVVTFSSIINRLCK-DGKVMEGGLLL 282

Query: 348 LQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFL 407
            +   +E+G+ P+      L+ +   A+D + A  ++ +    G+P +++ Y  +     
Sbjct: 283 REM--EEMGVYPNHVTYTTLVDSLFKAKDYRHALALYSQMVVRGIPVDLVVYTVLMAGLF 340

Query: 408 ASGNRKSASKLLSKMPKDD--PHV 429
            +G+ + A K    + +D+  P+V
Sbjct: 341 KAGDLREAEKTFKMLLEDNEVPNV 364



 Score = 42.4 bits (98), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 47/278 (16%), Positives = 117/278 (42%), Gaps = 4/278 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   ++  +I   C   KV     ++ +M +  + P+  T  +++ +  ++ ++     +
Sbjct: 257 PDVVTFSSIINRLCKDGKVMEGGLLLREMEEMGVYPNHVTYTTLVDSLFKAKDYRHALAL 316

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           Y  +    +  +   +  +++   K  D   A      L E N +P    Y A++ G  +
Sbjct: 317 YSQMVVRGIPVDLVVYTVLMAGLFKAGDLREAEKTFKMLLEDNEVPNVVTYTALVDGLCK 376

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYV 185
             D+  A  ++ +M + +V P+  T+S +I+    +   E+ +    +++        + 
Sbjct: 377 AGDLSSAEFIITQMLEKSVFPNVVTYSSMINGYVKKGMLEEAVSLMRKMEDQNVVPNGFT 436

Query: 186 FMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +  +I+     G+ E A ++  +   I V+  + +  ALV+ L   GR  +   + +++ 
Sbjct: 437 YGTVIDGLFKAGKQEVASEMSKEMRLIGVEENNYILDALVNHLKRIGRIKEVKGLVKDMV 496

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPD 282
             G  L+     +LI+     G+    +   EE+ + +
Sbjct: 497 SKGVTLDHINYTSLIDVFFKGGDEEAALSWAEEMQEKE 534



 Score = 39.7 bits (91), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 53/98 (54%), Gaps = 4/98 (4%)

Query: 84  FRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME 143
           + S+I +  K  D ++A S  ++++E  +      YN +++G  +   V GA    K M 
Sbjct: 507 YTSLIDVFFKGGDEEAALSWAEEMQEKEMPWDVVSYNVLISGLLKFGKV-GADWAYKGMR 565

Query: 144 QANVKPDSQTFSYLIHNCSNEED---IIKYYEQLKSAG 178
           +  ++PD  TF+ ++++   + D   I+K ++++KS G
Sbjct: 566 EKGIEPDIATFNIMMNSQRKQGDFEGILKLWDKMKSCG 603


>gi|242051246|ref|XP_002463367.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
 gi|241926744|gb|EER99888.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
          Length = 543

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 82/161 (50%), Gaps = 4/161 (2%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
            + PN  T+ ++IS++ K  D   A  L  ++     MP+   YN +M GY +K  ++ A
Sbjct: 372 GVPPNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREA 431

Query: 136 LMVLKEMEQANVKPDSQTFSYLIHN-CSNEE-DI-IKYYEQLKSAGGQITKYVFMALINA 192
               KEME+  + PD  T++ L+H  C N + D+ +K +E++K  G +     + ALI+ 
Sbjct: 432 ERFRKEMEKKGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTALISG 491

Query: 193 YTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGR 232
               G  E+A Q+  D  +  +     + SALV +L +  R
Sbjct: 492 LAKEGRSEEAFQLYDDMLKAGLTPDDSLYSALVGSLHTDNR 532



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 68/334 (20%), Positives = 133/334 (39%), Gaps = 49/334 (14%)

Query: 98  DSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYL 157
           D A +LLD++    +   A  YN+++  Y R+KD      +L+ ME   ++    T++ L
Sbjct: 149 DDARALLDEMPRHGVRLNALCYNSLLDCYVRRKDDARVQELLEIMENGGIEATVGTYTIL 208

Query: 158 IHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPV 213
           + + S   DI K     +++K+       Y++ A+INAY   G   +A +V  +     +
Sbjct: 209 VDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGNVRRASEVFDECVGNGI 268

Query: 214 KSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQ 273
           +        L++     G+   A ++  +++  G           + H       N++I 
Sbjct: 269 EPNERTYGVLINGFCKIGQMEAAEMLLADMQGRG-----------VGH-------NQIIF 310

Query: 274 LLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAME---YHFSEIF 330
                   +  +DG CR               D    LK K   ++M +E   Y ++ + 
Sbjct: 311 --------NTMIDGYCR-----------QGMVD--NALKVKAAMEKMGIELDVYTYNTLA 349

Query: 331 CQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENA 390
           C +   +          L  I  E G+PP+      L+       D+  A  +++E    
Sbjct: 350 CGLCRVNR---MAEAKTLLHIMIEKGVPPNYVTYTTLISIHCKEGDMVEARRLFREMAGK 406

Query: 391 GLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424
           G   +V++Y  M   ++  G+ + A +   +M K
Sbjct: 407 GAMPSVVTYNVMMDGYIKKGSIREAERFRKEMEK 440



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 63/307 (20%), Positives = 122/307 (39%), Gaps = 56/307 (18%)

Query: 18  ITYSCDLLKVHVALDVVE-QMVQGELVPSTETINSILHACEESYEFNLVRR---IYPMIC 73
           ++ + D+ KV   +D ++ + V G++   T  IN+   A         VRR   ++    
Sbjct: 212 LSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGN-------VRRASEVFDECV 264

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
            + ++PN  T+  +I+   KI   ++A  LL D++   +     ++N ++ GY R+  V 
Sbjct: 265 GNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMIDGYCRQGMVD 324

Query: 134 GALMVLKEME-----------------------------------QANVKPDSQTFSYLI 158
            AL V   ME                                   +  V P+  T++ LI
Sbjct: 325 NALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYTTLI 384

Query: 159 HNCSNEEDII---KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAE----I 211
                E D++   + + ++   G   +   +  +++ Y   G   +A +   + E    +
Sbjct: 385 SIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFRKEMEKKGLV 444

Query: 212 PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRL 271
           P        ++LV     +G+   A+ ++EE+K  G      A  ALI  L  EG     
Sbjct: 445 P---DVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTALISGLAKEGRSEEA 501

Query: 272 IQLLEEV 278
            QL +++
Sbjct: 502 FQLYDDM 508



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 78/179 (43%), Gaps = 6/179 (3%)

Query: 1   MHAKLE--ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEE 58
           +H  +E  + P+  +Y  LI+  C    +  A  +  +M     +PS  T N ++    +
Sbjct: 365 LHIMIEKGVPPNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIK 424

Query: 59  SYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM 118
                   R    +    L P+  T+ S++  +      D A  L +++K     P    
Sbjct: 425 KGSIREAERFRKEMEKKGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVA 484

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN--CSNEEDIIKYYEQLK 175
           Y A+++G  ++   + A  +  +M +A + PD   +S L+ +    N +DI  +++Q+K
Sbjct: 485 YTALISGLAKEGRSEEAFQLYDDMLKAGLTPDDSLYSALVGSLHTDNRKDI--HHKQIK 541



 Score = 42.4 bits (98), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 38/196 (19%), Positives = 86/196 (43%), Gaps = 5/196 (2%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEF 62
           K+ I     +Y  L    C + ++  A  ++  M++  + P+  T  +++   C+E  + 
Sbjct: 335 KMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYTTLISIHCKEG-DM 393

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
              RR++  +      P+  T+  M+   +K      A     ++++  L+P    Y ++
Sbjct: 394 VEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFRKEMEKKGLVPDVYTYASL 453

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGG 179
           + G+     V  AL + +EM+    +P+   ++ LI   + E   E+  + Y+ +  AG 
Sbjct: 454 VHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTALISGLAKEGRSEEAFQLYDDMLKAGL 513

Query: 180 QITKYVFMALINAYTT 195
                ++ AL+ +  T
Sbjct: 514 TPDDSLYSALVGSLHT 529


>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 118/270 (43%), Gaps = 6/270 (2%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           KL   P+ A++  L+   C   K   AL + ++M Q  + P+T     IL    ++   +
Sbjct: 194 KLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTD 253

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
            V R+   +      P+S T  +++    K+   D A++LL   ++   +     Y++++
Sbjct: 254 DVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLI 313

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY----YEQLKSAGG 179
            G FR K         ++M +A ++PD   ++ LI     E  ++ Y       +   G 
Sbjct: 314 DGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFC-EVGMVDYALNMLNDMTQRGL 372

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAII 238
               Y + ALI  +   G  +KAR + L+ ++      S   + L+  +  +G   +A  
Sbjct: 373 SPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQ 432

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGEL 268
           ++ +++  GC+       ALI+ L   GEL
Sbjct: 433 IFNQMENLGCSPSIMTFNALIDGLCKAGEL 462



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 74/368 (20%), Positives = 142/368 (38%), Gaps = 53/368 (14%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           +K +  P+S +Y  LI   C    +  A  +  QM      PS  T N+++    ++ E 
Sbjct: 403 SKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGEL 462

Query: 63  NLVRRI-YPMICHHN------LKPNSETFRSMISLNVKIKDFD------SAYSLLDDLKE 109
              R + Y M    N      L   ++      SL   ++          AY LL  L +
Sbjct: 463 EEARHLFYKMEIGKNPSLFLRLSQGADRVMDTASLQTMVERLCESGLILKAYKLLMQLAD 522

Query: 110 MNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEED 166
             ++P    YN ++ G+ + K++ GA  + +E++     PDS T+  LI   H    EED
Sbjct: 523 SGVVPDIMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREED 582

Query: 167 IIKYYEQLKSAGGQITKYVFMALIN----------AYTTC-------------------- 196
             +  +Q+   G   +  V+  L+           A++                      
Sbjct: 583 AFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKYLRSLPSQEDETLKLAEE 642

Query: 197 ----GEFEKARQVVLDAEIPVKSRSEVKSAL-VSALASHGRTSDAIIVYEEIKEAGCNLE 251
               GE EKA + +L+    + +       + +  L    R+ +A+ ++  +KE   ++ 
Sbjct: 643 HFEKGELEKAVRCLLEMNFKLNNFEIAPYTIWLIGLCQARRSEEALKIFLVLKECQMDVN 702

Query: 252 PRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWM--DGCCRLILHCVRFKQLSSATDLLK 309
           P + + LI  L  +G L   + +     +  + +    C +L+   +   ++  A DLL 
Sbjct: 703 PPSCVMLINGLCKDGNLEMAVDIFLYTLEKGFMLMPRICNQLLRSLILQDKMKHALDLLN 762

Query: 310 QLKDKFKD 317
           ++     D
Sbjct: 763 RMNSAGYD 770



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 84/438 (19%), Positives = 171/438 (39%), Gaps = 55/438 (12%)

Query: 38  VQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKP-----------NSETFRS 86
           +  E++   ET+N +  A E+   F L   I   +     +P              +FRS
Sbjct: 37  ISNEVLTVMETVNPMEDALEKLAPF-LSSEIVNDVMREQRRPELGFRFFIWTTRRRSFRS 95

Query: 87  MISLNVKI----KD--FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLK 140
            ++ N+ I    KD  FD+ + +L++LK  N+      ++ ++A Y +    + A+    
Sbjct: 96  WVTHNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFG 155

Query: 141 EMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCG 197
           +M+    KPD  T++ ++H    +E     +  Y Q+        +  F+ L+N     G
Sbjct: 156 KMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNG 215

Query: 198 EFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI 256
           + + A ++  +  +  +   + + + ++S L    RT D   +   +K +GC  +     
Sbjct: 216 KTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCN 275

Query: 257 ALIEHLNSEGELNRLIQLLEEVHDPDYWMD--GCCRLILHCVRFKQLSSATDLLKQLKDK 314
           AL++     G+++    LL+      Y +   G   LI    R K+     +  +++   
Sbjct: 276 ALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKA 335

Query: 315 FKDDEMAMEYHFSEIFCQIATTD--------------PPDV-----------QIG-LDLL 348
             + ++ +       FC++   D               PD             +G LD  
Sbjct: 336 GIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKA 395

Query: 349 QFIKDELG----LPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYK 404
           + ++ E+      P S      + G C N   L  A  I+ + EN G   +++++  +  
Sbjct: 396 RSLQLEISKNDCFPTSCTYTILICGMCRNGL-LDEARQIFNQMENLGCSPSIMTFNALID 454

Query: 405 AFLASGNRKSASKLLSKM 422
               +G  + A  L  KM
Sbjct: 455 GLCKAGELEEARHLFYKM 472



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/265 (20%), Positives = 104/265 (39%), Gaps = 23/265 (8%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  I P    Y  LI   C++  V  AL+++  M Q  L P T   N+++    +    +
Sbjct: 334 KAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLD 393

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             R +   I  ++  P S T+  +I    +    D A  + + ++ +   P+   +NA++
Sbjct: 394 KARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALI 453

Query: 124 AGYFRKKDVQGALMVLKEME-------------QANVKPDSQTFSYLIHNCSNEEDIIKY 170
            G  +  +++ A  +  +ME              A+   D+ +   ++        I+K 
Sbjct: 454 DGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTASLQTMVERLCESGLILKA 513

Query: 171 YE---QLKSAGGQITKYVFMALINAYTTC----GEFEKARQVVLDAEIPVKSRSEVKSAL 223
           Y+   QL  +G       +  LIN +       G F+  R++ L    P    S     L
Sbjct: 514 YKLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAFKLFRELQLKGHSP---DSVTYGTL 570

Query: 224 VSALASHGRTSDAIIVYEEIKEAGC 248
           +       R  DA  V +++ + GC
Sbjct: 571 IDGFHRVDREEDAFRVLDQMVKNGC 595


>gi|297606902|ref|NP_001059180.2| Os07g0213300 [Oryza sativa Japonica Group]
 gi|215767816|dbj|BAH00045.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255677604|dbj|BAF21094.2| Os07g0213300 [Oryza sativa Japonica Group]
          Length = 677

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/379 (20%), Positives = 163/379 (43%), Gaps = 14/379 (3%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  ++   C   +V     + + MV   + P+    NS+L A            I
Sbjct: 186 PDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAI 245

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           + +I  + L+P+  ++ S+++   +    + A  + + +K+ +  P    YNA++  Y  
Sbjct: 246 FNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGS 305

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYV 185
              ++ A+ +L EME+  ++PD  + S L+  C     I +     E  +S G  +    
Sbjct: 306 AGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVA 365

Query: 186 FMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           + + I +Y + G++EKA ++     E  VK  +   + L+S  +  G+ ++++  +E++ 
Sbjct: 366 YNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDMV 425

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSA 304
           ++  +       +LI     +G+L+        +        GC   +L      Q  +A
Sbjct: 426 DSKVSSTKEVYSSLIYSYIKQGKLSEAESTFSSMKK-----SGCFPDVLTYTTLIQAYNA 480

Query: 305 TDLLKQLKDKFKDDEMAMEYHFSEIFCQI---ATTDPPDVQIGLDLLQFIKDELGLPPSR 361
               K+  D FK+ E+        I C     A     + +  L L++F+K +  +P ++
Sbjct: 481 GGGWKRAWDLFKEMEVN-GIPPDAIICSSLMEAFNKGGEPERVLQLMEFMKKK-SIPLNQ 538

Query: 362 KCLDFLLGACVNARDLKRA 380
           K    ++ +C   RD K A
Sbjct: 539 KSYFEIIASCTMIRDWKTA 557



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 79/408 (19%), Positives = 163/408 (39%), Gaps = 47/408 (11%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           +V  A  +  +M +    P  +  NS++HA   + ++     I   +    + P   T+ 
Sbjct: 26  QVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDMLRAAIPPTRTTYN 85

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           ++I+      ++  A  L   + E  + P    +N +++          A+   + M+ A
Sbjct: 86  NVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISYFEIMKGA 145

Query: 146 NVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK-----YVFMALINAYTTCGEFE 200
           NV  D+ T + +IH         +  E   S   + TK       + +++++Y   G+ E
Sbjct: 146 NVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVE 205

Query: 201 KARQV--VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
             + +  ++ AE  VK      ++L+ A AS G   +A+ ++  IK+ G  L P  +++ 
Sbjct: 206 NCKAIFDLMVAE-GVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNG--LRPD-IVSY 261

Query: 259 IEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDD 318
              LN+ G                              R  Q   A ++  ++K   K+ 
Sbjct: 262 TSLLNAYG------------------------------RSAQPEKAREVFNKMK---KNS 288

Query: 319 EMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLK 378
               +  ++ +     +       +GL L +  KD  G+ P    +  LL AC   R + 
Sbjct: 289 CKPNKVSYNALIDAYGSAGMLKEAVGL-LHEMEKD--GIQPDVVSISTLLAACGRCRQIT 345

Query: 379 RAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDD 426
           R   I +   + G+  N ++Y    K++L+ G+ + A +L + M + +
Sbjct: 346 RIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRESN 393



 Score = 38.9 bits (89), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 71/167 (42%), Gaps = 4/167 (2%)

Query: 118 MYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKYYEQL 174
           +Y  ++  Y R   V  A  +  EM++   KPD+  ++ LIH  S        I   E +
Sbjct: 13  IYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDM 72

Query: 175 KSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRT 233
             A    T+  +  +INA    G ++KA ++     E  V       + ++SAL +  + 
Sbjct: 73  LRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQY 132

Query: 234 SDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           S AI  +E +K A    +   +  +I  L   G+    I+L   + +
Sbjct: 133 SKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRE 179


>gi|242083798|ref|XP_002442324.1| hypothetical protein SORBIDRAFT_08g018230 [Sorghum bicolor]
 gi|241943017|gb|EES16162.1| hypothetical protein SORBIDRAFT_08g018230 [Sorghum bicolor]
          Length = 647

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 122/278 (43%), Gaps = 7/278 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHV--ALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           + P++ SY  +I  +C    V +   L    QM+Q  L P  +T NS+L AC  +     
Sbjct: 54  LRPTTVSYNAVID-ACGKGGVDLRFTLGYFRQMLQDGLCPDRKTFNSLLAACSRAGHLED 112

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
            R ++  + H     +  T+ + +    K  + + A  ++ D++  N+ P    Y+ +M 
Sbjct: 113 ARTVFDEMIHLGSGRDIYTYNTFVDAICKCGNMELATQVVLDMEANNIKPNVVTYSTLMD 172

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQI 181
           G+ + +    AL + ++M+   ++ D   ++ L+         ++I    E +++ G + 
Sbjct: 173 GFSKLEKYDEALKLREKMKSLGIQLDRVCYNTLLAIYVKTGKYDEIATVCEDMENLGIEK 232

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVY 240
               + +LIN Y   G  +    +V D      + S +  S L+   +  G   DA  VY
Sbjct: 233 DTVTYNSLINGYGKQGRLDMVAFLVQDMRAQGVAPSVLTYSTLIDIYSKAGMHGDAFNVY 292

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            + KE+G   +     + I+ L   G +   + LL+E+
Sbjct: 293 LDFKESGLKADVVLFSSFIDTLAKNGLVECALSLLDEM 330



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/223 (21%), Positives = 106/223 (47%), Gaps = 5/223 (2%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHAC-EESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
           A+ V+E M    L P+T + N+++ AC +   +       +  +    L P+ +TF S++
Sbjct: 42  AMGVLESMKGAGLRPTTVSYNAVIDACGKGGVDLRFTLGYFRQMLQDGLCPDRKTFNSLL 101

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
           +   +    + A ++ D++  +        YN  +    +  +++ A  V+ +ME  N+K
Sbjct: 102 AACSRAGHLEDARTVFDEMIHLGSGRDIYTYNTFVDAICKCGNMELATQVVLDMEANNIK 161

Query: 149 PDSQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           P+  T+S L+   S  E   + +K  E++KS G Q+ +  +  L+  Y   G++++   V
Sbjct: 162 PNVVTYSTLMDGFSKLEKYDEALKLREKMKSLGIQLDRVCYNTLLAIYVKTGKYDEIATV 221

Query: 206 VLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
             D E + ++  +   ++L++     GR      + ++++  G
Sbjct: 222 CEDMENLGIEKDTVTYNSLINGYGKQGRLDMVAFLVQDMRAQG 264


>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 712

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/349 (20%), Positives = 142/349 (40%), Gaps = 46/349 (13%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYE 61
            ++ + P+  ++  LI   C +  +  A +++E+MV+    P+  T  +++   C++ + 
Sbjct: 290 VQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWT 349

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMIS-------LN----------------------- 91
               R    ++   N KPN  T+  MI+       LN                       
Sbjct: 350 EKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTC 409

Query: 92  -----VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
                 K  +F  AY L+D + +    P    YNAI+ G  +K     A  +L+   ++ 
Sbjct: 410 LIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSG 469

Query: 147 VKPDSQTFSYLIHNCSNEED---IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203
           +  D  T++ LI     + D    +  + ++   G Q   + +  LI  +    + E++ 
Sbjct: 470 LHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESE 529

Query: 204 QVVLDAE----IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALI 259
           ++  +A     +P K   E  ++++      G  S AI  + ++++ GC  +     ALI
Sbjct: 530 KLFEEAVGLGLLPTK---ETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALI 586

Query: 260 EHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLL 308
             L +E +L+   QL E + D         R+ L     KQ  SAT ++
Sbjct: 587 SGLCNESKLDEACQLYETMIDNGLSPCEVTRVTLAYEYCKQGDSATAMI 635



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 130/312 (41%), Gaps = 9/312 (2%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  +I   C   K++ A  ++ +M +  LVP+T T   ++    ++  F     +
Sbjct: 367 PNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYEL 426

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
             ++      PN  T+ ++I    K   F  AY LL    +  L      Y  +++ + R
Sbjct: 427 MDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEFCR 486

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYV 185
           + D + AL +   M +  ++PD  T++ LI     +   E+  K +E+    G   TK  
Sbjct: 487 QTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLGLLPTKET 546

Query: 186 FMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           + ++I  Y   G    A +      +   K  S    AL+S L +  +  +A  +YE + 
Sbjct: 547 YTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISGLCNESKLDEACQLYETMI 606

Query: 245 EAGCNLEPRAV--IALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLS 302
           + G  L P  V  + L      +G+    + +LE + +   W+     LI      K++ 
Sbjct: 607 DNG--LSPCEVTRVTLAYEYCKQGDSATAMIILERL-EKKLWIRTVNTLIRKLCSEKKVG 663

Query: 303 SATDLLKQLKDK 314
            A     +L DK
Sbjct: 664 VAALFFHKLLDK 675



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/283 (19%), Positives = 113/283 (39%), Gaps = 40/283 (14%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESY---EF 62
           + P++ +Y  LI   C       A ++++ M +    P+  T N+I+   C++      +
Sbjct: 400 LVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAY 459

Query: 63  NLVRR-------------------------------IYPMICHHNLKPNSETFRSMISLN 91
            L+RR                               I+  +    L+P+  T+  +I+  
Sbjct: 460 KLLRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATF 519

Query: 92  VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151
            + K  + +  L ++   + L+PT   Y +++ GY R   +  A+    +M     KPDS
Sbjct: 520 CRQKKVEESEKLFEEAVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDS 579

Query: 152 QTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
            T+  LI    NE   ++  + YE +   G    +   + L  AY  C + + A  +++ 
Sbjct: 580 ITYGALISGLCNESKLDEACQLYETMIDNGLSPCEVTRVTL--AYEYCKQGDSATAMIIL 637

Query: 209 AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLE 251
             +  K      + L+  L S  +   A + + ++ +   N++
Sbjct: 638 ERLEKKLWIRTVNTLIRKLCSEKKVGVAALFFHKLLDKDLNVD 680



 Score = 38.5 bits (88), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 47/232 (20%), Positives = 98/232 (42%), Gaps = 16/232 (6%)

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
           +H L   +     +I + + +   D A  + D++ +  ++P ++ Y  ++ GY R   + 
Sbjct: 186 NHGLVLKARILNFVIDVALALGFVDYAEKVFDEMLDRAVVPDSTSYKLMVVGYCRMGRIS 245

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALI 190
                LK+M +     D+ T + +I   S +  + +   Y+++    G       F +LI
Sbjct: 246 DVDRWLKDMIERGYAVDNATCTLMISTFSEKGFVNRAFWYFKKWVQMGLNPNLINFSSLI 305

Query: 191 NAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
           N     G  ++A +++ +      K      +AL+  L   G T  A  ++ ++  +  N
Sbjct: 306 NGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSD-N 364

Query: 250 LEPR--AVIALIEHLNSEGELNR----LIQLLEEVHDPDY-----WMDGCCR 290
            +P       +I     E +LNR    LI++ E+   P+       +DG C+
Sbjct: 365 YKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCK 416


>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
 gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
          Length = 428

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 132/320 (41%), Gaps = 18/320 (5%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVR 66
            P+  +Y  LI   C   + H A+  V++M++    P   T NS++H  C  +   +   
Sbjct: 77  APNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGL 136

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +  ++      P+  T+ + IS   K    D    +L+++    + P    + +I++G 
Sbjct: 137 VLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGL 196

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS--NEEDII-KYYEQLKSAGGQITK 183
            +   +  A  V K M +    PDS T+S ++ N S  N  D + +  E +  +G     
Sbjct: 197 CKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALS 256

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             +  LI+A    G+ E A      A E          +A + AL   G+   A  +   
Sbjct: 257 ATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLG 316

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCR--------LILH 294
           + E+G      +   +I+ L   G ++   +L  ++ D      GCC+        LI  
Sbjct: 317 MIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLD-----SGCCKPDVIFFNTLISG 371

Query: 295 CVRFKQLSSATDLLKQLKDK 314
             +  +LS A  LLK++K K
Sbjct: 372 FCKAGRLSQAQQLLKEMKAK 391



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 93/201 (46%), Gaps = 5/201 (2%)

Query: 83  TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM 142
           T+ ++I    K  D D+A +LL  + +    P    Y A++ G  + +    A+  +K M
Sbjct: 47  TYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRM 106

Query: 143 EQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYV-FMALINAYTTCGE 198
            ++  +PD  T++ LIH     +  +D     ++L    G+I   V +   I+     G+
Sbjct: 107 LRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGK 166

Query: 199 FEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIA 257
            +K  +++ + +    S   V   +++S L    R  DA  V++ + E GC  +      
Sbjct: 167 LDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSI 226

Query: 258 LIEHLNSEGELNRLIQLLEEV 278
           ++++L+    L+ + ++LE +
Sbjct: 227 MLDNLSRANRLDTVEEVLEHM 247



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 43/247 (17%), Positives = 100/247 (40%), Gaps = 6/247 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I+P   ++  +I+  C   ++  A  V + M++   VP + T + +L     +   + V 
Sbjct: 182 ISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVE 241

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +        S T+  +I   ++  D +SA    +   E   +     +NA +   
Sbjct: 242 EVLEHMVKSGHYALSATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGAL 301

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
            R      A  +L  M ++   P+  +++++I       N +D  K   ++  +G     
Sbjct: 302 CRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPD 361

Query: 184 YVFM-ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVY 240
            +F   LI+ +   G   +A+Q++ + +       +V +   ++   +  G    A ++ 
Sbjct: 362 VIFFNTLISGFCKAGRLSQAQQLLKEMKAKNICVPDVVTYNTMIDGQSKFGSLKQAKLLL 421

Query: 241 EEIKEAG 247
           EE++  G
Sbjct: 422 EEMQAVG 428


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 115/253 (45%), Gaps = 12/253 (4%)

Query: 4    KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHAC----EES 59
            KL   P+  +   L+   C   ++  A+ +V+QM      P+T T N+++H      + S
Sbjct: 758  KLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKAS 817

Query: 60   YEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMY 119
                L+ R+    C    +P+  T+  +++   K  D D A++LL+ +++  L P   +Y
Sbjct: 818  EAMALIDRMVAKGC----QPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIY 873

Query: 120  NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKS 176
            N I+ G  + K +  AL + KEME   ++P+  T+S LI    N     D  +    +  
Sbjct: 874  NTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE 933

Query: 177  AGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSD 235
                   + F ALI+A+   G+  +A ++  +  +  +       S+L++    H R  +
Sbjct: 934  RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDE 993

Query: 236  AIIVYEEIKEAGC 248
            A  ++E +    C
Sbjct: 994  AKQMFEFMVSKHC 1006



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 85/417 (20%), Positives = 170/417 (40%), Gaps = 47/417 (11%)

Query: 5    LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
            L I  +  +Y  LI   C   ++ +AL V+ +M++    P+  T++S+L+    S   + 
Sbjct: 724  LGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISE 783

Query: 65   VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
               +   +     +PN+ TF ++I           A +L+D +      P    Y  ++ 
Sbjct: 784  AVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVN 843

Query: 125  GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQI 181
            G  ++ D   A  +L +MEQ  ++P    ++ +I   C  +  +D +  ++++++ G + 
Sbjct: 844  GLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRP 903

Query: 182  TKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
                + +LI+     G +  A +++ D  E  +       SAL+ A    G+  +A  +Y
Sbjct: 904  NVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLY 963

Query: 241  EEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRF 298
            +E+ +   +++P  V   +LI        L+   Q+ E +               HC  F
Sbjct: 964  DEMVKR--SIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSK------------HC--F 1007

Query: 299  KQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLP 358
              + +   L+K    K+K  E  ME  F E+                        + GL 
Sbjct: 1008 PDVVTYNTLIKGFC-KYKRVEEGMEV-FREM-----------------------SQRGLV 1042

Query: 359  PSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSA 415
             +    + L+     A D   A  I+KE  + G+P N+++Y  +      +G  + A
Sbjct: 1043 GNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKA 1099



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/285 (19%), Positives = 120/285 (42%), Gaps = 4/285 (1%)

Query: 6    EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
            +I P   ++  LI       K+  A  + ++MV+  + PS  T +S+++        +  
Sbjct: 935  KINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEA 994

Query: 66   RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            ++++  +   +  P+  T+ ++I    K K  +    +  ++ +  L+     YN ++ G
Sbjct: 995  KQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQG 1054

Query: 126  YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQIT 182
             F+  D   A  + KEM    V P+  T++ L+   C N   E  +  +E L+ +  + T
Sbjct: 1055 LFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPT 1114

Query: 183  KYVFMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYE 241
             Y +  +I      G+ E    +  +  +  VK      + ++S     G   +A  +++
Sbjct: 1115 IYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFK 1174

Query: 242  EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
            E+KE G          LI     +G+     +L++E+    +  D
Sbjct: 1175 EMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGD 1219



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/423 (17%), Positives = 167/423 (39%), Gaps = 53/423 (12%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           PS   + +L++    L K  V + + ++M    +     T N +++     ++ +L   I
Sbjct: 186 PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSI 245

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +     +P+  T  S+++   +      A SL+D + E+   P    YNAI+    +
Sbjct: 246 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCK 305

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYV--- 185
            K V  A    KE+E+  ++P+  T++ L++   N     ++ +  +     I K +   
Sbjct: 306 TKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSS---RWSDAARLLSDMIKKKITPN 362

Query: 186 ---FMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
              + AL++A+   G+  +A+++  +   + +       S+L++ L  H R  +A  +++
Sbjct: 363 VITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFD 422

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQL 301
            +   GC                          L +V   +  ++G C+        K++
Sbjct: 423 LMVSKGC--------------------------LADVVSYNTLINGFCKA-------KRV 449

Query: 302 SSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIK--DELGLPP 359
                L +++  +             + F Q    D           +F    D  G+ P
Sbjct: 450 EDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQ--------EFFSQMDFFGISP 501

Query: 360 SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLL 419
                + LLG   +  +L++A +I+++ +   +  ++++Y  + +    +G  + A  L 
Sbjct: 502 DIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLF 561

Query: 420 SKM 422
             +
Sbjct: 562 CSL 564



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/287 (18%), Positives = 123/287 (42%), Gaps = 4/287 (1%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           KL   P   +   L+   C   +V  A+ +V++MV+    P     N+I+ +  ++   N
Sbjct: 251 KLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVN 310

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
                +  I    ++PN  T+ ++++       +  A  LL D+ +  + P    Y+A++
Sbjct: 311 DAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALL 370

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQ 180
             + +   V  A  + +EM + ++ PD  T+S LI+  C ++  ++  + ++ + S G  
Sbjct: 371 DAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCL 430

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
                +  LIN +      E   ++  + ++  + S +   + L+      G    A   
Sbjct: 431 ADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEF 490

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
           + ++   G + +      L+  L   GEL + + + E++   +  +D
Sbjct: 491 FSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLD 537



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 72/156 (46%), Gaps = 6/156 (3%)

Query: 7    ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
            + P+  +Y  L+   C   K+  A+ V E + + ++ P+  T N ++    ++ +   V 
Sbjct: 1076 VPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK---VE 1132

Query: 67   RIYPMICHHNLK---PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              + + C+ +LK   P+   + +MIS   +    + A +L  ++KE   +P +  YN ++
Sbjct: 1133 DGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLI 1192

Query: 124  AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159
                R  D + +  ++KEM       D+ T   + +
Sbjct: 1193 RARLRDGDREASAELIKEMRSCGFAGDASTIGLVTN 1228



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/158 (17%), Positives = 68/158 (43%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
            ++ I P   +Y  LI   C   ++  A  + + MV    +    + N++++   ++   
Sbjct: 390 VRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRV 449

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
               +++  +    L  N+ T+ ++I    +  D D A      +    + P    YN +
Sbjct: 450 EDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNIL 509

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160
           + G     +++ AL++ ++M++  +  D  T++ +I  
Sbjct: 510 LGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRG 547



 Score = 39.7 bits (91), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 69/352 (19%), Positives = 139/352 (39%), Gaps = 43/352 (12%)

Query: 91  NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD 150
           ++K+ D   A  L  D+ +    P+   +N +++   + K     + + K+ME   ++ D
Sbjct: 166 DIKLND---AIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRND 222

Query: 151 SQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVL 207
             TF+ +I+    C      +    ++   G +  +    +L+N +        A  +V 
Sbjct: 223 LYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVD 282

Query: 208 D-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
              EI  K      +A++ +L    R +DA   ++EI+  G  + P  V           
Sbjct: 283 KMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKG--IRPNVVT---------- 330

Query: 267 ELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHF 326
                  L+  + +   W D   RL+   ++ K+++        L D F  +   +E   
Sbjct: 331 ----YTALVNGLCNSSRWSDA-ARLLSDMIK-KKITPNVITYSALLDAFVKNGKVLEAK- 383

Query: 327 SEIFCQIA--TTDPPDVQI-----GLDLLQFIKDE---LGLPPSRKCL------DFLLGA 370
            E+F ++   + DP  V       GL L   I +      L  S+ CL      + L+  
Sbjct: 384 -ELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLING 442

Query: 371 CVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
              A+ ++    +++E    GL  N ++Y  + + F  +G+   A +  S+M
Sbjct: 443 FCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQM 494


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 115/253 (45%), Gaps = 12/253 (4%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHAC----EES 59
           KL   P+  +   L+   C   ++  A+ +V+QM      P+T T N+++H      + S
Sbjct: 144 KLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKAS 203

Query: 60  YEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMY 119
               L+ R+    C    +P+  T+  +++   K  D D A++LL+ +++  L P   +Y
Sbjct: 204 EAMALIDRMVAKGC----QPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIY 259

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKS 176
           N I+ G  + K +  AL + KEME   ++P+  T+S LI    N     D  +    +  
Sbjct: 260 NTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE 319

Query: 177 AGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSD 235
                  + F ALI+A+   G+  +A ++  +  +  +       S+L++    H R  +
Sbjct: 320 RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDE 379

Query: 236 AIIVYEEIKEAGC 248
           A  ++E +    C
Sbjct: 380 AKQMFEFMVSKHC 392



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 84/417 (20%), Positives = 169/417 (40%), Gaps = 47/417 (11%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           L I  +  +Y  LI   C   ++ +AL V+ +M++    P+  T++S+L+    S   + 
Sbjct: 110 LGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISE 169

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
              +   +     +PN+ TF ++I           A +L+D +      P    Y  ++ 
Sbjct: 170 AVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVN 229

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQI 181
           G  ++ D   A  +L +MEQ  ++P    ++ +I       + +D +  ++++++ G + 
Sbjct: 230 GLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRP 289

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
               + +LI+     G +  A +++ D  E  +       SAL+ A    G+  +A  +Y
Sbjct: 290 NVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLY 349

Query: 241 EEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRF 298
           +E+ +   +++P  V   +LI        L+   Q+ E +               HC  F
Sbjct: 350 DEMVKR--SIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSK------------HC--F 393

Query: 299 KQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLP 358
             + +   L+K    K+K  E  ME  F E+                        + GL 
Sbjct: 394 PDVVTYNTLIKGFC-KYKRVEEGMEV-FREM-----------------------SQRGLV 428

Query: 359 PSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSA 415
            +    + L+     A D   A  I+KE  + G+P N+++Y  +      +G  + A
Sbjct: 429 GNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKA 485



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/285 (19%), Positives = 120/285 (42%), Gaps = 4/285 (1%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +I P   ++  LI       K+  A  + ++MV+  + PS  T +S+++        +  
Sbjct: 321 KINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEA 380

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           ++++  +   +  P+  T+ ++I    K K  +    +  ++ +  L+     YN ++ G
Sbjct: 381 KQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQG 440

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQIT 182
            F+  D   A  + KEM    V P+  T++ L+   C N   E  +  +E L+ +  + T
Sbjct: 441 LFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPT 500

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYE 241
            Y +  +I      G+ E    +  +  +  VK      + ++S     G   +A  +++
Sbjct: 501 IYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFK 560

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
           E+KE G          LI     +G+     +L++E+    +  D
Sbjct: 561 EMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGD 605



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 72/156 (46%), Gaps = 6/156 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  L+   C   K+  A+ V E + + ++ P+  T N ++    ++ +   V 
Sbjct: 462 VPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK---VE 518

Query: 67  RIYPMICHHNLK---PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             + + C+ +LK   P+   + +MIS   +    + A +L  ++KE   +P +  YN ++
Sbjct: 519 DGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLI 578

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159
               R  D + +  ++KEM       D+ T   + +
Sbjct: 579 RARLRDGDREASAELIKEMRSCGFAGDASTIGLVTN 614


>gi|297739653|emb|CBI29835.3| unnamed protein product [Vitis vinifera]
          Length = 852

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/267 (19%), Positives = 118/267 (44%), Gaps = 15/267 (5%)

Query: 24  LLKVHVALDVVEQ-------MVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHN 76
           ++++H   ++V+Q       M +    P  ET N++++A   + ++     I   +    
Sbjct: 168 MIRLHARHNIVDQARGLFFEMQKWRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAA 227

Query: 77  LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGAL 136
           + P+  T+ ++I+      ++  A ++   + E  + P    +N +++ Y R       L
Sbjct: 228 IPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVL 287

Query: 137 MVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYV--FMALIN 191
              + M+  N++PD+ T + +I+           I  +  +K    +    V  F  +I+
Sbjct: 288 SYFELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIH 347

Query: 192 AYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEIKEAGCN 249
            Y+ CG+ E   Q   +  +    +  + S  AL+ A ASHG   +A  V+ EIK+ G +
Sbjct: 348 LYSVCGQIENC-QTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFH 406

Query: 250 LEPRAVIALIEHLNSEGELNRLIQLLE 276
            +  +  +L+      G+  + +++ E
Sbjct: 407 PDVVSYTSLLNAYGKSGKPEKAMKVFE 433



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/293 (21%), Positives = 129/293 (44%), Gaps = 26/293 (8%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  SY  LI        +  A++++ +M +  + P+  +I ++L AC    +   ++ +
Sbjct: 442 PNLVSYNALIDAYGSKGLLTEAVEILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSV 501

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
                   +K N+  + S I   + + ++D A SL   ++   + P    YN +++G  +
Sbjct: 502 LSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKVKPDPVTYNVLISGCCK 561

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYV 185
                 AL  L EM    +    + +S +I   S +  + +    + ++K  G +     
Sbjct: 562 MSKYGEALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVIT 621

Query: 186 FMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           + A+I+AY     +EKA  + L+ E   V+  S   S+L+ A    G+ +  +++ E ++
Sbjct: 622 YTAMIHAYDVAENWEKASALFLEMETDDVQPDSIACSSLMRAFNKGGQPAKVLVLAEFMR 681

Query: 245 E--------------AGCNL--EPRAVIALIEHLN------SEGELNRLIQLL 275
           E              + C+L  E R +I LI+ +       S G LN+L+  L
Sbjct: 682 EKKIPFNNSSFFEMVSACSLLREWREIIGLIKLMEPSISVVSIGLLNQLLHFL 734



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/280 (18%), Positives = 115/280 (41%), Gaps = 6/280 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQ--GELVPSTETINSILHACEESYEFNL 64
           I P + +   +I     L +   A+D+   M +   E  P   T  +I+H      +   
Sbjct: 298 IRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIEN 357

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
            +  +  +    LKPN  ++ ++I           A+S+ +++K+    P    Y +++ 
Sbjct: 358 CQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLN 417

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQI 181
            Y +    + A+ V + M + + KP+  +++ LI    ++    + ++   +++  G Q 
Sbjct: 418 AYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERNGVQP 477

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVY 240
                  L+ A   CG+  K + V+  AE+  +K  +   ++ + +  S G    A+ +Y
Sbjct: 478 NIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLY 537

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
             ++      +P     LI       +    +  L+E+ D
Sbjct: 538 RAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMD 577


>gi|224143015|ref|XP_002324819.1| predicted protein [Populus trichocarpa]
 gi|222866253|gb|EEF03384.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 130/282 (46%), Gaps = 15/282 (5%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S  KL+ +  +  K   A  +   +++G   PS  +  ++L A      F+ +  I   +
Sbjct: 15  SRTKLMNFLVEKGKPQEAESIFYSLIEGGHKPSLISYTTLLAALTMQKRFDSIYSIISQV 74

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
             + + P+S  F ++I+   +  + +SA      ++E  + PT S YN ++ GY      
Sbjct: 75  EENGMNPDSIFFNAVINAFSESGNMESAMETFWKMQENGMKPTTSTYNTLIKGYGIAGKP 134

Query: 133 QGALMVLKEMEQ-ANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKYVFMA 188
           + ++ +L+ M Q  NVKP+ +T++ L+    N++ I + +    ++ ++G Q     +  
Sbjct: 135 EESVKLLELMSQEGNVKPNLRTYNVLVRAWCNKKRITEAWNVVYKMIASGIQPDVVTYNT 194

Query: 189 LINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           +  AY   G  ++A  V+L+ +   V+        ++S     GR  +A+     +KE G
Sbjct: 195 IATAYAQKGALDQAEGVILEMQNNGVQPNERTCGIIMSGYCKEGRIREALRFAYRMKELG 254

Query: 248 CNLEPRAVI------ALIEHLNSEGELNRLIQLLEEVH-DPD 282
             + P  VI        +  ++ +G ++ ++ L+EE    PD
Sbjct: 255 --IHPNLVIFNSLIKGFVAIMDRDG-VDEVLNLMEEFGVKPD 293



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 115/254 (45%), Gaps = 10/254 (3%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M  +  + P+  +Y  L+   C+  ++  A +VV +M+   + P   T N+I  A  +  
Sbjct: 144 MSQEGNVKPNLRTYNVLVRAWCNKKRITEAWNVVYKMIASGIQPDVVTYNTIATAYAQKG 203

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
             +    +   + ++ ++PN  T   ++S   K      A      +KE+ + P   ++N
Sbjct: 204 ALDQAEGVILEMQNNGVQPNERTCGIIMSGYCKEGRIREALRFAYRMKELGIHPNLVIFN 263

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSA 177
           +++ G+    D  G   VL  ME+  VKPD  TFS +++  S     E   + ++ +  A
Sbjct: 264 SLIKGFVAIMDRDGVDEVLNLMEEFGVKPDVITFSTIMNAWSTAGFMEKCREIFDDMVKA 323

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE----VKSALVSALASHGRT 233
           G +   + +  L   Y    E EKA +++      +KS  +    + + ++S   S G+ 
Sbjct: 324 GIEPDAHAYSILAKGYVRAQEPEKAEELLTTM---IKSGFQPNVVIFTTVISGWCSAGKM 380

Query: 234 SDAIIVYEEIKEAG 247
             A+ V++++ + G
Sbjct: 381 DYAVRVFDKMCQRG 394



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 113/258 (43%), Gaps = 17/258 (6%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHAC------EESY 60
           + P S  +  +I    +   +  A++   +M +  + P+T T N+++         EES 
Sbjct: 79  MNPDSIFFNAVINAFSESGNMESAMETFWKMQENGMKPTTSTYNTLIKGYGIAGKPEES- 137

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
               V+ +  M    N+KPN  T+  ++      K    A++++  +    + P    YN
Sbjct: 138 ----VKLLELMSQEGNVKPNLRTYNVLVRAWCNKKRITEAWNVVYKMIASGIQPDVVTYN 193

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSA 177
            I   Y +K  +  A  V+ EM+   V+P+ +T   ++     E  I   +++  ++K  
Sbjct: 194 TIATAYAQKGALDQAEGVILEMQNNGVQPNERTCGIIMSGYCKEGRIREALRFAYRMKEL 253

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDA 236
           G      +F +LI  +    + +   +V+ L  E  VK      S +++A ++ G     
Sbjct: 254 GIHPNLVIFNSLIKGFVAIMDRDGVDEVLNLMEEFGVKPDVITFSTIMNAWSTAGFMEKC 313

Query: 237 IIVYEEIKEAGCNLEPRA 254
             +++++ +AG  +EP A
Sbjct: 314 REIFDDMVKAG--IEPDA 329


>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 667

 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 128/283 (45%), Gaps = 30/283 (10%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M + L++ P+S   +     S   L+  +   +  Q+      P+ +T++ +L  C    
Sbjct: 1   MFSALKLKPASVGSRLFCVGS---LQTQINKTIWHQLKS----PTHQTLHHLLDQCSSMK 53

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
              LV   +  I  H L     T   ++SL V+  D   A+ L D + +    P   MYN
Sbjct: 54  RLKLV---HAQIILHGLAAQVVTLGKLLSLCVQEGDLRYAHLLFDQIPQ----PNKFMYN 106

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE----EDIIKYYEQLKS 176
            ++ GY    D   +L++ ++M  A   P+  TF +++  C+ +    E +I + + +K 
Sbjct: 107 HLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIKL 166

Query: 177 AGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSD 235
             G     V  A++ AY  C     ARQV  D    +  R+ V  +++++  +  G   +
Sbjct: 167 GMGP-HACVQNAILTAYVACRLILSARQVFDD----ISDRTIVSWNSMIAGYSKMGFCDE 221

Query: 236 AIIVYEEIKEAGCNLEPRAVIALI----EHLNSEGELNRLIQL 274
           AI++++E+ + G   +   +++L+    +H N   +L R + L
Sbjct: 222 AILLFQEMLQLGVEADVFTLVSLLSASSKHCNL--DLGRFVHL 262



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/322 (20%), Positives = 136/322 (42%), Gaps = 30/322 (9%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+++  +M    ++P   T+ SIL  C  + +  L ++ +  IC + +  +     S+I 
Sbjct: 354 AVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICDNIITVSVTLCNSLID 413

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K     +A  +   + E N++     +N I+         + A+ + K M+ + + P
Sbjct: 414 MYAKCGALQTAIDIFFGMPEKNVVS----WNVIIGALALHGFGEEAIEMFKSMQASGLYP 469

Query: 150 DSQTFSYLIHNCSNEE--DIIKYYEQLKSAGGQITKYV--FMALINAYTTCGEFEKARQV 205
           D  TF+ L+  CS+    D+ +YY  +  +  +I+  V  +  +++     G   +A  +
Sbjct: 470 DEITFTGLLSACSHSGLVDMGRYYFDIMISTFRISPGVEHYACMVDLLGRGGFLGEAMTL 529

Query: 206 VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
           +   ++PVK    V  AL+ A   +G    A  + +++ E G       +  L+ ++ SE
Sbjct: 530 I--QKMPVKPDVVVWGALLGACRIYGNLEIAKQIMKQLLELG--RFNSGLYVLLSNMYSE 585

Query: 266 GELNRLIQLLEEVHDPD----------YWMDGCCRLIL-----HCVR---FKQLSSATDL 307
            +    ++ + ++ D              +DGCC   +     HC     +  L    D 
Sbjct: 586 SQRWDDMKKIRKIMDDSGIKKCRAISFIEIDGCCYQFMVDDKRHCASTGIYSILDQLMDH 645

Query: 308 LKQLKDKFKDDEMAMEYHFSEI 329
           LK +    K  E+   Y+ S I
Sbjct: 646 LKSVGYPCKSSEVEEIYYSSNI 667



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 100/220 (45%), Gaps = 16/220 (7%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           +L +  QMV    +P+  T   +L AC     +     ++       + P++    ++++
Sbjct: 121 SLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIKLGMGPHACVQNAILT 180

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
             V  +   SA  + DD+ +  ++     +N+++AGY +      A+++ +EM Q  V+ 
Sbjct: 181 AYVACRLILSARQVFDDISDRTIVS----WNSMIAGYSKMGFCDEAILLFQEMLQLGVEA 236

Query: 150 DSQTFSYLIHNCSNE--EDIIKYYE-QLKSAGGQITKYVFMALINAYTTCGEFEKARQV- 205
           D  T   L+   S     D+ ++    +   G +I   V  ALI+ Y  CG  + A+ V 
Sbjct: 237 DVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVF 296

Query: 206 --VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
             +LD ++         +++V+A A+ G   +A+ ++  +
Sbjct: 297 DQMLDKDVV------SWTSMVNAYANQGLVENAVQIFNHM 330



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 52/253 (20%), Positives = 101/253 (39%), Gaps = 43/253 (16%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+ + ++M+Q  +     T+ S+L A  +    +L R ++  I    ++ +S    ++I 
Sbjct: 222 AILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALID 281

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANV-- 147
           +  K      A  + D + + +++   SM NA    Y  +  V+ A+ +   M   NV  
Sbjct: 282 MYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNA----YANQGLVENAVQIFNHMPVKNVVS 337

Query: 148 -----------------------------KPDSQTFSYLIHNCSNEEDI-IKYYEQLKSA 177
                                         PD  T   ++  CSN  D+ +         
Sbjct: 338 WNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYIC 397

Query: 178 GGQITKYVFM--ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTS 234
              IT  V +  +LI+ Y  CG    A Q  +D    +  ++ V  + ++ ALA HG   
Sbjct: 398 DNIITVSVTLCNSLIDMYAKCG----ALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGE 453

Query: 235 DAIIVYEEIKEAG 247
           +AI +++ ++ +G
Sbjct: 454 EAIEMFKSMQASG 466


>gi|359481811|ref|XP_002278330.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Vitis vinifera]
          Length = 848

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/267 (19%), Positives = 118/267 (44%), Gaps = 15/267 (5%)

Query: 24  LLKVHVALDVVEQ-------MVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHN 76
           ++++H   ++V+Q       M +    P  ET N++++A   + ++     I   +    
Sbjct: 168 MIRLHARHNIVDQARGLFFEMQKWRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAA 227

Query: 77  LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGAL 136
           + P+  T+ ++I+      ++  A ++   + E  + P    +N +++ Y R       L
Sbjct: 228 IPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVL 287

Query: 137 MVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYV--FMALIN 191
              + M+  N++PD+ T + +I+           I  +  +K    +    V  F  +I+
Sbjct: 288 SYFELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIH 347

Query: 192 AYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEIKEAGCN 249
            Y+ CG+ E   Q   +  +    +  + S  AL+ A ASHG   +A  V+ EIK+ G +
Sbjct: 348 LYSVCGQIENC-QTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFH 406

Query: 250 LEPRAVIALIEHLNSEGELNRLIQLLE 276
            +  +  +L+      G+  + +++ E
Sbjct: 407 PDVVSYTSLLNAYGKSGKPEKAMKVFE 433



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/293 (21%), Positives = 129/293 (44%), Gaps = 26/293 (8%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  SY  LI        +  A++++ +M +  + P+  +I ++L AC    +   ++ +
Sbjct: 442 PNLVSYNALIDAYGSKGLLTEAVEILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSV 501

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
                   +K N+  + S I   + + ++D A SL   ++   + P    YN +++G  +
Sbjct: 502 LSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKVKPDPVTYNVLISGCCK 561

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYV 185
                 AL  L EM    +    + +S +I   S +  + +    + ++K  G +     
Sbjct: 562 MSKYGEALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVIT 621

Query: 186 FMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           + A+I+AY     +EKA  + L+ E   V+  S   S+L+ A    G+ +  +++ E ++
Sbjct: 622 YTAMIHAYDVAENWEKASALFLEMETDDVQPDSIACSSLMRAFNKGGQPAKVLVLAEFMR 681

Query: 245 E--------------AGCNL--EPRAVIALIEHLN------SEGELNRLIQLL 275
           E              + C+L  E R +I LI+ +       S G LN+L+  L
Sbjct: 682 EKKIPFNNSSFFEMVSACSLLREWREIIGLIKLMEPSISVVSIGLLNQLLHFL 734



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/280 (18%), Positives = 115/280 (41%), Gaps = 6/280 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQ--GELVPSTETINSILHACEESYEFNL 64
           I P + +   +I     L +   A+D+   M +   E  P   T  +I+H      +   
Sbjct: 298 IRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIEN 357

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
            +  +  +    LKPN  ++ ++I           A+S+ +++K+    P    Y +++ 
Sbjct: 358 CQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLN 417

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQI 181
            Y +    + A+ V + M + + KP+  +++ LI    ++    + ++   +++  G Q 
Sbjct: 418 AYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERNGVQP 477

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVY 240
                  L+ A   CG+  K + V+  AE+  +K  +   ++ + +  S G    A+ +Y
Sbjct: 478 NIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLY 537

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
             ++      +P     LI       +    +  L+E+ D
Sbjct: 538 RAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMD 577


>gi|297833228|ref|XP_002884496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330336|gb|EFH60755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 547

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 100/234 (42%), Gaps = 24/234 (10%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A++   +M    + P+   +  +L AC          R +   C    + N     S+I 
Sbjct: 191 AIEAFREMQSIGVKPNETIMVDLLVACG---------RCFDPYCQSKFEFNVILATSLID 241

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K  D  +A  L D + E NL+     +N+I+ GY +  D + A+ +  +M    + P
Sbjct: 242 MYAKCGDMRTARYLFDGMPERNLVS----WNSIITGYSQNGDAEEAMCMFSDMLDLGIAP 297

Query: 150 DSQTF-----SYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204
           D  TF     + +I  CS     I  Y  +   G      +  AL+N Y   G  E A++
Sbjct: 298 DKVTFFSVIRASMIQGCSQLGQTIHAY--VSKTGFVKDAAIVCALVNMYAKTGNAESAKK 355

Query: 205 VVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
           +  D E   K  +   + ++  LASHG  + A+ +++ ++E G N  P  +  L
Sbjct: 356 MFEDLE---KKDTIAWTVVIIGLASHGHGNKALSIFQRMQEEG-NATPDGITYL 405



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 82/187 (43%), Gaps = 23/187 (12%)

Query: 75  HNLKPNSETFRSMISLNVKIKDFDSA------YSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           H L   S   R++I L+ ++ DF +        S    + E    P+  ++N+++ GY  
Sbjct: 25  HGLMIKSSVIRNVIPLS-RLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIRGYSN 83

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKS--------AGGQ 180
             +   AL+  +EM +    PD  TF Y++  CS   DI     Q  S         G +
Sbjct: 84  SPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDI-----QFGSCVHGFVVKTGFE 138

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
           +  YV   L++ Y  CGE     +V  D  IP K       +L+S   ++ R SDAI  +
Sbjct: 139 VNMYVSTCLLHMYMCCGEVNWGLRVFED--IP-KLNVVAWGSLISGFVNNNRFSDAIEAF 195

Query: 241 EEIKEAG 247
            E++  G
Sbjct: 196 REMQSIG 202



 Score = 42.7 bits (99), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 41/223 (18%), Positives = 99/223 (44%), Gaps = 11/223 (4%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +IT          A+ +   M+   + P   T  S++ A        L + I+  +
Sbjct: 266 SWNSIITGYSQNGDAEEAMCMFSDMLDLGIAPDKVTFFSVIRASMIQGCSQLGQTIHAYV 325

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
                  ++    +++++  K  + +SA  + +DL++ + +     +  ++ G       
Sbjct: 326 SKTGFVKDAAIVCALVNMYAKTGNAESAKKMFEDLEKKDTIA----WTVVIIGLASHGHG 381

Query: 133 QGALMVLKEM-EQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLKSAGG-QITKYVFM 187
             AL + + M E+ N  PD  T+  +++ CS+    E+  +Y+ +++   G + T   + 
Sbjct: 382 NKALSIFQRMQEEGNATPDGITYLGVLYACSHIGLVEEGQRYFAEMRDLYGLEPTVEHYG 441

Query: 188 ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASH 230
            +++  +  G FE+A ++V    +PV+  + +  AL++    H
Sbjct: 442 CMVDILSRAGRFEEAERLV--KTMPVQPTANIWGALLNGCEIH 482



 Score = 39.7 bits (91), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 33/218 (15%), Positives = 92/218 (42%), Gaps = 13/218 (5%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL   ++M++    P   T   +L AC    +      ++  +     + N      ++ 
Sbjct: 90  ALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLH 149

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           + +   + +    + +D+ ++N++     + ++++G+        A+   +EM+   VKP
Sbjct: 150 MYMCCGEVNWGLRVFEDIPKLNVVA----WGSLISGFVNNNRFSDAIEAFREMQSIGVKP 205

Query: 150 DSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA 209
           +      L+  C       + ++    +  +    +  +LI+ Y  CG+   AR  + D 
Sbjct: 206 NETIMVDLLVACG------RCFDPYCQSKFEFNVILATSLIDMYAKCGDMRTARY-LFDG 258

Query: 210 EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
            +P ++     S +++  + +G   +A+ ++ ++ + G
Sbjct: 259 -MPERNLVSWNS-IITGYSQNGDAEEAMCMFSDMLDLG 294


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/404 (19%), Positives = 168/404 (41%), Gaps = 53/404 (13%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A   +E+M +   V +  + N ++H   +S        +Y  +    LKP+ +TF +++ 
Sbjct: 178 APSALEKMREAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMV 237

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
            + K ++  +   LL++++ M L P    Y   +    R   +  A  ++K M+     P
Sbjct: 238 ASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGP 297

Query: 150 DSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D  T++ LI   C+    +D +  + ++KS+  +  K  ++ L++ ++ CG  +K  ++ 
Sbjct: 298 DVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIW 357

Query: 207 LDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
            + E    +   V  + LV+AL   GR ++A  + + +++ G                  
Sbjct: 358 TEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQG------------------ 399

Query: 266 GELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDE-----M 320
                   +L  +H  +  + G        +R  +L  A DL   ++    +       +
Sbjct: 400 --------VLPNLHTYNTLISG-------LLRANRLDDALDLFSNMESLGVEPTAYTYIL 444

Query: 321 AMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRA 380
            ++YH          +  P     L+  + +K   G+ P+    +  L +      L  A
Sbjct: 445 LIDYH--------GKSGHPGK--ALETFEKMKAR-GIAPNIVACNASLYSLAEMGRLGEA 493

Query: 381 HLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424
             ++ E +++GL  + ++Y  M K +   G    A KLLS+M K
Sbjct: 494 KAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSK 537



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 119/287 (41%), Gaps = 47/287 (16%)

Query: 4    KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
            +L + P+   Y  LI    ++  V VA ++ E+M      P T T NS++ A  +S + N
Sbjct: 783  ELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKIN 842

Query: 64   LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL-------------------- 103
             +  +Y  +     KPN+ T+  +IS  VK    D A  L                    
Sbjct: 843  ELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLI 902

Query: 104  --------LDDLKEM-------NLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
                    LDD  EM          P +++YN ++ GY +   V  A    K M +  ++
Sbjct: 903  DGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIR 962

Query: 149  PDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
            PD ++++ L+         +D + Y+E+LK AG       +  +IN        E+A  +
Sbjct: 963  PDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSL 1022

Query: 206  VLDAEIPVKSRSEVK-----SALVSALASHGRTSDAIIVYEEIKEAG 247
              +    +++R  V      ++L+  L   G   +A  +YEE++  G
Sbjct: 1023 FHE----MQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIG 1065



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/312 (20%), Positives = 129/312 (41%), Gaps = 43/312 (13%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  LI   C   K+  A+ +  +M      P   T  ++L    +    + V +I
Sbjct: 297 PDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKI 356

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +      P+  TF  +++   K    + A+ LLD +++  ++P    YN +++G  R
Sbjct: 357 WTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLR 416

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLI--HNCSNE-----------------EDII- 168
              +  AL +   ME   V+P + T+  LI  H  S                    +I+ 
Sbjct: 417 ANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVA 476

Query: 169 ------------------KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-A 209
                               + +LKS+G       +  ++  Y+  G+ ++A +++ + +
Sbjct: 477 CNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMS 536

Query: 210 EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGE 267
           ++  +    V ++L+  L   GR  +A  ++  ++E   NL P  V    L+  L  EG+
Sbjct: 537 KVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEM--NLAPTVVTYNILLAGLGKEGQ 594

Query: 268 LNRLIQLLEEVH 279
           + + +QL E ++
Sbjct: 595 IQKAVQLFESMN 606



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 98/235 (41%), Gaps = 38/235 (16%)

Query: 9    PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
            P++ +Y  +I+      ++  A+D+   +V G+  P+  T   ++    +S   +    +
Sbjct: 858  PNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEM 917

Query: 69   YPMICHHNLKPNSETFRSMISLNVKIKDFDSA------------------YSLLDD---- 106
            +  + H+  +PNS  +  +++   K+   D+A                  Y++L D    
Sbjct: 918  FDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCI 977

Query: 107  -------------LKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQT 153
                         LK+  L P    YN ++ G  R +  + AL +  EM+   + PD  T
Sbjct: 978  AGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYT 1037

Query: 154  FSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
            ++ LI N       E+  K YE+L+  G +   + + ALI  YT  G  E A  +
Sbjct: 1038 YNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGI 1092



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 77/420 (18%), Positives = 171/420 (40%), Gaps = 27/420 (6%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           L + P++ +Y  LI Y         AL+  E+M    + P+    N+ L++  E      
Sbjct: 433 LGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGE 492

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
            + ++  +    L P+S T+  M+    K+   D A  LL ++ ++   P   + N+++ 
Sbjct: 493 AKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLID 552

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQI 181
             ++   V+ A  +   ME+ N+ P   T++ L+     E  I   ++ +E +   G   
Sbjct: 553 TLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSP 612

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIV 239
               F  L++      E + A ++       +  R +V +   ++       +  +AI +
Sbjct: 613 NTITFNTLLDCLCKNDEVDLALKMFYKMT-TMNCRPDVLTFNTIIHGFIKQNQIKNAIWL 671

Query: 240 YEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVH-------DPDYWMDGCCR 290
           + ++K+    L P  V    L+  +   G++    ++ E+         D  +W D    
Sbjct: 672 FHQMKKL---LRPDHVTLCTLLPGVIKSGQIEDAFRITEDFFYQVGSNIDRSFWEDVMGG 728

Query: 291 LILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQF 350
           ++      K +     L+   +   KDD + +     ++ C+   T      +  ++   
Sbjct: 729 ILTEAGTEKAILFGERLV--CRAICKDDSVLIP--IIKVLCKHKKT-----SVARNVFVK 779

Query: 351 IKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASG 410
              ELG+ P+ K  + L+   +   +++ A  +++E ++AG   +  +Y  +  A   SG
Sbjct: 780 FTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSG 839



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/317 (19%), Positives = 124/317 (39%), Gaps = 42/317 (13%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           +K++  P       LI       +V  A  +  +M +  L P+  T N +L    +  + 
Sbjct: 536 SKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQI 595

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
               +++  +  H   PN+ TF +++    K  + D A  +   +  MN  P    +N I
Sbjct: 596 QKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTI 655

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIK----YYEQLK 175
           + G+ ++  ++ A+ +  +M++  ++PD  T   L+         ED  +    ++ Q+ 
Sbjct: 656 IHGFIKQNQIKNAIWLFHQMKKL-LRPDHVTLCTLLPGVIKSGQIEDAFRITEDFFYQVG 714

Query: 176 S----------AGGQITKY----------------------VFMALINAYTTCGEFEKAR 203
           S           GG +T+                       V + +I       +   AR
Sbjct: 715 SNIDRSFWEDVMGGILTEAGTEKAILFGERLVCRAICKDDSVLIPIIKVLCKHKKTSVAR 774

Query: 204 QVVL--DAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEH 261
            V +    E+ VK   +V + L+           A  ++EE+K AGC  +     +LI+ 
Sbjct: 775 NVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDA 834

Query: 262 LNSEGELNRLIQLLEEV 278
               G++N L  L +E+
Sbjct: 835 HGKSGKINELFDLYDEM 851



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 138/337 (40%), Gaps = 44/337 (13%)

Query: 108  KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI--HNCSNE- 164
            KE+ + PT  +YN ++ G+    +V+ A  + +EM+ A   PD+ T++ LI  H  S + 
Sbjct: 782  KELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKI 841

Query: 165  EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SAL 223
             ++   Y+++ + G +     +  +I+        +KA  +  +      S +      L
Sbjct: 842  NELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPL 901

Query: 224  VSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY 283
            +  L   GR  DA  +++ +   GC   P + I  I  +N  G+L  +            
Sbjct: 902  IDGLLKSGRLDDAHEMFDGMVHYGC--RPNSAIYNI-LVNGYGKLGHV------------ 946

Query: 284  WMDGCC----RLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPP 339
              D  C    R++   +R   L S T L+  L    + D+     H+ E   Q A  DP 
Sbjct: 947  --DTACEFFKRMVKEGIR-PDLKSYTILVDILCIAGRVDD---ALHYFEKLKQ-AGLDPD 999

Query: 340  DVQI-----GLDLLQFIKDEL---------GLPPSRKCLDFLLGACVNARDLKRAHLIWK 385
             V       GL   Q  ++ L         G+ P     + L+        ++ A  I++
Sbjct: 1000 LVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYE 1059

Query: 386  EYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
            E +  GL  NV +Y  + + +  SGN + A  +  KM
Sbjct: 1060 ELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKM 1096



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 2/152 (1%)

Query: 7    ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
            I P   SY  L+   C   +V  AL   E++ Q  L P     N +++    S       
Sbjct: 961  IRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEAL 1020

Query: 67   RIYPMICHHNLKPNSETFRSMISLNVKIKD-FDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             ++  + +  + P+  T+ S+I LN+ I    + A  + ++L+ + L P    YNA++ G
Sbjct: 1021 SLFHEMQNRGIVPDLYTYNSLI-LNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRG 1079

Query: 126  YFRKKDVQGALMVLKEMEQANVKPDSQTFSYL 157
            Y    + + A  + K+M      P++ TF+ L
Sbjct: 1080 YTLSGNSELAYGIYKKMMVGGCDPNTGTFAQL 1111


>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
          Length = 579

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 86/461 (18%), Positives = 170/461 (36%), Gaps = 84/461 (18%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K +  P+S++Y  +I   C   +V  A  ++++M    L P+  T+N ++    ++ +  
Sbjct: 115 KKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLE 174

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              +I+         P+  T+ S+I    K    D AY L + + +        +Y +++
Sbjct: 175 EAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLI 234

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK 183
             +F     +    + KE+ +   KPD                                 
Sbjct: 235 RNFFIHGRKEDGHKIFKELIRRGCKPD--------------------------------- 261

Query: 184 YVFMALINAYTTC----GEFEKARQVVLDAE----IP-VKSRSEVKSALVSALASHGRTS 234
              + L+N Y  C    GE EK R +  D      +P V+S     S L+  L   G+  
Sbjct: 262 ---LTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSY----SILIHGLTKAGQAR 314

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYWMDGCCR 290
           +   ++  +K+ G  L+ RA  A+++     G++++  ++LEE+ +    P     G   
Sbjct: 315 ETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGA-- 372

Query: 291 LILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTD------------- 337
           ++    +  +L  A  L ++ K K  +  + +     + F ++   D             
Sbjct: 373 IVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKG 432

Query: 338 -PPDVQIGLDLLQFI---------------KDELGLPPSRKCLDFLLGACVNARDLKRAH 381
             P+V     LL  +                 E+  PP+      L+      +   +A 
Sbjct: 433 LTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAF 492

Query: 382 LIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           + W++ +  GL  NV++Y  M       GN   A  L  + 
Sbjct: 493 VFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERF 533



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 81/164 (49%), Gaps = 10/164 (6%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y  LI     + ++  A  ++E+M++  L P+  T NS+L A  ++ E N       ++C
Sbjct: 405 YSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEIN-----EALVC 459

Query: 74  HHNLK-----PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
             ++K     PN+ T+  +I+   +++ ++ A+    D+++  L+P    Y  +++G  +
Sbjct: 460 FQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAK 519

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE 172
             ++  A  + +  +     PD+ +F+ LI   SN    ++ Y+
Sbjct: 520 VGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQ 563



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/282 (19%), Positives = 118/282 (41%), Gaps = 45/282 (15%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  ++   C   KVH A +++E+M +  + P+  T  +I+    +    +    ++   
Sbjct: 334 AYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEA 393

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               ++ N   + S+I    K+   D AY +L+++ +  L P    +N+++    + +++
Sbjct: 394 KSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEI 453

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMAL 189
             AL+  + M++    P++ T+S LI+     +   K   +++ ++  G        +  
Sbjct: 454 NEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQG-------LVPN 506

Query: 190 INAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
           +  YTT                           ++S LA  G  +DA  ++E  K  G  
Sbjct: 507 VVTYTT---------------------------MISGLAKVGNITDAYSLFERFKANGGI 539

Query: 250 LEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRL 291
            +  +  ALIE +++    NR ++  +       W+D   RL
Sbjct: 540 PDAASFNALIEGMSNA---NRAMEAYQAG-----WLDTTMRL 573



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 74/389 (19%), Positives = 154/389 (39%), Gaps = 52/389 (13%)

Query: 79  PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGAL-- 136
           P +  + +MI        F+ AY LL+ L+E   +P+   +N+I+    +K+ V  AL  
Sbjct: 51  PCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSL 110

Query: 137 --------------------------------MVLKEMEQANVKPDSQTFSYLIHNCSNE 164
                                            +L EME A++ P+  T + ++      
Sbjct: 111 FEVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKA 170

Query: 165 ---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV---VLDAEIPVKSRSE 218
              E+  K +E     G       + +LI+     G+ ++A ++   +LDA     +   
Sbjct: 171 RKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDA--GHNANPV 228

Query: 219 VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           V ++L+     HGR  D   +++E+   GC  +   +   ++ +   GE+ +   + E++
Sbjct: 229 VYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDI 288

Query: 279 HDPDYWMD--GCCRLILHCVRFKQLSSATDLLKQLKDK-FKDDEMAMEYHFSEIFCQIAT 335
               +  D      LI    +  Q    +++   +K + F  D  A      + FC+   
Sbjct: 289 RSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYN-AVVDGFCK--- 344

Query: 336 TDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYN 395
                V    ++L+ +K++  + P+      ++        L  A+++++E ++ G+  N
Sbjct: 345 --SGKVHKAYEILEEMKEKC-VQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELN 401

Query: 396 VLSYLWMYKAFLASGNRKSASKLLSKMPK 424
           V+ Y  +   F   G    A  +L +M K
Sbjct: 402 VVLYSSLIDGFGKVGRIDEAYLILEEMMK 430



 Score = 46.2 bits (108), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 59/122 (48%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  +TP+  ++  L+       +++ AL   + M + +  P+T T + +++      ++N
Sbjct: 430 KKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYN 489

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
                +  +    L PN  T+ +MIS   K+ +   AYSL +  K    +P A+ +NA++
Sbjct: 490 KAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALI 549

Query: 124 AG 125
            G
Sbjct: 550 EG 551



 Score = 45.4 bits (106), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 40/213 (18%), Positives = 91/213 (42%), Gaps = 5/213 (2%)

Query: 75  HNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQG 134
             LKP+  ++ SMI +  K      A  L   ++    +P A  YN ++ GY      + 
Sbjct: 12  QGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFED 71

Query: 135 ALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALIN 191
           A  +L+ + +    P   +F+ ++     +  +   +  +E +K    +     +  +I+
Sbjct: 72  AYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK-DAEPNSSTYNIIID 130

Query: 192 AYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNL 250
                G  E+A +++ + E   +       + +V  L    +  +A  ++E   + GCN 
Sbjct: 131 MLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNP 190

Query: 251 EPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY 283
           +     +LI+ L  +G+++   +L E++ D  +
Sbjct: 191 DCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGH 223


>gi|449436958|ref|XP_004136259.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Cucumis sativus]
 gi|449497032|ref|XP_004160294.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Cucumis sativus]
          Length = 504

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/274 (21%), Positives = 135/274 (49%), Gaps = 9/274 (3%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMI-CHHNLKPNSETFRSMISLNVKIKDFDSAYS 102
           PS + I++ L+   ES   +L R++        NL+PN+  F  ++  + +  D  +A+ 
Sbjct: 152 PSLKAISTCLNLLVESDRVDLARKLLVNARSKLNLRPNTCIFNILVKHHCRNGDLQAAFE 211

Query: 103 LLDDLKEMNL-MPTASMYNAIMAGYFRKKDVQGALMVLKEM-EQANVKPDSQTFSYLIHN 160
           ++ ++K   +  P    Y+ ++ G      ++ A+   +EM  + N+ PD+ T++ LI+ 
Sbjct: 212 VVKEMKSARVSYPNLVTYSTLIGGLCENGKLKEAIEFFEEMVSKDNILPDALTYNILING 271

Query: 161 CSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAE-IPVKSR 216
                 + +     E +KS G     + +  L+N Y   G  ++A++V  + + + +K  
Sbjct: 272 FCQRGKVDRARTILEFMKSNGCSPNVFNYSVLMNGYCKEGRLQEAKEVFNEIKSLGMKPD 331

Query: 217 SEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276
           +   + L++ L   GR  +A  + +++K+  C  +      ++  L  EG  +  + +++
Sbjct: 332 TISYTTLINCLCRTGRVDEATELLQQMKDKDCRADTVTFNVMLGGLCREGRFDEALDMVQ 391

Query: 277 EVHDPDYWMD-GCCRLILHCVRFK-QLSSATDLL 308
           ++    ++++ G  R++L+ +  K +L  AT+LL
Sbjct: 392 KLPFEGFYLNKGSYRIVLNFLTQKGELRKATELL 425



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 110/229 (48%), Gaps = 16/229 (6%)

Query: 78  KPNSETFRSMISLNVKIKDFDSAYSLLDDLK-EMNLMPTASMYNAIMAGYFRKKDVQGAL 136
           KP+ +   + ++L V+    D A  LL + + ++NL P   ++N ++  + R  D+Q A 
Sbjct: 151 KPSLKAISTCLNLLVESDRVDLARKLLVNARSKLNLRPNTCIFNILVKHHCRNGDLQAAF 210

Query: 137 MVLKEMEQANVK-PDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQI-TKYVFMALIN 191
            V+KEM+ A V  P+  T+S LI   C N   ++ I+++E++ S    +     +  LIN
Sbjct: 211 EVVKEMKSARVSYPNLVTYSTLIGGLCENGKLKEAIEFFEEMVSKDNILPDALTYNILIN 270

Query: 192 AYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNL 250
            +   G+ ++AR ++   +    S +    S L++     GR  +A  V+ EIK  G   
Sbjct: 271 GFCQRGKVDRARTILEFMKSNGCSPNVFNYSVLMNGYCKEGRLQEAKEVFNEIKSLGMKP 330

Query: 251 EPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD---------GCCR 290
           +  +   LI  L   G ++   +LL+++ D D   D         G CR
Sbjct: 331 DTISYTTLINCLCRTGRVDEATELLQQMKDKDCRADTVTFNVMLGGLCR 379



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 98/210 (46%), Gaps = 7/210 (3%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGEL-VPSTETINSILHA-CEESY 60
           +KL + P++  +  L+ + C    +  A +VV++M    +  P+  T ++++   CE   
Sbjct: 182 SKLNLRPNTCIFNILVKHHCRNGDLQAAFEVVKEMKSARVSYPNLVTYSTLIGGLCENGK 241

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
               +     M+   N+ P++ T+  +I+   +    D A ++L+ +K     P    Y+
Sbjct: 242 LKEAIEFFEEMVSKDNILPDALTYNILINGFCQRGKVDRARTILEFMKSNGCSPNVFNYS 301

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC----SNEEDIIKYYEQLKS 176
            +M GY ++  +Q A  V  E++   +KPD+ +++ LI NC       ++  +  +Q+K 
Sbjct: 302 VLMNGYCKEGRLQEAKEVFNEIKSLGMKPDTISYTTLI-NCLCRTGRVDEATELLQQMKD 360

Query: 177 AGGQITKYVFMALINAYTTCGEFEKARQVV 206
              +     F  ++      G F++A  +V
Sbjct: 361 KDCRADTVTFNVMLGGLCREGRFDEALDMV 390


>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 625

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 4/242 (1%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           + TP+  +Y  LI   C L  +  AL + E+M    L P+  T NSIL    E       
Sbjct: 298 DATPNHVTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDA 357

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            ++   +    ++P++ T  ++I+   KI D  SA  + + + E  L      Y A++ G
Sbjct: 358 NKLLNEMSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHG 417

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQIT 182
           + + +++ GA  +L  M  A   P   T+S+L+    N  NEE ++K  ++    G  + 
Sbjct: 418 FCKIREMDGAKELLLSMLDAGFSPSYCTYSWLVDGYCNQQNEEAVLKLPDEFVRKGLCVD 477

Query: 183 KYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
           K ++ ALI  +    + + A+++  L  E      S + ++L  A    G+ + A  + +
Sbjct: 478 KSLYRALIRRFCKREQVDYAKKIFSLMQEKGTLGDSVIYTSLAYAYWKLGKANAASDLLD 537

Query: 242 EI 243
           E+
Sbjct: 538 EM 539



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/308 (21%), Positives = 121/308 (39%), Gaps = 50/308 (16%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+ V E M+     P       +L++  +    ++V ++Y  +    ++ N   +  +I 
Sbjct: 149 AIQVFEHMMVNGFRPHLHACTVLLNSLAKDRLTDMVWKVYKKMARIGVEANIHVYNVLIH 208

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              K  D + A +LL +++   + P    YN +++ Y +K     AL V   ME+  +KP
Sbjct: 209 ACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEREGIKP 268

Query: 150 DSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV- 205
           D  T++ LIH    E    + ++ +++++ A      Y    LI+ Y    + ++A ++ 
Sbjct: 269 DIVTYNSLIHGFCKEGRMREAMRLFKEIRDATPNHVTYT--TLIDGYCRLNDLDQALRLR 326

Query: 206 ---------------------------VLDAEIPVKSRSEVK--------SALVSALASH 230
                                      + DA   +   SE K        + L++A    
Sbjct: 327 EEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPDNVTCNTLINAYCKI 386

Query: 231 GRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL----NSEGELNRLIQLLEEVHDPDY--- 283
           G    A+ V   + EAG  L+     ALI         +G    L+ +L+    P Y   
Sbjct: 387 GDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIREMDGAKELLLSMLDAGFSPSYCTY 446

Query: 284 -WM-DGCC 289
            W+ DG C
Sbjct: 447 SWLVDGYC 454



 Score = 45.4 bits (106), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 76/375 (20%), Positives = 149/375 (39%), Gaps = 41/375 (10%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM------------ 123
           N K + ++  +MI +  K K   +A SLL+ +   + + T S+ +A++            
Sbjct: 73  NYKHSLQSSWTMIHILTKFKHLKTAQSLLEKIAYRDFLSTQSVLSALVRLHDDPDINSHV 132

Query: 124 -----AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLK 175
                  Y   K  Q A+ V + M     +P     + L+++ + +   + + K Y+++ 
Sbjct: 133 FSWLVIVYANTKMKQEAIQVFEHMMVNGFRPHLHACTVLLNSLAKDRLTDMVWKVYKKMA 192

Query: 176 SAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTS 234
             G +   +V+  LI+A    G+ EKA  ++ + E   V       + L+S     G   
Sbjct: 193 RIGVEANIHVYNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKKGMHY 252

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD--PDY-----WMDG 287
           +A+ V + ++  G   +     +LI     EG +   ++L +E+ D  P++      +DG
Sbjct: 253 EALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEIRDATPNHVTYTTLIDG 312

Query: 288 CCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDL 347
            CRL         L  A  L ++++ +     +          C+I      +      L
Sbjct: 313 YCRL-------NDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDAN-----KL 360

Query: 348 LQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFL 407
           L  + ++   P +  C + L+ A     D+K A  +      AGL  +  +Y  +   F 
Sbjct: 361 LNEMSEKKIEPDNVTC-NTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFC 419

Query: 408 ASGNRKSASKLLSKM 422
                  A +LL  M
Sbjct: 420 KIREMDGAKELLLSM 434


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 87/432 (20%), Positives = 176/432 (40%), Gaps = 24/432 (5%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELV--PSTETINSILHACEESYE 61
           +L   P   SY  L+   CD  K   A D++  M +G  V  P+    N+++    +  +
Sbjct: 188 ELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGD 247

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
            N    ++  +    + P+  T+ S++    K +  D A + L  +    ++P    YN 
Sbjct: 248 VNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNN 307

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAG 178
           ++ GY      + A+ V KEM + ++ PD  T S L+ +      I +    ++ +   G
Sbjct: 308 LIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKG 367

Query: 179 GQITKYVFMALINAYTTCG---EFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSD 235
                + +  ++N Y T G   +      ++L   I     +   + L+ A A+ G    
Sbjct: 368 QNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYT--FNVLIKAYANCGMLDK 425

Query: 236 AIIVYEEIKEAGCN---LEPRAVIALIEHLNS-EGELNRLIQLLEEVHDPDYWMDGCCRL 291
           A+I++ E+++ G     +  R VIA +  +   +  + +  Q++++   PD +   C  L
Sbjct: 426 AMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNC--L 483

Query: 292 ILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFI 351
           I        L  A +L+ ++ +     ++          C++      D Q   DL    
Sbjct: 484 IQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRV--MDAQNIFDLTV-- 539

Query: 352 KDELGLPPSRKCLDFLL-GACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASG 410
              +GL P       L+ G C+  + +++A  ++    +AG+  NV+ Y  +   +   G
Sbjct: 540 --NVGLHPDAVVYSMLMDGYCLVGK-MEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIG 596

Query: 411 NRKSASKLLSKM 422
                  L  +M
Sbjct: 597 RIDEGLSLFREM 608



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/284 (18%), Positives = 122/284 (42%), Gaps = 18/284 (6%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           +  +I   C L +V  A ++ +  V   L P     + ++       +     R++  + 
Sbjct: 515 FSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMV 574

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
              ++PN   + ++++   KI   D   SL  ++ +  + P+  +Y+ I+ G F+     
Sbjct: 575 SAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTV 634

Query: 134 GALMVLKEMEQANVKPDSQTFSYLI-----HNCSNEEDIIKYYEQLKSAGGQITKYVFMA 188
            A M   EM ++ +  D  T++ ++     + C +E   I  +++L++   +I       
Sbjct: 635 PAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEA--IFLFKELRAMNVKINIITLNT 692

Query: 189 LINAYTTCGEFEKARQVVLDAEIPVKSRSEVK------SALVSALASHGRTSDAIIVYEE 242
           +I+        E+A+   L A I   SRS +       S +++ L   G   +A  ++  
Sbjct: 693 MIDGMFQTRRVEEAKD--LFASI---SRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSS 747

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
           ++ AGC    R +  ++  L  + E+ R    L ++ + ++ ++
Sbjct: 748 MQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLE 791



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 35/175 (20%), Positives = 78/175 (44%), Gaps = 3/175 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P+   Y  L+   C + ++   L +  +M+Q  + PST   + I+    ++      +
Sbjct: 578 IEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAK 637

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
             +  +    +  +  T+  ++    K + FD A  L  +L+ MN+       N ++ G 
Sbjct: 638 MKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGM 697

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAG 178
           F+ + V+ A  +   + ++ + P+  T+S +I N   E   E+    +  +++AG
Sbjct: 698 FQTRRVEEAKDLFASISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAG 752


>gi|357160857|ref|XP_003578899.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Brachypodium distachyon]
          Length = 714

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 123/274 (44%), Gaps = 7/274 (2%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L    S+ +Y  LIT       V  A  ++ +M    +VP+  T N+++    ++    
Sbjct: 293 RLSKKASAFTYNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNAE 352

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             +  +  +    L P+  T+ S+I+   K  +   A  L  DLK   L PT   YN ++
Sbjct: 353 AAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNILI 412

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQ 180
            GY R  D++GA  + +EM + +  PD  T++ L++      N   +  +++++ S G +
Sbjct: 413 DGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVRNLAMVRIFFDEMLSKGLE 472

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIV 239
              + +   I+A  T G    A Q+  +  +  + S +   + L+  L   G   DA ++
Sbjct: 473 PDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYNVLIDGLCKTGSLKDAYVL 532

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQ 273
           + ++   G  L+      LI   ++  E  RLI+
Sbjct: 533 WMKMVTDGLRLDCVTYTCLI---HAHCERGRLIE 563



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/289 (20%), Positives = 118/289 (40%), Gaps = 10/289 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  LI   C L  +  A  + E+M + + +P   T   +++         +VR
Sbjct: 401 LGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVRNLAMVR 460

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
             +  +    L+P+   + + IS  + I    +A+ L +++    +      YN ++ G 
Sbjct: 461 IFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYNVLIDGL 520

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITK 183
            +   ++ A ++  +M    ++ D  T++ LIH       +I+    ++ + ++G   + 
Sbjct: 521 CKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKNIFDGMVASGLSPSV 580

Query: 184 YVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
             +   I+ Y   G    A    R+++   E  V+      + L+ AL   GRT  A   
Sbjct: 581 VTYTIFIHTYCRRGNLYLAYGWFRKML---EEGVEPNEVTYNVLMHALCRMGRTESAYQH 637

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC 288
           + E+ E G          LI+    EG     I+L  E+H      D C
Sbjct: 638 FHEMLERGLVPNKYTYTLLIDGSCKEGNWVHAIRLYCEMHQKGIHPDHC 686



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 83/404 (20%), Positives = 163/404 (40%), Gaps = 23/404 (5%)

Query: 31  LDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL 90
           L   ++M +  + P  +  N +L    ++  ++ +R +Y  +    ++P+  T+ +++  
Sbjct: 179 LSAFQEMARHGVAPFVKECNCVLRVLRDAARWDDMRAVYSDMLQLGVEPSIFTYNTLLDS 238

Query: 91  NVKIKDFDSAYSLLDDL--KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
             K    D A +LL D+  +    +P    YN ++ G  RK +++ A  ++  M  +  K
Sbjct: 239 FCKAGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELEKAAQLVDIMRLSK-K 297

Query: 149 PDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
             + T++ LI      + + K      ++++ G   T   +  LI+     G  E A QV
Sbjct: 298 ASAFTYNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEAA-QV 356

Query: 206 VLDAEIPVKSRSE---VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
             D E+  K         ++L++     G    A+ ++ ++K AG          LI+  
Sbjct: 357 KFD-EMRAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNILIDGY 415

Query: 263 NSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAM 322
              G+L    +L EE+ + D   D C   IL        S     L  ++  F  DEM  
Sbjct: 416 CRLGDLEGARRLKEEMTEEDCLPDVCTYTIL-----MNGSCMVRNLAMVRIFF--DEMLS 468

Query: 323 EYHFSEIFCQIATTDPPDVQIGLDLLQF-IKDEL---GLPPSRKCLDFLLGACVNARDLK 378
           +    + F    T    ++ IG     F +++E+   G+       + L+        LK
Sbjct: 469 KGLEPDCF-AYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYNVLIDGLCKTGSLK 527

Query: 379 RAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
            A+++W +    GL  + ++Y  +  A    G    A  +   M
Sbjct: 528 DAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKNIFDGM 571



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 68/164 (41%), Gaps = 2/164 (1%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  LI   C+  ++  A ++ + MV   L PS  T    +H         L    +  +
Sbjct: 547 TYTCLIHAHCERGRLIEAKNIFDGMVASGLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKM 606

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               ++PN  T+  ++    ++   +SAY    ++ E  L+P    Y  ++ G  ++ + 
Sbjct: 607 LEEGVEPNEVTYNVLMHALCRMGRTESAYQHFHEMLERGLVPNKYTYTLLIDGSCKEGNW 666

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE--DIIKYYEQL 174
             A+ +  EM Q  + PD  T + L          D ++Y E +
Sbjct: 667 VHAIRLYCEMHQKGIHPDHCTHNALFKGFGEGHMYDAVQYLENV 710


>gi|297844892|ref|XP_002890327.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336169|gb|EFH66586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 903

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 93/431 (21%), Positives = 167/431 (38%), Gaps = 22/431 (5%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  L+   C    V  AL +  +M Q E+VP+  T N +L        F+ V 
Sbjct: 397 LKPDHHTYNTLVDGYCRAGHVDEALKLCGRMCQKEVVPTVMTYNILLKGYSRIGAFHDVL 456

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++ M+    +  N  +  +++    K+ DFD A  L +++    L+      N +++G 
Sbjct: 457 SLWKMMLKRGVTANEISCSTLLEALFKLGDFDEAMKLWENVLARGLLTDTITLNVMISGL 516

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITK 183
            + + V  A  +L  +     KPD QT+  L H   N  N ++     + ++  G   T 
Sbjct: 517 CKMEKVNEAKEILDNVNIFRCKPDVQTYQALSHGYYNVGNLKEAFAVKDFMEKKGIFPTI 576

Query: 184 YVFMALINAYTTCGEFE-KARQVVLDAEIPVKSRS-----EVKSALVSALASHGRTSDAI 237
            ++  LI+     G F+ K    V D  I +++R          AL++   + G    A 
Sbjct: 577 EMYNTLIS-----GAFKYKHLNKVADLVIELRARGLTPTVATYGALITGWCNIGMIDKAY 631

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVR 297
               E+ E G  L       +   L    + +    LL+++ D D  + G   L      
Sbjct: 632 ATCFEMIEKGITLNVNICSKIANSLFRLDKFDEACLLLQKIVDFDLLLPGYQSL----KE 687

Query: 298 FKQLSSATDLLKQ-LKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELG 356
           F + S+ T L  Q + +  ++         + I   +A           D  +   D L 
Sbjct: 688 FLEPSATTCLKTQKIAESVENSTPKKLLVPNNIVYNVAIAGLCKAGKLTDAQKLFSDLLS 747

Query: 357 ---LPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRK 413
                P       L+  C    D+ +A  +  E    G+  N+++Y  + K     GN  
Sbjct: 748 SDRFIPDEYTYTILIHGCAIDGDINKAFNLRDEMALKGIIPNIVTYNALIKGLCKLGNVD 807

Query: 414 SASKLLSKMPK 424
            A +LL K+P+
Sbjct: 808 RAQRLLRKLPQ 818



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/171 (21%), Positives = 76/171 (44%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M  K  +T +  S   L+     L     A+ + E ++   L+  T T+N ++    +  
Sbjct: 461 MMLKRGVTANEISCSTLLEALFKLGDFDEAMKLWENVLARGLLTDTITLNVMISGLCKME 520

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           + N  + I   +     KP+ +T++++      + +   A+++ D +++  + PT  MYN
Sbjct: 521 KVNEAKEILDNVNIFRCKPDVQTYQALSHGYYNVGNLKEAFAVKDFMEKKGIFPTIEMYN 580

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY 171
            +++G F+ K +     ++ E+    + P   T+  LI    N   I K Y
Sbjct: 581 TLISGAFKYKHLNKVADLVIELRARGLTPTVATYGALITGWCNIGMIDKAY 631



 Score = 45.8 bits (107), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 123/307 (40%), Gaps = 25/307 (8%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVP-------STETINSILHACE 57
           + I   + +Y +  +Y C+L    VAL+    +V GELV        S    + IL    
Sbjct: 111 VHILSRARNYGQTKSYLCEL----VALNHSGFVVWGELVRVFKEFSFSPTVFDMILKVYA 166

Query: 58  ESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTAS 117
           E         ++  +  +   P+  +  S++S  VK  +   A  + D +    + P   
Sbjct: 167 EKGMVKNALHVFDNMGKYGRIPSLLSCNSLLSNLVKKGENFVALHVYDQMISFEVSPDVF 226

Query: 118 MYNAIMAGYFRKKDVQGALMVLKEMEQA-NVKPDSQTFSYLIHN---CSNEEDIIKYYEQ 173
             + ++  Y R   V  A+   KEM+ +  ++ +  T + LI+      + E + +    
Sbjct: 227 TCSIVVNAYCRCGKVDKAMAFAKEMDNSLGLELNVVTCNSLINGYAMIGDVEGMTRVLRL 286

Query: 174 LKSAGGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGR 232
           +   G       F +LI +Y   G  E+A QV  L  E  +     +   L+     +GR
Sbjct: 287 MSERGVSRNVVTFTSLIKSYCKKGLMEEAEQVFELVTEKKLVPDQHMHGVLIDGYCRNGR 346

Query: 233 TSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDY----- 283
             DA+ V++ + E G         +LI      G+L    Q+L  ++D    PD+     
Sbjct: 347 ICDAVRVHDYMIEMGVRTNTTICNSLINGYCKSGQLVEAEQILTRMNDWSLKPDHHTYNT 406

Query: 284 WMDGCCR 290
            +DG CR
Sbjct: 407 LVDGYCR 413



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 57/321 (17%), Positives = 126/321 (39%), Gaps = 45/321 (14%)

Query: 22  CDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNS 81
           CD ++VH      + M++  +  +T   NS+++   +S +     +I   +   +LKP+ 
Sbjct: 348 CDAVRVH------DYMIEMGVRTNTTICNSLINGYCKSGQLVEAEQILTRMNDWSLKPDH 401

Query: 82  ETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKE 141
            T+ +++    +    D A  L   + +  ++PT   YN ++ GY R       L + K 
Sbjct: 402 HTYNTLVDGYCRAGHVDEALKLCGRMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKM 461

Query: 142 MEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGE 198
           M +  V  +  + S L+       + ++ +K +E + + G          +I+      +
Sbjct: 462 MLKRGVTANEISCSTLLEALFKLGDFDEAMKLWENVLARGLLTDTITLNVMISGLCKMEK 521

Query: 199 FEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI 256
             +A++++ +  I  + + +V++  AL     + G   +A  V +        +E + + 
Sbjct: 522 VNEAKEILDNVNI-FRCKPDVQTYQALSHGYYNVGNLKEAFAVKDF-------MEKKGIF 573

Query: 257 ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFK 316
             IE  N+                          LI    ++K L+   DL+ +L+ +  
Sbjct: 574 PTIEMYNT--------------------------LISGAFKYKHLNKVADLVIELRARGL 607

Query: 317 DDEMAMEYHFSEIFCQIATTD 337
              +A        +C I   D
Sbjct: 608 TPTVATYGALITGWCNIGMID 628



 Score = 40.0 bits (92), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 50/279 (17%), Positives = 113/279 (40%), Gaps = 5/279 (1%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQG-ELVPSTETINSILHACEESYEFN 63
            E++P   +   ++   C   KV  A+   ++M     L  +  T NS+++      +  
Sbjct: 219 FEVSPDVFTCSIVVNAYCRCGKVDKAMAFAKEMDNSLGLELNVVTCNSLINGYAMIGDVE 278

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
            + R+  ++    +  N  TF S+I    K    + A  + + + E  L+P   M+  ++
Sbjct: 279 GMTRVLRLMSERGVSRNVVTFTSLIKSYCKKGLMEEAEQVFELVTEKKLVPDQHMHGVLI 338

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK 183
            GY R   +  A+ V   M +  V+ ++   + LI+       +++  + L        K
Sbjct: 339 DGYCRNGRICDAVRVHDYMIEMGVRTNTTICNSLINGYCKSGQLVEAEQILTRMNDWSLK 398

Query: 184 ---YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
              + +  L++ Y   G  ++A ++     +  V       + L+   +  G   D + +
Sbjct: 399 PDHHTYNTLVDGYCRAGHVDEALKLCGRMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSL 458

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           ++ + + G      +   L+E L   G+ +  ++L E V
Sbjct: 459 WKMMLKRGVTANEISCSTLLEALFKLGDFDEAMKLWENV 497


>gi|15233142|ref|NP_191058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210358|sp|Q9SV46.1|PP282_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g54980, mitochondrial; Flags: Precursor
 gi|4678295|emb|CAB41086.1| putative protein [Arabidopsis thaliana]
 gi|28393168|gb|AAO42016.1| unknown protein [Arabidopsis thaliana]
 gi|332645801|gb|AEE79322.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 851

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 92/434 (21%), Positives = 178/434 (41%), Gaps = 73/434 (16%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           +P+S ++  LI +     ++  AL+  ++M    L PS   +++I+    +  +     +
Sbjct: 371 SPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALK 430

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           ++       L  N     +++S   K    D A  LL  ++   + P    YN +M G+ 
Sbjct: 431 LFDESFETGL-ANVFVCNTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHC 489

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKY 184
           R+K++  A +V   + +  +KP++ T+S LI  C    +E++ ++    + S+  ++   
Sbjct: 490 RQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGV 549

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK----SALVSALASHGRTSDAIIVY 240
           V+  +IN     G+  KAR+++  A +  + R  V     ++++      G    A+  Y
Sbjct: 550 VYQTIINGLCKVGQTSKARELL--ANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAY 607

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE----------EVHDPDYW--MDGC 288
           EE+   G  + P  VI     +N   + NR+ Q LE          ++  P Y   +DG 
Sbjct: 608 EEM--CGNGISPN-VITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGF 664

Query: 289 CRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLL 348
           C+          + SA+ L                  FSE+                   
Sbjct: 665 CKR-------SNMESASAL------------------FSELL------------------ 681

Query: 349 QFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLA 408
                E GL PS+   + L+    N  ++  A  ++K+    GL  ++ +Y  +    L 
Sbjct: 682 -----EEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLK 736

Query: 409 SGNRKSASKLLSKM 422
            GN   AS+L ++M
Sbjct: 737 DGNLILASELYTEM 750



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/287 (20%), Positives = 129/287 (44%), Gaps = 9/287 (3%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGE-LVPSTETINSILHACEESYEFNLVRRIYPMI 72
           Y+ +I   C + +   A +++  M++ + L  S  + NSI+    +  E +     Y  +
Sbjct: 551 YQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEM 610

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
           C + + PN  T+ S+++   K    D A  + D++K   +      Y A++ G+ ++ ++
Sbjct: 611 CGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNM 670

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITKYVFMAL 189
           + A  +  E+ +  + P    ++ LI    N  N    +  Y+++   G +     +  L
Sbjct: 671 ESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTL 730

Query: 190 INAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC 248
           I+     G    A ++  + + + +     + + +V+ L+  G+    + ++EE+K+   
Sbjct: 731 IDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKN-- 788

Query: 249 NLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL 293
           N+ P  +I  A+I     EG L+   +L +E+ D     DG    IL
Sbjct: 789 NVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDIL 835



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 72/152 (47%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + PS   Y  LI+   +L  +  ALD+ ++M++  L     T  +++    +     L  
Sbjct: 685 LNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILAS 744

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +Y  +    L P+   +  +++   K   F     + +++K+ N+ P   +YNA++AG+
Sbjct: 745 ELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGH 804

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
           +R+ ++  A  +  EM    + PD  TF  L+
Sbjct: 805 YREGNLDEAFRLHDEMLDKGILPDGATFDILV 836



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/276 (20%), Positives = 128/276 (46%), Gaps = 17/276 (6%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNL-KPNSETFRSMI 88
           AL+V+ + ++    P +   +  + AC ++ +  +   +   +    L  P+ ET+ S+I
Sbjct: 252 ALEVLSRAIERGAEPDSLLYSLAVQACCKTLDLAMANSLLREMKEKKLCVPSQETYTSVI 311

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
             +VK  + D A  L D++    +        +++ G+ +  D+  AL++  +ME+    
Sbjct: 312 LASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLITGHCKNNDLVSALVLFDKMEKEGPS 371

Query: 149 PDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           P+S TFS LI         E  +++Y++++  G   + +    +I  +    + E+A ++
Sbjct: 372 PNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKL 431

Query: 206 VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI---ALIEHL 262
             ++     +   V + ++S L   G+T +A  +  +++  G  + P  V     ++ H 
Sbjct: 432 FDESFETGLANVFVCNTILSWLCKQGKTDEATELLSKMESRG--IGPNVVSYNNVMLGHC 489

Query: 263 NSEG-ELNRLI--QLLEEVHDPDYW-----MDGCCR 290
             +  +L R++   +LE+   P+ +     +DGC R
Sbjct: 490 RQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFR 525



 Score = 41.6 bits (96), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 76/415 (18%), Positives = 164/415 (39%), Gaps = 19/415 (4%)

Query: 17  LITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHN 76
           L  YS D    H A+D+V QM++ +++P    +N  L A  +       + +Y  +    
Sbjct: 170 LNAYSKDRQTDH-AVDIVNQMLELDVIPFFPYVNRTLSALVQRNSLTEAKELYSRMVAIG 228

Query: 77  LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGAL 136
           +  ++ T + ++  +++ +    A  +L    E    P + +Y+  +    +  D+  A 
Sbjct: 229 VDGDNVTTQLLMRASLREEKPAEALEVLSRAIERGAEPDSLLYSLAVQACCKTLDLAMAN 288

Query: 137 MVLKEMEQANV-KPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKYVFMALINA 192
            +L+EM++  +  P  +T++ +I       N +D I+  +++ S G  +      +LI  
Sbjct: 289 SLLREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLITG 348

Query: 193 YTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLE 251
           +    +   A  +    E    S + V  S L+     +G    A+  Y++++  G    
Sbjct: 349 HCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPS 408

Query: 252 PRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCV-RFKQLSSATDLLKQ 310
              V  +I+      +    ++L +E  +        C  IL  + +  +   AT+LL +
Sbjct: 409 VFHVHTIIQGWLKGQKHEEALKLFDESFETGLANVFVCNTILSWLCKQGKTDEATELLSK 468

Query: 311 LKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKD---ELGLPPSRKCLDFL 367
           ++ +     +    +     C+         Q  +DL + +     E GL P+      L
Sbjct: 469 MESRGIGPNVVSYNNVMLGHCR---------QKNMDLARIVFSNILEKGLKPNNYTYSIL 519

Query: 368 LGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           +  C    D + A  +     ++ +  N + Y  +       G    A +LL+ M
Sbjct: 520 IDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANM 574


>gi|414874000|tpg|DAA52557.1| TPA: hypothetical protein ZEAMMB73_743775 [Zea mays]
          Length = 630

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 118/257 (45%), Gaps = 19/257 (7%)

Query: 7   ITPSSASYKKLITYSCDL-------LKVHVALDVVEQMVQG-ELVPSTETINSILHACEE 58
           +TP+  S+  L+   C         L + VAL ++  ++    LVP   T ++++ A  +
Sbjct: 150 LTPTLLSFNLLLKCICSSMVPRNPGLYLAVALGILHDVIPAWNLVPDKFTYSTVVSALAD 209

Query: 59  SYEFN-LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTAS 117
           +      V  ++ M+    +  ++E F  ++   ++  D + A  L   ++      TA 
Sbjct: 210 AGCVEEAVALVHEMVVDGVV--SAEAFNPVLKAMLRAGDVNGAVKLFRFMQLKGCTLTAV 267

Query: 118 MYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQL 174
            YN ++ G     + + A+ +++ ME   + P   T+  ++     C   ED  K  +++
Sbjct: 268 TYNVLLHGLLLCGEARAAMNIMRRMENEGIVPGLMTYGAVVDGLVKCGRVEDAWKVAQEM 327

Query: 175 KSAGGQITKYVFMALINAYTTCGEFEKARQV---VLDAEIPVKSRSEVKSALVSALASHG 231
              G   +++VF A+I  +   GE ++A  V   ++ A   VK    + SA++   A  G
Sbjct: 328 GGQGLAPSEFVFSAVITGFCKSGEVDRALMVWETMVAAR--VKPNVVLYSAMIDGFARSG 385

Query: 232 RTSDAIIVYEEIKEAGC 248
           R ++A  ++EE+ +A C
Sbjct: 386 RMTEAEKLFEEMVDAKC 402



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/288 (21%), Positives = 128/288 (44%), Gaps = 25/288 (8%)

Query: 48  TINSILHA---CEES-YEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           T N +LH    C E+    N++RR+     +  + P   T+ +++   VK    + A+ +
Sbjct: 268 TYNVLLHGLLLCGEARAAMNIMRRME----NEGIVPGLMTYGAVVDGLVKCGRVEDAWKV 323

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163
             ++    L P+  +++A++ G+ +  +V  ALMV + M  A VKP+   +S +I   + 
Sbjct: 324 AQEMGGQGLAPSEFVFSAVITGFCKSGEVDRALMVWETMVAARVKPNVVLYSAMIDGFAR 383

Query: 164 EEDII---KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSR 216
              +    K +E++  A        + +++  Y       +A     +++    +P    
Sbjct: 384 SGRMTEAEKLFEEMVDAKCIPNIVTYSSMVRGYFHIANSSRALSTWEEMIKVGCVPTAIS 443

Query: 217 SEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276
             +   L+S L   GR  DA++V++ +   GC  +  A  ++++ L   G ++  ++L  
Sbjct: 444 YSI---LISGLCDVGRLKDAMMVWKNMIGRGCAPDTIAYTSMMKGLCMSGMVDGGLRLFN 500

Query: 277 EV-----HDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDE 319
           ++       PD        L+   +R   L  A DLL Q+ D+  D +
Sbjct: 501 DMLAKGDAKPDVISYNV--LLDALIRTNDLPRAMDLLNQMLDQMCDPD 546



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 69/154 (44%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + PS   +  +IT  C   +V  AL V E MV   + P+    ++++     S       
Sbjct: 332 LAPSEFVFSAVITGFCKSGEVDRALMVWETMVAARVKPNVVLYSAMIDGFARSGRMTEAE 391

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++  +      PN  T+ SM+     I +   A S  +++ ++  +PTA  Y+ +++G 
Sbjct: 392 KLFEEMVDAKCIPNIVTYSSMVRGYFHIANSSRALSTWEEMIKVGCVPTAISYSILISGL 451

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160
                ++ A+MV K M      PD+  ++ ++  
Sbjct: 452 CDVGRLKDAMMVWKNMIGRGCAPDTIAYTSMMKG 485



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/154 (20%), Positives = 66/154 (42%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P   +Y  ++       +V  A  V ++M    L PS    ++++    +S E +   
Sbjct: 297 IVPGLMTYGAVVDGLVKCGRVEDAWKVAQEMGGQGLAPSEFVFSAVITGFCKSGEVDRAL 356

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +    +KPN   + +MI    +      A  L +++ +   +P    Y++++ GY
Sbjct: 357 MVWETMVAARVKPNVVLYSAMIDGFARSGRMTEAEKLFEEMVDAKCIPNIVTYSSMVRGY 416

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160
           F   +   AL   +EM +    P + ++S LI  
Sbjct: 417 FHIANSSRALSTWEEMIKVGCVPTAISYSILISG 450


>gi|224136366|ref|XP_002326842.1| predicted protein [Populus trichocarpa]
 gi|222835157|gb|EEE73592.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+  +E M++  + P+    NSI+ A   +       + Y M+    L P+S T  S+I 
Sbjct: 343 AMKFLEDMLEKGITPTVVAFNSIIAAYSRAGLEEKAYKAYRMMVKFGLFPSSLTCSSLIM 402

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              K+     A  LL ++    L    + +  ++ GYFR  DV GA  +  EME   + P
Sbjct: 403 GLSKLWRLQEARDLLYEMIVEGLPINKAAFTLLLDGYFRMGDVAGAYSLWNEMEGRGIHP 462

Query: 150 DSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D+  FS  I+  S    + + Y+   Q+   G     +V+ +LI  +   G  ++A  ++
Sbjct: 463 DAVAFSAFINGLSIVGLVDEAYDVFLQMSKKGFMPNNFVYNSLIRGFCNSGRLQEA--LM 520

Query: 207 LDAEIPVKSRSE---VKSALVSALASHGRTSDAIIVYEEIKEAG 247
           L+ E+  K         + +++ L   GR   A  V+  +   G
Sbjct: 521 LEREMARKGLLPDIFTTNIIINGLCKEGRMKSASDVFRNMHHTG 564



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 113/282 (40%), Gaps = 48/282 (17%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVRR 67
           P + ++  +I   C    V V   ++  M + +  P     N +++A C     F+ +  
Sbjct: 147 PCNRNFNAVILGFCRKGHVKVGESLLCVMQKFKCQPDVYAYNILINAYCTRGQTFDALGW 206

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +  MI  +   P+  TF ++I+      +   A +L D +KE   +P    YN +M GY 
Sbjct: 207 MRFMI-DNGCTPSLVTFGTVINAFCNQGNMMEARNLFDGMKEAGHIPNVVCYNTLMNGYV 265

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEED------------------ 166
           + +D+  A M+ +EM+   V PD  TF+ L+   +    EED                  
Sbjct: 266 KARDIGQANMLYEEMKSKAVAPDCTTFNILVAGHYRYGREEDRDRLLRDLSQSGSLSISS 325

Query: 167 -----------------IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA----RQV 205
                             +K+ E +   G   T   F ++I AY+  G  EKA    R +
Sbjct: 326 LYNICVSGLCWAGWLDEAMKFLEDMLEKGITPTVVAFNSIIAAYSRAGLEEKAYKAYRMM 385

Query: 206 VLDAEIPVKSRSEVKSALVSALASHGRTSDAI-IVYEEIKEA 246
           V     P    S   S+L+  L+   R  +A  ++YE I E 
Sbjct: 386 VKFGLFP---SSLTCSSLIMGLSKLWRLQEARDLLYEMIVEG 424



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 73/158 (46%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           +K    P++  Y  LI   C+  ++  AL +  +M +  L+P   T N I++   +    
Sbjct: 491 SKKGFMPNNFVYNSLIRGFCNSGRLQEALMLEREMARKGLLPDIFTTNIIINGLCKEGRM 550

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
                ++  + H  L P+  T+ ++I    K  D  S   +++ +      P  + YN  
Sbjct: 551 KSASDVFRNMHHTGLIPDIVTYNTLIDGYCKAFDTVSTDEVVNKMYATGWDPDITTYNIR 610

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160
           + G    + +  A+M+L+E+  A V PD+ T++ +++ 
Sbjct: 611 LHGLCTGRKMSRAVMMLEELISAGVVPDTVTYNTVMNG 648



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 3/133 (2%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
            L+P+S     +  L ++I D  S + LL  +      P    +NA++ G+ RK  V+  
Sbjct: 109 GLRPSSSAITILFKLLLRIGDHGSVWKLLRGMIHQGPRPCNRNFNAVILGFCRKGHVKVG 168

Query: 136 LMVLKEMEQANVKPDSQTFSYLIHN-CSNEE--DIIKYYEQLKSAGGQITKYVFMALINA 192
             +L  M++   +PD   ++ LI+  C+  +  D + +   +   G   +   F  +INA
Sbjct: 169 ESLLCVMQKFKCQPDVYAYNILINAYCTRGQTFDALGWMRFMIDNGCTPSLVTFGTVINA 228

Query: 193 YTTCGEFEKARQV 205
           +   G   +AR +
Sbjct: 229 FCNQGNMMEARNL 241



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 54/279 (19%), Positives = 120/279 (43%), Gaps = 15/279 (5%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           TPS  ++  +I   C+   +  A ++ + M +   +P+    N++++   ++ +      
Sbjct: 216 TPSLVTFGTVINAFCNQGNMMEARNLFDGMKEAGHIPNVVCYNTLMNGYVKARDIGQANM 275

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +Y  +    + P+  TF  +++ + +    +    LL DL +   +  +S+YN  ++G  
Sbjct: 276 LYEEMKSKAVAPDCTTFNILVAGHYRYGREEDRDRLLRDLSQSGSLSISSLYNICVSGLC 335

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLKSAGGQITKY 184
               +  A+  L++M +  + P    F+ +I   S    EE   K Y  +   G   +  
Sbjct: 336 WAGWLDEAMKFLEDMLEKGITPTVVAFNSIIAAYSRAGLEEKAYKAYRMMVKFGLFPSSL 395

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSD---AIIVYE 241
              +LI   +     ++AR ++   E+ V+     K+A    L  + R  D   A  ++ 
Sbjct: 396 TCSSLIMGLSKLWRLQEARDLLY--EMIVEGLPINKAAFTLLLDGYFRMGDVAGAYSLWN 453

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           E++  G + +  A  A I  L+       ++ L++E +D
Sbjct: 454 EMEGRGIHPDAVAFSAFINGLS-------IVGLVDEAYD 485



 Score = 42.4 bits (98), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 41/192 (21%), Positives = 74/192 (38%), Gaps = 3/192 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P + ++   I     +  V  A DV  QM +   +P+    NS++     S       
Sbjct: 460 IHPDAVAFSAFINGLSIVGLVDEAYDVFLQMSKKGFMPNNFVYNSLIRGFCNSGRLQEAL 519

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +    L P+  T   +I+   K     SA  +  ++    L+P    YN ++ GY
Sbjct: 520 MLEREMARKGLLPDIFTTNIIINGLCKEGRMKSASDVFRNMHHTGLIPDIVTYNTLIDGY 579

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE--DIIKYYEQLKSAGGQITK 183
            +  D      V+ +M      PD  T++  +H  C+  +    +   E+L SAG     
Sbjct: 580 CKAFDTVSTDEVVNKMYATGWDPDITTYNIRLHGLCTGRKMSRAVMMLEELISAGVVPDT 639

Query: 184 YVFMALINAYTT 195
             +  ++N   T
Sbjct: 640 VTYNTVMNGVCT 651


>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/317 (20%), Positives = 135/317 (42%), Gaps = 6/317 (1%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
            KL + P+  ++  LI   C       AL ++ QM +    P   T N++L A  +  + 
Sbjct: 203 VKLGVQPNVNTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQL 262

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
             VR +   + +  L PN  T+  ++    K+K    A  +++ +    ++P    YN +
Sbjct: 263 TQVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTM 322

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGG 179
           + G   +  +  A+ +  +ME   + PD  T++ LI  C      +   K  E++K+ G 
Sbjct: 323 VRGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGV 382

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAII 238
           +        +I  + T G+ ++A  V++   E          + +++     G+ ++A  
Sbjct: 383 KENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYK 442

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCV 296
           + +E+   G  L+   +  L+  +  E +L+    L  +     Y +D      LI+   
Sbjct: 443 MMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYF 502

Query: 297 RFKQLSSATDLLKQLKD 313
           + +Q   A  L +++K+
Sbjct: 503 KDEQADRALKLWEEMKE 519



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/264 (21%), Positives = 121/264 (45%), Gaps = 36/264 (13%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILH------ACEESY 60
           I  +  +Y  +I   C   K   A+D + ++++  LVP   T N I+H      A E+++
Sbjct: 522 IVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAF 581

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDD-LKEMNLMPTASMY 119
           +F      +  +  H+LKP+  T   ++    +    +   +L +  + +   M T + Y
Sbjct: 582 QF------HNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPMDTVT-Y 634

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGG 179
           N I++ + +++ ++ A  ++ EME  N++PD  T++ ++   +                G
Sbjct: 635 NIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTK--------------AG 680

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAII 238
           +  +   +AL  A       EK +QV      P    S++  S  +S+L + G+  DA+ 
Sbjct: 681 RTEEAEKLALKFA-------EKGQQVKTQDTSPELGTSDMMYSEQISSLCTQGKYKDAMK 733

Query: 239 VYEEIKEAGCNLEPRAVIALIEHL 262
           ++++ ++ G +L     I L++ L
Sbjct: 734 LFQQAEQKGVSLNKYTYIKLMDGL 757



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 69/413 (16%), Positives = 163/413 (39%), Gaps = 33/413 (7%)

Query: 28  HVALDVVEQMVQGELVPSTETINSILHA---CEESYEFNLVRRIYPMICHHNLKPNSETF 84
           H+   +  +M +    P+  T N++L+A      S+     R ++       ++PN  TF
Sbjct: 155 HLGHQIFNKMKRLRFRPNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVKLGVQPNVNTF 214

Query: 85  RSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQ 144
             +I       + + A  L++ + E    P    YN ++    ++  +     +L +M+ 
Sbjct: 215 NILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKN 274

Query: 145 ANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEK 201
           + + P+  T++ L+H  C  +  ++  +  E +   G     + +  ++      G+ ++
Sbjct: 275 SGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDE 334

Query: 202 ARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALI 259
           A + + D     K   +V +   L+     H  +  A  + EE+K  G          +I
Sbjct: 335 AVR-LRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMI 393

Query: 260 EHLNSEGEL----NRLIQLLEEVHDPDYW-----MDGCCRLILHCVRFKQLSSATDLLKQ 310
           +   +EG++    N +++++E    PD +     ++G C+         +++ A  ++ +
Sbjct: 394 KWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKA-------GKMAEAYKMMDE 446

Query: 311 LKDK-FKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLG 369
           +  K  K D   +      +  +    D   + +      +I DE+           L+ 
Sbjct: 447 MGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGT-------LIM 499

Query: 370 ACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
                    RA  +W+E +  G+   +++Y  + +    SG    A   L+++
Sbjct: 500 GYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNEL 552



 Score = 46.2 bits (108), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 105/256 (41%), Gaps = 18/256 (7%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA------CEESY 60
            +P   +Y  +I   C   K+  A  ++++M +  L   T T+N++LH        +++Y
Sbjct: 417 FSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAY 476

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
              +  R    I       +  T+ ++I    K +  D A  L +++KE  ++ T   YN
Sbjct: 477 TLTMKARKRGYIL------DEVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYN 530

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE-QLKSAGG 179
            I+ G         A+  L E+ +  + PD  T + +IH    E  + K ++   K    
Sbjct: 531 TIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEH 590

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSR---SEVKSALVSALASHGRTSDA 236
            +   +F   I     C E    + + L      K +   +   + ++S+     R  DA
Sbjct: 591 SLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPMDTVTYNIIISSFCKERRLEDA 650

Query: 237 IIVYEEIKEAGCNLEP 252
             +  E++  G NLEP
Sbjct: 651 FDLMTEME--GKNLEP 664


>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
 gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
          Length = 382

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 112/258 (43%), Gaps = 14/258 (5%)

Query: 3   AKLEIT---PSSASYKKLITYSCDLLKVHVALDVVEQMVQ-GELVPSTETINSILHACEE 58
           A LE+    P   SY  LI   C L +V  A D+  +MV  G   P+  T N+++    +
Sbjct: 35  ASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCK 94

Query: 59  SYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM 118
               +  R +       +  P+  T+ ++++   ++   D A +    + E   +PT   
Sbjct: 95  QDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVS 154

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE--DIIKYYEQLK 175
           +NAI+ G  R + +  AL V  EM   +  P+  T+S +I   C +++  +  +  +++ 
Sbjct: 155 FNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMV 214

Query: 176 SAGGQITKYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHG 231
           S G +     +  L+  ++  G  + A    R++V    IP        + ++  L   G
Sbjct: 215 SEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIP---DVVTYTVVIDKLCKVG 271

Query: 232 RTSDAIIVYEEIKEAGCN 249
           R  DA  ++ E+    C+
Sbjct: 272 RVDDAHEIFRELVANKCS 289



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 15/165 (9%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMV----QGELVPSTETINSILHACEESYEFNL 64
           P+  +Y  +I   C   ++  A  ++++MV    + +LV  T  +     A        L
Sbjct: 185 PNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGL 244

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
           +RR+    C     P+  T+  +I    K+   D A+ +  +L      P    Y+A++ 
Sbjct: 245 LRRMVSQGC----IPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIG 300

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS----NEE 165
           GY R   V     V++EM     +P+  T++ +I   S    NEE
Sbjct: 301 GYCRASRVDEGGKVMREMA---CRPNVVTYNTMIWGLSMVDRNEE 342


>gi|298705285|emb|CBJ48975.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 674

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 82/397 (20%), Positives = 165/397 (41%), Gaps = 12/397 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P+  +Y  LI+          +++ +EQM Q  L P+    ++++ ACE S ++    
Sbjct: 141 IRPNVFTYGALISACAKRGNWEDSVNYLEQMRQSGLAPNAVIYSTVISACERSDQWQKAV 200

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           ++   +    + P + T+ ++IS   K   +  A SLLD++ +M   P    + + M   
Sbjct: 201 KLLRTMRRDGILPVTVTYNTVISACGKSGQWSLAVSLLDEMSDMGCPPGPVTFASAMLAC 260

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLKSAGGQITK 183
            R +     L ++ +M++  V  D   ++  IH           ++Y +++ S G     
Sbjct: 261 ERARQWHHVLRIMDQMQEDEVWVDKYAYTTAIHAAGQLGKWARCVRYLDEMDSNGVAKDV 320

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
                 I+A    G++ +A +++ D  +  +       ++L+  L   G+   AI + + 
Sbjct: 321 VTVSVAISACADKGQWAQAEKLLEDMLDDGLTPNVITYTSLMVVLRRGGQHERAIKILDL 380

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQ 300
           ++  G     R     I       E  R + LL+E+       +       I  C    Q
Sbjct: 381 MRSKGVMPNVRTYSVAIAACADAKEWRRALALLKEMEREGVSPNEISYNTAIRACGDAGQ 440

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS 360
           LS A DL+ +++ +     + + Y  +   CQ A     D ++ L+LL  ++ E  + P+
Sbjct: 441 LSEALDLMDEMESRGVKASV-VTYGTAVAACQRAA----DWKMALELLAAMRREQ-IEPN 494

Query: 361 RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVL 397
                 ++ AC  A    +A +   + E A   +N L
Sbjct: 495 EIVYGGIIKACCAAGQASKALVDADQIEEAIQLFNKL 531



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 71/353 (20%), Positives = 150/353 (42%), Gaps = 52/353 (14%)

Query: 114 PTASMYNAIMAGYFRKKDVQGALMVLKEM-EQANVKPDSQTFSYLIHNCS---NEEDIIK 169
           P    YN ++      K  + A  + +EM ++  ++P+  T+  LI  C+   N ED + 
Sbjct: 107 PNVVSYNNVITACANAKKQKRAEGIFREMTKERGIRPNVFTYGALISACAKRGNWEDSVN 166

Query: 170 YYEQLKSAGGQITKYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVS 225
           Y EQ++ +G      ++  +I+A     +++KA    R +  D  +PV   +   + ++S
Sbjct: 167 YLEQMRQSGLAPNAVIYSTVISACERSDQWQKAVKLLRTMRRDGILPV---TVTYNTVIS 223

Query: 226 ALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWM 285
           A    G+ S A+ + +E+ + GC   P    + +       + + ++++++++ + + W+
Sbjct: 224 ACGKSGQWSLAVSLLDEMSDMGCPPGPVTFASAMLACERARQWHHVLRIMDQMQEDEVWV 283

Query: 286 D-----------GCCRLILHCVRF----------KQLSSATDLLKQLKDKFK-------- 316
           D           G       CVR+          K + + +  +    DK +        
Sbjct: 284 DKYAYTTAIHAAGQLGKWARCVRYLDEMDSNGVAKDVVTVSVAISACADKGQWAQAEKLL 343

Query: 317 ----DDEMA---MEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLG 369
               DD +    + Y    +  +        ++I LDL++      G+ P+ +     + 
Sbjct: 344 EDMLDDGLTPNVITYTSLMVVLRRGGQHERAIKI-LDLMR----SKGVMPNVRTYSVAIA 398

Query: 370 ACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           AC +A++ +RA  + KE E  G+  N +SY    +A   +G    A  L+ +M
Sbjct: 399 ACADAKEWRRALALLKEMEREGVSPNEISYNTAIRACGDAGQLSEALDLMDEM 451



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 81/400 (20%), Positives = 167/400 (41%), Gaps = 35/400 (8%)

Query: 44  PSTETINSILHACEESYEFNLVRRIY-PMICHHNLKPNSETFRSMISLNVKIKDFDSAYS 102
           P+  + N+++ AC  + +      I+  M     ++PN  T+ ++IS   K  +++ + +
Sbjct: 107 PNVVSYNNVITACANAKKQKRAEGIFREMTKERGIRPNVFTYGALISACAKRGNWEDSVN 166

Query: 103 LLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS 162
            L+ +++  L P A +Y+ +++   R    Q A+ +L+ M +  + P + T++ +I  C 
Sbjct: 167 YLEQMRQSGLAPNAVIYSTVISACERSDQWQKAVKLLRTMRRDGILPVTVTYNTVISACG 226

Query: 163 NEED---IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV-----VLD--AEIP 212
                   +   +++   G       F    +A   C   E+ARQ      ++D   E  
Sbjct: 227 KSGQWSLAVSLLDEMSDMGCPPGPVTFA---SAMLAC---ERARQWHHVLRIMDQMQEDE 280

Query: 213 VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLI 272
           V       +  + A    G+ +  +   +E+   G   +   V   I     +G+  +  
Sbjct: 281 VWVDKYAYTTAIHAAGQLGKWARCVRYLDEMDSNGVAKDVVTVSVAISACADKGQWAQAE 340

Query: 273 QLLEEVHDPDYWMDGC-------CRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYH 325
           +LLE++ D     DG          L++   R  Q   A  +L  ++ K       M   
Sbjct: 341 KLLEDMLD-----DGLTPNVITYTSLMVVLRRGGQHERAIKILDLMRSKG-----VMPNV 390

Query: 326 FSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWK 385
            +      A  D  + +  L LL+ ++ E G+ P+    +  + AC +A  L  A  +  
Sbjct: 391 RTYSVAIAACADAKEWRRALALLKEMERE-GVSPNEISYNTAIRACGDAGQLSEALDLMD 449

Query: 386 EYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKD 425
           E E+ G+  +V++Y     A   + + K A +LL+ M ++
Sbjct: 450 EMESRGVKASVVTYGTAVAACQRAADWKMALELLAAMRRE 489



 Score = 46.2 bits (108), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 33/166 (19%), Positives = 70/166 (42%), Gaps = 11/166 (6%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           ++P+  SY   I    D  ++  ALD++++M    +  S  T  + + AC+ + ++ +  
Sbjct: 421 VSPNEISYNTAIRACGDAGQLSEALDLMDEMESRGVKASVVTYGTAVAACQRAADWKMAL 480

Query: 67  RIYPMICHHNLKPNSETFRSMISLN----------VKIKDFDSAYSLLDDLK-EMNLMPT 115
            +   +    ++PN   +  +I             V     + A  L + L+   N   T
Sbjct: 481 ELLAAMRREQIEPNEIVYGGIIKACCAAGQASKALVDADQIEEAIQLFNKLQARRNCSVT 540

Query: 116 ASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC 161
              Y  ++    R+   Q A+M+ +EME   + P  Q ++ ++  C
Sbjct: 541 IHSYTPLVDALTRELRWQEAIMLFQEMEDRKIMPTVQCYTSVVRAC 586


>gi|255547043|ref|XP_002514579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546183|gb|EEF47685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 840

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/237 (19%), Positives = 113/237 (47%), Gaps = 4/237 (1%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+ + +Q+ +  + P+  T NS+++    + + +  RR+   I  H L+PN+ T+ ++++
Sbjct: 545 AVKLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQARRLLDTIKLHGLEPNAVTYTTLMN 604

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  +  +  S   LL ++K   + PT   Y  ++ G  ++  +Q +  +L++M+   + P
Sbjct: 605 VYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCKQWKLQESCQLLEDMDAVGLTP 664

Query: 150 DSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D  +++ +I       D+    + Y+++     + T   +  LIN +   G+ + A  ++
Sbjct: 665 DQVSYNTIIQAFCKARDMRKAFQLYDKMLLHNLEPTSVTYNILINGFCVYGDLKDADNLL 724

Query: 207 LDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
           +  +   V       + ++ A  + G    A++ + ++ E G  +  R   A+I  L
Sbjct: 725 VSLQNRKVNLNKYAYTTIIKAHCAKGDVDKAVVYFRQMVEKGFEVSIRDYSAVIGRL 781



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 95/213 (44%), Gaps = 8/213 (3%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M AK  I P+  +Y  +I   C   K+  +  ++E M    L P   + N+I+ A  ++ 
Sbjct: 622 MKAK-AIGPTHITYTVVIKGLCKQWKLQESCQLLEDMDAVGLTPDQVSYNTIIQAFCKAR 680

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           +     ++Y  +  HNL+P S T+  +I+      D   A +LL  L+   +      Y 
Sbjct: 681 DMRKAFQLYDKMLLHNLEPTSVTYNILINGFCVYGDLKDADNLLVSLQNRKVNLNKYAYT 740

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSA 177
            I+  +  K DV  A++  ++M +   +   + +S +I        + +   ++  + S 
Sbjct: 741 TIIKAHCAKGDVDKAVVYFRQMVEKGFEVSIRDYSAVIGRLCKRCLVTEAKYFFCMMLSD 800

Query: 178 GGQITKYVFMALINAYTTCG----EFEKARQVV 206
           G    + +F  L+NA+  CG    EFE   +++
Sbjct: 801 GVCPDQDLFEVLLNAFHQCGHLNSEFELLAEMI 833



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 93/460 (20%), Positives = 169/460 (36%), Gaps = 118/460 (25%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           E  PS  S+  +++  C L  V VA      M++  L+P   + N ++H           
Sbjct: 276 EFQPSVVSFNTIMSRYCKLGFVDVAKSFFCMMLKHGLLPDAYSYNILIHG---------- 325

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
                 +C                          A  L +D++   L P    YN +  G
Sbjct: 326 ------LCIAG-------------------SMGEALDLKNDMENHGLEPDMVTYNILAKG 360

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI-HNC--SNEEDIIKYYEQLKSAGGQIT 182
           +     + GA  ++++M      P+  T++ LI  +C   N E+ +K Y+++ S G Q  
Sbjct: 361 FRLLGLINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKEMISHGFQ-- 418

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK---------SALVSALASHGRT 233
               +++I++    G   K+RQV  D    +    E           S L+  L   G  
Sbjct: 419 ----LSIISSTVLLGSLCKSRQV--DVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEV 472

Query: 234 SDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRL 291
             AI++YE  K     + P ++I  A++  L  +G++++     + +   +  +D    +
Sbjct: 473 QQAILLYE--KMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITSNLSLD----I 526

Query: 292 ILH------CVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGL 345
           IL+       ++      A  L KQL +K                               
Sbjct: 527 ILYNIMIDGYIKRGNTREAVKLYKQLGEK------------------------------- 555

Query: 346 DLLQFIKDELGLPPSRKCLDFLL-GACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYK 404
                     G+ P+    + L+ G C+N R L +A  +    +  GL  N ++Y  +  
Sbjct: 556 ----------GISPTIVTFNSLMYGFCIN-RKLSQARRLLDTIKLHGLEPNAVTYTTLMN 604

Query: 405 AFLASGNRKSASKLLSKM------PKDDPHVRFVIQACKQ 438
            +   GN +S  +LLS+M      P    +   +   CKQ
Sbjct: 605 VYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCKQ 644



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 85/429 (19%), Positives = 166/429 (38%), Gaps = 14/429 (3%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M  K  + P + SY  LI   C    +  ALD+   M    L P   T N +        
Sbjct: 306 MMLKHGLLPDAYSYNILIHGLCIAGSMGEALDLKNDMENHGLEPDMVTYNILAKGFRLLG 365

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
             N    I   +      PN  T+  +I  + +I + + A  L  ++       +     
Sbjct: 366 LINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKEMISHGFQLSIISST 425

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSA 177
            ++    + + V  A  +  EME   ++PD  T+S LIH    + ++   I  YE++ S 
Sbjct: 426 VLLGSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAILLYEKMCSN 485

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEV--KSALVSALASHGRTSD 235
                  +  A++      G+  +AR +  D  I      ++   + ++      G T +
Sbjct: 486 RIIPNSLIHGAILMGLCEKGKISQAR-MYFDYLITSNLSLDIILYNIMIDGYIKRGNTRE 544

Query: 236 AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHC 295
           A+ +Y+++ E G +       +L+       +L++  +LL+ +       +      L  
Sbjct: 545 AVKLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQARRLLDTIKLHGLEPNAVTYTTLMN 604

Query: 296 VRFKQ--LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKD 353
           V  ++  + S  +LL ++K K          H +             +Q    LL+ + D
Sbjct: 605 VYCEEGNMQSLLELLSEMKAKAIGPT-----HITYTVVIKGLCKQWKLQESCQLLEDM-D 658

Query: 354 ELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRK 413
            +GL P +   + ++ A   ARD+++A  ++ +     L    ++Y  +   F   G+ K
Sbjct: 659 AVGLTPDQVSYNTIIQAFCKARDMRKAFQLYDKMLLHNLEPTSVTYNILINGFCVYGDLK 718

Query: 414 SASKLLSKM 422
            A  LL  +
Sbjct: 719 DADNLLVSL 727


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 87/432 (20%), Positives = 176/432 (40%), Gaps = 24/432 (5%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELV--PSTETINSILHACEESYE 61
           +L   P   SY  L+   CD  K   A D++  M +G  V  P+    N+++    +  +
Sbjct: 175 ELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGD 234

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
            N    ++  +    + P+  T+ S++    K +  D A + L  +    ++P    YN 
Sbjct: 235 VNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNN 294

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAG 178
           ++ GY      + A+ V KEM + ++ PD  T S L+ +      I +    ++ +   G
Sbjct: 295 LIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKG 354

Query: 179 GQITKYVFMALINAYTTCG---EFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSD 235
                + +  ++N Y T G   +      ++L   I     +   + L+ A A+ G    
Sbjct: 355 QNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYT--FNVLIKAYANCGMLDK 412

Query: 236 AIIVYEEIKEAGCN---LEPRAVIALIEHLNS-EGELNRLIQLLEEVHDPDYWMDGCCRL 291
           A+I++ E+++ G     +  R VIA +  +   +  + +  Q++++   PD +   C  L
Sbjct: 413 AMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNC--L 470

Query: 292 ILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFI 351
           I        L  A +L+ ++ +     ++          C++      D Q   DL    
Sbjct: 471 IQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRV--MDAQNIFDLTV-- 526

Query: 352 KDELGLPPSRKCLDFLL-GACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASG 410
              +GL P       L+ G C+  + +++A  ++    +AG+  NV+ Y  +   +   G
Sbjct: 527 --NVGLHPDAVVYSMLMDGYCLVGK-MEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIG 583

Query: 411 NRKSASKLLSKM 422
                  L  +M
Sbjct: 584 RIDEGLSLFREM 595



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/291 (18%), Positives = 125/291 (42%), Gaps = 18/291 (6%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           +  +I   C L +V  A ++ +  V   L P     + ++       +     R++  + 
Sbjct: 502 FSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMV 561

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
              ++PN   + ++++   KI   D   SL  ++ +  + P+  +Y+ I+ G F+     
Sbjct: 562 SAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTV 621

Query: 134 GALMVLKEMEQANVKPDSQTFSYLI-----HNCSNEEDIIKYYEQLKSAGGQITKYVFMA 188
            A +   EM ++ +  D  T++ ++     + C +E   I  +++L++   +I       
Sbjct: 622 PAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEA--IFLFKELRAMNVKINIITLNT 679

Query: 189 LINAYTTCGEFEKARQVVLDAEIPVKSRSEVK------SALVSALASHGRTSDAIIVYEE 242
           +I+        E+A+   L A I   SRS +       S +++ L   G   +A  ++  
Sbjct: 680 MIDGMFQTRRVEEAKD--LFASI---SRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSS 734

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL 293
           ++ AGC    R +  ++  L  + E+ R    L ++ + ++ ++    ++L
Sbjct: 735 MQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTTMLL 785



 Score = 43.1 bits (100), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 39/180 (21%), Positives = 78/180 (43%), Gaps = 13/180 (7%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P+   Y  L+   C + ++   L +  +M+Q  + PST     IL++      F   R
Sbjct: 565 IEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPST-----ILYSIIIDGLFQAGR 619

Query: 67  RIYPMICHHNLKPNSE-----TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
            +   +  H +  +       T+  ++    K + FD A  L  +L+ MN+       N 
Sbjct: 620 TVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNT 679

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAG 178
           ++ G F+ + V+ A  +   + ++ + P   T+S +I N   E   E+    +  +++AG
Sbjct: 680 MIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAG 739


>gi|90657590|gb|ABD96889.1| hypothetical protein [Cleome spinosa]
          Length = 719

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/274 (19%), Positives = 117/274 (42%), Gaps = 4/274 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P    Y  +I   C++     A  +  +M+   + P+  T N++LH   +S +F     +
Sbjct: 331 PDRVMYTTMIHGLCEMGSFGEARKLWFEMMDKGMQPNAYTYNTMLHGSLKSGDFERACEL 390

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           Y  +C+      + T   +IS        D A+ +   + E  +   A  YN+++ G+ +
Sbjct: 391 YNEMCNKGYGTTTVTCNKIISELCSRGKSDEAFEVFKKMSETGIQADAITYNSLIRGFCK 450

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYV 185
           +  V   + +L E+   + +P    +  LI     + D     +    + S G     Y 
Sbjct: 451 EGKVDERMNLLNELVAQDPQPSVSLYELLIIKSCKDGDFEAAKRLLGDMSSKGLHPNAYT 510

Query: 186 FMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +  +++     G+FE  R++  +       + +   + ++S L S G++ +A  +++++ 
Sbjct: 511 YDTMLHGSLKSGDFEHVRELYNETCNKGYGTTTATCNKIISELCSRGKSDEASEMFKKMS 570

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           E G   +     +LI     EG++ + + LL E+
Sbjct: 571 ETGIKADAITYNSLIRGFCKEGKVGKSMNLLNEL 604



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 128/316 (40%), Gaps = 43/316 (13%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P SAS ++ +   C +  +  A++V  Q+ +  +  S    NSIL  C ++ +  L+   
Sbjct: 154 PDSASLEQYVKCLCGVGFIEEAIEVYFQLKEAGIRISIVACNSILSGCLKAGKTELLFEF 213

Query: 69  YPMICHHNLK--PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           Y  +         N+ET   +I            Y LL+   +  L P    YN ++AG+
Sbjct: 214 YQEMIKAGTASDANTETVGCLIQAFCDSGQVARGYELLNQFLKTGLDPGNPTYNKLIAGF 273

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEEDIIKY--YEQLKSAGGQITK 183
            + K+      VL  M   N  P   T+  +I+  C NEE +  Y  +  LK  G    +
Sbjct: 274 CQAKNYASMSEVLHTMIARNHLPTIYTYQEIINGLCKNEECLEAYRVFNDLKDRGYAPDR 333

Query: 184 YVFMALINAYTTCGEFEKARQV---VLDAEIPVKS-------RSEVKSA----------- 222
            ++  +I+     G F +AR++   ++D  +   +          +KS            
Sbjct: 334 VMYTTMIHGLCEMGSFGEARKLWFEMMDKGMQPNAYTYNTMLHGSLKSGDFERACELYNE 393

Query: 223 ---------------LVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
                          ++S L S G++ +A  V++++ E G   +     +LI     EG+
Sbjct: 394 MCNKGYGTTTVTCNKIISELCSRGKSDEAFEVFKKMSETGIQADAITYNSLIRGFCKEGK 453

Query: 268 LNRLIQLLEEV--HDP 281
           ++  + LL E+   DP
Sbjct: 454 VDERMNLLNELVAQDP 469



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 106/236 (44%), Gaps = 6/236 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINS-ILHACEESYEFNLV 65
           I   + +Y  LI   C   KV   ++++ ++V  +  PS       I+ +C++  +F   
Sbjct: 434 IQADAITYNSLIRGFCKEGKVDERMNLLNELVAQDPQPSVSLYELLIIKSCKDG-DFEAA 492

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           +R+   +    L PN+ T+ +M+  ++K  DF+    L ++        T +  N I++ 
Sbjct: 493 KRLLGDMSSKGLHPNAYTYDTMLHGSLKSGDFEHVRELYNETCNKGYGTTTATCNKIISE 552

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQIT 182
              +     A  + K+M +  +K D+ T++ LI     E  + K      +L + G Q +
Sbjct: 553 LCSRGKSDEASEMFKKMSETGIKADAITYNSLIRGFCKEGKVGKSMNLLNELVAQGLQPS 612

Query: 183 KYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAI 237
              + +LI      G+ E A+++  D     ++  + ++  L+S L   GR ++ +
Sbjct: 613 ASSYASLIIQLCQNGDAESAKRLWGDMVSKGIEPHANLREHLISGLCKQGRATEGM 668


>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 897

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 95/457 (20%), Positives = 181/457 (39%), Gaps = 48/457 (10%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+   Y  LI   C + ++  A  ++ +M++    P T T + ++    + Y+ +   
Sbjct: 381 VQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAF 440

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   + +  + PN+ T+  MI+   +  +   A +LL+++    L P A MY  ++ G+
Sbjct: 441 ELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGH 500

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITK 183
            ++  +  A   L+ M +ANV PD   ++ LI   S     E+  +YY Q++  G    +
Sbjct: 501 SKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDE 560

Query: 184 YVFMALINAYTTCGEFEKARQV------------------VLDAEIPVKSRSEVKSALVS 225
           + +  LI+ Y      EKA Q+                  +L+         +V S L S
Sbjct: 561 FTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQS 620

Query: 226 ALASHGRTSD------------------AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
            L S  +  +                  A +V  E+++ G   +     +LI  L    +
Sbjct: 621 MLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMAD 680

Query: 268 LNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYH 325
           + + + LL+E+          C   LI    R   +S A ++   +  K           
Sbjct: 681 MEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTA 740

Query: 326 FSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWK 385
             +  C+       D+    DL + + D  G+ P     + L   C +A DL++A  + +
Sbjct: 741 LIDGNCKNG-----DITDAFDLYKDMLDR-GIAPDAFVYNVLATGCSDAADLEQALFLTE 794

Query: 386 EYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           E  N G  +  L +  + + F   G  +   KLL  M
Sbjct: 795 EMFNRGYAHVSL-FSTLVRGFCKRGRLQETEKLLHVM 830



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/287 (20%), Positives = 127/287 (44%), Gaps = 10/287 (3%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  + P    Y  LI     + ++  A +   Q+ +  LVP   T + ++H   ++    
Sbjct: 518 KANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLE 577

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              ++   + +  LKPN++T+  ++    K  D +   S+L  +      P   +Y  ++
Sbjct: 578 KADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVI 637

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQ 180
               R ++++ A MVL E+E+  + PD   +S LI      ++ E  +   +++   G +
Sbjct: 638 RNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLE 697

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIP--VKSRSEVKSALVSALASHGRTSDAII 238
                + ALI+ +   G+  +AR  V D+ +   +       +AL+     +G  +DA  
Sbjct: 698 PGIVCYNALIDGFCRSGDISRARN-VFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFD 756

Query: 239 VYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDY 283
           +Y+++ + G  + P A +   L    +   +L + + L EE+ +  Y
Sbjct: 757 LYKDMLDRG--IAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGY 801



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 106/265 (40%), Gaps = 41/265 (15%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS 86
           V  A  VV  M    L P+    N +L     +    LV ++   +    + P+  T+ +
Sbjct: 191 VRTAAQVVLMMGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGFMEGAGIPPDVYTYST 250

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
            +  + K +DFD+A  + ++++  +       YN +++G  R   V+ A    +EM    
Sbjct: 251 FLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYG 310

Query: 147 VKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           + PD+ T+                                 AL+N     G  ++A+ ++
Sbjct: 311 LSPDAFTYG--------------------------------ALMNGLCKGGRLKEAKALL 338

Query: 207 LDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLN 263
            +     +K    V + LV      G+ ++A  +  E+  AG  ++P  ++   LI  L 
Sbjct: 339 DEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAG--VQPNKIMYDNLIRGLC 396

Query: 264 SEGELNRLIQLLEEV----HDPDYW 284
             G+L R  +LL E+    H PD +
Sbjct: 397 KIGQLGRASKLLNEMIKVGHRPDTF 421



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 91/464 (19%), Positives = 172/464 (37%), Gaps = 73/464 (15%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  +I+  C    V  A    E+MV   L P   T  ++++   +       + +   +
Sbjct: 282 TYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEM 341

Query: 73  CHHNLKPNSETFRS--------------------MISLNV---------------KIKDF 97
               LKPN   + +                    MIS  V               KI   
Sbjct: 342 SCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQL 401

Query: 98  DSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYL 157
             A  LL+++ ++   P    Y+ +M G+F+  D  GA  +L EM  + + P++ T+  +
Sbjct: 402 GRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIM 461

Query: 158 IHN-CSNEE--DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPV 213
           I+  C N E  +     E++ S G +   +++  LI  ++  G    A + + +  +  V
Sbjct: 462 INGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANV 521

Query: 214 KSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQ 273
                  ++L+  L++ GR  +A   Y ++++ G   +      LI        L +  Q
Sbjct: 522 LPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQ 581

Query: 274 LLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQI 333
           LL++              +L+        + TDLL+     FK ++   E   S +   +
Sbjct: 582 LLQQ--------------MLNSGLKPNADTYTDLLEGY---FKSND--HEKVSSILQSML 622

Query: 334 ATTDPPDVQI-GLDLLQFIKDE--------------LGLPPSRKCLDFLLGACVNARDLK 378
            + D PD  I G+ +    + E               GL P       L+       D++
Sbjct: 623 GSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADME 682

Query: 379 RAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           +A  +  E    GL   ++ Y  +   F  SG+   A  +   +
Sbjct: 683 KAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSI 726


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 125/298 (41%), Gaps = 13/298 (4%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +I P+   Y  LI   C   ++  A  +   M    ++P+  T N+++    +       
Sbjct: 223 KIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKA 282

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +Y  +    L PN  TF  +I    K  +  SA   L D+    ++P   +YN ++ G
Sbjct: 283 LELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDG 342

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQIT 182
           Y +  ++  AL +  E+E+  + PD  T+S LI   C  +  E+     +++K  G    
Sbjct: 343 YCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPN 402

Query: 183 KYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
              +  LI+ Y   G  EKA +V     E  ++      S L+      G+   A+ +Y 
Sbjct: 403 AVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYT 462

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYW-----MDGCCR 290
           E+   G   +  A  ALI+    +G      +L +E+ +    P+ +     +DG C+
Sbjct: 463 EMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCK 520



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 78/399 (19%), Positives = 159/399 (39%), Gaps = 27/399 (6%)

Query: 41  ELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSA 100
           +++P+ +  N +L    +   F+ + ++Y  +      PN  T+ ++I    +  DF  A
Sbjct: 153 DVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKA 212

Query: 101 YSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160
           + L D++ E  + PT  +Y  ++ G   +  +  A  + + M  + + P+  T++ ++  
Sbjct: 213 FRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDG 272

Query: 161 ---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSR 216
               ++ +  ++ Y+++   G       F  LI+      E   AR+ ++D A   V   
Sbjct: 273 YCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPN 332

Query: 217 SEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276
             V + L+      G  S+A+ ++ EI++     +      LI+ L     +     LL+
Sbjct: 333 IFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQ 392

Query: 277 EVHDPDY---------WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFS 327
           E+    +          +DG C+          +  A ++  Q+ +K  +  +       
Sbjct: 393 EMKKKGFLPNAVTYNTLIDGYCKE-------GNMEKAIEVCSQMTEKGIEPNIITFSTLI 445

Query: 328 EIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEY 387
           + +C+    +     +GL     IK   GL P       L+       + K A  + KE 
Sbjct: 446 DGYCKAGKMEAA---MGLYTEMVIK---GLLPDVVAYTALIDGHFKDGNTKEAFRLHKEM 499

Query: 388 ENAGLPYNVLSYLWMYKAFLASGNRKSASKL-LSKMPKD 425
           + AGL  NV +   +       G    A KL L+K   D
Sbjct: 500 QEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTD 538



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 2/156 (1%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEF 62
           K EI P   +Y  LI   C + ++  A  ++++M +   +P+  T N+++   C+E    
Sbjct: 361 KHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEG-NM 419

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
                +   +    ++PN  TF ++I    K    ++A  L  ++    L+P    Y A+
Sbjct: 420 EKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTAL 479

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
           + G+F+  + + A  + KEM++A + P+  T S LI
Sbjct: 480 IDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLI 515


>gi|255556057|ref|XP_002519063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541726|gb|EEF43274.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 386

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 116/252 (46%), Gaps = 29/252 (11%)

Query: 9   PSSASYKKLITYSCDLLKVHV-ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           P S  +  LI  +    K  + +L     M+  ++ PS  T  SI+ +C +     L + 
Sbjct: 73  PDSFLFNTLIKSTSKFHKFSIYSLFFYNCMLLSDISPSAYTFTSIVKSCADLSSLKLGKV 132

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           ++  +  +    +     ++++   K  D  +A  + D ++E +++     +N+I++GY 
Sbjct: 133 VHGHVLVNGFGLDVYVQAALVACYAKSGDLGNARKVFDKMRERSVVS----WNSIISGYE 188

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVF- 186
           +    + A+ + K+M +   +PDS TF  ++  C+    +        S G  + KY   
Sbjct: 189 QNGFGREAIRLFKKMREEGFEPDSATFVIVLSACAQLGAL--------SMGCWVHKYTIG 240

Query: 187 ----------MALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSD 235
                      +LIN YT CG   KAR+ V D+   +K ++ V  +A++S   ++G    
Sbjct: 241 HGLDLNVVLGTSLINMYTRCGTVTKARE-VFDS---MKEKNVVTWTAMISGYGTNGHGRQ 296

Query: 236 AIIVYEEIKEAG 247
           A+ +++E+K  G
Sbjct: 297 AVQLFDEMKRRG 308



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/134 (20%), Positives = 62/134 (46%), Gaps = 4/134 (2%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+ + ++M +    P + T   +L AC +    ++   ++     H L  N     S+I+
Sbjct: 196 AIRLFKKMREEGFEPDSATFVIVLSACAQLGALSMGCWVHKYTIGHGLDLNVVLGTSLIN 255

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  +      A  + D +KE N++     + A+++GY      + A+ +  EM++    P
Sbjct: 256 MYTRCGTVTKAREVFDSMKEKNVVT----WTAMISGYGTNGHGRQAVQLFDEMKRRGPCP 311

Query: 150 DSQTFSYLIHNCSN 163
           +S TF  ++  C++
Sbjct: 312 NSVTFVAVLSACAH 325


>gi|224066771|ref|XP_002302207.1| predicted protein [Populus trichocarpa]
 gi|222843933|gb|EEE81480.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 107/239 (44%), Gaps = 12/239 (5%)

Query: 11  SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYP 70
             S+  +I      ++   AL     M +  +  +  T +S L AC +  E  L R+I+ 
Sbjct: 123 GGSWNAMIRACLQCVRPEKALSYFGDMHKQGVYANEVTFSSALRACGDVLELCLSRQIHG 182

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
           +I  +    N     S++ +  K      +  + D+++     P    +N I+  Y    
Sbjct: 183 LIVKYGFCGNVIVGSSLVDVYGKCGAMSESRRIFDEIEN----PNNVTWNIIVRRYLEVG 238

Query: 131 DVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQIT----KYVF 186
           D   A+++  +M +A ++P S TFS  +  CS+    +K   Q+     +I     + V 
Sbjct: 239 DENEAVVMFFKMFRAKLRPLSYTFSNALVACSDMR-AVKEGMQIHGVATKINFEEEEVVL 297

Query: 187 MALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
            +LI+ Y  CGE E AR+V    ++P        +++VSA A  GR  +A  +++E+ E
Sbjct: 298 SSLIDMYVKCGEIESARRVF---DLPGSRDLISWTSMVSAYAMSGRMREARELFDEMPE 353



 Score = 44.7 bits (104), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 52/271 (19%), Positives = 109/271 (40%), Gaps = 40/271 (14%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
            P++ ++  ++    ++   + A+ +  +M + +L P + T ++ L AC +        +
Sbjct: 221 NPNNVTWNIIVRRYLEVGDENEAVVMFFKMFRAKLRPLSYTFSNALVACSDMRAVKEGMQ 280

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM--------- 118
           I+ +    N +       S+I + VK  + +SA  + D     +L+   SM         
Sbjct: 281 IHGVATKINFEEEEVVLSSLIDMYVKCGEIESARRVFDLPGSRDLISWTSMVSAYAMSGR 340

Query: 119 ------------------YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160
                             YNA++AGY R    + AL  +  M +     D  TF  +++ 
Sbjct: 341 MREARELFDEMPERNMVSYNALLAGYIRSLQWEEALDFVYLMCRTTENIDHITFQLMLNV 400

Query: 161 CSNEEDIIKYYEQLKSAGGQITKYVFM-------ALINAYTTCGEFEKARQVVLDAEIPV 213
           CS   D+    +  K   G I ++ ++       AL++ Y  CG    A   V   ++  
Sbjct: 401 CSGLSDV----DMGKQVHGFIYRHGWLSNTVIGNALLDMYCKCGNLRSAG--VWFHQMKQ 454

Query: 214 KSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
              S   + L+++ A    +  A+ ++ E++
Sbjct: 455 SRDSVSWNVLLTSYARRQMSEQAMSIFREMQ 485


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 122/279 (43%), Gaps = 7/279 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
            +PS  +Y  +I   C   K+  A  ++++MV   + P+  T N ++            +
Sbjct: 260 FSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAK 319

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++  +    L+PN  T+ S+I+        D A  L D +  M L P    YNA++ G+
Sbjct: 320 KVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGF 379

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITK 183
            +KK ++ A  +L ++ +  + P+  TF+ LI         +D       +   G     
Sbjct: 380 CKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNV 439

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             +  LI  +   G  ++AR++  + E   +K+     + LV AL   G T  A+ + +E
Sbjct: 440 STYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDE 499

Query: 243 ---IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
              +++ G          LI+   ++G+L    +LL E+
Sbjct: 500 MTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEM 538



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 120/280 (42%), Gaps = 10/280 (3%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNL 64
            I  +  ++  +I   C + K   A DVVE M      PS  T N+I+   C+    F  
Sbjct: 224 RIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKA 283

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
              +  M+    + PN  TF  +I    + ++  +A  + ++++   L P    YN+++ 
Sbjct: 284 DALLKEMVAKR-IHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLIN 342

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQI--- 181
           G      +  AL +  +M    +KP+  T++ LI+    ++ + +  E L   G +    
Sbjct: 343 GLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAP 402

Query: 182 TKYVFMALINAYTTCGEFEKA---RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAII 238
               F  LI+AY   G  + A   R ++LD    V       + L+      G   +A  
Sbjct: 403 NVITFNTLIDAYGKAGRMDDAFLLRSMMLDT--GVCPNVSTYNCLIVGFCREGNVKEARK 460

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           + +E++  G   +      L++ L  +GE  + ++LL+E+
Sbjct: 461 LAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEM 500



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 3/161 (1%)

Query: 45  STETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLL 104
           S  + N +L +  +     +V  +Y  +    +  N  TF  +I+   K+  F  A  ++
Sbjct: 193 SALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVV 252

Query: 105 DDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE 164
           +D+K     P+   YN I+ GY +   +  A  +LKEM    + P+  TF+ LI     +
Sbjct: 253 EDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRD 312

Query: 165 EDII---KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
           E++    K +E+++  G Q     + +LIN   + G+ ++A
Sbjct: 313 ENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEA 353



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/249 (21%), Positives = 107/249 (42%), Gaps = 7/249 (2%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
            I P+  ++  LI   C    V  A  V E+M +  L P+  T NS+++    + + +  
Sbjct: 294 RIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEA 353

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +   +    LKPN  T+ ++I+   K K    A  +LDD+ +  L P    +N ++  
Sbjct: 354 LGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDA 413

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQIT 182
           Y +   +  A ++   M    V P+  T++ LI     E ++    K  ++++  G +  
Sbjct: 414 YGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKAD 473

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK----SALVSALASHGRTSDAII 238
              +  L++A    GE  KA +++ +  +  K          + L+    + G+  +A  
Sbjct: 474 LVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANR 533

Query: 239 VYEEIKEAG 247
           +  E+ E G
Sbjct: 534 LLNEMLEKG 542


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/278 (20%), Positives = 122/278 (43%), Gaps = 12/278 (4%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  LI   C   K+ VAL  + +M +  +  +    +S++    +  +    + +
Sbjct: 388 PNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSL 447

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +  + LKPN   + S+IS   K  +  +A+ L  ++    + P    + A+++G   
Sbjct: 448 FDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCH 507

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKYV 185
              +  A  +  EM + NV P+  T++ LI     E + ++ +E   ++   G     Y 
Sbjct: 508 ANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYT 567

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK---------SALVSALASHGRTSDA 236
           +  LI+   + G   +AR+ + D +   +  +E++         +AL++ L   G    A
Sbjct: 568 YRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKA 627

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQL 274
            ++  E+  +            +++L SEG + + IQL
Sbjct: 628 ELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQL 665



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 112/260 (43%), Gaps = 20/260 (7%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYE 61
            ++ I  +   Y  LI+  C L K+  A  + ++M+   L P+     S++   C+E  E
Sbjct: 417 TEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEG-E 475

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
            +   R+Y  +    + PN+ TF ++IS          A  L  ++ E N++P    YN 
Sbjct: 476 LHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNV 535

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE---------EDIIKYY 171
           ++ G+ ++ +   A  +L EM +  + PD+ T+  LI   CS            D+    
Sbjct: 536 LIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQ 595

Query: 172 EQLKSAGGQITKYV-FMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSA 226
           ++L    G +   V + ALIN     G  +KA    R+++    +P        +  +  
Sbjct: 596 QKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLP---NQNTYACFLDY 652

Query: 227 LASHGRTSDAIIVYEEIKEA 246
           L S G    AI +++ + E 
Sbjct: 653 LTSEGNIEKAIQLHDVLLEG 672



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/277 (19%), Positives = 114/277 (41%), Gaps = 4/277 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
             PS A+   L+        +  A D+V ++ +  + PS    N+++++  +  + +   
Sbjct: 316 FVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAE 375

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  + H  L PN  T+  +I    K    D A   L  + E+ +  T   Y+++++G+
Sbjct: 376 SLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGH 435

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITK 183
            +   ++ A  +  EM    +KP+   ++ LI     E ++    + Y ++   G     
Sbjct: 436 CKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNT 495

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           Y F ALI+         +A ++  +  E  V       + L+      G T  A  + +E
Sbjct: 496 YTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDE 555

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279
           + E G   +      LI  L S G ++   + + ++ 
Sbjct: 556 MVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQ 592



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/286 (20%), Positives = 126/286 (44%), Gaps = 17/286 (5%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           I+P++ ++  LI+  C   ++  A  +  +MV+  ++P+  T N ++   C+E       
Sbjct: 491 ISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAF 550

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLK----EMN----LMPTAS 117
             +  M+    L P++ T+R +IS          A   ++DL+    ++N     +P   
Sbjct: 551 ELLDEMV-EKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVV 609

Query: 118 MYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE--QLK 175
            Y A++ G  +   +  A ++ +EM  +N  P+  T++  +   ++E +I K  +   + 
Sbjct: 610 TYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVL 669

Query: 176 SAGGQITKYVFMALINAYTTCGEFEKARQVV---LDAEIPVKSRSEVKSALVSALASHGR 232
             G       +  LI  +   G  ++A +V+   +D+ I     S   S ++      G 
Sbjct: 670 LEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCIS--YSTIIYEYCRRGD 727

Query: 233 TSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
             +AI ++E +   G N +  A   LI      GEL +  +L +++
Sbjct: 728 LKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDM 773



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 47/262 (17%), Positives = 110/262 (41%), Gaps = 18/262 (6%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
            L VV  M+   ++P   T++ +L+      +F +   ++  I    L+P+   + +++ 
Sbjct: 164 GLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVR 223

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              ++KDF  A  ++  ++      + + YN  + G  + + V  A+ +   +    ++ 
Sbjct: 224 SLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRA 283

Query: 150 DSQTFSYLIHN-CSNEEDIIKYYEQLKSAGGQITKYVFMA-------LINAYTTCGEFEK 201
           D  T+  L+   C  EE     +E  +    ++ ++ F+        L++     G    
Sbjct: 284 DVGTYCTLVLGLCKVEE-----FEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGS 338

Query: 202 ARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--AL 258
           A  +V    +  V     V +AL++++   G+  +A  ++  +   G  L P  V    L
Sbjct: 339 AFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKG--LFPNDVTYSIL 396

Query: 259 IEHLNSEGELNRLIQLLEEVHD 280
           I+     G+L+  +  L ++ +
Sbjct: 397 IDSFCKRGKLDVALHFLGKMTE 418


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 112/258 (43%), Gaps = 14/258 (5%)

Query: 3   AKLEIT---PSSASYKKLITYSCDLLKVHVALDVVEQMVQ-GELVPSTETINSILHACEE 58
           A LE+    P   SY  LI   C L +V  A D+  +MV  G   P+  T N+++    +
Sbjct: 85  ASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCK 144

Query: 59  SYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM 118
               +  R +       +  P+  T+ ++++   ++   D A +    + E   +PT   
Sbjct: 145 QDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVS 204

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE--DIIKYYEQLK 175
           +NAI+ G  R + +  AL V  EM   +  P+  T+S +I   C +++  +  +  +++ 
Sbjct: 205 FNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMV 264

Query: 176 SAGGQITKYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHG 231
           S G +     +  L+  ++  G  + A    R++V    IP        + ++  L   G
Sbjct: 265 SEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIP---DVVTYTVVIDKLCKVG 321

Query: 232 RTSDAIIVYEEIKEAGCN 249
           R  DA  ++ E+    C+
Sbjct: 322 RVDDAHEIFRELVANKCS 339



 Score = 46.2 bits (108), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 73/362 (20%), Positives = 146/362 (40%), Gaps = 30/362 (8%)

Query: 77  LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGAL 136
           L  +S T+  +I       D D+A+SLL ++    +       + I+ G  R   V  AL
Sbjct: 21  LPASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGRVAQAL 80

Query: 137 MVL-KEMEQANVKPDSQTFSYLIHN-C--SNEEDIIKYYEQLKSAGG-QITKYVFMALIN 191
                 +E A+ +PD  +++ LI+  C     +     + ++ +AGG +   + + AL++
Sbjct: 81  EHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVD 140

Query: 192 AYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNL 250
                   + AR V+ +A     +   V  + L++AL   GR  +A+  + ++ E G   
Sbjct: 141 GLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVP 200

Query: 251 EPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY---------WMDGCCRLILHCVRFKQL 301
              +  A+I  L     L   +++  E+ D D+          +DG C       +  QL
Sbjct: 201 TLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLC-------KSDQL 253

Query: 302 SSATDLL-KQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS 360
             A  LL + + +  + D +A    ++ +    +     D  +GL L + +    G  P 
Sbjct: 254 DEAQQLLDRMVSEGCRPDLVA----YTPLVLGFSAAGRLDSALGL-LRRMVSQ--GCIPD 306

Query: 361 RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420
                 ++        +  AH I++E        NV++Y  +   +  +       K++ 
Sbjct: 307 VVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMR 366

Query: 421 KM 422
           +M
Sbjct: 367 EM 368



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 15/165 (9%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMV----QGELVPSTETINSILHACEESYEFNL 64
           P+  +Y  +I   C   ++  A  ++++MV    + +LV  T  +     A        L
Sbjct: 235 PNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGL 294

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
           +RR+    C     P+  T+  +I    K+   D A+ +  +L      P    Y+A++ 
Sbjct: 295 LRRMVSQGC----IPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIG 350

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS----NEE 165
           GY R   V     V++EM     +P+  T++ +I   S    NEE
Sbjct: 351 GYCRASRVDEGGKVMREMA---CRPNVVTYNTMIWGLSMVDRNEE 392


>gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 878

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 105/212 (49%), Gaps = 6/212 (2%)

Query: 48  TINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL 107
           T N++L A  +  + +L   I   +   N+ PN  T+ +MI    K+   D A ++ +++
Sbjct: 333 TYNTLLDAVCKGGQMDLAFEIMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEM 392

Query: 108 KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE--- 164
           K + +      YN +++ Y +    + AL V KEME A ++ D  T++ L+     +   
Sbjct: 393 KFLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRY 452

Query: 165 EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSAL 223
           +++ + +E++K          +  LI+ Y+  G +++A +V  +  +  +K+   + SAL
Sbjct: 453 DEVRRVFEEMKRGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSAL 512

Query: 224 VSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255
           + AL  +G    ++ + +E+ + G  + P  V
Sbjct: 513 IDALCKNGLVESSVTLLDEMTKEG--IRPNVV 542



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/252 (20%), Positives = 115/252 (45%), Gaps = 4/252 (1%)

Query: 31  LDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL 90
           +++ + M+   + P   T NS+L  C     +   RR++  +    +  +  T+ +++  
Sbjct: 281 VEIFDGMLSNGVQPDRITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQDIFTYNTLLDA 340

Query: 91  NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD 150
             K    D A+ ++ ++   N++P    Y+ ++ GY +   +  AL +  EM+   V  D
Sbjct: 341 VCKGGQMDLAFEIMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKFLGVGLD 400

Query: 151 SQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVL 207
             +++ L+         E  +   +++++AG +     + AL+  Y     +++ R+V  
Sbjct: 401 RVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFE 460

Query: 208 DAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
           + +    S + +  S L+   +  G   +A+ V+ E K+AG   +     ALI+ L   G
Sbjct: 461 EMKRGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDALCKNG 520

Query: 267 ELNRLIQLLEEV 278
            +   + LL+E+
Sbjct: 521 LVESSVTLLDEM 532



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 102/222 (45%), Gaps = 5/222 (2%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEES-YEFNLVRRIYPMICHHNLKPNSETFRSMI 88
           A+ V + M    L+P+  T N+++ AC +   EF  V  I+  +  + ++P+  TF S++
Sbjct: 244 AIKVFDSMKSNGLMPNLVTYNAVIDACGKGGVEFKKVVEIFDGMLSNGVQPDRITFNSLL 303

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
           ++  +   +++A  L   + +  +      YN ++    +   +  A  ++ EM   N+ 
Sbjct: 304 AVCSRGGLWEAARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQMDLAFEIMSEMPTKNIL 363

Query: 149 PDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           P+  T+S +I         +D +  + ++K  G  + +  +  L++ Y   G FE+A  V
Sbjct: 364 PNVVTYSTMIDGYAKVGRLDDALNMFNEMKFLGVGLDRVSYNTLLSVYAKLGRFEQALDV 423

Query: 206 VLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA 246
             + E   ++      +AL++      R  +   V+EE+K  
Sbjct: 424 CKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRG 465



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 74/154 (48%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           L +     SY  L++    L +   ALDV ++M    +     T N++L    + Y ++ 
Sbjct: 395 LGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDE 454

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
           VRR++  +    + PN  T+ ++I +  K   +  A  +  + K+  L     +Y+A++ 
Sbjct: 455 VRRVFEEMKRGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALID 514

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
              +   V+ ++ +L EM +  ++P+  T++ +I
Sbjct: 515 ALCKNGLVESSVTLLDEMTKEGIRPNVVTYNSII 548



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 77/360 (21%), Positives = 147/360 (40%), Gaps = 58/360 (16%)

Query: 83  TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM-----AGYFRKKDVQGALM 137
            F ++IS   +    + A  + D +K   LMP    YNA++      G   KK V+    
Sbjct: 227 AFSALISAYGRSGYCNEAIKVFDSMKSNGLMPNLVTYNAVIDACGKGGVEFKKVVE---- 282

Query: 138 VLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYT 194
           +   M    V+PD  TF+ L+  CS     E   + +  +   G     + +  L++A  
Sbjct: 283 IFDGMLSNGVQPDRITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQDIFTYNTLLDAVC 342

Query: 195 TCGEFEKARQVVLDAEIPVKS---RSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLE 251
             G+ + A +++  +E+P K+        S ++   A  GR  DA+ ++ E+K  G  L+
Sbjct: 343 KGGQMDLAFEIM--SEMPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKFLGVGLD 400

Query: 252 PRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQL 311
             +   L   L+   +L R  Q L+            C+ + +    K + +   LL   
Sbjct: 401 RVSYNTL---LSVYAKLGRFEQALD-----------VCKEMENAGIRKDVVTYNALLAGY 446

Query: 312 KDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGAC 371
             +++ DE+        +F ++        ++  +LL +                L+   
Sbjct: 447 GKQYRYDEV------RRVFEEMKRG-----RVSPNLLTY--------------STLIDVY 481

Query: 372 VNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDD--PHV 429
                 K A  +++E++ AGL  +V+ Y  +  A   +G  +S+  LL +M K+   P+V
Sbjct: 482 SKGGLYKEAMEVFREFKQAGLKADVVLYSALIDALCKNGLVESSVTLLDEMTKEGIRPNV 541


>gi|326515584|dbj|BAK07038.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 594

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/306 (22%), Positives = 145/306 (47%), Gaps = 38/306 (12%)

Query: 29  VALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI----YPMICHHNLKPNSETF 84
           + L +   M++G ++P+  T+ S++  C    + +L +++    Y + C  NL   + T 
Sbjct: 80  LGLSLFLDMLEGGVMPNEFTLTSVMSLCGARLDMSLGKQVQAFCYKVGCEANLPVKNST- 138

Query: 85  RSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR-----KKDVQG----- 134
              + L ++  + D A  L +++   +++     +NA+++GY +     K D+       
Sbjct: 139 ---MYLYLRKGETDEAMRLFEEMDSSSIIT----WNAMISGYAQIMDSAKDDLHARSRGF 191

Query: 135 -ALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKS----AGGQITKYVFMAL 189
            AL + +++ ++ +KPD  TFS ++  CS     ++  EQ+ +     G      V  AL
Sbjct: 192 QALKLFRDLVRSELKPDLFTFSSILSVCSAMM-ALEQGEQIHANTIKTGCLSDVVVNSAL 250

Query: 190 INAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
           +N Y  CG  E A +  +  E+P ++     ++++S  + HGR+ DAI ++E++  +G  
Sbjct: 251 VNMYNKCGSIECATKAFV--EMPTRT-PVTWTSMISGYSQHGRSQDAIQLFEDMVLSGAR 307

Query: 250 LEPRAVIALIEHLNSEG---ELNRLIQLLEEVHDPDYWMD--GCCRLILHCVRFKQLSSA 304
                 ++L+   +  G   E  R   ++   +  +  +D  GC  ++   VR  +L  A
Sbjct: 308 PNEITFVSLLSACSYAGLVEEAERYFDMMRNEYHIEPLVDHYGC--MVDMFVRLGRLDDA 365

Query: 305 TDLLKQ 310
              +K+
Sbjct: 366 FSFIKR 371


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 112/241 (46%), Gaps = 12/241 (4%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   ++  LI   C  LK+  AL +VE+M    + P   T NS+L+   ++ +   V   
Sbjct: 453 PDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNET 512

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +     +PN+ T+  +I    KI   + A  ++  + +  L+P A  +N ++ G+ R
Sbjct: 513 FEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCR 572

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYV 185
             D+ GA ++ +++++      + TF+ LI   S++ ++    K + ++ S G +   Y 
Sbjct: 573 NGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYT 632

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
           +  L++        ++A   +  AE+       +    V ++A+ GR  + + +   + E
Sbjct: 633 YRILVDGLCKAANVDRAYAHL--AEM-------ISKGFVPSMATFGRMLNLLAMNHRVSE 683

Query: 246 A 246
           A
Sbjct: 684 A 684



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 82/421 (19%), Positives = 159/421 (37%), Gaps = 45/421 (10%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  L+   C   KV  A   + +M+    +P   T N+I+    +S       
Sbjct: 276 VAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEAT 335

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +          P+  T+ S+I+      D + A  L ++ +  +L P   +YN+++ G 
Sbjct: 336 ELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGL 395

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA---GGQITK 183
            R+  +  AL V+ EM +    PD  T++ +I+      +I      +  A   G     
Sbjct: 396 CRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDV 455

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           + F  LI+ Y    + + A Q+V       +       +++++ L   G+  +    +EE
Sbjct: 456 FTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEE 515

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLS 302
           +   GC   P A+   I                               LI +  +  QL 
Sbjct: 516 MILKGC--RPNAITYNI-------------------------------LIENFCKINQLE 542

Query: 303 SATDLLKQL-KDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSR 361
            A+ ++ ++ +D    D ++        FC+    D      G  LL    DE G   + 
Sbjct: 543 EASGVIVRMCQDGLVPDAVSFN-TLIHGFCRNGDLD------GAYLLFQKLDEKGYSATA 595

Query: 362 KCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSK 421
              + L+GA  +  +++ A  I+ E  + G   ++ +Y  +      + N   A   L++
Sbjct: 596 DTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAE 655

Query: 422 M 422
           M
Sbjct: 656 M 656



 Score = 38.9 bits (89), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 50/261 (19%), Positives = 94/261 (36%), Gaps = 15/261 (5%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           ++  A+D  E+M      P+    N+I+ A   +   +   ++Y  +    + P++ T  
Sbjct: 86  RLRAAVDAFERMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPDARTH- 144

Query: 86  SMISLNVKIKDF------DSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVL 139
                 V++K F        A  LL  L E       + Y  ++ G +       A  + 
Sbjct: 145 -----TVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLF 199

Query: 140 KEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA---GGQITKYVFMALINAYTTC 196
            EM   +V PD  TF+ ++H    + D+++    L      G    K+     I      
Sbjct: 200 DEMLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCED 259

Query: 197 GEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI 256
           G  E+A  +V      V       + L+  L    +  +A      +   GC  +     
Sbjct: 260 GRLEEAVALVERMGAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYN 319

Query: 257 ALIEHLNSEGELNRLIQLLEE 277
            +I+     G L    +LL++
Sbjct: 320 TIIDGYCKSGMLQEATELLKD 340


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 123/310 (39%), Gaps = 36/310 (11%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P    + +LI   C   KV  A +  +QM +    P+    N +LH    S +      +
Sbjct: 148 PDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTL 207

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +  H+  P+  T+ +++    K +  +    L + ++    +P    ++ ++ G  R
Sbjct: 208 FAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCR 267

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMA 188
             +++ AL V   M +A  KP+  T++ LI      E +I+  E                
Sbjct: 268 TGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQAREL--------------- 312

Query: 189 LINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC 248
                     FEK  Q  +  +      +   ++L++     G   +A  +Y E+   G 
Sbjct: 313 ----------FEKMTQACIPPD------AVAYNSLIAGYCKRGSMDEAEKLYREM-SGGA 355

Query: 249 NLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCR--LILHCVRFKQLSSA 304
            L+P  V    LI+     G+L R  +L+ E+       D C    LI    R  +L  A
Sbjct: 356 GLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEA 415

Query: 305 TDLLKQLKDK 314
            ++ KQ+++K
Sbjct: 416 LEVYKQMREK 425



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/272 (20%), Positives = 113/272 (41%), Gaps = 36/272 (13%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           +P   +Y  L+   C   +V     + E M     VP+  T ++++H    + E      
Sbjct: 217 SPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALE 276

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           ++  +     KPN  T+ ++IS   + +    A  L + + +  + P A  YN+++AGY 
Sbjct: 277 VFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYC 336

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFM 187
           ++  +  A  + +EM                                  AG Q T   F 
Sbjct: 337 KRGSMDEAEKLYREMSGG-------------------------------AGLQPTIVTFN 365

Query: 188 ALINAYTTCGEFEKARQVVLDAEIPVK---SRSEVKSALVSALASHGRTSDAIIVYEEIK 244
            LI+ +   G+  +A ++V  AE+  K   + S     L++ L+   +  +A+ VY++++
Sbjct: 366 TLIDGFCKLGKLGRANELV--AEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMR 423

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276
           E    L+P + ++ +  L   G +++   + E
Sbjct: 424 EKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFE 455



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 73/369 (19%), Positives = 151/369 (40%), Gaps = 44/369 (11%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
           N+  N  T+ S+I   VK    + +Y +L+++      P    +N +M G+ R  +++ A
Sbjct: 5   NIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKA 64

Query: 136 LMVLKEMEQANVKPDSQTFSYLIHNCS---NEEDIIKYYEQLKSAGGQITKYVFMALINA 192
             V + M ++  KPD+ ++  LIH  +     ++ +K   ++   G   +   + +L+ A
Sbjct: 65  REVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRA 124

Query: 193 YTTCGEFEKARQV-----VLDAEIPVKSRSE--VKSALVSALASHGRTSDAIIVYEEIKE 245
                   KAR+V     + D  I      +  +   L+  L   G+  DA   ++++ +
Sbjct: 125 ------LAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPK 178

Query: 246 AGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDY-----WMDGCC---RLIL 293
            GC         L+  L S G+L +   L  E+      PD       +D  C   R+  
Sbjct: 179 HGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEE 238

Query: 294 HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKD 353
            C  F+ + +A  +   +              FS +   +  T   +++  L++   +  
Sbjct: 239 GCKLFEAMRAAGYVPNVIT-------------FSTLIHGLCRTG--ELEKALEVFGSML- 282

Query: 354 ELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRK 413
           E G  P++     L+     A  + +A  ++++   A +P + ++Y  +   +   G+  
Sbjct: 283 EAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMD 342

Query: 414 SASKLLSKM 422
            A KL  +M
Sbjct: 343 EAEKLYREM 351


>gi|413915825|gb|AFW21589.1| hypothetical protein ZEAMMB73_481763 [Zea mays]
 gi|413923991|gb|AFW63923.1| hypothetical protein ZEAMMB73_685382 [Zea mays]
          Length = 953

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 87/447 (19%), Positives = 185/447 (41%), Gaps = 49/447 (10%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + PS  ++  LI   C + ++  A  + E MV+  ++P   T+++++        F+   
Sbjct: 255 VEPSVVTHTTLIGEYCKMKRIEEAFTLYEGMVRSGVLPDVVTLSALVDGLCRDGRFSEAY 314

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL------------------- 107
            ++  +    + PN  T+ + I    K++  + +  LL ++                   
Sbjct: 315 ALFREMDKIGVAPNHVTYCTFIDSLAKVQRVNESLGLLGEMVSRGVAMDLVMYTTVMDRL 374

Query: 108 -KEM---------------NLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151
            KE                N+ P    Y  ++  + R  ++ GA  +L +ME+ +V P+ 
Sbjct: 375 GKEGKIEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVSPNV 434

Query: 152 QTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
            TFS +++       I K   Y  ++K +G       +  LI+ +  C   E A  V  D
Sbjct: 435 VTFSSILNGLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALDVYRD 494

Query: 209 A-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
                V++ + +  +LV+ L  +G   +A  +++++ E G  L+      L++ L   G 
Sbjct: 495 MLHEGVEANNFIVDSLVNGLRKNGNIEEAEALFKDMGERGLLLDHVNYATLMDGLFKTGN 554

Query: 268 LNRLIQLLEEVHDPDYWMDGCC-RLILHCV-RFKQLSSATDLLKQLKDKFKDDEMAMEYH 325
           +   +++ +E+ + +   D     + ++C+ R  + S A   LK++++   + + A    
Sbjct: 555 MPAALKVGQELMERNLSPDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQATYNT 614

Query: 326 FSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWK 385
                C+   T        L LL  +K    + P+      L+   + A  +++A  +  
Sbjct: 615 MISAQCREGNTSK-----ALKLLNEMKWS-SIKPNLITYTTLVVGLLEAGVVEKAKYLLN 668

Query: 386 EYENAGLPYNVLSYLWMYKAFLASGNR 412
           E  +AG     L+Y  + +A   SG+R
Sbjct: 669 EMASAGFTPTPLTYRRVLQA--CSGSR 693



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 104/241 (43%), Gaps = 12/241 (4%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINS-ILHACEES 59
           +HA + +      Y  L+   C       A  V+++M+   + P T T N+ IL  C+ S
Sbjct: 710 LHADITV------YNTLVHVLCCHGMTRKATIVLDEMLGRGIAPDTITFNALILGHCKSS 763

Query: 60  YEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMY 119
           +  N     Y  + H  L PN  TF +++           A +++ ++K+M L P    Y
Sbjct: 764 HLDNAFA-TYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVICEMKKMGLEPNNLTY 822

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKS 176
           + ++ GY +K +   AL +  EM      P + T++ LI + +         + + ++K 
Sbjct: 823 DILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLISDFAKAGMMNQAKELFSEMKR 882

Query: 177 AGGQITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSD 235
            G   T   +  L+N ++      + R ++ D  E+  K      S++  A +  G T +
Sbjct: 883 RGVLHTSSTYDILLNGWSKLRNGTEVRILLKDMKELGFKPSKGTISSMSRAFSKPGMTWE 942

Query: 236 A 236
           A
Sbjct: 943 A 943



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 80/182 (43%), Gaps = 4/182 (2%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL V +++++  L P     N  ++      +F+  +     + +  L+P+  T+ +MIS
Sbjct: 558 ALKVGQELMERNLSPDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQATYNTMIS 617

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              +  +   A  LL+++K  ++ P    Y  ++ G      V+ A  +L EM  A   P
Sbjct: 618 AQCREGNTSKALKLLNEMKWSSIKPNLITYTTLVVGLLEAGVVEKAKYLLNEMASAGFTP 677

Query: 150 DSQTFSYLIHNCSNEED---IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
              T+  ++  CS       I++ +E +  AG      V+  L++     G   KA  +V
Sbjct: 678 TPLTYRRVLQACSGSRSPYVILEVHELMMGAGLHADITVYNTLVHVLCCHGMTRKA-TIV 736

Query: 207 LD 208
           LD
Sbjct: 737 LD 738



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/203 (20%), Positives = 90/203 (44%), Gaps = 3/203 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P + ++  LI   C    +  A     QM+   L P+  T N++L   E +       
Sbjct: 745 IAPDTITFNALILGHCKSSHLDNAFATYAQMLHQGLSPNIATFNTLLGGLESAGRIGEAD 804

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +    L+PN+ T+  +++   K  +   A  L  ++     +P AS YN++++ +
Sbjct: 805 TVICEMKKMGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLISDF 864

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS---NEEDIIKYYEQLKSAGGQITK 183
            +   +  A  +  EM++  V   S T+  L++  S   N  ++    + +K  G + +K
Sbjct: 865 AKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGTEVRILLKDMKELGFKPSK 924

Query: 184 YVFMALINAYTTCGEFEKARQVV 206
               ++  A++  G   +AR+++
Sbjct: 925 GTISSMSRAFSKPGMTWEARRLL 947



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/211 (19%), Positives = 95/211 (45%), Gaps = 13/211 (6%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA--CEESY 60
           A    TP+  +Y++++         +V L+V E M+   L       N+++H   C    
Sbjct: 671 ASAGFTPTPLTYRRVLQACSGSRSPYVILEVHELMMGAGLHADITVYNTLVHVLCCH--- 727

Query: 61  EFNLVRR---IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTAS 117
              + R+   +   +    + P++ TF ++I  + K    D+A++    +    L P  +
Sbjct: 728 --GMTRKATIVLDEMLGRGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQGLSPNIA 785

Query: 118 MYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQL 174
            +N ++ G      +  A  V+ EM++  ++P++ T+  L+      SN+ + ++ Y ++
Sbjct: 786 TFNTLLGGLESAGRIGEADTVICEMKKMGLEPNNLTYDILVTGYAKKSNKVEALRLYCEM 845

Query: 175 KSAGGQITKYVFMALINAYTTCGEFEKARQV 205
            S G       + +LI+ +   G   +A+++
Sbjct: 846 VSKGFIPKASTYNSLISDFAKAGMMNQAKEL 876



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 48/238 (20%), Positives = 100/238 (42%), Gaps = 8/238 (3%)

Query: 84  FRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME 143
           + ++I    K++D  +A ++++ +    L      YN ++AG+F   D   A  V + M+
Sbjct: 192 WNALIDGYCKVQDMAAALAVVERMTTQGLSLDVVGYNTLVAGFFYSGDADAAWEVAERMK 251

Query: 144 QANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFE 200
              V+P   T + LI   C  +  E+    YE +  +G         AL++     G F 
Sbjct: 252 ADGVEPSVVTHTTLIGEYCKMKRIEEAFTLYEGMVRSGVLPDVVTLSALVDGLCRDGRFS 311

Query: 201 KARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALI 259
           +A  +  + + I V          + +LA   R ++++ +  E+   G  ++      ++
Sbjct: 312 EAYALFREMDKIGVAPNHVTYCTFIDSLAKVQRVNESLGLLGEMVSRGVAMDLVMYTTVM 371

Query: 260 EHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL---HCVRFKQLSSATDLLKQLKDK 314
           + L  EG++     +L      +   +     +L   HC R   +  A  +L Q+++K
Sbjct: 372 DRLGKEGKIEEAKDVLRHALSDNITPNCVTYTVLVDAHC-RAGNIDGAEQMLLQMEEK 428



 Score = 45.4 bits (106), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 80/420 (19%), Positives = 155/420 (36%), Gaps = 43/420 (10%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P+  +Y  LI           ALDV   M+   +  +   ++S+++   ++       
Sbjct: 465 IAPNVVTYGTLIDGFFKCQGQEAALDVYRDMLHEGVEANNFIVDSLVNGLRKNGNIEEAE 524

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +    L  +   + +++    K  +  +A  +  +L E NL P A +YN  +   
Sbjct: 525 ALFKDMGERGLLLDHVNYATLMDGLFKTGNMPAALKVGQELMERNLSPDAVVYNVFINCL 584

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH-NC--SNEEDIIKYYEQLKSAGGQITK 183
            R      A   LKEM    ++PD  T++ +I   C   N    +K   ++K +  +   
Sbjct: 585 CRLGKFSEAKSFLKEMRNTGLEPDQATYNTMISAQCREGNTSKALKLLNEMKWSSIKPNL 644

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAII-VYEE 242
             +  L+      G  EKA+ ++ +      + + +    V    S  R+   I+ V+E 
Sbjct: 645 ITYTTLVVGLLEAGVVEKAKYLLNEMASAGFTPTPLTYRRVLQACSGSRSPYVILEVHEL 704

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLS 302
           +  AG + +      L+  L   G   +   +L+E+       D         + F  L 
Sbjct: 705 MMGAGLHADITVYNTLVHVLCCHGMTRKATIVLDEMLGRGIAPD--------TITFNAL- 755

Query: 303 SATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRK 362
               +L   K    D+  A    ++++  Q                       GL P+  
Sbjct: 756 ----ILGHCKSSHLDNAFAT---YAQMLHQ-----------------------GLSPNIA 785

Query: 363 CLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
             + LLG   +A  +  A  +  E +  GL  N L+Y  +   +    N+  A +L  +M
Sbjct: 786 TFNTLLGGLESAGRIGEADTVICEMKKMGLEPNNLTYDILVTGYAKKSNKVEALRLYCEM 845


>gi|297793055|ref|XP_002864412.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297310247|gb|EFH40671.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1245

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 93/430 (21%), Positives = 179/430 (41%), Gaps = 27/430 (6%)

Query: 6    EITPSSASYKKLITYSCDLLKVHVA-LDVVEQMVQGELVPS----TETINSILHACEESY 60
             I P S +Y  LI+  C   K  +A L   E   +G LVP+    T  ++ +  A +   
Sbjct: 643  SILPDSFTYTSLISGLCRKGKTVIAILFAKEAEARGNLVPNKVMYTCFVDGMFKAGQWKA 702

Query: 61   EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
             F   +++  +     L  +  T  +MI    ++   +  + LL ++   N  P  + YN
Sbjct: 703  GFYFRQQMDKL----GLTRDVVTTNAMIDGYSRMGKIEKTHDLLFEMGNQNQGPNLTTYN 758

Query: 121  AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQT-FSYLIHNC-SNEEDI-IKYYEQLKSA 177
             ++ GY ++K V  + M+ + M  + + PD  T +S ++  C SN  +I +K  +     
Sbjct: 759  ILLHGYSKRKHVSTSFMLYRSMILSGILPDKLTCYSIILGICESNMLEIGLKILKAFICR 818

Query: 178  GGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDA 236
            G ++ ++ F  LI+     GE   A  +V +   + +        A+VS L  + R  ++
Sbjct: 819  GVEVDRHTFNMLISKCCANGEINWAFDMVNVMTSLGISLDKNTCDAIVSVLNRNHRFQES 878

Query: 237  IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEE-----VHDPDYWMDGCCRL 291
             +V  E+ + G + E R  I L+  L   G++     + EE     +  P+       R 
Sbjct: 879  RMVLHEMSKQGISPESRKYIGLLNGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRA 938

Query: 292  ILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFI 351
            +  C +  +   A+ LL+ +        +A       +FC+       +V   L+ L+ +
Sbjct: 939  LAKCGKADE---ASLLLRSMLKMKLVPTIASFTTLMHLFCK-----NGNVTEALE-LRVV 989

Query: 352  KDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGN 411
                GL       + L+       D+  A  +++E +  G   NV +Y  +    L+ G 
Sbjct: 990  MSNCGLKLDLVSYNVLITGLCAKGDMAIAFELFEEMKRDGFLANVTTYKALVGGILSQGT 1049

Query: 412  RKSASKLLSK 421
              S + ++ K
Sbjct: 1050 EFSGTDIILK 1059



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 96/222 (43%), Gaps = 4/222 (1%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           +L++   M      PS  T N+IL +  +S E   V      +    + P+  TF  +I+
Sbjct: 142 SLEIFRLMGLYGFNPSVYTCNAILGSIVKSCEDVSVWSFLKEMLKRKICPDVATFNILIN 201

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +      F  +  L+  +++    PT   YN ++  Y +K   + A+ +L  M    V  
Sbjct: 202 VLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMNLKGVNA 261

Query: 150 DSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQI---TKYVFMALINAYTTCGEFEKARQVV 206
           D  T++ LIH+        K Y  L+    ++    +  +  L+N ++  G+   ARQ++
Sbjct: 262 DVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRMIHPNEVTYNTLLNGFSNEGKVLIARQLL 321

Query: 207 LDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAG 247
            +      S + V  +AL+    S G   +A+ ++  ++  G
Sbjct: 322 NEMLTFGLSPNHVTFNALIDGHISEGNFKEALKMFHMMEAKG 363



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 92/438 (21%), Positives = 169/438 (38%), Gaps = 39/438 (8%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P+  +Y  L+    +  KV +A  ++ +M+   L P+  T N+++        F    
Sbjct: 294 IHPNEVTYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPNHVTFNALIDGHISEGNFKEAL 353

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++ M+    L     ++  ++    K  +FD A      +K   +      Y  ++ G 
Sbjct: 354 KMFHMMEAKGLIGTEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGL 413

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-C------SNEEDIIKYYEQLKSAGG 179
            +   +  A+++L EM +  + PD  T+S LI+  C      + +E + + Y    S  G
Sbjct: 414 CKNGFLDEAVVMLNEMSKDGIDPDIVTYSALINGFCRVGRLKTAKEIVCRIYRVGLSPNG 473

Query: 180 QITKYVFMALINAYTTC--GEFEKARQV----VLDAEIPVKSRSEVKSALVSALASHGRT 233
            I    +  LI  Y  C  G  ++  ++    +L+   P      V   LV++L   G+ 
Sbjct: 474 II----YSTLI--YNCCRMGCLKETIRIYEAMILEGNTPDHFTFNV---LVTSLCKAGKV 524

Query: 234 SDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEV----HDPDYWMDG 287
           ++A      +   G  + P AV    LI    S GE  +   + +E+    H P ++  G
Sbjct: 525 AEAEEFMRCMTSDG--ILPNAVSFDCLINGYGSSGEGLKAFSVFDEMTKVGHHPTFFTYG 582

Query: 288 CCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDL 347
              L+    +   L +A   LK L++     +  M        C+    D      G   
Sbjct: 583 --SLLKGLCKGGHLIAAEKFLKSLQNVPAAVDTVMCNTLITAMCKSGNLDKAVSLFG--- 637

Query: 348 LQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAG-LPYNVLSYLWMYKAF 406
            + ++  + LP S      + G C   + +  A L  KE E  G L  N + Y       
Sbjct: 638 -EMVQRSI-LPDSFTYTSLISGLCRKGKTVI-AILFAKEAEARGNLVPNKVMYTCFVDGM 694

Query: 407 LASGNRKSASKLLSKMPK 424
             +G  K+      +M K
Sbjct: 695 FKAGQWKAGFYFRQQMDK 712



 Score = 38.5 bits (88), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 6/159 (3%)

Query: 3    AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA---CEES 59
            +K  I+P S  Y  L+   C +  +  A  V E+M+  ++ P     ++++ A   C ++
Sbjct: 886  SKQGISPESRKYIGLLNGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKA 945

Query: 60   YEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMY 119
             E +L+ R    +    L P   +F +++ L  K  +   A  L   +    L      Y
Sbjct: 946  DEASLLLR---SMLKMKLVPTIASFTTLMHLFCKNGNVTEALELRVVMSNCGLKLDLVSY 1002

Query: 120  NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            N ++ G   K D+  A  + +EM++     +  T+  L+
Sbjct: 1003 NVLITGLCAKGDMAIAFELFEEMKRDGFLANVTTYKALV 1041


>gi|297725471|ref|NP_001175099.1| Os07g0203900 [Oryza sativa Japonica Group]
 gi|255677594|dbj|BAH93827.1| Os07g0203900 [Oryza sativa Japonica Group]
          Length = 721

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/245 (20%), Positives = 123/245 (50%), Gaps = 14/245 (5%)

Query: 29  VALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
           +A+    +M +  + P+  +++S+L AC    +      ++ +   H    +     +++
Sbjct: 98  LAVAAFARMARAGVSPTASSVSSVLVACVRLEDAAAGATLHSVGLMHGFCASVVVGTALV 157

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
            +  K     +A  +  +++E N+    + + A++AG+   +    A+++++EME++ V 
Sbjct: 158 DMYAKCHHLGAAQQVFREMEEKNV----ATFTALVAGFVLSRRPHDAMLLVREMERSGVA 213

Query: 149 PDSQTFSYLIHNCSNEEDIIKYYEQLKSA----GGQITKYVFMALINAYTTCGEFEKARQ 204
           P+  T+S L+ + ++ ED I + +Q+  A    G +  ++V  AL+  Y+ CG  E   +
Sbjct: 214 PNLMTYSSLLSSFASPED-IDHGKQVHCAVLKKGLEHDQFVLSALVTMYSKCGILENFVK 272

Query: 205 VVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
           V    ++ V  + +V  ++++S L+  GR  +A   + E++  G +++     ++++ + 
Sbjct: 273 V----QMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKAIG 328

Query: 264 SEGEL 268
           S   L
Sbjct: 329 SSSSL 333



 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 92/204 (45%), Gaps = 13/204 (6%)

Query: 48  TINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL 107
           T  S+L A   S      R+++ +I         +   S+IS+  +      +  +   +
Sbjct: 319 TFASVLKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFISM 378

Query: 108 KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI 167
           +  NL+     +N++M+G  +    +  + + ++M + +V+PD  TF  ++  CS+   +
Sbjct: 379 EAPNLVS----WNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVGLV 434

Query: 168 ---IKYYEQLKSAG---GQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS 221
              ++Y+  +K  G   G  T++ +  +++     G   +A  ++    +P+K  + V  
Sbjct: 435 DKGLEYFNLMKDKGYLVGARTEH-YACMVDLLGRAGYLNEAEYLI--NGMPIKPGASVYR 491

Query: 222 ALVSALASHGRTSDAIIVYEEIKE 245
           AL+SA   HG     I V + + E
Sbjct: 492 ALLSACQIHGNLEIVIRVSKRLIE 515


>gi|290985263|ref|XP_002675345.1| predicted protein [Naegleria gruberi]
 gi|284088941|gb|EFC42601.1| predicted protein [Naegleria gruberi]
          Length = 1231

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 121/256 (47%), Gaps = 26/256 (10%)

Query: 17  LITYSCDLLKVHV-------ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           +IT++C L++ HV       A++V+ +M    + P++ T N +L AC +S  F   + I+
Sbjct: 494 VITWTC-LIQAHVQNKEVRQAIEVITEMQDYGIEPNSTTFNILLTACADSKLFEEGKLIH 552

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
                +    ++E   S+I+   K    ++A    + LK   LM   +++N ++  + + 
Sbjct: 553 EQAIENVKDCSTELLTSIINFYTKCGHPETAIKECEKLKLKGLMNNVAVWNCLIQAHIQN 612

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVF 186
            +VQ A+ ++ EM+Q  + PDS T++ ++  C++    E+    +EQ        +  + 
Sbjct: 613 NEVQKAIEIITEMQQFGLNPDSTTYTIILKACTDSNLFEEGKFIHEQAIENVKDCSTELL 672

Query: 187 MALINAYTTC-------GEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
            ++I+ YT C       GE EK +   L   I       V + L+ A   +     +I +
Sbjct: 673 TSIISFYTKCGHPEVSIGECEKLQSKGLMNNIA------VWNCLIQAHIQNNEVQKSIKI 726

Query: 240 YEEIKEAGCNLEPRAV 255
             E+++ G  +EP + 
Sbjct: 727 ITEMQDYG--IEPNST 740



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 84/381 (22%), Positives = 164/381 (43%), Gaps = 50/381 (13%)

Query: 12  ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPM 71
            S+  L+     + ++  A+D V +M Q ++ P+  T + +L AC +      ++     
Sbjct: 212 VSFTCLVEAYIQINEIQKAIDTVTEMKQFKVTPNATTFSILLTACAK------LKLYKEG 265

Query: 72  ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131
           I  H +  N+    S + L   I +F + Y           +     +N ++  Y + K+
Sbjct: 266 ILIHKIANNTLRDNSSLKLLTSIINFYTKY-----------IKKYYGWNCLIQAYIQNKE 314

Query: 132 VQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKS----AGGQITKY--- 184
           V+ A+ ++ EM+   V+P+S TF+ L+  C++     K +E+ K+    A G +  Y   
Sbjct: 315 VRQAIEIITEMQDYGVEPNSTTFNILLTACADS----KLFEEGKAIHKLATGTLKDYSSE 370

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +  +++N YT CG  E A +     +      + V + L+ A   +     AI V  E++
Sbjct: 371 LLASIVNFYTKCGHPETAIKECEQLKSKGLMNNIVWNCLIQAYIQNKEVRQAIEVITEMQ 430

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSA 304
           + G  +EP +    I              LL+   D   + +G    +LH    + L++ 
Sbjct: 431 DYG--IEPNSTTFNI--------------LLKACADSKLFEEG---KLLHQASGQVLNNP 471

Query: 305 TDLLKQLKDKF-KDDEMAMEYHFSEIFCQI-ATTDPPDVQIGLDLLQFIKDELGLPPSRK 362
           T  L    D+F K      E +     C I A     +V+  ++++  ++D  G+ P+  
Sbjct: 472 TIELNNTIDQFEKMKTKGFEANVITWTCLIQAHVQNKEVRQAIEVITEMQD-YGIEPNST 530

Query: 363 CLDFLLGACVNARDLKRAHLI 383
             + LL AC +++  +   LI
Sbjct: 531 TFNILLTACADSKLFEEGKLI 551



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 121/259 (46%), Gaps = 38/259 (14%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           +V  A++++ +M Q  L P + T   IL AC +S  F   + I+     +    ++E   
Sbjct: 614 EVQKAIEIITEMQQFGLNPDSTTYTIILKACTDSNLFEEGKFIHEQAIENVKDCSTELLT 673

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           S+IS   K    + +    + L+   LM   +++N ++  + +  +VQ ++ ++ EM+  
Sbjct: 674 SIISFYTKCGHPEVSIGECEKLQSKGLMNNIAVWNCLIQAHIQNNEVQKSIKIITEMQDY 733

Query: 146 NVKPDSQTFSYLIHNCSNEEDIIKYYEQLKS----AGGQITKY---VFMALINAYTTCG- 197
            ++P+S TF+ L+  C++     K +E+ K+    A G +  Y   +  +++N YT CG 
Sbjct: 734 GIEPNSTTFNILLTACADS----KLFEEGKAIHKLATGTLKDYSAELLASIVNFYTKCGH 789

Query: 198 ---EFEKARQV--------------VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
                E+  Q+              ++ A I   + ++  S +   L      + A++V+
Sbjct: 790 PEVSIEECEQLKSKGLMNNVAIWNCLIQAHIQNTTNTQNPSTIEYGL------NKAMVVF 843

Query: 241 EEIKEAGCNLEPRAVIALI 259
            E+KE   ++EP  +  LI
Sbjct: 844 NEMKE---HIEPDKITYLI 859



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 99/222 (44%), Gaps = 18/222 (8%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNL-KPNSETFRSMI 88
           AL +V  M   ++ P+      +L A        +   +Y ++   NL  P   T  ++I
Sbjct: 22  ALAIVLNMKGKDIEPNYAIYIPLLKAATVKKNIQVGMTLYQLVKKSNLASPQLST--TII 79

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
           S  +K++  +     ++ +K+   M T   +N+++  Y ++ +++ A+ V+ EM+   + 
Sbjct: 80  SFALKLRKPELVIEEIELVKQQKWM-TIITWNSLIQAYIQENNIKKAIDVIHEMKDNGIC 138

Query: 149 PDSQTFSYLIHNCSNE----EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204
           PDS TF+ LI  C+N     E  + +     +     +  +  ++IN YT CG       
Sbjct: 139 PDSATFNILITACANTKLFAEGKLIHKITTNTLKDNCSVELLTSIINFYTKCGH------ 192

Query: 205 VVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA 246
                EI +    ++KS  +  + S     +A I   EI++A
Sbjct: 193 ----PEIAINECEKMKSKGLMNVVSFTCLVEAYIQINEIQKA 230


>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 575

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/300 (21%), Positives = 132/300 (44%), Gaps = 8/300 (2%)

Query: 1   MHAKLE---ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACE 57
           M+ K++   + P+  +Y  ++   C   +   A  V ++M +  +  +  T N+++    
Sbjct: 255 MYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLC 314

Query: 58  ESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTAS 117
              + N   ++   +  + + PN  T+ ++I     +     A SL  DLK   L P+  
Sbjct: 315 REMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLV 374

Query: 118 MYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS---NEEDIIKYYEQL 174
            YN +++G+ RK D  GA  ++KEME+  +KP   T++ LI   +   N E  I+    +
Sbjct: 375 TYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSM 434

Query: 175 KSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRT 233
           +  G     + +  LI+ +   G+  +A ++     E  ++    + + ++      G +
Sbjct: 435 EELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSS 494

Query: 234 SDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY-WMDGCCRLI 292
             A+ ++ +++E        +   LI  L  E +L     L+E++ D      D  C LI
Sbjct: 495 YRALRLFRDMEEKELAPNVASYSYLIRVLCKERKLKEAEDLVEKMIDSGIDPSDTICNLI 554



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 89/466 (19%), Positives = 181/466 (38%), Gaps = 59/466 (12%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLK----------- 78
           A  ++ Q++ G++     T +S+LH   ES       R+Y +I +  ++           
Sbjct: 58  AQSLLLQVISGKIQSQFFTSSSLLHYLTESETSKTKSRLYEVIINAYVQSQSLDSSIYYF 117

Query: 79  ---------PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
                    P S  F ++++  V    F+  +   ++ K   ++   S +  ++ G    
Sbjct: 118 NEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNESKIKVVLDVYS-FGIVIKGCCEA 176

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVF 186
            +++ +  +L E+ +    P+   ++ LI  C  + +I K    + ++   G    ++ +
Sbjct: 177 GEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTY 236

Query: 187 MALINAYTTCG----EFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             LI+     G     FE   ++      P        + +++ L   GRT DA  V++E
Sbjct: 237 TVLIHGLFKNGIKKQGFEMYEKMQEHGVFP---NLYTYNCVMNQLCKDGRTKDAFKVFDE 293

Query: 243 IKEAGCNLEPRAVIALIEHLNSE---GELNRLI-QLLEEVHDPDY-----WMDGCCRLIL 293
           ++E G +        LI  L  E    E N+++ Q+   V +P+       +DG C +  
Sbjct: 294 MRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSV-- 351

Query: 294 HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKD 353
                 +L  A  L + LK +     +         FC+   T       G   +    +
Sbjct: 352 -----GKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTS------GAAKMVKEME 400

Query: 354 ELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRK 413
           E G+ PS+     L+     + +++ A  +    E  GL  +V +Y  +   F   G   
Sbjct: 401 ERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMN 460

Query: 414 SASKLLSKM------PKDDPHVRFVIQACKQTYTIPSLQKERGFEK 453
            AS+L   M      P +  +   ++  CK+  +  +L+  R  E+
Sbjct: 461 EASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEE 506


>gi|255551050|ref|XP_002516573.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544393|gb|EEF45914.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 396

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 97/215 (45%), Gaps = 4/215 (1%)

Query: 37  MVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKD 96
           MV     P   T N+I  A   + E NL   +   + +  ++PN  T  ++IS   K   
Sbjct: 1   MVVSGRQPDVVTYNTIATAYVRNEETNLAEEMISEMQNTGVQPNERTCGTVISGYCKEGR 60

Query: 97  FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSY 156
              A   +  +KE+ + P   ++N+++ G+    D  G   VLK ME+ NVKPD  TFS 
Sbjct: 61  IKEALRFVHRMKELGVHPNLVVFNSLIKGFVDIMDRNGVDEVLKLMEEFNVKPDVITFST 120

Query: 157 LIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIP 212
           +++  S    + K    ++ +  AG Q   + +  L   Y    E EKA Q++    E  
Sbjct: 121 IMNAWSKAGYMNKCREIFDDMMKAGIQPDGHAYSILAKGYVRAQEPEKAEQLLTTMMESG 180

Query: 213 VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
                 + + ++S   S  R   AI V++++ E G
Sbjct: 181 FHPNVVIFTTVISGWCSTDRMDCAIRVFDKMCEYG 215



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/233 (19%), Positives = 103/233 (44%), Gaps = 4/233 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +   +I+  C   ++  AL  V +M +  + P+    NS++    +  + N V 
Sbjct: 41  VQPNERTCGTVISGYCKEGRIKEALRFVHRMKELGVHPNLVVFNSLIKGFVDIMDRNGVD 100

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +  ++   N+KP+  TF ++++   K    +    + DD+ +  + P    Y+ +  GY
Sbjct: 101 EVLKLMEEFNVKPDVITFSTIMNAWSKAGYMNKCREIFDDMMKAGIQPDGHAYSILAKGY 160

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITK 183
            R ++ + A  +L  M ++   P+   F+ +I   CS +  +  I+ ++++   G     
Sbjct: 161 VRAQEPEKAEQLLTTMMESGFHPNVVIFTTVISGWCSTDRMDCAIRVFDKMCEYGISPNL 220

Query: 184 YVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSD 235
             F  LI  ++   +  KA  ++ +  E  V+ +      +  A  S G T +
Sbjct: 221 KTFETLIGGFSEAKQPWKAEDILQIMREYNVEPKKSTMLLVAEAWGSIGLTKE 273


>gi|168026089|ref|XP_001765565.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683203|gb|EDQ69615.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 505

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 83/426 (19%), Positives = 168/426 (39%), Gaps = 54/426 (12%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P++ +Y  +I        V   L + +QM++ + VP   T N ++ +  ++ +      +
Sbjct: 63  PTAYTYSSMIQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEACNV 122

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +   N+ P+  T+  +I     I   D+   L + +      P    Y+++M  +  
Sbjct: 123 FGDMFKLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGS 182

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLI-------------------HNCSNE----- 164
              V  A  + ++M Q  ++PD+ T++ LI                    + +NE     
Sbjct: 183 AGRVDEACDIFQQMVQKGLQPDAVTYNILIDAFGKTGQLERAFDFVGKSRSFTNEVTYNS 242

Query: 165 -----------EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIP 212
                      + +++ + Q+K+ G    +  +  LI      G  E   Q+ L+  +  
Sbjct: 243 LLSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIERLGWAGRVEDVWQLYLEMVDND 302

Query: 213 VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLI 272
           +K      + ++  L+  GR   A  +++++K  G N +      LI  L   G+L+   
Sbjct: 303 IKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAG 362

Query: 273 QLLEEVHDPDYWMDGCC-------RLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYH 325
            LL E+ +     +GC         LI    ++  LS+AT L  ++K++     +     
Sbjct: 363 ALLLEMEE-----NGCAPNIITYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSS 417

Query: 326 FSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWK 385
             E F +   TD       + L + +K E G PP+    + L+   + A     A    +
Sbjct: 418 LIEGFGKAGRTDAA-----ISLFREMKAE-GCPPNHVTYNLLIDCLIRAGRFGAAMEYLR 471

Query: 386 EYENAG 391
           E  +AG
Sbjct: 472 EMRDAG 477



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 83/431 (19%), Positives = 172/431 (39%), Gaps = 79/431 (18%)

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
           V+R+   +     K +++ F ++I +  +    + A   L    +    PTA  Y++++ 
Sbjct: 14  VQRLVESMQKDRTKLDTQLFNTLIHIYGEANMMEKALQTLAAFTKEGGRPTAYTYSSMIQ 73

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED------------------ 166
            + +  DVQ  L++ K+M +A   PD  TF+ LI + +  +                   
Sbjct: 74  VFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEACNVFGDMFKLNVSP 133

Query: 167 --------------------IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA---- 202
                               ++K +E + + G Q   + + ++++A+ + G  ++A    
Sbjct: 134 DVYTYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVDEACDIF 193

Query: 203 --------------RQVVLDA-----------EIPVKSRS---EVK-SALVSALASHGRT 233
                           +++DA           +   KSRS   EV  ++L+S+L   G  
Sbjct: 194 QQMVQKGLQPDAVTYNILIDAFGKTGQLERAFDFVGKSRSFTNEVTYNSLLSSLGRKGDI 253

Query: 234 SDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD-GCCRLI 292
              + ++ ++K  G          LIE L   G +  + QL  E+ D D   D      +
Sbjct: 254 QGLMELFGQMKAKGLVSNELTYAILIERLGWAGRVEDVWQLYLEMVDNDIKYDIVTINNV 313

Query: 293 LHCV-RFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFI 351
           L C+ +  ++ +A +L + +K K  + +      ++ +   +      D   G  LL+  
Sbjct: 314 LDCLSKAGRVEAAFELFQDMKFKGLNADTVT---YNILINGLGRAGKLDAA-GALLLEM- 368

Query: 352 KDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGN 411
            +E G  P+    + L+ +     +L  A  ++ E +  G+  NV+SY  + + F  +G 
Sbjct: 369 -EENGCAPNIITYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAGR 427

Query: 412 RKSASKLLSKM 422
             +A  L  +M
Sbjct: 428 TDAAISLFREM 438



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 32/161 (19%), Positives = 72/161 (44%), Gaps = 3/161 (1%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           +V  A ++ + M    L   T T N +++    + + +    +   +  +   PN  T+ 
Sbjct: 322 RVEAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGALLLEMEENGCAPNIITYN 381

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           ++IS   K  +  +A  L  ++KE  + P    Y++++ G+ +      A+ + +EM+  
Sbjct: 382 TLISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKAE 441

Query: 146 NVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITK 183
              P+  T++ LI            ++Y  +++ AG Q+ K
Sbjct: 442 GCPPNHVTYNLLIDCLIRAGRFGAAMEYLREMRDAGCQMGK 482



 Score = 45.4 bits (106), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 83/190 (43%), Gaps = 4/190 (2%)

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
           V ++Y  +  +++K +  T  +++    K    ++A+ L  D+K   L      YN ++ 
Sbjct: 291 VWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILIN 350

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQI 181
           G  R   +  A  +L EME+    P+  T++ LI +    SN     + + ++K  G   
Sbjct: 351 GLGRAGKLDAAGALLLEMEENGCAPNIITYNTLISSYGKWSNLSAATRLFLEMKERGVAP 410

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVY 240
               + +LI  +   G  + A  +  + +      + V  + L+  L   GR   A+   
Sbjct: 411 NVVSYSSLIEGFGKAGRTDAAISLFREMKAEGCPPNHVTYNLLIDCLIRAGRFGAAMEYL 470

Query: 241 EEIKEAGCNL 250
            E+++AGC +
Sbjct: 471 REMRDAGCQM 480


>gi|334184699|ref|NP_001189682.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330253975|gb|AEC09069.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 613

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/261 (21%), Positives = 120/261 (45%), Gaps = 4/261 (1%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+DV ++M +    P+TET N +++   ++ +  +  ++Y  +  H  KPN  T+ ++++
Sbjct: 270 AIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVN 329

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              +    + A  + + L+E  L P   +YNA+M  Y R     GA  +   M+    +P
Sbjct: 330 AFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEP 389

Query: 150 DSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D  +++ ++          D    +E++K  G   T    M L++AY+   +  K   +V
Sbjct: 390 DRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIV 449

Query: 207 LD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
            + +E  V+  + V +++++     G+ +    +  E++   C  +      LI      
Sbjct: 450 KEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKA 509

Query: 266 GELNRLIQLLEEVHDPDYWMD 286
           G L R+ +L  E+ + ++  D
Sbjct: 510 GFLERIEELFVELKEKNFRPD 530



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 79/179 (44%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L I P+  S+  L++       V     +V++M +  + P T  +NS+L+      +F 
Sbjct: 419 RLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFT 478

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
            + +I   + +     +  T+  +I++  K    +    L  +LKE N  P    + + +
Sbjct: 479 KMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRI 538

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQIT 182
             Y RKK     L V +EM  +   PD  T   L+  CS+EE + +    L++    +T
Sbjct: 539 GAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQVTSVLRTMHKGVT 597



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/277 (16%), Positives = 119/277 (42%), Gaps = 8/277 (2%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  L+           A ++ EQ+ +  L P     N+++ +   +        I
Sbjct: 319 PNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEI 378

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           + ++ H   +P+  ++  M+    +      A ++ +++K + + PT   +  +++ Y +
Sbjct: 379 FSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSK 438

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYV 185
            +DV     ++KEM +  V+PD+   + +++          + K   ++++         
Sbjct: 439 ARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADIST 498

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTS---DAIIVYEE 242
           +  LIN Y   G  E+  ++ +  E+  K+         S + ++ R       + V+EE
Sbjct: 499 YNILINIYGKAGFLERIEELFV--ELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEE 556

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279
           + ++GC  +      L+   +SE ++ ++  +L  +H
Sbjct: 557 MIDSGCAPDGGTAKVLLSACSSEEQVEQVTSVLRTMH 593



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 90/209 (43%), Gaps = 28/209 (13%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
           + +P+   F  +I    +   +  A SL   L E   +PT   Y  ++  Y     ++ A
Sbjct: 172 SFQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERA 231

Query: 136 LMVLKEMEQANVKPDSQTFSYLIHNC---------SNEEDIIKYYEQLKSAGGQITKYVF 186
            +VL EM+  +V P  +T    ++N           N E+ I  ++++K    + T   +
Sbjct: 232 EVVLVEMQNHHVSP--KTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETY 289

Query: 187 MALINAYTTCGEFEKARQVVLDAEIPVKSRSE-------VKSALVSALASHGRTSDAIIV 239
             +IN Y       KA +  +  ++  + RS          +ALV+A A  G    A  +
Sbjct: 290 NLMINLYG------KASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEI 343

Query: 240 YEEIKEAGCNLEPRAVI--ALIEHLNSEG 266
           +E+++E G  LEP   +  AL+E  +  G
Sbjct: 344 FEQLQEDG--LEPDVYVYNALMESYSRAG 370


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 82/441 (18%), Positives = 181/441 (41%), Gaps = 44/441 (9%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           KL I P + ++  LI   C+  K+  A+++  +MV+    P+  +  ++++   ++   +
Sbjct: 156 KLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTS 215

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
           +   ++  +  +  KPN  T+ ++I    K +  + A   L ++ E  + P    YN+I+
Sbjct: 216 MAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIV 275

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQ 180
            G+     +  A  + KEM   +V P++ TF+ L+     E  + +    +E +   G +
Sbjct: 276 HGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVE 335

Query: 181 ITKYVFMALINAYT------------------TCGEFEKARQVVLDAEIPVKSRSEVKSA 222
                + AL++ Y                    C     +  ++++     +   E KS 
Sbjct: 336 PDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSL 395

Query: 223 LVSALASHGRTSDAIIVYEEIKEAGCNL-EPRAVIALIEHLNSEGELNRLIQLLEEVHDP 281
           L  A   H   +   + Y  + +  C L  P+  + L + + S G    L+  +      
Sbjct: 396 L--AEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYV------ 447

Query: 282 DYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDV 341
              +DG C       +   L  A  LLK +K+K  +  +    H++ +   +       +
Sbjct: 448 -ILLDGFC-------KHGHLDEALKLLKSMKEKKLEPNIV---HYTILIEGMFIAG--KL 494

Query: 342 QIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLW 401
           ++  +L   +  + G  P  +    ++   +       A+ ++++ E+ G   N  SY  
Sbjct: 495 EVAKELFSKLFGD-GTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNV 553

Query: 402 MYKAFLASGNRKSASKLLSKM 422
           M + FL + +  +A +L+ +M
Sbjct: 554 MIQGFLQNQDSSTAIRLIDEM 574



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 84/457 (18%), Positives = 174/457 (38%), Gaps = 79/457 (17%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFN 63
             +T +  S   LI   C L  V  ++ V+ +M +  + P   T N++++  C E     
Sbjct: 122 FRVTHNVYSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEG---- 177

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
                                        KIK+   A  L +++ +    P    Y  ++
Sbjct: 178 -----------------------------KIKE---AVELFNEMVKRGHEPNVISYTTVI 205

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQ 180
            G  +  +   A+ V K+MEQ   KP+  T+S +I + C +    D +++  ++   G  
Sbjct: 206 NGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIP 265

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
              + + ++++ +   G+  +A ++  +     V   +   + LV  L   G  S+A +V
Sbjct: 266 PNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLV 325

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE---------EVHDPDYWMDGCCR 290
           +E + E G   +     AL++    +  +N   ++ E           H  +  ++G C+
Sbjct: 326 FETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCK 385

Query: 291 LILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQF 350
                   +++  A  LL ++  K  + +        +  CQ+            + L  
Sbjct: 386 S-------RRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPK--------EALNL 430

Query: 351 IKDELGLPPSRKCLDFLL---GACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFL 407
            K+     P    + +++   G C +   L  A  + K  +   L  N++ Y  + +   
Sbjct: 431 FKEMCSYGPHPNLVTYVILLDGFCKHGH-LDEALKLLKSMKEKKLEPNIVHYTILIEGMF 489

Query: 408 ASGNRKSASKLLSKMPKDD--PHVRFVIQACKQTYTI 442
            +G  + A +L SK+  D   P +R        TYT+
Sbjct: 490 IAGKLEVAKELFSKLFGDGTRPDIR--------TYTV 518



 Score = 45.8 bits (107), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 33/170 (19%), Positives = 78/170 (45%), Gaps = 1/170 (0%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  L+   C    +  AL +++ M + +L P+      ++     + +  + + +
Sbjct: 441 PNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKEL 500

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +     +P+  T+  MI   +K    D AY L   +++   +P +  YN ++ G+ +
Sbjct: 501 FSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQ 560

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAG 178
            +D   A+ ++ EM       +  TF  L+ +  ++++II  + +  S G
Sbjct: 561 NQDSSTAIRLIDEMVGKRFSVNLSTFQMLL-DLESQDEIISQFMRGSSQG 609



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 66/370 (17%), Positives = 136/370 (36%), Gaps = 26/370 (7%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
           N +P+   F   +    K K + +  SL + +    +       N ++    R   V  +
Sbjct: 88  NPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNILINCLCRLNHVDFS 147

Query: 136 LMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINA 192
           + VL +M +  + PD+ TF+ LI+   NE  I   ++ + ++   G +     +  +IN 
Sbjct: 148 VSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVING 207

Query: 193 YTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLE 251
               G    A  V    E    K      S ++ +L      +DA+    E+ E G    
Sbjct: 208 LCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPN 267

Query: 252 PRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW---------MDGCCRLILHCVRFKQLS 302
                +++    + G+LN   +L +E+   D           +DG C+  +       +S
Sbjct: 268 VFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGM-------VS 320

Query: 303 SATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRK 362
            A  + + + +K  + +++      + +C     +       + + +      G  P   
Sbjct: 321 EARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRK------GCAPGAH 374

Query: 363 CLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
             + L+     +R +  A  +  E  +  L  + ++Y  + +     G  K A  L  +M
Sbjct: 375 SYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEM 434

Query: 423 PKDDPHVRFV 432
               PH   V
Sbjct: 435 CSYGPHPNLV 444


>gi|115444491|ref|NP_001046025.1| Os02g0170000 [Oryza sativa Japonica Group]
 gi|49388067|dbj|BAD25179.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535556|dbj|BAF07939.1| Os02g0170000 [Oryza sativa Japonica Group]
          Length = 397

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 126/286 (44%), Gaps = 11/286 (3%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +  P+  +Y  L+   C+   +H A  V+ +M +  + P+    N+ L    ++      
Sbjct: 7   QCVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKA 66

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +Y  +     + N+ETF  MI++  K K   S+  + +++K +   P    Y A++  
Sbjct: 67  VEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNA 126

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQIT 182
           + R+   + A  V +EM+QA  +PD   ++ L+   S     +   + +  ++  G +  
Sbjct: 127 FAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPD 186

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAII---V 239
           +  +  L++AY   G  E A  V    E+  +  S    + +  LA+H R+ +A     V
Sbjct: 187 RASYNILVDAYGRAGLHEDAEAVF--EELKQRGMSPTMKSHMLLLAAHARSGNATRCEEV 244

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELN---RLIQLLEEVHDPD 282
             ++ ++G   +  A+ A++      G L+   RL   +E   D D
Sbjct: 245 MAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAAMERRGDAD 290



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/247 (19%), Positives = 110/247 (44%), Gaps = 4/247 (1%)

Query: 37  MVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKD 96
           +++ + VP+ +T   +L A   +   +    +   +  H + PN+  + + +   +K + 
Sbjct: 3   LLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARC 62

Query: 97  FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSY 156
            + A  +   +K          +  ++  Y + K    ++ V  EM+    KP+  T++ 
Sbjct: 63  TEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTA 122

Query: 157 LIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIP 212
           L++  + E   E   + +E+++ AG +   Y + AL+ AY+  G  + A ++  L   + 
Sbjct: 123 LVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMG 182

Query: 213 VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLI 272
            +      + LV A    G   DA  V+EE+K+ G +   ++ + L+      G   R  
Sbjct: 183 CEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCE 242

Query: 273 QLLEEVH 279
           +++ ++H
Sbjct: 243 EVMAQLH 249



 Score = 42.7 bits (99), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 42/275 (15%), Positives = 110/275 (40%), Gaps = 5/275 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  L+           A +V E+M Q    P     N+++ A   +        I
Sbjct: 115 PNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEI 174

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           + ++ H   +P+  ++  ++    +    + A ++ ++LK+  + PT   +  ++A + R
Sbjct: 175 FSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHAR 234

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYV 185
             +      V+ ++ ++ + PD+   + +++        +D+ + +  ++  G       
Sbjct: 235 SGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAAMERRGDADVG-T 293

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIK 244
           +   +NAY   G   +             +   V  +A + A A        + + EE+ 
Sbjct: 294 YNVAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMVEEMV 353

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279
           +AGC  +      L+   + E ++ ++  ++  +H
Sbjct: 354 DAGCYPDAGTARVLLAACSDERQVEQVTAIVRSMH 388


>gi|452824731|gb|EME31732.1| mitochondrial protein translocase, MPT family [Galdieria
           sulphuraria]
          Length = 645

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 16/191 (8%)

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
           +R I+ ++ H  L P+   + ++I   V++ D  SA    D L   +L P    YN++M 
Sbjct: 421 IRHIWKLV-HSKLNPDLTFYNALIDAFVRMGDIHSAQEAFDSLASHSLEPDVISYNSLMH 479

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED-------IIKYYEQLKSA 177
           GY R  D+   L ++++M +A V+ D +T+   I  C N  D           YE  ++ 
Sbjct: 480 GYARNGDLSSCLTLMQKMREAGVRMDERTYCIGIVACKNAGDPDHAMKIYFDAYENGRAQ 539

Query: 178 GGQITKYVFMALINAYTTCG-EFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDA 236
           G  +   V       YT CG +FE AR++        +         +    + GR   A
Sbjct: 540 GEVLHHAV-------YTACGPKFENARRIWKAMTAVYQPGFASYKGFLGCCGAAGRIDIA 592

Query: 237 IIVYEEIKEAG 247
           +    E+K+ G
Sbjct: 593 LDTVREMKQRG 603


>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Glycine max]
          Length = 642

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 105/244 (43%), Gaps = 4/244 (1%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P+  T N ++ A       +    ++  I   N  P++ T+ +++    K +  D A SL
Sbjct: 168 PNALTFNLVIKAMCRLGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEERIDEAVSL 227

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC-- 161
           LD+++     P    +N +++   +K D+  A  ++  M      P+  T++ L+H    
Sbjct: 228 LDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHGLCL 287

Query: 162 -SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE-V 219
               E  +    Q+ S         F  LIN +   G      +V++  E      +E V
Sbjct: 288 KGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGHRGNEYV 347

Query: 220 KSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279
            S+L+S L   G+ + A+ +++E+   GC        ALI+ L  EG+L+     L E+ 
Sbjct: 348 YSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMK 407

Query: 280 DPDY 283
           +  Y
Sbjct: 408 NKGY 411



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 90/434 (20%), Positives = 173/434 (39%), Gaps = 42/434 (9%)

Query: 30  ALDVVEQMVQGELV--PSTETINSILHACEESYEFNLVRRIYPMICHH---NLKPNSETF 84
           A+D+  +M  GE     + ++ NS+L+   +   FN     Y  +      N+ PN+ TF
Sbjct: 115 AVDLFHRM-WGEFQCKQTVKSFNSVLNVIVQEGLFNRALEFYNHVVASKSLNIHPNALTF 173

Query: 85  RSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQ 144
             +I    ++   D A  +  ++   N  P    Y+ +M G  +++ +  A+ +L EM+ 
Sbjct: 174 NLVIKAMCRLGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEERIDEAVSLLDEMQV 233

Query: 145 ANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEK 201
               P+   F+ LI     + D+    K  + +   G    +  + AL++     G+ EK
Sbjct: 234 EGTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHGLCLKGKLEK 293

Query: 202 A----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIA 257
           A     Q+V +  +P          L++     GR SD   V   ++  G         +
Sbjct: 294 AVSLLNQMVSNKCVP---NDVTFGTLINGFVMQGRASDGTRVLVSLEARGHRGNEYVYSS 350

Query: 258 LIEHLNSEGELNRLIQLLEEV----HDPDY-----WMDGCCRLILHCVRFKQLSSATDLL 308
           LI  L  EG+ N+ ++L +E+      P+       +DG CR         +L  A   L
Sbjct: 351 LISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCRE-------GKLDEARGFL 403

Query: 309 KQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLL 368
            ++K+K     +   + +S +       +  D    + + + + +      +  C   L+
Sbjct: 404 SEMKNK---GYLPNSFTYSSLM--RGYFEAGDSHKAILVWKEMANN-NCIHNEVCYSILI 457

Query: 369 GACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPH 428
                      A ++WK+  + G+  +V++Y  M   F  +   +   KL ++M    P 
Sbjct: 458 NGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQGLKLFNQMLCQGP- 516

Query: 429 VRFVIQACKQTYTI 442
              V+Q    TY I
Sbjct: 517 ---VVQPDVITYNI 527



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/201 (21%), Positives = 85/201 (42%), Gaps = 3/201 (1%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
            P+  +Y  L+   C   K+  A+ ++ QMV  + VP+  T  ++++        +   R
Sbjct: 272 VPNEVTYNALVHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTR 331

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +   +     + N   + S+IS   K   F+ A  L  ++      P   +Y+A++ G  
Sbjct: 332 VLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLC 391

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKY 184
           R+  +  A   L EM+     P+S T+S L+       +    I  ++++ +      + 
Sbjct: 392 REGKLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEV 451

Query: 185 VFMALINAYTTCGEFEKARQV 205
            +  LIN     G+F +A  V
Sbjct: 452 CYSILINGLCKDGKFMEALMV 472


>gi|33146592|dbj|BAC79788.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 749

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/245 (20%), Positives = 123/245 (50%), Gaps = 14/245 (5%)

Query: 29  VALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
           +A+    +M +  + P+  +++S+L AC    +      ++ +   H    +     +++
Sbjct: 143 LAVAAFARMARAGVSPTASSVSSVLVACVRLEDAAAGATLHSVGLMHGFCASVVVGTALV 202

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
            +  K     +A  +  +++E N+    + + A++AG+   +    A+++++EME++ V 
Sbjct: 203 DMYAKCHHLGAAQQVFREMEEKNV----ATFTALVAGFVLSRRPHDAMLLVREMERSGVA 258

Query: 149 PDSQTFSYLIHNCSNEEDIIKYYEQLKSA----GGQITKYVFMALINAYTTCGEFEKARQ 204
           P+  T+S L+ + ++ ED I + +Q+  A    G +  ++V  AL+  Y+ CG  E   +
Sbjct: 259 PNLMTYSSLLSSFASPED-IDHGKQVHCAVLKKGLEHDQFVLSALVTMYSKCGILENFVK 317

Query: 205 VVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
           V    ++ V  + +V  ++++S L+  GR  +A   + E++  G +++     ++++ + 
Sbjct: 318 V----QMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKAIG 373

Query: 264 SEGEL 268
           S   L
Sbjct: 374 SSSSL 378



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 92/204 (45%), Gaps = 13/204 (6%)

Query: 48  TINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL 107
           T  S+L A   S      R+++ +I         +   S+IS+  +      +  +   +
Sbjct: 364 TFASVLKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFISM 423

Query: 108 KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI 167
           +  NL+     +N++M+G  +    +  + + ++M + +V+PD  TF  ++  CS+   +
Sbjct: 424 EAPNLVS----WNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVGLV 479

Query: 168 ---IKYYEQLKSAG---GQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS 221
              ++Y+  +K  G   G  T++ +  +++     G   +A  ++    +P+K  + V  
Sbjct: 480 DKGLEYFNLMKDKGYLVGARTEH-YACMVDLLGRAGYLNEAEYLI--NGMPIKPGASVYR 536

Query: 222 ALVSALASHGRTSDAIIVYEEIKE 245
           AL+SA   HG     I V + + E
Sbjct: 537 ALLSACQIHGNLEIVIRVSKRLIE 560


>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/255 (20%), Positives = 117/255 (45%), Gaps = 19/255 (7%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS 86
           +H    + + ++Q    P+ +T++ ++  C        ++ ++  I  H L     T   
Sbjct: 17  IHTETQISKTILQELKSPTHQTLHYLIDQC---ISLKQLKHVHAQIILHGLATQVLTLGK 73

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           ++S +V+++D   A+ L D + +    P   M+N ++ GY    D   +L++ + M    
Sbjct: 74  LVSSSVQLRDLRYAHKLFDQIPQ----PNKFMFNHLIKGYSNSSDPIKSLLLYRRMVCDG 129

Query: 147 VKPDSQTFSYLIHNCSNEE----DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
           + P+  T  +++  C+ +      +  + +  K   G     V  A++N Y  CG    A
Sbjct: 130 ILPNQFTIPFVLKACAAKSCYWLGVCVHAQSFKLGMGS-HACVQNAILNIYVACGLITSA 188

Query: 203 RQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEH 261
           R+V  D    +  R+ V  +++++  +  GR+ +A++++ E++E G   +   ++ L+  
Sbjct: 189 RRVFDD----ISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSV 244

Query: 262 LNSEG--ELNRLIQL 274
               G  +L R + L
Sbjct: 245 STKHGNFDLGRFVHL 259



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 64/318 (20%), Positives = 141/318 (44%), Gaps = 24/318 (7%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+D+  +M    ++ +  T+ +IL +C    +  L ++ +  I  +N+  ++    ++I 
Sbjct: 351 AVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAIID 410

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K     +A  +   + E N    A  +N I+         + A+ + ++M+ + V P
Sbjct: 411 MYAKCGALQTAMDVFFGMPEKN----AVSWNVIIGALALHGYGKEAIEMFEKMQASGVCP 466

Query: 150 DSQTFSYLIHNCSNEE--DIIKYYEQLKSAGGQITKYV--FMALINAYTTCGEFEKARQV 205
           D  TF+ L+  CS+    D  ++Y ++ +    I+  V  +  +++     G   +A  +
Sbjct: 467 DEITFTGLLSACSHSGLVDTGQHYFEIMNLTFGISPDVEHYACMVDLLGRRGLLGEA--I 524

Query: 206 VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
            L  ++PVK    V SAL+ A  ++G  +    + +++ E G       +  L+ ++ SE
Sbjct: 525 SLIKKMPVKPDVVVWSALLGACRTYGNLAIGKQIMKQLLELG--RYNSGLYVLLSNMYSE 582

Query: 266 GELNRLIQLLEEVHDPD----------YWMDGCC-RLILHCVRFKQLSSATDLLKQLKDK 314
            +    ++ + ++ D +            +DGCC + ++   R    +S   +L QL D 
Sbjct: 583 SQRWDDMKNIWKILDQNGIKKCRAISFIEIDGCCYQFMVDDKRHGASTSIYSMLGQLMDH 642

Query: 315 FKDDEMAMEY-HFSEIFC 331
            K      ++    EI+C
Sbjct: 643 LKSAGYPCKHLDVEEIYC 660


>gi|297812025|ref|XP_002873896.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319733|gb|EFH50155.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 507

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 121/242 (50%), Gaps = 9/242 (3%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNL--KPNSETFRSMISLNVKIKDFDSAY 101
           PS   I++ L+   +S E +L R++  +   HNL  +PN+  F  ++  + K  D DSA+
Sbjct: 159 PSLNAISTCLNLLIDSGEVDLARKLL-LYAKHNLALQPNTCIFNILVKHHCKNGDIDSAF 217

Query: 102 SLLDDLKEMNL-MPTASMYNAIMAGYFRKKDVQGALMVLKEM-EQANVKPDSQTFSYLIH 159
            +++++K   +  P +  Y+ +M   F +   + A+ + ++M  +  + PD   F+ +I+
Sbjct: 218 RVVEEMKRSGISYPNSITYSTLMDCLFAQSRSKEAVELFEDMISKRGISPDPVIFNVMIN 277

Query: 160 NCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAE-IPVKS 215
                 ++ +     + +K  G     Y + AL+N +   G+ ++A+QV  + +   +K 
Sbjct: 278 GFCRSGEVERAKMILDFMKKNGCNPNVYNYSALMNGFCKEGKIQEAKQVFDEVKKTGLKL 337

Query: 216 RSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLL 275
            +   + L++ L  +G   +A+ +  E+K + C  +      ++  L+SEG     +Q+L
Sbjct: 338 DTVGYTTLMNCLCRNGEIDEAMKLLGEMKASRCRADALTYNVILRGLSSEGRSEEALQML 397

Query: 276 EE 277
           ++
Sbjct: 398 DQ 399



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 112/226 (49%), Gaps = 17/226 (7%)

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLK-EMNLMPTASMYN 120
           FNL++ I        +KP+     + ++L +   + D A  LL   K  + L P   ++N
Sbjct: 148 FNLIQVIA------RVKPSLNAISTCLNLLIDSGEVDLARKLLLYAKHNLALQPNTCIFN 201

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVK-PDSQTFSYLIHNC----SNEEDIIKYYEQLK 175
            ++  + +  D+  A  V++EM+++ +  P+S T+S L+ +C    S  ++ ++ +E + 
Sbjct: 202 ILVKHHCKNGDIDSAFRVVEEMKRSGISYPNSITYSTLM-DCLFAQSRSKEAVELFEDMI 260

Query: 176 SAGG-QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK--SALVSALASHGR 232
           S  G      +F  +IN +   GE E+A+ ++LD          V   SAL++     G+
Sbjct: 261 SKRGISPDPVIFNVMINGFCRSGEVERAK-MILDFMKKNGCNPNVYNYSALMNGFCKEGK 319

Query: 233 TSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
             +A  V++E+K+ G  L+      L+  L   GE++  ++LL E+
Sbjct: 320 IQEAKQVFDEVKKTGLKLDTVGYTTLMNCLCRNGEIDEAMKLLGEM 365



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/315 (20%), Positives = 126/315 (40%), Gaps = 41/315 (13%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHAC--EESYEF 62
           L + P++  +  L+ + C    +  A  VVE+M +  +        S L  C   +S   
Sbjct: 191 LALQPNTCIFNILVKHHCKNGDIDSAFRVVEEMKRSGISYPNSITYSTLMDCLFAQSRSK 250

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
             V     MI    + P+   F  MI+   +  + + A  +LD +K+    P    Y+A+
Sbjct: 251 EAVELFEDMISKRGISPDPVIFNVMINGFCRSGEVERAKMILDFMKKNGCNPNVYNYSAL 310

Query: 123 MAGYFRKKDVQ-----------------------------------GALMVLKEMEQANV 147
           M G+ ++  +Q                                    A+ +L EM+ +  
Sbjct: 311 MNGFCKEGKIQEAKQVFDEVKKTGLKLDTVGYTTLMNCLCRNGEIDEAMKLLGEMKASRC 370

Query: 148 KPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204
           + D+ T++ ++   S+E   E+ ++  +Q    G  + K  +  ++NA    GE EKA +
Sbjct: 371 RADALTYNVILRGLSSEGRSEEALQMLDQWGCEGVHLNKGSYRIILNALCCNGELEKAVK 430

Query: 205 VV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
            + + ++  +       + LV  L   G T   + V       G    P++  A++E + 
Sbjct: 431 FLSVMSKRGIWPHHATWNELVVRLCESGNTEIGVRVLIGFLGIGLIPAPKSWGAVVESIC 490

Query: 264 SEGELNRLIQLLEEV 278
            E +L  + +LL+ +
Sbjct: 491 KERKLVHVFELLDSL 505


>gi|242056139|ref|XP_002457215.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
 gi|241929190|gb|EES02335.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
          Length = 573

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 87/392 (22%), Positives = 163/392 (41%), Gaps = 24/392 (6%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           PS  ++N++L A   +   +L  R +       + P+  TF  +IS   K      A  +
Sbjct: 151 PSAFSVNALLAALVRADRVDLAERAFRAALRRRVSPDKFTFNIVISGLCKTGQLRKAGDV 210

Query: 104 LDDLKEMNLMPTASMYNAIMAGYF---RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160
             D++   LMP+   YN ++ GY+   R   +    M+LKEM QA + P+  TF+ LI+ 
Sbjct: 211 AKDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMYHVDMLLKEMNQAGISPNVVTFNVLING 270

Query: 161 CSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRS 217
              E +I   IK +E+++  G       + +L++     G+ E + ++V + E    +  
Sbjct: 271 YCKESNITAAIKVFEEMRQHGIPANMVTYTSLVSGLCREGKVEDSMKLVEEMEELGLATL 330

Query: 218 EVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLI--- 272
              +++++     G   +A    + + + G  ++P  V    LI+     G++       
Sbjct: 331 PTLNSVLNGFCKKGMMVEAEGWVDGMAQKG--MKPNVVTYNTLIDGYQRLGKMKEATAAK 388

Query: 273 -QLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKD-KFKDDEMAMEYHFSEIF 330
             +  +   PD     C  LI          S + LL ++K+   K D +        + 
Sbjct: 389 GAMAGKGISPDVKTYNC--LITGFTTSTDWRSVSGLLDEMKETGVKADLVTYNVLIGALC 446

Query: 331 CQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENA 390
           C+       +V+  + LL  +  E+GL P  +  + ++       D K AH I    E  
Sbjct: 447 CK------GEVRKAVKLLDEMV-EVGLEPKHRTYNAIINGFCEKGDAKGAHDIRIRMEKC 499

Query: 391 GLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
               NV++     K F   G    A+ +L++M
Sbjct: 500 KKRANVVTCNVFLKYFCKMGKMDEANVVLNEM 531



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/283 (19%), Positives = 126/283 (44%), Gaps = 16/283 (5%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           ++P   ++  +I+  C   ++  A DV + M    L+PS  T N+++   +  Y++    
Sbjct: 184 VSPDKFTFNIVISGLCKTGQLRKAGDVAKDMRGWGLMPSVVTYNTLI---DGYYKWGRAG 240

Query: 67  RIYPM------ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           ++Y +      +    + PN  TF  +I+   K  +  +A  + +++++  +      Y 
Sbjct: 241 KMYHVDMLLKEMNQAGISPNVVTFNVLINGYCKESNITAAIKVFEEMRQHGIPANMVTYT 300

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE--DIIKYYEQLKSAG 178
           ++++G  R+  V+ ++ +++EME+  +       S L   C      +   + + +   G
Sbjct: 301 SLVSGLCREGKVEDSMKLVEEMEELGLATLPTLNSVLNGFCKKGMMVEAEGWVDGMAQKG 360

Query: 179 GQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRS-EVKS--ALVSALASHGRTSD 235
            +     +  LI+ Y   G+ ++A        +  K  S +VK+   L++   +      
Sbjct: 361 MKPNVVTYNTLIDGYQRLGKMKEA--TAAKGAMAGKGISPDVKTYNCLITGFTTSTDWRS 418

Query: 236 AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
              + +E+KE G   +      LI  L  +GE+ + ++LL+E+
Sbjct: 419 VSGLLDEMKETGVKADLVTYNVLIGALCCKGEVRKAVKLLDEM 461



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 71/160 (44%), Gaps = 6/160 (3%)

Query: 34  VEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVK 93
           V+ M Q  + P+  T N+++   +   +          +    + P+ +T+  +I+    
Sbjct: 353 VDGMAQKGMKPNVVTYNTLIDGYQRLGKMKEATAAKGAMAGKGISPDVKTYNCLITGFTT 412

Query: 94  IKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQT 153
             D+ S   LLD++KE  +      YN ++     K +V+ A+ +L EM +  ++P  +T
Sbjct: 413 STDWRSVSGLLDEMKETGVKADLVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHRT 472

Query: 154 FSYLIH------NCSNEEDIIKYYEQLKSAGGQITKYVFM 187
           ++ +I+      +     DI    E+ K     +T  VF+
Sbjct: 473 YNAIINGFCEKGDAKGAHDIRIRMEKCKKRANVVTCNVFL 512



 Score = 44.7 bits (104), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 61/142 (42%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           A+  + P+  +Y  LI     L K+  A      M    + P  +T N ++     S ++
Sbjct: 357 AQKGMKPNVVTYNTLIDGYQRLGKMKEATAAKGAMAGKGISPDVKTYNCLITGFTTSTDW 416

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
             V  +   +    +K +  T+  +I       +   A  LLD++ E+ L P    YNAI
Sbjct: 417 RSVSGLLDEMKETGVKADLVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHRTYNAI 476

Query: 123 MAGYFRKKDVQGALMVLKEMEQ 144
           + G+  K D +GA  +   ME+
Sbjct: 477 INGFCEKGDAKGAHDIRIRMEK 498


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/284 (21%), Positives = 125/284 (44%), Gaps = 7/284 (2%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQ---GELVPSTETINSILHACEESY 60
           +L   P   SY  L+   CD  +   AL+++  M     G   P   + N++L+   +  
Sbjct: 156 ELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEG 215

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           + +     Y  +    + P+  T+ S+I+   K +  D A  +L+ + +  +MP    YN
Sbjct: 216 DSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYN 275

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSN--EEDIIKYYEQLKSA 177
           +I+ GY      + A+  LK+M    V+P+  T+S L++  C N    +  K ++ +   
Sbjct: 276 SILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKR 335

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDA 236
           G +     +  L+  Y T G   +   ++ L     ++    V + L+ A A   +   A
Sbjct: 336 GLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQA 395

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           ++V+ ++++ G N        +I+ L   G ++  +   E++ D
Sbjct: 396 MLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMID 439



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/264 (17%), Positives = 115/264 (43%), Gaps = 10/264 (3%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           +  +I   C   +V  +  + + MV+  + P   T N+++  C  + + +   ++   + 
Sbjct: 484 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMV 543

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
              +KP+  T+ ++I+   ++   D A +L  ++    + P    YN I+ G F  +   
Sbjct: 544 SVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTA 603

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYVFMALI 190
            A  +   + ++  + +  T++ ++H  C N   ++ ++ ++ L     Q+    F  +I
Sbjct: 604 AAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMI 663

Query: 191 NAYTTCGEFEKARQVV----LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA 246
            A   CG  ++A+ +      +  +P        S +   L   G   +   ++  ++E 
Sbjct: 664 GALLKCGRMDEAKDLFAAHSANGLVP---DVRTYSLMAENLIEQGSLEELDDLFLSMEEN 720

Query: 247 GCNLEPRAVIALIEHLNSEGELNR 270
           GC+ + R + +++  L   G++ R
Sbjct: 721 GCSADSRMLNSIVRKLLQRGDITR 744



 Score = 42.4 bits (98), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 55/261 (21%), Positives = 101/261 (38%), Gaps = 10/261 (3%)

Query: 1   MHAKLE------ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILH 54
           MHA L+      I P    +  LI       KV  A+ V  +M Q  L P+     +++ 
Sbjct: 360 MHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVID 419

Query: 55  ACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMP 114
              +S   +     +  +    L PN   + S+I        +D A  L+ ++ +  +  
Sbjct: 420 VLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICL 479

Query: 115 TASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYY 171
               +N+I+  + ++  V  +  +   M +  VKPD  T++ LI  C      ++  K  
Sbjct: 480 NTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLL 539

Query: 172 EQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASH 230
             + S G +     +  LIN Y      + A  +  +     V       + ++  L   
Sbjct: 540 ASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHT 599

Query: 231 GRTSDAIIVYEEIKEAGCNLE 251
            RT+ A  +Y  I ++G  LE
Sbjct: 600 RRTAAAKELYVSITKSGTQLE 620


>gi|290972315|ref|XP_002668899.1| predicted protein [Naegleria gruberi]
 gi|284082436|gb|EFC36155.1| predicted protein [Naegleria gruberi]
          Length = 455

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 97/197 (49%), Gaps = 11/197 (5%)

Query: 11  SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEES--YEFNL-VRR 67
           + SY  LI        ++ A++++ +M Q  + P + T   IL AC +S  YE  L V  
Sbjct: 237 TTSYNCLIQSYIGKSDLNRAIEMLAEMQQQNISPDSATFTIILTACADSKNYEQGLKVLS 296

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +   I H  ++       +MI+   K + FD A  L + + +  +  T+  YN ++  Y 
Sbjct: 297 LKNKIKHITIR----MLNAMINFYNKCEKFDKAIELFESVTKDRVDTTS--YNCVIQSYI 350

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQIT--KYV 185
            K D+ GA+ +L EM+  N+ PDS T + ++  C++ ++  +  + L   G   T   + 
Sbjct: 351 GKGDLNGAIEILAEMQHLNISPDSATLTIILTACADSKNYEQGLKVLNIIGENKTSNNHS 410

Query: 186 FMALINAYTTCGEFEKA 202
             ++IN Y  C +F+KA
Sbjct: 411 ITSMINFYNKCEKFDKA 427



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 95/200 (47%), Gaps = 22/200 (11%)

Query: 71  MIC---HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           MIC    H+   N     +M++   K +D+D A  +  ++    L  T+  YN ++  Y 
Sbjct: 191 MICSMIEHSKTTNKVLLTTMVNFYNKCEDYDKAIEITRNVSSDGLDTTS--YNCLIQSYI 248

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQ------LKSAGGQI 181
            K D+  A+ +L EM+Q N+ PDS TF+ ++  C++     K YEQ      LK+    I
Sbjct: 249 GKSDLNRAIEMLAEMQQQNISPDSATFTIILTACADS----KNYEQGLKVLSLKNKIKHI 304

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIV 239
           T  +  A+IN Y  C +F+KA ++    E   K R +  S   ++ +    G  + AI +
Sbjct: 305 TIRMLNAMINFYNKCEKFDKAIELF---ESVTKDRVDTTSYNCVIQSYIGKGDLNGAIEI 361

Query: 240 YEEIKEAGCNLEPRAVIALI 259
             E++    N+ P +    I
Sbjct: 362 LAEMQH--LNISPDSATLTI 379


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 92/447 (20%), Positives = 182/447 (40%), Gaps = 36/447 (8%)

Query: 29  VALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
           V + + +QM    L P+  T++  ++   +    +L   +   +    L+P   TF ++I
Sbjct: 111 VVISLSKQMELVGLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLI 170

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
           +   K+ +F  A  L DD+      P    YN I+ G  +  +   A  +LK+ME+A  +
Sbjct: 171 NGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQ 230

Query: 149 PDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           P+  T+S LI +   +    + +  +  +K+ G     + + +LI        +++A  +
Sbjct: 231 PNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASAL 290

Query: 206 VLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHL 262
           + +   + +       + LV      G+ S+A+ V + + E G  +EP  V   +L+   
Sbjct: 291 LNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMG--VEPNVVTYSSLMYGY 348

Query: 263 N---SEGELNRLIQLL------EEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKD 313
           +      E  +L  ++        +   +  ++G C+        K++  A  L  ++  
Sbjct: 349 SLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKA-------KRIDEAMQLFNEMIH 401

Query: 314 KFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVN 373
           +               FCQ+       ++   DL + +     LP        L G C  
Sbjct: 402 QGLTPNNVSYNTLIHGFCQLG-----KLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQ 456

Query: 374 ARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDD--PHVRF 431
              L +A  +++  ++  L  N++ Y  +  A   SGN K A KL S++      PHV+ 
Sbjct: 457 GY-LGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQL 515

Query: 432 ---VIQA-CKQTYTIPSLQKERGFEKD 454
              +I   CK+     +L+  R  E D
Sbjct: 516 YTTIINGLCKEGLLDEALEAFRNMEAD 542



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/286 (19%), Positives = 126/286 (44%), Gaps = 4/286 (1%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           L I P   ++  L+   C   KV  AL V++ M +  + P+  T +S+++      +   
Sbjct: 297 LNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVE 356

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
            R+++ ++     KPN  ++  +I+   K K  D A  L +++    L P    YN ++ 
Sbjct: 357 ARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIH 416

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK- 183
           G+ +   ++ A  + + M      PD  T+S L+     +  + K +   ++      K 
Sbjct: 417 GFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKP 476

Query: 184 --YVFMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVY 240
              ++  L++A    G  + AR++  +  +  ++   ++ + +++ L   G   +A+  +
Sbjct: 477 NLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAF 536

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
             ++  GC  +  +   +I  L    + +R + L+ E+ D  +  D
Sbjct: 537 RNMEADGCPPDEISYNVIIRGLLQHKDESRALLLVGEMRDRGFIAD 582



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 95/200 (47%), Gaps = 3/200 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  +I   C + +   A  ++++M +    P+  T ++++ +       N    I
Sbjct: 196 PDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDI 255

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    + P+  T+ S+I    K   +  A +LL+++  +N+MP    +N ++  + +
Sbjct: 256 FSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCK 315

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYV 185
           +  V  AL VLK M +  V+P+  T+S L++  S   D++   K +  + + G +   + 
Sbjct: 316 EGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFS 375

Query: 186 FMALINAYTTCGEFEKARQV 205
           +  LIN Y      ++A Q+
Sbjct: 376 YNILINGYCKAKRIDEAMQL 395


>gi|125563733|gb|EAZ09113.1| hypothetical protein OsI_31378 [Oryza sativa Indica Group]
          Length = 618

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 131/302 (43%), Gaps = 21/302 (6%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSIL--HACEESYEFN 63
            I P+  +Y  +I   C+   +  A  +  +M +  + P+  T N+++  H   ++ +  
Sbjct: 203 RIDPNVVTYTTMIYALCEEDCIGDAEGLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKHA 262

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
           LV   Y  +    L PN   F ++I    K      A ++  D+    + PT  +YN+++
Sbjct: 263 LV--FYYDLLKCGLVPNDVIFTTLIDGLCKANRITEAKNIFLDMPRYEVAPTVPVYNSLI 320

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQ 180
            G FR    Q AL   +E+ +  ++PD  T S ++    +   +    ++ E ++ +G  
Sbjct: 321 HGAFRSGYAQEALAFFQEIIRKELRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIA 380

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
           +    +  LI+ Y   G  ++A       +E+ V+      S+L+   + +G    A+ +
Sbjct: 381 LNAAAYNVLIDEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAI 440

Query: 240 YEEIKEAGCNLEPRAV--IALIEHLNSEGELNRLIQLLEEVHDPDYW---------MDGC 288
           Y E+   G  +EP  V   ALI      G+++    L +E+ +   +         +DG 
Sbjct: 441 YTEMVAKG--VEPNVVTYTALIHGHAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVDGL 498

Query: 289 CR 290
           CR
Sbjct: 499 CR 500



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 111/255 (43%), Gaps = 11/255 (4%)

Query: 24  LLKVHVALDVVE---QMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPN 80
           L+K H+   V E   +M+   +VPS  T N++++AC    +      ++  +    + PN
Sbjct: 148 LVKAHMLARVWELFDEMLGRGMVPSVVTYNTLINACRHQGDVAKAWEVWDQMVARRIDPN 207

Query: 81  SETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLK 140
             T+ +MI    +      A  L  ++KE  + P    YNA+M+ +F++ +++ AL+   
Sbjct: 208 VVTYTTMIYALCEEDCIGDAEGLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKHALVFYY 267

Query: 141 EMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCG 197
           ++ +  + P+   F+ LI        I +    +  +       T  V+ +LI+     G
Sbjct: 268 DLLKCGLVPNDVIFTTLIDGLCKANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSG 327

Query: 198 EFEKAR---QVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRA 254
             ++A    Q ++  E+  +      S +V  L   G+   A    E ++++G  L   A
Sbjct: 328 YAQEALAFFQEIIRKEL--RPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAA 385

Query: 255 VIALIEHLNSEGELN 269
              LI+     G L+
Sbjct: 386 YNVLIDEYCKSGNLD 400



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 102/238 (42%), Gaps = 4/238 (1%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  + P+   +  LI   C   ++  A ++   M + E+ P+    NS++H    S    
Sbjct: 271 KCGLVPNDVIFTTLIDGLCKANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQ 330

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
                +  I    L+P+  T   ++           A   L+ +++  +   A+ YN ++
Sbjct: 331 EALAFFQEIIRKELRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLI 390

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI--HNCSNEEDI-IKYYEQLKSAGGQ 180
             Y +  ++  AL+    M +  V+P+  T+S LI  H+ + E +I +  Y ++ + G +
Sbjct: 391 DEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGVE 450

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAI 237
                + ALI+ +   G+ + A  +  +  E  + S +   S LV  L    R  DA+
Sbjct: 451 PNVVTYTALIHGHAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVDGLCRENRVQDAV 508



 Score = 46.2 bits (108), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 65/135 (48%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I  ++A+Y  LI   C    +  AL    +M +  + P+  T +S++    ++ E  +  
Sbjct: 379 IALNAAAYNVLIDEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAM 438

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            IY  +    ++PN  T+ ++I  + K  D D+A+ L  +++E  +   A   + ++ G 
Sbjct: 439 AIYTEMVAKGVEPNVVTYTALIHGHAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVDGL 498

Query: 127 FRKKDVQGALMVLKE 141
            R+  VQ A+  + E
Sbjct: 499 CRENRVQDAVRFIME 513



 Score = 45.8 bits (107), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 42/206 (20%), Positives = 85/206 (41%), Gaps = 9/206 (4%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           E+ P   +   ++   CD  ++ VA   +E M Q  +  +    N ++    +S   +  
Sbjct: 343 ELRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGNLDEA 402

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
                 +    ++PN  T+ S+I  + K  + + A ++  ++    + P    Y A++ G
Sbjct: 403 LVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGVEPNVVTYTALIHG 462

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED-------IIKYYEQLKSAG 178
           + +  D+  A  + KEME+  +  ++ T S L+     E         I++Y  Q KS  
Sbjct: 463 HAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVDGLCRENRVQDAVRFIMEYSGQKKSEK 522

Query: 179 GQ--ITKYVFMALINAYTTCGEFEKA 202
                    +M LI      G++ +A
Sbjct: 523 NPSIANSVTYMTLIYGLYIDGQYNEA 548


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 139/305 (45%), Gaps = 23/305 (7%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEF 62
           +L +   + ++  ++ + C   K   AL+++ QM +    P+  T N+++   C      
Sbjct: 147 RLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCSRGRVQ 202

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDD-LKEMNLMPTASMYNA 121
             +  +  M     + PN  T+ ++IS   K+   D A  + D+ L +  + P A MYNA
Sbjct: 203 AALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNA 262

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQ- 180
           ++ GY  +  +  AL+    M +  V     T++ L+H    +    + YE ++  GG+ 
Sbjct: 263 LIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKG 322

Query: 181 --ITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAI 237
             +  + +  LIN +   G  +KA ++  + +   V++     ++L+ AL+  G+  +  
Sbjct: 323 LALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETD 382

Query: 238 IVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHD----PD-----YWMD 286
            +++E    G  + P  V+  ALI   ++ G ++R  +++ E+      PD       M 
Sbjct: 383 KLFDEAVRRG--IRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMR 440

Query: 287 GCCRL 291
           G C L
Sbjct: 441 GLCLL 445



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/308 (21%), Positives = 126/308 (40%), Gaps = 43/308 (13%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHAC---- 56
           M  K E+ P +  Y  LI   CD  K+  AL   ++MV+  +  +  T N ++HA     
Sbjct: 247 MLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDG 306

Query: 57  --EESYE----------------FNLV-------------RRIYPMICHHNLKPNSETFR 85
              E+YE                +N++               I+  +    ++    T+ 
Sbjct: 307 RGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYT 366

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           S+I    K         L D+     + P   +YNA++  +    ++  A  ++ EME+ 
Sbjct: 367 SLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKK 426

Query: 146 NVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
            + PD  T++ L+         ++  K  +++   G Q     +  LI+ Y+  G+ + A
Sbjct: 427 RIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDA 486

Query: 203 RQVVLDAEIPVKSRSE---VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALI 259
            ++    E+  K  +      +AL+  L  +G+  DA  + +E+ E G   +    I+LI
Sbjct: 487 LRI--RNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLI 544

Query: 260 EHLNSEGE 267
           E L +E E
Sbjct: 545 EGLTTEDE 552



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/171 (21%), Positives = 73/171 (42%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P    Y  LI        +  A +++ +M +  + P   T N+++         +  R
Sbjct: 393 IRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEAR 452

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           ++   +    ++P+  T+ ++IS      D   A  + +++      PT   YNA++ G 
Sbjct: 453 KLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGL 512

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA 177
            +      A  ++KEM +  + PD  T+  LI   + E++     E+L +A
Sbjct: 513 CKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTEDERAIDDERLAAA 563


>gi|115479179|ref|NP_001063183.1| Os09g0417500 [Oryza sativa Japonica Group]
 gi|50253027|dbj|BAD29277.1| putative fertility restorer homologue A [Oryza sativa Japonica
           Group]
 gi|113631416|dbj|BAF25097.1| Os09g0417500 [Oryza sativa Japonica Group]
          Length = 618

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/302 (21%), Positives = 131/302 (43%), Gaps = 21/302 (6%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSIL--HACEESYEFN 63
            I P+  +Y  +I   C+   +  A  +  +M +  + P+  T N+++  H   ++ +  
Sbjct: 203 RIDPNVVTYTTMICALCEEDCIGDAEGLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKHA 262

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
           LV   Y  +    L PN   F ++I    +      A ++  D+    + PT  +YN+++
Sbjct: 263 LV--FYYDLLKCGLVPNDVIFTTLIDGLCQANRITEAKNIFLDMPRYEVAPTVPVYNSLI 320

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQ 180
            G FR    Q AL   +E+ +  ++PD  T S ++    +   +    ++ E ++ +G  
Sbjct: 321 HGAFRSGYAQEALAFFQEIIRKGLRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIA 380

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
           +    +  LI+ Y   G  ++A       +E+ V+      S+L+   + +G    A+ +
Sbjct: 381 LNAAAYNVLIDEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAI 440

Query: 240 YEEIKEAGCNLEPRAV--IALIEHLNSEGELNRLIQLLEEVHDPDYW---------MDGC 288
           Y E+   G  +EP  V   ALI      G+++    L +E+ +   +         +DG 
Sbjct: 441 YTEMVAKG--VEPNVVTYTALIHGHAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVDGL 498

Query: 289 CR 290
           CR
Sbjct: 499 CR 500



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 102/238 (42%), Gaps = 4/238 (1%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  + P+   +  LI   C   ++  A ++   M + E+ P+    NS++H    S    
Sbjct: 271 KCGLVPNDVIFTTLIDGLCQANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQ 330

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
                +  I    L+P+  T   ++           A   L+ +++  +   A+ YN ++
Sbjct: 331 EALAFFQEIIRKGLRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLI 390

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI--HNCSNEEDI-IKYYEQLKSAGGQ 180
             Y +  ++  AL+    M +  V+P+  T+S LI  H+ + E +I +  Y ++ + G +
Sbjct: 391 DEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGVE 450

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAI 237
                + ALI+ +   G+ + A  +  +  E  + S +   S LV  L    R  DA+
Sbjct: 451 PNVVTYTALIHGHAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVDGLCRENRVQDAV 508



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 109/255 (42%), Gaps = 11/255 (4%)

Query: 24  LLKVHVALDVVE---QMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPN 80
           L+K H+   V E   +M+   +VPS  T N++++AC    +      ++  +    + PN
Sbjct: 148 LVKAHMLARVWELFDEMLGRGMVPSVVTYNTLINACRHQGDVAKAWEVWDQMVARRIDPN 207

Query: 81  SETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLK 140
             T+ +MI    +      A  L  ++KE  + P    YNA+M+ +F++ +++ AL+   
Sbjct: 208 VVTYTTMICALCEEDCIGDAEGLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKHALVFYY 267

Query: 141 EMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCG 197
           ++ +  + P+   F+ LI        I +    +  +       T  V+ +LI+     G
Sbjct: 268 DLLKCGLVPNDVIFTTLIDGLCQANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSG 327

Query: 198 EFEKARQVVLDAEIPVKSRSE---VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRA 254
             ++A  +    EI  K         S +V  L   G+   A    E ++++G  L   A
Sbjct: 328 YAQEA--LAFFQEIIRKGLRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAA 385

Query: 255 VIALIEHLNSEGELN 269
              LI+     G L+
Sbjct: 386 YNVLIDEYCKSGNLD 400



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 42/211 (19%), Positives = 91/211 (43%), Gaps = 9/211 (4%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I  ++A+Y  LI   C    +  AL    +M +  + P+  T +S++    ++ E  +  
Sbjct: 379 IALNAAAYNVLIDEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAM 438

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            IY  +    ++PN  T+ ++I  + K  D D+A+ L  +++E  +   A   + ++ G 
Sbjct: 439 AIYTEMVAKGVEPNVVTYTALIHGHAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVDGL 498

Query: 127 FRKKDVQGALMVL------KEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSA 177
            R+  VQ A+  +      K+ E+     +S T+  LI+         +   ++  ++ +
Sbjct: 499 CRENRVQDAVRFIMEYSGQKKSEKNPSIANSVTYMTLIYGLYIDGQYNEACHFFSCMRDS 558

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLD 208
           G    ++ +  +I      G    A  +  D
Sbjct: 559 GMVPDRFTYTLVIRGLCMLGYVLNAMMLYAD 589



 Score = 45.1 bits (105), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 40/190 (21%), Positives = 79/190 (41%), Gaps = 9/190 (4%)

Query: 22  CDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNS 81
           CD  ++ VA   +E M Q  +  +    N ++    +S   +        +    ++PN 
Sbjct: 359 CDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGNLDEALVTCTRMSEVGVEPNV 418

Query: 82  ETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKE 141
            T+ S+I  + K  + + A ++  ++    + P    Y A++ G+ +  D+  A  + KE
Sbjct: 419 VTYSSLIDGHSKNGEMEIAMAIYTEMVAKGVEPNVVTYTALIHGHAKNGDMDAAFWLQKE 478

Query: 142 MEQANVKPDSQTFSYLIHNCSNEED-------IIKYYEQLKSAGGQ--ITKYVFMALINA 192
           ME+  +  ++ T S L+     E         I++Y  Q KS           +M LI  
Sbjct: 479 MEEKGIYSNAITVSVLVDGLCRENRVQDAVRFIMEYSGQKKSEKNPSIANSVTYMTLIYG 538

Query: 193 YTTCGEFEKA 202
               G++ +A
Sbjct: 539 LYIDGQYNEA 548


>gi|218188645|gb|EEC71072.1| hypothetical protein OsI_02831 [Oryza sativa Indica Group]
          Length = 800

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 122/275 (44%), Gaps = 14/275 (5%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  LI   C + +V    +++++      VP+  T NSI++   ++        +Y  +
Sbjct: 493 TYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQM 552

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
           C   + PN  T+ S I    K    D A  +L+D++   L P  + YN+++ G+ ++ ++
Sbjct: 553 CAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNM 612

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLKSAGGQITKYVFMAL 189
             AL VL  M +  + P+   ++  I    N    E+ +++YE++   G  +    +  L
Sbjct: 613 SHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTATYTTL 672

Query: 190 INAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
           I+ ++  G    A     ++V    IP        +AL   L  +G   DA  + +E+  
Sbjct: 673 IDGFSKDGNVTFALKLYSEMVAKGNIP---DHITFTALTHGLCRNGDIDDARKLLDEMNR 729

Query: 246 AGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEV 278
              ++ P  ++   LI      G+L    +L +E+
Sbjct: 730 --LDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEM 762



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 2/153 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+ + Y   IT   +L  +  AL   E+M++  +   T T  +++    +        
Sbjct: 627 LLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFAL 686

Query: 67  RIYP-MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           ++Y  M+   N+ P+  TF ++     +  D D A  LLD++  +++ P   MYN ++ G
Sbjct: 687 KLYSEMVAKGNI-PDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLING 745

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
           Y R   +Q A  +  EM +  + PD  T+  L+
Sbjct: 746 YLRNGKLQEAFRLHDEMLERKIMPDDTTYDILV 778



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 91/424 (21%), Positives = 176/424 (41%), Gaps = 55/424 (12%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHAC------EESYEFNLVRRIYPMICHHNLKP 79
           +V  ALD+ E+ ++  LVP+  T   ++  C      E++YE  L R++      H L P
Sbjct: 297 EVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYE--LCRQMR----DHGLLP 350

Query: 80  NSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVL 139
           ++  F  +I   +  K +  A SL  ++ +  + P A  YN ++    +++ ++ AL + 
Sbjct: 351 STNEFNMVIKGLLNDKLWKDAVSLFKEMADSGI-PDAFTYNILIHWLCQRRKIREALNLW 409

Query: 140 KEMEQANVKPDSQTF-----SYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYT 194
           ++M +  VKP   T+      Y ++ C +E   +K Y ++   G       +  L+  + 
Sbjct: 410 EKMNETGVKPYIVTYHSLLLCYCVNGCMDEA--VKLYTEMPGKGFTPNVVTYTTLMKGHI 467

Query: 195 TCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPR 253
               F+KA  ++ +  +  V       + L++ L   GR  +   + +  +  G    P 
Sbjct: 468 NKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEG--FVPT 525

Query: 254 AVI--ALIEHLNSEGELNRLI----QLLEEVHDPDY-----WMDGCCRLILHCVRFKQLS 302
           A+   ++I      G +        Q+  +   P+      ++DG C+           +
Sbjct: 526 AMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCK-----------T 574

Query: 303 SATDL-LKQLKD---KFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLP 358
           S  DL LK L D   K    ++A        FCQ        +Q+   L+  +KD  GL 
Sbjct: 575 SCCDLALKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNMSHA-LQV---LVLMLKD--GLL 628

Query: 359 PSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKL 418
           P+    +  +    N + ++ A   +++    G+  +  +Y  +   F   GN   A KL
Sbjct: 629 PNISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKL 688

Query: 419 LSKM 422
            S+M
Sbjct: 689 YSEM 692



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 41/199 (20%), Positives = 82/199 (41%), Gaps = 3/199 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P+  +Y   I   C      +AL ++  +    L P     NS+++   +    +   
Sbjct: 557 IPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNMSHAL 616

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           ++  ++    L PN   + S I+    +K  + A    + + +  +    + Y  ++ G+
Sbjct: 617 QVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTATYTTLIDGF 676

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITK 183
            +  +V  AL +  EM      PD  TF+ L H  C N   +D  K  +++     +   
Sbjct: 677 SKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNV 736

Query: 184 YVFMALINAYTTCGEFEKA 202
            ++  LIN Y   G+ ++A
Sbjct: 737 LMYNMLINGYLRNGKLQEA 755



 Score = 39.3 bits (90), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 78/175 (44%), Gaps = 9/175 (5%)

Query: 79  PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMV 138
           P   TF S++ + VK    + A  + D+L       +  +   +M GY  +++V+ AL +
Sbjct: 245 PWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDI 304

Query: 139 LKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKYVFMALINAYTT 195
            +E  +  + P   T++ LI  C+ E    K YE   Q++  G   +   F  +I     
Sbjct: 305 FEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLN 364

Query: 196 CGEFEKARQV---VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
              ++ A  +   + D+ IP    +   + L+  L    +  +A+ ++E++ E G
Sbjct: 365 DKLWKDAVSLFKEMADSGIP---DAFTYNILIHWLCQRRKIREALNLWEKMNETG 416


>gi|410109947|gb|AFV61053.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           salviifolia]
          Length = 431

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/277 (21%), Positives = 116/277 (41%), Gaps = 31/277 (11%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
            K  + PS+ SY  L+     L  +     +   M+   + P   T + +++   +  + 
Sbjct: 169 TKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLSKESKM 228

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           +    ++  +    L PN  TF ++I  + K    D A  +   +   +L+P    YN +
Sbjct: 229 DDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTL 288

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQIT 182
           + G  +K D++ A  ++ +M +  +KPD  T++ LI  C  E D       L SA     
Sbjct: 289 IYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGD-------LDSA----- 336

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
                           FE  ++++ +    ++    V +AL+S L   GR+ DA  +  E
Sbjct: 337 ----------------FEHRKRMIQE---NIRLDDVVYTALISGLCQEGRSVDAEKMLRE 377

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279
           +   G N +      +I     +G++ +  +LL+E+ 
Sbjct: 378 MLSVGLNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQ 414



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 87/215 (40%), Gaps = 10/215 (4%)

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
           F LV   Y  I       +   F  ++    K  D   A S+ D + +  L P+A  YN 
Sbjct: 123 FKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNT 182

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAG 178
           +M GY R   +     +   M  + V+PD  T+S LI+  S E   +D  + ++++   G
Sbjct: 183 LMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLSKESKMDDADELFDEMLVKG 242

Query: 179 GQITKYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTS 234
                  F  LI+ +   G  + A    +Q++  + +P        + L+  L   G   
Sbjct: 243 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLP---DLITYNTLIYGLCKKGDLK 299

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN 269
            A  + +++   G   +      LI+    EG+L+
Sbjct: 300 QAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGDLD 334


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 114/247 (46%), Gaps = 10/247 (4%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVR 66
           +PS  ++  LI + C    +  A+D++E+M      P++ + N +LH  C+E      ++
Sbjct: 118 SPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQ 177

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +  M+      P+  T+ +M++   K    D+A  LL+ L      P    YN ++ G 
Sbjct: 178 YLEIMV-SRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGL 236

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITK 183
            +      A+ +L EM    +KPD  T+S LI   S E   E+ IK++  ++  G +   
Sbjct: 237 SKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNA 296

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKS--RSEVK-SALVSALASHGRTSDAIIVY 240
           + + +++  +  C   +  R +   A +  K    +EV  + L+  +A+ G   +A+ + 
Sbjct: 297 FTYNSIM--FGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELL 354

Query: 241 EEIKEAG 247
            E+   G
Sbjct: 355 NELCSRG 361



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 125/283 (44%), Gaps = 14/283 (4%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNL 64
           E  P   +Y  LI  +C    V  A+ ++++M      P   T N +++  C+E      
Sbjct: 11  ECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEA 70

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
           ++ +  M  + + +PN  T   ++        +  A  LL ++      P+   +N ++ 
Sbjct: 71  IKFLNSMPSYGS-QPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILIN 129

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQI 181
              RK  +  A+ +L++M      P+S +++ L+H    E+ +   I+Y E + S G   
Sbjct: 130 FLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYP 189

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEV---KSALVSALASHGRTSDAII 238
               +  ++ A    G+ + A  V L  ++  K  S V    + ++  L+  G+T  A+ 
Sbjct: 190 DIVTYNTMLTALCKDGKVDAA--VELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVE 247

Query: 239 VYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVH 279
           +  E++  G  L+P  +   +LI  L+ EG++   I+   +V 
Sbjct: 248 LLHEMRGKG--LKPDVITYSSLIAGLSREGKVEEAIKFFHDVE 288



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 45/250 (18%), Positives = 106/250 (42%), Gaps = 6/250 (2%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  L+   C   ++  A+  +  M      P+  T N IL +   +  +    ++
Sbjct: 49  PDVVTYNVLVNGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKL 108

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +      P+  TF  +I+   +      A  +L+ +      P +  YN ++ G+ +
Sbjct: 109 LTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCK 168

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYV 185
           +K +  A+  L+ M      PD  T++ ++     +  +   ++   QL S G       
Sbjct: 169 EKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLIT 228

Query: 186 FMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +  +I+  +  G+ ++A +++ +     +K      S+L++ L+  G+  +AI  + +++
Sbjct: 229 YNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVE 288

Query: 245 EAGCNLEPRA 254
             G  ++P A
Sbjct: 289 --GFGVKPNA 296


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/286 (19%), Positives = 123/286 (43%), Gaps = 9/286 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P + +Y  LI   C L ++  A  ++++M+   + P     N +++A  +       +
Sbjct: 181 IFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAK 240

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +  ++    +KP   T+ +++     + +  +A  +   + +M + P    YN ++ G 
Sbjct: 241 NLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGL 300

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITK 183
            + K V  A+ +L+EM   N+ PD+ T++ LI        I   +    ++   G     
Sbjct: 301 CKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADV 360

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             + +L++A       +KA  + +   E  ++      +AL+  L   GR  +A  +++ 
Sbjct: 361 VTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQH 420

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC 288
           +   GC ++      +I  L  EG  +  + +  ++ D     +GC
Sbjct: 421 LLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMED-----NGC 461



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 111/264 (42%), Gaps = 22/264 (8%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS 86
           +H    VV Q  Q + V     +N +    E      L+R    MI   + +PN   + +
Sbjct: 100 LHFHDKVVAQGFQMDHVSYGTLLNGLCKIGETRCAVKLLR----MIEDRSTRPNVVMYNT 155

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           +I    K K  + AY L  ++    + P A  Y  ++ G+     + GA  +L EM   N
Sbjct: 156 IIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKN 215

Query: 147 VKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK-------YVFMALINAYTTCGEF 199
           + P    ++ LI+    E ++    ++ K+    +TK         +  L++ Y   GE 
Sbjct: 216 INPGVYIYNILINALCKEGNV----KEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEV 271

Query: 200 EKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI- 256
           + A+Q +  A + +     V S   +++ L    R  +A+ +  E+     N+ P  V  
Sbjct: 272 QNAKQ-IFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHK--NMVPDTVTY 328

Query: 257 -ALIEHLNSEGELNRLIQLLEEVH 279
            +LI+ L   G +   + L+ E+H
Sbjct: 329 NSLIDGLCKSGRITSALNLMNEMH 352



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/260 (18%), Positives = 110/260 (42%), Gaps = 13/260 (5%)

Query: 12  ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPM 71
            SY  L+   C + +   A+ ++  +      P+    N+I+    +    N    +Y  
Sbjct: 116 VSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSE 175

Query: 72  ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131
           +    + P++ T+ ++I     +     A+SLLD++   N+ P   +YN ++    ++ +
Sbjct: 176 MDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGN 235

Query: 132 VQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMA 188
           V+ A  +L  M +  +KP   T+S L+         ++  + +  +   G     Y +  
Sbjct: 236 VKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNI 295

Query: 189 LINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +IN    C   ++A    R+++    +P    +   ++L+  L   GR + A+ +  E+ 
Sbjct: 296 MINGLCKCKRVDEAMNLLREMLHKNMVP---DTVTYNSLIDGLCKSGRITSALNLMNEMH 352

Query: 245 EAGCNLEPRAVIALIEHLNS 264
             G   +P  V+     L++
Sbjct: 353 HRG---QPADVVTYTSLLDA 369



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 77/164 (46%), Gaps = 4/164 (2%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYE 61
            ++ + P+  SY  +I   C   +V  A++++ +M+   +VP T T NS++   C+    
Sbjct: 282 VQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRI 341

Query: 62  FNLVRRIYPMICHHNLKP-NSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
            + +  +  M  HH  +P +  T+ S++    K ++ D A +L   +KE  + PT   Y 
Sbjct: 342 TSALNLMNEM--HHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYT 399

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE 164
           A++ G  +   ++ A  + + +       D  T++ +I     E
Sbjct: 400 ALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKE 443


>gi|225445998|ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940
           [Vitis vinifera]
 gi|297735424|emb|CBI17864.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 96/412 (23%), Positives = 177/412 (42%), Gaps = 38/412 (9%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHAC------EESYEFNLVRRIYPMICHHNLKPNSET 83
           AL ++++M +    P   T N ++ A       EE  +F     I  MI    + PN+ T
Sbjct: 334 ALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADF-----IDTMI-RKGIMPNAIT 387

Query: 84  FRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME 143
           + ++I+   K    D A S    +KE   +P    YNAI+    +K  ++  + +L +M 
Sbjct: 388 YTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMR 447

Query: 144 QANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGE-- 198
                P+S T++ ++  C N+   + + + + ++KS G +  +  F ALI AY  CG   
Sbjct: 448 SNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQI 507

Query: 199 --FEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV- 255
              +   +++     P  +     +AL++ALA  G    A  V  ++K  G   +P    
Sbjct: 508 DVVKMYEEMIKAGFTPCVT---TYNALLNALARRGDWEAAESVILDMKSKG--FKPNETS 562

Query: 256 IALIEHLNSEGELNRLIQLLEE----VHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQL 311
            +L+ +  ++G   R I+ +EE     H    W+     L+L   + + L       ++ 
Sbjct: 563 YSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWIL-LRTLVLANFKRRALMGMERAFQEF 621

Query: 312 -KDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGA 370
            K  +K D +      S IF +    D        ++L+ I+ E GL P     + L+  
Sbjct: 622 CKHGYKPDLVLFNSMLS-IFAKNKMYDRAH-----EMLRLIR-ESGLQPDLVTYNSLMDM 674

Query: 371 CVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
                +  +   I K  + +G   +++SY  + K F   G  + A + LS+M
Sbjct: 675 YARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEM 726



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 84/177 (47%), Gaps = 3/177 (1%)

Query: 33  VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92
           + E++  G + PS   + +++ A  +      + R +   C H  KP+   F SM+S+  
Sbjct: 582 IEEEIYNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFA 641

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
           K K +D A+ +L  ++E  L P    YN++M  Y R  +      +LK ++++  KPD  
Sbjct: 642 KNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLV 701

Query: 153 TFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           +++ +I     +   ++ I+   ++  +G +     +   +  Y+  G F +  +V+
Sbjct: 702 SYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGYSGKGMFSEVEEVI 758



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/153 (20%), Positives = 69/153 (45%), Gaps = 1/153 (0%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  ++       ++   +D++  M      P++ T N++L  C        V R+
Sbjct: 418 PNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRV 477

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +     +PN +TF ++I    +         + +++ +    P  + YNA++    R
Sbjct: 478 FREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALAR 537

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC 161
           + D + A  V+ +M+    KP+  ++S L+ NC
Sbjct: 538 RGDWEAAESVILDMKSKGFKPNETSYS-LMLNC 569



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 91/239 (38%), Gaps = 38/239 (15%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P++ +Y  +I       K   AL    QM +   VP+  T N+IL    +    + + 
Sbjct: 381 IMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKK---SRLE 437

Query: 67  RIYPMIC---HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
            +  M+C    +   PNS T+ +M+++            +  ++K     P    +NA++
Sbjct: 438 EMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALI 497

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK 183
             Y R                                C ++ D++K YE++  AG     
Sbjct: 498 GAYGR--------------------------------CGSQIDVVKMYEEMIKAGFTPCV 525

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             + AL+NA    G++E A  V+LD +      +E   +L+    + G     I   EE
Sbjct: 526 TTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEE 584



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 65/369 (17%), Positives = 138/369 (37%), Gaps = 50/369 (13%)

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR-KKDVQGALMVLKEMEQANVKPDS 151
           +I  ++ A ++ + +++  L PT   YN ++  Y +  +     L +L EM    ++ D 
Sbjct: 221 RIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDE 280

Query: 152 QTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
            T S +I  C  E   ++  K++ +LKS G     + + +L+  +   G + +A  ++ +
Sbjct: 281 FTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKE 340

Query: 209 AE------------------------------IPVKSRSEVK------SALVSALASHGR 232
            E                              I    R  +       + +++A    G+
Sbjct: 341 MEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGK 400

Query: 233 TSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLI 292
              A+  + ++KE+GC        A++  L  +  L  +I +L ++       +GC    
Sbjct: 401 EDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRS-----NGCAPNS 455

Query: 293 LHCVRFKQLSSATDLLKQLKDKFKD-DEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFI 351
           +       +     + K +   F++      E +       I        QI  D+++  
Sbjct: 456 VTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQI--DVVKMY 513

Query: 352 KDEL--GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLAS 409
           ++ +  G  P     + LL A     D + A  +  + ++ G   N  SY  M   +   
Sbjct: 514 EEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKG 573

Query: 410 GNRKSASKL 418
           GN +   K+
Sbjct: 574 GNGRGIEKI 582



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/179 (17%), Positives = 80/179 (44%), Gaps = 4/179 (2%)

Query: 4   KLEITPSSASYKKLI-TYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           K  ++P+  +Y  ++  Y       +  L ++++M    L     T ++++ AC      
Sbjct: 237 KTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDEFTCSTVISACGREGLL 296

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           +  R+ +  +        + T+ S++ +  K   +  A S+L ++++ N  P    YN +
Sbjct: 297 DEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNEL 356

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAG 178
           +A Y R    +     +  M +  + P++ T++ +I+       E+  + ++ Q+K +G
Sbjct: 357 VAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESG 415


>gi|449455956|ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
 gi|449492939|ref|XP_004159147.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
          Length = 535

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 126/294 (42%), Gaps = 3/294 (1%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           +K  + P+  +   LI   C    V  A  V ++M    +VP+  T  +IL       + 
Sbjct: 184 SKFGVVPNVFTCNILIKALCKKNDVEGARKVFDEMPSMGIVPNVVTYTTILGGYVSRGDM 243

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
              +R++  +  H   P++ T+  ++   VK   F  A  ++D+++E  + P    Y  I
Sbjct: 244 IGAKRVFGELFDHGWLPDATTYTILMDGYVKQGRFTDAVKVMDEMEENGVEPNDITYGVI 303

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGG 179
           + GY +++    AL +L +M +    P+S     +I     E   ++  K +E+L     
Sbjct: 304 ILGYCKERKSGEALNLLNDMLEKKYIPNSALCCKVIDVLCGEGRVKEACKMWEKLLKKNC 363

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
                +   LI+     G   +AR++  + E    S     + L++ +   G   +A  +
Sbjct: 364 TPDNAITSTLIHWLCKEGNIWEARKLFNEFERGTISSLLTYNTLIAGMCEMGELCEAARL 423

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL 293
           ++++ E GC         LI+     G+   +I+++EE+ D    ++    LIL
Sbjct: 424 WDDMLEKGCVPNEFTYNMLIKGFLKVGKAKEVIKVVEEMLDKGCLLNESTYLIL 477



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 73/351 (20%), Positives = 133/351 (37%), Gaps = 55/351 (15%)

Query: 85  RSMISLN------VKIKDFDSAYSLLDDLK-EMNLMPTASMYNAIMAGYFRKKDVQGALM 137
           RS+ SLN      V+   F S + L    K +  ++P     N ++    +K DV+GA  
Sbjct: 154 RSVRSLNTLLNALVQNNRFSSVHLLFKYSKSKFGVVPNVFTCNILIKALCKKNDVEGARK 213

Query: 138 VLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCG 197
           V  EM    + P+  T++ ++    +  D+I      K   G++  + ++     YT   
Sbjct: 214 VFDEMPSMGIVPNVVTYTTILGGYVSRGDMI----GAKRVFGELFDHGWLPDATTYTI-- 267

Query: 198 EFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPR---- 253
                                    L+      GR +DA+ V +E++E G  +EP     
Sbjct: 268 -------------------------LMDGYVKQGRFTDAVKVMDEMEENG--VEPNDITY 300

Query: 254 --AVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQL 311
              ++   +   S   LN L  +LE+ + P+  +  CC++I       ++  A  + ++L
Sbjct: 301 GVIILGYCKERKSGEALNLLNDMLEKKYIPNSAL--CCKVIDVLCGEGRVKEACKMWEKL 358

Query: 312 KDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGAC 371
             K    + A+        C+       +  I      F + E G   S    + L+   
Sbjct: 359 LKKNCTPDNAITSTLIHWLCK-------EGNIWEARKLFNEFERGTISSLLTYNTLIAGM 411

Query: 372 VNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
               +L  A  +W +    G   N  +Y  + K FL  G  K   K++ +M
Sbjct: 412 CEMGELCEAARLWDDMLEKGCVPNEFTYNMLIKGFLKVGKAKEVIKVVEEM 462


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 114/273 (41%), Gaps = 17/273 (6%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS 86
           V  AL +  +M+Q  + P   T +S++  C         ++++  +     + N     S
Sbjct: 252 VEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSS 311

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           +I +  K  +   A+ + D +      P    + A++ GY      + AL++ + ME  N
Sbjct: 312 LIDMYCKCGEISIAHCIFDKMSS----PDVVSWTAMIMGYALHGPAREALVLFERMELGN 367

Query: 147 VKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQI----TKYVFMALINAYTTCGEFEKA 202
            KP+  TF  ++  CS+   + K ++  KS         T   F AL +     GE ++A
Sbjct: 368 AKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEA 427

Query: 203 RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV---IALI 259
              +  +++ +K  + V S L+ A   H  T    ++ EE+ +    LEPR++   + L 
Sbjct: 428 YNFI--SKMQIKPTASVWSTLLRACRVHKNT----MLAEEVAKKIMELEPRSIGSHVVLS 481

Query: 260 EHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLI 292
              ++ G  N    L E +       D  C  I
Sbjct: 482 NMYSASGRWNEAAHLRESMRKKGMKKDPACSWI 514



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 107/237 (45%), Gaps = 14/237 (5%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  L+    +  + H AL  V +M +    P + T++++L    E  +      ++   
Sbjct: 137 SWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGFA 196

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
             +    +     S+I +       D +  + D+L   + +    ++N+++AG  +   V
Sbjct: 197 FRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHI----LWNSLLAGCAQNGSV 252

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKS----AGGQITKYVFMA 188
           + AL + + M QA V+P   TFS LI  C N    +++ +QL +     G +   ++  +
Sbjct: 253 EEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLAS-LRFGKQLHAYVICGGFEDNVFISSS 311

Query: 189 LINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           LI+ Y  CGE   A  +      P V S     +A++   A HG   +A++++E ++
Sbjct: 312 LIDMYCKCGEISIAHCIFDKMSSPDVVSW----TAMIMGYALHGPAREALVLFERME 364


>gi|326522845|dbj|BAJ88468.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 776

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 68/306 (22%), Positives = 145/306 (47%), Gaps = 38/306 (12%)

Query: 29  VALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI----YPMICHHNLKPNSETF 84
           + L +   M++G ++P+  T+ S++  C    + +L +++    Y + C  NL   + T 
Sbjct: 262 LGLSLFLDMLEGGVMPNEFTLTSVMSLCGARLDMSLGKQVQAFCYKVGCEANLPVKNST- 320

Query: 85  RSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR-----KKDVQG----- 134
              + L ++  + D A  L +++   +++     +NA+++GY +     K D+       
Sbjct: 321 ---MYLYLRKGETDEAMRLFEEMDSSSII----TWNAMISGYAQIMDSAKDDLHARSRGF 373

Query: 135 -ALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKS----AGGQITKYVFMAL 189
            AL + +++ ++ +KPD  TFS ++  CS     ++  EQ+ +     G      V  AL
Sbjct: 374 QALKLFRDLVRSELKPDLFTFSSILSVCSAMM-ALEQGEQIHANTIKTGCLSDVVVNSAL 432

Query: 190 INAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
           +N Y  CG  E A +  +  E+P ++     ++++S  + HGR+ DAI ++E++  +G  
Sbjct: 433 VNMYNKCGSIECATKAFV--EMPTRT-PVTWTSMISGYSQHGRSQDAIQLFEDMVLSGAR 489

Query: 250 LEPRAVIALIEHLNSEG---ELNRLIQLLEEVHDPDYWMD--GCCRLILHCVRFKQLSSA 304
                 ++L+   +  G   E  R   ++   +  +  +D  GC  ++   VR  +L  A
Sbjct: 490 PNEITFVSLLSACSYAGLVEEAERYFDMMRNEYHIEPLVDHYGC--MVDMFVRLGRLDDA 547

Query: 305 TDLLKQ 310
              +K+
Sbjct: 548 FSFIKR 553


>gi|224093190|ref|XP_002309826.1| predicted protein [Populus trichocarpa]
 gi|222852729|gb|EEE90276.1| predicted protein [Populus trichocarpa]
          Length = 1480

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/234 (21%), Positives = 108/234 (46%), Gaps = 6/234 (2%)

Query: 9   PSSASYKKLIT--YSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           P   S+  LI        +  ++A++++ ++ +  L P T T N+++ AC  +       
Sbjct: 287 PDLVSFNTLINARLKAGAMMPNLAIELLNEVRRSGLRPDTITYNTLISACSRASNLEEAA 346

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++  +  H+ +P+  T+ +MIS+  +      A  L +DL+     P A  YN+++  +
Sbjct: 347 KVFDDMEAHHCQPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSLLYAF 406

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITK 183
            R+ +V+    + +EM +     D  T++ +IH    +   E  ++ Y  ++S+G     
Sbjct: 407 AREGNVEKVKEIWEEMVKIGFGKDEMTYNTMIHMYGKQGQNELALQLYRDMQSSGRNPDA 466

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDA 236
             +  LI++     +  +A  V+ +     VK   +  SAL+   A  G+  +A
Sbjct: 467 VTYTVLIDSLGKTNKIAEAAGVMSEMLNTGVKPTLKTYSALICGYAKAGKPVEA 520



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/287 (19%), Positives = 125/287 (43%), Gaps = 41/287 (14%)

Query: 33   VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92
            ++ +M +    P     NS+L       +F    ++Y  I    L+P+ +T+ ++I +  
Sbjct: 940  MLSEMEEAGFKPDLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIVMYC 999

Query: 93   KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS- 151
            +    +  +SL+ +++   L P    Y +++A + +++ V+ A  + +E++    K D  
Sbjct: 1000 RDHRPEEGFSLMHEMRVAGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSKGCKLDRS 1059

Query: 152  --QTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV---- 205
               T   +  N  +     + +  +K AG + T      L+ +Y + G+ ++A +V    
Sbjct: 1060 FYHTMMKIYRNSGSHSKAERLFSMMKDAGVEPTIATMHLLMVSYGSSGQPQEAEKVLSNL 1119

Query: 206  --------------VLDA-------EIPVKSRSEVK-----------SALVSALASHGRT 233
                          V+DA        I ++   ++K           +  + A +   RT
Sbjct: 1120 KETGSNLSTLPYSSVIDAYLRNGDYNIGIQKLIQMKKEGLEPDHRIWTCFIRAASLSRRT 1179

Query: 234  SDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
            S+AI++   +++AG +L  R +    E L S   L+R +++LE + D
Sbjct: 1180 SEAIVLLNALQDAGFDLPIRLLTEKPESLVS--ALDRCLEMLETLED 1224



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/235 (19%), Positives = 105/235 (44%), Gaps = 9/235 (3%)

Query: 45  STETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDF--DSAYS 102
           + +  N+++        FN V+ +  ++     KP+  +F ++I+  +K      + A  
Sbjct: 253 TVQVYNAMMGVYARRGRFNKVQELLDLMRERGCKPDLVSFNTLINARLKAGAMMPNLAIE 312

Query: 103 LLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH--- 159
           LL++++   L P    YN +++   R  +++ A  V  +ME  + +PD  T++ +I    
Sbjct: 313 LLNEVRRSGLRPDTITYNTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVYG 372

Query: 160 NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSE 218
            C       + +  L+S G       + +L+ A+   G  EK +++  +  +I       
Sbjct: 373 RCGLSGKAEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEM 432

Query: 219 VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQ 273
             + ++      G+   A+ +Y +++ +G N +      LI+ L   G+ N++ +
Sbjct: 433 TYNTMIHMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSL---GKTNKIAE 484



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 46/228 (20%), Positives = 91/228 (39%), Gaps = 8/228 (3%)

Query: 30   ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
            A  +   M++    P+ +TIN +L A       + +  +   +     K +  +   M+ 
Sbjct: 832  ARAIFNTMMRDGPSPTVDTINGLLQALIVDGRLDELYVVVQELQDMGFKISKSSILLMLD 891

Query: 90   LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
               +  +      +   +K     PT  +Y  +     R K V+    +L EME+A  KP
Sbjct: 892  AFARAGNIFEVKKIYHGMKAAGYFPTMHLYRVMARLLSRGKQVRDVEAMLSEMEEAGFKP 951

Query: 150  DSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
            D   ++ ++      ED    I+ Y+++K  G +  +  +  LI  Y  C +        
Sbjct: 952  DLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIVMY--CRDHRPEEGFS 1009

Query: 207  LDAEIPVKS---RSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLE 251
            L  E+ V     + +   +LV++         A  ++EE++  GC L+
Sbjct: 1010 LMHEMRVAGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSKGCKLD 1057



 Score = 38.5 bits (88), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 48/257 (18%), Positives = 98/257 (38%), Gaps = 40/257 (15%)

Query: 17  LITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHN 76
           L+   C   ++  AL       +     S     S++  C E+       +++  +    
Sbjct: 678 LVVMLCKAQQLDAALKEYSNNRELGFTGSFTMFESLIQCCLENELITEASQVFSDMRFCG 737

Query: 77  LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMN-LMPTASMYNAIMAGYFRKKDVQGA 135
           +K +   + SM+ L  K+   ++A+ L+D  +    L+   S+Y  ++  Y R K  Q A
Sbjct: 738 IKASESLYESMVLLYCKMGFPETAHHLIDFAESDGILLNNISLYVNVIEAYGRLKLWQKA 797

Query: 136 LMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTT 195
             V   + Q  +  D                                + V+ ALI AY  
Sbjct: 798 ESVAGNLRQRCITVD--------------------------------RKVWNALIEAYAA 825

Query: 196 CGEFEKARQV----VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLE 251
            G +E+AR +    + D   P     +  + L+ AL   GR  +  +V +E+++ G  + 
Sbjct: 826 SGCYERARAIFNTMMRDGPSPT---VDTINGLLQALIVDGRLDELYVVVQELQDMGFKIS 882

Query: 252 PRAVIALIEHLNSEGEL 268
             +++ +++     G +
Sbjct: 883 KSSILLMLDAFARAGNI 899


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 87/432 (20%), Positives = 176/432 (40%), Gaps = 27/432 (6%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           AK    P+S  Y+ LI   C+  +V  AL ++E M      P  +T N ++H    +   
Sbjct: 232 AKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRI 291

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           +   ++   +       ++ T+  ++    ++   D A +LL+ +      P   +YN +
Sbjct: 292 HEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIPN----PNTVLYNTL 347

Query: 123 MAGYFRKKDVQGAL-MVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGG-- 179
           ++GY      + A  ++   M  A  +PD+ TF+ +I     +  ++   E L       
Sbjct: 348 ISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKR 407

Query: 180 -QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAI 237
            +     +  LIN +   G  E+A ++V        S + V  + L+ AL   G   +A+
Sbjct: 408 FEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEAL 467

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVR 297
            ++ E+   GC  +     +LI  L    ++   + L       D +++G   +I + V 
Sbjct: 468 QLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYH-----DMFLEG---VIANTVT 519

Query: 298 FKQLSSATDLLKQLKDKFK-DDEMAM------EYHFSEIFCQIATTDPPDVQIGLDLLQF 350
           +  L  A  +   ++  FK  DEM           ++ +   +  T    V+ GL L + 
Sbjct: 520 YNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGA--VEKGLGLFEE 577

Query: 351 IKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASG 410
           +  +   P    C   + G C   + +  A    ++  + GL  ++++Y  +       G
Sbjct: 578 MLGKGIFPTIISCNILISGLCRTGK-VNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMG 636

Query: 411 NRKSASKLLSKM 422
           + + AS L +K+
Sbjct: 637 HVQEASNLFNKL 648



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 94/207 (45%), Gaps = 7/207 (3%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
            + P   TF  ++     + + DSA SLL D+ +   +P + +Y  ++        V  A
Sbjct: 200 GVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEA 259

Query: 136 LMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINA 192
           L +L++M     +PD QTF+ +IH       I    K  +++   G       +  L++ 
Sbjct: 260 LQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHG 319

Query: 193 YTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAI-IVYEEIKEAGCNLE 251
               G+ ++AR ++   +IP    + + + L+S   + GR  +A  ++Y  +  AG   +
Sbjct: 320 LCRMGQVDEARALL--NKIP-NPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPD 376

Query: 252 PRAVIALIEHLNSEGELNRLIQLLEEV 278
                 +I+ L  +G L   ++LL E+
Sbjct: 377 AYTFNIMIDGLVKKGYLVSALELLNEM 403



 Score = 45.4 bits (106), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 111/281 (39%), Gaps = 8/281 (2%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  LI   C   ++  A ++V  M    L  +T   N ++ A  +        ++
Sbjct: 410 PNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQL 469

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +     KP+  TF S+I+   K    + A SL  D+    ++     YN ++  +  
Sbjct: 470 FGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLM 529

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYV 185
           +  +Q A  ++ EM       D+ T++ LI         E  +  +E++   G   T   
Sbjct: 530 RDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIIS 589

Query: 186 FMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
              LI+     G+   A + + D     +       ++L++ L   G   +A  ++ +++
Sbjct: 590 CNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQ 649

Query: 245 EAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDY 283
             G  + P A+    LI     EG  N    LL +  D  +
Sbjct: 650 SEG--IRPDAITYNTLISRHCHEGMFNDACLLLYKGVDSGF 688



 Score = 38.9 bits (89), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 1/129 (0%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P+  S   LI+  C   KV+ AL  ++ M+   L P   T NS+++   +        
Sbjct: 583 IFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEAS 642

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +    ++P++ T+ ++IS +     F+ A  LL    +   +P    + +I+  Y
Sbjct: 643 NLFNKLQSEGIRPDAITYNTLISRHCHEGMFNDACLLLYKGVDSGFIPNEVTW-SILINY 701

Query: 127 FRKKDVQGA 135
             KK   GA
Sbjct: 702 IVKKIPWGA 710


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 98/199 (49%), Gaps = 3/199 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  LI   C+  KV+ A  + +QMV   L P+  T N++L+   ++       
Sbjct: 267 VKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAG 326

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +    + PN  T+  +I    K ++ + A++L   +    + P  S YN ++AG 
Sbjct: 327 ELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGL 386

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITK 183
            RK D++ A  ++ EM+  ++K D  T++ LI +  N+ ++   ++  +++   G + ++
Sbjct: 387 CRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQ 446

Query: 184 YVFMALINAYTTCGEFEKA 202
             +  +I+ Y   G    A
Sbjct: 447 LTYNTMIDGYCKEGNLRAA 465



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/282 (20%), Positives = 124/282 (43%), Gaps = 11/282 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKV---HVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           ++ +  +Y  LI   C + K+   + A  ++++M    + P+  T N ++    +    +
Sbjct: 194 VSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVS 253

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              +++  +    +KPN  T+ S+I+        + A +L D +    L P    +NA++
Sbjct: 254 AAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALL 313

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQ 180
            G+ + K V+ A  +  +M +  + P+  T++ LI   C +E  ED    Y  +   G  
Sbjct: 314 NGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVC 373

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIV 239
                +  LI      G+ E AR +V + +   +K+     + L+ +L + G    A+ +
Sbjct: 374 PDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRL 433

Query: 240 YEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVH 279
            +E+   G  L+P  +    +I+    EG L   + L  ++ 
Sbjct: 434 LDEMCRKG--LKPSQLTYNTMIDGYCKEGNLRAALNLRSQME 473



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 79/416 (18%), Positives = 171/416 (41%), Gaps = 33/416 (7%)

Query: 25  LKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETF 84
           L+  +  +  ++     L  S  + N ++    +  E   +  +Y  +    ++P   +F
Sbjct: 107 LRTRLGFEAFKRASDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISF 166

Query: 85  RSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ---GALMVLKE 141
             +I+   K+   + A  +++D+K   +      YN ++ GY +   +     A  +LKE
Sbjct: 167 NIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKE 226

Query: 142 MEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGE 198
           M    + P+  TF+ LI     ++++   +K + ++   G +     + +LIN     G+
Sbjct: 227 MRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGK 286

Query: 199 FEKA---RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255
             +A   R  ++++   +K      +AL++    +     A  +++++ + G        
Sbjct: 287 VNEATALRDQMVNS--CLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTY 344

Query: 256 IALI------EHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLK 309
             LI      E++     L R+  +L +   PD     C  LI    R   L +A +L+ 
Sbjct: 345 NILIDAYCKDENMEDAFALYRI--MLGKGVCPDVSTYNC--LIAGLCRKGDLEAARNLVS 400

Query: 310 QLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDEL---GLPPSRKCLDF 366
           ++  K    ++       +  C     +  +++  L LL    DE+   GL PS+   + 
Sbjct: 401 EMDTKHLKADLITYNILIDSLC-----NKGEMKKALRLL----DEMCRKGLKPSQLTYNT 451

Query: 367 LLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           ++       +L+ A  +  + E  G   NV +Y  + K F      + A+ LL++M
Sbjct: 452 MIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEM 507



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 67/155 (43%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  ITP+  +Y  LI   C    +  A  +   M+   + P   T N ++       +  
Sbjct: 334 KQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLE 393

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             R +   +   +LK +  T+  +I       +   A  LLD++    L P+   YN ++
Sbjct: 394 AARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMI 453

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            GY ++ +++ AL +  +ME+     +  T++ LI
Sbjct: 454 DGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLI 488


>gi|428186270|gb|EKX55120.1| hypothetical protein GUITHDRAFT_53115, partial [Guillardia theta
           CCMP2712]
          Length = 363

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 127/284 (44%), Gaps = 11/284 (3%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           A   + P + ++   I+      +   A+++  +M    + P+  T  +++ ACE+  + 
Sbjct: 55  AARSLRPDTVTFSTAISACAKGGEWQRAMNMYHEMEAQGIEPNEFTFAALITACEKGGQV 114

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           +    ++  +    +  N  TF + IS   K+ D+  A  LL+++    + P    Y+A 
Sbjct: 115 SKAFEVFERMQARGIVGNVYTFTAAISSCEKLGDWQRALKLLEEMIAKGIQPNLQAYSAA 174

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGG 179
           ++   +  + + AL +L+ M    +KPD   +S ++  C      E   + ++++K  G 
Sbjct: 175 ISACEKAAEARPALGLLERMTNEKIKPDIIVYSAVMAACGKAGLWEPAARIFQKMKREGL 234

Query: 180 QITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAII 238
                 +  LI AY   GE+ +A +V  L  +  V+      +  ++A A  G    ++ 
Sbjct: 235 TPDVVAYSTLIQAYQRAGEWSRALEVFQLMEKAGVRPNVIAYTEAIAACAKAGEWRRSLG 294

Query: 239 VYEEIKEAGCNLEPRAVIA--LIEHLNSEGELN---RLIQLLEE 277
           + E +K     L P AV    +I  L+  G+ +    L+Q+LEE
Sbjct: 295 LLERMK--ADKLRPDAVAYNFVISALSRGGQWDAGLTLLQMLEE 336



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 67/322 (20%), Positives = 130/322 (40%), Gaps = 44/322 (13%)

Query: 42  LVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAY 101
           L P T T ++ + AC +  E+     +Y  +    ++PN  TF ++I+   K      A+
Sbjct: 59  LRPDTVTFSTAISACAKGGEWQRAMNMYHEMEAQGIEPNEFTFAALITACEKGGQVSKAF 118

Query: 102 SLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC 161
            + + ++   ++     + A ++   +  D Q AL +L+EM    ++P+ Q +S  I  C
Sbjct: 119 EVFERMQARGIVGNVYTFTAAISSCEKLGDWQRALKLLEEMIAKGIQPNLQAYSAAISAC 178

Query: 162 SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS 221
               +                         A    G  E+     +  +I       V S
Sbjct: 179 EKAAE-------------------------ARPALGLLERMTNEKIKPDII------VYS 207

Query: 222 ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNR---LIQLLEEV 278
           A+++A    G    A  +++++K  G   +  A   LI+     GE +R   + QL+E+ 
Sbjct: 208 AVMAACGKAGLWEPAARIFQKMKREGLTPDVVAYSTLIQAYQRAGEWSRALEVFQLMEKA 267

Query: 279 H-DPDYWMDGCCRLILHCVRFKQLSSATDLLKQLK-DKFKDDEMAMEYHFSEIFCQIATT 336
              P+  +      I  C +  +   +  LL+++K DK + D +A  +  S      A +
Sbjct: 268 GVRPN--VIAYTEAIAACAKAGEWRRSLGLLERMKADKLRPDAVAYNFVIS------ALS 319

Query: 337 DPPDVQIGLDLLQFIKDELGLP 358
                  GL LLQ ++++   P
Sbjct: 320 RGGQWDAGLTLLQMLEEDEAQP 341



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 148/381 (38%), Gaps = 66/381 (17%)

Query: 98  DSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALM----VLKEMEQANV-----K 148
           ++A  +L  +++  L PT   YNA M+   R    + AL     V  + E+  V     +
Sbjct: 1   EAALEVLKSIEKEGLTPTRVSYNAAMSALTRNGRWREALSMFDSVFSQTERNKVAARSLR 60

Query: 149 PDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           PD+ TFS  I  C+     +  +  Y ++++ G +  ++ F ALI   T C   EK  QV
Sbjct: 61  PDTVTFSTAISACAKGGEWQRAMNMYHEMEAQGIEPNEFTFAALI---TAC---EKGGQV 114

Query: 206 VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
                                       S A  V+E ++  G         A I      
Sbjct: 115 ----------------------------SKAFEVFERMQARGIVGNVYTFTAAISSCEKL 146

Query: 266 GELNRLIQLLEEVH----DPDYWMDGCCRLILHCVRFKQLSSATDLLKQL-KDKFKDDEM 320
           G+  R ++LLEE+      P+  +      I  C +  +   A  LL+++  +K K D +
Sbjct: 147 GDWQRALKLLEEMIAKGIQPN--LQAYSAAISACEKAAEARPALGLLERMTNEKIKPDII 204

Query: 321 AMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRA 380
              Y      C  A    P  +I     Q +K E GL P       L+ A   A +  RA
Sbjct: 205 V--YSAVMAACGKAGLWEPAARI----FQKMKRE-GLTPDVVAYSTLIQAYQRAGEWSRA 257

Query: 381 HLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQACKQTY 440
             +++  E AG+  NV++Y     A   +G  + +  LL +M  D    +    A    +
Sbjct: 258 LEVFQLMEKAGVRPNVIAYTEAIAACAKAGEWRRSLGLLERMKAD----KLRPDAVAYNF 313

Query: 441 TIPSLQKERGFEKDRDTLLLH 461
            I +L   RG + D    LL 
Sbjct: 314 VISALS--RGGQWDAGLTLLQ 332



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/134 (19%), Positives = 63/134 (47%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A  + ++M +  L P     ++++ A + + E++    ++ ++    ++PN   +   I+
Sbjct: 222 AARIFQKMKREGLTPDVVAYSTLIQAYQRAGEWSRALEVFQLMEKAGVRPNVIAYTEAIA 281

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              K  ++  +  LL+ +K   L P A  YN +++   R       L +L+ +E+   +P
Sbjct: 282 ACAKAGEWRRSLGLLERMKADKLRPDAVAYNFVISALSRGGQWDAGLTLLQMLEEDEAQP 341

Query: 150 DSQTFSYLIHNCSN 163
           +  T+  +I  C +
Sbjct: 342 NISTYCTVIKACGD 355


>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
          Length = 987

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/275 (20%), Positives = 119/275 (43%), Gaps = 7/275 (2%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  LI       ++  A + + +M    L P+  T  SI+    +         ++ ++
Sbjct: 425 AYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLM 484

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
            H    PN+ T+ S+I   ++ K    A +L+  ++E  + P    Y  ++ G  +K + 
Sbjct: 485 EHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEF 544

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINA 192
             A  + + MEQ  + PD Q ++ L           + Y  L   G  +TK  + +L++ 
Sbjct: 545 DNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVRKGVVLTKVTYTSLVDG 604

Query: 193 YTTCGEFEKARQVVLDAEIPVKSRSEV--KSALVSALASHGRTSDAIIVYEEIKEAGCNL 250
           ++  G  + A  V+++  +    ++++   S L+ AL    + ++A+ + +++  +G   
Sbjct: 605 FSKAGNTDFA-AVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKC 663

Query: 251 EPRAVIALIEHLNSEGELNRLIQLLEEV----HDP 281
              A   +I  +  EG+ +    L  E+    H P
Sbjct: 664 NIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKP 698



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/227 (18%), Positives = 101/227 (44%), Gaps = 35/227 (15%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEE----SYEFNL 64
           PS+ +Y   I+  C + ++  A  ++ +M +  + P   T N  ++ C         F+ 
Sbjct: 698 PSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFINGCGHMGYIDRAFST 757

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIK----------------DFDSAYSLLDDLK 108
           ++R+    C    +PN  T+  ++   +K+                 + +  + LL+ + 
Sbjct: 758 LKRMVDASC----EPNCWTYWLLLKHFLKMSLINAHYVDTSGMWNWIELNMVWQLLERMM 813

Query: 109 EMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII 168
           +  L PT   Y++I+AG+ +   ++ A ++L  M   ++ P+ + ++ LI  C +    I
Sbjct: 814 KHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCD----I 869

Query: 169 KYYEQLKSAGGQITKYVFMALINAY-----TTC--GEFEKARQVVLD 208
           K + +  S    + ++ F   + +Y       C  G++++A+ +  D
Sbjct: 870 KLFGKAVSFVTDMIEFGFQPQLESYHYLIVGLCDEGDYDRAKSLFCD 916



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 148/370 (40%), Gaps = 40/370 (10%)

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
           M+ H     N  T+  +I    K      A  LLD++    ++P+   YNA++ GY +  
Sbjct: 274 MMVHDGCSLNLHTYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSG 333

Query: 131 DVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEEDIIKYYEQLKSA---GGQITKYVF 186
            ++ AL +   MEQ    PD  T++ LI+  C  + D  +  E L  A   G   T   F
Sbjct: 334 RMKDALGIKALMEQNGCNPDDWTYNSLIYGLCGGKLD--EAEELLNGAIARGFTPTVITF 391

Query: 187 MALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA 246
             LIN Y       KA ++  D  + VKS + + S     L ++G   + +I    +KEA
Sbjct: 392 TNLINGYC------KAERI--DDALRVKS-NMISSNCKLDLQAYGVLINVLIKKCRLKEA 442

Query: 247 --------GCNLEPRAV--IALIEHLNSEGELNRLIQLLE----EVHDPDYWMDGCCRLI 292
                      L P  V   ++I+     G +   +++ +    E   P+ W  G   LI
Sbjct: 443 KETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYG--SLI 500

Query: 293 LHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIK 352
              ++ K+L  A  L+ ++++      +       +  C+    D         L + ++
Sbjct: 501 YGLIQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDN-----AFRLFEMME 555

Query: 353 DELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNR 412
              GL P  +  + L  A   +    RA   +      G+    ++Y  +   F  +GN 
Sbjct: 556 QN-GLTPDEQAYNVLTDALCKS---GRAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNT 611

Query: 413 KSASKLLSKM 422
             A+ L+ KM
Sbjct: 612 DFAAVLIEKM 621



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 61/281 (21%), Positives = 117/281 (41%), Gaps = 20/281 (7%)

Query: 10  SSASYKKLI--TYSC-----DLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           + A+Y KL+    SC     D+ +   A+  + ++    LV S +  N  L +       
Sbjct: 101 APANYDKLVLSMISCSGTAEDVREAVDAIQAIRRVGGKRLVLSPKCYNLALRSLLRFDMT 160

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
             + ++Y  +    L P++ T+ +MI    K      A+     L+E  +       NA+
Sbjct: 161 EYMGKLYSHLVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNAL 220

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-----CSNEEDIIKYYEQLKSA 177
           + GY R  D++ A  +L  M     + +  +++ LI       C  E  ++ +   +   
Sbjct: 221 LLGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCEARCVREALVLVF--MMVHD 278

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKS---RSEVKSALVSALASHGRTS 234
           G  +  + +  LI      G    AR  +LD E+P++         +A++      GR  
Sbjct: 279 GCSLNLHTYTLLIKGLCKEGRIHDARG-LLD-EMPLRGVVPSVWTYNAMIDGYCKSGRMK 336

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLL 275
           DA+ +   +++ GCN +     +LI  L   G+L+   +LL
Sbjct: 337 DALGIKALMEQNGCNPDDWTYNSLIYGL-CGGKLDEAEELL 376



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 65/143 (45%)

Query: 33  VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92
           ++E+MV         T + +L A  +  + N    I   +    +K N   +  +IS  +
Sbjct: 617 LIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMI 676

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
           K    D A SL +++      P+A+ Y   ++ Y +   ++ A  ++ EME+  V PD  
Sbjct: 677 KEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVV 736

Query: 153 TFSYLIHNCSNEEDIIKYYEQLK 175
           T++  I+ C +   I + +  LK
Sbjct: 737 TYNIFINGCGHMGYIDRAFSTLK 759



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 46/221 (20%), Positives = 92/221 (41%), Gaps = 16/221 (7%)

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMN---LMPTASMYNAIMAGYFRKKDVQGALMVLKEM 142
           SMIS +   +D   A   +  ++ +    L+ +   YN  +    R    +    +   +
Sbjct: 111 SMISCSGTAEDVREAVDAIQAIRRVGGKRLVLSPKCYNLALRSLLRFDMTEYMGKLYSHL 170

Query: 143 EQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINAYTTCGEF 199
            Q  + PD+ T++ +I     +  +    +Y+  L+ +G Q+  Y   AL+  Y    + 
Sbjct: 171 VQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDL 230

Query: 200 EKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
            KA  +++   +    R+E   + L+  L       +A+++   +   GC+L       L
Sbjct: 231 RKACWLLMMMPLMGCRRNEYSYTILIQGLCEARCVREALVLVFMMVHDGCSLNLHTYTLL 290

Query: 259 IEHLNSEGELNRLIQLLEEVH----DPDYW-----MDGCCR 290
           I+ L  EG ++    LL+E+      P  W     +DG C+
Sbjct: 291 IKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCK 331


>gi|302833221|ref|XP_002948174.1| hypothetical protein VOLCADRAFT_116752 [Volvox carteri f.
           nagariensis]
 gi|300266394|gb|EFJ50581.1| hypothetical protein VOLCADRAFT_116752 [Volvox carteri f.
           nagariensis]
          Length = 1001

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 91/199 (45%), Gaps = 3/199 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  L+     L +   A+ V++ M    + P   T N+++ AC    +      +
Sbjct: 212 PNVVTYNTLVDVYGKLGQWERAIHVLDVMKHEGVEPVLRTYNTLIIACNMCNQPREALAV 271

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           Y  +      PNS T+ ++IS   K      A  +  ++   N+  +   Y+++++   +
Sbjct: 272 YQRLLSDGFTPNSTTYNALISAYGKTTQLGKALEVYQEMLRQNMDRSVITYSSLISACEK 331

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYV 185
               + AL +  EM+Q    P++ T++ L+  C+     E   + +EQ+ + G       
Sbjct: 332 AGQWETALRIFNEMQQDKCVPNTVTYNSLVTACAQGGQWEKAAEVFEQMNAHGCTPDVVT 391

Query: 186 FMALINAYTTCGEFEKARQ 204
           + ALI+AY   G+++KA Q
Sbjct: 392 YTALISAYERGGQWQKALQ 410



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 75/151 (49%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           TP+S +Y  LI+      ++  AL+V ++M++  +  S  T +S++ ACE++ ++    R
Sbjct: 281 TPNSTTYNALISAYGKTTQLGKALEVYQEMLRQNMDRSVITYSSLISACEKAGQWETALR 340

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           I+  +      PN+ T+ S+++   +   ++ A  + + +      P    Y A+++ Y 
Sbjct: 341 IFNEMQQDKCVPNTVTYNSLVTACAQGGQWEKAAEVFEQMNAHGCTPDVVTYTALISAYE 400

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
           R    Q AL    +M     KPD+  ++ +I
Sbjct: 401 RGGQWQKALQAFHKMCVQGCKPDAIVYNAII 431



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/268 (20%), Positives = 117/268 (43%), Gaps = 10/268 (3%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           SY   I+       V  AL+++++M    +  +  T  ++++ C +  +  L   IY  +
Sbjct: 146 SYTATISLCIHGQDVDRALELMQEMRSRNIERNVHTYTALMNVCIKCGKLPLALDIYNSM 205

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
              N  PN  T+ +++ +  K+  ++ A  +LD +K   + P    YN ++         
Sbjct: 206 RAVNCMPNVVTYNTLVDVYGKLGQWERAIHVLDVMKHEGVEPVLRTYNTLIIACNMCNQP 265

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMAL 189
           + AL V + +      P+S T++ LI        +   ++ Y+++       +   + +L
Sbjct: 266 REALAVYQRLLSDGFTPNSTTYNALISAYGKTTQLGKALEVYQEMLRQNMDRSVITYSSL 325

Query: 190 INAYTTCGEFEKARQVV----LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
           I+A    G++E A ++      D  +P    +   ++LV+A A  G+   A  V+E++  
Sbjct: 326 ISACEKAGQWETALRIFNEMQQDKCVP---NTVTYNSLVTACAQGGQWEKAAEVFEQMNA 382

Query: 246 AGCNLEPRAVIALIEHLNSEGELNRLIQ 273
            GC  +     ALI      G+  + +Q
Sbjct: 383 HGCTPDVVTYTALISAYERGGQWQKALQ 410



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 55/260 (21%), Positives = 114/260 (43%), Gaps = 8/260 (3%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  L+       K+ +ALD+   M     +P+  T N+++    +  ++     +  ++
Sbjct: 181 TYTALMNVCIKCGKLPLALDIYNSMRAVNCMPNVVTYNTLVDVYGKLGQWERAIHVLDVM 240

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
            H  ++P   T+ ++I           A ++   L      P ++ YNA+++ Y +   +
Sbjct: 241 KHEGVEPVLRTYNTLIIACNMCNQPREALAVYQRLLSDGFTPNSTTYNALISAYGKTTQL 300

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKYVFMAL 189
             AL V +EM + N+     T+S LI  C      E  ++ + +++          + +L
Sbjct: 301 GKALEVYQEMLRQNMDRSVITYSSLISACEKAGQWETALRIFNEMQQDKCVPNTVTYNSL 360

Query: 190 INAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGC 248
           + A    G++EKA +V         +   V  +AL+SA    G+   A+  + ++   GC
Sbjct: 361 VTACAQGGQWEKAAEVFEQMNAHGCTPDVVTYTALISAYERGGQWQKALQAFHKMCVQGC 420

Query: 249 NLEPRAVI--ALIEHLNSEG 266
             +P A++  A+I+ L   G
Sbjct: 421 --KPDAIVYNAIIDTLWETG 438


>gi|296088921|emb|CBI38481.3| unnamed protein product [Vitis vinifera]
          Length = 665

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 106/232 (45%), Gaps = 18/232 (7%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P+T  +  +L  C    EF   RRI+  +      P+      ++ L+ K  D D+++ L
Sbjct: 91  PATYAL--LLQECIFKKEFKTGRRIHAQMIVVGYYPDEYLKTKLLILHAKTGDLDTSHIL 148

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163
            DDL + +L+     +NA++AGY +K   +  L +  EM Q+ + PD  TF+ +   C+ 
Sbjct: 149 FDDLSKKSLIS----WNAMIAGYVQKGLEEEGLNLYDEMRQSGLTPDQYTFASVFRACAT 204

Query: 164 ----EEDIIKYYEQLKSAGGQITKYVFM--ALINAYTTCGEFEKARQVVLDAEIPVKSRS 217
               E+    +   +KS   QI + V +  AL++ Y  C       +V   +   +    
Sbjct: 205 LATLEKGKQAHCVMIKS---QIKENVVVNSALMDMYFKCSSLYDGHRVFNKS---LNRNV 258

Query: 218 EVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN 269
              +AL+S    HGR ++ ++ + ++K  G        +A+I   +  G +N
Sbjct: 259 ITWTALISGYGQHGRVAEVLVFFSKMKTEGFRPNYVTFLAVISACSHGGLVN 310



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 40/206 (19%), Positives = 85/206 (41%), Gaps = 10/206 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
            L++ ++M Q  L P   T  S+  AC         ++ + ++    +K N     +++ 
Sbjct: 176 GLNLYDEMRQSGLTPDQYTFASVFRACATLATLEKGKQAHCVMIKSQIKENVVVNSALMD 235

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K       + + +     N++     + A+++GY +   V   L+   +M+    +P
Sbjct: 236 MYFKCSSLYDGHRVFNKSLNRNVIT----WTALISGYGQHGRVAEVLVFFSKMKTEGFRP 291

Query: 150 DSQTFSYLIHNCSNEEDIIKYYEQLKSA----GGQITKYVFMALINAYTTCGEFEKARQV 205
           +  TF  +I  CS+   + + +E   S     G Q     + A+++     G   +A + 
Sbjct: 292 NYVTFLAVISACSHGGLVNEGWEYFMSMTRDYGIQPRGQHYAAMVDLLGRAGRLHEAFEF 351

Query: 206 VLDAEIPVKSRSEVKSALVSALASHG 231
           V ++  P    S +  AL+ A   HG
Sbjct: 352 VQNS--PCGEHSVIWGALLGACRVHG 375


>gi|356565780|ref|XP_003551115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g25630-like [Glycine max]
          Length = 622

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 125/270 (46%), Gaps = 17/270 (6%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           K   A+ + + +++G   PS  T  ++L+A      F  +  I  ++    +KP+S  F 
Sbjct: 145 KPQEAIVIFQNLIEGGHQPSLATYTTLLNALTTQKYFKPIHSIVSLVEEKQMKPDSRFFN 204

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY--FRKKDVQGALMVLKEME 143
           ++++   +  + + A  ++  +KE  L P+A  YN ++ GY    K D    L+ L  +E
Sbjct: 205 ALVNAFAEFGNIEDAKKVVQKMKESGLKPSACTYNTLIKGYGIAGKPDESIKLLDLMSIE 264

Query: 144 QANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKYVFMALINAYTTCGEFE 200
             NVKP+ +T + LI      E   + +    ++ ++G Q     F  +  +Y   G+  
Sbjct: 265 -GNVKPNLKTCNMLIRALCKMEHTSEAWNVVYKMTTSGMQPDVVSFNTVAISYAQNGKTV 323

Query: 201 KARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--- 256
           +   ++L+     +K      + ++S     G+  +A+     IK+ G  L+P  +I   
Sbjct: 324 QVEAMILEMRRNGLKPNDRTCTIIISGYCREGKVREALRFVYRIKDLG--LQPNLIILNS 381

Query: 257 ---ALIEHLNSEGELNRLIQLLEEVH-DPD 282
                ++ ++ +G +N ++ L+EE +  PD
Sbjct: 382 LVNGFVDTMDRDG-VNEVLNLMEEFYIRPD 410



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/281 (19%), Positives = 122/281 (43%), Gaps = 17/281 (6%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA------CEES 59
           ++ P S  +  L+    +   +  A  VV++M +  L PS  T N+++         +ES
Sbjct: 195 QMKPDSRFFNALVNAFAEFGNIEDAKKVVQKMKESGLKPSACTYNTLIKGYGIAGKPDES 254

Query: 60  YEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMY 119
                ++ +  M    N+KPN +T   +I    K++    A++++  +    + P    +
Sbjct: 255 -----IKLLDLMSIEGNVKPNLKTCNMLIRALCKMEHTSEAWNVVYKMTTSGMQPDVVSF 309

Query: 120 NAIMAGYFRK-KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLK 175
           N +   Y +  K VQ   M+L EM +  +KP+ +T + +I     E  +   +++  ++K
Sbjct: 310 NTVAISYAQNGKTVQVEAMIL-EMRRNGLKPNDRTCTIIISGYCREGKVREALRFVYRIK 368

Query: 176 SAGGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTS 234
             G Q    +  +L+N +    + +   +V+ L  E  ++      S +++A +  G   
Sbjct: 369 DLGLQPNLIILNSLVNGFVDTMDRDGVNEVLNLMEEFYIRPDVITYSTIMNAWSQAGFLE 428

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLL 275
               +Y  + ++G   +  A   L +      E+ +  +LL
Sbjct: 429 KCKEIYNNMLKSGVKPDGHAYSILAKGYVRAQEMEKAEELL 469



 Score = 46.2 bits (108), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 30/154 (19%), Positives = 68/154 (44%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           L + P+      L+    D +      +V+  M +  + P   T ++I++A  ++     
Sbjct: 370 LGLQPNLIILNSLVNGFVDTMDRDGVNEVLNLMEEFYIRPDVITYSTIMNAWSQAGFLEK 429

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
            + IY  +    +KP+   +  +    V+ ++ + A  LL  + +  + P   ++  +M+
Sbjct: 430 CKEIYNNMLKSGVKPDGHAYSILAKGYVRAQEMEKAEELLTVMTKSGVQPNVVIFTTVMS 489

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
           G+     +  A+ V  +M +  V P+ +TF  LI
Sbjct: 490 GWCSVGRMDNAMRVFDKMGEFGVSPNLKTFETLI 523



 Score = 42.0 bits (97), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 72/356 (20%), Positives = 151/356 (42%), Gaps = 21/356 (5%)

Query: 90  LNVKIKDF--DSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANV 147
           +N+ IK      A  +  +L E    P+ + Y  ++     +K  +    ++  +E+  +
Sbjct: 137 MNILIKSGKPQEAIVIFQNLIEGGHQPSLATYTTLLNALTTQKYFKPIHSIVSLVEEKQM 196

Query: 148 KPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204
           KPDS+ F+ L++      N ED  K  +++K +G + +   +  LI  Y   G+ +++ +
Sbjct: 197 KPDSRFFNALVNAFAEFGNIEDAKKVVQKMKESGLKPSACTYNTLIKGYGIAGKPDESIK 256

Query: 205 V--VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV---IALI 259
           +  ++  E  VK   +  + L+ AL     TS+A  V  ++  +G  ++P  V      I
Sbjct: 257 LLDLMSIEGNVKPNLKTCNMLIRALCKMEHTSEAWNVVYKMTTSG--MQPDVVSFNTVAI 314

Query: 260 EHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL--HCVRFKQLSSATDLLKQLKDKFKD 317
            +  +   +     +LE   +     D  C +I+  +C R  ++  A   + ++KD    
Sbjct: 315 SYAQNGKTVQVEAMILEMRRNGLKPNDRTCTIIISGYC-REGKVREALRFVYRIKDLGLQ 373

Query: 318 DEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDL 377
             + +       F  + T D   V   L+L+    +E  + P       ++ A   A  L
Sbjct: 374 PNLIILNSLVNGF--VDTMDRDGVNEVLNLM----EEFYIRPDVITYSTIMNAWSQAGFL 427

Query: 378 KRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVI 433
           ++   I+     +G+  +  +Y  + K ++ +   + A +LL+ M K       VI
Sbjct: 428 EKCKEIYNNMLKSGVKPDGHAYSILAKGYVRAQEMEKAEELLTVMTKSGVQPNVVI 483



 Score = 41.6 bits (96), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 35/199 (17%), Positives = 93/199 (46%), Gaps = 3/199 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +   +I+  C   KV  AL  V ++    L P+   +NS+++   ++ + + V 
Sbjct: 337 LKPNDRTCTIIISGYCREGKVREALRFVYRIKDLGLQPNLIILNSLVNGFVDTMDRDGVN 396

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +  ++    ++P+  T+ ++++   +    +    + +++ +  + P    Y+ +  GY
Sbjct: 397 EVLNLMEEFYIRPDVITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDGHAYSILAKGY 456

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CS--NEEDIIKYYEQLKSAGGQITK 183
            R ++++ A  +L  M ++ V+P+   F+ ++   CS    ++ ++ ++++   G     
Sbjct: 457 VRAQEMEKAEELLTVMTKSGVQPNVVIFTTVMSGWCSVGRMDNAMRVFDKMGEFGVSPNL 516

Query: 184 YVFMALINAYTTCGEFEKA 202
             F  LI  Y    +  KA
Sbjct: 517 KTFETLIWGYAEAKQPWKA 535


>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 113/252 (44%), Gaps = 7/252 (2%)

Query: 1   MHAKLE---ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACE 57
           M+ K++   + P+  +Y  ++   C   +   A  + ++M +  +  +  T N+++    
Sbjct: 255 MYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLC 314

Query: 58  ESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTAS 117
              + N   ++   +    + PN  T+ ++I     +     A SL  DLK   L P+  
Sbjct: 315 REMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLV 374

Query: 118 MYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS---NEEDIIKYYEQL 174
            YN +++G+ +K D  GA  V+KEME+  +KP   T++ LI   +   N E  I+    +
Sbjct: 375 TYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPM 434

Query: 175 KSAGGQITKYVFMALINAYTTCGEF-EKARQVVLDAEIPVKSRSEVKSALVSALASHGRT 233
           +  G     + +  LI+ +   G+  E +R   L     ++    + + +V      G +
Sbjct: 435 EELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSS 494

Query: 234 SDAIIVYEEIKE 245
             A+ ++ E++E
Sbjct: 495 YRALRLFREMEE 506



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 75/406 (18%), Positives = 154/406 (37%), Gaps = 42/406 (10%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A  ++ Q++ G++     T +S+LH   ES       R+Y +               MI+
Sbjct: 58  AQSLLLQVISGKIQSQFFTSSSLLHYVTESETSETKSRLYEV---------------MIN 102

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
             V+ +  DS+ S  +++ +   +P ++ +N ++                 E  +  V  
Sbjct: 103 AYVQSQSLDSSISYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWRFFNE-SKIKVDL 161

Query: 150 DSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D  +F  +I  C    +I K ++   +L+  G      ++  LI+     GE EKA+ + 
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLF 221

Query: 207 LD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
            +  +  + +     + L+  L  +G       +YE+++E G          ++     +
Sbjct: 222 FEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKD 281

Query: 266 GELNRLIQLLEEVHDP---------DYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFK 316
           G      +L +E+ +          +  + G CR +       + + A  ++ Q+K    
Sbjct: 282 GRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREM-------KANEANKVMDQMKSDGI 334

Query: 317 DDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARD 376
           +  +       + FC +           L L + +K   GL PS    + L+       D
Sbjct: 335 NPNLITYNTLIDGFCGVGKLGK-----ALSLCRDLKSR-GLSPSLVTYNILVSGFCKKGD 388

Query: 377 LKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
              A  + KE E  G+  + ++Y  +   F    N + A +L S M
Sbjct: 389 TSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPM 434


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 118/248 (47%), Gaps = 44/248 (17%)

Query: 28  HVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYP-------MICHHNLKPN 80
           H AL+V  QM+    +P+  TI S+L AC     F+    I+        +   ++    
Sbjct: 345 HEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGE 404

Query: 81  SE---TFRSMISLNVKIKDFDSAYSLLDD--LKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
            E    + ++I +  K + F +A S+ DD  L+E N++     +  ++ G+ +  D   A
Sbjct: 405 DEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVV----TWTVMIGGHAQYGDSNDA 460

Query: 136 LMVLKEM--EQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYV-------- 185
           L +  EM  E   V P++ T S ++  C++   I          G QI  YV        
Sbjct: 461 LKLFVEMISEPYGVAPNAYTISCILMACAHLAAI--------RIGKQIHAYVLRHHQYDS 512

Query: 186 ---FMA--LINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIV 239
              F+A  LIN Y+ CG+ + AR  V D+   +  +S +  +++++    HGR S+A+ +
Sbjct: 513 SAYFVANCLINMYSKCGDVDTARH-VFDS---MSQKSAISWTSMMTGYGMHGRGSEALDI 568

Query: 240 YEEIKEAG 247
           ++++++AG
Sbjct: 569 FDKMRKAG 576



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 90/195 (46%), Gaps = 12/195 (6%)

Query: 42  LVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS--MISLNVKIKDFDS 99
           + P+  TI+ IL AC       + ++I+  +  H+   +S  F +  +I++  K  D D+
Sbjct: 474 VAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDT 533

Query: 100 AYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159
           A  + D + + + +   SM    M GY        AL +  +M +A   PD  TF  +++
Sbjct: 534 ARHVFDSMSQKSAISWTSM----MTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLY 589

Query: 160 NCSN---EEDIIKYYEQLKSAGGQITKYVFMAL-INAYTTCGEFEKARQVVLDAEIPVKS 215
            CS+    +  + Y++ + +  G   +    A  I+     G  +KA + V D  +P++ 
Sbjct: 590 ACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKD--MPMEP 647

Query: 216 RSEVKSALVSALASH 230
            + V  AL+SA   H
Sbjct: 648 TAVVWVALLSACRVH 662



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 92/195 (47%), Gaps = 22/195 (11%)

Query: 80  NSETFRSMISLNVKIK------DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
           N   F+ ++S N  +       +F +A+ L  ++++ N+      + A++AGY ++    
Sbjct: 286 NMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSH 345

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE----QLKSA--------GGQI 181
            AL V ++M  +   P+  T   ++  C++     +  E     LK+         GG+ 
Sbjct: 346 EALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGED 405

Query: 182 TK-YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIV 239
               V+ ALI+ Y+ C  F+ AR +  D  IP++ R+ V  + ++   A +G ++DA+ +
Sbjct: 406 EDLMVYNALIDMYSKCRSFKAARSIFDD--IPLEERNVVTWTVMIGGHAQYGDSNDALKL 463

Query: 240 YEEIKEAGCNLEPRA 254
           + E+      + P A
Sbjct: 464 FVEMISEPYGVAPNA 478



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 43/216 (19%), Positives = 95/216 (43%), Gaps = 23/216 (10%)

Query: 6   EITPSSASYKKLITYSCDLLKVHV-------ALDVVEQMVQGELVPSTETINSILHACEE 58
            +TPS A +  L      L++ H+       A++V  +M++        T+  +L AC E
Sbjct: 76  RVTPSPAVWWNL------LIREHIKQGRLDSAINVSCRMLRAGTRLDHFTLPHVLKACGE 129

Query: 59  SYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM 118
              +      + +IC +  + N     +++++  +    + A  + D++ +  +    S 
Sbjct: 130 LPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVIS- 188

Query: 119 YNAIMAGYFRKKDVQGALMVLKEM------EQANVKPDSQTFSYLIHNCSNEEDIIKYYE 172
           +N+I++ + +  +   AL +  +M      +  N + D  +   ++  C + + + +  E
Sbjct: 189 WNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKE 248

Query: 173 QLKSA---GGQITKYVFMALINAYTTCGEFEKARQV 205
              +A   G  +  +V  ALI+AY  CG  E A +V
Sbjct: 249 VHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKV 284



 Score = 39.3 bits (90), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 66/152 (43%), Gaps = 6/152 (3%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY-PMICHHNLKPNSETFRSMI 88
           ALD+ ++M +   VP   T   +L+AC      +     +  M   + L P +E +   I
Sbjct: 565 ALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAI 624

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
            L  +    D A+     +K+M + PTA ++ A+++      +V+ A   L ++ + N +
Sbjct: 625 DLLARFGRLDKAWK---TVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAE 681

Query: 149 PDSQ--TFSYLIHNCSNEEDIIKYYEQLKSAG 178
            D      S +       +D+ +    +K +G
Sbjct: 682 NDGSYTLISNIYATAGRWKDVARIRHLMKKSG 713


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/315 (20%), Positives = 138/315 (43%), Gaps = 7/315 (2%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  I P +A Y  +I   CD  +V  AL V  + +Q    PS  T   ++ A  +S   +
Sbjct: 195 KRGIVPHNAVYNTIIKGLCDNGRVDSAL-VHYRDMQRNCAPSVITYTILVDALCKSARIS 253

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               I   +      PN  T+ ++I+   K+ + D A  L + + E +  P    YN ++
Sbjct: 254 DASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILI 313

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY---EQLKSAGGQ 180
            GY +++  Q    +L+EM +   +P+  T++ L+ +       I  +   + +     +
Sbjct: 314 DGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCK 373

Query: 181 ITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
            + + F  +I+ +   G+ + A ++  L  +          + ++S      R  DA  +
Sbjct: 374 PSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQL 433

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD--GCCRLILHCVR 297
            E + EAGC  +     +++  L    +++   ++ E + +  Y++D   C  LI    +
Sbjct: 434 LERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCK 493

Query: 298 FKQLSSATDLLKQLK 312
            ++L  A  LL++++
Sbjct: 494 SRRLDDAEKLLREME 508



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/245 (20%), Positives = 106/245 (43%), Gaps = 4/245 (1%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           +P   +Y  LI   C   +      ++++MV+    P+  T N+++ +  +S ++     
Sbjct: 303 SPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFN 362

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +  M+   + KP+  TF  MI +  K+   D AY L   + +   +P    YN +++G  
Sbjct: 363 LAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGAC 422

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKY 184
           R   +  A  +L+ M +A   PD  T++ ++      S  ++  + YE L++ G  +   
Sbjct: 423 RANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVV 482

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEI 243
               LI+        + A +++ + E    +   V  + L+       +   ++  + E+
Sbjct: 483 TCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEM 542

Query: 244 KEAGC 248
            + GC
Sbjct: 543 LDKGC 547



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 80/361 (22%), Positives = 148/361 (40%), Gaps = 29/361 (8%)

Query: 79  PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMV 138
           P+S T+ ++I+   K +DF  AY LLD++++  ++P  ++YN I+ G      V  AL+ 
Sbjct: 165 PDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVH 224

Query: 139 LKEMEQANVKPDSQTFSYLIHN-CSNEE--DIIKYYEQLKSAGGQITKYVFMALINAYTT 195
            ++M Q N  P   T++ L+   C +    D     E +  AG       +  LIN +  
Sbjct: 225 YRDM-QRNCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCK 283

Query: 196 CGEFEKARQVVLDAEIPVKSRSE---VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP 252
            G  ++A  VVL  ++   S S      + L+       R  D   + +E+ + GC  EP
Sbjct: 284 LGNMDEA--VVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGC--EP 339

Query: 253 RAVI--ALIEHLNSEGE----LNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATD 306
             +    L++ L   G+     N    +L     P ++      +I    +  QL  A +
Sbjct: 340 NFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFN--LMIDMFCKVGQLDLAYE 397

Query: 307 LLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIK--DELGLPPSRKCL 364
           L + + D+    ++          C+    D        D  Q ++   E G PP     
Sbjct: 398 LFQLMTDRGCLPDIYTYNIMISGACRANRID--------DARQLLERMTEAGCPPDVVTY 449

Query: 365 DFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424
           + ++     A  +  A+ +++   N G   +V++   +      S     A KLL +M +
Sbjct: 450 NSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMER 509

Query: 425 D 425
           +
Sbjct: 510 N 510



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 126/320 (39%), Gaps = 46/320 (14%)

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY---EQLKS 176
           N +++ + RKK  Q A  + K        PDS T+S LI+      D  + Y   ++++ 
Sbjct: 136 NCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 195

Query: 177 AGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDA 236
            G      V+  +I      G  + A     D +          + LV AL    R SDA
Sbjct: 196 RGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRNCAPSVITYTILVDALCKSARISDA 255

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLI----QLLEEVHDPDYW-----MDG 287
            ++ E++ EAGC         LI      G ++  +    Q+LE    PD +     +DG
Sbjct: 256 SLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDG 315

Query: 288 CC---------RLILHCVR------FKQLSSATD-LLKQLK--DKFKDDEMAMEY----- 324
            C         +L+   V+      F   ++  D L+K  K  D F   +M +       
Sbjct: 316 YCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPS 375

Query: 325 HFS-----EIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKR 379
           HF+     ++FC++   D     +  +L Q + D   LP        + GAC  A  +  
Sbjct: 376 HFTFNLMIDMFCKVGQLD-----LAYELFQLMTDRGCLPDIYTYNIMISGAC-RANRIDD 429

Query: 380 AHLIWKEYENAGLPYNVLSY 399
           A  + +    AG P +V++Y
Sbjct: 430 ARQLLERMTEAGCPPDVVTY 449



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/292 (18%), Positives = 117/292 (40%), Gaps = 9/292 (3%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M  + +  PS  ++  +I   C + ++ +A ++ + M     +P   T N ++     + 
Sbjct: 366 MMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRAN 425

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
             +  R++   +      P+  T+ S++S   K    D AY + + L+           +
Sbjct: 426 RIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCS 485

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSA 177
            ++ G  + + +  A  +L+EME+    PD   ++ LIH     + + K   ++ ++   
Sbjct: 486 TLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDK 545

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDA 236
           G   T   +  +I+             ++    E  V   + V ++++  L       +A
Sbjct: 546 GCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEA 605

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC 288
             +Y+ +K+ GC         L++ L     L+  I LLE +       DGC
Sbjct: 606 YELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMES-----DGC 652



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 48/247 (19%), Positives = 97/247 (39%), Gaps = 37/247 (14%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  LI   C   ++  +L    +M+    VP+  T + ++    +S        +
Sbjct: 514 PDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCML 573

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    + P++  + S+I    K   +D AY L   +K+    PT   YN ++    +
Sbjct: 574 LKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCK 633

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC--SNEED-IIKYYEQLKSAGGQITKYV 185
              +  A+ +L+ ME     PD+ T++ +      S E D   + ++ +KS G   T ++
Sbjct: 634 VSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFM 693

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
           +                                  S L++ L +  +   A+ ++EE  E
Sbjct: 694 Y----------------------------------SLLLTKLVAEEKMDQAMEIWEEALE 719

Query: 246 AGCNLEP 252
           AG +++P
Sbjct: 720 AGADVDP 726


>gi|426197455|gb|EKV47382.1| hypothetical protein AGABI2DRAFT_192573, partial [Agaricus bisporus
           var. bisporus H97]
          Length = 507

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 4/195 (2%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M  KL + P    +  +I   C L +   AL V++ M    + PS  T   +    E+  
Sbjct: 277 MLQKLNVQPEEHHFAAIIEAFCRLRQFKEALLVLDLMTSSNITPSAGTTKPLSDHIEQDA 336

Query: 61  E-FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMY 119
           E  +   R    +     + +    R++IS  +   +F  A +  + L   NL P  S++
Sbjct: 337 ESIDATWRAIDELHKDGRRIDISAPRAVISAAISQNNFSKAIAFYEALPGFNLSPDLSIF 396

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKS 176
           N ++ G  +  D Q    +L  M+   +KP+  T+   I+ C   S+ ED   Y E++K+
Sbjct: 397 NLLLQGCVQIADRQLGDTILTNMKANKIKPNQDTYGNFINLCLTQSSYEDAFFYLEEMKA 456

Query: 177 AGGQITKYVFMALIN 191
           AG + +  V++AL++
Sbjct: 457 AGFKPSASVYIALVD 471



 Score = 45.8 bits (107), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 57/115 (49%), Gaps = 1/115 (0%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+   E +    L P     N +L  C +  +  L   I   +  + +KPN +T+ + I+
Sbjct: 377 AIAFYEALPGFNLSPDLSIFNLLLQGCVQIADRQLGDTILTNMKANKIKPNQDTYGNFIN 436

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQ 144
           L +    ++ A+  L+++K     P+AS+Y A++   F   D++  +  L+EME+
Sbjct: 437 LCLTQSSYEDAFFYLEEMKAAGFKPSASVYIALVDKCFESNDLRYQI-ALEEMEE 490



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
            ++PN   +  ++        +  A+++LDD++ + + P    +N ++    R +     
Sbjct: 71  GVQPNLVIYNCLLEAAAHGAFWLEAWAILDDMRLLGIEPNIMSFNYLLHA-VRYRHSHHV 129

Query: 136 LMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI 167
             VLK+ME   VKP+SQT + LI     E+++
Sbjct: 130 ARVLKKMEDCGVKPNSQTLNLLITRYVAEDNL 161


>gi|388513011|gb|AFK44567.1| unknown [Medicago truncatula]
          Length = 348

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 89/206 (43%), Gaps = 3/206 (1%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
            I P   ++  L+   C   K+     V   M++  ++P   T NS++       E N  
Sbjct: 142 NIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNTA 201

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           + I+  +    + P+  ++  +I+   KIK  D A +L +++   N++P    YN+++ G
Sbjct: 202 KSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDG 261

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQIT 182
             +   +  AL ++ +M    V P+  T++ +I        +   I    + K  G Q +
Sbjct: 262 LSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPS 321

Query: 183 KYVFMALINAYTTCGEFEKARQVVLD 208
            Y +  LI+     G  + AR +  D
Sbjct: 322 MYTYTILIDGLCKGGRLKDARNIFED 347



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/241 (19%), Positives = 112/241 (46%), Gaps = 4/241 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I+P+  +Y  LI+    + K+  A+D+  +++   + P   T N ++    +  +    +
Sbjct: 108 ISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGK 167

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++ M+    + P+  T+ S++     +K+ ++A S+ + + +  + P    YN ++ G+
Sbjct: 168 TVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGF 227

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITK 183
            + K V  A+ +  EM   N+ P+  T++ LI   S    I   ++  +Q+   G     
Sbjct: 228 CKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNI 287

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             + ++I+A     + +KA  ++    +  ++      + L+  L   GR  DA  ++E+
Sbjct: 288 LTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKGGRLKDARNIFED 347

Query: 243 I 243
           +
Sbjct: 348 L 348



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/285 (20%), Positives = 129/285 (45%), Gaps = 22/285 (7%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHAC----EESYEFNL 64
           P++ +   LI   C   ++H A    +++V         +  +++H      E     +L
Sbjct: 5   PNTITLNTLIKGLCLKGQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDL 64

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
           ++R+   +    ++ N+  + ++I    K K  + A+ L  ++    + P    Y+A+++
Sbjct: 65  LQRVDGKL----VQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALIS 120

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSN---EEDIIKYYEQLKSAGGQ 180
           G+F    ++ A+ +  ++   N+KPD  TF+ L+   C +   +E    +   +K   G 
Sbjct: 121 GFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQ--GI 178

Query: 181 ITKYV-FMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAII 238
           I   V + +L++ Y    E   A+ +    A+  V       + L++      +   A+ 
Sbjct: 179 IPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMN 238

Query: 239 VYEEIKEAGC-NLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHD 280
           ++ E+    C N+ P  V   +LI+ L+  G ++  +QL++++HD
Sbjct: 239 LFNEMH---CKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHD 280


>gi|255572345|ref|XP_002527111.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533534|gb|EEF35274.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 412

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 135/305 (44%), Gaps = 50/305 (16%)

Query: 2   HAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEES-- 59
           H + +I+PS +  K L  Y+  L  + VA+    Q+V     PST   N+IL A  +S  
Sbjct: 26  HFRFKISPSRS--KLLQLYALSLNNLSVAIKTFYQIV----TPSTADWNAILRALIQSTH 79

Query: 60  ------YEFNLVRRIY----------------PMICHHNLKPNSETFR-----------S 86
                 +  N++R +Y                 + C  + + +S T R           +
Sbjct: 80  PIDSFRWYRNMIRGLYKVDALTCTFVLKACARALACSESTQLHSHTVRKGFAADALLGTT 139

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           ++ L  KI + DSA  + D++    L+   + + A++ G+ +      AL + K ME   
Sbjct: 140 LLDLYAKIGNLDSAQKVFDEM----LVKVTASWTALIFGFAQGNKPSEALGLFKRMEVLG 195

Query: 147 VKPDSQTFSYLIHNCSN---EEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203
           +KPD  T    +  CS     ++  K +E +K+    +   V  ALI+ Y  CG  +KA 
Sbjct: 196 LKPDETTLLAALCACSQLGASKEGEKIHEFIKNQKLDLNVRVCNALIDMYAKCGSADKA- 254

Query: 204 QVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
            +V ++  P K+     + +V A A HG    A+ +++ + + G   + ++ +A++   N
Sbjct: 255 YLVFESLGPNKTLVNWNT-MVMAFAMHGDGVKALGLFKHMGQEGLIPDAKSYLAVLCACN 313

Query: 264 SEGEL 268
             G +
Sbjct: 314 YSGSV 318


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 118/248 (47%), Gaps = 44/248 (17%)

Query: 28  HVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYP-------MICHHNLKPN 80
           H AL+V  QM+    +P+  TI S+L AC     F+    I+        +   ++    
Sbjct: 238 HEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGE 297

Query: 81  SE---TFRSMISLNVKIKDFDSAYSLLDD--LKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
            E    + ++I +  K + F +A S+ DD  L+E N++     +  ++ G+ +  D   A
Sbjct: 298 DEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVT----WTVMIGGHAQYGDSNDA 353

Query: 136 LMVLKEM--EQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYV-------- 185
           L +  EM  E   V P++ T S ++  C++   I          G QI  YV        
Sbjct: 354 LKLFVEMISEPYGVAPNAYTISCILMACAHLAAI--------RIGKQIHAYVLRHHQYDS 405

Query: 186 ---FMA--LINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIV 239
              F+A  LIN Y+ CG+ + AR  V D+   +  +S +  +++++    HGR S+A+ +
Sbjct: 406 SAYFVANCLINMYSKCGDVDTARH-VFDS---MSQKSAISWTSMMTGYGMHGRGSEALDI 461

Query: 240 YEEIKEAG 247
           ++++++AG
Sbjct: 462 FDKMRKAG 469



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 89/195 (45%), Gaps = 12/195 (6%)

Query: 42  LVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETF--RSMISLNVKIKDFDS 99
           + P+  TI+ IL AC       + ++I+  +  H+   +S  F    +I++  K  D D+
Sbjct: 367 VAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDT 426

Query: 100 AYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159
           A  + D + + + +   SM    M GY        AL +  +M +A   PD  TF  +++
Sbjct: 427 ARHVFDSMSQKSAISWTSM----MTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLY 482

Query: 160 NCSN---EEDIIKYYEQLKSAGGQITKYVFMAL-INAYTTCGEFEKARQVVLDAEIPVKS 215
            CS+    +  + Y++ + +  G   +    A  I+     G  +KA + V D  +P++ 
Sbjct: 483 ACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKD--MPMEP 540

Query: 216 RSEVKSALVSALASH 230
            + V  AL+SA   H
Sbjct: 541 TAVVWVALLSACRVH 555



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 92/195 (47%), Gaps = 22/195 (11%)

Query: 80  NSETFRSMISLNVKI------KDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
           N   F+ ++S N  +       +F +A+ L  ++++ N+      + A++AGY ++    
Sbjct: 179 NMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSH 238

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE----QLKSA--------GGQI 181
            AL V ++M  +   P+  T   ++  C++     +  E     LK+         GG+ 
Sbjct: 239 EALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGED 298

Query: 182 TK-YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIV 239
               V+ ALI+ Y+ C  F+ AR +  D  IP++ R+ V  + ++   A +G ++DA+ +
Sbjct: 299 EDLMVYNALIDMYSKCRSFKAARSIFDD--IPLEERNVVTWTVMIGGHAQYGDSNDALKL 356

Query: 240 YEEIKEAGCNLEPRA 254
           + E+      + P A
Sbjct: 357 FVEMISEPYGVAPNA 371



 Score = 40.0 bits (92), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 44/230 (19%), Positives = 99/230 (43%), Gaps = 17/230 (7%)

Query: 48  TINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL 107
           T+  +L AC E   +      + +IC +  + N     +++++  +    + A  + D++
Sbjct: 12  TLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEI 71

Query: 108 KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM------EQANVKPDSQTFSYLIHNC 161
            +  +    S +N+I++ + +  +   AL +  +M      +  N + D  +   ++  C
Sbjct: 72  TQRGIDDVIS-WNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPAC 130

Query: 162 SNEEDIIKYYEQLKSA---GGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE 218
            + + + +  E   +A   G  +  +V  ALI+AY  CG  E A +V    E       +
Sbjct: 131 GSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEF-----KD 185

Query: 219 VKS--ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
           V S  A+V+  +  G    A  +++ +++    L+     A+I   +  G
Sbjct: 186 VVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRG 235



 Score = 39.3 bits (90), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 66/152 (43%), Gaps = 6/152 (3%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY-PMICHHNLKPNSETFRSMI 88
           ALD+ ++M +   VP   T   +L+AC      +     +  M   + L P +E +   I
Sbjct: 458 ALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAI 517

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
            L  +    D A+     +K+M + PTA ++ A+++      +V+ A   L ++ + N +
Sbjct: 518 DLLARFGRLDKAWK---TVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAE 574

Query: 149 PDSQ--TFSYLIHNCSNEEDIIKYYEQLKSAG 178
            D      S +       +D+ +    +K +G
Sbjct: 575 NDGSYTLISNIYATAGRWKDVARIRHLMKKSG 606


>gi|356495305|ref|XP_003516519.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17525,
           mitochondrial-like [Glycine max]
          Length = 618

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 128/287 (44%), Gaps = 18/287 (6%)

Query: 12  ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPM 71
            +Y  LI   C   KV V L  ++QM     +P+ +T N ++    ES   +L   ++  
Sbjct: 312 VAYNTLIKGFCGAGKVKVGLHFLKQMENKGCLPNVDTYNVLISGFSESGMLDLALDLFND 371

Query: 72  ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTA--SMYNAIMAGYFRK 129
           +    +K N  TF ++I      +  +  +S+L+ ++E         S YN+I+ G  +K
Sbjct: 372 MKTDGIKWNFVTFDTLIRGLCSEERIEDGFSILELMEESKEGSRGHISPYNSIIYGLLKK 431

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLI-HNCSNE--EDIIKYYEQLKSAGGQITKYVF 186
                +   L +M   N+ P +   S +I  +C     ED  + Y+Q+   GG  +  V+
Sbjct: 432 NGFDESAEFLTKM--GNLFPRAVDRSLMILEHCKKGAIEDAKRVYDQMIDEGGIPSILVY 489

Query: 187 MALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             L++ ++  G   +A     +++ +   P+ S     +A+++     G+   A+ + E+
Sbjct: 490 NCLVHGFSKQGNVREAVELMNEMIANNCFPIPS---TFNAVITGFCRQGKVESALKLVED 546

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYWM 285
           I   GC         LI+ L   G+L + +Q+  ++ D    PD ++
Sbjct: 547 ITARGCVPNTETYSPLIDVLCRNGDLQKAMQVFMQMVDKGILPDLFI 593



 Score = 46.2 bits (108), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 34/161 (21%), Positives = 66/161 (40%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P +     +I   C    +  A  V +QM+    +PS    N ++H   +         +
Sbjct: 449 PRAVDRSLMILEHCKKGAIEDAKRVYDQMIDEGGIPSILVYNCLVHGFSKQGNVREAVEL 508

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +  +N  P   TF ++I+   +    +SA  L++D+     +P    Y+ ++    R
Sbjct: 509 MNEMIANNCFPIPSTFNAVITGFCRQGKVESALKLVEDITARGCVPNTETYSPLIDVLCR 568

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK 169
             D+Q A+ V  +M    + PD   ++ L+ + S E    K
Sbjct: 569 NGDLQKAMQVFMQMVDKGILPDLFIWNSLLLSLSQERHFSK 609



 Score = 42.7 bits (99), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 59/284 (20%), Positives = 118/284 (41%), Gaps = 19/284 (6%)

Query: 42  LVPSTETINSILHACEESYEFNLVRRIYPMICHH-NLKPNSETFRSMISLNVKIKDFDSA 100
            V S  T  +++H       F+ V+++   + H     P  + F ++I    + +   + 
Sbjct: 65  FVHSQSTYRALIHKLCTFRRFDTVKQLLDEMPHSLGAPPGDDIFITIIRGLGRARMTRTV 124

Query: 101 YSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGAL-MVLKEMEQANVKPDSQTFSYLIH 159
             +LD + + +  P+  ++N+I+     K+D+  A     K M  + V+ D  TF  L+ 
Sbjct: 125 IKVLDLVYKFHGSPSLKIFNSILD-VLVKEDIDMAREFYRKSMMASGVEGDDYTFGILMK 183

Query: 160 NCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSR 216
                  I    K  + +KS G      V+  L++A    G+  +AR ++ + E P    
Sbjct: 184 GLCLTNRIGEGFKLLQLIKSRGVAPNTVVYNTLLHALCRNGKVGRARNLMNEMEDPNDVT 243

Query: 217 SEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276
             +   L+S     G +  A+++ E+    G   +  +V  ++E L + G      ++LE
Sbjct: 244 FNI---LISGYCKEGNSVQALVLLEKSFSMGFVPDVVSVTKVLEILCNAGRTMEAAEVLE 300

Query: 277 EVHDPDYWMDGCCRLILHCVRFKQLSSATDL------LKQLKDK 314
            V      M G   ++ +    K    A  +      LKQ+++K
Sbjct: 301 RVES----MGGLLDVVAYNTLIKGFCGAGKVKVGLHFLKQMENK 340


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 138/305 (45%), Gaps = 23/305 (7%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEF 62
           +L +   + ++  ++ + C   K   AL+++ QM +    P+  T N+++   C      
Sbjct: 107 RLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCSRGRVQ 162

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDD-LKEMNLMPTASMYNA 121
             +  +  M     + PN  T+ ++IS   K+   D A  + D+ L +  + P A MYNA
Sbjct: 163 AALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNA 222

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQI 181
           ++ GY  +  +  AL+    M +  V     T++ L+H    +    + YE ++  GG+ 
Sbjct: 223 LIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKG 282

Query: 182 TK---YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAI 237
                + +  LIN +   G  +KA ++  + +   V++     +AL+ AL+  G+  +  
Sbjct: 283 LAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETD 342

Query: 238 IVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHD----PD-----YWMD 286
            +++E    G  + P  V+  ALI   ++ G ++R  +++ E+      PD       M 
Sbjct: 343 KLFDEAVRRG--IRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMR 400

Query: 287 GCCRL 291
           G C L
Sbjct: 401 GLCLL 405



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 130/311 (41%), Gaps = 49/311 (15%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHAC---- 56
           M  K E+ P +  Y  LI   CD  K+  AL   ++MV+  +  +  T N ++HA     
Sbjct: 207 MLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDG 266

Query: 57  --EESYEF-------NLVRRIYP---MICHH----NLKPNSETFRSMISLNVK------- 93
              E+YE         L   ++    +I  H    N+K   E F +M    V+       
Sbjct: 267 RGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYT 326

Query: 94  -----------IKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM 142
                      +++ D    L D+     + P   +YNA++  +    ++  A  ++ EM
Sbjct: 327 ALIYALSKKGQVQETD---KLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEM 383

Query: 143 EQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEF 199
           E+  + PD  T++ L+         ++  K  +++   G Q     +  LI+ Y+  G+ 
Sbjct: 384 EKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDV 443

Query: 200 EKARQVVLDAEIPVKSRSE---VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI 256
           + A ++    E+  K  +      +AL+  L  +G+  DA  + +E+ E G   +    I
Sbjct: 444 KDALRI--RNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYI 501

Query: 257 ALIEHLNSEGE 267
           +LIE L +E E
Sbjct: 502 SLIEGLTTEDE 512



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/171 (21%), Positives = 73/171 (42%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P    Y  LI        +  A +++ +M +  + P   T N+++         +  R
Sbjct: 353 IRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEAR 412

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           ++   +    ++P+  T+ ++IS      D   A  + +++      PT   YNA++ G 
Sbjct: 413 KLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGL 472

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA 177
            +      A  ++KEM +  + PD  T+  LI   + E++     E+L +A
Sbjct: 473 CKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTEDERAIDDERLAAA 523


>gi|357473771|ref|XP_003607170.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508225|gb|AES89367.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1173

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 93/183 (50%), Gaps = 7/183 (3%)

Query: 30  ALDVVEQM---VQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS 86
           A DV+ +M   +Q  +VP   T  +++ AC ++ +    R +Y MI  +N+K +SE +  
Sbjct: 674 AFDVIAEMEAEIQ-PIVPDHVTFGTLMKACAKAGQVERAREVYKMIQQYNIKGSSEVYTI 732

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
            I+   +  D++ A S+ DD+ +  ++P     +A++      K ++ A  +L++  +  
Sbjct: 733 AINSCSQTGDWEFARSVYDDMTQKGVLPDEMFMSALIDVAGHAKKLEAAFDILQQARKEG 792

Query: 147 VKPDSQTFSYLIHNCS---NEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203
           V+    T+S L+  CS   N +  ++ YE LKS     T     AL+ A     +F+KA 
Sbjct: 793 VQIGIMTYSSLMGACSKAKNWQRALELYEYLKSLKLVQTVSTVNALLTALCDGDQFQKAL 852

Query: 204 QVV 206
           +V+
Sbjct: 853 EVL 855



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 74/357 (20%), Positives = 144/357 (40%), Gaps = 16/357 (4%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P+  T N ++  C  S +     ++  ++    L P+ + + ++IS   K    D  + +
Sbjct: 548 PTLSTFNMLMSVCASSQDSEGAFQVIQLLKDARLDPDCKLYTTLISTCGKCGKVDLMFEV 607

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163
              +    + P    Y A++ G  R   V  A      M   NVK D   F+ LI  C+ 
Sbjct: 608 FHKMVNSGVEPNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKADRVVFNALIAACAQ 667

Query: 164 EEDIIKYYEQLKSAGGQITKYV-----FMALINAYTTCGEFEKARQVV-LDAEIPVKSRS 217
              + + ++ +     +I   V     F  L+ A    G+ E+AR+V  +  +  +K  S
Sbjct: 668 SGAMARAFDVIAEMEAEIQPIVPDHVTFGTLMKACAKAGQVERAREVYKMIQQYNIKGSS 727

Query: 218 EVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEE 277
           EV +  +++ +  G    A  VY+++ + G   +   + ALI+      +L     +L++
Sbjct: 728 EVYTIAINSCSQTGDWEFARSVYDDMTQKGVLPDEMFMSALIDVAGHAKKLEAAFDILQQ 787

Query: 278 VHDPDYWMD--GCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQI-A 334
                  +       L+  C + K    A +L + LK       + +    S +   + A
Sbjct: 788 ARKEGVQIGIMTYSSLMGACSKAKNWQRALELYEYLK------SLKLVQTVSTVNALLTA 841

Query: 335 TTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAG 391
             D    Q  L++L  +K  LGL P+      L+ A     D++ A ++  + +  G
Sbjct: 842 LCDGDQFQKALEVLSEMKG-LGLCPNSITFSILIVASEKKDDMEAAQMLLSQAKKDG 897



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 76/359 (21%), Positives = 139/359 (38%), Gaps = 63/359 (17%)

Query: 79  PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMV 138
           P   TF  ++S+    +D + A+ ++  LK+  L P   +Y  +++   +   V     V
Sbjct: 548 PTLSTFNMLMSVCASSQDSEGAFQVIQLLKDARLDPDCKLYTTLISTCGKCGKVDLMFEV 607

Query: 139 LKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY---YEQLKSAGGQITKYVFMALINAYTT 195
             +M  + V+P+  T+  LI  C+    + K    Y  ++S   +  + VF ALI A   
Sbjct: 608 FHKMVNSGVEPNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKADRVVFNALIAACAQ 667

Query: 196 CGEFEKARQVV--LDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP 252
            G   +A  V+  ++AEI P+         L+ A A  G+   A  VY+ I++       
Sbjct: 668 SGAMARAFDVIAEMEAEIQPIVPDHVTFGTLMKACAKAGQVERAREVYKMIQQYNIKGSS 727

Query: 253 RAVIALIEHLNSEGELNRLIQLLEEVHD--------PD-YWMDGCCRLILHCVRFKQLSS 303
                 I   +  G+     +    V+D        PD  +M     +  H    K+L +
Sbjct: 728 EVYTIAINSCSQTGDW----EFARSVYDDMTQKGVLPDEMFMSALIDVAGHA---KKLEA 780

Query: 304 ATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKC 363
           A D+L+Q + +                          VQIG+                  
Sbjct: 781 AFDILQQARKE-------------------------GVQIGI----------------MT 799

Query: 364 LDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
              L+GAC  A++ +RA  +++  ++  L   V +   +  A       + A ++LS+M
Sbjct: 800 YSSLMGACSKAKNWQRALELYEYLKSLKLVQTVSTVNALLTALCDGDQFQKALEVLSEM 858



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/212 (18%), Positives = 94/212 (44%), Gaps = 5/212 (2%)

Query: 2   HAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYE 61
           + +L   P+ +++  L++          A  V++ +    L P  +   +++  C +  +
Sbjct: 541 YVRLIPNPTLSTFNMLMSVCASSQDSEGAFQVIQLLKDARLDPDCKLYTTLISTCGKCGK 600

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
            +L+  ++  + +  ++PN  T+ ++I    +      A+     ++  N+     ++NA
Sbjct: 601 VDLMFEVFHKMVNSGVEPNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKADRVVFNA 660

Query: 122 IMAGYFRKKDVQGALMVLKEMEQ--ANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKS 176
           ++A   +   +  A  V+ EME     + PD  TF  L+  C+    + +    Y+ ++ 
Sbjct: 661 LIAACAQSGAMARAFDVIAEMEAEIQPIVPDHVTFGTLMKACAKAGQVERAREVYKMIQQ 720

Query: 177 AGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
              + +  V+   IN+ +  G++E AR V  D
Sbjct: 721 YNIKGSSEVYTIAINSCSQTGDWEFARSVYDD 752



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 82/203 (40%), Gaps = 36/203 (17%)

Query: 1   MHAKLE-ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEES 59
           M A+++ I P   ++  L+       +V  A +V + + Q  +  S+E     +++C ++
Sbjct: 681 MEAEIQPIVPDHVTFGTLMKACAKAGQVERAREVYKMIQQYNIKGSSEVYTIAINSCSQT 740

Query: 60  YEFNLVRRIYPMICHHNLKPNSE-----------------------------------TF 84
            ++   R +Y  +    + P+                                     T+
Sbjct: 741 GDWEFARSVYDDMTQKGVLPDEMFMSALIDVAGHAKKLEAAFDILQQARKEGVQIGIMTY 800

Query: 85  RSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQ 144
            S++    K K++  A  L + LK + L+ T S  NA++         Q AL VL EM+ 
Sbjct: 801 SSLMGACSKAKNWQRALELYEYLKSLKLVQTVSTVNALLTALCDGDQFQKALEVLSEMKG 860

Query: 145 ANVKPDSQTFSYLIHNCSNEEDI 167
             + P+S TFS LI     ++D+
Sbjct: 861 LGLCPNSITFSILIVASEKKDDM 883



 Score = 38.9 bits (89), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 23/152 (15%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL++ E +   +LV +  T+N++L A  +  +F     +   +    L PNS TF  +I 
Sbjct: 816 ALELYEYLKSLKLVQTVSTVNALLTALCDGDQFQKALEVLSEMKGLGLCPNSITFSILIV 875

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD------------------ 131
            + K  D ++A  LL   K+    PT  M   I+    R+ +                  
Sbjct: 876 ASEKKDDMEAAQMLLSQAKKDGAAPTLIMCRCIIGMCLRRFEKACLVGETVLSFDSGRPQ 935

Query: 132 -----VQGALMVLKEMEQANVKPDSQTFSYLI 158
                   ALMV +E   A  KP SQ  S ++
Sbjct: 936 VNNEWTSLALMVYRETIGAGEKPTSQILSQVL 967


>gi|147825385|emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera]
          Length = 821

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 96/412 (23%), Positives = 177/412 (42%), Gaps = 38/412 (9%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHAC------EESYEFNLVRRIYPMICHHNLKPNSET 83
           AL ++++M +    P   T N ++ A       EE  +F     I  MI    + PN+ T
Sbjct: 334 ALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADF-----IDTMI-RKGIMPNAIT 387

Query: 84  FRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME 143
           + ++I+   K    D A S    +KE   +P    YNAI+    +K  ++  + +L +M 
Sbjct: 388 YTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMR 447

Query: 144 QANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGE-- 198
                P+S T++ ++  C N+   + + + + ++KS G +  +  F ALI AY  CG   
Sbjct: 448 SNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQI 507

Query: 199 --FEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV- 255
              +   +++     P  +     +AL++ALA  G    A  V  ++K  G   +P    
Sbjct: 508 DVVKMYEEMIKAGFTPCVT---TYNALLNALARRGDWEAAESVILDMKSKG--FKPNETS 562

Query: 256 IALIEHLNSEGELNRLIQLLEE----VHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQL 311
            +L+ +  ++G   R I+ +EE     H    W+     L+L   + + L       ++ 
Sbjct: 563 YSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWIL-LRTLVLANFKRRALMGMERAFQEF 621

Query: 312 -KDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGA 370
            K  +K D +      S IF +    D        ++L+ I+ E GL P     + L+  
Sbjct: 622 CKHGYKPDLVLFNSMLS-IFAKNKMYDRAH-----EMLRLIR-ESGLQPDLVTYNSLMDM 674

Query: 371 CVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
                +  +   I K  + +G   +++SY  + K F   G  + A + LS+M
Sbjct: 675 YARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEM 726



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 84/177 (47%), Gaps = 3/177 (1%)

Query: 33  VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92
           + E++  G + PS   + +++ A  +      + R +   C H  KP+   F SM+S+  
Sbjct: 582 IEEEIYNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFA 641

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
           K K +D A+ +L  ++E  L P    YN++M  Y R  +      +LK ++++  KPD  
Sbjct: 642 KNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLV 701

Query: 153 TFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           +++ +I     +   ++ I+   ++  +G +     +   +  Y+  G F +  +V+
Sbjct: 702 SYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGYSGKGMFSEVEEVI 758



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/153 (20%), Positives = 69/153 (45%), Gaps = 1/153 (0%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  ++       ++   +D++  M      P++ T N++L  C        V R+
Sbjct: 418 PNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRV 477

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +     +PN +TF ++I    +         + +++ +    P  + YNA++    R
Sbjct: 478 FREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALAR 537

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC 161
           + D + A  V+ +M+    KP+  ++S L+ NC
Sbjct: 538 RGDWEAAESVILDMKSKGFKPNETSYS-LMLNC 569



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 91/239 (38%), Gaps = 38/239 (15%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P++ +Y  +I       K   AL    QM +   VP+  T N+IL    +    + + 
Sbjct: 381 IMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKK---SRLE 437

Query: 67  RIYPMIC---HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
            +  M+C    +   PNS T+ +M+++            +  ++K     P    +NA++
Sbjct: 438 EMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALI 497

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK 183
             Y R                                C ++ D++K YE++  AG     
Sbjct: 498 GAYGR--------------------------------CGSQIDVVKMYEEMIKAGFTPCV 525

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             + AL+NA    G++E A  V+LD +      +E   +L+    + G     I   EE
Sbjct: 526 TTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEE 584



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 65/369 (17%), Positives = 138/369 (37%), Gaps = 50/369 (13%)

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR-KKDVQGALMVLKEMEQANVKPDS 151
           +I  ++ A ++ + +++  L PT   YN ++  Y +  +     L +L EM    ++ D 
Sbjct: 221 RIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDE 280

Query: 152 QTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
            T S +I  C  E   ++  K++ +LKS G     + + +L+  +   G + +A  ++ +
Sbjct: 281 FTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKE 340

Query: 209 AE------------------------------IPVKSRSEVK------SALVSALASHGR 232
            E                              I    R  +       + +++A    G+
Sbjct: 341 MEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGK 400

Query: 233 TSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLI 292
              A+  + ++KE+GC        A++  L  +  L  +I +L ++       +GC    
Sbjct: 401 EDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRS-----NGCAPNS 455

Query: 293 LHCVRFKQLSSATDLLKQLKDKFKD-DEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFI 351
           +       +     + K +   F++      E +       I        QI  D+++  
Sbjct: 456 VTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQI--DVVKMY 513

Query: 352 KDEL--GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLAS 409
           ++ +  G  P     + LL A     D + A  +  + ++ G   N  SY  M   +   
Sbjct: 514 EEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKG 573

Query: 410 GNRKSASKL 418
           GN +   K+
Sbjct: 574 GNGRGIEKI 582



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/179 (17%), Positives = 80/179 (44%), Gaps = 4/179 (2%)

Query: 4   KLEITPSSASYKKLI-TYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           K  ++P+  +Y  ++  Y       +  L ++++M    L     T ++++ AC      
Sbjct: 237 KTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDEFTCSTVISACGREGLL 296

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           +  R+ +  +        + T+ S++ +  K   +  A S+L ++++ N  P    YN +
Sbjct: 297 DEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNEL 356

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAG 178
           +A Y R    +     +  M +  + P++ T++ +I+       E+  + ++ Q+K +G
Sbjct: 357 VAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESG 415


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 84/394 (21%), Positives = 165/394 (41%), Gaps = 24/394 (6%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           +P++ +Y  LI+  C   +V  A ++   +    ++P   T NS++     +    +   
Sbjct: 362 SPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAME 421

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           ++  +     +P+  T+  +I         D A ++L  ++      +   YN ++ G+ 
Sbjct: 422 LFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFC 481

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKY 184
           +    + A  +  EME   V  +S T++ LI   C +   ED  +  +Q+   G +  KY
Sbjct: 482 KANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKY 541

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEE 242
            + +L+  +   G+ +KA  +V  A        ++ +   L+S L   GR   A  +   
Sbjct: 542 TYNSLLTHFCRGGDIKKAADIV-QAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRS 600

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD-----PDYWMDGCCRLILH--C 295
           I+  G NL P A   +I+ L  + +    I L  E+ +     PD       R++    C
Sbjct: 601 IQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAV---SYRIVFRGLC 657

Query: 296 VRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDP--PDVQIGLDLLQFIKD 353
                +  A D L +L +K    E +  Y  +E    ++  +     V + +   +F ++
Sbjct: 658 NGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVNMVMQKARFSEE 717

Query: 354 EL----GLPPSRKCLDFL--LGACVNARDLKRAH 381
           E+    GL   RK  D L  LG  +++R  +R +
Sbjct: 718 EVSMVKGLLKIRKFQDALATLGGVLDSRQPRRTY 751



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 79/401 (19%), Positives = 163/401 (40%), Gaps = 16/401 (3%)

Query: 31  LDVVEQMV-QGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           L VV+ M+ +  L P T   N +L+   +     LV   +  +    +KP+  TF  +I 
Sbjct: 138 LSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIK 197

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              +      A  +L+D+    L+P    +  +M GY  + D+ GAL + ++M +     
Sbjct: 198 ALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSW 257

Query: 150 DSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQIT-KYVFMALINAYTTCGEFEKARQV 205
            + + + ++H    E   ED + + +++ +  G    +Y F  L+N     G  + A + 
Sbjct: 258 SNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIE- 316

Query: 206 VLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
           ++D  +      +V +  +++S L   G   +A+ V +++    C+        LI  L 
Sbjct: 317 IMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLC 376

Query: 264 SEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQLSSATDLLKQLKDKFKDDEMA 321
            E ++    +L   +       D C    LI      +    A +L ++++ K  + +  
Sbjct: 377 KENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEF 436

Query: 322 MEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAH 381
                 +  C     D       L++L+ ++   G   S    + L+     A   + A 
Sbjct: 437 TYNMLIDSLCSKGKLDE-----ALNMLKQMELS-GCARSVITYNTLIDGFCKANKTREAE 490

Query: 382 LIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
            I+ E E  G+  N ++Y  +      S   + A++L+ +M
Sbjct: 491 EIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQM 531



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/314 (19%), Positives = 139/314 (44%), Gaps = 10/314 (3%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   ++  L+   C    V  A+++++ M+Q    P   T NS++    +  E      +
Sbjct: 293 PDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEV 352

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +   +  PN+ T+ ++IS   K    + A  L   L    ++P    +N+++ G   
Sbjct: 353 LDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCL 412

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYV 185
            ++ + A+ + +EM     +PD  T++ LI + CS    ++ +   +Q++ +G   +   
Sbjct: 413 TRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVIT 472

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIK 244
           +  LI+ +    +  +A ++  + E+   SR+ V  + L+  L    R  DA  + +++ 
Sbjct: 473 YNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMI 532

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDYWMDGCCRLILHCVRFKQ 300
             G   +     +L+ H    G++ +   +++ +     +PD    G   LI    +  +
Sbjct: 533 MEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGT--LISGLCKAGR 590

Query: 301 LSSATDLLKQLKDK 314
           +  A+ LL+ ++ K
Sbjct: 591 VEVASKLLRSIQMK 604


>gi|218199277|gb|EEC81704.1| hypothetical protein OsI_25308 [Oryza sativa Indica Group]
          Length = 749

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/245 (20%), Positives = 123/245 (50%), Gaps = 14/245 (5%)

Query: 29  VALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
           +A+    +M +  + P+  +++S+L AC    +      ++ +   H    +     +++
Sbjct: 143 LAVAAFARMARAGVSPTASSVSSVLVACVRLEDAAAGATLHSVGLMHGFCASVVVGTALV 202

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
            +  K     +A  +  +++E N+    + + A++AG+   +    A+++++EME++ V 
Sbjct: 203 DMYAKCHHLGAAQQVFREMEEKNV----ATFTALVAGFVLSRRPHDAMLLVREMERSGVA 258

Query: 149 PDSQTFSYLIHNCSNEEDIIKYYEQLKSA----GGQITKYVFMALINAYTTCGEFEKARQ 204
           P+  T+S L+ + ++ ED I + +Q+  A    G +  ++V  AL+  Y+ CG  E   +
Sbjct: 259 PNLMTYSSLLSSFASPED-IDHGKQVHCAVLKKGLEHDQFVLSALVTMYSKCGILEDFVK 317

Query: 205 VVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
           V    ++ V  + +V  ++++S L+  GR  +A   + E++  G +++     ++++ + 
Sbjct: 318 V----QMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKAIG 373

Query: 264 SEGEL 268
           S   L
Sbjct: 374 SSSSL 378



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 92/204 (45%), Gaps = 13/204 (6%)

Query: 48  TINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL 107
           T  S+L A   S      R+++ +I         +   S+IS+  +      +  +   +
Sbjct: 364 TFASVLKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFISM 423

Query: 108 KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI 167
           +  NL+     +N++M+G  +    +  + + ++M + +V+PD  TF  ++  CS+   +
Sbjct: 424 EAPNLVS----WNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVGLV 479

Query: 168 ---IKYYEQLKSAG---GQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS 221
              ++Y+  +K  G   G  T++ +  +++     G   +A  ++    +P+K  + V  
Sbjct: 480 DKGLEYFNLMKDKGYLVGARTEH-YACMVDLLGRAGYLNEAEYLI--NGMPIKPGASVYR 536

Query: 222 ALVSALASHGRTSDAIIVYEEIKE 245
           AL+SA   HG     I V + + E
Sbjct: 537 ALLSACQIHGNLEIVIRVSKRLIE 560


>gi|449503889|ref|XP_004162218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Cucumis sativus]
          Length = 697

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 116/283 (40%), Gaps = 45/283 (15%)

Query: 8   TPSSASYKKLITYSCDL--LKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
            PSS+++   IT +C L  L + V   V +  VQ  + P   T  +++ A  ++ +  + 
Sbjct: 401 VPSSSTFN--ITLACVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIG 458

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            R    + +  L  N  ++  +I    K K  D A  +  DL    + P    YN ++ G
Sbjct: 459 NRYMDRLINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGG 518

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI------------HNCSNE-------ED 166
           + R  ++  A  +L+ + ++  +PD  TF+ LI              C  E        +
Sbjct: 519 FCRNGNMDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPN 578

Query: 167 IIKY-------------------YEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVL 207
           +I Y                     Q+K  G Q   + F ALI  YT    F+KA ++  
Sbjct: 579 VITYNILICSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKL-F 637

Query: 208 DA--EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC 248
           D+   + ++  +    AL+ +L   GR   A  ++  +KE GC
Sbjct: 638 DSMLRLGIQPDNYTYGALIKSLCKSGRHDKAREIFLSMKENGC 680



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 78/408 (19%), Positives = 157/408 (38%), Gaps = 32/408 (7%)

Query: 31  LDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL 90
           ++V  Q+    L P+T   N+++ A  +S   +L    +  +  HN  P+  T+  +I  
Sbjct: 214 VEVFGQIGLLGLNPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHG 273

Query: 91  NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD 150
             ++   D A  L+  ++ +   P    Y  ++ G+F  K    A  VL+ M++ NV P+
Sbjct: 274 VCRLGVVDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGEAFKVLQTMKERNVVPN 333

Query: 151 SQTFSYLIHNC-------SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203
             T   L+H            E ++++ E+ +     +   +   L N            
Sbjct: 334 EATMRSLVHGVFRCIAPDKAFELLLEFVERKQGITQLVCDNILYCLSNNSMASEAVMFLI 393

Query: 204 QVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
           +   +  +P  S   +  A V        T     V++   ++G        + LIE L 
Sbjct: 394 KTGKEGYVPSSSTFNITLACVLKKLDLKVTC---TVFDNCVQSGVKPGFSTYLTLIEALY 450

Query: 264 SEGE-------LNRLIQ--LLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDK 314
             G+       ++RLI   L+  ++  +  +D  C       + K +  A+++ + L ++
Sbjct: 451 KAGKMEIGNRYMDRLINDGLISNIYSYNMVIDCLC-------KGKSMDRASEMFRDLHNR 503

Query: 315 FKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNA 374
                +         FC+    D        +LL+ +  E    P     + L+     A
Sbjct: 504 GISPNIVTYNTLIGGFCRNGNMDKAQ-----ELLEMLL-ESRFRPDIFTFNSLIDGLCQA 557

Query: 375 RDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
              + A   + E     +P NV++Y  +  +F A G+   ++ LL +M
Sbjct: 558 HKHENAFGCFTEMVEWDVPPNVITYNILICSFCAIGDVSRSTHLLRQM 605



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 69/152 (45%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I+P+  +Y  LI   C    +  A +++E +++    P   T NS++    ++++     
Sbjct: 505 ISPNIVTYNTLIGGFCRNGNMDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAF 564

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
             +  +   ++ PN  T+  +I     I D   +  LL  +K   + P    +NA++ GY
Sbjct: 565 GCFTEMVEWDVPPNVITYNILICSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGY 624

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
             K   Q A  +   M +  ++PD+ T+  LI
Sbjct: 625 TGKNRFQKAEKLFDSMLRLGIQPDNYTYGALI 656



 Score = 45.4 bits (106), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 68/397 (17%), Positives = 155/397 (39%), Gaps = 43/397 (10%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS 86
           V +++D+++Q+ +  L  + E +  +  +       N    ++  I    L P +  + +
Sbjct: 175 VLLSVDLLQQIKESGLKVTEELLCILFGSWGRLGLANYCVEVFGQIGLLGLNPTTRLYNA 234

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           ++   +K    D AY     +   N +P    YN ++ G  R   V  AL ++K+ME   
Sbjct: 235 VMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEALRLMKQMEGLG 294

Query: 147 VKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203
             P+  T++ LI    N     +  K  + +K       +    +L++    C   +KA 
Sbjct: 295 YFPNVFTYTILIDGFFNAKRAGEAFKVLQTMKERNVVPNEATMRSLVHGVFRCIAPDKAF 354

Query: 204 QVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
           +++L+  E        V   ++  L+++   S+A++   +  + G             ++
Sbjct: 355 ELLLEFVERKQGITQLVCDNILYCLSNNSMASEAVMFLIKTGKEG-------------YV 401

Query: 263 NSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAM 322
            S    N  +  + +  D    +   C +  +CV+       +  L  ++  +K  +M +
Sbjct: 402 PSSSTFNITLACVLKKLD----LKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKMEI 457

Query: 323 EYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHL 382
              + +                    + I D  GL  +    + ++      + + RA  
Sbjct: 458 GNRYMD--------------------RLIND--GLISNIYSYNMVIDCLCKGKSMDRASE 495

Query: 383 IWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLL 419
           ++++  N G+  N+++Y  +   F  +GN   A +LL
Sbjct: 496 MFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELL 532


>gi|356518400|ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Glycine max]
          Length = 546

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 126/284 (44%), Gaps = 11/284 (3%)

Query: 6   EITPSSASYKKLITYS------CDLLKVHVALDVVEQMV-QGELVPSTETINSILHACEE 58
           E+  S  SY  L+TYS      C   +V  A D+ E+MV +  +VP   T N +++    
Sbjct: 258 EMRNSEFSYPNLVTYSTLMDGLCRNGRVKEAFDLFEEMVSRDHIVPDPLTYNVLINGFCR 317

Query: 59  SYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM 118
             + +  R +   +  +   PN   + +++    K+   + A  +L ++K   L P A  
Sbjct: 318 GGKPDRARNVIQFMKSNGCYPNVYNYSALVDGLCKVGKLEDAKGVLAEIKGSGLKPDAVT 377

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLK 175
           Y +++    R      A+ +L+EM++   + DS TF+ L+     E   E+ +   E+L 
Sbjct: 378 YTSLINFLCRNGKSDEAIELLEEMKENGCQADSVTFNVLLGGLCREGKFEEALDMVEKLP 437

Query: 176 SAGGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTS 234
             G  + K  +  ++N+ T   E ++A++++ L      +      + L+  L   G   
Sbjct: 438 QQGVYLNKGSYRIVLNSLTQKCELKRAKELLGLMLRRGFQPHYATSNELLVCLCKAGMVD 497

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           DA +   ++ E G          LI  +  E +L  + +LL+E+
Sbjct: 498 DAAVALFDLVEMGFQPGLETWEVLIGLICRERKLLYVFELLDEL 541



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 101/213 (47%), Gaps = 7/213 (3%)

Query: 1   MHAKLEIT--PSSASYKKLITYSCDLLKVHVALDVVEQMVQGEL-VPSTETINSILHA-C 56
           +HAK ++T  P+   +  L+ Y C    +  A ++VE+M   E   P+  T ++++   C
Sbjct: 221 LHAKRDLTRKPNVCVFNILVKYHCKNGDLDSAFEIVEEMRNSEFSYPNLVTYSTLMDGLC 280

Query: 57  EESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTA 116
                         M+   ++ P+  T+  +I+   +    D A +++  +K     P  
Sbjct: 281 RNGRVKEAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNV 340

Query: 117 SMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSN--EEDIIKYYEQ 173
             Y+A++ G  +   ++ A  VL E++ + +KPD+ T++ LI+  C N   ++ I+  E+
Sbjct: 341 YNYSALVDGLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEE 400

Query: 174 LKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           +K  G Q     F  L+      G+FE+A  +V
Sbjct: 401 MKENGCQADSVTFNVLLGGLCREGKFEEALDMV 433



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 109/252 (43%), Gaps = 47/252 (18%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNL--KPNSETFRSMISLNVKIKDFDSAY 101
           PS + +++ L+   +S   +L R++  +    +L  KPN   F  ++  + K  D DSA+
Sbjct: 195 PSPKALSTCLNLLLDSNRVDLARKLL-LHAKRDLTRKPNVCVFNILVKYHCKNGDLDSAF 253

Query: 102 SLLDDLKEMNL-MPTASMYNAIMAGYFRKKDVQGALMVLKEM-EQANVKPDSQTFSYLIH 159
            ++++++      P    Y+ +M G  R   V+ A  + +EM  + ++ PD  T++    
Sbjct: 254 EIVEEMRNSEFSYPNLVTYSTLMDGLCRNGRVKEAFDLFEEMVSRDHIVPDPLTYN---- 309

Query: 160 NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSE 218
                                        LIN +   G+ ++AR V+             
Sbjct: 310 ----------------------------VLINGFCRGGKPDRARNVIQFMKSNGCYPNVY 341

Query: 219 VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLE 276
             SALV  L   G+  DA  V  EIK +G  L+P AV   +LI  L   G+ +  I+LLE
Sbjct: 342 NYSALVDGLCKVGKLEDAKGVLAEIKGSG--LKPDAVTYTSLINFLCRNGKSDEAIELLE 399

Query: 277 EVHDPDYWMDGC 288
           E+ +     +GC
Sbjct: 400 EMKE-----NGC 406


>gi|449433429|ref|XP_004134500.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g16890, mitochondrial-like
           [Cucumis sativus]
          Length = 688

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 116/282 (41%), Gaps = 45/282 (15%)

Query: 9   PSSASYKKLITYSCDL--LKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           PSS+++   IT +C L  L + V   V +  VQ  + P   T  +++ A  ++ +  +  
Sbjct: 393 PSSSTFN--ITLACVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGN 450

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R    + +  L  N  ++  +I    K K  D A  +  DL    + P    YN ++ G+
Sbjct: 451 RYMDRLINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGF 510

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI------------HNCSNE-------EDI 167
            R  ++  A  +L+ + ++  +PD  TF+ LI              C  E        ++
Sbjct: 511 CRNGNMDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNV 570

Query: 168 IKY-------------------YEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
           I Y                     Q+K  G Q   + F ALI  YT    F+KA ++  D
Sbjct: 571 ITYNILICSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKL-FD 629

Query: 209 A--EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC 248
           +   + ++  +    AL+ +L   GR   A  ++  +KE GC
Sbjct: 630 SMLRLGIQPDNYTYGALIKSLCKSGRHDKAREIFLSMKENGC 671



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 69/152 (45%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I+P+  +Y  LI   C    +  A +++E +++    P   T NS++    ++++     
Sbjct: 496 ISPNIVTYNTLIGGFCRNGNMDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAF 555

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
             +  +   ++ PN  T+  +I     I D   +  LL  +K   + P    +NA++ GY
Sbjct: 556 GCFTEMVEWDVPPNVITYNILICSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGY 615

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
             K   Q A  +   M +  ++PD+ T+  LI
Sbjct: 616 TGKNRFQKAEKLFDSMLRLGIQPDNYTYGALI 647



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 77/408 (18%), Positives = 155/408 (37%), Gaps = 41/408 (10%)

Query: 31  LDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL 90
           ++V  Q+    L P+T   N+++ A  +S   +L    +  +  HN  P+  T+  +I  
Sbjct: 214 VEVFGQIGLLGLNPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHG 273

Query: 91  NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD 150
             ++   D A  L+  ++ +   P    Y  ++ G+F  K       VL+ M++ NV P+
Sbjct: 274 VCRLGVVDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGETFKVLQTMKERNVVPN 333

Query: 151 SQTFSYLIHNC-------SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203
             T   L+H            E ++++ E+ +     +   +   L N            
Sbjct: 334 EATMRSLVHGVFRCIAPDKAFELLLEFVERKQGITQLVCDNILYCLSN-----------N 382

Query: 204 QVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
            +  +A +   S S     L   L           V++   ++G        + LIE L 
Sbjct: 383 SMASEAVMFXPSSSTFNITLACVLKKLD-LKVTCTVFDNCVQSGVKPGFSTYLTLIEALY 441

Query: 264 SEGE-------LNRLIQ--LLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDK 314
             G+       ++RLI   L+  ++  +  +D  C       + K +  A+++ + L ++
Sbjct: 442 KAGKMEIGNRYMDRLINDGLISNIYSYNMVIDCLC-------KGKSMDRASEMFRDLHNR 494

Query: 315 FKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNA 374
                +         FC+    D        +LL+ +  E    P     + L+     A
Sbjct: 495 GISPNIVTYNTLIGGFCRNGNMDKAQ-----ELLEMLL-ESRFRPDIFTFNSLIDGLCQA 548

Query: 375 RDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
              + A   + E     +P NV++Y  +  +F A G+   ++ LL +M
Sbjct: 549 HKHENAFGCFTEMVEWDVPPNVITYNILICSFCAIGDVSRSTHLLRQM 596


>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
           [Vitis vinifera]
          Length = 691

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 105/237 (44%), Gaps = 16/237 (6%)

Query: 30  ALDVVEQMVQ-GELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
           ALD+ ++M +     P   + NS+L+A  ES +++     +       L PN +T+  +I
Sbjct: 97  ALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILI 156

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
            ++ + K FD A  LL+ + E    P    Y  ++    +   +  AL +  EM +  V 
Sbjct: 157 KISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVT 216

Query: 149 PDSQTFSYLIHNCSNEEDII---KYYEQL---KSAGGQITKYVFMALINAYTTCGEFEKA 202
           PD   ++ LI     + DI+   + +E+L    S    I  Y  M  IN    CG+F+++
Sbjct: 217 PDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVM--INGLCKCGKFDES 274

Query: 203 RQVVLDAEIPVKSRSE---VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI 256
            ++     +    R +     S L+  L   G    A  VY+E+ E G  + P  V+
Sbjct: 275 FEIW--HRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENG--VSPDVVV 327



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 62/322 (19%), Positives = 120/322 (37%), Gaps = 45/322 (13%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           MH      P   SY  L+    +  K   A           L P+ +T N ++       
Sbjct: 104 MHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKK 163

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           +F+  + +   +      P+  ++ ++I+   K      A  L D++ E  + P  + YN
Sbjct: 164 QFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYN 223

Query: 121 AIMAGYFRKKDVQGA------------------------------------LMVLKEMEQ 144
            ++ G+F+K D+  A                                      +   M++
Sbjct: 224 ILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKK 283

Query: 145 ANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEK 201
                D  T+S LIH      N +   + Y+++   G      V+  ++N Y   G  E+
Sbjct: 284 NERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEE 343

Query: 202 ARQV--VLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
             ++  V++ E     R+ V  + L+  L  + +  +AI ++E + E  C  +      L
Sbjct: 344 CLELWKVMEKE---GCRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVL 400

Query: 259 IEHLNSEGELNRLIQLLEEVHD 280
           +  L   G LN+ + +LEE  +
Sbjct: 401 VHGLCKNGYLNKALSILEEAEN 422



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 77/413 (18%), Positives = 157/413 (38%), Gaps = 41/413 (9%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  SY  +I   C   K   + ++  +M + E      T ++++H    S   +   
Sbjct: 251 VYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGAT 310

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R+Y  +  + + P+   + +M++  ++    +    L   +++       S YN ++ G 
Sbjct: 311 RVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVS-YNILIRGL 369

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITK 183
           F    V  A+ + + + + +   DS T+  L+H  C N      +   E+ ++  G +  
Sbjct: 370 FENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDT 429

Query: 184 YVFMALINAYTTCGEFEKARQVVLD--AEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
           + + ++IN     G  ++   V LD   +   K    V +A+++      +  DA+  + 
Sbjct: 430 FAYSSMINGLCREGRLDEVAGV-LDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFG 488

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY---------WMDGCCRLI 292
            +   GC         LI  L+     +    L++E+    +          M+G C+  
Sbjct: 489 NMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQ-- 546

Query: 293 LHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIK 352
                 K+L  A +L  Q  +K    ++ M        C     +        D LQ   
Sbjct: 547 -----GKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVE--------DALQLYS 593

Query: 353 DELGLPPSRKCL------DFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSY 399
           +       RKC+      + L+      RD +RA  IW      G   +++SY
Sbjct: 594 EM----KQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGPQPDIISY 642



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 75/187 (40%), Gaps = 3/187 (1%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           K+  AL     MV     P+  T N++++   ++  F+    +   + H   KPN  T+ 
Sbjct: 479 KLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYS 538

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
            +++   + K  D A +L     E    P   M+N I+ G      V+ AL +  EM+Q 
Sbjct: 539 LLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQR 598

Query: 146 NVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
              P+  T + L+   +   + E   K ++ +   G Q     +   +    +C     A
Sbjct: 599 KCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGPQPDIISYNITLKGLCSCHRISDA 658

Query: 203 RQVVLDA 209
              + DA
Sbjct: 659 VGFLNDA 665



 Score = 45.1 bits (105), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 32/150 (21%), Positives = 64/150 (42%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  L+   C   K+ +AL++  Q ++    P  +  N I+H    S +     ++
Sbjct: 532 PNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQL 591

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           Y  +      PN  T  +++    K++DF+ A  + D + +    P    YN  + G   
Sbjct: 592 YSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGPQPDIISYNITLKGLCS 651

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
              +  A+  L +     V P + T++ L+
Sbjct: 652 CHRISDAVGFLNDAVDRGVLPTAITWNILV 681



 Score = 38.9 bits (89), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 30/187 (16%), Positives = 75/187 (40%), Gaps = 3/187 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  LI       +   A  +V++M+     P+  T + +++   +  + ++   +
Sbjct: 497 PTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNL 556

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +        KP+ +    +I         + A  L  ++K+   +P    +N +M G+++
Sbjct: 557 WCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYK 616

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYV 185
            +D + A  +   + Q   +PD  +++  +    +C    D + +       G   T   
Sbjct: 617 VRDFERASKIWDHILQYGPQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAIT 676

Query: 186 FMALINA 192
           +  L+ A
Sbjct: 677 WNILVRA 683


>gi|356509602|ref|XP_003523536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Glycine max]
          Length = 598

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 112/248 (45%), Gaps = 11/248 (4%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQM-VQGELVPSTETINSILHA-CEESY--EFNL 64
           P   +Y  LI   C + +V  A  +++++ + GE  P   +  +I+   C+ S   E NL
Sbjct: 209 PDVITYNTLIHGLCRINEVDRARSLLKEVCLNGEFAPDVVSYTTIISGYCKFSKMEEGNL 268

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
              ++  +      PN+ TF ++I    K+ D  SA +L + +     +P  + + +++ 
Sbjct: 269 ---LFGEMIRSGTAPNTFTFNALIGGFGKLGDMASALALYEKMLVQGCVPDVATFTSLIN 325

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK---SAGGQI 181
           GYFR   V  A+ +  +M   N+     TFS L+    N   + K  + L+    +    
Sbjct: 326 GYFRLGQVHQAMDMWHKMNDKNIGATLYTFSVLVSGLCNNNRLHKARDILRLLNESDIVP 385

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVY 240
             +++  +I+ Y   G  ++A ++V + E+   K      + L+      GR  +AI ++
Sbjct: 386 QPFIYNPVIDGYCKSGNVDEANKIVAEMEVNRCKPDKLTFTILIIGHCMKGRMPEAIGIF 445

Query: 241 EEIKEAGC 248
            ++   GC
Sbjct: 446 HKMLAVGC 453



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/287 (17%), Positives = 115/287 (40%), Gaps = 11/287 (3%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           KL ++ S  +Y  L+   C     H A  V + M     +P    +  ++ +       +
Sbjct: 64  KLHMSHSYLTYSLLLRSLCRSNLHHTAKVVYDWMRCDGQIPDNRLLGFLVWSYAIVGRLD 123

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
           + R +   +  +N+  N+  +  + ++ ++      A  L  +L  +   P     N +M
Sbjct: 124 VSRELLADVQCNNVGVNAVVYNDLFNVLIRQNKVVDAVVLFRELIRLRYKPVTYTVNILM 183

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA--GGQI 181
            G  R  ++  A  +L ++      PD  T++ LIH      ++ +    LK     G+ 
Sbjct: 184 RGLCRAGEIDEAFRLLNDLRSFGCLPDVITYNTLIHGLCRINEVDRARSLLKEVCLNGEF 243

Query: 182 TKYV--FMALINAYTTCGEFEKAR----QVVLDAEIPVKSRSEVKSALVSALASHGRTSD 235
              V  +  +I+ Y    + E+      +++     P    +   +AL+      G  + 
Sbjct: 244 APDVVSYTTIISGYCKFSKMEEGNLLFGEMIRSGTAP---NTFTFNALIGGFGKLGDMAS 300

Query: 236 AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPD 282
           A+ +YE++   GC  +     +LI      G++++ + +  +++D +
Sbjct: 301 ALALYEKMLVQGCVPDVATFTSLINGYFRLGQVHQAMDMWHKMNDKN 347


>gi|302757297|ref|XP_002962072.1| hypothetical protein SELMODRAFT_63596 [Selaginella moellendorffii]
 gi|300170731|gb|EFJ37332.1| hypothetical protein SELMODRAFT_63596 [Selaginella moellendorffii]
          Length = 413

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 96/198 (48%), Gaps = 9/198 (4%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y+ L+       +  VAL   ++M++    P+  T N ++ A  ++ ++ +V  + P + 
Sbjct: 171 YRGLVCVCATQGRWLVALTFFKEMLESGCKPTIVTYNVLMRALGKAGKWEIVLDLLPRMK 230

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
              + P+  T  ++++  +  ++FD A      +K   +     +YN I+    + K+ +
Sbjct: 231 ASGVAPDFYTVNAVLNGLIAAREFDRAMLFFHSVKSSGMKLDREVYNVILVACQKSKNWE 290

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALI 190
            AL +++EMEQ  + P+  TF  L+  C N + +   ++ YE +K        +V  +LI
Sbjct: 291 AALSLVQEMEQTGIAPNEVTFGPLLVACENAKQVEVALRLYEHMKQRRCVPNTHVVASLI 350

Query: 191 NAYTTCGE---FEKARQV 205
            A   CG+   +++AR +
Sbjct: 351 RA---CGKELMWQQARNI 365



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/197 (20%), Positives = 92/197 (46%), Gaps = 2/197 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  L+       K  + LD++ +M    + P   T+N++L+    + EF+     
Sbjct: 201 PTIVTYNVLMRALGKAGKWEIVLDLLPRMKASGVAPDFYTVNAVLNGLIAAREFDRAMLF 260

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    +K + E +  ++    K K++++A SL+ ++++  + P    +  ++     
Sbjct: 261 FHSVKSSGMKLDREVYNVILVACQKSKNWEAALSLVQEMEQTGIAPNEVTFGPLLVACEN 320

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMA 188
            K V+ AL + + M+Q    P++   + LI  C  E    +     + +   +  YV+ A
Sbjct: 321 AKQVEVALRLYEHMKQRRCVPNTHVVASLIRACGKELMWQQARNIYRVSSPNV--YVYNA 378

Query: 189 LINAYTTCGEFEKARQV 205
           LI+AY    ++  A++V
Sbjct: 379 LIDAYCRSQKYHLAKKV 395



 Score = 45.1 bits (105), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 61/316 (19%), Positives = 133/316 (42%), Gaps = 29/316 (9%)

Query: 80  NSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVL 139
           ++  + S+I+  +K  D   A ++ + +K+  + PT   Y A+M      +  + A  + 
Sbjct: 26  HANAYNSLITGLMKDGDEADAIAIFERMKQDRVAPTLYTYTAVMRALAHVQGWESAHRMF 85

Query: 140 KEME-QANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTT 195
            E+    ++KPD   ++ ++         E +++ +E+++  G       +  L++ +  
Sbjct: 86  SELVVHGSLKPDVAMYNTMLAAYGRGHKLERVLQTWERMRKEGCVENVGTYCLLVSTFVQ 145

Query: 196 CGEFEKARQVVLDAEIPVKSRS-----EVKSALVSALASHGRTSDAIIVYEEIKEAGCNL 250
             + + A    LDA   + S+       +   LV   A+ GR   A+  ++E+ E+GC  
Sbjct: 146 TNQADLA----LDAYARMNSQGLKATDGIYRGLVCVCATQGRWLVALTFFKEMLESGCKP 201

Query: 251 EPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDYWMDGCCRLILHCVRFKQLSSATD 306
                  L+  L   G+   ++ LL  +      PD++      ++   +  ++   A  
Sbjct: 202 TIVTYNVLMRALGKAGKWEIVLDLLPRMKASGVAPDFYTVNA--VLNGLIAAREFDRAML 259

Query: 307 LLKQLKDKFK--DDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCL 364
               +K      D E+   Y+   + CQ       + +  L L+Q + ++ G+ P+    
Sbjct: 260 FFHSVKSSGMKLDREV---YNVILVACQ----KSKNWEAALSLVQEM-EQTGIAPNEVTF 311

Query: 365 DFLLGACVNARDLKRA 380
             LL AC NA+ ++ A
Sbjct: 312 GPLLVACENAKQVEVA 327


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/285 (20%), Positives = 126/285 (44%), Gaps = 9/285 (3%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M ++  + P   SY  LI   C + ++  A  + +QM+    VP+  T N+ L+      
Sbjct: 147 MVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKG 206

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
                + +Y  +      P+  T+ ++I      +  D A+ L + +      P A  YN
Sbjct: 207 RIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYN 266

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSA 177
            ++ G  ++     A  + ++M +    PD  T++ L++   N    E  ++ ++++ S 
Sbjct: 267 CLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSK 326

Query: 178 GGQITKYVFMALINAYTTCGEFEKAR---QVVLDAEIPVKSRSEVKSALVSALASHGRTS 234
           G       +  L+  +   G+  +AR   QV++  E   K  +   + ++  L+   R  
Sbjct: 327 GHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRE--CKPDTVSHNIMIDGLSKAKRLD 384

Query: 235 DAIIVYEEI-KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           DA+ V+E + ++ GC+ +     +LI  L  E  L+  +++ +E+
Sbjct: 385 DAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEI 429



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 71/151 (47%), Gaps = 1/151 (0%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  L+   C++ K+  A++V ++MV     P     N +L     + +    R++
Sbjct: 295 PDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQL 354

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL-KEMNLMPTASMYNAIMAGYF 127
           + ++     KP++ +   MI    K K  D A  + + + ++    P    YN+++ G  
Sbjct: 355 FQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLC 414

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            ++ +  A+ V KE+++  + PD   F+ L+
Sbjct: 415 GEQRLSEAMKVFKEIDRLKLSPDPHAFNVLL 445


>gi|242094006|ref|XP_002437493.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
 gi|241915716|gb|EER88860.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
          Length = 1039

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/274 (20%), Positives = 116/274 (42%), Gaps = 5/274 (1%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  LI+      ++  A D + ++    L P+     SI+ A  +  +      ++ + 
Sbjct: 429 AYGVLISVLIKKHRLKEAKDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVGAALEVFKLT 488

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
            H   +PN+ T+ S+I   ++ +    A +L+  ++E  + P    Y  ++ G  +K + 
Sbjct: 489 EHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEF 548

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINA 192
             A  + + MEQ  + PD Q ++ L           + Y  L   G  +TK  + +L++ 
Sbjct: 549 DNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVKKGVVLTKVTYTSLVDG 608

Query: 193 YTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLE 251
           ++  G  E A  ++        K+ S   S L+ AL    + ++A+ + +++   G    
Sbjct: 609 FSKAGNTEFAAALIEKMVNEGCKADSHTYSVLLQALCKQKKLNEALSILDQMTLRGVKGN 668

Query: 252 PRAVIALIEHLNSEGELNRLIQLLEEV----HDP 281
             A   +I  +  EG+ +    +  E+    H P
Sbjct: 669 IVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKP 702



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 160/389 (41%), Gaps = 40/389 (10%)

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
           M+      PN  T+  +I    K      A  LLD++    ++P+   YNA++ GY +  
Sbjct: 278 MMLQDGCSPNLHTYTLLIRGLCKEGRIHDARVLLDEMPRRGVVPSVWTYNAMIDGYCKSG 337

Query: 131 DVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEEDIIKYYEQLKSA---GGQITKYVF 186
            ++ AL +   ME     PD  T++ LIH  C  + D  +  E L  A   G   T   F
Sbjct: 338 RLKDALGIKTLMEGNGCNPDDWTYNSLIHGLCGGKPD--EAEELLNGAIARGFSPTVITF 395

Query: 187 MALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK----SALVSALASHGRTSDAIIVYEE 242
             +IN Y    + + A +V     I + S+ ++       L+S L    R  +A     E
Sbjct: 396 TNIINGYCKAEKIDDALRV---KSIMISSKCKLDLQAYGVLISVLIKKHRLKEAKDTLNE 452

Query: 243 IKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLE----EVHDPDYWMDGCCRLILHCV 296
           I   G  L P  VI  ++I+     G++   +++ +    E   P+ W      LI   +
Sbjct: 453 IFANG--LSPNVVIYTSIIDAYCKVGKVGAALEVFKLTEHEGCRPNAWTYS--SLIYGLI 508

Query: 297 RFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELG 356
           + ++L  A  L+ ++++      +       +  C+    D         L + ++   G
Sbjct: 509 QDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDN-----AFRLFEMMEQN-G 562

Query: 357 LPPSRKCLDFLLGA-CVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSA 415
           L P  +  + L  A C + R  +    + K+    G+    ++Y  +   F  +GN + A
Sbjct: 563 LTPDEQAYNVLTDALCKSGRAEEAYSFLVKK----GVVLTKVTYTSLVDGFSKAGNTEFA 618

Query: 416 SKLLSKMP----KDDPHVRFV-IQA-CKQ 438
           + L+ KM     K D H   V +QA CKQ
Sbjct: 619 AALIEKMVNEGCKADSHTYSVLLQALCKQ 647



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/275 (17%), Positives = 115/275 (41%), Gaps = 5/275 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
            +P+  ++  +I   C   K+  AL V   M+  +     +    ++    + +     +
Sbjct: 388 FSPTVITFTNIINGYCKAEKIDDALRVKSIMISSKCKLDLQAYGVLISVLIKKHRLKEAK 447

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
                I  + L PN   + S+I    K+    +A  +    +     P A  Y++++ G 
Sbjct: 448 DTLNEIFANGLSPNVVIYTSIIDAYCKVGKVGAALEVFKLTEHEGCRPNAWTYSSLIYGL 507

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE--DIIKYYEQLKSAGGQITK 183
            + + +  A+ ++ +M++  + P   T++ LI   C   E  +  + +E ++  G    +
Sbjct: 508 IQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDE 567

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
             +  L +A    G  E+A   ++   + +   +   ++LV   +  G T  A  + E++
Sbjct: 568 QAYNVLTDALCKSGRAEEAYSFLVKKGVVLTKVT--YTSLVDGFSKAGNTEFAAALIEKM 625

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
              GC  +      L++ L  + +LN  + +L+++
Sbjct: 626 VNEGCKADSHTYSVLLQALCKQKKLNEALSILDQM 660



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 100/227 (44%), Gaps = 35/227 (15%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEE----SYEFNL 64
           PS+ +Y   I+  C + ++  A  ++ +M +  + P   T N  ++ C         F+ 
Sbjct: 702 PSAITYTVFISSYCKIGRIEEAGHLIGEMERNGVAPDVVTYNVFINGCGHMGYMDCAFST 761

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIK----------------DFDSAYSLLDDLK 108
           ++R+    C    +PN  T+  ++   +K+                   D+ + LL+ + 
Sbjct: 762 LKRMIDASC----EPNYWTYWLLLKHFLKMSLANAHYVDTSGMWNWIKLDTVWQLLERMV 817

Query: 109 EMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII 168
           +  L PTA  Y++I+AG+ +   ++ A ++L  M   ++ P+ + ++ LI  C +    I
Sbjct: 818 KHGLNPTAVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCD----I 873

Query: 169 KYYEQLKS-------AGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
           K +E+  S        G Q     +  LI      G+++KA+ +  D
Sbjct: 874 KLFEKAASFVTNMIECGFQPHLESYHYLITGLCDEGDYDKAKALFCD 920



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/276 (21%), Positives = 114/276 (41%), Gaps = 11/276 (3%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           +P+  +Y  LI   C   ++H A  ++++M +  +VPS  T N+++    +S        
Sbjct: 285 SPNLHTYTLLIRGLCKEGRIHDARVLLDEMPRRGVVPSVWTYNAMIDGYCKSGRLKDALG 344

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           I  ++  +   P+  T+ S+I      K  D A  LL+        PT   +  I+ GY 
Sbjct: 345 IKTLMEGNGCNPDDWTYNSLIHGLCGGKP-DEAEELLNGAIARGFSPTVITFTNIINGYC 403

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLI------HNCSNEEDIIKYYEQLKSAGGQI 181
           + + +  AL V   M  +  K D Q +  LI      H     +D +    ++ + G   
Sbjct: 404 KAEKIDDALRVKSIMISSKCKLDLQAYGVLISVLIKKHRLKEAKDTL---NEIFANGLSP 460

Query: 182 TKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
              ++ ++I+AY   G+   A +V  L      +  +   S+L+  L    +   A+ + 
Sbjct: 461 NVVIYTSIIDAYCKVGKVGAALEVFKLTEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALI 520

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276
            +++E G          LI+    + E +   +L E
Sbjct: 521 TKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFE 556



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/168 (19%), Positives = 72/168 (42%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  + P++ +Y  +I   C   ++  A  +++ M+  ++ P+ E    ++  C +   F 
Sbjct: 818 KHGLNPTAVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCDIKLFE 877

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
                   +     +P+ E++  +I+      D+D A +L  DL EM+       +  + 
Sbjct: 878 KAASFVTNMIECGFQPHLESYHYLITGLCDEGDYDKAKALFCDLLEMDYNHNEVAWKILN 937

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY 171
            G  +   V     +L  ME  + + DS+T+S + +N      + + Y
Sbjct: 938 DGLLKAGHVDICSQLLSAMENRHCRIDSETYSMVTNNIHEASGMYESY 985



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 68/160 (42%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  +  +  +Y  L+           A  ++E+MV       + T + +L A  +  + N
Sbjct: 592 KKGVVLTKVTYTSLVDGFSKAGNTEFAAALIEKMVNEGCKADSHTYSVLLQALCKQKKLN 651

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               I   +    +K N   +  +IS  +K    D A S+ +++      P+A  Y   +
Sbjct: 652 EALSILDQMTLRGVKGNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSAITYTVFI 711

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163
           + Y +   ++ A  ++ EME+  V PD  T++  I+ C +
Sbjct: 712 SSYCKIGRIEEAGHLIGEMERNGVAPDVVTYNVFINGCGH 751



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 83/206 (40%), Gaps = 16/206 (7%)

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           ++Y  +    L P++ T+ +MI    K      A+     L+E  +       NA++ GY
Sbjct: 169 KLYSQLVQEGLLPDTVTYNTMIMAYCKEGSLAIAHRYFRLLRESGMEMDTYTCNALLLGY 228

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-----CSNEEDIIKYYEQLKSAGGQI 181
            R  D++ A  +L  M     + +  +++ LI       C  E  ++     +   G   
Sbjct: 229 CRTGDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLLL--MMLQDGCSP 286

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS-----ALVSALASHGRTSDA 236
             + +  LI      G    AR V+LD E+P   R  V S     A++      GR  DA
Sbjct: 287 NLHTYTLLIRGLCKEGRIHDAR-VLLD-EMP--RRGVVPSVWTYNAMIDGYCKSGRLKDA 342

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHL 262
           + +   ++  GCN +     +LI  L
Sbjct: 343 LGIKTLMEGNGCNPDDWTYNSLIHGL 368



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 75/171 (43%), Gaps = 5/171 (2%)

Query: 36  QMVQGELVPSTETINSILHA-CEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKI 94
           Q+VQ  L+P T T N+++ A C+E     +  R + ++    ++ ++ T  +++    + 
Sbjct: 173 QLVQEGLLPDTVTYNTMIMAYCKEG-SLAIAHRYFRLLRESGMEMDTYTCNALLLGYCRT 231

Query: 95  KDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTF 154
            D   A  LL  +  M        Y  ++ G    + V+ AL++L  M Q    P+  T+
Sbjct: 232 GDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLLLMMLQDGCSPNLHTY 291

Query: 155 SYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
           + LI     E    D     +++   G   + + + A+I+ Y   G  + A
Sbjct: 292 TLLIRGLCKEGRIHDARVLLDEMPRRGVVPSVWTYNAMIDGYCKSGRLKDA 342



 Score = 42.4 bits (98), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 46/221 (20%), Positives = 91/221 (41%), Gaps = 16/221 (7%)

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMN---LMPTASMYNAIMAGYFRKKDVQGALMVLKEM 142
           SMIS +   +D   A   +  ++      L  +   YN  +    R    +    +  ++
Sbjct: 115 SMISCSGTAEDMREAVDAIQAIRRAGGKRLALSPKCYNLALRSLLRFDMTEHMGKLYSQL 174

Query: 143 EQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINAYTTCGEF 199
            Q  + PD+ T++ +I     E  +    +Y+  L+ +G ++  Y   AL+  Y   G+ 
Sbjct: 175 VQEGLLPDTVTYNTMIMAYCKEGSLAIAHRYFRLLRESGMEMDTYTCNALLLGYCRTGDL 234

Query: 200 EKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
            KA  +++   +    R+E   + L+  L       +A+++   + + GC+        L
Sbjct: 235 RKACWLLMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLLLMMLQDGCSPNLHTYTLL 294

Query: 259 IEHLNSEGELNRLIQLLEEVHD----PDYW-----MDGCCR 290
           I  L  EG ++    LL+E+      P  W     +DG C+
Sbjct: 295 IRGLCKEGRIHDARVLLDEMPRRGVVPSVWTYNAMIDGYCK 335


>gi|255572062|ref|XP_002526972.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533724|gb|EEF35459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 510

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 72/133 (54%), Gaps = 3/133 (2%)

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
           L+R +Y  +    ++P+ ETF S+I   +K      A+   D +K M L+P  S+YN ++
Sbjct: 101 LLREVYDDMMLDGVQPSRETFYSLIVGTLKGARLSDAFFFRDQMKAMGLLPDVSLYNFLI 160

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY---EQLKSAGGQ 180
           +   + K+   A+ +L+EM+   VKP+ QT+  L++ C+    + + Y     + +AG  
Sbjct: 161 STCGKCKNSDQAVQILEEMKINEVKPNGQTYVCLLNACAAAGRLDRVYAIVRDMTAAGAG 220

Query: 181 ITKYVFMALINAY 193
           + K+ +  LI A+
Sbjct: 221 LNKFCYAGLIAAH 233


>gi|255585033|ref|XP_002533225.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526957|gb|EEF29157.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 605

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/287 (20%), Positives = 121/287 (42%), Gaps = 4/287 (1%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           KL +  ++ ++  LI   C   K+  A+ ++ +M      P   + N+IL    +  + N
Sbjct: 41  KLGVEVNTNTFNILICGCCIENKLSEAIGLIGKMKHFSCFPDNVSYNTILDVLCKKGKLN 100

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             R +   + ++ L PN  TF  ++S   K+     A  ++D +   N++P    Y  ++
Sbjct: 101 EARDLLLDMKNNGLFPNRNTFNILVSGYCKLGWLKEAAEVIDIMARNNVLPDVRTYTTLI 160

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQ 180
            G  +   +  A  +  EME   + P   T++ LI+ C      +K +E   +++  G +
Sbjct: 161 GGLCKDGKIDEAFRLRDEMENLKLLPHVVTYNMLINGCFECSSSLKGFELIDEMEGKGVK 220

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIV 239
                +  ++  Y   G+ + A   +   E    S   V  + L +     GR S+A  +
Sbjct: 221 PNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLSNGYCKAGRLSEAFRM 280

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
            +E+   G  +    +  ++  L  E +L+   +LL       Y++D
Sbjct: 281 MDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVD 327



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 123/293 (41%), Gaps = 18/293 (6%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYE- 61
           A+  + P   +Y  LI   C   K+  A  + ++M   +L+P   T N +++ C E    
Sbjct: 145 ARNNVLPDVRTYTTLIGGLCKDGKIDEAFRLRDEMENLKLLPHVVTYNMLINGCFECSSS 204

Query: 62  ---FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM 118
              F L+  +        +KPN+ T+  ++   VK    D+A + L  ++E    P    
Sbjct: 205 LKGFELIDEME----GKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVT 260

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA- 177
           +N +  GY +   +  A  ++ EM +  +K +S T + ++H    E  +   Y+ L SA 
Sbjct: 261 FNTLSNGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSAS 320

Query: 178 --GGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSD 235
             G  + +  +  LI  Y   G+     ++     IP          ++  L   G+T  
Sbjct: 321 KRGYFVDEVSYGTLIMGYFKVGKSXXWDEMKEKEIIP---SIITYGTMIGGLCRSGKTDQ 377

Query: 236 AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLI----QLLEEVHDPDYW 284
           +I    E+ E+G   +      +I     EG++++      +++++   PD +
Sbjct: 378 SIDKCNELLESGLVPDQTTYNTIILGYCREGQVDKAFHFRNKMVKKSFKPDLF 430



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 4/173 (2%)

Query: 79  PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMV 138
           P+  T+ +MI    +    D +    ++L E  L+P  + YN I+ GY R+  V  A   
Sbjct: 357 PSIITYGTMIGGLCRSGKTDQSIDKCNELLESGLVPDQTTYNTIILGYCREGQVDKAFHF 416

Query: 139 LKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTT 195
             +M + + KPD  T + L+     E   +  +K ++   S G  I    F  +I+    
Sbjct: 417 RNKMVKKSFKPDLFTCNILVRGLCTEGMLDKALKLFKTWISKGKAIDAVTFNTIISGLCE 476

Query: 196 CGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
            G FE+A  ++ +  E  +       +A++SALA  GR  +A      I E G
Sbjct: 477 EGRFEEAFDLLAEMEEKKLGPDCYTHNAILSALADAGRMKEAEEFMSGIVEQG 529



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 55/282 (19%), Positives = 111/282 (39%), Gaps = 16/282 (5%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P++ +Y  ++ +     K+  A + + +M +    P   T N++ +   ++   +   
Sbjct: 219 VKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLSNGYCKAGRLSEAF 278

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R+   +    LK NS T  +++      +  D AY LL    +         Y  ++ GY
Sbjct: 279 RMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGY 338

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI----HNCSNEEDIIKYYEQLKSAGGQIT 182
           F+     G      EM++  + P   T+  +I     +   ++ I K  E L+S G    
Sbjct: 339 FK----VGKSXXWDEMKEKEIIPSIITYGTMIGGLCRSGKTDQSIDKCNELLES-GLVPD 393

Query: 183 KYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAII 238
           +  +  +I  Y   G+ +KA     ++V  +  P      +   LV  L + G    A+ 
Sbjct: 394 QTTYNTIILGYCREGQVDKAFHFRNKMVKKSFKPDLFTCNI---LVRGLCTEGMLDKALK 450

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           +++     G  ++      +I  L  EG       LL E+ +
Sbjct: 451 LFKTWISKGKAIDAVTFNTIISGLCEEGRFEEAFDLLAEMEE 492



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 2/154 (1%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINS-ILHACEESYEFNL 64
           EI PS  +Y  +I   C   K   ++D   ++++  LVP   T N+ IL  C E  + + 
Sbjct: 354 EIIPSIITYGTMIGGLCRSGKTDQSIDKCNELLESGLVPDQTTYNTIILGYCREG-QVDK 412

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
                  +   + KP+  T   ++         D A  L            A  +N I++
Sbjct: 413 AFHFRNKMVKKSFKPDLFTCNILVRGLCTEGMLDKALKLFKTWISKGKAIDAVTFNTIIS 472

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
           G   +   + A  +L EME+  + PD  T + ++
Sbjct: 473 GLCEEGRFEEAFDLLAEMEEKKLGPDCYTHNAIL 506


>gi|255548994|ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545497|gb|EEF47002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 927

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 122/278 (43%), Gaps = 8/278 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  SY  +I   C    + +A  V   M+   L P+  T + ++    ++ +     
Sbjct: 484 LAPTKVSYNSMILGHCRQGNLDMAASVFSDMLDCGLKPNVITYSILMDGYFKNGDTEYAF 543

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +   N+ P+  T+   I+   K+     A  +L    E   +P    YN+IM G+
Sbjct: 544 YVFDRMVDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGF 603

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEED--IIKYYEQLKSAGGQITK 183
            ++  V  AL   +EM ++ V P+  T++ LI+  C N      +K   ++++ G ++  
Sbjct: 604 IKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGLELDI 663

Query: 184 YVFMALINAYTTCGEFEKARQV---VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
             + ALI+ +    + E A  +   +LD  +     S + ++L+S   +      A+ + 
Sbjct: 664 AAYGALIDGFCKKQDIETASWLFSELLDGGL--SPNSVIYNSLISGYRNLNNMEAALNLQ 721

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           + +   G + + +    LI+ L  EG L   + L  E+
Sbjct: 722 KRMLGEGISCDLQTYTTLIDGLLKEGRLVLALDLYSEM 759



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 140/324 (43%), Gaps = 20/324 (6%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I PS  +Y   I   C + +   A D++++ V+   VP   T NSI+    +    +   
Sbjct: 554 IVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSAL 613

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
             Y  +C   + PN  T+ ++I+   K  + D A  + ++++   L    + Y A++ G+
Sbjct: 614 TAYREMCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGF 673

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITK 183
            +K+D++ A  +  E+    + P+S  ++ LI    N +N E  +   +++   G     
Sbjct: 674 CKKQDIETASWLFSELLDGGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDL 733

Query: 184 YVFMALINAYTTCGEFEKARQVV---LDAEIPVKSRSE---VKSALVSALASHGRTSDAI 237
             +  LI+     G  ++ R V+   L +E+  K       + + L++ L   G+  +A 
Sbjct: 734 QTYTTLID-----GLLKEGRLVLALDLYSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQ 788

Query: 238 IVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHC 295
            +  E++    ++ P   I  ALI      G L    +L  E+ D     +     IL  
Sbjct: 789 KILAEMERD--SITPNVPIYNALIAGHFKAGNLQEAFRLHNEMLDKGLTPNDTTYDILIN 846

Query: 296 VRFKQLSSATDLLKQLKDKFKDDE 319
            + K  +SA   L  L  KFKD +
Sbjct: 847 GKIKGGNSALKSLLSL--KFKDGK 868



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/314 (19%), Positives = 118/314 (37%), Gaps = 44/314 (14%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILH------------- 54
           +P+  +Y  LI + C    +  A D+  QM    + P+   +NS++              
Sbjct: 381 SPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKNKNICPTVFIVNSLIRGFLKVESREEASK 440

Query: 55  ------ACEESYEFNL---------------VRRIYPMICHHNLKPNSETFRSMISLNVK 93
                 AC+ +  F                    ++  +    L P   ++ SMI  + +
Sbjct: 441 LFDEAVACDIANIFTYNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCR 500

Query: 94  IKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQT 153
             + D A S+  D+ +  L P    Y+ +M GYF+  D + A  V   M   N+ P   T
Sbjct: 501 QGNLDMAASVFSDMLDCGLKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFT 560

Query: 154 FSYLIHN------CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVL 207
           ++  I+        S  +D++K + +    G       + ++++ +   G    A     
Sbjct: 561 YNIKINGLCKVGRTSEAQDMLKKFVE---KGFVPVCLTYNSIMDGFIKEGSVSSALTAYR 617

Query: 208 D-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
           +  E  V       + L++    +  T  A+ +  E++  G  L+  A  ALI+    + 
Sbjct: 618 EMCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQ 677

Query: 267 ELNRLIQLLEEVHD 280
           ++     L  E+ D
Sbjct: 678 DIETASWLFSELLD 691



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/171 (20%), Positives = 79/171 (46%), Gaps = 3/171 (1%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           K++ A+    ++V+ ++VP  + +N +L A  ++      R +Y  +    +  +  T  
Sbjct: 189 KLNDAIGCFNRLVESDIVPWIKFLNFLLTALVKNDMIYEAREVYEKMVLKGVHGDCFTVH 248

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
            M+  N+K  + + A     + K   +   A+ Y+ ++  + +  DV+ A  +LK+M   
Sbjct: 249 IMMRANLKDNNEEEAKKFFLEAKSRGVKLDAAAYSIVIQAFCKNLDVELACGLLKDMRDK 308

Query: 146 NVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINAY 193
              P   TF+ +I  C  + +++   +  +++ S G Q+   V   L+  Y
Sbjct: 309 GWVPSEGTFTSVIGACVKQGNMVEALRLKDEMVSCGVQMNVVVATTLVKGY 359


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 113/242 (46%), Gaps = 11/242 (4%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           +S S+  +I    D      A+ +  +MVQ  +  +  ++ + L AC E    + VRR++
Sbjct: 184 NSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVH 243

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
            ++    L  N     ++I+   K K  D A  + ++L       T   +NA++ G+ + 
Sbjct: 244 ELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKK---TRISWNAMILGFTQN 300

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY-YEQLKSAGGQITK--YVF 186
           +  + A  +   M+  NV+PDS T   +I   ++  D ++  +    S   Q+ +  YV 
Sbjct: 301 ECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVL 360

Query: 187 MALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKE 245
            ALI+ Y+ CG    AR++   A    + R  +  +A++    SHG    A+ ++EE+K 
Sbjct: 361 TALIDMYSKCGRVSIARRLFDSA----RDRHVITWNAMIHGYGSHGFGQAAVELFEEMKG 416

Query: 246 AG 247
            G
Sbjct: 417 TG 418



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 110/244 (45%), Gaps = 17/244 (6%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P   T  ++L  C    +    R ++  +    L   S    ++ ++  K +    A  +
Sbjct: 14  PVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRV 73

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM--EQANVKPDSQTFSYLIHNC 161
            D +   + +     +NA++AGY R      A+  +  M  E+   +PDS T   ++  C
Sbjct: 74  FDRMPSRDRVA----WNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPAC 129

Query: 162 SNEEDIIKYYE----QLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRS 217
           ++   +    E     L++   ++   V  A+++AY  CG  E AR  V D  +PV++ S
Sbjct: 130 ADARALHACREVHAFALRAGLDELVN-VSTAVLDAYCKCGAVEAAR-AVFDC-MPVRN-S 185

Query: 218 EVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG---ELNRLIQL 274
              +A++   A +G  ++A+ ++  + + G ++   +V+A ++     G   E+ R+ +L
Sbjct: 186 VSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHEL 245

Query: 275 LEEV 278
           L  V
Sbjct: 246 LVRV 249


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 63/300 (21%), Positives = 133/300 (44%), Gaps = 25/300 (8%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           ++P+  +Y  LI   C    +  A+++ +QM    L P+  T  +++    +    N   
Sbjct: 343 LSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAY 402

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           ++   +      P+  T+ +++     +     A  +L  + E  L P    Y+ ++AG+
Sbjct: 403 KVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGF 462

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITK 183
            R++++  A  + +EM +  V PD+ T+S LI     ++ +++ ++   ++   G    +
Sbjct: 463 CRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDE 522

Query: 184 YVFMALINAYTTCGEFEKARQV-----------------VLDAEIPVKSRSEVKSALVSA 226
             + +LINAY   GE  KA ++                 VL   +  K+R++V   L+  
Sbjct: 523 VTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLK 582

Query: 227 LASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN---RLIQ-LLEEVHDPD 282
           L       D  + Y  + E   N E ++V  L++    +G +N   R+ + +L+  H P+
Sbjct: 583 LFYEESVPDD-VTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPN 641



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 121/274 (44%), Gaps = 27/274 (9%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESY---EF 62
           + P   SY  +I   C   ++  A  + E+MV+  ++P T T +S++   C +      F
Sbjct: 448 LPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAF 507

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           +L R +        L P+  T+ S+I+      +   A  L D++ +   +P    Y+ +
Sbjct: 508 DLFREMM----RRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVL 563

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQIT 182
           + G  +K   + A  +L ++      PD  T++ LI NCSN E         KS  G + 
Sbjct: 564 INGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIENCSNNE--------FKSVEGLVK 615

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
            +    L+N      E ++  + +L      K  + + + ++   +  G    A  +Y E
Sbjct: 616 GFCMKGLMN------EADRVFKTMLQRNH--KPNAAIYNLMIHGHSRGGNVHKAYNLYME 667

Query: 243 IKEAGCNLEPRAVIALIEHLNSEG---ELNRLIQ 273
           ++ +       AVIAL++ L  EG   EL+RL+Q
Sbjct: 668 LEHSSFACHTVAVIALVKALAREGMNDELSRLLQ 701



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/312 (20%), Positives = 129/312 (41%), Gaps = 43/312 (13%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I+P+  +Y  LI  SC   KV  A+ ++  M  G +  +  + NS+++            
Sbjct: 238 ISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVING----------- 286

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
                +C                             L+++++   L+P    YN ++ G+
Sbjct: 287 -----LCGKG-------------------RMSEVGELVEEMRGKGLVPDEVTYNTLVNGF 322

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC----SNEEDIIKYYEQLKSAGGQIT 182
            ++ ++   L++L EM    + P+  T++ LI NC     N    ++ ++Q++  G +  
Sbjct: 323 CKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLI-NCMCKAGNLSRAVEIFDQMRVRGLRPN 381

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYE 241
           +  +  LI+ +   G   +A +V+ +  +   S S V  +ALV      GR  +A+ +  
Sbjct: 382 ERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILR 441

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFK 299
            + E G   +  +   +I     E EL +  Q+ EE+ +     D      LI      +
Sbjct: 442 GMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQ 501

Query: 300 QLSSATDLLKQL 311
           +L  A DL +++
Sbjct: 502 KLVEAFDLFREM 513



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 76/433 (17%), Positives = 179/433 (41%), Gaps = 35/433 (8%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-----CEESYEFNL 64
           SSA +  ++     L  V  AL ++    +    P+  + N++L A          +++ 
Sbjct: 131 SSAVFDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDD 190

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
             R++  +  + + PN  T+  +I   V   D +     +  +++  + P    YN ++ 
Sbjct: 191 AERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLID 250

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQI 181
              +KK V+ A+ +L+ M    V  +  +++ +I+    +    ++ +  E+++  G   
Sbjct: 251 ASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVP 310

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE---VKSALVSALASHGRTSDAII 238
            +  +  L+N +  C E    + +VL +E+  K  S      + L++ +   G  S A+ 
Sbjct: 311 DEVTYNTLVNGF--CKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVE 368

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEE---------VHDPDYWMDGCC 289
           ++++++  G     R    LI+    +G +N   ++L E         V   +  + G C
Sbjct: 369 IFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYC 428

Query: 290 RLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQ 349
            L        ++  A  +L+ + ++    ++         FC+       ++     + +
Sbjct: 429 FL-------GRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCR-----ERELGKAFQMKE 476

Query: 350 FIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLAS 409
            + ++  LP +      + G C+  + L  A  +++E    GLP + ++Y  +  A+   
Sbjct: 477 EMVEKGVLPDTVTYSSLIQGLCLQQK-LVEAFDLFREMMRRGLPPDEVTYTSLINAYCVD 535

Query: 410 GNRKSASKLLSKM 422
           G    A +L  +M
Sbjct: 536 GELSKALRLHDEM 548


>gi|125562731|gb|EAZ08111.1| hypothetical protein OsI_30376 [Oryza sativa Indica Group]
          Length = 794

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 113/259 (43%), Gaps = 17/259 (6%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
            I+P    Y  +I    +  ++  AL  ++ M +   VP T   N++L    +  +    
Sbjct: 342 NISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERA 401

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +   +  +NL  +S T   MI    K    D A  + D++ E    PT   YNA++ G
Sbjct: 402 HTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDG 461

Query: 126 YFRKKDVQGALMVLKEMEQ-------------ANVKPDSQTFSYLIHNCSNEEDIIKYYE 172
           ++R+  ++ A M+  +ME              AN   DS++   L+H+      ++K Y+
Sbjct: 462 FYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVRDSESLRKLVHDMCQSGQVLKAYK 521

Query: 173 QLKSA--GGQITKYV-FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALA 228
            L+S    G +   V +  LIN        + A ++  + ++   S  E+    L+  L 
Sbjct: 522 LLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLL 581

Query: 229 SHGRTSDAIIVYEEIKEAG 247
              R +DA+++++ I ++G
Sbjct: 582 RAHRENDAMMLFQNILQSG 600



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 51/292 (17%), Positives = 116/292 (39%), Gaps = 8/292 (2%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           SS+++  L+       +   A+    +M + +  P+    N+IL A  +S    L   +Y
Sbjct: 136 SSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALY 195

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
             +      PN  T+  ++    K      A  + D++ +  +MP   +Y  +++     
Sbjct: 196 NRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNA 255

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQ---LKSAGGQITKYVF 186
             +  A+ +L  M+     PD  T++  +        + + +++   L+  G  +    +
Sbjct: 256 GKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGY 315

Query: 187 MALINAYTTCGEFEKA---RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
             LI+       F++     + +L+  I       + + ++   A  GR  DA+   + +
Sbjct: 316 SCLIDGLFQARRFDEGFGYYKTMLERNI--SPDVVLYTIMIRGCAEAGRIEDALSFLDVM 373

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHC 295
           K+ G   +      +++ L   G+L R   L  E+   +  +D   + I+ C
Sbjct: 374 KKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMIC 425



 Score = 42.7 bits (99), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 38/191 (19%), Positives = 79/191 (41%), Gaps = 4/191 (2%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
            L  +S  F ++++ +        A      + E    PTA +YN I+        +  A
Sbjct: 132 GLPASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLA 191

Query: 136 LMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINA 192
           L +   M  A   P+  T++ L+     +    D +K ++++   G      ++  L+++
Sbjct: 192 LALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSS 251

Query: 193 YTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLE 251
               G+ ++A Q++   +       EV  +A +S L   GR ++A      +++ G  L 
Sbjct: 252 LCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALG 311

Query: 252 PRAVIALIEHL 262
            +    LI+ L
Sbjct: 312 LKGYSCLIDGL 322


>gi|356541064|ref|XP_003539003.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
           chloroplastic-like [Glycine max]
          Length = 703

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/254 (21%), Positives = 120/254 (47%), Gaps = 7/254 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           ++ ++  Y  L+   C   +V  A  +  +M    + P+  T N +++A     +  +V 
Sbjct: 362 VSSNTIVYNTLMDAYCKSNRVEEAEGLFVEMKTKGIKPTEATFNILMYAYSRKMQPEIVE 421

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDF-DSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           ++   +    LKPN++++  +IS   K K+  D A      +K+  + PT+  Y A++  
Sbjct: 422 KLMAEMQETGLKPNAKSYTCIISAYGKQKNMSDMAADAFLKMKKDGIKPTSHSYTALIHA 481

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQIT 182
           Y      + A    + M++  +KP  +T++ L+       + + ++K ++ ++    + T
Sbjct: 482 YSVSGWHEKAYAAFENMQREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMRREKVEGT 541

Query: 183 KYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
           +  F  L++ +   G +++AR V+   A + +       + L++A A  GR S    + E
Sbjct: 542 RVTFNTLVDGFAKHGYYKEARDVISKFANVGLHPTVMTYNMLMNAYARGGRHSKLPELLE 601

Query: 242 EIKEAGCNLEPRAV 255
           E+  A  NL+P +V
Sbjct: 602 EM--AAHNLKPDSV 613



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 98/220 (44%), Gaps = 17/220 (7%)

Query: 7   ITPSSASYKKLI-TYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           I P+S SY  LI  YS        A    E M +  + PS ET  ++L A   + +   +
Sbjct: 468 IKPTSHSYTALIHAYSVSGWH-EKAYAAFENMQREGIKPSIETYTALLDAFRRAGDTQTL 526

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            +I+ ++    ++    TF +++    K   +  A  ++     + L PT   YN +M  
Sbjct: 527 MKIWKLMRREKVEGTRVTFNTLVDGFAKHGYYKEARDVISKFANVGLHPTVMTYNMLMNA 586

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK--YYEQLKSAGGQITK 183
           Y R         +L+EM   N+KPDS T+S +I+      D  +  +Y Q     GQ+  
Sbjct: 587 YARGGRHSKLPELLEEMAAHNLKPDSVTYSTMIYAFLRVRDFSQAFFYHQEMVKSGQVMD 646

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSAL 223
                 +++Y      +K R  VLDA+  +K+R + +S +
Sbjct: 647 ------VDSY------QKLR-AVLDAKAAIKNRKDRRSMI 673



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/254 (20%), Positives = 111/254 (43%), Gaps = 5/254 (1%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL ++ ++ +  +  +T   N+++ A  +S        ++  +    +KP   TF  ++ 
Sbjct: 350 ALIILSELEKKGVSSNTIVYNTLMDAYCKSNRVEEAEGLFVEMKTKGIKPTEATFNILMY 409

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQG-ALMVLKEMEQANVK 148
              +    +    L+ +++E  L P A  Y  I++ Y ++K++   A     +M++  +K
Sbjct: 410 AYSRKMQPEIVEKLMAEMQETGLKPNAKSYTCIISAYGKQKNMSDMAADAFLKMKKDGIK 469

Query: 149 PDSQTFSYLIHNCS---NEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           P S +++ LIH  S     E     +E ++  G + +   + AL++A+   G+ +   ++
Sbjct: 470 PTSHSYTALIHAYSVSGWHEKAYAAFENMQREGIKPSIETYTALLDAFRRAGDTQTLMKI 529

Query: 206 V-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
             L     V+      + LV   A HG   +A  V  +    G +        L+     
Sbjct: 530 WKLMRREKVEGTRVTFNTLVDGFAKHGYYKEARDVISKFANVGLHPTVMTYNMLMNAYAR 589

Query: 265 EGELNRLIQLLEEV 278
            G  ++L +LLEE+
Sbjct: 590 GGRHSKLPELLEEM 603



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 70/160 (43%), Gaps = 5/160 (3%)

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
           K K  D    L  +L        + +YNA ++G       + A  V + ME  NV PD  
Sbjct: 237 KAKMGDKLMVLFTNLPSSREFRDSHVYNAAISGLLSSARYEDAWKVYESMEADNVLPDHV 296

Query: 153 TFSYLI----HNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
           T S ++        + +D  +++E++   G +  + V  ALI ++   G   +A  ++ +
Sbjct: 297 TCSIMVIVMRKLGHSAKDAWQFFEKMNGKGVKWGEEVLGALIKSFCVEGLMSEALIILSE 356

Query: 209 AEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
            E   V S + V + L+ A     R  +A  ++ E+K  G
Sbjct: 357 LEKKGVSSNTIVYNTLMDAYCKSNRVEEAEGLFVEMKTKG 396


>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
          Length = 650

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 105/235 (44%), Gaps = 12/235 (5%)

Query: 30  ALDVVEQMVQ-GELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
           ALD+ ++M +     P   + NS+L+A  ES +++     +       L PN +T+  +I
Sbjct: 97  ALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILI 156

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
            ++ + K FD A  LL+ + E    P    Y  ++    +   +  AL +  EM +  V 
Sbjct: 157 KISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVT 216

Query: 149 PDSQTFSYLIHNCSNEEDII---KYYEQL---KSAGGQITKYVFMALINAYTTCGEFEKA 202
           PD   ++ LI     + DI+   + +E+L    S    I  Y  M  IN    CG+F+++
Sbjct: 217 PDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVM--INGLCKCGKFDES 274

Query: 203 RQVVLDAEIPVKSRS-EVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI 256
            ++    +   + +     S L+  L   G    A  VY+E+ E G  + P  V+
Sbjct: 275 FEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENG--VSPDVVV 327



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 62/322 (19%), Positives = 120/322 (37%), Gaps = 45/322 (13%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           MH      P   SY  L+    +  K   A           L P+ +T N ++       
Sbjct: 104 MHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKK 163

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           +F+  + +   +      P+  ++ ++I+   K      A  L D++ E  + P  + YN
Sbjct: 164 QFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYN 223

Query: 121 AIMAGYFRKKDVQGA------------------------------------LMVLKEMEQ 144
            ++ G+F+K D+  A                                      +   M++
Sbjct: 224 ILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKK 283

Query: 145 ANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEK 201
                D  T+S LIH      N +   + Y+++   G      V+  ++N Y   G  E+
Sbjct: 284 NERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEE 343

Query: 202 ARQV--VLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
             ++  V++ E     R+ V  + L+  L  + +  +AI ++E + E  C  +      L
Sbjct: 344 CLELWKVMEKE---GCRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVL 400

Query: 259 IEHLNSEGELNRLIQLLEEVHD 280
           +  L   G LN+ + +LEE  +
Sbjct: 401 VHGLCKNGYLNKALSILEEAEN 422



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 102/244 (41%), Gaps = 10/244 (4%)

Query: 12  ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVRRIYP 70
            SY  LI    +  KV  A+ + E + + +    + T   ++H  C+  Y   L + +  
Sbjct: 360 VSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGY---LNKALSI 416

Query: 71  MICHHNLKPNSETF--RSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +    N + + +TF   SMI+   +    D    +LD + +    P   + NA++ G+ R
Sbjct: 417 LEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVR 476

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKS---AGGQITKYV 185
              ++ AL     M      P   T++ LI+  S  E   + Y  +K     G +     
Sbjct: 477 ASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMIT 536

Query: 186 FMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +  L+N      + + A  +   A E   K   ++ + ++  L S G+  DA+ +Y E+K
Sbjct: 537 YSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMK 596

Query: 245 EAGC 248
           +  C
Sbjct: 597 QRKC 600



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 86/427 (20%), Positives = 163/427 (38%), Gaps = 63/427 (14%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELV-PSTETINSILHACEESYEFNLV 65
           +TP  A Y  LI        +  A ++ E++++G  V P+  + N +++   +  +F+  
Sbjct: 215 VTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDES 274

Query: 66  RRIYPMICHHNLKPNSE-----TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
             I+     H +K N       T+ ++I       + D A  +  ++ E  + P   +YN
Sbjct: 275 FEIW-----HRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYN 329

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSA 177
            ++ GY R   ++  L + K ME+   +    +++ LI      +  ++ I  +E L   
Sbjct: 330 TMLNGYLRAGRIEECLELWKVMEKEGCR-TVVSYNILIRGLFENAKVDEAISIWELLPEK 388

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK----SALVSALASHGRT 233
                   +  L++     G   KA  ++ +AE     R ++     S++++ L   GR 
Sbjct: 389 DCCADSMTYGVLVHGLCKNGYLNKALSILEEAE---NGRGDLDTFAYSSMINGLCREGRL 445

Query: 234 SDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC---- 289
            +   V +++ + GC   P    A+I       +L   ++    +        GC     
Sbjct: 446 DEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVS-----KGCFPTVV 500

Query: 290 ---RLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTD--------- 337
               LI    + ++ S A  L+K++  K     M          CQ    D         
Sbjct: 501 TYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQA 560

Query: 338 -----PPDVQI------GLDLLQFIKDELGL---PPSRKCL------DFLLGACVNARDL 377
                 PDV++      GL     ++D L L      RKC+      + L+      RD 
Sbjct: 561 LEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDF 620

Query: 378 KRAHLIW 384
           +RA  IW
Sbjct: 621 ERASKIW 627


>gi|255553139|ref|XP_002517612.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543244|gb|EEF44776.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 794

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 106/239 (44%), Gaps = 33/239 (13%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P  A+Y  LIT SC   +VH A  ++EQ ++  L+P+  +   ++H   +  E+     +
Sbjct: 310 PDMATYNILITGSCSCGEVHKAEQLLEQAIKRGLLPNKVSYTPLIHNYCKQGEYLRALDL 369

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +     KP+  T+ ++I   +   + D A ++ + + E  ++P A++YN +M+G  +
Sbjct: 370 LIKMSERGHKPDLVTYAALIHGLIVAGEVDVALTVRNKMVEKGVLPDANIYNVLMSGLCK 429

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMA 188
           K  +  A ++L EM   NV PD+                                ++   
Sbjct: 430 KGRLPAAKVLLAEMLDQNVAPDA--------------------------------FITAT 457

Query: 189 LINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA 246
           L++ +   G+FE+A+++  L  E  +       +A++      G   DA++ ++ + + 
Sbjct: 458 LVDGFIRHGDFEEAKKLFELTIEKGIDPGVVGYNAMIKGYCKFGMMKDALLCFKRMIQG 516



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 84/199 (42%), Gaps = 3/199 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  LI       +V VAL V  +MV+  ++P     N ++    +       + +
Sbjct: 380 PDLVTYAALIHGLIVAGEVDVALTVRNKMVEKGVLPDANIYNVLMSGLCKKGRLPAAKVL 439

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +   N+ P++    +++   ++  DF+ A  L +   E  + P    YNA++ GY +
Sbjct: 440 LAEMLDQNVAPDAFITATLVDGFIRHGDFEEAKKLFELTIEKGIDPGVVGYNAMIKGYCK 499

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYV 185
              ++ AL+  K M Q    PD  T+S +I       D+   ++ +  +     +     
Sbjct: 500 FGMMKDALLCFKRMIQGLHSPDEFTYSTIIDGYIKMNDLHGALRMFGLMVKGACKPNVVT 559

Query: 186 FMALINAYTTCGEFEKARQ 204
           +  LIN +   G+  +A +
Sbjct: 560 YTLLINGFCLSGDINRAEK 578



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/286 (19%), Positives = 120/286 (41%), Gaps = 9/286 (3%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQ-GELVPSTETINSILHACEESYEFNL 64
           ++ P+  ++  +I+   D   V  AL+     ++    VP   + NS+L+   +  +  +
Sbjct: 96  DLMPTREAFSLVISVFADCGLVDRALEFYRTFIKIHHCVPDVFSCNSLLNVLVKHGKVEI 155

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
             ++Y  +   N + ++ T   M+    K    +  + L++       MP    YN ++ 
Sbjct: 156 ACKVYDEMVDRNGEVDNYTVCIMVKGLCKEGKVEDGWKLIEKRWGRGCMPNIVFYNTLID 215

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQI 181
           GY +K D + A ++ KE++     P  +T+  +I+    +   E + K   ++   G  +
Sbjct: 216 GYCKKGDTERANVLFKELKMKGFLPTVKTYGAIINGFCKKGKFEVVDKLLVEMSERGLDV 275

Query: 182 TKYVFMALINAYTTCG-EFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
           + +++  +I+A    G   E A  V    +          + L++   S G    A  + 
Sbjct: 276 SIHIYNNIIDAQFKHGCRIEAADTVGWMIKSGCDPDMATYNILITGSCSCGEVHKAEQLL 335

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGE----LNRLIQLLEEVHDPD 282
           E+  + G      +   LI +   +GE    L+ LI++ E  H PD
Sbjct: 336 EQAIKRGLLPNKVSYTPLIHNYCKQGEYLRALDLLIKMSERGHKPD 381



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 94/449 (20%), Positives = 159/449 (35%), Gaps = 69/449 (15%)

Query: 26  KVHVALDVVEQMV--QGELVPSTETINSILHACEESY---EFNLVRRIYPMICHHNLKPN 80
           KV +A  V ++MV   GE+   T  I  +   C+E      + L+ + +   C     PN
Sbjct: 152 KVEIACKVYDEMVDRNGEVDNYTVCI-MVKGLCKEGKVEDGWKLIEKRWGRGC----MPN 206

Query: 81  SETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLK 140
              + ++I    K  D + A  L  +LK    +PT   Y AI+ G+ +K   +    +L 
Sbjct: 207 IVFYNTLIDGYCKKGDTERANVLFKELKMKGFLPTVKTYGAIINGFCKKGKFEVVDKLLV 266

Query: 141 EMEQANVKPDSQTFSYLI-----HNCSNEE-DIIKYYEQLKSAGGQITKYVFMALINAYT 194
           EM +  +      ++ +I     H C  E  D + +   +  +G       +  LI    
Sbjct: 267 EMSERGLDVSIHIYNNIIDAQFKHGCRIEAADTVGW---MIKSGCDPDMATYNILITGSC 323

Query: 195 TCGEFEKARQVV-------------------------------LDAEIPVKSRSE----- 218
           +CGE  KA Q++                               LD  I +  R       
Sbjct: 324 SCGEVHKAEQLLEQAIKRGLLPNKVSYTPLIHNYCKQGEYLRALDLLIKMSERGHKPDLV 383

Query: 219 VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
             +AL+  L   G    A+ V  ++ E G   +      L+  L  +G L     LL E+
Sbjct: 384 TYAALIHGLIVAGEVDVALTVRNKMVEKGVLPDANIYNVLMSGLCKKGRLPAAKVLLAEM 443

Query: 279 HD----PDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIA 334
            D    PD ++     L+   +R      A  L +   +K  D  +       + +C+  
Sbjct: 444 LDQNVAPDAFITA--TLVDGFIRHGDFEEAKKLFELTIEKGIDPGVVGYNAMIKGYCKFG 501

Query: 335 TTDPPDVQIGLDLLQFIKDELGL-PPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLP 393
                       LL F +   GL  P       ++   +   DL  A  ++         
Sbjct: 502 MMKDA-------LLCFKRMIQGLHSPDEFTYSTIIDGYIKMNDLHGALRMFGLMVKGACK 554

Query: 394 YNVLSYLWMYKAFLASGNRKSASKLLSKM 422
            NV++Y  +   F  SG+   A K   +M
Sbjct: 555 PNVVTYTLLINGFCLSGDINRAEKTFKQM 583



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/124 (22%), Positives = 50/124 (40%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           +P   +Y  +I     +  +H AL +   MV+G   P+  T   +++    S + N   +
Sbjct: 519 SPDEFTYSTIIDGYIKMNDLHGALRMFGLMVKGACKPNVVTYTLLINGFCLSGDINRAEK 578

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
            +  +    LKPN  T+  +I    K  +   A S  + +     +P    YN +M G  
Sbjct: 579 TFKQMLSLRLKPNVVTYTILIGCFCKGVNLTKACSFFEQMLMEKCLPNDVTYNYLMNGLT 638

Query: 128 RKKD 131
              D
Sbjct: 639 NNVD 642



 Score = 38.9 bits (89), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 40/204 (19%), Positives = 86/204 (42%), Gaps = 16/204 (7%)

Query: 79  PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMV 138
           P+  T+ ++I   +K+ D   A  +   + +    P    Y  ++ G+    D+  A   
Sbjct: 520 PDEFTYSTIIDGYIKMNDLHGALRMFGLMVKGACKPNVVTYTLLINGFCLSGDINRAEKT 579

Query: 139 LKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTT 195
            K+M    +KP+  T++ LI       ++ K   ++EQ+           +  L+N  T 
Sbjct: 580 FKQMLSLRLKPNVVTYTILIGCFCKGVNLTKACSFFEQMLMEKCLPNDVTYNYLMNGLTN 639

Query: 196 CGEFEKARQ--------VVLDAEIPVKS-----RSEVKSALVSALASHGRTSDAIIVYEE 242
             +F  + Q        +VL++   + S     R+   ++++  L  H     A+ + ++
Sbjct: 640 NVDFVISNQRSEQTENSLVLESFGMMISDGWDRRAASYNSILICLCQHKMVKHALHLRDK 699

Query: 243 IKEAGCNLEPRAVIALIEHLNSEG 266
           +   G   +P +++AL+  L  EG
Sbjct: 700 MMSKGFLPDPVSLVALLHGLCLEG 723


>gi|297737331|emb|CBI26532.3| unnamed protein product [Vitis vinifera]
          Length = 441

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 142/351 (40%), Gaps = 41/351 (11%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA----CEES 59
           +L + P   +Y  L++     + +  A  V+ +M +  + P   T NS++ A    C  S
Sbjct: 35  RLGLLPDVVTYNTLLSAYSRFVGIDAAYSVIHRMKEAGISPDVITYNSLIAAATKRCLLS 94

Query: 60  YEFNLVRRI-----------YPMICHH----NLKPNSETFRSMISLNVKIKDFDSAYSLL 104
              +L   +           Y  + H+    NL P+S TF  MI+          A SL 
Sbjct: 95  RSLDLFEEMLRTGIRPDVWSYNSLMHYIILTNLLPSSSTFNIMINGLCNNGYTGYALSLY 154

Query: 105 DDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE 164
             L+    +P    YN ++ G  + + +  A  +L+E+ ++   PD+ T++ ++  C   
Sbjct: 155 RYLQRQGFVPELVTYNILINGLCKSRKLNAARRILRELGESGNVPDAITYTTVMKCCFRS 214

Query: 165 ---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS 221
              E   + + ++KS G     + + A+I A T  G  E+A  +     +   +RS++  
Sbjct: 215 RQFEQGFEIFSEMKSKGYAFDAFSYCAVIAALTKTGRLEEANDI-----MEQMARSDIDL 269

Query: 222 ALVS------ALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL----NSEGELNRL 271
            +VS          +G+      + +EI+E G   +      LI+ L    N EG L  L
Sbjct: 270 DIVSYNTVMNLYCRNGKLEATYKLLDEIEEHGLECDEYTHTILIDGLCKAGNVEGALRHL 329

Query: 272 IQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLK--QLKDKFKDDEM 320
             + +   D       C  +I    +  QL  A  +    ++KD F    M
Sbjct: 330 KNMTKMGFDSTLVAQNC--VIDGLCKVGQLDHAIKMFASMEVKDSFTYSSM 378



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 67/355 (18%), Positives = 142/355 (40%), Gaps = 38/355 (10%)

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
           K+   + A +++ D   + L+P    YN +++ Y R   +  A  V+  M++A + PD  
Sbjct: 19  KVGQLEKAEAVVIDGIRLGLLPDVVTYNTLLSAYSRFVGIDAAYSVIHRMKEAGISPDVI 78

Query: 153 TFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA 209
           T++ LI   +        +  +E++   G +   + + +L++             ++L  
Sbjct: 79  TYNSLIAAATKRCLLSRSLDLFEEMLRTGIRPDVWSYNSLMH------------YIILTN 126

Query: 210 EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN 269
            +P  S   +   +++ L ++G T  A+ +Y  ++  G   E      LI  L    +LN
Sbjct: 127 LLPSSSTFNI---MINGLCNNGYTGYALSLYRYLQRQGFVPELVTYNILINGLCKSRKLN 183

Query: 270 RLIQLLEEVHDPDYWMDGCCRLILH--CVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFS 327
              ++L E+ +     D      +   C R +Q     ++  ++K K         Y F 
Sbjct: 184 AARRILRELGESGNVPDAITYTTVMKCCFRSRQFEQGFEIFSEMKSK--------GYAFD 235

Query: 328 EI-FCQI--ATTDPPDVQIGLDLLQFIKD---ELGLPPSRKCLDFLLGACVNARDLKRAH 381
              +C +  A T    ++   D+++ +     +L +      ++     C N + L+  +
Sbjct: 236 AFSYCAVIAALTKTGRLEEANDIMEQMARSDIDLDIVSYNTVMNLY---CRNGK-LEATY 291

Query: 382 LIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQAC 436
            +  E E  GL  +  ++  +      +GN + A + L  M K       V Q C
Sbjct: 292 KLLDEIEEHGLECDEYTHTILIDGLCKAGNVEGALRHLKNMTKMGFDSTLVAQNC 346


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/276 (19%), Positives = 124/276 (44%), Gaps = 6/276 (2%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           PS  +Y  L+       +   +L + ++MV+   V    T + +++   +S + +    +
Sbjct: 596 PSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDV 655

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    ++P    +++++S  VK +  D A  + ++L+E +L+P   +YN ++ G  +
Sbjct: 656 FGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVK 715

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYV 185
              V  A  ++  M+  N+ PD  T++ L+         E+    + ++   G +     
Sbjct: 716 SNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVA 775

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEV--KSALVSALASHGRTSDAIIVYEEI 243
           + +L++     G+   A  ++  A    +   +V   S+L+ +L   GR  +A   +E  
Sbjct: 776 YTSLMDVLGKGGKLSHAL-IIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENS 834

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279
              GC        +LI+    +G ++R ++L EE+ 
Sbjct: 835 ISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQ 870



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 4/189 (2%)

Query: 96  DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFS 155
           +   A  + + +K     P+ +MYN ++    +      A++V  ++ Q  ++PD+QTF 
Sbjct: 232 NVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFR 291

Query: 156 YLIH--NCSNEED-IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIP 212
             +H  N S   D   +  +++  +G     + F  LI+A    G  ++A +     +  
Sbjct: 292 IFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNL 351

Query: 213 VKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRL 271
             S + V  + LV+ LA  GR  +A  V+ E+KE  C+ +  A   LI+ L   GE +  
Sbjct: 352 RCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMA 411

Query: 272 IQLLEEVHD 280
             L +E+ D
Sbjct: 412 CGLFKEMKD 420



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 85/423 (20%), Positives = 156/423 (36%), Gaps = 49/423 (11%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           L  +P+  +Y  L+       ++  A +V  +M +    P     N+++    ++ E ++
Sbjct: 351 LRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADM 410

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
              ++  +    L PN  T+  MIS+  K      A+ L  DLKE   +P    YN ++ 
Sbjct: 411 ACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLID 470

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKY 184
              +   +   L ++KEM    V+   +       N  +E                    
Sbjct: 471 VLGKGGQMDKVLAIIKEM----VEKGGECIISRDSNAGHE-------------------- 506

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEI 243
                       G  E A + V    +  KS  E+  + L+SA   +G   +A+ + E +
Sbjct: 507 ------------GTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVM 554

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILH----CVRFK 299
           K+  C         L++ L   G L+  + LL E+        GC   ++        F 
Sbjct: 555 KKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEK-----QGCEPSVVTYSSLMASFY 609

Query: 300 QLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPP 359
           +     + L    +  +   +A    +S +   +  +D  DV   LD+   +K+E G+ P
Sbjct: 610 KRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSD--DVDQALDVFGRMKEE-GMEP 666

Query: 360 SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLL 419
                  LL + V    +  A  I+ E + + L  +   Y  M    + S     A KL+
Sbjct: 667 LLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLV 726

Query: 420 SKM 422
             M
Sbjct: 727 DSM 729



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/251 (20%), Positives = 101/251 (40%), Gaps = 31/251 (12%)

Query: 28  HVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSM 87
           H A+ V  ++ Q  + P  +T    +H+   S   +        +    + P   TF  +
Sbjct: 269 HSAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVL 328

Query: 88  ISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANV 147
           I   VK  + D A    + +K +   P    Y  ++ G  +   ++ A  V  EM++ N 
Sbjct: 329 IDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNC 388

Query: 148 KPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVL 207
            PD+  ++ LI             + L  AG             A   CG F++ +   L
Sbjct: 389 SPDAIAYNTLI-------------DGLGKAG------------EADMACGLFKEMKDRGL 423

Query: 208 DAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
              +P        + ++S L   GR  +A  ++ ++KE G   +      LI+ L   G+
Sbjct: 424 ---VP---NLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQ 477

Query: 268 LNRLIQLLEEV 278
           +++++ +++E+
Sbjct: 478 MDKVLAIIKEM 488



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 103/250 (41%), Gaps = 16/250 (6%)

Query: 9    PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA------CEESYEF 62
            P   +Y  L+       K+  AL +   M +   VP   T +S++ +       EE+Y F
Sbjct: 771  PDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYF 830

Query: 63   NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
                  +         PN   + S+I    K    D A  L ++++     P    YN +
Sbjct: 831  ------FENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNL 884

Query: 123  MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGG 179
            ++G  +   +  A  +L+EME+    PD  T++ LI         ++   Y++++K  G 
Sbjct: 885  LSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGI 944

Query: 180  QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAII 238
                  F +LI +     +  +A ++    E    + S V  + L+  L   G+  +A +
Sbjct: 945  VPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAM 1004

Query: 239  VYEEIKEAGC 248
            ++ E+K  GC
Sbjct: 1005 IFHEMKVKGC 1014



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/248 (18%), Positives = 97/248 (39%), Gaps = 8/248 (3%)

Query: 45  STETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLL 104
           S   + S+L     +   +    I+  +      P++  +  ++ L VK   + SA  + 
Sbjct: 216 SMHLLTSLLRTFGSTNNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVF 275

Query: 105 DDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NC 161
             L +  + P A  +   +  + R   +  A   ++EM ++ + P   TF+ LI      
Sbjct: 276 GKLGQFRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKS 335

Query: 162 SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVK 220
            N ++  K++  +K+         +  L+N     G  E+A +V ++  E      +   
Sbjct: 336 GNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAY 395

Query: 221 SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           + L+  L   G    A  +++E+K+ G     R    +I  L   G      QL  ++ +
Sbjct: 396 NTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKE 455

Query: 281 ----PDYW 284
               PD +
Sbjct: 456 QGAVPDVF 463



 Score = 45.8 bits (107), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 62/149 (41%)

Query: 9    PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
            P+  +Y  L++      +++VA  ++E+M +   VP   T N ++    +    +     
Sbjct: 876  PNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESY 935

Query: 69   YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
            +  +    + P+  TF S+I    K+     A  L D ++E    P+   YN ++    R
Sbjct: 936  FKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGR 995

Query: 129  KKDVQGALMVLKEMEQANVKPDSQTFSYL 157
               V  A M+  EM+     PD  T   +
Sbjct: 996  AGKVHEAAMIFHEMKVKGCMPDGITIGIM 1024



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 38/206 (18%), Positives = 85/206 (41%), Gaps = 3/206 (1%)

Query: 3    AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
            AK    P   +Y  LI       +V  A    E  +     P+    +S++ +  +    
Sbjct: 800  AKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMV 859

Query: 63   NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
            +    ++  +      PN  T+ +++S   K    + A  LL++++++  +P    YN +
Sbjct: 860  DRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNIL 919

Query: 123  MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGG 179
            + G  +   V  A    K M++  + PD  TF+ LI +    + ++   + ++ ++  G 
Sbjct: 920  IDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGY 979

Query: 180  QITKYVFMALINAYTTCGEFEKARQV 205
              +   +  LI+     G+  +A  +
Sbjct: 980  NPSVVTYNVLIDILGRAGKVHEAAMI 1005


>gi|302785117|ref|XP_002974330.1| hypothetical protein SELMODRAFT_50864 [Selaginella moellendorffii]
 gi|300157928|gb|EFJ24552.1| hypothetical protein SELMODRAFT_50864 [Selaginella moellendorffii]
          Length = 720

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 134/297 (45%), Gaps = 16/297 (5%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A++V ++M Q           +++ A     +  +  +I+  +       +S    S+I+
Sbjct: 388 AVEVFQKMEQEGCRADKIVYVAVMEASRGVEDVKMAAKIHSRLSELGWCSDSAIQSSLIA 447

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           ++ K    ++A  + D ++E +    A  +NA++A Y R+ D +  L + + M+ A+V+P
Sbjct: 448 MHGKCGSVEAARRVFDAMEEKSRGSPA--WNAMIAAYSRRGDKEAVLELFQAMQAASVRP 505

Query: 150 DSQTFSYL--IHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV- 206
           D  TF  L  +    +  +       + S G +    V  AL+N  T  G+  +AR+V  
Sbjct: 506 DRATFLGLLAVGGSFSPSEASAVQHAILSTGMETDSLVGTALLNTLTRSGKVGEARRVFD 565

Query: 207 -LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
            LD    V   S     ++ A ASHG + +AI +++E++  G   +  A +A++   N  
Sbjct: 566 RLDKRDVVSWTS-----MMVAYASHGSSLEAIDLFQEMQLQGMEPDEVAFLAVLFACNHA 620

Query: 266 GELNRLIQLLEEV---HDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDE 319
           G   R       +   +D +   D  C ++    R  +L+ A DL+  +   FK DE
Sbjct: 621 GFFRRGWDYFASMRGDYDLEAGADHYCCVVDLLGRAGRLADAEDLIVSM--PFKPDE 675



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 109/235 (46%), Gaps = 11/235 (4%)

Query: 32  DVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLN 91
           + +E   Q ++VP      S+L AC  +      +RI+  I     + ++    +++ L 
Sbjct: 183 EAIELYKQIDVVPDKVIFASVLDACSSAMNLEEGKRIHARIVEGKFEIDTVVNNTLLDLY 242

Query: 92  VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA-NVKPD 150
                 + A ++   ++E      +  +N+I+  +      + AL +  EM++A   + D
Sbjct: 243 GMCGCLEEAKAVFHSMQEQGRDVVS--WNSIIRAHLHNDQPKEALGLFFEMQEACGPRQD 300

Query: 151 SQTFSYLIHNCS--NEEDII--KYYEQLKSAGG-QITKYVFMALINAYTTCGEFEKARQV 205
             ++   +  CS    + ++  K    L  A    I  YV  AL+  Y  CG+  +A+Q 
Sbjct: 301 RVSYVSALDACSAMGSDGLVHGKTLHGLILANRIHIDVYVGTALVTMYGRCGDVVEAKQ- 359

Query: 206 VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE 260
           V D  +P K+ +   ++++   +++G   +A+ V++++++ GC  +    +A++E
Sbjct: 360 VFDV-MPSKN-AVTWTSMIRGYSTNGFAREAVEVFQKMEQEGCRADKIVYVAVME 412



 Score = 39.3 bits (90), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 91/204 (44%), Gaps = 16/204 (7%)

Query: 51  SILHACEESYEFNLV--RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLK 108
           S L AC       LV  + ++ +I  + +  +     +++++  +  D   A  + D   
Sbjct: 306 SALDACSAMGSDGLVHGKTLHGLILANRIHIDVYVGTALVTMYGRCGDVVEAKQVFD--- 362

Query: 109 EMNLMPT--ASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED 166
              +MP+  A  + +++ GY      + A+ V ++MEQ   + D   +  ++      ED
Sbjct: 363 ---VMPSKNAVTWTSMIRGYSTNGFAREAVEVFQKMEQEGCRADKIVYVAVMEASRGVED 419

Query: 167 I---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSR-SEVKSA 222
           +    K + +L   G      +  +LI  +  CG  E AR+ V DA +  KSR S   +A
Sbjct: 420 VKMAAKIHSRLSELGWCSDSAIQSSLIAMHGKCGSVEAARR-VFDA-MEEKSRGSPAWNA 477

Query: 223 LVSALASHGRTSDAIIVYEEIKEA 246
           +++A +  G     + +++ ++ A
Sbjct: 478 MIAAYSRRGDKEAVLELFQAMQAA 501


>gi|224115398|ref|XP_002317023.1| predicted protein [Populus trichocarpa]
 gi|222860088|gb|EEE97635.1| predicted protein [Populus trichocarpa]
          Length = 455

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 120/276 (43%), Gaps = 39/276 (14%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P +ASY  L+   C    +  A+ +VE+M +     +T T NS++             
Sbjct: 16  IIPDAASYTFLVNNLCKRGNIGHAMQLVEKMEENGYPTNTVTYNSLVRG----------- 64

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
                +C H                    + + +  LLD L    L+P    Y+ ++   
Sbjct: 65  -----LCMHG-------------------NLNQSLQLLDKLMWKGLVPNEFTYSFLLEAA 100

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITK 183
           ++++ V  A+ +L E+     +P+  +++ L+     E   E+ I+++  L S G     
Sbjct: 101 YKERGVNEAMKLLDEIIAKGWQPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFNPNV 160

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEE 242
             +  ++ +    G +E+A Q++ + +   +S S V  + L+ +LA HGR   A  V +E
Sbjct: 161 VSYNIILRSLCHEGRWEEANQLLAEMDSEERSPSLVTYNILIGSLAFHGRIEHAFEVLDE 220

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           +  A           +I HL  EG+L+ +I+ L+++
Sbjct: 221 MVRASFKPSATTYNPIIAHLCKEGKLDLVIKCLDQM 256



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 3/154 (1%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSIL-HACEESYEFNL 64
           E +PS  +Y  LI       ++  A +V+++MV+    PS  T N I+ H C+E  + +L
Sbjct: 190 ERSPSLVTYNILIGSLAFHGRIEHAFEVLDEMVRASFKPSATTYNPIIAHLCKEG-KLDL 248

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
           V +    + HH   PN  TF + I++  K      A+S++ +L       T   Y  ++ 
Sbjct: 249 VIKCLDQMIHHRCNPNEGTFNA-IAVLCKQGRVPEAFSIIQNLGNKQRSSTHDFYKGVIT 307

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
              RK +   A  +L EM +    PD  T+S LI
Sbjct: 308 SLCRKGNTYPAFQLLYEMTKFGFVPDPYTYSSLI 341


>gi|168000535|ref|XP_001752971.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695670|gb|EDQ82012.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 391

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/290 (20%), Positives = 126/290 (43%), Gaps = 11/290 (3%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           +KL    +   Y K+I+++  + +  +A D+ ++M +  +  +  + N+++H+   + E 
Sbjct: 8   SKLGWEANPKEYAKMISFAGRISQPQLAADLFDEMEKRGIKKTAVSFNALIHSYGRNNEA 67

Query: 63  NLVRRIYP-MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
           +   +++  M   ++ +P   T+ ++IS+  ++   +    L  D KE    P    YNA
Sbjct: 68  HKALQLFEDMKATNDCQPTLVTYNTLISMYSRMGATEEMKKLFLDCKEAGFSPDRHTYNA 127

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPD-----SQTFSYLIHNCSNEEDIIKYYEQLKS 176
           ++ GY R   +        E++    K D     +Q   Y   N  N+ + +  +  +++
Sbjct: 128 LIWGYMRAGQLSQMEETFNELQAGECKADVITYNAQIIGYARANAVNKMEAV--FSSMQA 185

Query: 177 AGGQITKYVFMALINAYTTCGEFEKARQV--VLDAEIPVKSRSEVKSALVSALASHGRTS 234
           AG  I   V   LI  Y+    FEK      ++D    V+  S V S ++ + A   +  
Sbjct: 186 AGIPINAMVGEILIEVYSRTKHFEKMENALKIMDVTPGVQYGSRVHSMVIESYADANKLD 245

Query: 235 D-AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY 283
           +    +    +       P+++ ALI   +  GE  RL + +E V    +
Sbjct: 246 EMEAAISRMFQNKRMFSSPKSLHALIMAYSRAGEYGRLAKTMEVVKGAGW 295


>gi|302775192|ref|XP_002971013.1| hypothetical protein SELMODRAFT_63047 [Selaginella moellendorffii]
 gi|300160995|gb|EFJ27611.1| hypothetical protein SELMODRAFT_63047 [Selaginella moellendorffii]
          Length = 413

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 96/198 (48%), Gaps = 9/198 (4%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y+ L+       +  VAL   ++M++    P+  T N ++ A  ++ ++ +V  + P + 
Sbjct: 171 YRGLVCVCATQGRWLVALTFFKEMLESGCKPTIVTYNVLMRALGKAGKWEIVLDLLPRMK 230

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
              + P+  T  ++++  +  ++FD A      +K   +     +YN I+    + K+ +
Sbjct: 231 ASGVAPDFYTVNAVLNGLIAAREFDRAMLFFHSVKSSGMKLDREVYNVILVACQKSKNWE 290

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALI 190
            AL +++EMEQ  + P+  TF  L+  C N + +   ++ YE +K        +V  +LI
Sbjct: 291 AALSLVQEMEQTGIAPNEVTFGPLLVACENAKQVEVALRLYEHMKQRRCVPNTHVVASLI 350

Query: 191 NAYTTCGE---FEKARQV 205
            A   CG+   +++AR +
Sbjct: 351 RA---CGKELMWQQARNI 365



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/197 (20%), Positives = 92/197 (46%), Gaps = 2/197 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  L+       K  + LD++ +M    + P   T+N++L+    + EF+     
Sbjct: 201 PTIVTYNVLMRALGKAGKWEIVLDLLPRMKASGVAPDFYTVNAVLNGLIAAREFDRAMLF 260

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    +K + E +  ++    K K++++A SL+ ++++  + P    +  ++     
Sbjct: 261 FHSVKSSGMKLDREVYNVILVACQKSKNWEAALSLVQEMEQTGIAPNEVTFGPLLVACEN 320

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMA 188
            K V+ AL + + M+Q    P++   + LI  C  E    +     + +   +  YV+ A
Sbjct: 321 AKQVEVALRLYEHMKQRRCVPNTHVVASLIRACGKELMWQQARNIYRVSSPNV--YVYNA 378

Query: 189 LINAYTTCGEFEKARQV 205
           LI+AY    ++  A++V
Sbjct: 379 LIDAYCRSQKYHLAKKV 395



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 72/379 (18%), Positives = 160/379 (42%), Gaps = 29/379 (7%)

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLK-EMNLMPTASMYNAIMAGY 126
           I+  + H  + P   T+ +++     ++ ++SA+ +  +L    +L P  +MYN ++A Y
Sbjct: 49  IFERMKHDRVAPTLYTYTAVMRALSHVQGWESAHRMFSELVVHGSLKPDVAMYNTMLAAY 108

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC--SNEEDI-IKYYEQLKSAGGQITK 183
            R   ++  L   + M++     +  T+  L+     +N+ D+ +  Y ++ S G + T 
Sbjct: 109 GRGHKLERVLQTWERMQKEGCVENVGTYCLLVSTFVQTNQADLALDAYARMNSQGLKATD 168

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
            ++  L+    T G +  A     +  E   K      + L+ AL   G+    + +   
Sbjct: 169 GIYRGLVCVCATQGRWLVALTFFKEMLESGCKPTIVTYNVLMRALGKAGKWEIVLDLLPR 228

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCR--LILHCVRFKQ 300
           +K +G   +   V A++  L +  E +R +     V      +D      +++ C + K 
Sbjct: 229 MKASGVAPDFYTVNAVLNGLIAAREFDRAMLFFHSVKSSGMKLDREVYNVILVACQKSKN 288

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS 360
             +A  L+++++   +      E  F  +   +A  +   V++ L L + +K    +P +
Sbjct: 289 WEAALSLVQEME---QTGIAPNEVTFGPLL--VACENAKQVEVALRLYEHMKQRRCVPNT 343

Query: 361 RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLS-YLWMYKAFLASGNRKSASKLL 419
              +  L+ AC          L+W++  N    Y V S  +++Y A + +  R     L 
Sbjct: 344 H-VVASLIRACGK-------ELMWQQARNI---YRVSSPNVYVYNALIDAYCRSQKYHLA 392

Query: 420 SKMPKDDPHVRFVIQACKQ 438
            K+ +     R + + C++
Sbjct: 393 KKVDR-----RMIEEGCQR 406



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 61/316 (19%), Positives = 132/316 (41%), Gaps = 29/316 (9%)

Query: 80  NSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVL 139
           ++  + S+I+  +K  D   A ++ + +K   + PT   Y A+M      +  + A  + 
Sbjct: 26  HANAYNSLITGLMKDGDEADAIAIFERMKHDRVAPTLYTYTAVMRALSHVQGWESAHRMF 85

Query: 140 KEM-EQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTT 195
            E+    ++KPD   ++ ++         E +++ +E+++  G       +  L++ +  
Sbjct: 86  SELVVHGSLKPDVAMYNTMLAAYGRGHKLERVLQTWERMQKEGCVENVGTYCLLVSTFVQ 145

Query: 196 CGEFEKARQVVLDAEIPVKSRS-----EVKSALVSALASHGRTSDAIIVYEEIKEAGCNL 250
             + + A    LDA   + S+       +   LV   A+ GR   A+  ++E+ E+GC  
Sbjct: 146 TNQADLA----LDAYARMNSQGLKATDGIYRGLVCVCATQGRWLVALTFFKEMLESGCKP 201

Query: 251 EPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDYWMDGCCRLILHCVRFKQLSSATD 306
                  L+  L   G+   ++ LL  +      PD++      ++   +  ++   A  
Sbjct: 202 TIVTYNVLMRALGKAGKWEIVLDLLPRMKASGVAPDFYTVNA--VLNGLIAAREFDRAML 259

Query: 307 LLKQLKDKFK--DDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCL 364
               +K      D E+   Y+   + CQ       + +  L L+Q + ++ G+ P+    
Sbjct: 260 FFHSVKSSGMKLDREV---YNVILVACQ----KSKNWEAALSLVQEM-EQTGIAPNEVTF 311

Query: 365 DFLLGACVNARDLKRA 380
             LL AC NA+ ++ A
Sbjct: 312 GPLLVACENAKQVEVA 327


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 115/279 (41%), Gaps = 39/279 (13%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P + ++  +I   C       AL + E M   ++ P +  + ++L AC  +   +  R I
Sbjct: 185 PDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTI 244

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM---------- 118
           +  +  +    +S    ++I++       D A  + D L   +L+ + +M          
Sbjct: 245 HEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMV 304

Query: 119 -----------------YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC 161
                            ++A+++GY      Q AL +  EM Q    PD  T   +I  C
Sbjct: 305 KDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISAC 364

Query: 162 SN-----EEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSR 216
           S+     + + I  Y      G  ++  V  ALI+ Y  CG   KAR+V     +P K+ 
Sbjct: 365 SHVGALAQANWIHTYVDRSGFGRALS--VNNALIDMYAKCGNLVKAREVF--ENMPRKNV 420

Query: 217 SEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255
               S++++A A HG    AI ++  +KE   N+EP  V
Sbjct: 421 ISW-SSMINAFAMHGNADSAIKLFRRMKEV--NIEPNGV 456


>gi|168024390|ref|XP_001764719.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684013|gb|EDQ70418.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1020

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/273 (20%), Positives = 123/273 (45%), Gaps = 6/273 (2%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y  LI+      KV +   ++ +M    +  +  T  +++  C  + +       Y ++ 
Sbjct: 344 YTTLISACSKAGKVDLLFQILHEMDVAGVEANVHTFGAMIDGCARAGQLPKAFGAYGIMI 403

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKE--MNLMPTASMYNAIMAGYFRKKD 131
             ++KP+   F ++I+   ++     A+ +L D+K     + P    Y A+++   +  +
Sbjct: 404 SKDVKPDRVIFNTLINACSRVGAVQRAFDVLADMKSEATPVKPDHVTYGALISACAKGGE 463

Query: 132 VQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMA 188
           V  AL V + M + +VK     ++  +H CS + D+   +  Y+ L   G +  +  F A
Sbjct: 464 VGRALEVYQSMRENDVKGFLACYTAAVHACSQKGDLDYALAIYDDLLKDGVKPDEVFFSA 523

Query: 189 LINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           L++A    G+ +KA  ++ +  +  +K  + V S+L+   ++ G     + VYE I+ + 
Sbjct: 524 LVDAAGHSGDVDKAFSILDIMRKSGMKPGAVVYSSLMGVCSNLGEWEKGLEVYEGIRSSK 583

Query: 248 CNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
                    AL+  L    + +R + +L ++ D
Sbjct: 584 LRPTVSTYNALMTALCEAKQFDRALSVLNDLKD 616



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 78/360 (21%), Positives = 150/360 (41%), Gaps = 29/360 (8%)

Query: 57  EESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTA 116
           E+++ F  + R+Y  + H+ +         ++S+    KD D A  +L  ++        
Sbjct: 291 EDAFTFAKIMRVYSTLQHYTM---------LLSVCCHAKDIDGALRVLALVESRGFKADC 341

Query: 117 SMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQ 173
             Y  +++   +   V     +L EM+ A V+ +  TF  +I  C+    + K    Y  
Sbjct: 342 VFYTTLISACSKAGKVDLLFQILHEMDVAGVEANVHTFGAMIDGCARAGQLPKAFGAYGI 401

Query: 174 LKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAE---IPVKSRSEVKSALVSALASH 230
           + S   +  + +F  LINA +  G  ++A  V+ D +    PVK       AL+SA A  
Sbjct: 402 MISKDVKPDRVIFNTLINACSRVGAVQRAFDVLADMKSEATPVKPDHVTYGALISACAKG 461

Query: 231 GRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLI----QLLEEVHDPD-YWM 285
           G    A+ VY+ ++E           A +   + +G+L+  +     LL++   PD  + 
Sbjct: 462 GEVGRALEVYQSMRENDVKGFLACYTAAVHACSQKGDLDYALAIYDDLLKDGVKPDEVFF 521

Query: 286 DGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGL 345
                   H     +  S  D++++   K      A+ Y      C    ++  + + GL
Sbjct: 522 SALVDAAGHSGDVDKAFSILDIMRKSGMK----PGAVVYSSLMGVC----SNLGEWEKGL 573

Query: 346 DLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKA 405
           ++ + I+    L P+    + L+ A   A+   RA  +  + ++AG   N +SY  + KA
Sbjct: 574 EVYEGIRSS-KLRPTVSTYNALMTALCEAKQFDRALSVLNDLKDAGRTPNQVSYSILLKA 632



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 113/248 (45%), Gaps = 14/248 (5%)

Query: 37  MVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHN-----LKPNSETFRSMISLN 91
           M+  ++ P     N++++AC        V+R + ++         +KP+  T+ ++IS  
Sbjct: 402 MISKDVKPDRVIFNTLINACSR---VGAVQRAFDVLADMKSEATPVKPDHVTYGALISAC 458

Query: 92  VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151
            K  +   A  +   ++E ++    + Y A +    +K D+  AL +  ++ +  VKPD 
Sbjct: 459 AKGGEVGRALEVYQSMRENDVKGFLACYTAAVHACSQKGDLDYALAIYDDLLKDGVKPDE 518

Query: 152 QTFSYLIHNCSNEEDIIKYYEQL---KSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
             FS L+    +  D+ K +  L   + +G +    V+ +L+   +  GE+EK  +V  +
Sbjct: 519 VFFSALVDAAGHSGDVDKAFSILDIMRKSGMKPGAVVYSSLMGVCSNLGEWEKGLEV-YE 577

Query: 209 AEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
                K R  V +  AL++AL    +   A+ V  ++K+AG      +   L++    EG
Sbjct: 578 GIRSSKLRPTVSTYNALMTALCEAKQFDRALSVLNDLKDAGRTPNQVSYSILLKACEREG 637

Query: 267 ELNRLIQL 274
           + +  + L
Sbjct: 638 KADMALDL 645



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 53/251 (21%), Positives = 108/251 (43%), Gaps = 35/251 (13%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  LI+      +V  AL+V + M + ++        + +HAC +  + +   
Sbjct: 444 VKPDHVTYGALISACAKGGEVGRALEVYQSMRENDVKGFLACYTAAVHACSQKGDLDYAL 503

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            IY  +    +KP+   F +++       D D A+S+LD +++  + P A +Y+++M   
Sbjct: 504 AIYDDLLKDGVKPDEVFFSALVDAAGHSGDVDKAFSILDIMRKSGMKPGAVVYSSLM--- 560

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVF 186
                  G    L E E+                       ++ YE ++S+  + T   +
Sbjct: 561 -------GVCSNLGEWEKG----------------------LEVYEGIRSSKLRPTVSTY 591

Query: 187 MALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKE 245
            AL+ A     +F++A  V+ D +   ++ ++V  S L+ A    G+   A+ +Y   + 
Sbjct: 592 NALMTALCEAKQFDRALSVLNDLKDAGRTPNQVSYSILLKACEREGKADMALDLYTTARA 651

Query: 246 AGCNLEPRAVI 256
            G  ++P  VI
Sbjct: 652 EG--IKPNLVI 660



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/231 (20%), Positives = 96/231 (41%), Gaps = 6/231 (2%)

Query: 52  ILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMN 111
           +L  C  + + +   R+  ++     K +   + ++IS   K    D  + +L ++    
Sbjct: 312 LLSVCCHAKDIDGALRVLALVESRGFKADCVFYTTLISACSKAGKVDLLFQILHEMDVAG 371

Query: 112 LMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY 171
           +      + A++ G  R   +  A      M   +VKPD   F+ LI+ CS    + + +
Sbjct: 372 VEANVHTFGAMIDGCARAGQLPKAFGAYGIMISKDVKPDRVIFNTLINACSRVGAVQRAF 431

Query: 172 EQLKSAGGQITK-----YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVS 225
           + L     + T        + ALI+A    GE  +A +V     E  VK      +A V 
Sbjct: 432 DVLADMKSEATPVKPDHVTYGALISACAKGGEVGRALEVYQSMRENDVKGFLACYTAAVH 491

Query: 226 ALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276
           A +  G    A+ +Y+++ + G   +     AL++     G++++   +L+
Sbjct: 492 ACSQKGDLDYALAIYDDLLKDGVKPDEVFFSALVDAAGHSGDVDKAFSILD 542


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 110/227 (48%), Gaps = 14/227 (6%)

Query: 36  QMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIK 95
           ++++  ++P   T  S+L AC  +      R+++ +     L  N     ++I++  + +
Sbjct: 119 EILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECE 178

Query: 96  DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFS 155
           D DSA  + D + E    P    YNA++ GY R+     AL + +EM+   +KP+  T  
Sbjct: 179 DVDSARCVFDRIVE----PCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLL 234

Query: 156 YLIHNCS--NEEDIIKYYEQLKSAGGQITKYVFM--ALINAYTTCGEFEKARQVVLDAEI 211
            ++ +C+     D+ K+  +  +      KYV +  ALI+ +  CG  + A  +    E 
Sbjct: 235 SVLSSCALLGSLDLGKWIHKY-AKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIF---EK 290

Query: 212 PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
                ++  SA++ A A+HG+   +++++E ++    N++P  +  L
Sbjct: 291 MRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSE--NVQPDEITFL 335



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 108/243 (44%), Gaps = 10/243 (4%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P    Y  +IT      + + AL +  +M    L P+  T+ S+L +C      +L +
Sbjct: 191 VEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGK 250

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            I+     H+     +   ++I +  K    D A S+ + ++  +       ++A++  Y
Sbjct: 251 WIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKD----TQAWSAMIVAY 306

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITK 183
                 + ++++ + M   NV+PD  TF  L++ CS+    E+  KY+ Q+ S  G +  
Sbjct: 307 ANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPS 366

Query: 184 YV-FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
              + ++++  +  G  E A + +   ++P+     +   L++A +SH     A  V E 
Sbjct: 367 IKHYGSMVDLLSRAGNLEDAYEFI--DKLPISPTPMLWRILLAACSSHNNLDLAEKVSER 424

Query: 243 IKE 245
           I E
Sbjct: 425 IFE 427



 Score = 40.0 bits (92), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 78/374 (20%), Positives = 151/374 (40%), Gaps = 37/374 (9%)

Query: 98  DSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYL 157
           +S+ S    L E    P   ++N++  GY R  +      +  E+ +  + PD+ TF  L
Sbjct: 76  ESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSL 135

Query: 158 IHNCSNEEDIIKYYEQLKS-------AGGQITKYVFMALINAYTTCGEFEKARQVVLDAE 210
           +  C+    + K  E+ +         G     YV   LIN YT C + + AR V    +
Sbjct: 136 LKACA----VAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVF---D 188

Query: 211 IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG---- 266
             V+      +A+++  A   R ++A+ ++ E++  G  L+P   I L+  L+S      
Sbjct: 189 RIVEPCVVCYNAMITGYARRNRPNEALSLFREMQ--GKYLKPNE-ITLLSVLSSCALLGS 245

Query: 267 -ELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYH 325
            +L + I    + H    ++     LI    +   L  A  + ++++ K      AM   
Sbjct: 246 LDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAM--- 302

Query: 326 FSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWK 385
                  +A  +    +  + + + ++ E  + P       LL AC +   ++     + 
Sbjct: 303 ------IVAYANHGKAEKSMLMFERMRSE-NVQPDEITFLGLLNACSHTGRVEEGRKYFS 355

Query: 386 E-YENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMP-KDDPHV-RFVIQACKQTYTI 442
           +     G+  ++  Y  M      +GN + A + + K+P    P + R ++ AC     +
Sbjct: 356 QMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNL 415

Query: 443 PSLQK--ERGFEKD 454
              +K  ER FE D
Sbjct: 416 DLAEKVSERIFELD 429


>gi|414868449|tpg|DAA47006.1| TPA: hypothetical protein ZEAMMB73_127498 [Zea mays]
          Length = 870

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 120/278 (43%), Gaps = 7/278 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHV--ALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           + P++ SY  +I  +C    V +   L    QM+Q  L P  +T NS+L AC  +     
Sbjct: 275 LRPTTVSYNAVID-ACGKGGVDLRFTLGYFRQMLQDGLCPDRKTFNSLLAACSRAGHLED 333

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
            R ++  + H     +  T+ + +    K  +   A  ++ D++  N  P    Y+ +M 
Sbjct: 334 ARTVFDEMIHLGSGRDIYTYNTFVDAICKCGNMGLALQVVLDMEANNAKPNVVTYSTLMD 393

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQI 181
           G+ + +    AL + ++M+   ++ D   ++ L+         ++I    E+++  G + 
Sbjct: 394 GFSKLEKYDEALKLREKMKSLRIQLDRVCYNTLLAIYVKTGKYDEIATVCEEMEKLGIEK 453

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVY 240
               + +LIN Y   G  +    +V D      + S +  S L+   +  G   DA  VY
Sbjct: 454 DTVTYNSLINGYGKQGRLDMVAFLVQDMRAQGVAPSVLTYSTLIDIYSKAGMHGDAFNVY 513

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            + KE+G   +     + I+ L   G +   + LL+E+
Sbjct: 514 LDFKESGLKADVVLFSSFIDTLAKNGLVECALSLLDEM 551



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 104/223 (46%), Gaps = 5/223 (2%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHAC-EESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
           A+ V+E M    L P+T + N+++ AC +   +       +  +    L P+ +TF S++
Sbjct: 263 AMGVLESMKGAGLRPTTVSYNAVIDACGKGGVDLRFTLGYFRQMLQDGLCPDRKTFNSLL 322

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
           +   +    + A ++ D++  +        YN  +    +  ++  AL V+ +ME  N K
Sbjct: 323 AACSRAGHLEDARTVFDEMIHLGSGRDIYTYNTFVDAICKCGNMGLALQVVLDMEANNAK 382

Query: 149 PDSQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           P+  T+S L+   S  E   + +K  E++KS   Q+ +  +  L+  Y   G++++   V
Sbjct: 383 PNVVTYSTLMDGFSKLEKYDEALKLREKMKSLRIQLDRVCYNTLLAIYVKTGKYDEIATV 442

Query: 206 VLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
             + E + ++  +   ++L++     GR      + ++++  G
Sbjct: 443 CEEMEKLGIEKDTVTYNSLINGYGKQGRLDMVAFLVQDMRAQG 485



 Score = 40.0 bits (92), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 27/126 (21%), Positives = 61/126 (48%)

Query: 33  VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92
           V E+M +  +   T T NS+++   +    ++V  +   +    + P+  T+ ++I +  
Sbjct: 442 VCEEMEKLGIEKDTVTYNSLINGYGKQGRLDMVAFLVQDMRAQGVAPSVLTYSTLIDIYS 501

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
           K      A+++  D KE  L     ++++ +    +   V+ AL +L EM +  +KP+  
Sbjct: 502 KAGMHGDAFNVYLDFKESGLKADVVLFSSFIDTLAKNGLVECALSLLDEMMKMGIKPNVV 561

Query: 153 TFSYLI 158
           T++ +I
Sbjct: 562 TYNTII 567


>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 111/251 (44%), Gaps = 10/251 (3%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K    P   +Y  LI   C   K+  A  +  +M +  L+P+     +++H    + + +
Sbjct: 303 KSRTRPDVFTYSALINALCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQID 362

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
           L++  Y  +    L+P+   + ++++   K  D  +A +++D +    L P    Y  ++
Sbjct: 363 LMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLI 422

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKS---AGGQ 180
            G+ R  DV  AL + KEM+Q  ++ D   FS LI     E  +I     L+    AG +
Sbjct: 423 DGFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAERALREMLRAGMK 482

Query: 181 ITKYVFMALINAYTTCGE----FEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDA 236
                +  +++A+   G+    F+  +++  D  IP        + L++ L   G+  +A
Sbjct: 483 PDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHIP---NVVTYNVLLNGLCKLGQMKNA 539

Query: 237 IIVYEEIKEAG 247
            ++ + +   G
Sbjct: 540 DMLLDAMLNVG 550



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 107/239 (44%), Gaps = 15/239 (6%)

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           ++++  I   +L+P   +F ++I+   K+ + D  + L   +++    P    Y+A++  
Sbjct: 260 QKVFDEITKRSLRPTVVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTYSALINA 319

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS--NEEDIIK-YYEQLKSAGGQIT 182
             ++  + GA  +  EM +  + P+   F+ LIH  S   + D++K  Y+++ S G Q  
Sbjct: 320 LCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPD 379

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE--VKSALVSALASHGRTSDAIIVY 240
             ++  L+N +   G+   AR +V D  I    R +    + L+      G    A+ + 
Sbjct: 380 IVLYNTLVNGFCKNGDLVAARNIV-DGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIR 438

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGEL----NRLIQLLEEVHDPD-----YWMDGCCR 290
           +E+ + G  L+     ALI  +  EG +      L ++L     PD       MD  C+
Sbjct: 439 KEMDQNGIELDRVGFSALICGMCKEGRVIDAERALREMLRAGMKPDDVTYTMMMDAFCK 497



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/293 (19%), Positives = 124/293 (42%), Gaps = 30/293 (10%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
            K  + P+  S+  LI   C +  + V   +   M +    P   T +++++A  +  + 
Sbjct: 267 TKRSLRPTVVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTYSALINALCKENKM 326

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           +   R++  +C   L PN   F ++I  + +    D        +    L P   +YN +
Sbjct: 327 DGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTL 386

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGG 179
           + G+ +  D+  A  ++  M +  ++PD  T++ LI       D+   ++  +++   G 
Sbjct: 387 VNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGI 446

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
           ++ +  F ALI     CG  ++ R  V+DAE           AL   L +  +  D  + 
Sbjct: 447 ELDRVGFSALI-----CGMCKEGR--VIDAE----------RALREMLRAGMKPDD--VT 487

Query: 240 YEEIKEAGCNL-EPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRL 291
           Y  + +A C   + +    L++ + S+G +  ++         +  ++G C+L
Sbjct: 488 YTMMMDAFCKKGDAQTGFKLLKEMQSDGHIPNVVTY-------NVLLNGLCKL 533



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 76/173 (43%), Gaps = 2/173 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           + P   +Y  LI   C    V  AL++ ++M Q  +       ++++   C+E    +  
Sbjct: 411 LRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAE 470

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           R +  M+    +KP+  T+  M+    K  D  + + LL +++    +P    YN ++ G
Sbjct: 471 RALREML-RAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHIPNVVTYNVLLNG 529

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAG 178
             +   ++ A M+L  M    V PD  T++ L+       +  K+Y+Q    G
Sbjct: 530 LCKLGQMKNADMLLDAMLNVGVVPDDITYNTLLEGHHRHANASKHYKQKPEIG 582


>gi|356528730|ref|XP_003532952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g73710-like [Glycine max]
          Length = 963

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 87/184 (47%), Gaps = 4/184 (2%)

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           ++  + +H   PN  T+ S++ +       D A  L+D+++E+   P    ++A++  Y 
Sbjct: 503 LFKGMKNHGTWPNESTYNSLVQMLSGADLVDQAMDLVDEMQEVGFKPPCQTFSAVIGCYA 562

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKY 184
           R   +  A+ V KEM +  VKP+   +  LI+  +     E+ +KY+  ++ +G      
Sbjct: 563 RLGQLSDAVSVFKEMVRTGVKPNEVVYGSLINGFAEHGSLEEALKYFHMMEESGLSSNLV 622

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEI 243
           V  +L+ +Y   G  E A+ +    +        V  ++++   A  G  S+A + +E +
Sbjct: 623 VLTSLLKSYCKVGNLEGAKAIYERMKNMEGGLDLVACNSMIGLFADLGLVSEAKLAFENL 682

Query: 244 KEAG 247
           +E G
Sbjct: 683 REMG 686



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 61/309 (19%), Positives = 134/309 (43%), Gaps = 10/309 (3%)

Query: 11  SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYP 70
           S +Y  LI       ++  A +V  +M++  +     T N+++  C    +      +  
Sbjct: 271 SNTYNVLIDLYGKAGRLSEAAEVFAEMLKAGVAVDVWTFNTMIFVCGSQGDLAEAEALLG 330

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
           M+    + P+++TF   +SL  + +D  +A      ++E  L P    Y A++    RK 
Sbjct: 331 MMEEKGVAPDTKTFNIFLSLYAEARDIGAAVLCYKRIREAGLCPDEVTYRALLGVLCRKN 390

Query: 131 DVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK--SAGGQITKYVFMA 188
            V+    ++ EME+A V  D      ++     E D+ K ++ LK     G+++  +  A
Sbjct: 391 MVREVEDLIDEMERAFVSVDEHCVPGIVEMYVGEGDVDKAFDLLKKFQVNGEMSSNIRSA 450

Query: 189 LINAYTTCGEFEKARQVVLDAEIPVKSRSEVK--SALVSALASHGRTSDAIIVYEEIKEA 246
           +++ +   G +E+A  V          + +V   + ++ A         AI +++ +K  
Sbjct: 451 IMDVFAEKGLWEEAEDVFYRGRNLAGRKRDVLECNVMIKAYGKAKLYDKAISLFKGMKNH 510

Query: 247 GCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRL---ILHC-VRFKQLS 302
           G         +L++ L+    +++ + L++E+ +  +     C+    ++ C  R  QLS
Sbjct: 511 GTWPNESTYNSLVQMLSGADLVDQAMDLVDEMQEVGF--KPPCQTFSAVIGCYARLGQLS 568

Query: 303 SATDLLKQL 311
            A  + K++
Sbjct: 569 DAVSVFKEM 577



 Score = 45.8 bits (107), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 90/238 (37%), Gaps = 35/238 (14%)

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           MI    K K +D A SL   +K     P  S YN+++        V  A+ ++ EM++  
Sbjct: 487 MIKAYGKAKLYDKAISLFKGMKNHGTWPNESTYNSLVQMLSGADLVDQAMDLVDEMQEVG 546

Query: 147 VKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
            KP  QTFS                                A+I  Y   G+   A  V 
Sbjct: 547 FKPPCQTFS--------------------------------AVIGCYARLGQLSDAVSVF 574

Query: 207 LD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
            +     VK    V  +L++  A HG   +A+  +  ++E+G +     + +L++     
Sbjct: 575 KEMVRTGVKPNEVVYGSLINGFAEHGSLEEALKYFHMMEESGLSSNLVVLTSLLKSYCKV 634

Query: 266 GELNRLIQLLEEVHDPDYWMD--GCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMA 321
           G L     + E + + +  +D   C  +I        +S A    + L++  + D ++
Sbjct: 635 GNLEGAKAIYERMKNMEGGLDLVACNSMIGLFADLGLVSEAKLAFENLREMGRADAIS 692



 Score = 38.5 bits (88), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 7/121 (5%)

Query: 116 ASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE----EDIIKYY 171
           +S +N  +  Y    D+  AL +  +M   ++ PD  T+ YL+  C  +    E + + Y
Sbjct: 828 SSAFNVAIYAYGSAGDINKALNIYMKMRDEHLGPDLVTYIYLV-GCYGKAGMVEGVKQIY 886

Query: 172 EQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSR--SEVKSALVSALAS 229
            QL+    +  + +F A+I+AY  C   + A  V  + +    S+  SE++S    A  S
Sbjct: 887 SQLEYGEIESNESLFKAIIDAYKICNRKDLAELVSQEMKFTFNSKEHSEIESETEYATGS 946

Query: 230 H 230
            
Sbjct: 947 E 947


>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 739

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 110/246 (44%), Gaps = 4/246 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  LI   C   ++  A  +++ M    LVP+  T + ++ A  +       +
Sbjct: 278 LVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQ 337

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +    +K N   + S+I    K   F +A  L+  L     +P A  Y++++ G 
Sbjct: 338 LLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGL 397

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITK 183
            R+K++  A++VL +M +  V+P   T++ +I     E   +   K  +++ +AG +   
Sbjct: 398 CRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDV 457

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           + +   + +Y   G  E A  ++L   +  V       +AL+   A+ G TS A   ++ 
Sbjct: 458 FTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAFSTFKH 517

Query: 243 IKEAGC 248
           +   GC
Sbjct: 518 MVANGC 523



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/265 (20%), Positives = 105/265 (39%), Gaps = 10/265 (3%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
            P    Y  ++   C   +   A  ++   +     P+    N+++       +  L   
Sbjct: 174 APDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVD 233

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           ++  +  +   PN  T+  +IS   K +  D A  L   + +  L+P    Y A++ G  
Sbjct: 234 VFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQC 293

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKS---AGGQITKY 184
               +  A  +L+ ME + + P+  T S LI      E + +    L S    G ++ + 
Sbjct: 294 SDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEI 353

Query: 185 VFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
           V+ +LI+     G F  A    + +V    +P    +   S+L+  L      S+A++V 
Sbjct: 354 VYTSLIDGLCKAGRFAAADRLMQTLVSQGFVP---DAHTYSSLIDGLCRQKELSEAMLVL 410

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSE 265
           +++ E G    P     +I+ L  E
Sbjct: 411 DDMMEKGVQPSPVTYTIIIDELVRE 435



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 72/357 (20%), Positives = 136/357 (38%), Gaps = 20/357 (5%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
              P+S  + S +    +      A  L   +     + TA  Y A++ G      V+ A
Sbjct: 102 GFAPDSHAYTSFVVGYCRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREA 161

Query: 136 LMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA---GGQITKYVFMALINA 192
           + V   M+     PD   ++ ++H         +    L  A   G +    V+ ALI+ 
Sbjct: 162 MSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDG 221

Query: 193 YTTCGEFEKARQVVLDAEIPVKSRS-EVKSALVSALASHGRTSDAIIVYEEIKEAGCNLE 251
           Y   G+ E A  V    ++   S +    + L+S      +   A++++  + +AG  L 
Sbjct: 222 YCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAG--LV 279

Query: 252 PRAVI--ALIEHLNSEGELNRLIQLLEEVHD----PDYWMDGCCRLILHCVRFKQLSSAT 305
           P  V   ALI+   S+G+L+   +LL+ + +    P+ W   C  LI    + +++  A 
Sbjct: 280 PNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWT--CSVLIDALCKHERVGEAQ 337

Query: 306 DLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLD 365
            LL  L  K       +     +  C+       D      L+Q +  + G  P      
Sbjct: 338 LLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAAD-----RLMQTLVSQ-GFVPDAHTYS 391

Query: 366 FLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
            L+      ++L  A L+  +    G+  + ++Y  +    +       + K+L KM
Sbjct: 392 SLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKILDKM 448



 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 38/205 (18%), Positives = 79/205 (38%), Gaps = 4/205 (1%)

Query: 80  NSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVL 139
           N  T+ ++I+      D  ++   L  L      P +  Y + + GY R   +  A  + 
Sbjct: 71  NLRTYTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSFVVGYCRAGLLAHACRLF 130

Query: 140 KEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTC 196
             M        + T++ L+H         + +  +  +++ G     +V+  +++     
Sbjct: 131 VLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGA 190

Query: 197 GEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255
           G   +A  ++ DA     +    V +AL+    + G    A+ V+E +   GC+   R  
Sbjct: 191 GRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTY 250

Query: 256 IALIEHLNSEGELNRLIQLLEEVHD 280
             LI       +L+R + L   + D
Sbjct: 251 TELISGFCKSRKLDRAMMLFSRMVD 275



 Score = 38.9 bits (89), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 42/224 (18%), Positives = 92/224 (41%), Gaps = 25/224 (11%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P   +Y   +   C   ++  A  ++  MV   + P+  T N+++  C  +    L  
Sbjct: 453 IKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALI--CGYA-NLGLTS 509

Query: 67  RIYPMICH---HNLKPNSETFRSMISLNVK----------------IKDFDSAYSLLDDL 107
           + +    H   +  KPN E++  ++ L +K                I +    + LL+++
Sbjct: 510 QAFSTFKHMVANGCKPNEESYTVLLRLLIKKESSNNIPANSVSIWKIAEMKYLHGLLEEM 569

Query: 108 KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE-- 165
            ++ L     +YN  +    R   +  A ++L EM+ AN+ P    ++ +I  C   +  
Sbjct: 570 VKLQLPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIACCCRLKML 629

Query: 166 -DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
            + + + + +  +G       +  +I++    G  + A+QV  D
Sbjct: 630 TEALTFVDSMVKSGYIPQLESYRHIISSLCEEGSIQTAKQVFGD 673


>gi|15226907|ref|NP_181058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100538|sp|O82178.1|PP186_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g35130
 gi|3668091|gb|AAC61823.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253974|gb|AEC09068.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 591

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/261 (21%), Positives = 120/261 (45%), Gaps = 4/261 (1%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+DV ++M +    P+TET N +++   ++ +  +  ++Y  +  H  KPN  T+ ++++
Sbjct: 248 AIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVN 307

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              +    + A  + + L+E  L P   +YNA+M  Y R     GA  +   M+    +P
Sbjct: 308 AFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEP 367

Query: 150 DSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D  +++ ++          D    +E++K  G   T    M L++AY+   +  K   +V
Sbjct: 368 DRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIV 427

Query: 207 LD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
            + +E  V+  + V +++++     G+ +    +  E++   C  +      LI      
Sbjct: 428 KEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKA 487

Query: 266 GELNRLIQLLEEVHDPDYWMD 286
           G L R+ +L  E+ + ++  D
Sbjct: 488 GFLERIEELFVELKEKNFRPD 508



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 73/164 (44%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L I P+  S+  L++       V     +V++M +  + P T  +NS+L+      +F 
Sbjct: 397 RLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFT 456

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
            + +I   + +     +  T+  +I++  K    +    L  +LKE N  P    + + +
Sbjct: 457 KMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRI 516

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI 167
             Y RKK     L V +EM  +   PD  T   L+  CS+EE +
Sbjct: 517 GAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSACSSEEQV 560



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/277 (16%), Positives = 119/277 (42%), Gaps = 8/277 (2%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  L+           A ++ EQ+ +  L P     N+++ +   +        I
Sbjct: 297 PNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEI 356

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           + ++ H   +P+  ++  M+    +      A ++ +++K + + PT   +  +++ Y +
Sbjct: 357 FSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSK 416

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYV 185
            +DV     ++KEM +  V+PD+   + +++          + K   ++++         
Sbjct: 417 ARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADIST 476

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTS---DAIIVYEE 242
           +  LIN Y   G  E+  ++ +  E+  K+         S + ++ R       + V+EE
Sbjct: 477 YNILINIYGKAGFLERIEELFV--ELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEE 534

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279
           + ++GC  +      L+   +SE ++ ++  +L  +H
Sbjct: 535 MIDSGCAPDGGTAKVLLSACSSEEQVEQVTSVLRTMH 571



 Score = 43.5 bits (101), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 90/209 (43%), Gaps = 28/209 (13%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
           + +P+   F  +I    +   +  A SL   L E   +PT   Y  ++  Y     ++ A
Sbjct: 150 SFQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERA 209

Query: 136 LMVLKEMEQANVKPDSQTFSYLIHNC---------SNEEDIIKYYEQLKSAGGQITKYVF 186
            +VL EM+  +V P  +T    ++N           N E+ I  ++++K    + T   +
Sbjct: 210 EVVLVEMQNHHVSP--KTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETY 267

Query: 187 MALINAYTTCGEFEKARQVVLDAEIPVKSRSE-------VKSALVSALASHGRTSDAIIV 239
             +IN Y       KA +  +  ++  + RS          +ALV+A A  G    A  +
Sbjct: 268 NLMINLYG------KASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEI 321

Query: 240 YEEIKEAGCNLEPRAVI--ALIEHLNSEG 266
           +E+++E G  LEP   +  AL+E  +  G
Sbjct: 322 FEQLQEDG--LEPDVYVYNALMESYSRAG 348


>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
          Length = 603

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 110/227 (48%), Gaps = 14/227 (6%)

Query: 36  QMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIK 95
           ++++  ++P   T  S+L AC  +      R+++ +     L  N     ++I++  + +
Sbjct: 119 EILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECE 178

Query: 96  DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFS 155
           D DSA  + D + E    P    YNA++ GY R+     AL + +EM+   +KP+  T  
Sbjct: 179 DVDSARXVFDRIVE----PCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLL 234

Query: 156 YLIHNCS--NEEDIIKYYEQLKSAGGQITKYVFM--ALINAYTTCGEFEKARQVVLDAEI 211
            ++ +C+     D+ K+  +  +      KYV +  ALI+ +  CG  + A  +    E 
Sbjct: 235 SVLSSCALLGSLDLGKWIHKY-AKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIF---EK 290

Query: 212 PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
                ++  SA++ A A+HG+   +++++E ++    N++P  +  L
Sbjct: 291 MRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSE--NVQPDEITFL 335



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 108/243 (44%), Gaps = 10/243 (4%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P    Y  +IT      + + AL +  +M    L P+  T+ S+L +C      +L +
Sbjct: 191 VEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGK 250

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            I+     H+     +   ++I +  K    D A S+ + ++  +       ++A++  Y
Sbjct: 251 WIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKD----TQAWSAMIVAY 306

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITK 183
                 + ++++ + M   NV+PD  TF  L++ CS+    E+  KY+ Q+ S  G +  
Sbjct: 307 ANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPS 366

Query: 184 YV-FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
              + ++++  +  G  E A + +   ++P+     +   L++A +SH     A  V E 
Sbjct: 367 IKHYGSMVDLLSXAGNLEDAYEFI--DKLPISPTPMLWRILLAACSSHNNLDLAEKVSER 424

Query: 243 IKE 245
           I E
Sbjct: 425 IFE 427



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 79/375 (21%), Positives = 152/375 (40%), Gaps = 39/375 (10%)

Query: 98  DSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYL 157
           +S+ S    L E    P   ++N++  GY R  +      +  E+ +  + PD+ TF  L
Sbjct: 76  ESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSL 135

Query: 158 IHNCSNEEDIIKYYEQLKS-------AGGQITKYVFMALINAYTTCGEFEKARQVVLDAE 210
           +  C+    + K  E+ +         G     YV   LIN YT C + + AR V    +
Sbjct: 136 LKACA----VAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVF---D 188

Query: 211 IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNR 270
             V+      +A+++  A   R ++A+ ++ E++  G  L+P   I L+  L+S   L  
Sbjct: 189 RIVEPCVVCYNAMITGYARRNRPNEALSLFREMQ--GKYLKPNE-ITLLSVLSSCALLGS 245

Query: 271 LIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMA----MEYHF 326
           L        D   W+    +    C   K  ++  D+  +      DD ++    M Y  
Sbjct: 246 L--------DLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGS--LDDAVSIFEKMRYKD 295

Query: 327 SEIFCQ--IATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIW 384
           ++ +    +A  +    +  + + + ++ E  + P       LL AC +   ++     +
Sbjct: 296 TQAWSAMIVAYANHGKAEKSMLMFERMRSE-NVQPDEITFLGLLNACSHTGRVEEGRKYF 354

Query: 385 KE-YENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMP-KDDPHV-RFVIQACKQTYT 441
            +     G+  ++  Y  M      +GN + A + + K+P    P + R ++ AC     
Sbjct: 355 SQMVSKFGIVPSIKHYGSMVDLLSXAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNN 414

Query: 442 IPSLQK--ERGFEKD 454
           +   +K  ER FE D
Sbjct: 415 LDLAEKVSERIFELD 429


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/249 (20%), Positives = 104/249 (41%), Gaps = 5/249 (2%)

Query: 33  VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92
           V ++M+     P   T   +L     S +    R++   +      P+   + ++IS   
Sbjct: 29  VFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNALISGYS 88

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
           K KDF  A+  L ++ + + +PT   Y  I+ G  + +  + A+ +L EM      P+  
Sbjct: 89  KAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIY 148

Query: 153 TFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA 209
           T++ ++     E   ++  K  E++   G       + + I     C   ++AR+ +  A
Sbjct: 149 TYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFL--A 206

Query: 210 EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN 269
            +PV       + +++ L   G    A  + + +   GC  +     +LI+     GE+ 
Sbjct: 207 RMPVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVE 266

Query: 270 RLIQLLEEV 278
           R + LL+ +
Sbjct: 267 RAMGLLDSM 275



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/296 (18%), Positives = 122/296 (41%), Gaps = 18/296 (6%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P + ++  L+   C   ++  A  ++ +M +   VP     N+++    ++ +F    + 
Sbjct: 40  PDAFTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKF 99

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +  ++  P   T+ +++    K +    A  LLD++++    P    YN I+ G   
Sbjct: 100 LAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCE 159

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYV 185
           ++ +  A  +L+EM      PD  T++  I     C   ++  K+  ++      ++   
Sbjct: 160 ERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVS--- 216

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEV--KSALVSALASHGRTSDAIIVYEEI 243
           +  +IN     G+ + A + +LD         +V   S+L+      G    A+ + + +
Sbjct: 217 YTTVINGLCKSGDLDSASR-MLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSM 275

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNR----LIQLLEEVHDPDY-----WMDGCCR 290
            + GC     A  +L+  L+  G + +    L+++      PD       +DG C+
Sbjct: 276 LKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCK 331



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 5/162 (3%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQM-VQGELVPSTETINSILHACEESYEFNLVRR 67
           P   +Y   I   C   +V  A   + +M V  ++V  T  IN +     +S + +   R
Sbjct: 180 PDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVINGLC----KSGDLDSASR 235

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +   + +    P+  T+ S+I    K  + + A  LLD + ++   P    YN+++    
Sbjct: 236 MLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALH 295

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK 169
           R   +  A  +L EME+    PD  +++  I      E + K
Sbjct: 296 RLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKK 337



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 31/156 (19%), Positives = 64/156 (41%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           A++ +TP   SY  +I   C    +  A  +++ M      P   T +S++    +  E 
Sbjct: 206 ARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEV 265

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
                +   +     +PN   + S++    ++     A  +L +++     P    YNA 
Sbjct: 266 ERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNAC 325

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
           + G  + + V+ A  V   M +    P++ ++S LI
Sbjct: 326 IDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLI 361



 Score = 40.0 bits (92), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 53/274 (19%), Positives = 106/274 (38%), Gaps = 45/274 (16%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           KL   P+  +Y  L+     L  +  A D++ +M +    P   + N+ +    ++    
Sbjct: 277 KLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVK 336

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNV-----------KIKDFDSAYSLLDD-LKEMN 111
             + ++  +      PN+ ++ SM+ +++           K   FD A +L    L E  
Sbjct: 337 KAKAVFDRMVERGCTPNASSY-SMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKI 395

Query: 112 LMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY 171
             P    YN ++  + +++ +  AL + K+M + N   +  T++ L+H    +       
Sbjct: 396 CEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKNC-CNVVTWNILVHGLCVD------- 447

Query: 172 EQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHG 231
           ++L  A   +   V    I  + T G                         LV A+   G
Sbjct: 448 DRLSDAETMLLTMVDEGFIPDFVTYG------------------------TLVDAMCKCG 483

Query: 232 RTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
           +++ A+ ++EE  + GC  +     ALI  L  E
Sbjct: 484 KSAAALELFEEAVKGGCVPDVVTYSALITGLVHE 517


>gi|255660994|gb|ACU25666.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 376

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 156/377 (41%), Gaps = 32/377 (8%)

Query: 58  ESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL-KEMNLMPTA 116
           ES + +   R+Y  I    + P++  + +M++   ++      + L + +  E N   + 
Sbjct: 2   ESGDIDGAERVYKEIVESKMSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGN--RSV 59

Query: 117 SMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQ 173
           S +N +M G F    V   + + + M+++    DS TF  L+H  C N      +   E 
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMKKSGFVEDSXTFGILVHGFCKNGYINKSLHVLEM 119

Query: 174 LKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEI--PVKSRSEVKSALVSALASHG 231
            +  GG +  + + A+IN       F+KA  V L+  I    K  + V + L++ L +  
Sbjct: 120 AEQKGGVLDAFAYSAMINGLCKEANFDKAVSV-LNGMIKSGCKPNAHVYNTLINGLVAAS 178

Query: 232 RTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE---GELNRLI-QLLEEVHDPDY---- 283
           +  DAIIV+ E+    C+        LI  L  +   GE   L+ +LL++  +P      
Sbjct: 179 KFEDAIIVFREMGTMHCSPTIITYNTLINGLCKKEMFGEAYNLVKELLDKGLNPGVITYS 238

Query: 284 -WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQ 342
             M G C  + H     ++  A  L  Q+  K    ++ M        C +       +Q
Sbjct: 239 MLMKGLC--LDH-----KVERALQLWNQVTSKGFKPDVRMHNILIHGLCSVGK-----MQ 286

Query: 343 IGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWM 402
           + L L  F  +     P+    + L+       D++ A +IW      GL  +++SY   
Sbjct: 287 LALSL-YFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYNIT 345

Query: 403 YKAFLASGNRKSASKLL 419
            K  L S NR S + L 
Sbjct: 346 LKG-LCSCNRISDAILF 361



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 68/151 (45%), Gaps = 1/151 (0%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  +I   C       A+ V+  M++    P+    N++++    + +F     ++  +
Sbjct: 131 AYSAMINGLCKEANFDKAVSVLNGMIKSGCKPNAHVYNTLINGLVAASKFEDAIIVFREM 190

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
              +  P   T+ ++I+   K + F  AY+L+ +L +  L P    Y+ +M G      V
Sbjct: 191 GTMHCSPTIITYNTLINGLCKKEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKV 250

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHN-CS 162
           + AL +  ++     KPD +  + LIH  CS
Sbjct: 251 ERALQLWNQVTSKGFKPDVRMHNILIHGLCS 281



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 125/291 (42%), Gaps = 20/291 (6%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNL 64
           E   S +S+  ++    D  KV   + + E M +   V  + T   ++H  C+  Y  N 
Sbjct: 54  EGNRSVSSFNIMMRGLFDNGKVDEVISIWELMKKSGFVEDSXTFGILVHGFCKNGY-INK 112

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
              +  M        ++  + +MI+   K  +FD A S+L+ + +    P A +YN ++ 
Sbjct: 113 SLHVLEMAEQKGGVLDAFAYSAMINGLCKEANFDKAVSVLNGMIKSGCKPNAHVYNTLIN 172

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKS------AG 178
           G       + A++V +EM   +  P   T++ LI+    +E   + Y  +K         
Sbjct: 173 GLVAASKFEDAIIVFREMGTMHCSPTIITYNTLINGLCKKEMFGEAYNLVKELLDKGLNP 232

Query: 179 GQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKS-RSEVK--SALVSALASHGRTSD 235
           G IT  + M  +     C + +  R + L  ++  K  + +V+  + L+  L S G+   
Sbjct: 233 GVITYSMLMKGL-----CLDHKVERALQLWNQVTSKGFKPDVRMHNILIHGLCSVGKMQL 287

Query: 236 AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGEL-NRLI---QLLEEVHDPD 282
           A+ +Y ++    C     +   L+E    +G++ N L+   ++L    +PD
Sbjct: 288 ALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPD 338



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/153 (16%), Positives = 65/153 (42%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
             +  +P+  +Y  LI   C       A ++V++++   L P   T + ++      ++ 
Sbjct: 191 GTMHCSPTIITYNTLINGLCKKEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKV 250

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
               +++  +     KP+      +I     +     A SL  D+      P    +N +
Sbjct: 251 ERALQLWNQVTSKGFKPDVRMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTL 310

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFS 155
           M G+++  D++ AL++   + +  ++PD  +++
Sbjct: 311 MEGFYKDGDIRNALVIWARILRNGLEPDIISYN 343



 Score = 38.5 bits (88), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 50/273 (18%), Positives = 116/273 (42%), Gaps = 5/273 (1%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +++P +  Y  ++     + K+    ++ E M+  E   S  + N ++    ++ + + V
Sbjct: 20  KMSPDAVVYNAMLNGYFRVAKIKDCFELWE-MMGSEGNRSVSSFNIMMRGLFDNGKVDEV 78

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             I+ ++       +S TF  ++    K    + +  +L+  ++   +  A  Y+A++ G
Sbjct: 79  ISIWELMKKSGFVEDSXTFGILVHGFCKNGYINKSLHVLEMAEQKGGVLDAFAYSAMING 138

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQIT 182
             ++ +   A+ VL  M ++  KP++  ++ LI+     S  ED I  + ++ +     T
Sbjct: 139 LCKEANFDKAVSVLNGMIKSGCKPNAHVYNTLINGLVAASKFEDAIIVFREMGTMHCSPT 198

Query: 183 KYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
              +  LIN       F +A  +V +  +  +       S L+  L    +   A+ ++ 
Sbjct: 199 IITYNTLINGLCKKEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVERALQLWN 258

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQL 274
           ++   G   + R    LI  L S G++   + L
Sbjct: 259 QVTSKGFKPDVRMHNILIHGLCSVGKMQLALSL 291


>gi|225451899|ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Vitis vinifera]
          Length = 590

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 107/240 (44%), Gaps = 4/240 (1%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           TP+  +Y  LI   C +  +  AL + E M    L P   T NSIL    E  +     R
Sbjct: 297 TPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANR 356

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +   +    ++P++ T  ++I+   KI D  SA  +   + E  L P    + A++ G+ 
Sbjct: 357 LLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFC 416

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITKY 184
           +  +V  A   L EM  A   P   T+S+L+   ++  N+E +I+  ++L   G  +   
Sbjct: 417 KLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDIS 476

Query: 185 VFMALINAYTTCGEFEKARQV-VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
           V+ ALI       + E A ++  L     +K  S V ++L  A    G+   A  + +E+
Sbjct: 477 VYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASDMLDEM 536



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 96/219 (43%), Gaps = 4/219 (1%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+ V E M      P       +L++  ++   N+V ++Y  +    + PN   F  +I 
Sbjct: 146 AIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIH 205

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              K  D + A  LL++++   + P    YN +++ Y +K     AL +   ME+  V P
Sbjct: 206 ACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSP 265

Query: 150 DSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYV-FMALINAYTTCGEFEKARQV--V 206
           D  T++ LI+    E  + +     +   G    +V +  LI+ Y    + E+A ++  V
Sbjct: 266 DIVTYNSLIYGFCREGRMREALRLFREINGATPNHVTYTTLIDGYCRVNDLEEALRLREV 325

Query: 207 LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
           ++ E  +       ++++  L   G+  DA  +  E+ E
Sbjct: 326 MEVE-GLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSE 363



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 50/244 (20%), Positives = 104/244 (42%), Gaps = 28/244 (11%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI------------- 122
           N K + ++  +MI    K K F +A +LL+ +   + + + S+ NA+             
Sbjct: 70  NHKHSLQSSWTMIHTLAKHKQFKTAQNLLERIAVRDYLSSPSVLNAVVRIHDDPDSNSQI 129

Query: 123 ----MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLK 175
               +  Y   +  Q A+ V + M     KP     + L+++ +       + K Y+++ 
Sbjct: 130 LSWLVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMV 189

Query: 176 SAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTS 234
             G     ++F  LI+A    G+ EKA Q++ + E   +       + L+S     G   
Sbjct: 190 RVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHY 249

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD--PDY-----WMDG 287
           +A+ + + ++  G + +     +LI     EG +   ++L  E++   P++      +DG
Sbjct: 250 EALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREINGATPNHVTYTTLIDG 309

Query: 288 CCRL 291
            CR+
Sbjct: 310 YCRV 313



 Score = 38.5 bits (88), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 27/154 (17%), Positives = 66/154 (42%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++ P + +   LI   C +  +  A+ V ++M++  L P   T  +++H   + +E +  
Sbjct: 365 KVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSA 424

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           +     +      P+  T+  ++       + ++   L D+L    L    S+Y A++  
Sbjct: 425 KEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRR 484

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159
             +   ++ A  +   M+   +K DS  ++ L +
Sbjct: 485 LCKIDKIESAERIFTLMQGKGMKGDSVVYTSLAY 518


>gi|449444598|ref|XP_004140061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27270-like [Cucumis sativus]
          Length = 1062

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 114/260 (43%), Gaps = 25/260 (9%)

Query: 10  SSASYKKLITYSCDLLKV---------------HVALDVVEQMVQGELVPSTETINSILH 54
           +S  YK+LI    DL  V                VA +VV   +   L   T   N+ + 
Sbjct: 722 ASTLYKELIEKGYDLGAVAVSRIVNTLTVGGKHRVAENVVRASLNCGLELDTVAFNTFIK 781

Query: 55  ACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMP 114
           A  E  + +   RIY  +    + P+ +T+ +MIS+  + +  D A  + +  +   L P
Sbjct: 782 AMLEGGKLHFASRIYEHMIALGIVPSIQTYNTMISVYGRGRKLDKAVEMFNAARSSGLSP 841

Query: 115 TASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN------EEDII 168
               Y  +++ Y +      A ++ KEM +  VKP   +++ +++  +N       E+++
Sbjct: 842 DEKAYTNLISCYGKAGKTHEASLLFKEMLEEGVKPGMVSYNIMVNVYANAGLHEETENLL 901

Query: 169 KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSAL 227
           K  EQ        T   + +LI AYT   ++ +A +++    E  + +       L+SAL
Sbjct: 902 KAMEQDAIVPDSFT---YFSLIRAYTQSCKYSEAEKIINSMQEKGIPTTCAHYDLLLSAL 958

Query: 228 ASHGRTSDAIIVYEEIKEAG 247
           A  G    A  VY+E++ AG
Sbjct: 959 AKAGMIRKAERVYDELQTAG 978


>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
 gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 908

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/292 (21%), Positives = 117/292 (40%), Gaps = 42/292 (14%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I+ +  SY  +I   C   K+ +A  + ++MV   L P+  T  S++    +        
Sbjct: 431 ISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGLVPKAF 490

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           ++Y  +    + PN+ TF ++I    +I     A  L D++ E+ ++P    YN ++ G+
Sbjct: 491 KLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIEGH 550

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVF 186
            R+ +   A  +L EM +  + PD+                                Y +
Sbjct: 551 CREGNTTRAFELLDEMIKKGLSPDT--------------------------------YTY 578

Query: 187 MALINAYTTCGEFEKARQVVLDAEIPVKSRSEV-KSALVSALASHGRTSDAIIVYEEIKE 245
             LI    + G   +A++ + D     +   E+  +AL+      GR  +A++  +E+  
Sbjct: 579 RPLIAGLCSTGRVSEAKEFINDLHHKHQRLDELCYTALLQGFCKEGRIKEALVARQEMVG 638

Query: 246 AGCNLEPRAVIALIEHLNSEGELNR----LIQLLEEVHDPDYWMDGCCRLIL 293
            G  ++  +   LI      G LN+    L +LL E+H      D     IL
Sbjct: 639 RGLQMDLVSYAVLI-----SGALNQNDRILFELLREMHGKGMQPDNVIYTIL 685



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 77/423 (18%), Positives = 170/423 (40%), Gaps = 9/423 (2%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L   PS A+   LI     +  +  A +++ ++ +  +VP+    NS++++  ++ +  
Sbjct: 323 ELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSLCKTGKLE 382

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               ++ ++    L PN  T+  +I    +    D A+   + + E  +  T   YN+++
Sbjct: 383 EAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMI 442

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQ 180
               +   ++ A ++ KEM    +KP   T++ LI     +  +    K Y ++   G  
Sbjct: 443 NCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIA 502

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
                F ALI       +  +A ++  +  E+ +       + L+      G T+ A  +
Sbjct: 503 PNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIEGHCREGNTTRAFEL 562

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFK 299
            +E+ + G + +      LI  L S G ++   + + ++H     +D  C   L     K
Sbjct: 563 LDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLDELCYTALLQGFCK 622

Query: 300 QLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPP 359
           +      L+ + +   +  +M +  +   I   +   D    +I  +LL+ +  + G+ P
Sbjct: 623 EGRIKEALVARQEMVGRGLQMDLVSYAVLISGALNQND----RILFELLREMHGK-GMQP 677

Query: 360 SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLL 419
                  L+   + + +LK+A   W      G   N ++Y  +      +G    A  L 
Sbjct: 678 DNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAKLLF 737

Query: 420 SKM 422
            +M
Sbjct: 738 KRM 740



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 76/428 (17%), Positives = 175/428 (40%), Gaps = 26/428 (6%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           SS+ +  LI +     +V   + VV  M    L+P   T++++L+A     +F  V  ++
Sbjct: 154 SSSGFDMLIQHYVQNKRVMDGVLVVNLMRDYGLLPEVRTLSALLNALARIRKFRQVLELF 213

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
             + +  +KP+   +  ++    ++KDF+ A  +++  +      +   YN  + G  + 
Sbjct: 214 DTLVNAGVKPDCYIYTVVVKCLCELKDFNKAKEIINQAEGNGCSLSIVTYNVFINGLCKS 273

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVF 186
           K V  A+ V + + +  +K D  T+  L+      ++    ++  +++   G   ++   
Sbjct: 274 KRVWEAVEVKRSLGEKGLKADLVTYCTLVLGLCRIQEFEVGMEMMDEMIELGYVPSEAAV 333

Query: 187 MALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
             LI      G  E A +++    ++ V     V ++++++L   G+  +A +++  + E
Sbjct: 334 SGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEAELLFSVMAE 393

Query: 246 AGCNLEPRAVIALIEHLNSEGEL-------NRLIQ--LLEEVHDPDYWMDGCCRLILHCV 296
            G N        LI+      +L       N++I+  +   V+  +  ++  C       
Sbjct: 394 RGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQC------- 446

Query: 297 RFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELG 356
           +F ++  A  L K++ DK     +A        +C+     P   ++  ++        G
Sbjct: 447 KFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGLV-PKAFKLYHEM-----TGKG 500

Query: 357 LPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSAS 416
           + P+      L+        +  A  ++ E     +  N ++Y  + +     GN   A 
Sbjct: 501 IAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIEGHCREGNTTRAF 560

Query: 417 KLLSKMPK 424
           +LL +M K
Sbjct: 561 ELLDEMIK 568



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 3/155 (1%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSIL-HACEESYEFNLVR 66
            P+S +Y  L+        V+ A  + ++M+ GE +P+  T    L H  +E    N ++
Sbjct: 711 VPNSVTYTALVNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQ 770

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
               M+       N+ T+  +I    +I  F  A  LLD +  + ++P    Y+  +  Y
Sbjct: 771 LHNAML--QGSFANTVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEY 828

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC 161
            ++ +V  A+ + + M Q  +KPD   F++LIH C
Sbjct: 829 CKRGNVDAAMDMWECMLQRGLKPDRVVFNFLIHAC 863



 Score = 45.1 bits (105), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 116/272 (42%), Gaps = 20/272 (7%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMV----QGELVPSTETINSILHACEESYEFNLVRRIY 69
           Y  L+   C   ++  AL   ++MV    Q +LV     I+  L+   +   F L+R ++
Sbjct: 613 YTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISGALNQ-NDRILFELLREMH 671

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
                  ++P++  +  +I   +K  +   A+     +     +P +  Y A++ G F+ 
Sbjct: 672 G----KGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKA 727

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA---GGQITKYVF 186
             V  A ++ K M      P+  T+   + + + E + ++   QL +A   G       +
Sbjct: 728 GYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGN-MENALQLHNAMLQGSFANTVTY 786

Query: 187 MALINAYTTCGEFEKARQVVLDAEIPVKSRSE--VKSALVSALASHGRTSDAIIVYEEIK 244
             LI  Y   G+F++A + +LD  I +    +    S  +      G    A+ ++E + 
Sbjct: 787 NILIRGYCQIGKFQEAAK-LLDVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMDMWECML 845

Query: 245 EAGCNLEPRAVI--ALIEHLNSEGELNRLIQL 274
           + G  L+P  V+   LI      GEL+R +QL
Sbjct: 846 QRG--LKPDRVVFNFLIHACCLNGELDRALQL 875



 Score = 38.1 bits (87), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 38/84 (45%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           + + P   +Y   I   C    V  A+D+ E M+Q  L P     N ++HAC  + E + 
Sbjct: 812 IGMVPDCITYSTFIYEYCKRGNVDAAMDMWECMLQRGLKPDRVVFNFLIHACCLNGELDR 871

Query: 65  VRRIYPMICHHNLKPNSETFRSMI 88
             ++   +    LKP   T+ S++
Sbjct: 872 ALQLRNDMMLRGLKPTQSTYHSLM 895


>gi|147841262|emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]
          Length = 590

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 107/240 (44%), Gaps = 4/240 (1%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           TP+  +Y  LI   C +  +  AL + E M    L P   T NSIL    E  +     R
Sbjct: 297 TPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANR 356

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +   +    ++P++ T  ++I+   KI D  SA  +   + E  L P    + A++ G+ 
Sbjct: 357 LLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFC 416

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITKY 184
           +  +V  A   L EM  A   P   T+S+L+   ++  N+E +I+  ++L   G  +   
Sbjct: 417 KLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDIS 476

Query: 185 VFMALINAYTTCGEFEKARQV-VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
           V+ ALI       + E A ++  L     +K  S V ++L  A    G+   A  + +E+
Sbjct: 477 VYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASDMLDEM 536



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 96/219 (43%), Gaps = 4/219 (1%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+ V E M      P       +L++  ++   N+V ++Y  +    + PN   F  +I 
Sbjct: 146 AIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIH 205

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              K  D + A  LL++++   + P    YN +++ Y +K     AL +   ME+  V P
Sbjct: 206 ACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSP 265

Query: 150 DSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYV-FMALINAYTTCGEFEKARQV--V 206
           D  T++ LI+    E  + +     +   G    +V +  LI+ Y    + E+A ++  V
Sbjct: 266 DIVTYNSLIYGFCREGRMREALRLFREINGATPNHVTYTTLIDGYCRVNDLEEALRLREV 325

Query: 207 LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
           ++ E  +       ++++  L   G+  DA  +  E+ E
Sbjct: 326 MEVE-GLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSE 363



 Score = 42.4 bits (98), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 48/234 (20%), Positives = 99/234 (42%), Gaps = 28/234 (11%)

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI-----------------MAGYFR 128
           +MI    K K F +A +LL+ +   + + + S+ NA+                 +  Y  
Sbjct: 80  TMIHTLAKHKQFKTAQNLLERIAVRDYLSSPSVLNAVVRIHDDPDSNSQILSWLVIFYAN 139

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLKSAGGQITKYV 185
            +  Q A+ V + M     KP     + L+++ +       + K Y+++   G     ++
Sbjct: 140 SRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHI 199

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           F  LI+A    G+ EKA Q++ + E   +       + L+S     G   +A+ + + ++
Sbjct: 200 FNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRME 259

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD--PDY-----WMDGCCRL 291
             G + +     +LI     EG +   ++L  E++   P++      +DG CR+
Sbjct: 260 RGGVSPDIVTYNSLIYGFCREGRMREALRLFREINGATPNHVTYTTLIDGYCRV 313



 Score = 38.5 bits (88), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 27/154 (17%), Positives = 66/154 (42%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++ P + +   LI   C +  +  A+ V ++M++  L P   T  +++H   + +E +  
Sbjct: 365 KVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSA 424

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           +     +      P+  T+  ++       + ++   L D+L    L    S+Y A++  
Sbjct: 425 KEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRR 484

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159
             +   ++ A  +   M+   +K DS  ++ L +
Sbjct: 485 LCKIDKIESAERIFTLMQGKGMKGDSVVYTSLAY 518


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 124/278 (44%), Gaps = 7/278 (2%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNL 64
           +I P    +  ++   C   K+  A DVV+ M+   + P+  T N+++   C +S E + 
Sbjct: 274 KIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQS-EMDE 332

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
             +++  + H+   PN  ++ ++I+   KI+  D A  L +++ +  L+P    YN +M 
Sbjct: 333 AVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMH 392

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK- 183
                + +Q A+ +  EM      PD  T+  L+     +  + +    LK+  G     
Sbjct: 393 XCHVGR-LQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDP 451

Query: 184 --YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
              ++  +I+     GE E AR +  + +   ++      + +++ L   G   +A  ++
Sbjct: 452 DIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLF 511

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            E+   GC+ +      + + L    E  R IQLL+E+
Sbjct: 512 MEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEM 549



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 79/422 (18%), Positives = 168/422 (39%), Gaps = 13/422 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P   +   LI   C L ++  A  V+ ++++    P T T  +++       +     
Sbjct: 100 IPPDVYTLNILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDAL 159

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +     +PN  T+ ++I+   K+ + ++A  LL  +++ N  P   +Y +I+   
Sbjct: 160 HLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSL 219

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLKSAGGQITK 183
            + + V  A  +  +M    + PD  T++ LIH+  N    + +     Q+ ++      
Sbjct: 220 CKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDV 279

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEI--PVKSRSEVKSALVSALASHGRTSDAIIVYE 241
            +F  +++A    G+  +A  VV D  I   V+      +AL+          +A+ V++
Sbjct: 280 VIFSTVVDALCKEGKITEAHDVV-DMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFD 338

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC-RLILHCVRFKQ 300
            +   G      +   LI        +++   L EE+   +   +      ++H     +
Sbjct: 339 TMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHXCHVGR 398

Query: 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS 360
           L  A  L  ++    +  ++A      +  C+ +  D       + LL+ I+    + P 
Sbjct: 399 LQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDE-----AMALLKTIEGS-NMDPD 452

Query: 361 RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420
            +    ++     A +L+ A  I+    + GL  NV +Y  M       G    A+KL  
Sbjct: 453 IQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFM 512

Query: 421 KM 422
           +M
Sbjct: 513 EM 514



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 62/150 (41%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P  A+Y+ L+ Y C    +  A+ +++ +    + P  +    ++     + E    R I
Sbjct: 416 PDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDI 475

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    L+PN  T+  MI+   +    D A  L  ++      P    YN I  G  +
Sbjct: 476 FSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQ 535

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            K+   A+ +L+EM       D  T + L+
Sbjct: 536 NKEALRAIQLLQEMLARGFSADVSTTTLLV 565



 Score = 43.1 bits (100), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 38/209 (18%), Positives = 89/209 (42%), Gaps = 4/209 (1%)

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
           H +  P++  F  +++   K K + + +SL + +    + P     N ++  +     + 
Sbjct: 62  HMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRLG 121

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALI 190
            A  VL ++ +   +PD+ TF+ LI     E    D +  ++++   G Q     +  LI
Sbjct: 122 FAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLI 181

Query: 191 NAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
           N     G    A +++   E    +    V ++++ +L    + ++A  ++ ++   G +
Sbjct: 182 NGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGIS 241

Query: 250 LEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            +     +LI  L +  E   +  LL ++
Sbjct: 242 PDIFTYTSLIHSLCNLCEWKHVTTLLNQM 270


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/288 (21%), Positives = 123/288 (42%), Gaps = 6/288 (2%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNL 64
           +I P    +  ++   C   KV  A ++V+ M+Q  + P   T  +++   C +S E + 
Sbjct: 270 KILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQS-EMDE 328

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
             +++ M+      P+  ++ ++I+   KI   D A  L +++     +P    YN +M 
Sbjct: 329 AVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMY 388

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQI 181
           G      +Q A+ +  EM      PD  T+S L+ + C N   E+ +   + ++++    
Sbjct: 389 GLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNP 448

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
              V+  +I+     GE E AR +  + +   +       + ++  L   G  ++A  ++
Sbjct: 449 DIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLF 508

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC 288
            E+    C+ +      +        E  R IQLLEE+    +  D C
Sbjct: 509 MEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADSC 556



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 75/161 (46%), Gaps = 2/161 (1%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEES 59
           M  +    P   SY  LI   C + K+  A+ + E+M + E +P T+T N++++  C   
Sbjct: 335 MMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVG 394

Query: 60  YEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMY 119
              + +   + M+    + P+  T+  ++    K +  + A +LL  ++  NL P   +Y
Sbjct: 395 RLQDAIALFHEMVARGQM-PDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVY 453

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160
           N I+ G  R  +++ A  +   +    + P   T++ +IH 
Sbjct: 454 NIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHG 494



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/286 (17%), Positives = 118/286 (41%), Gaps = 4/286 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I+P   +Y  L+   C+L +      ++ QMV  +++P     ++++ A  +  +     
Sbjct: 236 ISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAH 295

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            I  M+    ++P+  T+ +++  +    + D A  + D +      P    Y  ++ GY
Sbjct: 296 EIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGY 355

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITK 183
            +   +  A+ + +EM +    PD++T++ L++        +D I  + ++ + G     
Sbjct: 356 CKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDL 415

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             +  L+++       E+A  ++   E   +    +V + ++  +   G    A  ++  
Sbjct: 416 VTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSN 475

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC 288
           +   G +        +I  L   G LN   +L  E+   D   DGC
Sbjct: 476 LSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGC 521



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 111/257 (43%), Gaps = 18/257 (7%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTET----INSILHACEESYEFNL 64
           PS   + KL+T    +      L +  QM    + P+  T    INS  H     + F++
Sbjct: 63  PSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSV 122

Query: 65  VRRIYPMICHHNLKPNSETFRSMI-SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
           + +I  +      +P+  TF ++I  L V+ K    A  L D + +    P    Y  ++
Sbjct: 123 LAKILKL----GHQPDPTTFTTLIRGLCVEGK-IGEALHLFDKMIDEGFQPNVVTYGTLI 177

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK 183
            G  +  +   A+ +L+ MEQ N +PD   ++ +I +   +  + + +       GQ   
Sbjct: 178 NGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGIS 237

Query: 184 ---YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK--SALVSALASHGRTSDAII 238
              + + +L++A     E+ K    +L+  +  K   +V   S +V AL   G+ ++A  
Sbjct: 238 PDIFTYTSLVHALCNLCEW-KHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHE 296

Query: 239 VYEEIKEAGCNLEPRAV 255
           + + + + G  +EP  V
Sbjct: 297 IVDMMIQRG--VEPDVV 311



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/203 (18%), Positives = 88/203 (43%), Gaps = 3/203 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +   LI   C L +V  A  V+ ++++    P   T  +++       +     
Sbjct: 96  VPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEAL 155

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +     +PN  T+ ++I+   K+ +  +A  LL  +++ N  P   +Y +I+   
Sbjct: 156 HLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSL 215

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITK 183
            + + V  A  +  +M    + PD  T++ L+H   N    + +     Q+ ++      
Sbjct: 216 CKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDV 275

Query: 184 YVFMALINAYTTCGEFEKARQVV 206
            +F  +++A    G+  +A ++V
Sbjct: 276 VIFSTVVDALCKEGKVTEAHEIV 298


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/265 (20%), Positives = 117/265 (44%), Gaps = 18/265 (6%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +I+   +      AL++ ++M++  + P   T+ +++ A   S    L R+++  I
Sbjct: 162 SWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWI 221

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
             H    N +   ++I    K  + ++A  L   L   +++     +N ++ GY      
Sbjct: 222 ADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVIS----WNILIGGYTHLNLY 277

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI-----IKYYEQLKSAGGQITKYVFM 187
           + AL++ +EM ++   P+  T   ++H C++   I     I  Y   +  G      +  
Sbjct: 278 KEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRT 337

Query: 188 ALINAYTTCGEFEKARQV---VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +LI+ Y+ CG+ E A QV   +L   +P        +A++   A HGR + A  ++  ++
Sbjct: 338 SLIDMYSKCGDIEAAHQVFNSMLHKSLP------AWNAMIFGFAMHGRANAAFDIFSRMR 391

Query: 245 EAGCNLEPRAVIALIEHLNSEGELN 269
           +     +    + L+   +  G L+
Sbjct: 392 KNEIKPDDITFVGLLSACSHAGMLD 416



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 100/209 (47%), Gaps = 14/209 (6%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLK--PNSETFR-S 86
           AL + ++M++    P+  T+ SILHAC      ++ R I+  I    LK   N+ + R S
Sbjct: 280 ALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYI-DKRLKGVTNASSLRTS 338

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           +I +  K  D ++A+ + + +    L  +   +NA++ G+        A  +   M +  
Sbjct: 339 LIDMYSKCGDIEAAHQVFNSM----LHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNE 394

Query: 147 VKPDSQTFSYLIHNCSNEE--DIIKYYEQLKSAGGQITKYV--FMALINAYTTCGEFEKA 202
           +KPD  TF  L+  CS+    D+ ++  +  +   +IT  +  +  +I+     G F++A
Sbjct: 395 IKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEA 454

Query: 203 RQVVLDAEIPVKSRSEVKSALVSALASHG 231
            +++  + + ++    +  +L+ A   HG
Sbjct: 455 EEMI--STMTMEPDGVIWCSLLKACKMHG 481



 Score = 45.8 bits (107), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 9/109 (8%)

Query: 98  DSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYL 157
           +SA ++ D++   +++     +NA+++GY    + + AL + KEM + NV+PD  T   +
Sbjct: 146 ESARNMFDEIPVKDVVS----WNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTV 201

Query: 158 IHNCSNEEDIIKYYEQLKSA----GGQITKYVFMALINAYTTCGEFEKA 202
           I + S     I+   Q+ S     G      +  ALI+ Y+ CGE E A
Sbjct: 202 I-SASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETA 249



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 14/149 (9%)

Query: 100 AYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159
           A S+ + ++E NL+    ++N +  G+    D   AL +   M    + P+S TF +L+ 
Sbjct: 16  AISVFETIQEPNLL----IWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLK 71

Query: 160 NCSN---EEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSR 216
           +C+     ++ ++ +  +   G ++  YV  +LI+ Y      E A +V         S 
Sbjct: 72  SCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKV-----FDRSSH 126

Query: 217 SEVKS--ALVSALASHGRTSDAIIVYEEI 243
            +V S  ALV+  AS G    A  +++EI
Sbjct: 127 RDVVSYTALVTGYASRGYIESARNMFDEI 155


>gi|302767314|ref|XP_002967077.1| hypothetical protein SELMODRAFT_87452 [Selaginella moellendorffii]
 gi|300165068|gb|EFJ31676.1| hypothetical protein SELMODRAFT_87452 [Selaginella moellendorffii]
          Length = 653

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 122/282 (43%), Gaps = 29/282 (10%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEES--- 59
           AK+ I  +S  +  +IT +        A+++ E+MV   L P   T  S L AC  S   
Sbjct: 182 AKMPIK-NSICWTAVITANAQNGHFGPAMELYERMVLEGLKPDRVTFVSALDACASSPRS 240

Query: 60  ----YEFNLVRRIYPMIC-----HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEM 110
               Y   + +RI  +        H   P      +++++  K+ + D A  +   L E 
Sbjct: 241 PPPRYRAVVAQRIASLAAAVAASGHGSSPIVAA--ALLNMYGKLGELDRAREIFHSLPER 298

Query: 111 NLMPTASMYNAIMAGYFRKKDVQGALMVLKEME-QANVKPDSQTFSYLIHNCSNE----E 165
           N    A M+N ++A   +   +  AL     M      +PD  TF+ +I  C+      +
Sbjct: 299 N----AVMWNVMIAASSQAGAIHEALGFFWAMNLDGAARPDGSTFTSIISACAAGGVPPD 354

Query: 166 DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALV 224
             ++ +  L S+G  +   +  AL+  Y  CG  + AR+V  +    ++ +  V  +ALV
Sbjct: 355 LAVRIHAALLSSGVTLDDPLLTALLGLYAKCGRTDDARRVFSE----IREKGVVPWTALV 410

Query: 225 SALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
           SALA+ GR+SDA+     ++  G        +A IE  +  G
Sbjct: 411 SALAADGRSSDAVAALRRMELEGVRPNEYTFVAAIEAASQLG 452



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 110/261 (42%), Gaps = 14/261 (5%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQM-VQGELVPSTETINSILHACEES-YEFNLVRRIYPM 71
           +  +I  S     +H AL     M + G   P   T  SI+ AC       +L  RI+  
Sbjct: 303 WNVMIAASSQAGAIHEALGFFWAMNLDGAARPDGSTFTSIISACAAGGVPPDLAVRIHAA 362

Query: 72  ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131
           +    +  +     +++ L  K    D A  +  +++E  ++P  ++ +A+ A   R  D
Sbjct: 363 LLSSGVTLDDPLLTALLGLYAKCGRTDDARRVFSEIREKGVVPWTALVSALAADG-RSSD 421

Query: 132 VQGALMVLKEMEQANVKPDSQTFSYLIHNCS--NEEDIIKYYEQLKSAGGQITKYVFMAL 189
              A+  L+ ME   V+P+  TF   I   S          + +  SAG     +V   +
Sbjct: 422 ---AVAALRRMELEGVRPNEYTFVAAIEAASQLGIAHGRSLHARATSAGLDSDPFVANTV 478

Query: 190 INAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEIKEAG 247
           +  Y +CG   +AR  V D    +  R  + S   ++ ALA HG + +++ +Y E++  G
Sbjct: 479 MAMYASCGSIAEAR-AVFDG---MGHRRNLVSWNCMIEALARHGHSLESLALYSEMELDG 534

Query: 248 CNLEPRAVIALIEHLNSEGEL 268
                   ++++   +  GE+
Sbjct: 535 VPPSAATFVSVLAACSHVGEV 555



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 102/215 (47%), Gaps = 10/215 (4%)

Query: 33  VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICH-HNLKPNSETFRSMISLN 91
           V+++M + +   +  T  ++L  C +       +RI+  I   H L  +      +  + 
Sbjct: 7   VLDEMERAKSQAAPSTYAAVLRRCADDRALEQGQRIHDHIRKFHGLSQDRFLANCLADMY 66

Query: 92  VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151
            K    D +  + D + + N+     +  A      R+ +   AL +L+ M+Q+ V P++
Sbjct: 67  GKCGRPDESRKIFDAIADKNVFSWTILIAAFSESVDRRWE---ALHLLRFMDQSGVAPNA 123

Query: 152 QTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
            TF  ++  CS     + +I  + ++ S G  +   V  AL+NAY  CG  ++A+     
Sbjct: 124 ATFVSVLVACSELRCLDAVIALHARIASLGLDLEIVVGTALVNAYGKCGSVDRAKNAF-- 181

Query: 209 AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
           A++P+K+ S   +A+++A A +G    A+ +YE +
Sbjct: 182 AKMPIKN-SICWTAVITANAQNGHFGPAMELYERM 215


>gi|125524449|gb|EAY72563.1| hypothetical protein OsI_00429 [Oryza sativa Indica Group]
          Length = 535

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/256 (18%), Positives = 113/256 (44%), Gaps = 3/256 (1%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           +  K E  P   S+  ++   C    +  A  V  +++  +L P   T  + +++  +S 
Sbjct: 242 LQKKDEFPPVIKSWNIILNGWCVKGSLADAKRVWNEIIASKLKPDLFTYGTFINSLTKSG 301

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           + +   +++  +    + P+      +I      K    A  +  ++ +       + YN
Sbjct: 302 KLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKRIPEALEIFGEMNDRGCQADVATYN 361

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQ 180
            ++  + +   ++    +L +ME   V P++ T+SY++      +D+I   ++++ +G +
Sbjct: 362 TLIKHFCKINRMEKVYELLDDMEVKGVSPNNMTYSYILKTTEKPKDVISLMQRMEKSGCR 421

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAII 238
           +    +  ++N Y +  ++EK  Q+V D      S  + +S   +V  L SHG+  +A+ 
Sbjct: 422 LDSDTYNLILNLYVSW-DYEKGVQLVWDEMERNGSGPDQRSFTIMVHGLHSHGKLDEALH 480

Query: 239 VYEEIKEAGCNLEPRA 254
            Y  ++  G   EPR 
Sbjct: 481 YYRTMESRGMTPEPRT 496


>gi|414866221|tpg|DAA44778.1| TPA: hypothetical protein ZEAMMB73_421222 [Zea mays]
          Length = 595

 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 125/294 (42%), Gaps = 60/294 (20%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y++ +    +L  VH A         G + P+  T+ S+LHAC +    +   R++ +  
Sbjct: 197 YRQCLELFQELASVHGA---------GGVRPNNVTVASVLHACAQLKAVDFGVRVHRLAA 247

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY------- 126
            + L  +   + S +    K      A  L D + + +    A  Y+ ++AGY       
Sbjct: 248 ENGLDSDIAVWNSAVGFYAKCGRLKYARELFDGMAKKD----AVSYSTMIAGYMNHGHVD 303

Query: 127 -----FRKKDVQG-------------------ALMVLKEMEQANVKPDSQTFSYLIHNCS 162
                F++ DVQG                    L +L EM  + + P+S T S LI +  
Sbjct: 304 MGLELFQRADVQGISIWNAVIAGLIQHGRQSDVLGLLNEMIGSGMLPNSATLSILIPSV- 362

Query: 163 NEEDIIKYYEQLKSAGGQITKY-------VFMALINAYTTCGEFEKARQVVLDAEIPVKS 215
               +      +K A G   +        V  ALI+AY+  G  + +R+V    +     
Sbjct: 363 ---HLFSTLLGVKQAHGYAIRNNYDQSIGVVTALIDAYSKAGFLDGSRRVFKLTD----D 415

Query: 216 RSE-VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGEL 268
           RSE V ++++SA+A+HG  ++A+ ++ E+  AG  L+  A  A++      G++
Sbjct: 416 RSEIVWTSIISAVAAHGEAAEALHLFNEMVNAGIRLDTIAFTAVLTACAHTGKV 469


>gi|255556314|ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541506|gb|EEF43055.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 719

 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 89/201 (44%), Gaps = 3/201 (1%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           SY  +I   C    +  A +  ++M    + P+  T N+++    +  E    R +  M+
Sbjct: 464 SYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGYCKGGEICKSRDLLVML 523

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
             H  KP+  TF S+I    + K  + A     ++    L P A  YN ++       DV
Sbjct: 524 LEHGFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIGDV 583

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHN-C--SNEEDIIKYYEQLKSAGGQITKYVFMAL 189
             ++ +L++M+   + PD  +F+ LI + C     ED  K +  + S G     Y ++A 
Sbjct: 584 PRSMKLLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAF 643

Query: 190 INAYTTCGEFEKARQVVLDAE 210
           I  +   G F +A+++ L  E
Sbjct: 644 IKVFCQSGRFNEAKELFLSME 664



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/218 (20%), Positives = 97/218 (44%), Gaps = 4/218 (1%)

Query: 35  EQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKI 94
            QMV+  L+ +  + N ++    ++   +     +  + +  + PN  TF ++I    K 
Sbjct: 451 NQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGYCKG 510

Query: 95  KDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTF 154
            +   +  LL  L E    P    +++I+ G  R K ++ AL    EM    + P++ T+
Sbjct: 511 GEICKSRDLLVMLLEHGFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTY 570

Query: 155 SYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA-E 210
           + LIH+     D+   +K   ++++ G     + F ALI ++   G+ E A+++      
Sbjct: 571 NILIHSLCIIGDVPRSMKLLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLS 630

Query: 211 IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC 248
           + +   +    A +      GR ++A  ++  ++  GC
Sbjct: 631 LGLIPDNYTYVAFIKVFCQSGRFNEAKELFLSMEANGC 668



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 50/117 (42%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           PST   N+++ A  +S   +L    +  +   N KP+  T+  +I    +    D A  L
Sbjct: 215 PSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIHGVCRSGVVDEALRL 274

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160
           +  ++ +   P    Y  ++ G+F  K V  A  VL+ M+   V P   T    IH 
Sbjct: 275 VKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAFRVLETMKARKVSPSEATIRSFIHG 331



 Score = 45.8 bits (107), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 86/378 (22%), Positives = 146/378 (38%), Gaps = 59/378 (15%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILH---------- 54
           L  +P+  +Y  LI    +  KV  A  V+E M   ++ PS  TI S +H          
Sbjct: 281 LGYSPNVFTYTILIDGFFNAKKVDEAFRVLETMKARKVSPSEATIRSFIHGVFRCVAPNK 340

Query: 55  ACEESYEF----------------------NLVR------RIYPMICHHNLKPNSETFRS 86
           A E + EF                      N+ R      + +  I H   KP+S TF  
Sbjct: 341 AFELAIEFIEREPVLQRLACDTLLCCLSSKNMAREAGALLKKFGKIGH---KPDSATFN- 396

Query: 87  MISLNVKIKDFD--SAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQ 144
            I++N  IK FD     ++LD   E  +    S Y A++   +    V        +M +
Sbjct: 397 -IAMNCLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALIKALYMAGKVTEGNHYFNQMVK 455

Query: 145 ANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEK 201
             +  +  +++ +I      S  +     +++++  G       F  LI+ Y   GE  K
Sbjct: 456 DGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGYCKGGEICK 515

Query: 202 ARQ-VVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--AL 258
           +R  +V+  E   K      S+++  L    +  DA+  + E+   G  L P AV    L
Sbjct: 516 SRDLLVMLLEHGFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWG--LSPNAVTYNIL 573

Query: 259 IEHLNSEGELNRLIQLLEEVH----DPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDK 314
           I  L   G++ R ++LL ++     +PD +      LI    R  ++  A  L   +   
Sbjct: 574 IHSLCIIGDVPRSMKLLRKMQTDGINPDVFSFNA--LIQSFCRMGKVEDAKKLFSSMLSL 631

Query: 315 FKDDEMAMEYHFSEIFCQ 332
               +      F ++FCQ
Sbjct: 632 GLIPDNYTYVAFIKVFCQ 649



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 81/417 (19%), Positives = 157/417 (37%), Gaps = 52/417 (12%)

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           I+  I    + P++  + ++I   VK    D AY     +   N  P    YN ++ G  
Sbjct: 204 IFGQISFLGISPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIHGVC 263

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITKY 184
           R   V  AL ++K+ME     P+  T++ LI    N    ++  +  E +K+     ++ 
Sbjct: 264 RSGVVDEALRLVKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAFRVLETMKARKVSPSEA 323

Query: 185 VFMALINAYTTCGEFEKARQVVLD--AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
              + I+    C    KA ++ ++     PV  R    + L+  L+S     +A  + ++
Sbjct: 324 TIRSFIHGVFRCVAPNKAFELAIEFIEREPVLQRLACDT-LLCCLSSKNMAREAGALLKK 382

Query: 243 IKEAG------------------------CNLEPRAV-----------IALIEHLNSEGE 267
             + G                        CN+  R V           +ALI+ L   G+
Sbjct: 383 FGKIGHKPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALIKALYMAGK 442

Query: 268 LNRLIQLLEEVHDPDYWMDGCC-RLILHCV-RFKQLSSATDLLKQLKDKFKDDEMAMEYH 325
           +        ++       + C   +++ C  +   +  AT+  K+++ K     +     
Sbjct: 443 VTEGNHYFNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVTFNT 502

Query: 326 FSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWK 385
             + +C+       ++    DLL  +  E G  P       ++     A+ ++ A   + 
Sbjct: 503 LIDGYCKGG-----EICKSRDLLVMLL-EHGFKPDIFTFSSIIDGLCRAKQIEDALGCFS 556

Query: 386 EYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKD--DPHVRFVIQACKQTY 440
           E    GL  N ++Y  +  +    G+   + KLL KM  D  +P V F   A  Q++
Sbjct: 557 EMVMWGLSPNAVTYNILIHSLCIIGDVPRSMKLLRKMQTDGINPDV-FSFNALIQSF 612


>gi|145353124|ref|NP_195209.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635623|sp|Q0WLC6.2|PP349_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g34830, chloroplastic; Flags: Precursor
 gi|332661026|gb|AEE86426.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1089

 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 129/280 (46%), Gaps = 20/280 (7%)

Query: 112 LMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY 171
           L PT S +N +M+     +D++GA  VL+ ++++ +  D + ++ LI +C+    +   +
Sbjct: 463 LNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTADCKLYTTLISSCAKSGKVDAMF 522

Query: 172 E---QLKSAGGQITKYVFMALINAYTTCGEFEKARQV--VLDAEIPVKSRSEVKSALVSA 226
           E   Q+ ++G +   + F ALI+     G+  KA     +L ++  VK    V +AL+SA
Sbjct: 523 EVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAYGILRSK-NVKPDRVVFNALISA 581

Query: 227 LASHGRTSDAIIVYEEIKEAGCNLEPR--AVIALIEHLNSEGELNRLIQLLEEVHDPDYW 284
               G    A  V  E+K     ++P   ++ AL++   + G++ R  ++ + +H   Y 
Sbjct: 582 CGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIHK--YG 639

Query: 285 MDGCCRL----ILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPD 340
           + G   +    +  C +      A  + K +K+K   D    E  FS +          D
Sbjct: 640 IRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEK---DVTPDEVFFSALIDVAGHAKMLD 696

Query: 341 VQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRA 380
              G+  LQ  K + G+         L+GAC NA+D K+A
Sbjct: 697 EAFGI--LQDAKSQ-GIRLGTISYSSLMGACCNAKDWKKA 733



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 94/202 (46%), Gaps = 7/202 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGE---LVPSTETINSILHACEESYEFN 63
           + P    +  LI+       V  A DV+ +M + E   + P   +I +++ AC  + +  
Sbjct: 568 VKPDRVVFNALISACGQSGAVDRAFDVLAEM-KAETHPIDPDHISIGALMKACCNAGQVE 626

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             + +Y MI  + ++   E +   ++   K  D+D A S+  D+KE ++ P    ++A++
Sbjct: 627 RAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALI 686

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKYYEQLKSAGGQ 180
                 K +  A  +L++ +   ++  + ++S L+  C N +D    ++ YE++KS   +
Sbjct: 687 DVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKIKSIKLR 746

Query: 181 ITKYVFMALINAYTTCGEFEKA 202
            T     ALI A     +  KA
Sbjct: 747 PTISTMNALITALCEGNQLPKA 768



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 81/418 (19%), Positives = 156/418 (37%), Gaps = 51/418 (12%)

Query: 42  LVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAY 101
           L P+  T N ++  C  S +    R +  ++    +  + + + ++IS   K    D+ +
Sbjct: 463 LNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTADCKLYTTLISSCAKSGKVDAMF 522

Query: 102 SLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC 161
            +   +    +      + A++ G  R   V  A      +   NVKPD   F+ LI  C
Sbjct: 523 EVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAYGILRSKNVKPDRVVFNALISAC 582

Query: 162 SNEEDIIKYYEQLKSAGGQI-----TKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKS 215
                + + ++ L     +            AL+ A    G+ E+A++V  +  +  ++ 
Sbjct: 583 GQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIHKYGIRG 642

Query: 216 RSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLL 275
             EV +  V++ +  G    A  +Y+++KE     +     ALI+       L+    +L
Sbjct: 643 TPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAFGIL 702

Query: 276 EEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIAT 335
           ++                  +R   +S                       +S +    A 
Sbjct: 703 QDAKS-------------QGIRLGTIS-----------------------YSSLMG--AC 724

Query: 336 TDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYN 395
            +  D +  L+L + IK  + L P+   ++ L+ A      L +A     E +  GL  N
Sbjct: 725 CNAKDWKKALELYEKIK-SIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPN 783

Query: 396 VLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQACKQTYTIPSLQKERGFEK 453
            ++Y  +  A     + + + KLLS+   D      ++  C     I SL K R FEK
Sbjct: 784 TITYSMLMLASERKDDFEVSFKLLSQAKGDGVSPNLIMCRC-----ITSLCKRR-FEK 835



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/281 (17%), Positives = 124/281 (44%), Gaps = 6/281 (2%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           KL + P+ +++  L++       +  A  V+  + +  +    +   +++ +C +S + +
Sbjct: 460 KLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTADCKLYTTLISSCAKSGKVD 519

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
            +  ++  + +  ++ N  TF ++I    +      A+     L+  N+ P   ++NA++
Sbjct: 520 AMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAYGILRSKNVKPDRVVFNALI 579

Query: 124 AGYFRKKDVQGALMVLKEM--EQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAG 178
           +   +   V  A  VL EM  E   + PD  +   L+  C N   + +    Y+ +   G
Sbjct: 580 SACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIHKYG 639

Query: 179 GQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSD-AI 237
            + T  V+   +N+ +  G+++ A  +  D +    +  EV  + +  +A H +  D A 
Sbjct: 640 IRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAF 699

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            + ++ K  G  L   +  +L+    +  +  + ++L E++
Sbjct: 700 GILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 54/271 (19%), Positives = 113/271 (41%), Gaps = 6/271 (2%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y  LI+      KV    +V  QM    +  +  T  +++  C  + +       Y ++ 
Sbjct: 505 YTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAYGILR 564

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMN--LMPTASMYNAIMAGYFRKKD 131
             N+KP+   F ++IS   +    D A+ +L ++K     + P      A+M        
Sbjct: 565 SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACCNAGQ 624

Query: 132 VQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKYYEQLKSAGGQITKYVFMA 188
           V+ A  V + + +  ++   + ++  +++CS   D       Y+ +K       +  F A
Sbjct: 625 VERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSA 684

Query: 189 LINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           LI+        ++A  ++ DA+   ++  +   S+L+ A  +      A+ +YE+IK   
Sbjct: 685 LIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKIKSIK 744

Query: 248 CNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
                  + ALI  L    +L + ++ L+E+
Sbjct: 745 LRPTISTMNALITALCEGNQLPKAMEYLDEI 775



 Score = 43.1 bits (100), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 29/145 (20%), Positives = 62/145 (42%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++TP    +  LI  +     +  A  +++      +   T + +S++ AC  + ++   
Sbjct: 674 DVTPDEVFFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKA 733

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +Y  I    L+P   T  ++I+   +      A   LD++K + L P    Y+ +M  
Sbjct: 734 LELYEKIKSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLA 793

Query: 126 YFRKKDVQGALMVLKEMEQANVKPD 150
             RK D + +  +L + +   V P+
Sbjct: 794 SERKDDFEVSFKLLSQAKGDGVSPN 818


>gi|125604707|gb|EAZ43743.1| hypothetical protein OsJ_28367 [Oryza sativa Japonica Group]
          Length = 812

 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 113/259 (43%), Gaps = 17/259 (6%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
            I+P    Y  +I    +  ++  AL  ++ M +   VP T   N++L    +  +    
Sbjct: 342 NISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERA 401

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +   +  +NL  +S T   MI    K    D A  + D++ E    PT   YNA++ G
Sbjct: 402 HTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDG 461

Query: 126 YFRKKDVQGALMVLKEMEQ-------------ANVKPDSQTFSYLIHNCSNEEDIIKYYE 172
           ++R+  ++ A M+  +ME              AN   DS++   L+H+      ++K Y+
Sbjct: 462 FYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYK 521

Query: 173 QLKSA--GGQITKYV-FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALA 228
            L+S    G +   V +  LIN        + A ++  + ++   S  E+    L+  L 
Sbjct: 522 LLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLL 581

Query: 229 SHGRTSDAIIVYEEIKEAG 247
              R +DA+++++ I ++G
Sbjct: 582 RAHRENDAMMLFQNILQSG 600



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 51/292 (17%), Positives = 116/292 (39%), Gaps = 8/292 (2%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           SS+++  L+       +   A+    +M + +  P+    N+IL A  +S    L   +Y
Sbjct: 136 SSSAFAALVAAHSSAGRNADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALY 195

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
             +      PN  T+  ++    K      A  + D++ +  +MP   +Y  +++     
Sbjct: 196 NRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNA 255

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQ---LKSAGGQITKYVF 186
             +  A+ +L  M+     PD  T++  +        + + +++   L+  G  +    +
Sbjct: 256 GKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGY 315

Query: 187 MALINAYTTCGEFEKA---RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
             LI+       F++     + +L+  I       + + ++   A  GR  DA+   + +
Sbjct: 316 SCLIDGLFQARRFDEGFGYYKTMLERNI--SPDVVLYTIMIRGCAEAGRIEDALSFLDVM 373

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHC 295
           K+ G   +      +++ L   G+L R   L  E+   +  +D   + I+ C
Sbjct: 374 KKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMIC 425



 Score = 42.4 bits (98), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 38/191 (19%), Positives = 79/191 (41%), Gaps = 4/191 (2%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
            L  +S  F ++++ +        A      + E    PTA +YN I+        +  A
Sbjct: 132 GLPASSSAFAALVAAHSSAGRNADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLA 191

Query: 136 LMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINA 192
           L +   M  A   P+  T++ L+     +    D +K ++++   G      ++  L+++
Sbjct: 192 LALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSS 251

Query: 193 YTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLE 251
               G+ ++A Q++   +       EV  +A +S L   GR ++A      +++ G  L 
Sbjct: 252 LCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALG 311

Query: 252 PRAVIALIEHL 262
            +    LI+ L
Sbjct: 312 LKGYSCLIDGL 322


>gi|110741791|dbj|BAE98839.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1089

 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 129/280 (46%), Gaps = 20/280 (7%)

Query: 112 LMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY 171
           L PT S +N +M+     +D++GA  VL+ ++++ +  D + ++ LI +C+    +   +
Sbjct: 463 LNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTADCKLYTTLISSCAKSGKVDAMF 522

Query: 172 E---QLKSAGGQITKYVFMALINAYTTCGEFEKARQV--VLDAEIPVKSRSEVKSALVSA 226
           E   Q+ ++G +   + F ALI+     G+  KA     +L ++  VK    V +AL+SA
Sbjct: 523 EVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAYGILRSK-NVKPDRVVFNALISA 581

Query: 227 LASHGRTSDAIIVYEEIKEAGCNLEPR--AVIALIEHLNSEGELNRLIQLLEEVHDPDYW 284
               G    A  V  E+K     ++P   ++ AL++   + G++ R  ++ + +H   Y 
Sbjct: 582 CGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIHK--YG 639

Query: 285 MDGCCRL----ILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPD 340
           + G   +    +  C +      A  + K +K+K   D    E  FS +          D
Sbjct: 640 IRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEK---DVTPDEVFFSALIDVAGHAKMLD 696

Query: 341 VQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRA 380
              G+  LQ  K + G+         L+GAC NA+D K+A
Sbjct: 697 EAFGI--LQDAKSQ-GIRLGTISYSSLMGACCNAKDWKKA 733



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 94/202 (46%), Gaps = 7/202 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGE---LVPSTETINSILHACEESYEFN 63
           + P    +  LI+       V  A DV+ +M + E   + P   +I +++ AC  + +  
Sbjct: 568 VKPDRVVFNALISACGQSGAVDRAFDVLAEM-KAETHPIDPDHISIGALMKACCNAGQVE 626

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             + +Y MI  + ++   E +   ++   K  D+D A S+  D+KE ++ P    ++A++
Sbjct: 627 RAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALI 686

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKYYEQLKSAGGQ 180
                 K +  A  +L++ +   ++  + ++S L+  C N +D    ++ YE++KS   +
Sbjct: 687 DVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKIKSIKLR 746

Query: 181 ITKYVFMALINAYTTCGEFEKA 202
            T     ALI A     +  KA
Sbjct: 747 PTISTMNALITALCEGNQLPKA 768



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 81/418 (19%), Positives = 156/418 (37%), Gaps = 51/418 (12%)

Query: 42  LVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAY 101
           L P+  T N ++  C  S +    R +  ++    +  + + + ++IS   K    D+ +
Sbjct: 463 LNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTADCKLYTTLISSCAKSGKVDAMF 522

Query: 102 SLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC 161
            +   +    +      + A++ G  R   V  A      +   NVKPD   F+ LI  C
Sbjct: 523 EVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAYGILRSKNVKPDRVVFNALISAC 582

Query: 162 SNEEDIIKYYEQLKSAGGQI-----TKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKS 215
                + + ++ L     +            AL+ A    G+ E+A++V  +  +  ++ 
Sbjct: 583 GQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIHKYGIRG 642

Query: 216 RSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLL 275
             EV +  V++ +  G    A  +Y+++KE     +     ALI+       L+    +L
Sbjct: 643 TPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAFGIL 702

Query: 276 EEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIAT 335
           ++                  +R   +S                       +S +    A 
Sbjct: 703 QDAKS-------------QGIRLGTIS-----------------------YSSLMG--AC 724

Query: 336 TDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYN 395
            +  D +  L+L + IK  + L P+   ++ L+ A      L +A     E +  GL  N
Sbjct: 725 CNAKDWKKALELYEKIK-SIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPN 783

Query: 396 VLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQACKQTYTIPSLQKERGFEK 453
            ++Y  +  A     + + + KLLS+   D      ++  C     I SL K R FEK
Sbjct: 784 TITYSMLMLASERKDDFEVSFKLLSQAKGDGVSPNLIMCRC-----ITSLCKRR-FEK 835



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/281 (17%), Positives = 124/281 (44%), Gaps = 6/281 (2%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           KL + P+ +++  L++       +  A  V+  + +  +    +   +++ +C +S + +
Sbjct: 460 KLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTADCKLYTTLISSCAKSGKVD 519

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
            +  ++  + +  ++ N  TF ++I    +      A+     L+  N+ P   ++NA++
Sbjct: 520 AMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAYGILRSKNVKPDRVVFNALI 579

Query: 124 AGYFRKKDVQGALMVLKEM--EQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAG 178
           +   +   V  A  VL EM  E   + PD  +   L+  C N   + +    Y+ +   G
Sbjct: 580 SACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIHKYG 639

Query: 179 GQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSD-AI 237
            + T  V+   +N+ +  G+++ A  +  D +    +  EV  + +  +A H +  D A 
Sbjct: 640 IRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAF 699

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            + ++ K  G  L   +  +L+    +  +  + ++L E++
Sbjct: 700 GILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 54/271 (19%), Positives = 113/271 (41%), Gaps = 6/271 (2%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y  LI+      KV    +V  QM    +  +  T  +++  C  + +       Y ++ 
Sbjct: 505 YTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAYGILR 564

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMN--LMPTASMYNAIMAGYFRKKD 131
             N+KP+   F ++IS   +    D A+ +L ++K     + P      A+M        
Sbjct: 565 SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACCNAGQ 624

Query: 132 VQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKYYEQLKSAGGQITKYVFMA 188
           V+ A  V + + +  ++   + ++  +++CS   D       Y+ +K       +  F A
Sbjct: 625 VERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSA 684

Query: 189 LINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           LI+        ++A  ++ DA+   ++  +   S+L+ A  +      A+ +YE+IK   
Sbjct: 685 LIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKIKSIK 744

Query: 248 CNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
                  + ALI  L    +L + ++ L+E+
Sbjct: 745 LRPTISTMNALITALCEGNQLPKAMEYLDEI 775



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/145 (20%), Positives = 62/145 (42%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++TP    +  LI  +     +  A  +++      +   T + +S++ AC  + ++   
Sbjct: 674 DVTPDEVFFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKA 733

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +Y  I    L+P   T  ++I+   +      A   LD++K + L P    Y+ +M  
Sbjct: 734 LELYEKIKSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLA 793

Query: 126 YFRKKDVQGALMVLKEMEQANVKPD 150
             RK D + +  +L + +   V P+
Sbjct: 794 SERKDDFEVSFKLLSQAKGDGVSPN 818


>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Glycine max]
          Length = 836

 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 99/450 (22%), Positives = 192/450 (42%), Gaps = 35/450 (7%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   ++   I   C   +V  A+D+  +M    + P+  T N+++    +S  F    
Sbjct: 251 VAPDVFTFTTAINAFCKGGRVGDAVDLFCKMEGLGVFPNVVTYNNVIDGLFKSGRFEEAL 310

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R    +    + P+  T+  +IS  +K++ F+ A  +L ++  M   P   ++NA++ GY
Sbjct: 311 RFKDRMVRSKVNPSVVTYGVLISGLMKLEMFEEANEVLVEMYSMGFAPNEVVFNALIDGY 370

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-C-SNE----EDIIKYYEQLKSAGGQ 180
            RK D+  AL V  EM    +KP+  TF+ L+   C SN+    E ++ Y   + S+G  
Sbjct: 371 CRKGDMGEALRVRDEMAMKGMKPNFVTFNTLLQGFCRSNQMEQAEQVLVY---ILSSGLS 427

Query: 181 ITKYVFMALINAYTTCGEFEKARQVV---LDAEIPVKSRSEVKSALVSALASHGRTSDAI 237
           +   V   +I+       F  A ++V   L   I V     + + LV  L      S+AI
Sbjct: 428 VNMDVCSYVIHRLMERSGFVSALKIVTKLLSGNIRVS--DSLLTPLVVGLCKCEGHSEAI 485

Query: 238 IVYEEIKEA-GCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILH 294
            ++ ++    G         AL+  L   G +  + ++L+++ +    +D      LI  
Sbjct: 486 ELWFKLAAVKGLAANTVTSNALLHGLCERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFG 545

Query: 295 CVRFKQLSSATDLLKQL-KDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKD 353
           C ++ ++  A  L +++ + +F+ D     Y ++ +   +A     D     D+ + + +
Sbjct: 546 CCKWGKIEEAFKLKEEMVQQEFQPD----TYTYNFLMKGLADMGKID-----DVHRLLHE 596

Query: 354 --ELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGN 411
             E G  P+      LL     A  ++ A   +K  +   +  + + Y  +  A+   GN
Sbjct: 597 AKEYGFVPNVYTYALLLEGYCKADRIEDAVKFFKNLDYEKVELSSVVYNILIAAYCRIGN 656

Query: 412 RKSASKLLSKMPKDDPHVRFVIQACKQTYT 441
              A KL     +D    R ++  C  TY+
Sbjct: 657 VTEAFKL-----RDAMKSRGILPTC-ATYS 680



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 87/199 (43%), Gaps = 3/199 (1%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           SY  LI   C   K+  A  + E+MVQ E  P T T N ++    +  + + V R+    
Sbjct: 538 SYNTLIFGCCKWGKIEEAFKLKEEMVQQEFQPDTYTYNFLMKGLADMGKIDDVHRLLHEA 597

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
             +   PN  T+  ++    K    + A     +L    +  ++ +YN ++A Y R  +V
Sbjct: 598 KEYGFVPNVYTYALLLEGYCKADRIEDAVKFFKNLDYEKVELSSVVYNILIAAYCRIGNV 657

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHN--CSNEEDIIK-YYEQLKSAGGQITKYVFMAL 189
             A  +   M+   + P   T+S LIH   C    D  K  +E++++ G     + + AL
Sbjct: 658 TEAFKLRDAMKSRGILPTCATYSSLIHGMCCIGRVDEAKEIFEEMRNEGLLPNVFCYTAL 717

Query: 190 INAYTTCGEFEKARQVVLD 208
           I  +   G+ +    ++L+
Sbjct: 718 IGGHCKLGQMDIVGSILLE 736



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 77/156 (49%), Gaps = 6/156 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P+ A+Y  LI   C + +V  A ++ E+M    L+P+     +++    +  + ++V 
Sbjct: 672 ILPTCATYSSLIHGMCCIGRVDEAKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQMDIVG 731

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            I   +  + ++PN  T+  MI    K+ +   A  LL+++    + P    YNA+  GY
Sbjct: 732 SILLEMSSNGIRPNKITYTIMIDGYCKLGNMKEARELLNEMIRNGIAPDTVTYNALQKGY 791

Query: 127 FRKKDVQGALMVLKEMEQANVK---PDSQTFSYLIH 159
            +++++    + L+   ++N+     +  T++ LIH
Sbjct: 792 CKERELT---VTLQSDHKSNIGLPLEEEITYNTLIH 824



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 69/148 (46%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           SS  Y  LI   C +  V  A  + + M    ++P+  T +S++H        +  + I+
Sbjct: 640 SSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCCIGRVDEAKEIF 699

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
             + +  L PN   + ++I  + K+   D   S+L ++    + P    Y  ++ GY + 
Sbjct: 700 EEMRNEGLLPNVFCYTALIGGHCKLGQMDIVGSILLEMSSNGIRPNKITYTIMIDGYCKL 759

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYL 157
            +++ A  +L EM +  + PD+ T++ L
Sbjct: 760 GNMKEARELLNEMIRNGIAPDTVTYNAL 787



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 88/495 (17%), Positives = 184/495 (37%), Gaps = 62/495 (12%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++ PS  +Y  LI+    L     A +V+ +M      P+    N+++       +    
Sbjct: 320 KVNPSVVTYGVLISGLMKLEMFEEANEVLVEMYSMGFAPNEVVFNALIDGYCRKGDMGEA 379

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            R+   +    +KPN  TF +++    +    + A  +L  +    L     + + ++  
Sbjct: 380 LRVRDEMAMKGMKPNFVTFNTLLQGFCRSNQMEQAEQVLVYILSSGLSVNMDVCSYVIHR 439

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQIT 182
              +     AL ++ ++   N++      + L+     C    + I+ + +L +  G   
Sbjct: 440 LMERSGFVSALKIVTKLLSGNIRVSDSLLTPLVVGLCKCEGHSEAIELWFKLAAVKGLAA 499

Query: 183 KYVFM-ALINAYTTCGEFEKARQVV---LDAEIPVKSRSEVKSALVSALASHGRTSDAII 238
             V   AL++     G  E+  +V+   L+  + +   S   + L+      G+  +A  
Sbjct: 500 NTVTSNALLHGLCERGNMEEVFEVLKQMLEKGLLLDRIS--YNTLIFGCCKWGKIEEAFK 557

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYW-----MDGCC 289
           + EE+ +     +      L++ L   G+++ + +LL E  +    P+ +     ++G C
Sbjct: 558 LKEEMVQQEFQPDTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYC 617

Query: 290 R----------------------------LILHCVRFKQLSSATDLLKQLKDKFKDDEMA 321
           +                            LI    R   ++ A  L   +K +      A
Sbjct: 618 KADRIEDAVKFFKNLDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCA 677

Query: 322 MEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAH 381
                    C I   D        ++ + +++E GL P+  C   L+G       +    
Sbjct: 678 TYSSLIHGMCCIGRVDEAK-----EIFEEMRNE-GLLPNVFCYTALIGGHCKLGQMDIVG 731

Query: 382 LIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQACKQTYT 441
            I  E  + G+  N ++Y  M   +   GN K A +LL++M ++             T T
Sbjct: 732 SILLEMSSNGIRPNKITYTIMIDGYCKLGNMKEARELLNEMIRNG--------IAPDTVT 783

Query: 442 IPSLQKERGFEKDRD 456
             +LQK  G+ K+R+
Sbjct: 784 YNALQK--GYCKERE 796


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 132/284 (46%), Gaps = 14/284 (4%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEF 62
           +L +   + ++  ++ + C   K   AL+++ QM +    P+  T N+++   C      
Sbjct: 34  RLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCSRGRVQ 89

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDD-LKEMNLMPTASMYNA 121
             +  +  M     + PN  T+ ++IS   K+   D A  + D+ L +  + P A MYNA
Sbjct: 90  AALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNA 149

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQI 181
           ++ GY  +  +  AL+    M +  V     T++ L+H    +    + YE ++  GG+ 
Sbjct: 150 LIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKG 209

Query: 182 TK---YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAI 237
                + +  LIN +   G  +KA ++  + +   V++     ++L+ AL+  G+  +  
Sbjct: 210 LAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETD 269

Query: 238 IVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVH 279
            +++E    G  + P  V+  ALI   ++ G ++R  +++ E+ 
Sbjct: 270 KLFDEAVRRG--IRPDLVLYNALINSHSTSGNIDRAFEIMGEME 311



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/308 (21%), Positives = 126/308 (40%), Gaps = 43/308 (13%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHAC---- 56
           M  K E+ P +  Y  LI   CD  K+  AL   ++MV+  +  +  T N ++HA     
Sbjct: 134 MLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDG 193

Query: 57  --EESYE----------------FNLV-------------RRIYPMICHHNLKPNSETFR 85
              E+YE                +N++               I+  +    ++    T+ 
Sbjct: 194 RGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYT 253

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           S+I    K         L D+     + P   +YNA++  +    ++  A  ++ EME+ 
Sbjct: 254 SLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKK 313

Query: 146 NVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
            + PD  T++ L+         ++  K  +++   G Q     +  LI+ Y+  G+ + A
Sbjct: 314 RIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDA 373

Query: 203 RQVVLDAEIPVKSRSE---VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALI 259
            ++    E+  K  +      +AL+  L  +G+  DA  + +E+ E G   +    I+LI
Sbjct: 374 LRI--RNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLI 431

Query: 260 EHLNSEGE 267
           E L +E E
Sbjct: 432 EGLTTEDE 439



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/171 (21%), Positives = 73/171 (42%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P    Y  LI        +  A +++ +M +  + P   T N+++         +  R
Sbjct: 280 IRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEAR 339

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           ++   +    ++P+  T+ ++IS      D   A  + +++      PT   YNA++ G 
Sbjct: 340 KLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGL 399

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA 177
            +      A  ++KEM +  + PD  T+  LI   + E++     E+L +A
Sbjct: 400 CKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTEDERAIDDERLAAA 450


>gi|110740372|dbj|BAF02081.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1089

 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 129/280 (46%), Gaps = 20/280 (7%)

Query: 112 LMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY 171
           L PT S +N +M+     +D++GA  VL+ ++++ +  D + ++ LI +C+    +   +
Sbjct: 463 LNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTADCKLYTTLISSCAKSGKVDAMF 522

Query: 172 E---QLKSAGGQITKYVFMALINAYTTCGEFEKARQV--VLDAEIPVKSRSEVKSALVSA 226
           E   Q+ ++G +   + F ALI+     G+  KA     +L ++  VK    V +AL+SA
Sbjct: 523 EVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAYGILRSK-NVKPDRVVFNALISA 581

Query: 227 LASHGRTSDAIIVYEEIKEAGCNLEPR--AVIALIEHLNSEGELNRLIQLLEEVHDPDYW 284
               G    A  V  E+K     ++P   ++ AL++   + G++ R  ++ + +H   Y 
Sbjct: 582 CGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIHK--YG 639

Query: 285 MDGCCRL----ILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPD 340
           + G   +    +  C +      A  + K +K+K   D    E  FS +          D
Sbjct: 640 IRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEK---DVTPDEVFFSALIDVAGHAKMLD 696

Query: 341 VQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRA 380
              G+  LQ  K + G+         L+GAC NA+D K+A
Sbjct: 697 EAFGI--LQDAKSQ-GIRLGTISYSSLMGACCNAKDWKKA 733



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 94/202 (46%), Gaps = 7/202 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGE---LVPSTETINSILHACEESYEFN 63
           + P    +  LI+       V  A DV+ +M + E   + P   +I +++ AC  + +  
Sbjct: 568 VKPDRVVFNALISACGQSGAVDRAFDVLAEM-KAETHPIDPDHISIGALMKACCNAGQVE 626

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             + +Y MI  + ++   E +   ++   K  D+D A S+  D+KE ++ P    ++A++
Sbjct: 627 RAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALI 686

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKYYEQLKSAGGQ 180
                 K +  A  +L++ +   ++  + ++S L+  C N +D    ++ YE++KS   +
Sbjct: 687 DVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKIKSIKLR 746

Query: 181 ITKYVFMALINAYTTCGEFEKA 202
            T     ALI A     +  KA
Sbjct: 747 PTISTMNALITALCEGNQLPKA 768



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 81/418 (19%), Positives = 156/418 (37%), Gaps = 51/418 (12%)

Query: 42  LVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAY 101
           L P+  T N ++  C  S +    R +  ++    +  + + + ++IS   K    D+ +
Sbjct: 463 LNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTADCKLYTTLISSCAKSGKVDAMF 522

Query: 102 SLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC 161
            +   +    +      + A++ G  R   V  A      +   NVKPD   F+ LI  C
Sbjct: 523 EVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAYGILRSKNVKPDRVVFNALISAC 582

Query: 162 SNEEDIIKYYEQLKSAGGQI-----TKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKS 215
                + + ++ L     +            AL+ A    G+ E+A++V  +  +  ++ 
Sbjct: 583 GQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIHKYGIRG 642

Query: 216 RSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLL 275
             EV +  V++ +  G    A  +Y+++KE     +     ALI+       L+    +L
Sbjct: 643 TPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAFGIL 702

Query: 276 EEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIAT 335
           ++                  +R   +S                       +S +    A 
Sbjct: 703 QDAKS-------------QGIRLGTIS-----------------------YSSLMG--AC 724

Query: 336 TDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYN 395
            +  D +  L+L + IK  + L P+   ++ L+ A      L +A     E +  GL  N
Sbjct: 725 CNAKDWKKALELYEKIK-SIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPN 783

Query: 396 VLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQACKQTYTIPSLQKERGFEK 453
            ++Y  +  A     + + + KLLS+   D      ++  C     I SL K R FEK
Sbjct: 784 TITYSMLMLASERKDDFEVSFKLLSQAKGDGVSPNLIMCRC-----ITSLCKRR-FEK 835



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/281 (17%), Positives = 124/281 (44%), Gaps = 6/281 (2%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           KL + P+ +++  L++       +  A  V+  + +  +    +   +++ +C +S + +
Sbjct: 460 KLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTADCKLYTTLISSCAKSGKVD 519

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
            +  ++  + +  ++ N  TF ++I    +      A+     L+  N+ P   ++NA++
Sbjct: 520 AMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAYGILRSKNVKPDRVVFNALI 579

Query: 124 AGYFRKKDVQGALMVLKEM--EQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAG 178
           +   +   V  A  VL EM  E   + PD  +   L+  C N   + +    Y+ +   G
Sbjct: 580 SACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIHKYG 639

Query: 179 GQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSD-AI 237
            + T  V+   +N+ +  G+++ A  +  D +    +  EV  + +  +A H +  D A 
Sbjct: 640 IRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAF 699

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            + ++ K  G  L   +  +L+    +  +  + ++L E++
Sbjct: 700 GILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 54/271 (19%), Positives = 113/271 (41%), Gaps = 6/271 (2%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y  LI+      KV    +V  QM    +  +  T  +++  C  + +       Y ++ 
Sbjct: 505 YTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAYGILR 564

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMN--LMPTASMYNAIMAGYFRKKD 131
             N+KP+   F ++IS   +    D A+ +L ++K     + P      A+M        
Sbjct: 565 SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACCNAGQ 624

Query: 132 VQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKYYEQLKSAGGQITKYVFMA 188
           V+ A  V + + +  ++   + ++  +++CS   D       Y+ +K       +  F A
Sbjct: 625 VERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSA 684

Query: 189 LINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           LI+        ++A  ++ DA+   ++  +   S+L+ A  +      A+ +YE+IK   
Sbjct: 685 LIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKIKSIK 744

Query: 248 CNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
                  + ALI  L    +L + ++ L+E+
Sbjct: 745 LRPTISTMNALITALCEGNQLPKAMEYLDEI 775



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/145 (20%), Positives = 62/145 (42%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++TP    +  LI  +     +  A  +++      +   T + +S++ AC  + ++   
Sbjct: 674 DVTPDEVFFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKA 733

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +Y  I    L+P   T  ++I+   +      A   LD++K + L P    Y+ +M  
Sbjct: 734 LELYEKIKSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLA 793

Query: 126 YFRKKDVQGALMVLKEMEQANVKPD 150
             RK D + +  +L + +   V P+
Sbjct: 794 SERKDDFEVSFKLLSQAKGDGVSPN 818


>gi|224087027|ref|XP_002308034.1| predicted protein [Populus trichocarpa]
 gi|222854010|gb|EEE91557.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 106/224 (47%), Gaps = 19/224 (8%)

Query: 51  SILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEM 110
           +IL  C E    +L  +I+ ++       +     ++I L  K K+F SA ++ + L   
Sbjct: 213 TILDGCSECKNLDLGTQIHGLVIKLGYPCDINIGTALIDLYAKCKNFQSARTVFNGLSPR 272

Query: 111 NLMPTASMYNAIMAGYFRK-KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK 169
           +   TAS +NAI+ G+     + +  ++ L ++  A +KPDS +FS L+   +N   ++K
Sbjct: 273 S---TAS-FNAILVGFIENDSNEEDPMVFLSQLRLAGIKPDSVSFSRLLSLSANRASLVK 328

Query: 170 -----YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--A 222
                 Y       G I+  V  ALI  Y  CG  E A Q          S ++  S  A
Sbjct: 329 GRGLHAYSIKTGFAGHIS--VSNALITMYAKCGIVEDAYQA-----FNSMSANDCISWNA 381

Query: 223 LVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
           ++SA + HG+   A+++Y+E++E G   +   ++ +++     G
Sbjct: 382 IISAYSLHGQGEKALLLYQEMEEKGFTPDEITILVILQACTYSG 425


>gi|115477950|ref|NP_001062570.1| Os09g0110200 [Oryza sativa Japonica Group]
 gi|46806362|dbj|BAD17538.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|46806431|dbj|BAD17588.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|113630803|dbj|BAF24484.1| Os09g0110200 [Oryza sativa Japonica Group]
          Length = 794

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 113/259 (43%), Gaps = 17/259 (6%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
            I+P    Y  +I    +  ++  AL  ++ M +   VP T   N++L    +  +    
Sbjct: 342 NISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERA 401

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +   +  +NL  +S T   MI    K    D A  + D++ E    PT   YNA++ G
Sbjct: 402 HTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDG 461

Query: 126 YFRKKDVQGALMVLKEMEQ-------------ANVKPDSQTFSYLIHNCSNEEDIIKYYE 172
           ++R+  ++ A M+  +ME              AN   DS++   L+H+      ++K Y+
Sbjct: 462 FYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYK 521

Query: 173 QLKSA--GGQITKYV-FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALA 228
            L+S    G +   V +  LIN        + A ++  + ++   S  E+    L+  L 
Sbjct: 522 LLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLL 581

Query: 229 SHGRTSDAIIVYEEIKEAG 247
              R +DA+++++ I ++G
Sbjct: 582 RAHRENDAMMLFQNILQSG 600



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 51/292 (17%), Positives = 116/292 (39%), Gaps = 8/292 (2%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           SS+++  L+       +   A+    +M + +  P+    N+IL A  +S    L   +Y
Sbjct: 136 SSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALY 195

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
             +      PN  T+  ++    K      A  + D++ +  +MP   +Y  +++     
Sbjct: 196 NRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNA 255

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQ---LKSAGGQITKYVF 186
             +  A+ +L  M+     PD  T++  +        + + +++   L+  G  +    +
Sbjct: 256 GKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGY 315

Query: 187 MALINAYTTCGEFEKA---RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
             LI+       F++     + +L+  I       + + ++   A  GR  DA+   + +
Sbjct: 316 SCLIDGLFQARRFDEGFGYYKTMLERNI--SPDVVLYTIMIRGCAEAGRIEDALSFLDVM 373

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHC 295
           K+ G   +      +++ L   G+L R   L  E+   +  +D   + I+ C
Sbjct: 374 KKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMIC 425



 Score = 42.7 bits (99), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 38/191 (19%), Positives = 79/191 (41%), Gaps = 4/191 (2%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
            L  +S  F ++++ +        A      + E    PTA +YN I+        +  A
Sbjct: 132 GLPASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLA 191

Query: 136 LMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINA 192
           L +   M  A   P+  T++ L+     +    D +K ++++   G      ++  L+++
Sbjct: 192 LALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSS 251

Query: 193 YTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLE 251
               G+ ++A Q++   +       EV  +A +S L   GR ++A      +++ G  L 
Sbjct: 252 LCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALG 311

Query: 252 PRAVIALIEHL 262
            +    LI+ L
Sbjct: 312 LKGYSCLIDGL 322


>gi|357140623|ref|XP_003571864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37230-like [Brachypodium distachyon]
          Length = 751

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/283 (21%), Positives = 129/283 (45%), Gaps = 18/283 (6%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L IT ++ SY  ++       +  +A  +   M+   + P   T N+++     S +  
Sbjct: 204 ELGITRTALSYNAVLKAILCRGREAMARRIYNAMIADGVAPDLSTYNTLIWGFGLSEKME 263

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              R++  +  H + P+  T+ ++I+  V+  D +SA  + D++        +  YN ++
Sbjct: 264 AAVRVFGDMKGHGVTPDVTTYNNLINAWVRNGDLESARKVFDEMPGAGFERNSVSYNVMI 323

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEEDIIKYYEQLKS-AGGQI 181
            GY   K V+ A+ + KEM +  ++   +TF+ L+   C ++    +  + ++  A  ++
Sbjct: 324 KGYVEAKKVEEAVGLFKEMGEKGLRSSEKTFAALMPGLCDDQGRTAEARKAVEDMAERRL 383

Query: 182 T---KYVFMALINAYTTCGEFEKARQVVLDA----EIPVKSRSEVKSALVSALASHGRTS 234
           T   K VF+ L+      G+ + A +V   +     + V  R      L+ +L + G+  
Sbjct: 384 TPKDKTVFLRLVTTLCKAGDLDGALEVHKKSGQFKHVLVDPRQ--YGVLMQSLCAGGKCD 441

Query: 235 DAIIVYEEIKEAGCNLEPRAVI-------ALIEHLNSEGELNR 270
            A+ V +E+ E G  L P++ +        +IE+L + G   +
Sbjct: 442 GAVEVLDELLEKGTLLSPKSPVLEAPAYNPVIEYLCNNGNTKK 484



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 40/191 (20%), Positives = 80/191 (41%), Gaps = 4/191 (2%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
           ++ P+  T  ++++   K +    A  L   + E+ +  TA  YNA++     +     A
Sbjct: 171 SVSPDEATVAALVAAYGKARIPQEAVKLFRLMPELGITRTALSYNAVLKAILCRGREAMA 230

Query: 136 LMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINA 192
             +   M    V PD  T++ LI      E +   ++ +  +K  G       +  LINA
Sbjct: 231 RRIYNAMIADGVAPDLSTYNTLIWGFGLSEKMEAAVRVFGDMKGHGVTPDVTTYNNLINA 290

Query: 193 YTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLE 251
           +   G+ E AR+V  +       R+ V  + ++       +  +A+ +++E+ E G    
Sbjct: 291 WVRNGDLESARKVFDEMPGAGFERNSVSYNVMIKGYVEAKKVEEAVGLFKEMGEKGLRSS 350

Query: 252 PRAVIALIEHL 262
            +   AL+  L
Sbjct: 351 EKTFAALMPGL 361


>gi|255660876|gb|ACU25607.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 484

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 145/333 (43%), Gaps = 32/333 (9%)

Query: 36  QMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIK 95
           +M+   + P+  T N ++     S +     R +  +    + P+  T+ +MI+   ++K
Sbjct: 140 KMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVK 199

Query: 96  DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFS 155
             + A     ++K  N+ PT   Y  ++ GY     V  AL +++EM+ + +KP++ T+S
Sbjct: 200 KMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGSGIKPNAITYS 259

Query: 156 YLIHNCSNEEDIIKYYEQLKSAGGQITKY-------VFMALINAYTTCGEFEKARQVVLD 208
            L+    N E + +    LK     + KY       +FM LI+++   G  + A   VL 
Sbjct: 260 TLLPGLCNAEKMSEARVILKE---MMDKYLAPTDNSIFMRLISSHCKSGNLDAAAD-VLK 315

Query: 209 AEIPVKSRSEVK--SALVSALASHGRTSDAIIVYEEIKE--------AGCNLEPRAVIAL 258
           A I +   +E      L+      G+   A+ + +++ E        +  +LEP A   +
Sbjct: 316 AMIRLSVPTEAGHYGLLIEKFCKAGQYDKAVKLLDKLIEKDIILRPQSTLHLEPNAYNPM 375

Query: 259 IEHLNSEGELNRLIQLLEE-----VHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKD 313
           IE+L + G+ ++   L+ +     V DP         LI    +     SA +LLK +  
Sbjct: 376 IEYLCNNGQASKAETLVRQLMKLGVQDP----TALNTLIRGHSQEGSPDSAFELLKIMLR 431

Query: 314 KFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLD 346
           +  D E +   + S +   +   +P D +  LD
Sbjct: 432 RKVDSEKSA--YNSLVQSYLKKNEPXDAKAALD 462



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 128/286 (44%), Gaps = 20/286 (6%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P+  ++  +I       KV  A    E M   E+ P   T N++++      +     
Sbjct: 146 IEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAE 205

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           + +  +   N++P   T+ ++I   V +   D A  L++++K   + P A  Y+ ++ G 
Sbjct: 206 KYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGSGIKPNAITYSTLLPGL 265

Query: 127 FRKKDVQGALMVLKEMEQANVKP-DSQTFSYLIH------NCSNEEDIIKYYEQLKSAGG 179
              + +  A ++LKEM    + P D+  F  LI       N     D++K   +L S   
Sbjct: 266 CNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRL-SVPT 324

Query: 180 QITKYVFMALINAYTTCGEFEKARQV---VLDAEIPVKSRSEVK------SALVSALASH 230
           +   Y    LI  +   G+++KA ++   +++ +I ++ +S +       + ++  L ++
Sbjct: 325 EAGHYGL--LIEKFCKAGQYDKAVKLLDKLIEKDIILRPQSTLHLEPNAYNPMIEYLCNN 382

Query: 231 GRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276
           G+ S A  +  ++ + G   +P A+  LI   + EG  +   +LL+
Sbjct: 383 GQASKAETLVRQLMKLGVQ-DPTALNTLIRGHSQEGSPDSAFELLK 427


>gi|222422989|dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
          Length = 536

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 112/252 (44%), Gaps = 5/252 (1%)

Query: 2   HAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYE 61
           H + +    + ++  LI   C + K   AL+++  M      P   T N+++    +S E
Sbjct: 197 HLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNE 256

Query: 62  FNLVRRIYPMICHHNL-KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
            N    ++  +   ++  P+  T+ SMIS   K      A SLLDD+  + + PT   +N
Sbjct: 257 LNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFN 316

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSA 177
            ++ GY +  ++  A  +  +M      PD  TF+ LI        +    + +E++ + 
Sbjct: 317 VLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNAR 376

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDA 236
           G     + +  LINA        KAR+++   A   +  +  + + ++      G+ ++A
Sbjct: 377 GMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEA 436

Query: 237 IIVYEEIKEAGC 248
            ++ EE+++  C
Sbjct: 437 NVIVEEMEKKKC 448



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 72/155 (46%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L I P++ ++  L+       ++  A ++  +M+     P   T  S++       + +
Sbjct: 305 RLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVS 364

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              R++  +    + PN+ T+  +I+          A  LL  L   +++P   MYN ++
Sbjct: 365 QGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVI 424

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            G+ +   V  A ++++EME+   KPD  TF+ LI
Sbjct: 425 DGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILI 459


>gi|326508466|dbj|BAJ95755.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 438

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 116/254 (45%), Gaps = 19/254 (7%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYE-----FNL 64
           + ASY   +  +    +   A +++  ++ G   P  +  N+ L  C +        F++
Sbjct: 143 APASYIAALNAASSGKRPVAAENLIHDVLAGACPPDLQLFNACLRFCCDRRSLFPIAFDM 202

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVK--------IKDFDSAYSLLDDLKEMNLMPTA 116
             ++  +  +   +PN ETF  ++S  V+        +    +  SL   +K   ++P  
Sbjct: 203 FNKMRALPANAGCRPNVETFTLLLSTVVRRVRRPPASLVYLHAVRSLSRQMKATGVVPDT 262

Query: 117 SMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQ 173
            + N I+  Y R  +V  AL V +EM   + +P+  T+ Y++         ++ + Y ++
Sbjct: 263 YLLNLIIKAYGRCLEVDDALKVFREMPLYSCEPNEFTYGYIVKAMFQKGRTDNGLAYLKE 322

Query: 174 LKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHG 231
           ++  G   +  V+M+ + A      FE++R+V+LD  +  K + ++ +   L+  L    
Sbjct: 323 MREKGFVPSGGVYMSAVAALALEWRFEESREVLLDM-LDSKRKPDMITYRTLLEELCRAT 381

Query: 232 RTSDAIIVYEEIKE 245
           RT DA  + EE+KE
Sbjct: 382 RTEDAFQLLEELKE 395


>gi|297798436|ref|XP_002867102.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297312938|gb|EFH43361.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1094

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 128/280 (45%), Gaps = 20/280 (7%)

Query: 112 LMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY 171
           L PT S +N +M+     +D++GA  VL+ ++++ +  D + ++ LI +C+    +   +
Sbjct: 468 LNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTADCKLYTTLISSCAKSGKVDAMF 527

Query: 172 E---QLKSAGGQITKYVFMALINAYTTCGEFEKARQV--VLDAEIPVKSRSEVKSALVSA 226
           E   Q+ ++G +   + F ALI+     G+  KA     +L ++  VK    V +AL+SA
Sbjct: 528 EVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAYGILRSK-NVKPDRVVFNALISA 586

Query: 227 LASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYW 284
               G    A  V  E+K     ++P  +   AL++   + G++ R  ++ + +H   Y 
Sbjct: 587 CGQSGAVDRAFDVLAEMKAETHPIDPDHITIGALMKACCNAGQVERAKEVYQMIHK--YG 644

Query: 285 MDGCCRL----ILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPD 340
           + G   +    +  C +      A  + K +K+K   D    E  FS +          D
Sbjct: 645 IRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEK---DVTPDEVFFSALIDVAGHAKMLD 701

Query: 341 VQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRA 380
              G+  LQ  K + G+         L+GAC NA+D K+A
Sbjct: 702 EAFGI--LQDAKSQ-GIRLGTVSYSSLMGACCNAKDWKKA 738



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 82/418 (19%), Positives = 158/418 (37%), Gaps = 51/418 (12%)

Query: 42  LVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAY 101
           L P+  T N ++  C  S +    R +  ++    +  + + + ++IS   K    D+ +
Sbjct: 468 LNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTADCKLYTTLISSCAKSGKVDAMF 527

Query: 102 SLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC 161
            +   +    +      + A++ G  R   V  A      +   NVKPD   F+ LI  C
Sbjct: 528 EVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAYGILRSKNVKPDRVVFNALISAC 587

Query: 162 SNEEDIIKYYEQLKSAGGQI-----TKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKS 215
                + + ++ L     +            AL+ A    G+ E+A++V  +  +  ++ 
Sbjct: 588 GQSGAVDRAFDVLAEMKAETHPIDPDHITIGALMKACCNAGQVERAKEVYQMIHKYGIRG 647

Query: 216 RSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLL 275
             EV +  V++ +  G    A  +Y+++KE     +     ALI+       L+    +L
Sbjct: 648 TPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAFGIL 707

Query: 276 EEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIAT 335
           ++                  +R   +S                       +S +    A 
Sbjct: 708 QDAKS-------------QGIRLGTVS-----------------------YSSLMG--AC 729

Query: 336 TDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYN 395
            +  D +  L+L + IK  + L P+   ++ L+ A      L +A     E +  GL  N
Sbjct: 730 CNAKDWKKALELYEKIK-LIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPN 788

Query: 396 VLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQACKQTYTIPSLQKERGFEK 453
            ++Y  +  A     + + + KLLS+  +D     F++  C     I SL K R FEK
Sbjct: 789 TITYSMLMLASERKDDFEVSFKLLSQAKEDGISPNFIMCRC-----ITSLCKRR-FEK 840



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 93/202 (46%), Gaps = 7/202 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGE---LVPSTETINSILHACEESYEFN 63
           + P    +  LI+       V  A DV+ +M + E   + P   TI +++ AC  + +  
Sbjct: 573 VKPDRVVFNALISACGQSGAVDRAFDVLAEM-KAETHPIDPDHITIGALMKACCNAGQVE 631

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             + +Y MI  + ++   E +   ++   K  D+D A S+  D+KE ++ P    ++A++
Sbjct: 632 RAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALI 691

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKYYEQLKSAGGQ 180
                 K +  A  +L++ +   ++  + ++S L+  C N +D    ++ YE++K    +
Sbjct: 692 DVAGHAKMLDEAFGILQDAKSQGIRLGTVSYSSLMGACCNAKDWKKALELYEKIKLIKLR 751

Query: 181 ITKYVFMALINAYTTCGEFEKA 202
            T     ALI A     +  KA
Sbjct: 752 PTISTMNALITALCEGNQLPKA 773



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/281 (18%), Positives = 124/281 (44%), Gaps = 6/281 (2%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           KL + P+ +++  L++       +  A  V+  + +  +    +   +++ +C +S + +
Sbjct: 465 KLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTADCKLYTTLISSCAKSGKVD 524

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
            +  ++  + +  ++ N  TF ++I    +      A+     L+  N+ P   ++NA++
Sbjct: 525 AMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAYGILRSKNVKPDRVVFNALI 584

Query: 124 AGYFRKKDVQGALMVLKEM--EQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAG 178
           +   +   V  A  VL EM  E   + PD  T   L+  C N   + +    Y+ +   G
Sbjct: 585 SACGQSGAVDRAFDVLAEMKAETHPIDPDHITIGALMKACCNAGQVERAKEVYQMIHKYG 644

Query: 179 GQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSD-AI 237
            + T  V+   +N+ +  G+++ A  +  D +    +  EV  + +  +A H +  D A 
Sbjct: 645 IRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAF 704

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            + ++ K  G  L   +  +L+    +  +  + ++L E++
Sbjct: 705 GILQDAKSQGIRLGTVSYSSLMGACCNAKDWKKALELYEKI 745



 Score = 42.7 bits (99), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 28/145 (19%), Positives = 63/145 (43%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++TP    +  LI  +     +  A  +++      +   T + +S++ AC  + ++   
Sbjct: 679 DVTPDEVFFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTVSYSSLMGACCNAKDWKKA 738

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +Y  I    L+P   T  ++I+   +      A   LD++K + L P    Y+ +M  
Sbjct: 739 LELYEKIKLIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLA 798

Query: 126 YFRKKDVQGALMVLKEMEQANVKPD 150
             RK D + +  +L + ++  + P+
Sbjct: 799 SERKDDFEVSFKLLSQAKEDGISPN 823



 Score = 39.7 bits (91), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 41/207 (19%), Positives = 82/207 (39%), Gaps = 37/207 (17%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSI-LHACEESYEFNLV 65
           I P   +   L+   C+  +V  A +V  QM+    +  T  + +I +++C +S +++  
Sbjct: 610 IDPDHITIGALMKACCNAGQVERAKEVY-QMIHKYGIRGTPEVYTIAVNSCSKSGDWDFA 668

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKE---------------- 109
             IY  +   ++ P+   F ++I +    K  D A+ +L D K                 
Sbjct: 669 CSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTVSYSSLMGA 728

Query: 110 -------------------MNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD 150
                              + L PT S  NA++        +  A+  L E++   +KP+
Sbjct: 729 CCNAKDWKKALELYEKIKLIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPN 788

Query: 151 SQTFSYLIHNCSNEEDIIKYYEQLKSA 177
           + T+S L+     ++D    ++ L  A
Sbjct: 789 TITYSMLMLASERKDDFEVSFKLLSQA 815



 Score = 39.3 bits (90), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 53/115 (46%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
            + SY  L+   C+      AL++ E++   +L P+  T+N+++ A  E  +        
Sbjct: 718 GTVSYSSLMGACCNAKDWKKALELYEKIKLIKLRPTISTMNALITALCEGNQLPKAMEYL 777

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
             I    LKPN+ T+  ++  + +  DF+ ++ LL   KE  + P   M   I +
Sbjct: 778 DEIKTLGLKPNTITYSMLMLASERKDDFEVSFKLLSQAKEDGISPNFIMCRCITS 832


>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 977

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/298 (20%), Positives = 130/298 (43%), Gaps = 17/298 (5%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+   Y  LI       +   A+ V+++M +  + P T   NS++    ++ + +  R  
Sbjct: 453 PNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSF 512

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +  +  KP++ T+ + IS  ++  +F SA   + ++ E  ++P   +   ++  Y +
Sbjct: 513 LLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCK 572

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKYV 185
           K  V  A    + M +  +  D++T++ L++         D  + + +++  G     + 
Sbjct: 573 KGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFS 632

Query: 186 FMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +  LI+ ++  G  +KA  +  +  +  + S   + + L+      G    A  + +E+ 
Sbjct: 633 YGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEM- 691

Query: 245 EAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVH----DPDYW-----MDGCCRL 291
            +G    P AV    +I+     G+L    QL +E+      PD +     +DGCCRL
Sbjct: 692 -SGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRL 748



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 124/303 (40%), Gaps = 19/303 (6%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P   SY  LI     L  +  A  + ++MVQ  L  +    N +L     S E    +
Sbjct: 626 IAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAK 685

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +      PN+ T+ ++I    K  D   A+ L D++K   L+P + +Y  ++ G 
Sbjct: 686 ELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGC 745

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAG----G 179
            R  DV+ A+ +  E  +      S  F+ LI+        E       +L        G
Sbjct: 746 CRLNDVERAITIF-ETNEKGCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKFG 804

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAII 238
           +     +  +I+     G  E A+++    +      + +  ++L++     GR S+   
Sbjct: 805 KPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFS 864

Query: 239 VYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC------CR 290
           V++E+  AG  +EP  ++   +I     EG   + + LL+++   +   DGC      CR
Sbjct: 865 VFDEVIAAG--IEPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSISTCR 922

Query: 291 LIL 293
            +L
Sbjct: 923 ALL 925



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/368 (18%), Positives = 150/368 (40%), Gaps = 22/368 (5%)

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           + ++  +    + P +  + S+I    + K+    Y LL ++K+ N++ +   Y   + G
Sbjct: 370 KALFDGMITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKG 429

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQIT 182
                D+ GA  ++KEM  +  +P+   ++ LI      S   D ++  ++++  G    
Sbjct: 430 MCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPD 489

Query: 183 KYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
            + + +LI   +   + ++AR  +L+  E   K  +    A +S     G  + A    +
Sbjct: 490 TFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVK 549

Query: 242 EIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL--HCVR 297
           E+ E  C + P  V+   LI     +G++         + +     D     +L    V+
Sbjct: 550 EMLE--CGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVK 607

Query: 298 FKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDEL-- 355
             +++ A ++  +++ K    ++       + F ++                 I DE+  
Sbjct: 608 NGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASS---------IFDEMVQ 658

Query: 356 -GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKS 414
            GL  +    + LLG    + ++++A  +  E    G P N ++Y  +   +  SG+   
Sbjct: 659 AGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAE 718

Query: 415 ASKLLSKM 422
           A +L  +M
Sbjct: 719 AFQLFDEM 726



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 87/211 (41%), Gaps = 11/211 (5%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQG---ELVPSTETINSILHACEESYEFN 63
           + P S  Y  L+   C L  V  A+ + E   +G      P    IN +    +     +
Sbjct: 731 LVPDSFVYTTLVDGCCRLNDVERAITIFETNEKGCASSSAPFNALINWVFKFGKTELTTD 790

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
           ++ R+         KPN  T+  MI    K  + ++A  L   +++ NLMPT   Y +++
Sbjct: 791 MINRLMDGSFDKFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLL 850

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK--------YYEQLK 175
            GY +         V  E+  A ++PD+  +S +I+    E    K        + +   
Sbjct: 851 NGYDKMGRRSEMFSVFDEVIAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAV 910

Query: 176 SAGGQITKYVFMALINAYTTCGEFEKARQVV 206
             G +++     AL++ +   GE E A +VV
Sbjct: 911 DDGCKLSISTCRALLSGFAKVGEMEVAEKVV 941



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 76/425 (17%), Positives = 163/425 (38%), Gaps = 18/425 (4%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + PS  SY  LI   C   ++  A  ++ +M    L       + ++    +    +   
Sbjct: 276 LVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSILIDGLLKGRNADAAN 335

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +  H    +   +   I +  K    + A +L D +    + P A  Y +++ G+
Sbjct: 336 GLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYASLIEGF 395

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK--- 183
           FR+K+V+    +L E+++ N+     T+   +    +  D+   Y  +K  G    +   
Sbjct: 396 FREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNV 455

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
            ++  LI  +     F  A +V+ +  E  +   +   ++L+  L+   +  +A     E
Sbjct: 456 VIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLE 515

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYWMDGCCRLI-LHCVR 297
           + E G   +     A I      GE     + ++E+ +    P+  +  C  LI  +C +
Sbjct: 516 MVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVL--CTGLINEYCKK 573

Query: 298 FKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGL 357
            K + + +     ++     D        + +       D  ++         ++ + G+
Sbjct: 574 GKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEI------FHEMRGK-GI 626

Query: 358 PPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASK 417
            P       L+       ++++A  I+ E   AGL  NV+ Y  +   F  SG  + A +
Sbjct: 627 APDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKE 686

Query: 418 LLSKM 422
           LL +M
Sbjct: 687 LLDEM 691



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 95/475 (20%), Positives = 171/475 (36%), Gaps = 95/475 (20%)

Query: 41  ELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS----------- 89
           +LVPS    N +L A  +    +L   +Y  +   N+  + +++  +I            
Sbjct: 184 DLVPSLARCNHLLDALLKRNRLDLFWDVYKGMVERNVVFDVQSYEMLIGAHCRDGNVQLA 243

Query: 90  ----------LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVL 139
                     L     + D A  L   +    L+P+   YN ++ G  ++K ++ A  +L
Sbjct: 244 KDVLLKTEEELGTATLNVDEALELKKSMSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLL 303

Query: 140 KEMEQANVKPDSQTFSYLI---------------------HNCSNEEDIIKYYEQLKSAG 178
            EM    +  D+  +S LI                     H  S +  +  Y+  + S  
Sbjct: 304 VEMNSVGLFADNVAYSILIDGLLKGRNADAANGLVHEMVSHGFSIDPMMYDYFICVMSKE 363

Query: 179 GQI--TKYVFMALINAYTTCGE---------FEKARQVVLDAE--IPVKSRSEVKS---- 221
           G +   K +F  +I    T G          F + + V    E  + +K R+ V S    
Sbjct: 364 GAMEKAKALFDGMITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTY 423

Query: 222 -ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEV 278
              V  + S G    A  + +E+  +GC   P  VI   LI+    +      +++L+E+
Sbjct: 424 GTAVKGMCSSGDLDGAYNIVKEMGASGC--RPNVVIYTTLIKTFLQKSRFGDAVRVLKEM 481

Query: 279 HDPDYWMDGCC--RLILHCVRFKQLSSATD-LLKQLKDKFKDDEMAMEYHFSEIF--CQI 333
            +     D  C   LI+   + K++  A   LL+ +++ FK D        S      + 
Sbjct: 482 REQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEF 541

Query: 334 ATTDP-----------PDVQIGLDLL-QFIKD--------------ELGLPPSRKCLDFL 367
           A+ D            P+  +   L+ ++ K               E G+    K    L
Sbjct: 542 ASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVL 601

Query: 368 LGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           +   V    +  A  I+ E    G+  +V SY  +   F   GN + AS +  +M
Sbjct: 602 MNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEM 656


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/285 (21%), Positives = 125/285 (43%), Gaps = 7/285 (2%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQ---GELVPSTETINSILHACEES 59
            +L   P   SY  L+   CD  +   AL+++  M     G   P   + N++L+   + 
Sbjct: 155 TELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKE 214

Query: 60  YEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMY 119
            + +     Y  +    + P+  T+ S+I+   K +  D A  +L+ + +  +MP    Y
Sbjct: 215 GDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTY 274

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSN--EEDIIKYYEQLKS 176
           N+I+ GY      + A+  LK+M    V+P+  T+S L++  C N    +  K ++ +  
Sbjct: 275 NSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTK 334

Query: 177 AGGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSD 235
            G +     +  L+  Y T G   +   ++ L     ++    V + L+ A A   +   
Sbjct: 335 RGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQ 394

Query: 236 AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           A++V+ ++++ G N        +I+ L   G ++  +   E++ D
Sbjct: 395 AMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMID 439



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/265 (17%), Positives = 119/265 (44%), Gaps = 12/265 (4%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           +  +I   C   +V  +  + + MV+  + P   T N+++  C  + + +   ++   + 
Sbjct: 484 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMV 543

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
              +KP+  T+ ++I+   ++   D A +L  ++    + P    YN I+ G F  +   
Sbjct: 544 SVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTA 603

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYVFMALI 190
            A  +   + ++  + +  T++ ++H  C N   ++ ++ ++ L     Q+    F  +I
Sbjct: 604 AAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMI 663

Query: 191 NAYTTCGEFEKARQVV----LDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
            A   CG  ++A+ +      +  +P V++ S +   L+      G   +   ++  ++E
Sbjct: 664 GALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLI----EQGSLEELDDLFLSMEE 719

Query: 246 AGCNLEPRAVIALIEHLNSEGELNR 270
            GC+ + R + +++  L   G++ R
Sbjct: 720 NGCSADSRMLNSIVRKLLQRGDITR 744



 Score = 42.4 bits (98), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 55/261 (21%), Positives = 101/261 (38%), Gaps = 10/261 (3%)

Query: 1   MHAKLE------ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILH 54
           MHA L+      I P    +  LI       KV  A+ V  +M Q  L P+     +++ 
Sbjct: 360 MHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVID 419

Query: 55  ACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMP 114
              +S   +     +  +    L PN   + S+I        +D A  L+ ++ +  +  
Sbjct: 420 VLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICL 479

Query: 115 TASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYY 171
               +N+I+  + ++  V  +  +   M +  VKPD  T++ LI  C      ++  K  
Sbjct: 480 NTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLL 539

Query: 172 EQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASH 230
             + S G +     +  LIN Y      + A  +  +     V       + ++  L   
Sbjct: 540 ASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHT 599

Query: 231 GRTSDAIIVYEEIKEAGCNLE 251
            RT+ A  +Y  I ++G  LE
Sbjct: 600 RRTAAAKELYVSITKSGTQLE 620


>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 93/210 (44%), Gaps = 5/210 (2%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYE 61
           ++  + PS  S+  LI+  C    V     +   M    + P   T +++++  C+ES  
Sbjct: 253 SRRGLRPSVVSFNTLISGYCRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKES-R 311

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
                 ++  +C   L PN  TF ++I    K    D A    + +K+  + P    YNA
Sbjct: 312 VEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNA 371

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAG 178
           ++ G  R  D++ A  +L EM     KPD  TF+ L+  C  + D+   ++  +++   G
Sbjct: 372 LINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEG 431

Query: 179 GQITKYVFMALINAYTTCGEFEKARQVVLD 208
            ++    F ALI+     G    A +++ D
Sbjct: 432 IELDDVAFTALISGLCRDGRVRDAERMLKD 461



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 137/355 (38%), Gaps = 57/355 (16%)

Query: 79  PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMV 138
           PN   F  ++    KI D  +A  + D++    L P+   +N +++GY R K+V+   ++
Sbjct: 224 PNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFVL 283

Query: 139 LKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGE 198
              ME   + PD  T+S LI+    E        +++ A G   +   M L+    T   
Sbjct: 284 KSVMESERISPDVFTYSALINGLCKE-------SRVEEANGLFDEMCEMGLVPNGVT--- 333

Query: 199 FEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
                                 + L+     HG+   A+  +E +K+ G   +     AL
Sbjct: 334 ---------------------FTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNAL 372

Query: 259 IEHLNSEGELNRLIQLLEEV----HDPD-----YWMDGCCRLILHCVRFKQLSSATDLLK 309
           I  L  +G+L    +LL E+      PD       MDGCC+               D   
Sbjct: 373 INGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCK-----------DGDMDSAL 421

Query: 310 QLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDEL--GLPPSRKCLDFL 367
           ++KD+  ++ + ++      F  + +    D ++  D  + +KD L  G  P       +
Sbjct: 422 EIKDRMVEEGIELD---DVAFTALISGLCRDGRV-RDAERMLKDMLSAGHKPDDPTYTMV 477

Query: 368 LGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           +       D+K    + KE +  G    V++Y  +   F   G  K+A  LL  M
Sbjct: 478 IDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQGQMKNAKMLLHAM 532



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 95/207 (45%), Gaps = 3/207 (1%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
            ++ + P+  ++  LI   C   K+ +AL   E M    + P   T N++++      + 
Sbjct: 323 CEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDL 382

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
              R++   +  +  KP+  TF +++    K  D DSA  + D + E  +      + A+
Sbjct: 383 KEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTAL 442

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGG 179
           ++G  R   V+ A  +LK+M  A  KPD  T++ +I     + D+    K  ++++  G 
Sbjct: 443 ISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGR 502

Query: 180 QITKYVFMALINAYTTCGEFEKARQVV 206
                 + AL+N +   G+ + A+ ++
Sbjct: 503 VPGVVTYNALMNGFCKQGQMKNAKMLL 529



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 111/248 (44%), Gaps = 10/248 (4%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P+    N ++H   +  +    R ++  I    L+P+  +F ++IS   + K+ +  + L
Sbjct: 224 PNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFVL 283

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163
              ++   + P    Y+A++ G  ++  V+ A  +  EM +  + P+  TF+ LI     
Sbjct: 284 KSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCK 343

Query: 164 EEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEI--PVKSRSE 218
              I   ++ +E +K  G +     + ALIN     G+ ++AR+ +L+  I    K    
Sbjct: 344 HGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARK-LLNEMIGNGFKPDKI 402

Query: 219 VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
             + L+      G    A+ + + + E G  L+  A  ALI  L  +G +    ++L+++
Sbjct: 403 TFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDM 462

Query: 279 ----HDPD 282
               H PD
Sbjct: 463 LSAGHKPD 470



 Score = 44.7 bits (104), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 83/186 (44%), Gaps = 6/186 (3%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVRR 67
           P   ++  L+   C    +  AL++ ++MV+  +        +++   C +    +  R 
Sbjct: 399 PDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERM 458

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +  M+   + KP+  T+  +I    K  D      LL +++    +P    YNA+M G+ 
Sbjct: 459 LKDMLSAGH-KPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFC 517

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLI-HNCSNEEDIIKYYEQLKSAGGQITKYV- 185
           ++  ++ A M+L  M    V P+  TF+ L+  +C +   +   ++      G ++ Y  
Sbjct: 518 KQGQMKNAKMLLHAMLNMEVVPNDITFNILLDGHCKHGSSVD--FKIFNGEKGLVSDYAS 575

Query: 186 FMALIN 191
           + AL+N
Sbjct: 576 YTALVN 581


>gi|222630937|gb|EEE63069.1| hypothetical protein OsJ_17877 [Oryza sativa Japonica Group]
          Length = 702

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 82/426 (19%), Positives = 172/426 (40%), Gaps = 18/426 (4%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  L+           AL V+++M      P   T N +      +  F    + 
Sbjct: 193 PCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKC 252

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    L PN+ T+ ++++    +   D A +L D +K+   +P  + YN I     +
Sbjct: 253 LDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGK 312

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLKSAGGQITKYV 185
           K      L +L+EM ++   P+  T++ ++  C     E+ + +    +KS G ++++  
Sbjct: 313 KSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDT 372

Query: 186 FMALINAYTTCGE----FEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
           +  LI+AY  CG     F+   +++     P  +     +AL++ L+  G  S A  +  
Sbjct: 373 YNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLT---TYNALLNVLSRQGDWSTAQSIVS 429

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFK-- 299
           ++ + G     ++   L++     G    +  + +EV+    +        L    FK  
Sbjct: 430 KMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCR 489

Query: 300 QLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPP 359
           +L       +++K +    ++ +   F+ +    A           ++   IK   GL P
Sbjct: 490 RLEGVEKAFQEVKAQGYKPDLVI---FNSMLAMYAKNGL--YSKATEMFDSIKQS-GLSP 543

Query: 360 SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLL 419
                + L+     + +   A  I K+ +++ +  +V+SY  +   F   G  K A ++L
Sbjct: 544 DLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRIL 603

Query: 420 SKMPKD 425
           S+M  D
Sbjct: 604 SEMIAD 609



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 83/171 (48%), Gaps = 5/171 (2%)

Query: 40  GELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDS 99
           G + PS   + +++ A  +      V + +  +     KP+   F SM+++  K   +  
Sbjct: 469 GTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSK 528

Query: 100 AYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159
           A  + D +K+  L P    YN++M  Y +  +   A  +LK+++ + VKPD  +++ +I 
Sbjct: 529 ATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVI- 587

Query: 160 NCSNEEDIIKYYEQLKS---AGGQITKYV-FMALINAYTTCGEFEKARQVV 206
           N   ++ +IK  +++ S   A G     V +  L+  Y +   F +AR+VV
Sbjct: 588 NGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVV 638



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 100/234 (42%), Gaps = 23/234 (9%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICH-------HNLKPNSE 82
           AL +  ++ +  +VP+  T N +L        +  + R +P I           ++P+  
Sbjct: 108 ALQLFAELRRQGVVPTIVTYNVVLDV------YGRMGRSWPRIVALLEEMRAAGVEPDDF 161

Query: 83  TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM 142
           T  ++I+   +    D A +  +DLK    +P    YNA++  + +  +   AL VLKEM
Sbjct: 162 TASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEM 221

Query: 143 EQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEF 199
           E +  +PD+ T++ L    +     E+  K  + + S G     + +  ++ AY   G  
Sbjct: 222 EDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRV 281

Query: 200 EKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
           ++A     ++  +  +P        + +   L    R +  + + EE+  +GC 
Sbjct: 282 DEALALFDRMKKNGYVP---NVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCT 332



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 4/118 (3%)

Query: 97  FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR-KKDVQGALMVLKEMEQANVKPDSQTFS 155
           ++ A  L  +L+   ++PT   YN ++  Y R  +     + +L+EM  A V+PD  T S
Sbjct: 105 YERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTAS 164

Query: 156 YLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAE 210
            +I  C  +   +  + ++E LK+ G       + AL+  +   G + +A +V+ + E
Sbjct: 165 TVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEME 222



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/106 (23%), Positives = 48/106 (45%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++ P   SY  +I   C    +  A  ++ +M+   + P   T ++++        FN  
Sbjct: 575 QVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEA 634

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMN 111
           R +   + HHNLKP   T+R ++    K K +D A   L ++ + +
Sbjct: 635 REVVNYMIHHNLKPMELTYRRVVDSYCKAKRYDEAREFLSEISDTD 680



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/160 (20%), Positives = 71/160 (44%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P++ +Y  ++T   ++ +V  AL + ++M +   VP+  T N I     +   F  + 
Sbjct: 261 LLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAML 320

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +      PN  T+ +M+++  K    D    +L+ +K   +  +   YN +++ Y
Sbjct: 321 EMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAY 380

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED 166
            R      A  +  EM  +   P   T++ L++  S + D
Sbjct: 381 GRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGD 420


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 85/424 (20%), Positives = 176/424 (41%), Gaps = 14/424 (3%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +I P   ++  LI   C L  ++ A  V+ ++ +    P T TI +++     + +    
Sbjct: 94  QIQPDLFTFNILINCFCHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLCLNGKVREA 153

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
              +  +       +  ++ ++I+   K  +  +A  +L  +  + + P   MYN I+  
Sbjct: 154 LHFHDDVIAKGFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTIIDS 213

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQIT 182
             + K V  A  +  EM    + PD  T++ LI+ C      ++ +  + Q+     +  
Sbjct: 214 LCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPD 273

Query: 183 KYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
            Y F  L++     GE +KAR V+ +  +  V S     ++L+       + + A  V+ 
Sbjct: 274 VYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVFN 333

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFK 299
            +   G   + ++   +I  L     ++  + L +E+H      +      LI   +++ 
Sbjct: 334 TMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYG 393

Query: 300 QLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPP 359
           ++S A DL+ ++ ++ +  ++       +  C+    D       + L+  IKD+ G+ P
Sbjct: 394 RISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDK-----AITLITKIKDQ-GIQP 447

Query: 360 SRKCLDFLL-GACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKL 418
           +      L+ G C N R LK A  ++++    G   +V  Y  M       G    A  L
Sbjct: 448 NIYTYTILVDGLCKNGR-LKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSL 506

Query: 419 LSKM 422
           +SKM
Sbjct: 507 VSKM 510



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/291 (19%), Positives = 128/291 (43%), Gaps = 17/291 (5%)

Query: 6   EITPSSASYKKLITYSCDLL-KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
            I P   +Y  LI Y C ++ ++  A+ +  QM+   + P   T N ++    +  E   
Sbjct: 234 RIFPDVVTYTTLI-YGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKK 292

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
            R +  ++    +  N  T+ S++     +K  + A  + + +    + P    Y+ ++ 
Sbjct: 293 ARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMIN 352

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN------CSNEEDIIKYYEQLKSAG 178
           G  + K V  A+ + KEM   ++ P++ T++ LI         S+  D++    ++ + G
Sbjct: 353 GLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLV---NEMHNRG 409

Query: 179 GQITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAI 237
                  + +L++A     + +KA  ++    +  ++      + LV  L  +GR  DA 
Sbjct: 410 QPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQ 469

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC 288
            VY+++   G +L+ +    ++  L  EG  +  + L+ ++ D     +GC
Sbjct: 470 AVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMED-----NGC 515



 Score = 39.7 bits (91), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 69/158 (43%), Gaps = 1/158 (0%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           MH+K  + P++ +Y  LI       ++  A D+V +M          T +S+L A  +++
Sbjct: 370 MHSK-SMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNH 428

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           + +    +   I    ++PN  T+  ++    K      A ++  DL          MYN
Sbjct: 429 QVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYN 488

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            ++ G  ++     AL ++ +ME     PD+ T+  L+
Sbjct: 489 VMVNGLCKEGLFDEALSLVSKMEDNGCIPDAVTYETLV 526



 Score = 38.5 bits (88), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 34/167 (20%), Positives = 75/167 (44%), Gaps = 10/167 (5%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEE---- 58
           A+  +TP   SY  +I   C    V  A+++ ++M    + P+T T NS++    +    
Sbjct: 336 ARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRI 395

Query: 59  SYEFNLVRRIYPMICHHNLKP-NSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTAS 117
           S  ++LV  +     H+  +P +  T+ S++    K    D A +L+  +K+  + P   
Sbjct: 396 SDAWDLVNEM-----HNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIY 450

Query: 118 MYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE 164
            Y  ++ G  +   ++ A  V +++       D + ++ +++    E
Sbjct: 451 TYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKE 497


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 130/301 (43%), Gaps = 14/301 (4%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K    P + +Y  +I           AL V++ M+    VP+  T   ++++  ++    
Sbjct: 253 KCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLE 312

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               ++ ++     +PNS  + S+I    K      A SL D++ E    P    +  ++
Sbjct: 313 RAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMI 372

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKS--AGGQI 181
            G  +  + + A    +EM +   KP+  T++ +I   S    +   +  +K   A G  
Sbjct: 373 DGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCF 432

Query: 182 TKYV-FMALINAYTTCGEFEKARQVVLDAEIPVKSRS-EVKSALVSALASHGRTSDAI-I 238
              V ++ L++ +   G  ++A Q++ + +    S + ++ S+LV  L   G   + +  
Sbjct: 433 PDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDD 492

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELN---RLIQ-LLEEVHDPD-----YWMDGCC 289
           ++E+ K A  NL+P    ++I  L   G L+   R+ Q ++ E   PD       ++G C
Sbjct: 493 LFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLC 552

Query: 290 R 290
           R
Sbjct: 553 R 553



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/286 (19%), Positives = 128/286 (44%), Gaps = 19/286 (6%)

Query: 17  LITYSCDLLKVHVA-------LDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           + TY+C L+ + VA         + E+M++  + P+T + N ++ +   +   +     +
Sbjct: 119 VFTYNC-LMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCF 177

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPT-ASMYNAIMAGYFR 128
            ++     KP+  TF  ++    K    + A+ +  ++  M  +P   +++ A++    +
Sbjct: 178 EIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLK 237

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYV 185
            K V+ A  V  +ME+    PD+  ++ +I       + ++ +K  + + +     T+  
Sbjct: 238 AKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVT 297

Query: 186 FMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +  L+N+    G  E+A ++  + A    +  S + ++L+   A  GR  +A  +++E+ 
Sbjct: 298 YGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMV 357

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCR 290
           EAG   +      +I+ L   G   +  +  EE+      M G C+
Sbjct: 358 EAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEM------MRGGCK 397



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/306 (20%), Positives = 123/306 (40%), Gaps = 48/306 (15%)

Query: 17  LITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHN 76
           +I   C   ++  A  + ++MV     P   T N +++    S E N V R + ++  H+
Sbjct: 512 IIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRE-NRVERAFALL--HD 568

Query: 77  LK-----PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131
           L+     P++ T+  +     KI + D A  +L++            Y A+  G   +  
Sbjct: 569 LEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQ 628

Query: 132 VQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMA 188
           V  A+ + +EM +    PD+  +  +I+        ED  K+++++   G + T   + A
Sbjct: 629 VDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTA 688

Query: 189 LINAYTTCGEFEKA----------------------------RQVVLDAEIPV----KSR 216
           L+ A    G  ++A                            + + +DA + +     SR
Sbjct: 689 LVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISR 748

Query: 217 SEVKSALVSA-----LASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRL 271
             V +A+ SA     L   G+T  A  + +E+   G         A+++ L    E  +L
Sbjct: 749 GNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDESGKL 808

Query: 272 IQLLEE 277
           ++L++E
Sbjct: 809 LKLVQE 814



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 73/402 (18%), Positives = 155/402 (38%), Gaps = 20/402 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINS-ILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
           A +V  +M+    VP    +++ ++    ++      R ++  +      P++  + +MI
Sbjct: 208 AFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMI 267

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
               K      A  +LD++     +PT   Y  ++    +   ++ A  + + M  +  +
Sbjct: 268 DGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFR 327

Query: 149 PDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           P+S  ++ LIH  +     ++    ++++  AG +        +I+     G FE+A + 
Sbjct: 328 PNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKS 387

Query: 206 VLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
             +      K      + ++  L+  GR ++A  + + +   GC  +    I L++    
Sbjct: 388 FEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCK 447

Query: 265 EGELNRLIQLLEEVHDPDYWMDGCC---RLILHCVRFKQLSSATDLLKQLKDKFKDDEMA 321
            G L+   QLL+E       +D C     L L+    K L     +   L D F+  + A
Sbjct: 448 LGRLDEAAQLLDE-------LDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAA 500

Query: 322 MEYHFSEIFCQI--ATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARD--L 377
            E     + C I         +     + Q +  E G  P     + L+     +R+  +
Sbjct: 501 AENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSE-GCKPDATTYNILINGLCRSRENRV 559

Query: 378 KRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLL 419
           +RA  +  + E  G   + ++Y  +       G    A K+L
Sbjct: 560 ERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKML 601



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 4/133 (3%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMV-QGELVPSTETINSILHACEESYEFNLVRR 67
           P+ A+Y  L+   C    V  A    E M+ +GELV S    ++++H   ++ + +   +
Sbjct: 681 PTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALK 740

Query: 68  IYP-MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           ++  MI   N+ P + T  S+    V+    + A  LL ++      P A+ + AI+ G 
Sbjct: 741 LFEDMISRGNV-PTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDG- 798

Query: 127 FRKKDVQGALMVL 139
            RK D  G L+ L
Sbjct: 799 LRKSDESGKLLKL 811


>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 536

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/252 (21%), Positives = 110/252 (43%), Gaps = 5/252 (1%)

Query: 2   HAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYE 61
           H + +    + ++  LI   C + K   A++++  M     +P   T N+++    +S E
Sbjct: 197 HLRFQSCNDTKTFNILIRGLCGVGKAEKAVELLGGMSGFGCLPDIVTYNTLIKGFCKSNE 256

Query: 62  FNLVRRIYPMI-CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
                 ++  +       P+  T+ SMIS   K      A  LLDD+  + + PT   +N
Sbjct: 257 LKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFN 316

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSA 177
            ++ GY +  ++  A  +  +M      PD  TF+ LI        +    + +E++ + 
Sbjct: 317 VLVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNAR 376

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDA 236
           G     + +  LINA        KAR+++   A   +  +  + + ++      G+ ++A
Sbjct: 377 GMFPNAFTYSILINALCKENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEA 436

Query: 237 IIVYEEIKEAGC 248
           I++ EE+++  C
Sbjct: 437 IVIVEEMEKKKC 448



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 105/231 (45%), Gaps = 6/231 (2%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L I P++ ++  L+       ++H A ++  +M+     P   T  S++       + N
Sbjct: 305 RLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVN 364

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              R++  +    + PN+ T+  +I+   K      A  LL  L   +++P   MYN ++
Sbjct: 365 QGFRLWEEMNARGMFPNAFTYSILINALCKENRLLKARELLGQLASKDIIPQPFMYNPVI 424

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYL-IHNCSNEE--DIIKYYEQLKSAGGQ 180
            G+ +   V  A+++++EME+   KPD  TF+ L I +C      + +  + ++ + G  
Sbjct: 425 DGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCS 484

Query: 181 ITKYVFMALINAYTTCGEFEKA---RQVVLDAEIPVKSRSEVKSALVSALA 228
             K    +L++     G  ++A    Q+    +I   +  E K+A V+  A
Sbjct: 485 PDKITVSSLLSCLLKAGMAKEAYHLNQIAHKGQINDGAPLETKTANVTLAA 535


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 107/229 (46%), Gaps = 18/229 (7%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+ +   M  G  +P+  TI  +L AC    +  L  +I+ ++       +     S++S
Sbjct: 98  AIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLS 157

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           L VK  +FD A  + DD+ + N++     + AI+ GY      + A+   K++ +  +KP
Sbjct: 158 LYVKCDNFDDALKVFDDIPDKNVVS----WTAIITGYISSGHFREAIGAFKKLLEMGLKP 213

Query: 150 DSQTFSYL------IHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203
           DS +   +      + +C++ E I +Y   +  +G     +V  +L++ Y  CG  E+A 
Sbjct: 214 DSFSLVKVLAACARLGDCTSGEWIDRY---ISDSGMGRNVFVATSLLDMYVKCGNLERAN 270

Query: 204 QVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP 252
            +   + +P K      S ++   A +G    A+ ++ +++    NL+P
Sbjct: 271 LIF--SAMPEKDIVS-WSTMIQGYAFNGLPQQALDLFFQMQSE--NLKP 314



 Score = 45.4 bits (106), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 51/270 (18%), Positives = 109/270 (40%), Gaps = 10/270 (3%)

Query: 12  ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPM 71
            S+  +IT          A+   +++++  L P + ++  +L AC    +      I   
Sbjct: 181 VSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRY 240

Query: 72  ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131
           I    +  N     S++ + VK  + + A  +   + E +++  ++M    + GY     
Sbjct: 241 ISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTM----IQGYAFNGL 296

Query: 132 VQGALMVLKEMEQANVKPDSQTFSYLIHNCS--NEEDIIKYYEQLKSAGGQITKYVF-MA 188
            Q AL +  +M+  N+KPD  T   ++  C+     D+  +   L      ++  V   A
Sbjct: 297 PQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTA 356

Query: 189 LINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC 248
           LI+ Y+ CG   +A ++    +   K    V +A++  L+ +G       ++  +++ G 
Sbjct: 357 LIDMYSKCGSVTQAWEIFTAMK---KKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGI 413

Query: 249 NLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
             +    I L+      G +N   Q    +
Sbjct: 414 RPDENTFIGLLCGCTHGGFVNEGRQFFNNM 443



 Score = 43.5 bits (101), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 49/229 (21%), Positives = 94/229 (41%), Gaps = 18/229 (7%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           ALD+  QM    L P   T+  +L AC      +L      ++  +    N     ++I 
Sbjct: 300 ALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALID 359

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K      A+ +   +K+ + +    ++NA+M G       +    +   +E+  ++P
Sbjct: 360 MYSKCGSVTQAWEIFTAMKKKDRV----VWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRP 415

Query: 150 DSQTFSYLIHNCSNEEDI---IKYYEQLK---SAGGQITKYVFMALINAYTTCGEFEKAR 203
           D  TF  L+  C++   +    +++  +K   S    I  Y  M  ++     G   +A 
Sbjct: 416 DENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCM--VDLLGRAGLLNEAH 473

Query: 204 QVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP 252
           Q++    +P+K  + V  AL+     H  T  A  V +++ E    LEP
Sbjct: 474 QLI--NNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIE----LEP 516


>gi|255547341|ref|XP_002514728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546332|gb|EEF47834.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 92/209 (44%), Gaps = 9/209 (4%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
            K  I P+   Y  LI   C   K+  A  +  QM    + P+  T N ++    ++   
Sbjct: 213 VKKGIEPTVVIYTTLIHGLCSESKLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTANV 272

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
                +Y  +    L+PN  TF  +I    K+++  +A      + +  ++P   ++N++
Sbjct: 273 KQALHLYQGMLDDGLQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGVVPNVVVFNSL 332

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC------SNEEDIIKYYEQLKS 176
           + GY +  +   A  +L EME+  + PD  T+S LI N          +DI+K  E+   
Sbjct: 333 IDGYSKAGNCSEATDLLLEMEKFKISPDVFTYSILIKNACRLGTVEEADDILKRMEK--- 389

Query: 177 AGGQITKYVFMALINAYTTCGEFEKARQV 205
            G      V+ +LI+ Y   G  EKA ++
Sbjct: 390 EGVPANSVVYNSLIDGYCKEGNMEKALEI 418



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 74/171 (43%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  L+   C    V  AL + + M+   L P+  T   ++ A  +  E    R
Sbjct: 252 VFPNLYTYNVLMDGYCKTANVKQALHLYQGMLDDGLQPNVVTFGILIDALCKVRELLAAR 311

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R +  +    + PN   F S+I    K  +   A  LL ++++  + P    Y+ ++   
Sbjct: 312 RFFVQMAKFGVVPNVVVFNSLIDGYSKAGNCSEATDLLLEMEKFKISPDVFTYSILIKNA 371

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA 177
            R   V+ A  +LK ME+  V  +S  ++ LI     E ++ K  E  K+ 
Sbjct: 372 CRLGTVEEADDILKRMEKEGVPANSVVYNSLIDGYCKEGNMEKALEIFKAT 422



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/251 (20%), Positives = 105/251 (41%), Gaps = 28/251 (11%)

Query: 79  PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMV 138
           P  +   ++++  +K   FD  + L +++    L PT   YN ++    R+ DV  A  +
Sbjct: 149 PAVQACNALLNGLLKKSSFDIMWELYNNMVSRRLFPTVVTYNVLVDACCRQGDVLRAKSL 208

Query: 139 LKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTT 195
           + EM +  ++P    ++ LIH   +E  +++    + Q+K +G     Y +  L++ Y  
Sbjct: 209 ISEMVKKGIEPTVVIYTTLIHGLCSESKLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCK 268

Query: 196 CGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE--------IKEAG 247
               ++A  +          +  +   L   + + G   DA+    E        ++ A 
Sbjct: 269 TANVKQALHLY---------QGMLDDGLQPNVVTFGILIDALCKVRELLAARRFFVQMAK 319

Query: 248 CNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVH----DPDYWMDGCCRLILHCVRFKQL 301
             + P  V+  +LI+  +  G  +    LL E+      PD +      LI +  R   +
Sbjct: 320 FGVVPNVVVFNSLIDGYSKAGNCSEATDLLLEMEKFKISPDVFTYSI--LIKNACRLGTV 377

Query: 302 SSATDLLKQLK 312
             A D+LK+++
Sbjct: 378 EEADDILKRME 388


>gi|357481229|ref|XP_003610900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512235|gb|AES93858.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1508

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/287 (21%), Positives = 128/287 (44%), Gaps = 12/287 (4%)

Query: 9   PSSASYKKLITY---SCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           P   S+  LI     SC  +   +A+++++++ +  L P   T N+++ AC         
Sbjct: 297 PDIVSFNTLINAKVKSCATVS-GLAIELLDEVGKFGLRPDIITYNTLISACSRESNLKEA 355

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             ++  +  +  +P+  T+ +MIS+  +      A  L + LK     P A  YN+++  
Sbjct: 356 IGVFSHMESNRCQPDLWTYNAMISVYGRCGFALKAEHLFEKLKSNGFSPDAVTYNSLLYA 415

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQIT 182
           + ++ + +    + +EM +     D  T++ +IH        ++ ++ Y  +KS+G    
Sbjct: 416 FSKEGNTEKVRDISEEMVKMGFGKDEMTYNTIIHMYGKHGRHDEALRLYRDMKSSGRNPD 475

Query: 183 KYVFMALINAYTTCGEFEKARQV---VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
              +  LI+      + E+A +V   +LDA   VK      SAL+ A A  GR  +A   
Sbjct: 476 AVTYTVLIDLLGKASKIEEASKVMSEMLDA--GVKPTLHTYSALICAYAKVGRRVEAEET 533

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
           +  ++E+G   +  A   +++      E+ +   L +E+ +  +  D
Sbjct: 534 FNRMRESGIKADHLAYSVMLDFFLRFNEIKKAAALYQEMIEAGFTPD 580



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 116/280 (41%), Gaps = 22/280 (7%)

Query: 9    PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
            P+   Y+ +I   C   +V     ++ +M +    P  +  NS+L       EF  +  I
Sbjct: 927  PTMHLYRLMIGLLCRFKRVRDVRVMLSEMGEAGFKPDLQIFNSVLKLYSSIEEFQNMGVI 986

Query: 69   YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
            Y MI    L P+ ET+ ++I++  +    +   SL+  +K + L P    Y +++A + +
Sbjct: 987  YQMIQDAGLAPDEETYNTLITMYCRDHRPEEGLSLMHKMKSLGLEPKRDTYRSMIAAFSK 1046

Query: 129  KKDVQGALMVLKEMEQANVKPDSQTFSYLI----HNCSNEEDIIKYYEQLKSAGGQITKY 184
            ++    A  + +E+     K D ++F +L+        + +      E +K AG +    
Sbjct: 1047 QQLYDQAEELFEELRSNGYKLD-RSFYHLMMKMYRTSGDHQKAENLLEIMKEAGIEPNTA 1105

Query: 185  VFMALINAYTTCGEFEKARQV---------VLDAEIPVKSRSEVKSALVSALASHGRTSD 235
                L+ +Y   G+ E+A ++         VLD  +P        S+++ A    G    
Sbjct: 1106 TMHLLMVSYGKSGQPEEADRILKNLRTMGAVLDT-LPY-------SSVIDAYLKKGDAKA 1157

Query: 236  AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLL 275
             I    E+KEA    + R     I   +  GE+N    LL
Sbjct: 1158 GIEKLTEMKEAAIEPDHRIWTCFIRAASLSGEVNDANNLL 1197



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 93/442 (21%), Positives = 183/442 (41%), Gaps = 70/442 (15%)

Query: 17   LITYSCDLLKVHVALDVVEQMVQGEL--VPSTETINSILHACEESYEFNLVRRIYPMICH 74
            LI   C   K+  AL+  E   +G L    S     S++H C +S +F++  +++  +  
Sbjct: 688  LIIILCKAGKLDAALE--EYRSRGGLGTFRSCTMYESLIHECTKSEQFDIASQLFSDMRF 745

Query: 75   HNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQG 134
            + ++P+   ++SM+S+  +I   ++A  LL   ++ +++      + I        D+  
Sbjct: 746  NGVEPSECLYQSMVSVYCRIGFPETAQHLLYHAEKNDIILDNVTVHII--------DIIE 797

Query: 135  ALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYT 194
                LK  + A                   E I+   E L+    ++ + V+ ALI+AY 
Sbjct: 798  TYGKLKMWQSA-------------------ESIV---ENLRQRCSKMDRKVWNALIHAYA 835

Query: 195  TCGEFEKARQV--VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP 252
              G +E+AR +   +  E P  +   V + L+ AL   GR S+  +V +E+++    +  
Sbjct: 836  FSGCYERARAIFNTMMREGPSPTVESV-NGLLQALIVDGRLSELYVVIQELQDMDLKISK 894

Query: 253  RAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD-GCCRLILHCV-RFKQLSSATDLLKQ 310
             +++ ++E     G L  + ++   +    Y+      RL++  + RFK++     +L +
Sbjct: 895  SSILLMLEAFAQAGNLFEVQKVYNGMKAAGYFPTMHLYRLMIGLLCRFKRVRDVRVMLSE 954

Query: 311  LKDK-FKDD------------------EMAMEYHF---------SEIFCQIATTDPPD-- 340
            + +  FK D                   M + Y            E +  + T    D  
Sbjct: 955  MGEAGFKPDLQIFNSVLKLYSSIEEFQNMGVIYQMIQDAGLAPDEETYNTLITMYCRDHR 1014

Query: 341  VQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYL 400
             + GL L+  +K  LGL P R     ++ A    +   +A  +++E  + G   +   Y 
Sbjct: 1015 PEEGLSLMHKMKS-LGLEPKRDTYRSMIAAFSKQQLYDQAEELFEELRSNGYKLDRSFYH 1073

Query: 401  WMYKAFLASGNRKSASKLLSKM 422
             M K +  SG+ + A  LL  M
Sbjct: 1074 LMMKMYRTSGDHQKAENLLEIM 1095



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 56/278 (20%), Positives = 113/278 (40%), Gaps = 41/278 (14%)

Query: 7    ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
            + P   +Y  LIT  C   +    L ++ +M                             
Sbjct: 995  LAPDEETYNTLITMYCRDHRPEEGLSLMHKMKS--------------------------- 1027

Query: 67   RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
                      L+P  +T+RSMI+   K + +D A  L ++L+        S Y+ +M  Y
Sbjct: 1028 --------LGLEPKRDTYRSMIAAFSKQQLYDQAEELFEELRSNGYKLDRSFYHLMMKMY 1079

Query: 127  FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITK 183
                D Q A  +L+ M++A ++P++ T   L+         E+  +  + L++ G  +  
Sbjct: 1080 RTSGDHQKAENLLEIMKEAGIEPNTATMHLLMVSYGKSGQPEEADRILKNLRTMGAVLDT 1139

Query: 184  YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
              + ++I+AY   G+ +   + + +  E  ++    + +  + A +  G  +DA  +   
Sbjct: 1140 LPYSSVIDAYLKKGDAKAGIEKLTEMKEAAIEPDHRIWTCFIRAASLSGEVNDANNLLNA 1199

Query: 243  IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
            ++  G +L  R +    E L S  E+++ +  LE V D
Sbjct: 1200 LQAVGFDLPIRLLGEKSESLVS--EVDQCLGRLEHVED 1235


>gi|15225031|ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42570711|ref|NP_973429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g06000
 gi|4006835|gb|AAC95177.1| hypothetical protein [Arabidopsis thaliana]
 gi|110736272|dbj|BAF00106.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250896|gb|AEC05990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330250897|gb|AEC05991.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 536

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 112/252 (44%), Gaps = 5/252 (1%)

Query: 2   HAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYE 61
           H + +    + ++  LI   C + K   AL+++  M      P   T N+++    +S E
Sbjct: 197 HLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNE 256

Query: 62  FNLVRRIYPMICHHNL-KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
            N    ++  +   ++  P+  T+ SMIS   K      A SLLDD+  + + PT   +N
Sbjct: 257 LNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFN 316

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSA 177
            ++ GY +  ++  A  +  +M      PD  TF+ LI        +    + +E++ + 
Sbjct: 317 VLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNAR 376

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDA 236
           G     + +  LINA        KAR+++   A   +  +  + + ++      G+ ++A
Sbjct: 377 GMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEA 436

Query: 237 IIVYEEIKEAGC 248
            ++ EE+++  C
Sbjct: 437 NVIVEEMEKKKC 448



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 72/155 (46%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L I P++ ++  L+       ++  A ++  +M+     P   T  S++       + +
Sbjct: 305 RLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVS 364

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              R++  +    + PN+ T+  +I+          A  LL  L   +++P   MYN ++
Sbjct: 365 QGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVI 424

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            G+ +   V  A ++++EME+   KPD  TF+ LI
Sbjct: 425 DGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILI 459


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 107/229 (46%), Gaps = 18/229 (7%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+ +   M  G  +P+  TI  +L AC    +  L  +I+ ++       +     S++S
Sbjct: 98  AIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLS 157

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           L VK  +FD A  + DD+ + N++     + AI+ GY      + A+   K++ +  +KP
Sbjct: 158 LYVKCDNFDDALKVFDDIPDKNVVS----WTAIITGYISSGHFREAIGAFKKLLEMGLKP 213

Query: 150 DSQTFSYL------IHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203
           DS +   +      + +C++ E I +Y   +  +G     +V  +L++ Y  CG  E+A 
Sbjct: 214 DSFSLVKVLAACARLGDCTSGEWIDRY---ISDSGMGRNVFVATSLLDMYVKCGNLERAN 270

Query: 204 QVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP 252
            +   + +P K      S ++   A +G    A+ ++ +++    NL+P
Sbjct: 271 LIF--SAMPEKDIVS-WSTMIQGYAFNGLPQQALDLFFQMQSE--NLKP 314



 Score = 45.1 bits (105), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 52/270 (19%), Positives = 110/270 (40%), Gaps = 10/270 (3%)

Query: 12  ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPM 71
            S+  +IT          A+   +++++  L P + ++  +L AC    +      I   
Sbjct: 181 VSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRY 240

Query: 72  ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131
           I    +  N     S++ + VK  + + A  +   + E +++  ++M    + GY     
Sbjct: 241 ISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTM----IQGYAFNGL 296

Query: 132 VQGALMVLKEMEQANVKPDSQTFSYLIHNCS--NEEDIIKYYEQLKSAGGQITKYVF-MA 188
            Q AL +  +M+  N+KPD  T   ++  C+     D+  +   L      ++  V   A
Sbjct: 297 PQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTA 356

Query: 189 LINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC 248
           LI+ Y+ CG   +A ++     +  K R  V +A++  L+ +G       ++  +++ G 
Sbjct: 357 LIDMYSKCGSVTQAWEIF--TAMKRKDRV-VWNAMMVGLSMNGHAKAVFSLFSLVEKHGI 413

Query: 249 NLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
             +    I L+      G +N   Q    +
Sbjct: 414 RPDENTFIGLLCGCTHGGFVNEGRQFFNNM 443



 Score = 43.1 bits (100), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 49/229 (21%), Positives = 93/229 (40%), Gaps = 18/229 (7%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           ALD+  QM    L P   T+  +L AC      +L      ++  +    N     ++I 
Sbjct: 300 ALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALID 359

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K      A+ +   +K  + +    ++NA+M G       +    +   +E+  ++P
Sbjct: 360 MYSKCGSVTQAWEIFTAMKRKDRV----VWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRP 415

Query: 150 DSQTFSYLIHNCSNEEDI---IKYYEQLK---SAGGQITKYVFMALINAYTTCGEFEKAR 203
           D  TF  L+  C++   +    +++  +K   S    I  Y  M  ++     G   +A 
Sbjct: 416 DENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCM--VDLLGRAGLLNEAH 473

Query: 204 QVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP 252
           Q++    +P+K  + V  AL+     H  T  A  V +++ E    LEP
Sbjct: 474 QLI--NNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIE----LEP 516


>gi|302759663|ref|XP_002963254.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
 gi|300168522|gb|EFJ35125.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
          Length = 495

 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 98/210 (46%), Gaps = 7/210 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQG----ELVPSTETINSILHACEESYEF 62
           + PS  +Y  L+   C   ++  A+ ++E+M++G    ++VP   + N+++    ++ + 
Sbjct: 172 VVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQL 231

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
              R +   +      PN  TF +++         D A ++ + + E N  PTA  Y  +
Sbjct: 232 PTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVL 291

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGG 179
           + G+ R   +  A     +M +  V+P+  T++ LI    + +  ED ++  +++ S G 
Sbjct: 292 ITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGR 351

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDA 209
           +     +  +I A    G+ E+A ++  DA
Sbjct: 352 EPNVVTYTRVIGALCKGGQIERATKLFNDA 381



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/153 (20%), Positives = 69/153 (45%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++ P   SY  +I+  C   ++  A  V+ +M++    P+  T N++L     + + +  
Sbjct: 210 DVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEA 269

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             ++  +   N +P + T+  +I+ + +    D A     D+    + P    Y A++ G
Sbjct: 270 NAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGG 329

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
                 V+ AL +LK M     +P+  T++ +I
Sbjct: 330 LCDANKVEDALEILKRMSSTGREPNVVTYTRVI 362



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 62/317 (19%), Positives = 127/317 (40%), Gaps = 48/317 (15%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHAC-------EE 58
           E  P+  +Y  ++   CD  K   AL++++ M    L P+T  +N +L +C       + 
Sbjct: 67  ECLPNIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVN-MLVSCLCKNGKVDA 125

Query: 59  SYEF--------NLVRRIYPMICHHNLK--------------------PNSETFRSMISL 90
           +YE         +L R  Y M+ +   K                    P+  T+  ++  
Sbjct: 126 AYELYKRLSDECSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYG 185

Query: 91  NVKIKDFDSAYSLLDDL----KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
             +    + A +LL+++    K  +++P    YN +++G+ + + +  A  VL+ M ++ 
Sbjct: 186 YCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSG 245

Query: 147 VKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203
             P+  TF+ L+         ++    +E +     + T   +  LI  +      +KA 
Sbjct: 246 CSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKAN 305

Query: 204 QVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIE 260
              +D     V+      +AL+  L    +  DA+ + + +   G   EP  V    +I 
Sbjct: 306 DYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTG--REPNVVTYTRVIG 363

Query: 261 HLNSEGELNRLIQLLEE 277
            L   G++ R  +L  +
Sbjct: 364 ALCKGGQIERATKLFND 380


>gi|302785562|ref|XP_002974552.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
 gi|300157447|gb|EFJ24072.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
          Length = 495

 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 98/210 (46%), Gaps = 7/210 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQG----ELVPSTETINSILHACEESYEF 62
           + PS  +Y  L+   C   ++  A+ ++E+M++G    ++VP   + N+++    ++ + 
Sbjct: 172 VVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQL 231

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
              R +   +      PN  TF +++         D A ++ + + E N  PTA  Y  +
Sbjct: 232 PTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVL 291

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGG 179
           + G+ R   +  A     +M +  V+P+  T++ LI    + +  ED ++  +++ S G 
Sbjct: 292 ITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGR 351

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDA 209
           +     +  +I A    G+ E+A ++  DA
Sbjct: 352 EPNVVTYTRVIGALCKGGQIERATKLFNDA 381



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/153 (20%), Positives = 69/153 (45%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++ P   SY  +I+  C   ++  A  V+ +M++    P+  T N++L     + + +  
Sbjct: 210 DVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEA 269

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             ++  +   N +P + T+  +I+ + +    D A     D+    + P    Y A++ G
Sbjct: 270 NAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGG 329

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
                 V+ AL +LK M     +P+  T++ +I
Sbjct: 330 LCDANKVEDALEILKRMSSTGREPNVVTYTRVI 362



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 62/317 (19%), Positives = 127/317 (40%), Gaps = 48/317 (15%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHAC-------EE 58
           E  P+  +Y  ++   CD  K   AL++++ M    L P+T  +N +L +C       + 
Sbjct: 67  ECLPNIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVN-MLVSCLCKNGKVDA 125

Query: 59  SYEF--------NLVRRIYPMICHHNLK--------------------PNSETFRSMISL 90
           +YE         +L R  Y M+ +   K                    P+  T+  ++  
Sbjct: 126 AYELYKRLSDECSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYG 185

Query: 91  NVKIKDFDSAYSLLDDL----KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
             +    + A +LL+++    K  +++P    YN +++G+ + + +  A  VL+ M ++ 
Sbjct: 186 YCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSG 245

Query: 147 VKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203
             P+  TF+ L+         ++    +E +     + T   +  LI  +      +KA 
Sbjct: 246 CSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKAN 305

Query: 204 QVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIE 260
              +D     V+      +AL+  L    +  DA+ + + +   G   EP  V    +I 
Sbjct: 306 DYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTG--REPNVVTYTRVIG 363

Query: 261 HLNSEGELNRLIQLLEE 277
            L   G++ R  +L  +
Sbjct: 364 ALCKGGQIERATKLFND 380


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 116/249 (46%), Gaps = 18/249 (7%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +IT   +  +   AL++ ++M++  + P   T+ S++ AC +S    L R+++  +
Sbjct: 163 SWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWV 222

Query: 73  ----CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
                 H    + +   ++I L  K  D ++A+ L + L   +++     +N ++ GY  
Sbjct: 223 DDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVS----WNTLIGGYTH 278

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI-----IKYYEQLKSAGGQITK 183
               + AL++ +EM ++   P+  T   ++  C++   I     I  Y   K  G     
Sbjct: 279 TNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNET 338

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
            +  +LI+ Y  CG+ E A QV     +  +S S   +A++   A HGR + A  ++  +
Sbjct: 339 SLRTSLIDMYAKCGDIEAAHQVF--NSMLYRSLSSW-NAMIFGFAMHGRANAAFDLFSRM 395

Query: 244 KEAGCNLEP 252
           +  G  +EP
Sbjct: 396 R--GNRVEP 402



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 17/167 (10%)

Query: 87  MISLNVKIKDFDS---AYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME 143
           ++ L V    FD    A S+ + ++E NL+    ++N ++ G+    D   AL +   M 
Sbjct: 1   LLELCVVSPHFDGLPYAISVFETIQEPNLL----IWNTMLRGHASSSDPVSALEMYVRMV 56

Query: 144 QANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFE 200
                P+S +F +L+ +C+     E+  + + Q+   G  + +YV  +LI+ Y   G  E
Sbjct: 57  SLGHLPNSYSFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLE 116

Query: 201 KARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEIKE 245
            AR+ V DA     S  +V S  AL++  AS G    A  V++EI E
Sbjct: 117 DARK-VFDA----SSHRDVVSCTALITGYASRGDFRSARKVFDEITE 158



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 92/212 (43%), Gaps = 44/212 (20%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI----------CHHNLKP 79
           AL++  +MV    +P++ +   +L +C +S  F   R+I+  +           H +L  
Sbjct: 48  ALEMYVRMVSLGHLPNSYSFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLIS 107

Query: 80  ---------------NSETFRSMISLNVKIK------DFDSAYSLLDDLKEMNLMPTASM 118
                          ++ + R ++S    I       DF SA  + D++ E +++     
Sbjct: 108 MYARNGGLEDARKVFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVS---- 163

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA- 177
           +NA++ GY      + AL + KEM + NV+PD  T   ++  C+ +   I+   Q+ S  
Sbjct: 164 WNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACA-QSGSIELGRQVHSWV 222

Query: 178 -------GGQITKYVFMALINAYTTCGEFEKA 202
                  G   +  +  ALI+ Y+ CG+ E A
Sbjct: 223 DDDDDDHGFSSSLKIVNALIDLYSKCGDVETA 254



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 94/211 (44%), Gaps = 18/211 (8%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLK--PNSETFR-S 86
           AL + ++M++    P+  T+ S+L AC      ++ R I+  I    LK   N  + R S
Sbjct: 285 ALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYI-DKKLKGVTNETSLRTS 343

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           +I +  K  D ++A+ + + +    L  + S +NA++ G+        A  +   M    
Sbjct: 344 LIDMYAKCGDIEAAHQVFNSM----LYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNR 399

Query: 147 VKPDSQTFSYLIHNCSNE------EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFE 200
           V+PD  TF  L+  CS+         I K   Q  +   ++  Y  M  I+     G F+
Sbjct: 400 VEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCM--IDLLGHSGLFK 457

Query: 201 KARQVVLDAEIPVKSRSEVKSALVSALASHG 231
           +A +++    +P++    +  +L+ A   HG
Sbjct: 458 EAEEMI--HTMPMEPDGVIWCSLLKACKKHG 486


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 71/351 (20%), Positives = 151/351 (43%), Gaps = 12/351 (3%)

Query: 77  LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGAL 136
           +KP++  +   +SL VK        +L   +    + P  S +N ++    +   ++ A+
Sbjct: 160 VKPDTRFYNVALSLLVKANKLKLVETLHSKMVADAVPPDVSTFNILIRALCKAHQLRPAI 219

Query: 137 MVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAY 193
           ++L++M    ++PD +TF+ L+     E D+   ++  E +  +G ++T      L+N  
Sbjct: 220 LMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGL 279

Query: 194 TTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPR 253
              G  E+A + + + E     +    +ALV+ L   G     + + + + E G  L+  
Sbjct: 280 CKEGRIEEALRFIYEEEGFCPDQVTF-NALVNGLCRTGHIKQGLEMMDFMLEKGFELDVY 338

Query: 254 AVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQLSSATDLLKQL 311
              +LI  L   GE++  +++L  +   D   +      LI    +   + +AT+L + L
Sbjct: 339 TYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVL 398

Query: 312 KDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGAC 371
             K    ++       +  C  +     + +I ++L + +K++ G  P       L+ + 
Sbjct: 399 TSKGVLPDVCTFNSLIQGLCLTS-----NREIAMELFEEMKEK-GCDPDEFTYSILIESL 452

Query: 372 VNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
            + R LK A ++ KE E +G   NV+ Y  +      +     A  +  +M
Sbjct: 453 CSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQM 503



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 93/456 (20%), Positives = 162/456 (35%), Gaps = 92/456 (20%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P T   N  L    ++ +  LV  ++  +    + P+  TF  +I    K      A  +
Sbjct: 162 PDTRFYNVALSLLVKANKLKLVETLHSKMVADAVPPDVSTFNILIRALCKAHQLRPAILM 221

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM--------------------- 142
           L+D+    L P    +  +M G+  + DV+GAL + + M                     
Sbjct: 222 LEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLCK 281

Query: 143 ------------EQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK---SAGGQITKYVFM 187
                       E+    PD  TF+ L++       I +  E +      G ++  Y + 
Sbjct: 282 EGRIEEALRFIYEEEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYN 341

Query: 188 ALINAYTTCGEFEKARQVV-----------------LDAEIPVKSRSEVKSALVSALASH 230
           +LI+     GE ++A +++                 L   +  ++  E  + L   L S 
Sbjct: 342 SLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSK 401

Query: 231 GRTSD-------------------AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRL 271
           G   D                   A+ ++EE+KE GC+ +      LIE L SE  L   
Sbjct: 402 GVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEA 461

Query: 272 IQLLEEVHDPDYWMDGCCR-------LILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEY 324
           + LL+E+      + GC R       LI    +  ++  A D+  Q++            
Sbjct: 462 LMLLKEME-----LSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYN 516

Query: 325 HFSEIFCQIATTDPPDVQIGLDLL-QFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLI 383
                 C+        V+    L+ Q I +  GL P +     +L       D+KRA  I
Sbjct: 517 TLINGLCK-----SKRVEEAAQLMDQMIME--GLKPDKFTYTTMLKYFCQQGDIKRAADI 569

Query: 384 WKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLL 419
            +     G   ++++Y  +      +G    ASKLL
Sbjct: 570 VQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLL 605



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 119/273 (43%), Gaps = 8/273 (2%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVRRIYPM 71
           +Y  LI+  C L ++  A++++  MV  +  P+T T N+++   C+E++       +  +
Sbjct: 339 TYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENH-VEAATELARV 397

Query: 72  ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131
           +    + P+  TF S+I       + + A  L +++KE    P    Y+ ++     ++ 
Sbjct: 398 LTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERR 457

Query: 132 VQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE--DIIKYYEQLKSAGGQITKYVFMA 188
           ++ ALM+LKEME +    +   ++ LI   C N    D    ++Q++  G   +   +  
Sbjct: 458 LKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNT 517

Query: 189 LINAYTTCGEFEKARQVVLDAEI--PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA 246
           LIN        E+A Q ++D  I   +K      + ++      G    A  + + +   
Sbjct: 518 LINGLCKSKRVEEAAQ-LMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLN 576

Query: 247 GCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279
           GC  +      LI  L   G ++   +LL  V 
Sbjct: 577 GCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQ 609



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/314 (18%), Positives = 136/314 (43%), Gaps = 10/314 (3%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   ++  L+   C    +   L++++ M++        T NS++    +  E +    I
Sbjct: 300 PDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEI 359

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +   + +PN+ T+ ++I    K    ++A  L   L    ++P    +N+++ G   
Sbjct: 360 LHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCL 419

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYV 185
             + + A+ + +EM++    PD  T+S LI +  +E   ++ +   ++++ +G      V
Sbjct: 420 TSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVV 479

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIK 244
           +  LI+          A  +    E+   SRS V  + L++ L    R  +A  + +++ 
Sbjct: 480 YNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMI 539

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDYWMDGCCRLILHCVRFKQ 300
             G   +      ++++   +G++ R   +++ +     +PD    G   LI    +  +
Sbjct: 540 MEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGT--LIGGLCKAGR 597

Query: 301 LSSATDLLKQLKDK 314
           +  A+ LL+ ++ K
Sbjct: 598 VDVASKLLRSVQMK 611



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 69/159 (43%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           L ++ SS +Y  LI   C   +V  A  +++QM+   L P   T  ++L    +  +   
Sbjct: 506 LGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKR 565

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
              I   +  +  +P+  T+ ++I    K    D A  LL  ++   ++ T   YN ++ 
Sbjct: 566 AADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQ 625

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163
              ++K  + A+ + +EM +    PD  T+  +     N
Sbjct: 626 ALCKRKRTKEAMRLFREMMEKGDPPDVITYKIVFRGLCN 664


>gi|168038876|ref|XP_001771925.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676707|gb|EDQ63186.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 831

 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 99/472 (20%), Positives = 172/472 (36%), Gaps = 73/472 (15%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P+  SY  LI        +  A+  VE+M    + P+  T + I+       +     
Sbjct: 223 IEPNVHSYTNLIHAYAVAQDLRGAIACVEEMEAEGVSPNAATYSVIISGYGRLGDVEAAE 282

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R +      N   N   + ++I    K  + + A +++  ++E  L  T  +YN +M GY
Sbjct: 283 RWFQRALSENWHHNDVIYNNIIHAYCKAGNMERAEAIMTAMEEQGLEATLGLYNMLMDGY 342

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVF 186
              + V   L V + +     K  ++T                        G   T   +
Sbjct: 343 VHCRAVDKCLNVFRRL-----KARTET------------------------GLSPTVVSY 373

Query: 187 MALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
             LIN Y+  G+ +KA Q+  + E   +K   +  S ++      G T++A  V+E++  
Sbjct: 374 GCLINLYSKLGKMDKALQISNEMEDQGIKHNRKTYSMIIDGYVQLGDTANAFSVFEDMSN 433

Query: 246 AGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPD--------------YWMDGCCRL 291
           AG   +      L+      G++NR ++LL  +   D              +   G  R+
Sbjct: 434 AGIKPDGITYNILMNAFCKNGQMNRALELLARMESGDCPPTLRTYTIIIDGFMKIGDLRM 493

Query: 292 ILHCVRFKQL-----SSAT--DLLKQLKDKFKDDEMAM-------------EYHFSEIFC 331
               VR  ++     S+AT   ++  L    + D  A              E  ++ +  
Sbjct: 494 AFETVRDMKMAGFRPSAATYNVIMHGLAQAGQMDRAASIIDEMVVAGVHPNERSYTTLIE 553

Query: 332 QIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAG 391
             A     D+ +       IK E+GL P       LL AC  A  ++    I  E   AG
Sbjct: 554 GYACIG--DMGLAFKYFNRIK-EVGLKPDVIAYASLLKACCKAGRMQSTLAITAEMAAAG 610

Query: 392 LPYNVLSYLWMYKAFLASGNRKSASKLLSKM------PKDDPHVRFVIQACK 437
           +P N   Y  +   +   G+   AS ++ KM      P    +  F+   CK
Sbjct: 611 VPMNNYIYNILLDGWAQRGDMWEASDIMQKMRHEGLTPDIHSYTSFINACCK 662



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/243 (20%), Positives = 104/243 (42%), Gaps = 4/243 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  +I     +  + +A + V  M      PS  T N I+H   ++ + +    I
Sbjct: 473 PTLRTYTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSAATYNVIMHGLAQAGQMDRAASI 532

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    + PN  ++ ++I     I D   A+   + +KE+ L P    Y +++    +
Sbjct: 533 IDEMVVAGVHPNERSYTTLIEGYACIGDMGLAFKYFNRIKEVGLKPDVIAYASLLKACCK 592

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYV 185
              +Q  L +  EM  A V  ++  ++ L+   +   D+ +     ++++  G     + 
Sbjct: 593 AGRMQSTLAITAEMAAAGVPMNNYIYNILLDGWAQRGDMWEASDIMQKMRHEGLTPDIHS 652

Query: 186 FMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           + + INA    G+  KA + +    +  V+   +  + L+   AS      A+I Y+E+K
Sbjct: 653 YTSFINACCKAGDMLKATETIEQMKQQGVQPNLQAYTTLIHGWASASYPEKALICYDEMK 712

Query: 245 EAG 247
            AG
Sbjct: 713 SAG 715



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/270 (20%), Positives = 115/270 (42%), Gaps = 4/270 (1%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  +I     L     A  V E M    + P   T N +++A  ++ + N    +   +
Sbjct: 407 TYSMIIDGYVQLGDTANAFSVFEDMSNAGIKPDGITYNILMNAFCKNGQMNRALELLARM 466

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
              +  P   T+  +I   +KI D   A+  + D+K     P+A+ YN IM G  +   +
Sbjct: 467 ESGDCPPTLRTYTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSAATYNVIMHGLAQAGQM 526

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMAL 189
             A  ++ EM  A V P+ ++++ LI   +   D+    KY+ ++K  G +     + +L
Sbjct: 527 DRAASIIDEMVVAGVHPNERSYTTLIEGYACIGDMGLAFKYFNRIKEVGLKPDVIAYASL 586

Query: 190 INAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC 248
           + A    G  +    +  + A   V   + + + L+   A  G   +A  + ++++  G 
Sbjct: 587 LKACCKAGRMQSTLAITAEMAAAGVPMNNYIYNILLDGWAQRGDMWEASDIMQKMRHEGL 646

Query: 249 NLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
             +  +  + I      G++ +  + +E++
Sbjct: 647 TPDIHSYTSFINACCKAGDMLKATETIEQM 676



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/346 (19%), Positives = 145/346 (41%), Gaps = 17/346 (4%)

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
            N+ RR+        L P   ++  +I+L  K+   D A  + +++++  +      Y+ 
Sbjct: 352 LNVFRRLKART-ETGLSPTVVSYGCLINLYSKLGKMDKALQISNEMEDQGIKHNRKTYSM 410

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE--DIIKYYEQLKSAG 178
           I+ GY +  D   A  V ++M  A +KPD  T++ L++  C N +    ++   +++S  
Sbjct: 411 IIDGYVQLGDTANAFSVFEDMSNAGIKPDGITYNILMNAFCKNGQMNRALELLARMESGD 470

Query: 179 GQITKYVFMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAI 237
              T   +  +I+ +   G+   A + V D ++   +  +   + ++  LA  G+   A 
Sbjct: 471 CPPTLRTYTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSAATYNVIMHGLAQAGQMDRAA 530

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYWMDGCCRLIL 293
            + +E+  AG +   R+   LIE     G++    +    + +    PD  +     L+ 
Sbjct: 531 SIIDEMVVAGVHPNERSYTTLIEGYACIGDMGLAFKYFNRIKEVGLKPD--VIAYASLLK 588

Query: 294 HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKD 353
            C +  ++ S   +  ++        + M  +   I          D+    D++Q ++ 
Sbjct: 589 ACCKAGRMQSTLAITAEMAAA----GVPMNNYIYNILLD-GWAQRGDMWEASDIMQKMRH 643

Query: 354 ELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSY 399
           E GL P        + AC  A D+ +A    ++ +  G+  N+ +Y
Sbjct: 644 E-GLTPDIHSYTSFINACCKAGDMLKATETIEQMKQQGVQPNLQAY 688



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/389 (17%), Positives = 153/389 (39%), Gaps = 50/389 (12%)

Query: 78  KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALM 137
           KP       +++   K  D  SA +  + ++   + P    Y  ++  Y   +D++GA+ 
Sbjct: 189 KPKQRDHTLLVNYYGKRGDKHSARAAFESMRAAGIEPNVHSYTNLIHAYAVAQDLRGAIA 248

Query: 138 VLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYT 194
            ++EME   V P++ T+S +I       D+    +++++  S        ++  +I+AY 
Sbjct: 249 CVEEMEAEGVSPNAATYSVIISGYGRLGDVEAAERWFQRALSENWHHNDVIYNNIIHAYC 308

Query: 195 TCGEFEKARQVV-------LDAEIP------------------------VKSRSEVK--- 220
             G  E+A  ++       L+A +                         +K+R+E     
Sbjct: 309 KAGNMERAEAIMTAMEEQGLEATLGLYNMLMDGYVHCRAVDKCLNVFRRLKARTETGLSP 368

Query: 221 -----SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLL 275
                  L++  +  G+   A+ +  E+++ G     +    +I+     G+      + 
Sbjct: 369 TVVSYGCLINLYSKLGKMDKALQISNEMEDQGIKHNRKTYSMIIDGYVQLGDTANAFSVF 428

Query: 276 EEVHDPDYWMDGCCRLILHCVRFK--QLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQI 333
           E++ +     DG    IL     K  Q++ A +LL +++       +       + F +I
Sbjct: 429 EDMSNAGIKPDGITYNILMNAFCKNGQMNRALELLARMESGDCPPTLRTYTIIIDGFMKI 488

Query: 334 ATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLP 393
                 D+++  + ++ +K   G  PS    + ++     A  + RA  I  E   AG+ 
Sbjct: 489 G-----DLRMAFETVRDMK-MAGFRPSAATYNVIMHGLAQAGQMDRAASIIDEMVVAGVH 542

Query: 394 YNVLSYLWMYKAFLASGNRKSASKLLSKM 422
            N  SY  + + +   G+   A K  +++
Sbjct: 543 PNERSYTTLIEGYACIGDMGLAFKYFNRI 571



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/147 (19%), Positives = 59/147 (40%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           ++ + P   +Y  L+   C   ++   L +  +M    +  +    N +L    +  +  
Sbjct: 573 EVGLKPDVIAYASLLKACCKAGRMQSTLAITAEMAAAGVPMNNYIYNILLDGWAQRGDMW 632

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               I   + H  L P+  ++ S I+   K  D   A   ++ +K+  + P    Y  ++
Sbjct: 633 EASDIMQKMRHEGLTPDIHSYTSFINACCKAGDMLKATETIEQMKQQGVQPNLQAYTTLI 692

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPD 150
            G+      + AL+   EM+ A + PD
Sbjct: 693 HGWASASYPEKALICYDEMKSAGMIPD 719


>gi|242075962|ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
 gi|241939100|gb|EES12245.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
          Length = 550

 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/274 (20%), Positives = 123/274 (44%), Gaps = 6/274 (2%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQ-GELVPSTETINSILHACEESYEFNLVR 66
           +P + ++  L+   C   +V+   D++ ++ + G  +P+  T  S++    ++       
Sbjct: 250 SPDTITHNILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAL 309

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +Y  +     +PN+ T+  +I+   K  D +SA  +   L      P    +++++ GY
Sbjct: 310 SVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRRCPPDVVTFSSLIDGY 369

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE---DIIKYYEQLK-SAGGQIT 182
            R   +  A+ + KEM Q +++P+  TFS +IH+   +    + + +  +L   A     
Sbjct: 370 CRCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQNRSAEALGFLRELNMRADIAPQ 429

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
            +++  +I+     G+ E+A  +V D  E          + L+      GR  +AI ++ 
Sbjct: 430 TFIYNPVIDILCKGGQVEEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAITLFH 489

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLL 275
           ++ E GC  +   V + I  +   G  N + Q++
Sbjct: 490 KMVETGCRPDKITVNSFISCVLKAGMPNEVDQIM 523



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 59/287 (20%), Positives = 110/287 (38%), Gaps = 50/287 (17%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMV-QGELVPSTETINSILHACEESYEFN 63
           L + PS  SY  +IT  C   +   AL + +QM  Q   +P     + +  +C  +   +
Sbjct: 105 LSVPPSEQSYSHVITLLCRSGRHRDALKLFDQMTDQSGYLPDAVFFSFVAGSCTNAGLLD 164

Query: 64  LV-----------RRIYPMICHHNL--------------------------KPNSETFRS 86
                        RRI P   ++NL                           P+  +F  
Sbjct: 165 AAVTLLTKASQFGRRIEPY-AYNNLLNLLIARGRAQDAVALFESWIQDGLYSPDGWSFNV 223

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           +I    ++ +F  A  L++ + E    P    +N ++ G  R K V     +L+ +++  
Sbjct: 224 VIKGVCRVGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRDG 283

Query: 147 V-KPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
           V  P+  T++ +I         ED +  Y  +  +G +     +  LIN Y    + E A
Sbjct: 284 VCMPNVVTYTSVISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALDMESA 343

Query: 203 ----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
               RQ++L    P        S+L+      G+  DA+ +++E+ +
Sbjct: 344 VRMYRQLILRRCPP---DVVTFSSLIDGYCRCGQLDDAMRIWKEMGQ 387


>gi|224057531|ref|XP_002299253.1| predicted protein [Populus trichocarpa]
 gi|222846511|gb|EEE84058.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/257 (21%), Positives = 119/257 (46%), Gaps = 19/257 (7%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS 86
           +  A  V ++M + ++V  T  I+   +  +      L  R+        L+PN  T+ +
Sbjct: 177 IGYARTVFDRMAKRDIVSWTSMISGYCNVGKIEEALVLFERMKL----EGLEPNDFTWNA 232

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           +IS   +  D D A+SLL  +    L+P    +NA++AG+ + +    A  + ++M    
Sbjct: 233 LISGYARRGDSDGAFSLLSKMTREGLVPDLVTWNAMIAGFVQGERAGDAFKLFQDMLVLG 292

Query: 147 VKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK--------YVFMALINAYTTCGE 198
           VKP+  T + L+  C     ++   ++ ++  G + +        ++  ALI+ Y+ CG 
Sbjct: 293 VKPNLVTVAGLLPACG----MVSSIQRGRAIHGLVYRLEFDISNAFIASALIDMYSECGS 348

Query: 199 FEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
           F++AR V    +I  K+ +   +A++     HG  + +I ++E +   G       ++ +
Sbjct: 349 FKEARTVF--EKIHNKNVASW-NAMIGCYGKHGMVNTSIQLFERMHGEGIQANDVTLLCV 405

Query: 259 IEHLNSEGELNRLIQLL 275
           +   +  G + + +++ 
Sbjct: 406 LSACSHSGYVEKGLEIF 422


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 84/437 (19%), Positives = 186/437 (42%), Gaps = 30/437 (6%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEF 62
           ++ I P   SY  +I   C   ++  A+D++ +M      P++ T   ++   C+E    
Sbjct: 3   RINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVE 62

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
             +R +  M     L+ +   + ++IS        D   +L D++ E  + P   +Y+ +
Sbjct: 63  EAMRLLGEMK-RKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCL 121

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGG 179
           + G+ +K   + A  VL  M +  ++PD  T++ +I     +      +  ++ +   G 
Sbjct: 122 INGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGE 181

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAI 237
           + +   +  LIN     G    A + + +  +    R EV S   L+  L ++G+  +A+
Sbjct: 182 EPSTVTYNVLINGLCKEGCIGDAFK-IFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAM 240

Query: 238 IVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMD--GCCRLIL 293
            ++  + E G  +EP  +    +I+ L  EG L++ +++ + + +   + +   C  LI 
Sbjct: 241 KLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIG 300

Query: 294 HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKD 353
             ++   +  A +L K++                + FC+            + +L F K 
Sbjct: 301 EYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCK------------MHMLNFAKG 348

Query: 354 EL------GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFL 407
                   GL P+    + L+ +      L++A  +++E + +    + +S+  M    L
Sbjct: 349 LFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTL 408

Query: 408 ASGNRKSASKLLSKMPK 424
            +G+  SA +LL+ M +
Sbjct: 409 KAGDIHSAKELLNDMQQ 425



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 93/197 (47%), Gaps = 9/197 (4%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEF 62
           KL + PSS +Y  +I   C +  ++ A  +  +M    L P+    N+++ + C+ES   
Sbjct: 320 KLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKES-SL 378

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
              RR++  +   N +P++ +F  MI   +K  D  SA  LL+D+++M L P A  Y++ 
Sbjct: 379 EQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSF 438

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS-NE--EDIIKYYEQLKSAGG 179
           +    +   ++ A      M  + + PD+  +  LI     N+  E++I    Q+   G 
Sbjct: 439 INRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVINLLRQMADMGV 498

Query: 180 ----QITKYVFMALINA 192
               +IT  +   L N+
Sbjct: 499 ILDLEITNSILTFLCNS 515



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 84/182 (46%), Gaps = 12/182 (6%)

Query: 42  LVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAY 101
           LVPS+ T + ++    + +  N  + ++  +    L P    + ++++   K    + A 
Sbjct: 323 LVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQAR 382

Query: 102 SLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC 161
            L  ++KE N  P    +N ++ G  +  D+  A  +L +M+Q  + PD+ T+S  I+  
Sbjct: 383 RLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRL 442

Query: 162 S---NEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA----RQ-----VVLDA 209
           S     E+    ++ + ++G     +V+ +LI  +    E E+     RQ     V+LD 
Sbjct: 443 SKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVINLLRQMADMGVILDL 502

Query: 210 EI 211
           EI
Sbjct: 503 EI 504



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 82/174 (47%), Gaps = 4/174 (2%)

Query: 107 LKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE-- 164
           +K +N++P    YN I+ G  ++K ++ A+ +L EME ++ +P+S T+  L+     E  
Sbjct: 1   MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGR 60

Query: 165 -EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSA 222
            E+ ++   ++K  G ++   V+  LI+ + + G  ++ + +  +  E  +     V S 
Sbjct: 61  VEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSC 120

Query: 223 LVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276
           L++     G   +A  V   + E G   +      +I  L  +G   + + L +
Sbjct: 121 LINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFD 174



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/281 (17%), Positives = 122/281 (43%), Gaps = 6/281 (2%)

Query: 12  ASYKKLITYSCDLLKVHVALDVVEQMVQ-GELV-PSTETINSILHACEESYEFNLVRRIY 69
            SY  LI   C+  K+  A+ +   +++ G  V P   T N+++    +    +    IY
Sbjct: 221 VSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIY 280

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
             +       N  T   +I   +K    D A  L   + ++ L+P+++ Y+ ++ G+ + 
Sbjct: 281 DTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKM 340

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVF 186
             +  A  +   M+ + + P    ++ L+ +   E   E   + ++++K +  +     F
Sbjct: 341 HMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISF 400

Query: 187 MALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
             +I+     G+   A++++ D  ++ +   +   S+ ++ L+  G+  +A   ++ +  
Sbjct: 401 NIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIA 460

Query: 246 AGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
           +G   +     +LI+      E+  +I LL ++ D    +D
Sbjct: 461 SGITPDNHVYDSLIKGFGLNDEIEEVINLLRQMADMGVILD 501


>gi|449443903|ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
 gi|449475521|ref|XP_004154479.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
          Length = 660

 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 96/479 (20%), Positives = 193/479 (40%), Gaps = 72/479 (15%)

Query: 26  KVHVALDVVEQMV--QGELVPSTETINSILH------ACEESYEFNLVRRIYPMICHHNL 77
           +V  A++V+++M+  + E  P+ +T   + +        E   + + +  +      HN+
Sbjct: 54  RVDNAMNVLDEMLLPESEFRPNDKTAGIVFNNLLKIDGLEGRVKEDEIAGLVSKFGKHNI 113

Query: 78  KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALM 137
            P++     +IS   +  + + A+++LD+L  +N +  A+  NA++ G  + ++     +
Sbjct: 114 FPDTIALTQLISKLCRSGNTNLAWNILDNLMMLNGLKDAAPCNALLTGLGKAREFGKMNL 173

Query: 138 VLKEMEQANVKPDSQTFSYLI-HNCSNE--EDIIKYYEQLKSAGGQITKYV--------- 185
           ++++M+  N++P   TF  LI H C     +D ++ +E++K    +   +V         
Sbjct: 174 LMRKMKDMNIQPTVITFGILINHLCKFRRIDDALEVFEKMKGEKEETKVFVAPDTIMYNT 233

Query: 186 --------------------------------FMALINAYTTCGEFEKARQVVLDAE-IP 212
                                           F  LIN Y   GE E A ++  + E   
Sbjct: 234 LIDGLCKVGRQEEALCLMGKMRSDQCAPTTATFNCLINGYCRSGEIEVAHKLFNEMENAQ 293

Query: 213 VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLI 272
           ++      + LV  +  H R S A+  +  +++ G           I    +   +N+ +
Sbjct: 294 IEPNVITLNTLVDGMCKHNRISTAVEFFRVMQQKGLKGNNVTYTVFINAFCNVNNMNKAM 353

Query: 273 QLLEEVHDPDYWMDGCCRLILHC--VRFKQLSSATDLLKQLKD-KFKDDEMAMEYHFSEI 329
           + L+E+     + D      L C   +  +L  A+ ++ +LK+  F  D +      SE 
Sbjct: 354 EFLDEMSKDGCFPDAVVYYTLICGLAQAGRLDDASSVVSKLKEAGFCLDRVCYNVLISE- 412

Query: 330 FCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEY-E 388
           FC+    D    Q  L+ ++      G+ P     + L+       + K AH   K+  E
Sbjct: 413 FCKKNKLDR--AQEWLNEMELA----GVKPDSVTYNTLISYFSKIGNFKLAHKFMKKMTE 466

Query: 389 NAGLPYNVLSYLWMYKAFLASGNRKSASKLL-------SKMPKDDPHVRFVIQA-CKQT 439
             GL   V +Y  +  A+  + N   A K+        SK+P +      +I + CKQT
Sbjct: 467 EEGLSPTVFTYGALIHAYCLNNNIDEAIKIFKEMNNVASKVPPNTVIYNILIDSLCKQT 525



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 62/319 (19%), Positives = 130/319 (40%), Gaps = 42/319 (13%)

Query: 2   HAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYE 61
             K+ + P +  Y  LI   C + +   AL ++ +M   +  P+T T N +++    S E
Sbjct: 219 ETKVFVAPDTIMYNTLIDGLCKVGRQEEALCLMGKMRSDQCAPTTATFNCLINGYCRSGE 278

Query: 62  FNLVRRIY---------PMI----------CHHN----------------LKPNSETFRS 86
             +  +++         P +          C HN                LK N+ T+  
Sbjct: 279 IEVAHKLFNEMENAQIEPNVITLNTLVDGMCKHNRISTAVEFFRVMQQKGLKGNNVTYTV 338

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
            I+    + + + A   LD++ +    P A +Y  ++ G  +   +  A  V+ ++++A 
Sbjct: 339 FINAFCNVNNMNKAMEFLDEMSKDGCFPDAVVYYTLICGLAQAGRLDDASSVVSKLKEAG 398

Query: 147 VKPDSQTFSYLIHNCSNEEDIIKYYEQLKS---AGGQITKYVFMALINAYTTCGEFEKAR 203
              D   ++ LI     +  + +  E L     AG +     +  LI+ ++  G F+ A 
Sbjct: 399 FCLDRVCYNVLISEFCKKNKLDRAQEWLNEMELAGVKPDSVTYNTLISYFSKIGNFKLAH 458

Query: 204 QVV--LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALI 259
           + +  +  E  +        AL+ A   +    +AI +++E+      + P  VI   LI
Sbjct: 459 KFMKKMTEEEGLSPTVFTYGALIHAYCLNNNIDEAIKIFKEMNNVASKVPPNTVIYNILI 518

Query: 260 EHLNSEGELNRLIQLLEEV 278
           + L  + ++N  + LL+++
Sbjct: 519 DSLCKQTQVNFALSLLDDM 537



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 3/166 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGE-LVPSTETINSILHACEESYEFNLV 65
           + P S +Y  LI+Y   +    +A   +++M + E L P+  T  +++HA   +   +  
Sbjct: 434 VKPDSVTYNTLISYFSKIGNFKLAHKFMKKMTEEEGLSPTVFTYGALIHAYCLNNNIDEA 493

Query: 66  RRIYPMICH--HNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
            +I+  + +    + PN+  +  +I    K    + A SLLDD+K   +MP  + YN+I 
Sbjct: 494 IKIFKEMNNVASKVPPNTVIYNILIDSLCKQTQVNFALSLLDDMKFRGVMPNTTTYNSIF 553

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK 169
                K  +  A  ++  M +    PD  T   L    S   +I K
Sbjct: 554 KALRDKNWLDKAFKLMDRMVEQACNPDYITMEILTEWLSAVGEITK 599



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 63/343 (18%), Positives = 131/343 (38%), Gaps = 77/343 (22%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +  P++A++  LI   C   ++ VA  +  +M   ++ P+  T+N+++    +    +  
Sbjct: 258 QCAPTTATFNCLINGYCRSGEIEVAHKLFNEMENAQIEPNVITLNTLVDGMCKHNRISTA 317

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMY------ 119
              + ++    LK N+ T+   I+    + + + A   LD++ +    P A +Y      
Sbjct: 318 VEFFRVMQQKGLKGNNVTYTVFINAFCNVNNMNKAMEFLDEMSKDGCFPDAVVYYTLICG 377

Query: 120 -----------------------------NAIMAGYFRKKDVQGALMVLKEMEQANVKPD 150
                                        N +++ + +K  +  A   L EME A VKPD
Sbjct: 378 LAQAGRLDDASSVVSKLKEAGFCLDRVCYNVLISEFCKKNKLDRAQEWLNEMELAGVKPD 437

Query: 151 SQTFSYLIHNCS---NEEDIIKYYEQLKSAGG-QITKYVFMALINAYTTCGEFEKARQVV 206
           S T++ LI   S   N +   K+ +++    G   T + + ALI+AY      ++A ++ 
Sbjct: 438 SVTYNTLISYFSKIGNFKLAHKFMKKMTEEEGLSPTVFTYGALIHAYCLNNNIDEAIKIF 497

Query: 207 -----LDAEIP---------------------------------VKSRSEVKSALVSALA 228
                + +++P                                 V   +   +++  AL 
Sbjct: 498 KEMNNVASKVPPNTVIYNILIDSLCKQTQVNFALSLLDDMKFRGVMPNTTTYNSIFKALR 557

Query: 229 SHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRL 271
                  A  + + + E  CN +   +  L E L++ GE+ +L
Sbjct: 558 DKNWLDKAFKLMDRMVEQACNPDYITMEILTEWLSAVGEITKL 600


>gi|356544435|ref|XP_003540656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
           chloroplastic-like [Glycine max]
          Length = 1071

 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 100/209 (47%), Gaps = 9/209 (4%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMV--QGELVPSTETINSILHACEESYEFNL 64
           + P    +  LI        V  A DV+ +M      + P   TI ++L AC ++ +   
Sbjct: 540 VKPDRVVFNALIAACAQSGAVDRAFDVLAEMAAETQPIDPDHVTIGALLKACTKAGQVER 599

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM- 123
            + +Y M+  +N+K   E +   I+   +  D++ A ++ +D+ +  ++P     +A++ 
Sbjct: 600 AQEVYKMVQKYNIKGCPEVYTIAINSCSQTGDWEYARTVYNDMTQKGILPDEIFLSALID 659

Query: 124 -AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKYYEQLKSAGG 179
            AG+ +K D   A  VL+E  +  ++    ++S L+  CSN  +    ++ YE LKS   
Sbjct: 660 VAGHAKKLDA--AFDVLQEAHKGGIQIGIMSYSSLMGACSNARNWQKALELYEYLKSLKL 717

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLD 208
            IT     AL+ A     +F+KA +V+ +
Sbjct: 718 TITVSTVNALLTALCDGDQFQKALEVLFE 746



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/363 (20%), Positives = 144/363 (39%), Gaps = 16/363 (4%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P   T N ++  C  S +     ++  ++    L+P+ + + ++I    K    D  + +
Sbjct: 437 PMLSTFNMLMSVCASSQDSEGAFQVLQLLKDARLEPDCKLYTTLILTCAKSGKVDLMFEV 496

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163
              +    + P    Y A++ G  R   V  A      M   NVKPD   F+ LI  C+ 
Sbjct: 497 FHKMVNSGVEPNVHTYGALIGGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIAACAQ 556

Query: 164 EEDIIKYYEQLKSAGGQITK-----YVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRS 217
              + + ++ L     +            AL+ A T  G+ E+A++V  +  +  +K   
Sbjct: 557 SGAVDRAFDVLAEMAAETQPIDPDHVTIGALLKACTKAGQVERAQEVYKMVQKYNIKGCP 616

Query: 218 EVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEE 277
           EV +  +++ +  G    A  VY ++ + G   +   + ALI+      +L+    +L+E
Sbjct: 617 EVYTIAINSCSQTGDWEYARTVYNDMTQKGILPDEIFLSALIDVAGHAKKLDAAFDVLQE 676

Query: 278 VHDPDYWMD--GCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQI-A 334
            H     +       L+  C   +    A +L + LK       + +    S +   + A
Sbjct: 677 AHKGGIQIGIMSYSSLMGACSNARNWQKALELYEYLKS------LKLTITVSTVNALLTA 730

Query: 335 TTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPY 394
             D    Q  L++L F    LGL P+      L+ A     D++ A +I    +  G+  
Sbjct: 731 LCDGDQFQKALEVL-FEMKGLGLSPNSITFSILIVASEKKDDMEAAQMILSLAKKDGVAP 789

Query: 395 NVL 397
           N++
Sbjct: 790 NLI 792



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/144 (19%), Positives = 63/144 (43%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P       LI  +    K+  A DV+++  +G +     + +S++ AC  +  +    
Sbjct: 647 ILPDEIFLSALIDVAGHAKKLDAAFDVLQEAHKGGIQIGIMSYSSLMGACSNARNWQKAL 706

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +Y  +    L     T  ++++       F  A  +L ++K + L P +  ++ ++   
Sbjct: 707 ELYEYLKSLKLTITVSTVNALLTALCDGDQFQKALEVLFEMKGLGLSPNSITFSILIVAS 766

Query: 127 FRKKDVQGALMVLKEMEQANVKPD 150
            +K D++ A M+L   ++  V P+
Sbjct: 767 EKKDDMEAAQMILSLAKKDGVAPN 790


>gi|356520039|ref|XP_003528673.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g11690-like [Glycine max]
          Length = 585

 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 107/240 (44%), Gaps = 5/240 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P++ +Y  +I+  C+   V  AL+V  +M +  +     T N          +F    
Sbjct: 302 IVPNAYAYNCVISEYCNARMVDKALNVFAEMREKGIAYGVITYNX--GGLCRGKKFGEAV 359

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +I   +    L PN  T+  +I+    +   D+A  L + LK   L PT   YN ++AGY
Sbjct: 360 KIVHQVNKVGLSPNIVTYNILINGFCDVGKIDTAVRLFNQLKSNGLSPTLVTYNTLIAGY 419

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE--QLKSAGGQITKY 184
            + +++ GAL ++KEME+  + P   T+  LI   +      K  E   L    G ++  
Sbjct: 420 SKVENLAGALDLVKEMEERCIPPSKVTYXILIDAFARLNYTKKTCEMHSLMEKSGLVSDV 479

Query: 185 VFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
               LI+     G  ++A +++    E+ ++  S + + ++      G +  A+ ++ E+
Sbjct: 480 XHSVLIHGLCMNGNMKEASKLLKSLGELHLEPNSVIYNTMIHGYCKEGSSYRALRLFNEM 539



 Score = 39.7 bits (91), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 17/156 (10%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           ++P+  +Y  LI     +  +  ALD+V++M +  + PS  T   ++ A       N  +
Sbjct: 405 LSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIPPSKVTYXILIDAFAR---LNYTK 461

Query: 67  RIYPMICHHNLKPNSETFRSM--------ISLNVKIKDFDSAYSLLDDLKEMNLMPTASM 118
           +   M   H+L   S     +        + +N  +K+   A  LL  L E++L P + +
Sbjct: 462 KTCEM---HSLMEKSGLVSDVXHSVLIHGLCMNGNMKE---ASKLLKSLGELHLEPNSVI 515

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTF 154
           YN ++ GY ++     AL +  EM  + + P+  +F
Sbjct: 516 YNTMIHGYCKEGSSYRALRLFNEMVHSRMVPNVASF 551


>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
           chloroplastic [Vitis vinifera]
 gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
          Length = 893

 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 117/256 (45%), Gaps = 26/256 (10%)

Query: 29  VALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
           VALD+  QM     +P++ T +SIL AC    E    R +   +       +     ++I
Sbjct: 231 VALDLFCQMCCRFFMPNSFTFSSILTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAII 290

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASM--YNAIMAGYFRKKDVQGALMVLKEMEQAN 146
            L  K +D D A      +KE   MP  ++  +  I++G+ +K D   A    KEM +  
Sbjct: 291 DLYAKCRDMDQA------VKEFLRMPIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVG 344

Query: 147 VKPDSQTFSYLIHNCSNEEDIIKYYEQLKS----AGGQITKYVFMALINAYTTCGEFEKA 202
            K ++ T + ++  C+ E  +IK   QL S     G  +   V  ALIN Y+  G  + +
Sbjct: 345 EKINNYTITSVLTACT-EPVMIKEAVQLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLS 403

Query: 203 RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP-----RAVIA 257
            +V    E+       + + ++SA A  G T  A+ +++ + + G  L P      +V++
Sbjct: 404 ERVF--REMESTKNLAMWAVMISAFAQSGSTGRAVELFQRMLQEG--LRPDKFCSSSVLS 459

Query: 258 LIEHLNSEGELNRLIQ 273
           +I+ L+    L RLI 
Sbjct: 460 IIDSLS----LGRLIH 471



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 123/267 (46%), Gaps = 16/267 (5%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           ++E T + A +  +I+          A+++ ++M+Q  L P     +S+L   +     +
Sbjct: 409 EMESTKNLAMWAVMISAFAQSGSTGRAVELFQRMLQEGLRPDKFCSSSVLSIIDS---LS 465

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
           L R I+  I    L  +     S+ ++  K    + +Y++ + + + + +  ASM    +
Sbjct: 466 LGRLIHCYILKIGLFTDISVGSSLFTMYSKCGSLEESYTVFEQMPDKDNVSWASM----I 521

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA-GGQIT 182
            G+      + A+ + +EM    ++PD  T +  +  CS    + K  E    A   ++ 
Sbjct: 522 TGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTAALTACSALHSLEKGKEVHGYALRARVG 581

Query: 183 KYVFM--ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
           K V +  AL+N Y+ CG    AR+V     +P K +    S+LVS  A +G   DA++++
Sbjct: 582 KEVLVGGALVNMYSKCGAIVLARRVF--DMLPQKDQFSC-SSLVSGYAQNGYIEDALLLF 638

Query: 241 EEIKEAGCNLEP---RAVIALIEHLNS 264
            EI+ A   ++     +VI  +  LNS
Sbjct: 639 HEIRMADLWIDSFTVSSVIGAVAILNS 665



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/250 (19%), Positives = 104/250 (41%), Gaps = 18/250 (7%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P+  T  S+L AC           +Y +   +    N      MI L  K+  F+ A  +
Sbjct: 145 PNQFTYGSVLSACTALGSPLYGELVYSLALKNGFFSNGYVRAGMIDLFAKLCSFEDALRV 204

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163
             D+    L      +NAI++G  + ++   AL +  +M      P+S TFS ++  C+ 
Sbjct: 205 FQDV----LCENVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMPNSFTFSSILTACAA 260

Query: 164 EEDIIKYYEQLKSAGGQITK-------YVFMALINAYTTCGEFEKARQVVLDAEIPVKSR 216
            E++    E  +   G + K       +V  A+I+ Y  C + ++A +  L   +P+++ 
Sbjct: 261 LEEL----EFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFL--RMPIRNV 314

Query: 217 SEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276
               + ++S       +  A   ++E+++ G  +    + +++        +   +QL  
Sbjct: 315 VS-WTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHS 373

Query: 277 EVHDPDYWMD 286
            +    +++D
Sbjct: 374 WIFKTGFYLD 383



 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 48/259 (18%), Positives = 112/259 (43%), Gaps = 10/259 (3%)

Query: 11  SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYP 70
           + S+  +IT   +      A+ +  +M+  E+ P   T+ + L AC   +     + ++ 
Sbjct: 514 NVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTAALTACSALHSLEKGKEVHG 573

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
                 +        +++++  K      A  + D L + +    +S+    ++GY +  
Sbjct: 574 YALRARVGKEVLVGGALVNMYSKCGAIVLARRVFDMLPQKDQFSCSSL----VSGYAQNG 629

Query: 131 DVQGALMVLKEMEQANVKPDSQTFSYLIHNCS--NEEDI-IKYYEQLKSAGGQITKYVFM 187
            ++ AL++  E+  A++  DS T S +I   +  N  DI  + +  +   G      V  
Sbjct: 630 YIEDALLLFHEIRMADLWIDSFTVSSVIGAVAILNSLDIGTQLHACVTKMGLNAEVSVGS 689

Query: 188 ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           +L+  Y+ CG  ++  +V    E P        +A++ + A HG+ ++A+ VY+ +++ G
Sbjct: 690 SLVTMYSKCGSIDECHKVFEQIEKPDLIS---WTAMIVSYAQHGKGAEALKVYDLMRKEG 746

Query: 248 CNLEPRAVIALIEHLNSEG 266
              +    + ++   +  G
Sbjct: 747 TKPDSVTFVGVLSACSHNG 765



 Score = 42.4 bits (98), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 37/206 (17%), Positives = 90/206 (43%), Gaps = 10/206 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL +  ++   +L   + T++S++ A       ++  +++  +    L        S+++
Sbjct: 634 ALLLFHEIRMADLWIDSFTVSSVIGAVAILNSLDIGTQLHACVTKMGLNAEVSVGSSLVT 693

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K    D  + + + +++ +L+     + A++  Y +      AL V   M +   KP
Sbjct: 694 MYSKCGSIDECHKVFEQIEKPDLIS----WTAMIVSYAQHGKGAEALKVYDLMRKEGTKP 749

Query: 150 DSQTFSYLIHNCSNEEDIIKYYEQLKSA----GGQITKYVFMALINAYTTCGEFEKARQV 205
           DS TF  ++  CS+   + + Y  L S     G +   Y +  +++     G  ++A + 
Sbjct: 750 DSVTFVGVLSACSHNGMVEEGYSHLNSMAKEYGIEPGYYHYACMVDLLGRSGRLKEAERF 809

Query: 206 VLDAEIPVKSRSEVKSALVSALASHG 231
           +    +P++  + +   L++A   HG
Sbjct: 810 I--NNMPIEPDALLWGILLAACKVHG 833


>gi|125559009|gb|EAZ04545.1| hypothetical protein OsI_26694 [Oryza sativa Indica Group]
          Length = 784

 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/295 (19%), Positives = 131/295 (44%), Gaps = 25/295 (8%)

Query: 7   ITPSSASYKKLI-TYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           + P+  +Y  ++  YS   +     +++V  M +  + P   T N+++  C     +   
Sbjct: 203 VQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEA 262

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            +++  +     +P+  TF S++ +  K +  D A  ++ +++ +   P+   YN++++ 
Sbjct: 263 AQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISS 322

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQIT 182
           Y +   ++ A+ + +EME   +KPD  T++ LI        I   I  Y+++   G +  
Sbjct: 323 YVKDGLLEQAVALKQEMEVKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPN 382

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSA-----------LVSALASHG 231
              + ALI  +   G+F +   V            E++SA           L++    +G
Sbjct: 383 LCTYNALIKMHGVRGKFPEMMAVF----------DELRSAGFVPDIVTWNTLLAVFGQNG 432

Query: 232 RTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
             S+   V++E+K+AG   E    ++LI   +  G  +  +Q+ + + +   + D
Sbjct: 433 LDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPD 487



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 73/161 (45%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  LI       K    + V +++     VP   T N++L    ++   + V  +
Sbjct: 381 PNLCTYNALIKMHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGV 440

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +      P  +T+ S+IS   +   FD A  +   + E  + P  S YNA+++   R
Sbjct: 441 FKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALAR 500

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK 169
               + A  +  EME+ + KPD  ++S L+H  +N + + K
Sbjct: 501 GGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDK 541



 Score = 45.8 bits (107), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 29/145 (20%), Positives = 71/145 (48%), Gaps = 3/145 (2%)

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
           V +I  ++    +  ++ T+ S++ +  ++ D +   ++L ++K   + P    YN ++ 
Sbjct: 612 VEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIY 671

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQI 181
            Y RK  ++ A  +  EM+ + +KPD  T++  + +  SN   E+ I+    + + G + 
Sbjct: 672 AYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKP 731

Query: 182 TKYVFMALINAYTTCGEFEKARQVV 206
            +  + +++  Y   G+   A+  V
Sbjct: 732 NERTYNSIVEGYCRNGKLTDAKIFV 756



 Score = 42.0 bits (97), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 15/175 (8%)

Query: 114 PTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE----EDIIK 169
           P A  Y A+++ + R    + A+ V + M  + V+P   T++ ++H  S      +++++
Sbjct: 170 PDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVE 229

Query: 170 YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALAS 229
               +K  G    +Y +  LI+       +++A QV    E+        K    S L  
Sbjct: 230 LVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVF--DEMKASGFEPDKVTFNSLLDV 287

Query: 230 HG---RTSDAIIVYEEIKEAGCNLEPRAVI---ALIEHLNSEGELNRLIQLLEEV 278
           +G   R  +AI V +E++  GC   P +V+   +LI     +G L + + L +E+
Sbjct: 288 YGKARRHDEAIEVIQEMERVGC---PPSVVTYNSLISSYVKDGLLEQAVALKQEM 339



 Score = 41.6 bits (96), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 32/157 (20%), Positives = 76/157 (48%), Gaps = 4/157 (2%)

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           +M+S+  K +       +L  +KE  +  +A+ YN++M  Y R  D +    +L E++ +
Sbjct: 598 AMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSS 657

Query: 146 NVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
            V+PD  +++ +I+    +   ++  + + ++K +G +     +   + +Y +   FE+A
Sbjct: 658 GVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEA 717

Query: 203 RQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAII 238
            ++V        K      +++V     +G+ +DA I
Sbjct: 718 IELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAKI 754


>gi|357500061|ref|XP_003620319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495334|gb|AES76537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 496

 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 111/244 (45%), Gaps = 10/244 (4%)

Query: 18  ITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNL 77
           ++  C   KV  A +V   M++    P+  T +S++       E N  + I+  +    +
Sbjct: 226 VSTFCKEGKVKEAKNVFAAMMKKGFKPNVVTYSSLMDGYCLVKEVNKAKSIFNNMAQGGV 285

Query: 78  KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALM 137
            P+ +++  +I+   KIK  D+A +L +++    ++P    YN+++ G  +   +  AL 
Sbjct: 286 NPDIQSYNILINGFCKIKMTDAAMNLFEEMHCRKIIPNVVTYNSLIDGLCKSGKISYALK 345

Query: 138 VLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYVFMALINAYT 194
           ++ EM      PD  T+S L+   C N   +  I    +LK  G Q   Y +  LIN   
Sbjct: 346 LVDEMHDRGQPPDIITYSSLLDALCKNHPGDKAIALLTKLKDQGLQPNMYTYTILINGLC 405

Query: 195 TCGEFEKARQVVLDAEIPVKSRS---EVKSALVSALASHGRTSDAIIVYEEIKEAGCNLE 251
             G  E A+ +  D  + VK  +      + ++    ++G   +A+ +  +++E GC   
Sbjct: 406 KGGRPEDAQNIFED--LLVKGYNINVNTYTVMIHVFCNNGMFGEALAMLSKMEENGC--I 461

Query: 252 PRAV 255
           P AV
Sbjct: 462 PNAV 465



 Score = 45.1 bits (105), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 33/157 (21%), Positives = 70/157 (44%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           A+  + P   SY  LI   C +     A+++ E+M   +++P+  T NS++    +S + 
Sbjct: 281 AQGGVNPDIQSYNILINGFCKIKMTDAAMNLFEEMHCRKIIPNVVTYNSLIDGLCKSGKI 340

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           +   ++   +      P+  T+ S++    K    D A +LL  LK+  L P    Y  +
Sbjct: 341 SYALKLVDEMHDRGQPPDIITYSSLLDALCKNHPGDKAIALLTKLKDQGLQPNMYTYTIL 400

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159
           + G  +    + A  + +++       +  T++ +IH
Sbjct: 401 INGLCKGGRPEDAQNIFEDLLVKGYNINVNTYTVMIH 437



 Score = 38.9 bits (89), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 71/158 (44%), Gaps = 1/158 (0%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           MH + +I P+  +Y  LI   C   K+  AL +V++M      P   T +S+L A  +++
Sbjct: 315 MHCR-KIIPNVVTYNSLIDGLCKSGKISYALKLVDEMHDRGQPPDIITYSSLLDALCKNH 373

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
             +    +   +    L+PN  T+  +I+   K    + A ++ +DL         + Y 
Sbjct: 374 PGDKAIALLTKLKDQGLQPNMYTYTILINGLCKGGRPEDAQNIFEDLLVKGYNINVNTYT 433

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            ++  +        AL +L +ME+    P++ T+  +I
Sbjct: 434 VMIHVFCNNGMFGEALAMLSKMEENGCIPNAVTYEIII 471


>gi|168044100|ref|XP_001774520.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674075|gb|EDQ60588.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 350

 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 112/232 (48%), Gaps = 18/232 (7%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL++ + M    L P   +  SIL +C  S   +  ++++  I     + +     ++++
Sbjct: 122 ALEMFKDMKIAGLAPDVASFLSILKSCNGSVHLDDGKQLHKAIIESGFELSVRVQTALVN 181

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTA--SMYNAIMAGYFRKKDVQGALMVLKEMEQANV 147
           +  + +      SLLD  K  N +P     ++  ++AGY +    + A  + + M    +
Sbjct: 182 MYCRCE------SLLDARKMFNKLPRKDIGLWTTMIAGYAQTDHGEEAFALFQAMRDTGL 235

Query: 148 KPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204
           +P+  TF  L+  C+  E + K    +  ++ AG    + V  ALINAY+ C     AR+
Sbjct: 236 QPNKMTFLALLKACTRPEFLQKGKWLHNHIRCAGLDSDEKVGTALINAYSKCRSLVDARK 295

Query: 205 VVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255
           V  +    + +R+ +  +AL++A + + R  +A+ ++E++K  G  ++P  V
Sbjct: 296 VFDN----LCTRNVISWTALIAAYSRNDRAEEALDLFEQMKREG--VQPNEV 341



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/234 (18%), Positives = 106/234 (45%), Gaps = 10/234 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL    +M    + P+  T  S+L A     +    RR++  I    L+ +     ++  
Sbjct: 21  ALAFFFRMQDEHVRPNRVTFLSLLKAFRGPGDLESGRRVHNFILERQLESDVRVGTALTC 80

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  +      A+ +   ++  +++    ++NA++ GY +      AL + K+M+ A + P
Sbjct: 81  MYFRCGSALDAHRVFKRVQNRDII----VWNAMIEGYCQAGLRDKALEMFKDMKIAGLAP 136

Query: 150 DSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D  +F  ++ +C+     +D  + ++ +  +G +++  V  AL+N Y  C     AR++ 
Sbjct: 137 DVASFLSILKSCNGSVHLDDGKQLHKAIIESGFELSVRVQTALVNMYCRCESLLDARKMF 196

Query: 207 LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE 260
              ++P K    + + +++  A      +A  +++ +++ G        +AL++
Sbjct: 197 --NKLPRKDIG-LWTTMIAGYAQTDHGEEAFALFQAMRDTGLQPNKMTFLALLK 247


>gi|115462947|ref|NP_001055073.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|50878350|gb|AAT85125.1| unknown protein, contains pentatricopeptide (PPR) repeat, PF01535
           [Oryza sativa Japonica Group]
 gi|113578624|dbj|BAF16987.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|215695094|dbj|BAG90285.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 793

 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 82/426 (19%), Positives = 172/426 (40%), Gaps = 18/426 (4%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  L+           AL V+++M      P   T N +      +  F    + 
Sbjct: 284 PCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKC 343

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    L PN+ T+ ++++    +   D A +L D +K+   +P  + YN I     +
Sbjct: 344 LDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGK 403

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLKSAGGQITKYV 185
           K      L +L+EM ++   P+  T++ ++  C     E+ + +    +KS G ++++  
Sbjct: 404 KSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDT 463

Query: 186 FMALINAYTTCGE----FEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
           +  LI+AY  CG     F+   +++     P  +     +AL++ L+  G  S A  +  
Sbjct: 464 YNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLT---TYNALLNVLSRQGDWSTAQSIVS 520

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFK-- 299
           ++ + G     ++   L++     G    +  + +EV+    +        L    FK  
Sbjct: 521 KMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCR 580

Query: 300 QLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPP 359
           +L       +++K +    ++ +   F+ +    A           ++   IK   GL P
Sbjct: 581 RLEGVEKAFQEVKAQGYKPDLVI---FNSMLAMYAKNGL--YSKATEMFDSIKQS-GLSP 634

Query: 360 SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLL 419
                + L+     + +   A  I K+ +++ +  +V+SY  +   F   G  K A ++L
Sbjct: 635 DLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRIL 694

Query: 420 SKMPKD 425
           S+M  D
Sbjct: 695 SEMIAD 700



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 83/171 (48%), Gaps = 5/171 (2%)

Query: 40  GELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDS 99
           G + PS   + +++ A  +      V + +  +     KP+   F SM+++  K   +  
Sbjct: 560 GTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSK 619

Query: 100 AYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159
           A  + D +K+  L P    YN++M  Y +  +   A  +LK+++ + VKPD  +++ +I 
Sbjct: 620 ATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVI- 678

Query: 160 NCSNEEDIIKYYEQLKS---AGGQITKYV-FMALINAYTTCGEFEKARQVV 206
           N   ++ +IK  +++ S   A G     V +  L+  Y +   F +AR+VV
Sbjct: 679 NGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVV 729



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 100/234 (42%), Gaps = 23/234 (9%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICH-------HNLKPNSE 82
           AL +  ++ +  +VP+  T N +L        +  + R +P I           ++P+  
Sbjct: 199 ALQLFAELRRQGVVPTIVTYNVVLDV------YGRMGRSWPRIVALLEEMRAAGVEPDDF 252

Query: 83  TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM 142
           T  ++I+   +    D A +  +DLK    +P    YNA++  + +  +   AL VLKEM
Sbjct: 253 TASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEM 312

Query: 143 EQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEF 199
           E +  +PD+ T++ L    +     E+  K  + + S G     + +  ++ AY   G  
Sbjct: 313 EDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRV 372

Query: 200 EKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
           ++A     ++  +  +P        + +   L    R +  + + EE+  +GC 
Sbjct: 373 DEALALFDRMKKNGYVP---NVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCT 423



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 4/118 (3%)

Query: 97  FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR-KKDVQGALMVLKEMEQANVKPDSQTFS 155
           ++ A  L  +L+   ++PT   YN ++  Y R  +     + +L+EM  A V+PD  T S
Sbjct: 196 YERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTAS 255

Query: 156 YLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAE 210
            +I  C  +   +  + ++E LK+ G       + AL+  +   G + +A +V+ + E
Sbjct: 256 TVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEME 313



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/106 (23%), Positives = 48/106 (45%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++ P   SY  +I   C    +  A  ++ +M+   + P   T ++++        FN  
Sbjct: 666 QVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEA 725

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMN 111
           R +   + HHNLKP   T+R ++    K K +D A   L ++ + +
Sbjct: 726 REVVNYMIHHNLKPMELTYRRVVDSYCKAKRYDEAREFLSEISDTD 771



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 33/160 (20%), Positives = 71/160 (44%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P++ +Y  ++T   ++ +V  AL + ++M +   VP+  T N I     +   F  + 
Sbjct: 352 LLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAML 411

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +      PN  T+ +M+++  K    D    +L+ +K   +  +   YN +++ Y
Sbjct: 412 EMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAY 471

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED 166
            R      A  +  EM  +   P   T++ L++  S + D
Sbjct: 472 GRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGD 511


>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 652

 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 118/256 (46%), Gaps = 40/256 (15%)

Query: 30  ALDVVEQMV-QGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
           AL++  +MV  G + P   T+  ++    +  +  L RR++  +  H ++        ++
Sbjct: 205 ALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDLELGRRLHGYVESHGVRCTVRLMNVVM 264

Query: 89  SLNVKIKDFDSA------------------------YSLLDDLKEM-NLMPTASMY--NA 121
            + +K  D + A                        + L+DD +++ + MP   ++  NA
Sbjct: 265 DMYIKCGDLERAKSVFEGIDKKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNA 324

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI-----IKYYEQLKS 176
           +M GY + K  + AL +  +M++A V+PD  T   L+  CS    +     + +Y   + 
Sbjct: 325 LMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQLGALEMGMWVHHYIDRRR 384

Query: 177 AGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDA 236
               ++  +   L++ Y+ CG  EKA +V    EIP K+ +   +A++S LA+HG    A
Sbjct: 385 V--SLSVMLGTNLVDMYSKCGNIEKAIRVF--KEIPEKN-ALTWTAMISGLANHGHADVA 439

Query: 237 IIVYEEIKEAGCNLEP 252
           I  ++ + E G  L+P
Sbjct: 440 IKYFQRMIELG--LQP 453


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 104/247 (42%), Gaps = 4/247 (1%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
            I P   ++  L+   C   +V  A + +  M++  + P   T NS++       E N+ 
Sbjct: 275 NINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMA 334

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           + I   + H  +     ++  +I+   KIK  D A  L  ++    + P    YN+++ G
Sbjct: 335 KSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDG 394

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQIT 182
             +   +  AL ++  M     +PD  T+S ++   C N   +  I    +LK  G +  
Sbjct: 395 LCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPN 454

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRS-EVKSALVSALASHGRTSDAIIVYE 241
            Y +  LI+     G  E AR +  D  +   + +    + ++    SHG   +A+ +  
Sbjct: 455 MYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLS 514

Query: 242 EIKEAGC 248
           ++K+  C
Sbjct: 515 KMKDNSC 521



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 87/440 (19%), Positives = 179/440 (40%), Gaps = 41/440 (9%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P+  ++  LI   C L  +  A  V+ ++++    P T T+N+ +        F L  
Sbjct: 101 IKPNFVNFNILINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKG------FCLKG 154

Query: 67  RIYPMICHHN------LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           +I+  +  H+         +  ++ ++I+   K+ +  +A  LL  +    +     MY+
Sbjct: 155 QIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYS 214

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSA 177
            I+    + K+V  A  +  EM    +  +  T+S LI         +D I  + ++ S 
Sbjct: 215 TIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSE 274

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQ-VVLDAEIPVKSRSEVKSALVSALASHGRTSDA 236
                 Y F  L++A+   G  ++A+  + +  +  +K      ++L+         + A
Sbjct: 275 NINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMA 334

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW---------MDG 287
             +   +   G     R+   +I        +++ ++L +E+H    +         +DG
Sbjct: 335 KSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDG 394

Query: 288 CCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDL 347
            C+         ++S A +L+  + D+ +  ++       +  C+    D       + L
Sbjct: 395 LCKS-------GRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDK-----AIAL 442

Query: 348 LQFIKDELGLPPSRKCLDFLL-GACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAF 406
           L  +KD+ G+ P+      L+ G C   R L+ A  I+++    G    V +Y  M + F
Sbjct: 443 LIKLKDQ-GIRPNMYTYTILIDGLCKGGR-LEDARNIFEDLLVKGYNLTVNTYTVMIQGF 500

Query: 407 LASGNRKSASKLLSKMPKDD 426
            + G    A  LLSKM KD+
Sbjct: 501 CSHGLFDEALSLLSKM-KDN 519



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/205 (20%), Positives = 90/205 (43%), Gaps = 3/205 (1%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M  K  I P   +Y  L+   C + +V++A  ++  M    +  +  + N +++   +  
Sbjct: 305 MMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIK 364

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
             +   +++  + H  + PN  T+ S+I    K      A  L+D + +    P    Y+
Sbjct: 365 MVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYS 424

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSA 177
           +I+    +   V  A+ +L +++   ++P+  T++ LI   C     ED    +E L   
Sbjct: 425 SILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVK 484

Query: 178 GGQITKYVFMALINAYTTCGEFEKA 202
           G  +T   +  +I  + + G F++A
Sbjct: 485 GYNLTVNTYTVMIQGFCSHGLFDEA 509



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 1/158 (0%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           MH K +I P+  +Y  LI   C   ++  AL++++ M      P   T +SIL A  +++
Sbjct: 376 MHHK-QIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNH 434

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
             +    +   +    ++PN  T+  +I    K    + A ++ +DL       T + Y 
Sbjct: 435 LVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYT 494

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            ++ G+        AL +L +M+  +  PD+ T+  +I
Sbjct: 495 VMIQGFCSHGLFDEALSLLSKMKDNSCIPDAITYEIII 532


>gi|302756099|ref|XP_002961473.1| hypothetical protein SELMODRAFT_77426 [Selaginella moellendorffii]
 gi|300170132|gb|EFJ36733.1| hypothetical protein SELMODRAFT_77426 [Selaginella moellendorffii]
          Length = 643

 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 102/209 (48%), Gaps = 13/209 (6%)

Query: 34  VEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVK 93
           +++M +  + P++ T  ++L AC  +      R+I+  +    L        ++I++  +
Sbjct: 304 MDEMRRALVEPNSVTFVNLLVACAATGFLEAGRKIHAEVASLGLLSTLSVGGALINMYSE 363

Query: 94  IKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQT 153
             +   A S+ D +   NL+     +N ++  Y    D + AL V ++ME   +KPD  T
Sbjct: 364 CGNLVLAKSVFDSVPHKNLVS----WNVLIGSYAGDGDGKEALGVHQKMELEGLKPDKFT 419

Query: 154 FSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAE 210
           F  ++H CS  E + +    +  + ++G +  + +  ALIN Y  CG  E+AR V LD  
Sbjct: 420 FISVLHACSASEALAEGKAIHALIAASGLERDEAIGTALINLYGKCGSLEQARNVFLD-- 477

Query: 211 IPVKSRSEVKS--ALVSALASHGRTSDAI 237
             +KSR  + +  ++++A  + G   D +
Sbjct: 478 --MKSRRNLVTWNSMLAAACTKGGLEDCV 504



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 84/182 (46%), Gaps = 9/182 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL V ++M    L P   T  S+LHAC  S      + I+ +I    L+ +     ++I+
Sbjct: 401 ALGVHQKMELEGLKPDKFTFISVLHACSASEALAEGKAIHALIAASGLERDEAIGTALIN 460

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           L  K    + A ++  D+K    + T   +N+++A    K  ++  + ++  M    + P
Sbjct: 461 LYGKCGSLEQARNVFLDMKSRRNLVT---WNSMLAAACTKGGLEDCVEIIHMMGLEGIMP 517

Query: 150 DSQTFSYLIHNCSNEEDIIKYYEQLKSAG-----GQITKYVFMALINAYTTCGEFEKARQ 204
           D  TF  ++  CS+   I +  +   SAG        TK+ ++ +++     G  E+A++
Sbjct: 518 DELTFLSVLFACSHGGSIQQGLDLFLSAGVDYGIATNTKH-YVCVVDILGRVGRLEEAQE 576

Query: 205 VV 206
           V+
Sbjct: 577 VL 578



 Score = 45.4 bits (106), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 94/202 (46%), Gaps = 14/202 (6%)

Query: 48  TINSILHACEESYEFNLVRRIYPMICHHNLKPNSETF--RSMISLNVKIKDFDSAYSLLD 105
           T+ S L AC  + +    R I+      +L   SE     +++S+  K    + A ++  
Sbjct: 115 TLVSALKACAVAGDLEEGRGIHA--SARSLGYESEIIVATALVSMYGKCGHLEEAKAVFA 172

Query: 106 DLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE- 164
            L E N +     +NA++A Y +    + A+ + + M    +KPD+ TF  ++     E 
Sbjct: 173 TLVERNRVS----WNAMLAAYAQNGHCEEAVRLYRLMCFEGIKPDATTFVSVLDGWKGEG 228

Query: 165 EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSAL 223
           E   + ++Q+  +G      +  AL++ Y + G  + AR V    AE  V S     +A+
Sbjct: 229 EHGTRIHDQVLESGFGSNTTLANALVSMYGSGGRVDDARYVFDGIAEKTVVS----WNAM 284

Query: 224 VSALASHGRTSDAIIVYEEIKE 245
           ++A A +GR   A+ ++ ++ E
Sbjct: 285 LTAYAQNGRYGKAVDLFWKMDE 306


>gi|125551633|gb|EAY97342.1| hypothetical protein OsI_19265 [Oryza sativa Indica Group]
          Length = 793

 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 82/426 (19%), Positives = 172/426 (40%), Gaps = 18/426 (4%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  L+           AL V+++M      P   T N +      +  F    + 
Sbjct: 284 PCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKC 343

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    L PN+ T+ ++++    +   D A +L D +K+   +P  + YN I     +
Sbjct: 344 LDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGK 403

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLKSAGGQITKYV 185
           K      L +L+EM ++   P+  T++ ++  C     E+ + +    +KS G ++++  
Sbjct: 404 KSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDT 463

Query: 186 FMALINAYTTCGE----FEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
           +  LI+AY  CG     F+   +++     P  +     +AL++ L+  G  S A  +  
Sbjct: 464 YNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLT---TYNALLNVLSRQGDWSTAQSIVS 520

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFK-- 299
           ++ + G     ++   L++     G    +  + +EV+    +        L    FK  
Sbjct: 521 KMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCR 580

Query: 300 QLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPP 359
           +L       +++K +    ++ +   F+ +    A           ++   IK   GL P
Sbjct: 581 RLEGVEKAFQEVKAQGYKPDLVI---FNSMLAMYAKNGL--YSKATEMFDSIKQS-GLSP 634

Query: 360 SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLL 419
                + L+     + +   A  I K+ +++ +  +V+SY  +   F   G  K A ++L
Sbjct: 635 DLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRIL 694

Query: 420 SKMPKD 425
           S+M  D
Sbjct: 695 SEMIAD 700



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 83/171 (48%), Gaps = 5/171 (2%)

Query: 40  GELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDS 99
           G + PS   + +++ A  +      V + +  +     KP+   F SM+++  K   +  
Sbjct: 560 GTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSK 619

Query: 100 AYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159
           A  + D +K+  L P    YN++M  Y +  +   A  +LK+++ + VKPD  +++ +I 
Sbjct: 620 ATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVI- 678

Query: 160 NCSNEEDIIKYYEQLKS---AGGQITKYV-FMALINAYTTCGEFEKARQVV 206
           N   ++ +IK  +++ S   A G     V +  L+  Y +   F +AR+VV
Sbjct: 679 NGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVV 729



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 100/234 (42%), Gaps = 23/234 (9%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICH-------HNLKPNSE 82
           AL +  ++ +  +VP+  T N +L        +  + R +P I           ++P+  
Sbjct: 199 ALQLFAELRRQGVVPTIVTYNVVLDV------YGRMGRSWPRIVALLEEMRAAGVEPDDF 252

Query: 83  TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM 142
           T  ++I+   +    D A +  +DLK    +P    YNA++  + +  +   AL VLKEM
Sbjct: 253 TASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEM 312

Query: 143 EQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEF 199
           E +  +PD+ T++ L    +     E+  K  + + S G     + +  ++ AY   G  
Sbjct: 313 EDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRV 372

Query: 200 EKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
           ++A     ++  +  +P        + +   L    R +  + + EE+  +GC 
Sbjct: 373 DEALALFDRMKKNGYVP---NVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCT 423



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 4/118 (3%)

Query: 97  FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR-KKDVQGALMVLKEMEQANVKPDSQTFS 155
           ++ A  L  +L+   ++PT   YN ++  Y R  +     + +L+EM  A V+PD  T S
Sbjct: 196 YERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTAS 255

Query: 156 YLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAE 210
            +I  C  +   +  + ++E LK+ G       + AL+  +   G + +A +V+ + E
Sbjct: 256 TVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEME 313



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/106 (23%), Positives = 48/106 (45%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++ P   SY  +I   C    +  A  ++ +M+   + P   T ++++        FN  
Sbjct: 666 QVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEA 725

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMN 111
           R +   + HHNLKP   T+R ++    K K +D A   L ++ + +
Sbjct: 726 REVVNYMIHHNLKPMELTYRRVVDSYCKAKRYDEAREFLSEISDTD 771



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 33/160 (20%), Positives = 71/160 (44%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P++ +Y  ++T   ++ +V  AL + ++M +   VP+  T N I     +   F  + 
Sbjct: 352 LLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAML 411

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +      PN  T+ +M+++  K    D    +L+ +K   +  +   YN +++ Y
Sbjct: 412 EMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAY 471

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED 166
            R      A  +  EM  +   P   T++ L++  S + D
Sbjct: 472 GRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGD 511


>gi|410109923|gb|AFV61041.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hederifolia]
          Length = 431

 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/278 (20%), Positives = 127/278 (45%), Gaps = 9/278 (3%)

Query: 9   PSSASYKKLITYS-CDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           P+S  +  ++ +  C    + VA  V + + +  L PS  + N++++      + N   R
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFR 198

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +   +    ++P+  T+  +I+   K    D A  L D++    L+P    +  ++ G+ 
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHC 258

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY---EQLKSAGGQITKY 184
           +   V  A+ + K+M    + PD  T++ LI+    + D+ + +   +++   G +  K+
Sbjct: 259 KNGRVDLAMEIYKQMLSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPDKF 318

Query: 185 VFMALINAYTTCGEFEKA---RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
            +  LI+     G+ + A   R+ ++   I +   +   +AL+S L   GR+ DA  +  
Sbjct: 319 TYXTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVA--YTALISGLCQEGRSVDAEKMLR 376

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279
           E+   G   + R    +I     +G++ +  +LL+E+ 
Sbjct: 377 EMLSVGLKPDDRTYTMIINEFCKKGDVWKGSKLLKEMQ 414



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 83/169 (49%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  ++  LI   C   +V +A+++ +QM+   L+P   T N++++   +  +     
Sbjct: 243 LIPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQCLLPDLITYNTLIYGLXKKGDLKQAH 302

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +    LKP+  T+ ++I    K  D D+A+     + + N+      Y A+++G 
Sbjct: 303 DLIDEMSMKGLKPDKFTYXTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGL 362

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK 175
            ++     A  +L+EM    +KPD +T++ +I+    + D+ K  + LK
Sbjct: 363 CQEGRSVDAEKMLREMLSVGLKPDDRTYTMIINEFCKKGDVWKGSKLLK 411



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 92/213 (43%), Gaps = 7/213 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  LI   C   K+  A ++ ++M+   L+P+  T  +++    ++   +L  
Sbjct: 208 VQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAM 267

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            IY  +    L P+  T+ ++I    K  D   A+ L+D++    L P    Y  ++ G 
Sbjct: 268 EIYKQMLSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPDKFTYXTLIDGC 327

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQITK 183
            ++ D+  A    K M Q N++ D   ++ LI     E    D  K   ++ S G +   
Sbjct: 328 CKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDD 387

Query: 184 YVFMALINAYTTCGEFEKARQVV----LDAEIP 212
             +  +IN +   G+  K  +++     D  +P
Sbjct: 388 RTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVP 420



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 85/215 (39%), Gaps = 10/215 (4%)

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
           F LV   Y  I       +   F  ++    K  D   A S+ D + +  L P+   YN 
Sbjct: 123 FKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNT 182

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAG 178
           +M GY R  D+     +   M  + V+PD  T+S LI+    E   +D  + ++++   G
Sbjct: 183 LMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKG 242

Query: 179 GQITKYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTS 234
                  F  LI+ +   G  + A    +Q++    +P        + L+  L   G   
Sbjct: 243 LIPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQCLLP---DLITYNTLIYGLXKKGDLK 299

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN 269
            A  + +E+   G   +      LI+    EG+L+
Sbjct: 300 QAHDLIDEMSMKGLKPDKFTYXTLIDGCCKEGDLD 334



 Score = 42.4 bits (98), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 106/240 (44%), Gaps = 23/240 (9%)

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           Y +   H L    +T R ++   +K+K F   +   +++ E     +   +N +M  + +
Sbjct: 95  YRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCK 154

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA----GGQITKY 184
             D++ A  V   + +  ++P   +++ L++      D+ + + +LKSA    G Q   Y
Sbjct: 155 DGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGF-RLKSAMLASGVQPDVY 213

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKS---RSEVKSALVSALASHGRTSDAIIVYE 241
            +  LIN      + + A +  L  E+ VK         + L+     +GR   A+ +Y+
Sbjct: 214 TYSVLINGLCKESKMDDANE--LFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYK 271

Query: 242 EIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVH----DPDYW-----MDGCCR 290
           ++    C L P  +    LI  L  +G+L +   L++E+      PD +     +DGCC+
Sbjct: 272 QMLSQ-C-LLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPDKFTYXTLIDGCCK 329


>gi|242078691|ref|XP_002444114.1| hypothetical protein SORBIDRAFT_07g008510 [Sorghum bicolor]
 gi|241940464|gb|EES13609.1| hypothetical protein SORBIDRAFT_07g008510 [Sorghum bicolor]
          Length = 718

 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 85/171 (49%), Gaps = 10/171 (5%)

Query: 80  NSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVL 139
           ++ TF ++I+   +      A +L D++   N +  ++M N    GY +  D + AL + 
Sbjct: 142 DASTFNTLITAYARAGRVADARALFDEMPVRNAVSWSAMVN----GYVQAGDAREALQIF 197

Query: 140 KEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTC 196
            +M+  +V+PD      ++  C+     E     +  LK+ G +IT +   AL++ Y+ C
Sbjct: 198 AQMQAEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIRITVFFGTALVDMYSKC 257

Query: 197 GEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           GE + A +V    E          + ++ +LA HGR S+A++++ ++  +G
Sbjct: 258 GEVQLAMEVFERME---DKNVLAWTTMIKSLAMHGRGSEALMLFTQMVSSG 305


>gi|125596712|gb|EAZ36492.1| hypothetical protein OsJ_20823 [Oryza sativa Japonica Group]
          Length = 604

 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 70/321 (21%), Positives = 136/321 (42%), Gaps = 47/321 (14%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVP-STETINSILHA-CEESYE----- 61
           P++ +Y  LI   C +  + +A ++VE+M + E VP +  T+N+I+   C          
Sbjct: 244 PNTVTYNCLIDAFCRVGNISMAYELVEKM-ENEGVPQNIVTLNTIVGGLCRAGRTGAALE 302

Query: 62  -FNLVRRIYP--------------MICHHN----------------LKPNSETFRSMISL 90
            F   R ++P               + H N                  P++  + +MIS 
Sbjct: 303 FFREKRTVWPEGKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISG 362

Query: 91  NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD 150
             +    + A S+   +KE         YN ++AG+ RKK +  A  +L+EM++  ++PD
Sbjct: 363 LTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPD 422

Query: 151 SQTFSYLIHNCSNEEDIIKYYEQLKSA---GGQITKYVFMALINAYTTCGEFEKARQVVL 207
             T++ L+       D     E L      G Q +   F  L++ Y   G+ ++A +++ 
Sbjct: 423 VCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILR 482

Query: 208 DA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
              E  +   + + + L+  L   G    AI +++E+KE           AL++ L  + 
Sbjct: 483 SMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKN 542

Query: 267 ELNRLIQLLEEVHD----PDY 283
              +  +L++++ +    PDY
Sbjct: 543 MPEKAFELMDQMREERCFPDY 563



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 84/437 (19%), Positives = 164/437 (37%), Gaps = 59/437 (13%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGEL--VPSTETINSILHA--- 55
           M     + P   +Y  L+   C   +V  AL V++ M + +L   P   T+N+++     
Sbjct: 162 MQGCASVRPDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTVVDGLCK 221

Query: 56  ---CEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNL 112
               +E+  F   R    M   H   PN+ T+  +I    ++ +   AY L++ ++   +
Sbjct: 222 SGRVQEALAFVEQR----MSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGV 277

Query: 113 MPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA--NVKPDSQTFSYLIH---NCSNEEDI 167
                  N I+ G  R      AL   +E        K ++ T+S L+    + +N    
Sbjct: 278 PQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVGALLHTNNVGMA 337

Query: 168 IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSAL 227
           ++ + +  S G      ++  +I                                  S L
Sbjct: 338 MELFHEKMSEGHSPDAIMYFTMI----------------------------------SGL 363

Query: 228 ASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDG 287
              GR  DA  +   +KEAG  L+ +A   LI     +  L+   +LL+E+ +     D 
Sbjct: 364 TQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDV 423

Query: 288 CC--RLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGL 345
           C    L+    +    ++  +LL ++ D      +         +C++   D       L
Sbjct: 424 CTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDE-----AL 478

Query: 346 DLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKA 405
            +L+ + DE G+ P+    + L+       D+  A  ++ E +   +P NV ++  + K 
Sbjct: 479 RILRSM-DESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKG 537

Query: 406 FLASGNRKSASKLLSKM 422
                  + A +L+ +M
Sbjct: 538 LRDKNMPEKAFELMDQM 554



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 76/172 (44%), Gaps = 2/172 (1%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           ++ I P   +Y  L++ SC         +++ +M+     PS  T  +++H   +  + +
Sbjct: 416 EVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKID 475

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              RI   +    + PN+  + ++I    K  D D A  L D++KE ++    + +NA++
Sbjct: 476 EALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALL 535

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH--NCSNEEDIIKYYEQ 173
            G   K   + A  ++ +M +    PD  T   L+       E D +K + Q
Sbjct: 536 KGLRDKNMPEKAFELMDQMREERCFPDYVTVDVLMEWLPVIGETDRLKRFMQ 587


>gi|357143144|ref|XP_003572818.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Brachypodium distachyon]
          Length = 496

 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 99/237 (41%), Gaps = 23/237 (9%)

Query: 54  HACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLM 113
           HA + +     + R +P        P+  T+ ++     ++KD   A  LL  + E  + 
Sbjct: 185 HASKAASLVRALERRFP--------PDVVTYNTLADGWCRVKDTSRALDLLRQMAESGIA 236

Query: 114 PTASMYNAIMAGYFRKKDVQGALMVLKEMEQA-----NVKPDSQTFSYLIHN---CSNEE 165
           PT + YN I+ G+FR   +Q A     +M++      N KPD  +++ +IH        +
Sbjct: 237 PTKTTYNVILKGFFRAGQLQHAWNFFLQMKKRGSKDENCKPDVVSYTTIIHGLGVAGQLD 296

Query: 166 DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA----EIPVKSRSEVKS 221
              K ++++   G   T   + ALI      G  E A  V  D      IP        +
Sbjct: 297 KARKLFDEMSKEGCPPTIATYNALIQVICKKGNVEDAVTVFDDMIRKDYIP---NVVTYT 353

Query: 222 ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            L+  L   G+   A+ + E +K  GC    +    LI +   EGE+++ + L E +
Sbjct: 354 VLIRGLCHVGKIDRAMKLMERMKNEGCEPVVQTYNVLIRYSFEEGEMDKALHLFERM 410



 Score = 39.3 bits (90), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 28/142 (19%), Positives = 64/142 (45%), Gaps = 5/142 (3%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+ A+Y  LI   C    V  A+ V + M++ + +P+  T   ++       + +   ++
Sbjct: 312 PTIATYNALIQVICKKGNVEDAVTVFDDMIRKDYIPNVVTYTVLIRGLCHVGKIDRAMKL 371

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL-KEMNLMPTASMYNAIMAGYF 127
              + +   +P  +T+  +I  + +  + D A  L + + K    +P    YN +++  F
Sbjct: 372 MERMKNEGCEPVVQTYNVLIRYSFEEGEMDKALHLFERMSKGEECLPNQDTYNIVISAMF 431

Query: 128 RKKDVQ----GALMVLKEMEQA 145
            +K  +     A MV++ +E+ 
Sbjct: 432 VRKRAEDMAIAARMVMEMVERG 453


>gi|222612526|gb|EEE50658.1| hypothetical protein OsJ_30888 [Oryza sativa Japonica Group]
          Length = 869

 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/283 (19%), Positives = 116/283 (40%), Gaps = 14/283 (4%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P   T N +L  C  S +F+   ++  ++    LKP+ + + ++IS   K    D+ + +
Sbjct: 239 PKMSTFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEV 298

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163
             ++    + P  + Y+A++ G  +   V  A      M    VKPD   F+ LI  C  
Sbjct: 299 FHEMVSAGIEPNVNTYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACGE 358

Query: 164 EEDIIKYYEQLKSAGGQITK-----------YVFMALINAYTTCGEFEKARQVV-LDAEI 211
              + + ++ L     + ++               AL+      G+ ++AR+V  +  E 
Sbjct: 359 SGAVARAFDVLSEMTAEASESKGSKPILPDHVTVGALMKTCIQAGQADRAREVYKMLQEY 418

Query: 212 PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRL 271
            +K   EV +  + + +  G    A+ +YE++ + G   +   + AL++        +  
Sbjct: 419 NIKGTPEVYTIALRSCSLTGDLGFALKIYEDMNKIGVQPDEMFLSALVDVAGHARRADAA 478

Query: 272 IQLLEEVHDPDYWMDGCC--RLILHCVRFKQLSSATDLLKQLK 312
            +++++     Y +       L+  C   K    A  L +++K
Sbjct: 479 FEIMKDARAKGYQVGTIAYSSLMGACCNAKDWKKALQLFEEIK 521



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/267 (20%), Positives = 117/267 (43%), Gaps = 16/267 (5%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMV------QGE--LVPSTETINSILHACE 57
           ++ P    +  LI+   +   V  A DV+ +M       +G   ++P   T+ +++  C 
Sbjct: 341 KVKPDRVVFNALISACGESGAVARAFDVLSEMTAEASESKGSKPILPDHVTVGALMKTCI 400

Query: 58  ESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTAS 117
           ++ + +  R +Y M+  +N+K   E +   +       D   A  + +D+ ++ + P   
Sbjct: 401 QAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYEDMNKIGVQPDEM 460

Query: 118 MYNAI--MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKYYE 172
             +A+  +AG+ R+ D   A  ++K+      +  +  +S L+  C N +D    ++ +E
Sbjct: 461 FLSALVDVAGHARRADA--AFEIMKDARAKGYQVGTIAYSSLMGACCNAKDWKKALQLFE 518

Query: 173 QLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHG 231
           ++KS     T  +  ALI A     +  K+ +V+ + + + V       S L  A   + 
Sbjct: 519 EIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKRLGVCPNMITYSVLFVACERNA 578

Query: 232 RTSDAIIVYEEIKEAGCNLEPRAVIAL 258
                + ++E++K    +L P  V  L
Sbjct: 579 EAQLGLDLFEQLKIDSIDLNPTIVGCL 605


>gi|52076779|dbj|BAD45723.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
          Length = 629

 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 70/321 (21%), Positives = 136/321 (42%), Gaps = 47/321 (14%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVP-STETINSILHA-CEESYE----- 61
           P++ +Y  LI   C +  + +A ++VE+M + E VP +  T+N+I+   C          
Sbjct: 244 PNTVTYNCLIDAFCRVGNISMAYELVEKM-ENEGVPQNIVTLNTIVGGLCRAGRTGAALE 302

Query: 62  -FNLVRRIYP--------------MICHHN----------------LKPNSETFRSMISL 90
            F   R ++P               + H N                  P++  + +MIS 
Sbjct: 303 FFREKRTVWPEGKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISG 362

Query: 91  NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD 150
             +    + A S+   +KE         YN ++AG+ RKK +  A  +L+EM++  ++PD
Sbjct: 363 LTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPD 422

Query: 151 SQTFSYLIHNCSNEEDIIKYYEQLKSA---GGQITKYVFMALINAYTTCGEFEKARQVVL 207
             T++ L+       D     E L      G Q +   F  L++ Y   G+ ++A +++ 
Sbjct: 423 VCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILR 482

Query: 208 DA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
              E  +   + + + L+  L   G    AI +++E+KE           AL++ L  + 
Sbjct: 483 SMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKN 542

Query: 267 ELNRLIQLLEEVHD----PDY 283
              +  +L++++ +    PDY
Sbjct: 543 MPEKAFELMDQMREERCFPDY 563



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 84/437 (19%), Positives = 164/437 (37%), Gaps = 59/437 (13%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGEL--VPSTETINSILHA--- 55
           M     + P   +Y  L+   C   +V  AL V++ M + +L   P   T+N+++     
Sbjct: 162 MQGCASVRPDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTVVDGLCK 221

Query: 56  ---CEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNL 112
               +E+  F   R    M   H   PN+ T+  +I    ++ +   AY L++ ++   +
Sbjct: 222 SGRVQEALAFVEQR----MSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGV 277

Query: 113 MPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA--NVKPDSQTFSYLIH---NCSNEEDI 167
                  N I+ G  R      AL   +E        K ++ T+S L+    + +N    
Sbjct: 278 PQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVGALLHTNNVGMA 337

Query: 168 IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSAL 227
           ++ + +  S G      ++  +I                                  S L
Sbjct: 338 MELFHEKMSEGHSPDAIMYFTMI----------------------------------SGL 363

Query: 228 ASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDG 287
              GR  DA  +   +KEAG  L+ +A   LI     +  L+   +LL+E+ +     D 
Sbjct: 364 TQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDV 423

Query: 288 CC--RLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGL 345
           C    L+    +    ++  +LL ++ D      +         +C++   D       L
Sbjct: 424 CTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDE-----AL 478

Query: 346 DLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKA 405
            +L+ + DE G+ P+    + L+       D+  A  ++ E +   +P NV ++  + K 
Sbjct: 479 RILRSM-DESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKG 537

Query: 406 FLASGNRKSASKLLSKM 422
                  + A +L+ +M
Sbjct: 538 LRDKNMPEKAFELMDQM 554



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 76/172 (44%), Gaps = 2/172 (1%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           ++ I P   +Y  L++ SC         +++ +M+     PS  T  +++H   +  + +
Sbjct: 416 EVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKID 475

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              RI   +    + PN+  + ++I    K  D D A  L D++KE ++    + +NA++
Sbjct: 476 EALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALL 535

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH--NCSNEEDIIKYYEQ 173
            G   K   + A  ++ +M +    PD  T   L+       E D +K + Q
Sbjct: 536 KGLRDKNMPEKAFELMDQMREERCFPDYVTVDVLMEWLPVIGETDRLKRFMQ 587


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 116/255 (45%), Gaps = 18/255 (7%)

Query: 12  ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPM 71
            S+  +I+    + K   A+D+  ++++  L P + TI  +L AC +  + N    I+  
Sbjct: 179 VSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKC 238

Query: 72  ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131
           I    +  N     S++ +  K  + + A S+ D + E +++     + A++ GY     
Sbjct: 239 IMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVS----WGAMIQGYALNGL 294

Query: 132 VQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFM---- 187
            + A+ +  +M++ NVKPD  T   ++  C+     +   E  +   G + +  F+    
Sbjct: 295 PKEAIDLFLQMQRENVKPDCYTVVGVLSACAR----LGALELGEWVSGLVDRNEFLYNPV 350

Query: 188 ---ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
              ALI+ Y  CG   +A +V     +  K R  V +A++S LA +G    +  ++ +++
Sbjct: 351 LGTALIDLYAKCGSMSRAWEVF--KGMKEKDRV-VWNAIISGLAMNGYVKISFGLFGQVE 407

Query: 245 EAGCNLEPRAVIALI 259
           + G   +    I L+
Sbjct: 408 KLGIKPDGNTFIGLL 422



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 103/229 (44%), Gaps = 18/229 (7%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+D+  QM +  + P   T+  +L AC       L   +  ++  +    N     ++I 
Sbjct: 298 AIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALID 357

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           L  K      A+ +   +KE + +    ++NAI++G      V+ +  +  ++E+  +KP
Sbjct: 358 LYAKCGSMSRAWEVFKGMKEKDRV----VWNAIISGLAMNGYVKISFGLFGQVEKLGIKP 413

Query: 150 DSQTFSYLIHNCSNE---EDIIKYYEQLK---SAGGQITKYVFMALINAYTTCGEFEKAR 203
           D  TF  L+  C++    ++  +Y+  +    S    I  Y  M  ++     G  ++A 
Sbjct: 414 DGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCM--VDLLGRAGLLDEAH 471

Query: 204 QVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP 252
           Q++ +  +P+++ + V  AL+ A   H  T  A +  +++ E    LEP
Sbjct: 472 QLIRN--MPMEANAIVWGALLGACRIHRDTQLAELALKQLIE----LEP 514


>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
 gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 133/291 (45%), Gaps = 32/291 (10%)

Query: 33  VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92
           V E+M +  L PS    N+++    ++ + +  R+++  +   N+     +F  MI    
Sbjct: 193 VFERMPERNL-PSW---NAMISGLGKAGDLSGARKVFDEMVERNVV----SFTVMIDGYA 244

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
           K+ D  SA +L D+  E +++     ++A+++GY R +    A+ +  EM   NVKPD  
Sbjct: 245 KVGDMASARALFDEAPEKDVVA----WSALISGYSRNEQPNEAVKIFFEMVSMNVKPDEF 300

Query: 153 TFSYLIHNCS--NEEDIIKYYEQLKSAGGQITK--YVFMALINAYTTCGEFEKARQVVLD 208
               L+  CS     D+ K+ +   S     T+  +V  ALI+ +  CG  EKA ++  D
Sbjct: 301 IMVSLMSACSQLGNSDLAKWVDSYLSQTSIDTRQAHVLAALIDMHAKCGNMEKAVKLFQD 360

Query: 209 AEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
               + SR  +   +L+  L+ HGR  +A+ ++  + + G   +  A   ++   +  G 
Sbjct: 361 ----MPSRDLIPCCSLIQGLSIHGRGVEAVELFNRMLDEGLIPDTVAFTVILTACSRGGL 416

Query: 268 LNRLIQLLEE-------VHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQL 311
           +       +        V  P+++   C   +L   R  QL +A DLLK +
Sbjct: 417 IEDGWHFFDTMKNKYSVVPSPNHY--ACMVDLLS--RAGQLRAAYDLLKSM 463


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 118/253 (46%), Gaps = 16/253 (6%)

Query: 11  SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYP 70
           + S+  LI    +  +   AL +V +M +   +P T T++++L    E  +      ++ 
Sbjct: 135 AVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVVHG 194

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
               +    +     S+I +       D +  + D   + +    A ++N+++AGY +  
Sbjct: 195 YAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCD----AVLWNSMLAGYAQNG 250

Query: 131 DVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKS----AGGQITKYVF 186
            V+ AL + + M QA V+P   TFS LI    N   +++  +QL +    A      ++ 
Sbjct: 251 SVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLS-LLRLGKQLHAYLIRARFNDNIFIS 309

Query: 187 MALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
            +LI+ Y  CG  + AR+V    + P + S     +A++   A HG T++A +++E + E
Sbjct: 310 SSLIDMYCKCGNVDIARRVFNGIQSPDIVSW----TAMIMGYALHGPTTEAFVLFERM-E 364

Query: 246 AGCNLEPRAVIAL 258
            G N++P  +  L
Sbjct: 365 LG-NVKPNHITFL 376



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 111/255 (43%), Gaps = 17/255 (6%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS 86
           V  AL +  +M+Q  + P   T +S++ A        L ++++  +       N     S
Sbjct: 252 VEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSS 311

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           +I +  K  + D A  + + ++     P    + A++ GY        A ++ + ME  N
Sbjct: 312 LIDMYCKCGNVDIARRVFNGIQS----PDIVSWTAMIMGYALHGPTTEAFVLFERMELGN 367

Query: 147 VKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVF-MALINAYTTCGEFEKA 202
           VKP+  TF  ++  CS+    ++  KY+  + +  G +       AL +     G+ ++A
Sbjct: 368 VKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEA 427

Query: 203 RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV---IALI 259
              +  +E+ +K  S V S L+ A   H  T    ++ EE+ +    LEP+++   + L 
Sbjct: 428 YNFI--SEMKIKPTSSVWSTLLRACRVHKNT----VLAEEVAKKIFELEPKSMGSHVILS 481

Query: 260 EHLNSEGELNRLIQL 274
              ++ G  N   QL
Sbjct: 482 NMYSASGRWNEAAQL 496


>gi|224055603|ref|XP_002298561.1| predicted protein [Populus trichocarpa]
 gi|222845819|gb|EEE83366.1| predicted protein [Populus trichocarpa]
          Length = 300

 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 79/163 (48%), Gaps = 3/163 (1%)

Query: 34  VEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVK 93
            EQ  +     +    N++  +        L+R  Y  +    ++P+ +TF S+I+  +K
Sbjct: 25  TEQYAKRNYANNLSEYNTVFTSLTAKRRHYLLRDAYDDMVLDGVQPSRDTFHSLIAGTMK 84

Query: 94  IKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQT 153
                 A+   D++K M L+P   +YN +++   + K+   A+ +L EM+ + VKP+ QT
Sbjct: 85  GSRLQDAFYFRDEMKTMGLLPDVVLYNFLISTCGKSKNSDQAIKILDEMKNSGVKPNGQT 144

Query: 154 FSYLIHNCSNEEDIIKYY---EQLKSAGGQITKYVFMALINAY 193
           +  L++ C+    +   Y     + SAG  + K+ +  LI A+
Sbjct: 145 YICLLNECAAAGRLDPVYAIVRDMTSAGVGLNKFCYAGLIAAH 187


>gi|302782654|ref|XP_002973100.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
 gi|300158853|gb|EFJ25474.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
          Length = 674

 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 100/222 (45%), Gaps = 6/222 (2%)

Query: 33  VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92
           +VE+M    + P   T +++++  +   +     + +  +    + P+  T+ S+I +  
Sbjct: 165 LVEEMTGRGIQPDNYTFSTLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDMYG 224

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
           ++   + A  L + LK +N       Y AI   Y R  D Q  + +++EM  +   P++ 
Sbjct: 225 RVGRVNEAVELYEKLKSVNWKLDTVTYGAIANVYARAGDYQSIIQLVQEMRDSGSSPNAV 284

Query: 153 TFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV--VL 207
             + L+   S    +    K + +++++G   T      L+  YT  G +++A +V   L
Sbjct: 285 IMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETL 344

Query: 208 DAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
             E   K    V ++L+ A    GR   A  + +E+K AGCN
Sbjct: 345 KTE-GWKCDVAVYNSLMKACVEGGRVEQAEDILKEMKRAGCN 385



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 86/203 (42%), Gaps = 3/203 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P + ++  LI  +    +   AL   E+M    +VP   T NS++         N   
Sbjct: 174 IQPDNYTFSTLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDMYGRVGRVNEAV 233

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +Y  +   N K ++ T+ ++ ++  +  D+ S   L+ ++++    P A + N +M   
Sbjct: 234 ELYEKLKSVNWKLDTVTYGAIANVYARAGDYQSIIQLVQEMRDSGSSPNAVIMNTLMGTL 293

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITK 183
            +   V  A  V  EM  + V P   T S L+         +   + YE LK+ G +   
Sbjct: 294 SKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETLKTEGWKCDV 353

Query: 184 YVFMALINAYTTCGEFEKARQVV 206
            V+ +L+ A    G  E+A  ++
Sbjct: 354 AVYNSLMKACVEGGRVEQAEDIL 376



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/235 (20%), Positives = 103/235 (43%), Gaps = 41/235 (17%)

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLK 175
           YN ++      + ++ +  +++EM    ++PD+ TFS LI+    C   E+ +K++E++K
Sbjct: 146 YNVMLKILRNGRQLELSEKLVEEMTGRGIQPDNYTFSTLINCAKRCRQPEEALKWFERMK 205

Query: 176 SAG------------------GQITKYV-----------------FMALINAYTTCGEFE 200
           S G                  G++ + V                 + A+ N Y   G+++
Sbjct: 206 SEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLDTVTYGAIANVYARAGDYQ 265

Query: 201 KARQVVLDAEIPVKSRSEV-KSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALI 259
              Q+V +      S + V  + L+  L+  G+ + A  V+ E++ +G +  P  +  L+
Sbjct: 266 SIIQLVQEMRDSGSSPNAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILV 325

Query: 260 EHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQLSSATDLLKQLK 312
           E     G  ++  ++ E +    +  D      L+  CV   ++  A D+LK++K
Sbjct: 326 EMYTRVGAYDQAFEVYETLKTEGWKCDVAVYNSLMKACVEGGRVEQAEDILKEMK 380


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 115/262 (43%), Gaps = 23/262 (8%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL + ++MV   + P   T  +++ AC    +  L   +   +    ++ N     +++ 
Sbjct: 244 ALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLD 303

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA-NVK 148
           +  K  D DSA  L + +   N++     +N+++AGY +      A+ + KEM  A  + 
Sbjct: 304 MYAKFGDLDSARKLFNTMPGRNVVT----WNSMIAGYAQNGQSAMAIELFKEMITAKKLT 359

Query: 149 PDSQTFSYLIHNCSN------EEDIIKYY--EQLKSAGGQITKYVFMALINAYTTCGEFE 200
           PD  T   +I  C +         ++++    Q+K +       +FM     Y+ CG  E
Sbjct: 360 PDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFM-----YSRCGSME 414

Query: 201 KARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALI 259
            A++V  +    + +R  V  + L+S  A+HG   +AI +   +KE G   +    I ++
Sbjct: 415 DAKRVFQE----MATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVL 470

Query: 260 EHLNSEGELNRLIQLLEEVHDP 281
              +  G L    ++ E + DP
Sbjct: 471 TACSHAGLLEEGRKVFESIKDP 492



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 77/360 (21%), Positives = 163/360 (45%), Gaps = 38/360 (10%)

Query: 80  NSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVL 139
           N  T+ +M++   K+KD ++A    D + E +++     +NA+++GY +    + AL + 
Sbjct: 193 NVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVS----WNAMLSGYAQNGLAEEALRLF 248

Query: 140 KEMEQANVKPDSQTFSYLIHNCSNEED------IIKYYEQLKSAGGQITKYVFMALINAY 193
            EM  A ++PD  T+  +I  CS+  D      +++   Q +    Q+  +V  AL++ Y
Sbjct: 249 DEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRI---QLNCFVRTALLDMY 305

Query: 194 TTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPR 253
              G+ + AR+  L   +P ++     S +++  A +G+++ AI +++E+  A   L P 
Sbjct: 306 AKFGDLDSARK--LFNTMPGRNVVTWNS-MIAGYAQNGQSAMAIELFKEMITAK-KLTPD 361

Query: 254 -----AVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLL 308
                +VI+   HL +    N +++ L E +     + G   +I    R   +  A  + 
Sbjct: 362 EVTMVSVISACGHLGALELGNWVVRFLTE-NQIKLSISGHNAMIFMYSRCGSMEDAKRVF 420

Query: 309 KQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLL 368
           +++  +   D ++     S         +       ++L+  +K E G+ P R     +L
Sbjct: 421 QEMATR---DVVSYNTLISGFAAHGHGVEA------INLMSTMK-EGGIEPDRVTFIGVL 470

Query: 369 GACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPH 428
            AC +A  L+    +++  ++  + +    Y  M       G  + A + + +MP  +PH
Sbjct: 471 TACSHAGLLEEGRKVFESIKDPAIDH----YACMVDLLGRVGELEDAKRTMERMPM-EPH 525


>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
          Length = 602

 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 117/280 (41%), Gaps = 11/280 (3%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           TP++ +Y  L+   C    V  AL+++  +      PST   N++L     +  +     
Sbjct: 234 TPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADE 293

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +   +   N  PN  TF  +I    +      A  LL+ + +         YNAI+ G  
Sbjct: 294 LVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLC 353

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE--DIIKYYEQLKSAGGQITKY 184
            +++V GA+ +L +M+    KPD  T++ L+   CS  +  D  +  + +   G      
Sbjct: 354 EQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNV 413

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKS---RSEVKSALVSALASHGRTSDAIIVYE 241
            F  LI      G    A +V    ++P K     S   S ++S LA   +   A+ ++ 
Sbjct: 414 TFNTLIGFLCQKGLMVDAIEVF--KQMPDKGCTPNSITYSTIISGLAKATKLDQALELFN 471

Query: 242 EIKEAGCNLEPRAVIALI-EHLNSEGELNRLIQLLEEVHD 280
           E+   G N  P  +  L+ E LN +  +   IQ + ++ D
Sbjct: 472 EMGHKGFN--PDKIYQLLAECLNDDDTIEEAIQTVRKLQD 509



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 66/351 (18%), Positives = 137/351 (39%), Gaps = 40/351 (11%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
             + + P++ +Y  LI   C+  +V  AL V++ M+     P   T N +L A  +   +
Sbjct: 159 GGMPVQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGY 218

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
                +  ++      PN+ T+  ++       D D A  LL +L      P+   YN +
Sbjct: 219 RQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTV 278

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGG 179
           + G    +    A  ++ EM + N  P+  TF+ +I++   +   +  I+  E++   G 
Sbjct: 279 LKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGC 338

Query: 180 QITKYVFMALINAYTTCGEFEKARQVV----------------------------LDAEI 211
                 + A+IN        + A  ++                            +DAE 
Sbjct: 339 TANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEE 398

Query: 212 PVKSRSE--------VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
            + + ++          + L+  L   G   DAI V++++ + GC         +I  L 
Sbjct: 399 LMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLA 458

Query: 264 SEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQ-LSSATDLLKQLKD 313
              +L++ ++L  E+    +  D   +L+  C+     +  A   +++L+D
Sbjct: 459 KATKLDQALELFNEMGHKGFNPDKIYQLLAECLNDDDTIEEAIQTVRKLQD 509


>gi|356503440|ref|XP_003520516.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Glycine max]
          Length = 832

 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 93/436 (21%), Positives = 187/436 (42%), Gaps = 32/436 (7%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +  I PS ++Y  LI           AL+V ++M +  + P   T N IL A +   +++
Sbjct: 214 RAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIILSAFKSGAQYS 273

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMN--LMPTASMYNA 121
                + ++   +++P++ T   +I   VK++ +D A  + + ++E      P    + +
Sbjct: 274 KALSYFELMKGTHIRPDTTTLNIVIHCLVKLRQYDKAIEIFNSMREKKSECTPDVVTFTS 333

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI-----HNCSNEEDIIKYYEQLKS 176
           I+  Y     V+        M    +KP+  +++ LI         NE  +  ++ ++K 
Sbjct: 334 IIHLYSVCGQVENCEAAFNMMIAEGLKPNIVSYNALIGAYAARGMDNEAHL--FFNEIKQ 391

Query: 177 AGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTS 234
            G +     + +L+NAY    +  KARQ + D     K +  + S  AL+ A  S+G  +
Sbjct: 392 NGFRPDIVSYTSLLNAYGRSQKPHKARQ-IFDRMKRNKLKPNLVSYNALIDAYGSNGLLA 450

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQL-----LEEVHDPDYWMDGCC 289
           DAI +  E+++ G  ++P  V+++   L + G  +R +++       E+           
Sbjct: 451 DAIKILREMEQEG--IQPN-VVSICTLLAACGRCSRKVKIDTVLTAAEMRGIKLNTVAYN 507

Query: 290 RLILHCVRFKQLSSATDLLKQL-KDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLL 348
             I  C+   +   A  L K + K K K D +      S   C+++           + L
Sbjct: 508 AAIGSCMNVGEYDKAIGLYKSMRKKKIKTDSVTYTVLISGC-CKMSKYG--------EAL 558

Query: 349 QFIKD--ELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAF 406
            F+++   L LP S++     + A      +  A   +   +++G   +V++Y  M  A+
Sbjct: 559 SFMEEIMHLKLPLSKEVYSSAICAYSKQGQIVEAESTFNLMKSSGCYPDVVTYTAMLDAY 618

Query: 407 LASGNRKSASKLLSKM 422
            A+ N + A  L  +M
Sbjct: 619 NAAENWEKAYALFEEM 634



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 89/471 (18%), Positives = 187/471 (39%), Gaps = 57/471 (12%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K E TP   ++  +I       +V         M+   L P+  + N+++ A       N
Sbjct: 321 KSECTPDVVTFTSIIHLYSVCGQVENCEAAFNMMIAEGLKPNIVSYNALIGAYAARGMDN 380

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
                +  I  +  +P+  ++ S+++   + +    A  + D +K   L P    YNA++
Sbjct: 381 EAHLFFNEIKQNGFRPDIVSYTSLLNAYGRSQKPHKARQIFDRMKRNKLKPNLVSYNALI 440

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA---GGQ 180
             Y     +  A+ +L+EMEQ  ++P+  +   L+  C      +K    L +A   G +
Sbjct: 441 DAYGSNGLLADAIKILREMEQEGIQPNVVSICTLLAACGRCSRKVKIDTVLTAAEMRGIK 500

Query: 181 ITKYVFMALINAYTTCGEFEKA-------------------------------------- 202
           +    + A I +    GE++KA                                      
Sbjct: 501 LNTVAYNAAIGSCMNVGEYDKAIGLYKSMRKKKIKTDSVTYTVLISGCCKMSKYGEALSF 560

Query: 203 RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
            + ++  ++P+    EV S+ + A +  G+  +A   +  +K +GC  +     A+++  
Sbjct: 561 MEEIMHLKLPLSK--EVYSSAICAYSKQGQIVEAESTFNLMKSSGCYPDVVTYTAMLDAY 618

Query: 263 NSEGELNRLIQLLEEVHDPDYWMD--GCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEM 320
           N+     +   L EE+      +D   C  L+    +  Q      L + +++K      
Sbjct: 619 NAAENWEKAYALFEEMEASSIKLDTIACAALMRSFNKGGQPGRVLSLAESMREK------ 672

Query: 321 AMEYHFSE-IFCQI--ATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDL 377
             E  FS+ IF ++  A +   D +  +D++++I+  L +  S  CL+  L +   +  +
Sbjct: 673 --EIPFSDTIFFEMVSACSILQDWRTAVDMIKYIEPSLPVISS-GCLNQFLHSLGKSGKI 729

Query: 378 KRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPH 428
           +    ++ +   +G   N+ +Y  + K  L+SGN +   ++L  M     H
Sbjct: 730 ETMLKLFFKMLASGADVNLNTYSILLKNLLSSGNWRKYLEVLQWMEDAGIH 780



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/219 (20%), Positives = 100/219 (45%), Gaps = 8/219 (3%)

Query: 36  QMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIK 95
           +M +    P  ET N+I++A   + ++     I   +    + P+  T+ ++I+      
Sbjct: 176 EMQEWRCKPDVETYNAIINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSG 235

Query: 96  DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFS 155
           ++  A ++   + E  + P    +N I++ +        AL   + M+  +++PD+ T +
Sbjct: 236 NWKEALNVCKKMTENGVGPDLVTHNIILSAFKSGAQYSKALSYFELMKGTHIRPDTTTLN 295

Query: 156 YLIH---NCSNEEDIIKYYEQLKSAGGQITKYV--FMALINAYTTCGEFEKARQVVLDAE 210
            +IH        +  I+ +  ++    + T  V  F ++I+ Y+ CG+ E   +   +  
Sbjct: 296 IVIHCLVKLRQYDKAIEIFNSMREKKSECTPDVVTFTSIIHLYSVCGQVENC-EAAFNMM 354

Query: 211 IPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEIKEAG 247
           I    +  + S  AL+ A A+ G  ++A + + EIK+ G
Sbjct: 355 IAEGLKPNIVSYNALIGAYAARGMDNEAHLFFNEIKQNG 393



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 64/317 (20%), Positives = 132/317 (41%), Gaps = 51/317 (16%)

Query: 118 MYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA 177
           +YN ++  + R      A  +  EM++   KPD +T++                      
Sbjct: 153 IYNMMIRLHARHNRTDQARGLFFEMQEWRCKPDVETYN---------------------- 190

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVV---LDAEIPVKSRSEVKSALVSALASHGRTS 234
                     A+INA+   G++  A  ++   L A IP  SRS   + L++A  S G   
Sbjct: 191 ----------AIINAHGRAGQWRWAMNIMDDMLRAAIP-PSRSTYNN-LINACGSSGNWK 238

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLI---QLLEEVH-DPDYWMDGCCR 290
           +A+ V +++ E G   +      ++    S  + ++ +   +L++  H  PD        
Sbjct: 239 EALNVCKKMTENGVGPDLVTHNIILSAFKSGAQYSKALSYFELMKGTHIRPD---TTTLN 295

Query: 291 LILHC-VRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQ 349
           +++HC V+ +Q   A ++   +++K  +    +    S I          + +   +++ 
Sbjct: 296 IVIHCLVKLRQYDKAIEIFNSMREKKSECTPDVVTFTSIIHLYSVCGQVENCEAAFNMM- 354

Query: 350 FIKDELGLPPSRKCLDFLLGACVNARDL-KRAHLIWKEYENAGLPYNVLSYLWMYKAFLA 408
            I +  GL P+    + L+GA   AR +   AHL + E +  G   +++SY  +  A+  
Sbjct: 355 -IAE--GLKPNIVSYNALIGAYA-ARGMDNEAHLFFNEIKQNGFRPDIVSYTSLLNAYGR 410

Query: 409 SGNRKSASKLLSKMPKD 425
           S     A ++  +M ++
Sbjct: 411 SQKPHKARQIFDRMKRN 427


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/247 (21%), Positives = 106/247 (42%), Gaps = 8/247 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   ++  LI   C   K+  AL + + M+   L P   T N+++       + +   
Sbjct: 82  VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKAN 141

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +    + PN  T+  +I  + +    + A+  LD++    ++P    YN+I+ GY
Sbjct: 142 DLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGY 201

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQITK 183
            R  +V      L++M    V PD  T++ LIH    E+   D  K    ++    Q   
Sbjct: 202 CRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDV 261

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASH---GRTSDAIIVY 240
             +  LIN ++  G  ++A  +    ++  K     +   +S +  H   G + +A  ++
Sbjct: 262 VTYNMLINGFSVHGNVQEAGWIF--EKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLH 319

Query: 241 EEIKEAG 247
           +E+ + G
Sbjct: 320 DEMLQRG 326



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 91/208 (43%), Gaps = 39/208 (18%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           MH++ EI P+  +Y  LI   C+  +V  A   +++M+   ++P+  T NSI+       
Sbjct: 147 MHSR-EIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKG----- 200

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
                       C        + F   + +N                    + P    YN
Sbjct: 201 -----------YCRSGNVSKGQKFLQKMMVN-------------------KVSPDLITYN 230

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS---NEEDIIKYYEQLKSA 177
            ++ GY ++  +  A  +L  ME+  V+PD  T++ LI+  S   N ++    +E++ + 
Sbjct: 231 TLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAK 290

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQV 205
           G +  +Y +M++IN + T G  ++A Q+
Sbjct: 291 GIEPDRYTYMSMINGHVTAGNSKEAFQL 318



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/277 (18%), Positives = 118/277 (42%), Gaps = 10/277 (3%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVRR 67
           P   +Y  L+   C   ++  A  ++ +M +  + P   T  +++H  C E  + +   +
Sbjct: 49  PDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEG-KLDKALQ 107

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           ++  + +  L+P+  T+ ++I    +  D D A  L DD+    + P    Y+ ++  + 
Sbjct: 108 LFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHC 167

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKY--- 184
            K  V+ A   L EM    + P+  T++ +I       ++ K  + L+     + K    
Sbjct: 168 EKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKM--MVNKVSPD 225

Query: 185 --VFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
              +  LI+ Y    +   A +++ +  +  V+      + L++  + HG   +A  ++E
Sbjct: 226 LITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFE 285

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           ++   G   +    +++I    + G      QL +E+
Sbjct: 286 KMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEM 322



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/147 (20%), Positives = 65/147 (44%), Gaps = 6/147 (4%)

Query: 102 SLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC 161
           + L +++   L+P   +Y  ++ G+ R   +  AL V  EM      PD  T++ L++  
Sbjct: 2   AYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGL 61

Query: 162 SNEEDII---KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE 218
             E  ++       +++  G       F  LI+ Y   G+ +KA Q + D  +  + R +
Sbjct: 62  CKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQ-LFDTMLNQRLRPD 120

Query: 219 VKS--ALVSALASHGRTSDAIIVYEEI 243
           + +   L+  +   G    A  +++++
Sbjct: 121 IVTYNTLIDGMCRQGDLDKANDLWDDM 147



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 70/176 (39%), Gaps = 4/176 (2%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
            L P+   +  +I    +      A  + D++     +P    YN ++ G  +++ +  A
Sbjct: 11  GLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDA 70

Query: 136 LMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK---YVFMALINA 192
             +L EM +  V PD  TF+ LIH    E  + K  +   +   Q  +     +  LI+ 
Sbjct: 71  EGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDG 130

Query: 193 YTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAG 247
               G+ +KA  +  D        + V  S L+ +    G+  DA    +E+   G
Sbjct: 131 MCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKG 186


>gi|145517919|ref|XP_001444837.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124412270|emb|CAK77440.1| unnamed protein product [Paramecium tetraurelia]
          Length = 981

 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 80/392 (20%), Positives = 172/392 (43%), Gaps = 39/392 (9%)

Query: 78  KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM-YNAIMAGYFRKKDVQGAL 136
           +P+   +  ++   +   D +  + LL+++K+   +    + YN ++ G  RKK +  AL
Sbjct: 389 QPDQIIYNCLLDACINAGDLNRGFQLLNEMKQSQTIQLDEITYNTLIKGCGRKKRLNDAL 448

Query: 137 MVLKEMEQANVKPDSQTFSYLIHNC--SNEEDII-KYYEQLKSAGGQI-TKYVFMALINA 192
            + +EM+   +KP+  +F+ L+ +C   N+ +I  +Y+E+++   G     + +  L+N 
Sbjct: 449 NLFEEMKLIGIKPNRISFNSLLDSCVKCNKMNIAWRYFEEMRKQYGIFPDNFTYSILVNG 508

Query: 193 YTT--CGEFEKARQVVLDAEI----PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA 246
             T      E  R + L  +I      K    + ++L+ A          + ++ E+K  
Sbjct: 509 IKTNHSNRDELLRAITLLEQIQETGQFKPDEILYNSLIDACVKFNEIQKGMELFREMKNK 568

Query: 247 GCNLEPRAVI--ALIEHLNSEGELNRLIQLLEE-------VHDPDYWMDGCCRLILHCVR 297
              +EP +V    LI+    + +LN   ++ EE       ++D  Y   GC  L+  CVR
Sbjct: 569 --QIEPSSVTYGILIKAYGKQNDLNGAFKIFEEMKQKKIPINDVTY---GC--LVDACVR 621

Query: 298 FKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGL 357
             +L  A   + Q+K +       +     + FC++  T+       +     +K     
Sbjct: 622 NDRLDQALQFIDQMKSQNLPINTVLYTTIIKGFCKLNQTEE-----AIKYFDLMKQSPKT 676

Query: 358 PPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASK 417
            P+    + LL   V    L +A  +++E  ++ +  +++++  + K     GN K  ++
Sbjct: 677 YPNLITYNSLLDGMVKNGLLNQADKLFQELVDSKIKPDLITFSTLLKGHCRKGNMKRLNE 736

Query: 418 LLSKMPK-----DDPHVRFVIQAC--KQTYTI 442
            +  M       D+  ++ +++AC  +Q Y I
Sbjct: 737 TVQIMTGLQISPDESLLQLILEACLNQQQYHI 768



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 75/376 (19%), Positives = 158/376 (42%), Gaps = 27/376 (7%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEM-NLMPTASMYNAIMAGYFRKKDVQG 134
           NL P    F  +I    +    + A  LL  +++   + PT    N ++  YF+    + 
Sbjct: 280 NLHPTDIFFNKLIDYAFRKSQVEMAEYLLVFMRDQAKIQPTIVTINTMIDQYFKNNQREK 339

Query: 135 ALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI-----IKYYEQLKSAGGQITKYVFMAL 189
           A    + ++    KPD+ T++ LI+   N +++        +E+ K    Q  + ++  L
Sbjct: 340 AWKTFENLKLTQTKPDNFTYTTLINGLKNSDNMDLKLAFSLFEEYKQY-NQPDQIIYNCL 398

Query: 190 INAYTTCGEFEKARQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           ++A    G+  +  Q++  +     ++      + L+       R +DA+ ++EE+K  G
Sbjct: 399 LDACINAGDLNRGFQLLNEMKQSQTIQLDEITYNTLIKGCGRKKRLNDALNLFEEMKLIG 458

Query: 248 CNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDP-DYWMDGCCRLIL-------HCVRFK 299
                 +  +L++      ++N   +  EE+      + D     IL       H  R  
Sbjct: 459 IKPNRISFNSLLDSCVKCNKMNIAWRYFEEMRKQYGIFPDNFTYSILVNGIKTNHSNR-D 517

Query: 300 QLSSATDLLKQLKD--KFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGL 357
           +L  A  LL+Q+++  +FK DE+             A     ++Q G++L + +K++  +
Sbjct: 518 ELLRAITLLEQIQETGQFKPDEILYNSLID------ACVKFNEIQKGMELFREMKNK-QI 570

Query: 358 PPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASK 417
            PS      L+ A     DL  A  I++E +   +P N ++Y  +  A + +     A +
Sbjct: 571 EPSSVTYGILIKAYGKQNDLNGAFKIFEEMKQKKIPINDVTYGCLVDACVRNDRLDQALQ 630

Query: 418 LLSKMPKDDPHVRFVI 433
            + +M   +  +  V+
Sbjct: 631 FIDQMKSQNLPINTVL 646



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 68/343 (19%), Positives = 146/343 (42%), Gaps = 23/343 (6%)

Query: 110 MNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM-EQANVKPDSQTFSYLIHN---CSNEE 165
           +NL PT   +N ++   FRK  V+ A  +L  M +QA ++P   T + +I      +  E
Sbjct: 279 INLHPTDIFFNKLIDYAFRKSQVEMAEYLLVFMRDQAKIQPTIVTINTMIDQYFKNNQRE 338

Query: 166 DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE--VKSAL 223
              K +E LK    +   + +  LIN        +      L  E    ++ +  + + L
Sbjct: 339 KAWKTFENLKLTQTKPDNFTYTTLINGLKNSDNMDLKLAFSLFEEYKQYNQPDQIIYNCL 398

Query: 224 VSALASHGRTSDAIIVYEEIKEAGC-NLEPRAVIALIEHLNSEGELNRLIQLLEEVH--- 279
           + A  + G  +    +  E+K++    L+      LI+    +  LN  + L EE+    
Sbjct: 399 LDACINAGDLNRGFQLLNEMKQSQTIQLDEITYNTLIKGCGRKKRLNDALNLFEEMKLIG 458

Query: 280 -DPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDK---FKDDEMAMEYHFSEIFCQIAT 335
             P+        L+  CV+  +++ A    ++++ +   F D+     + +S +   I T
Sbjct: 459 IKPNRI--SFNSLLDSCVKCNKMNIAWRYFEEMRKQYGIFPDN-----FTYSILVNGIKT 511

Query: 336 --TDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLP 393
             ++  ++   + LL+ I++     P     + L+ ACV   ++++   +++E +N  + 
Sbjct: 512 NHSNRDELLRAITLLEQIQETGQFKPDEILYNSLIDACVKFNEIQKGMELFREMKNKQIE 571

Query: 394 YNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQAC 436
            + ++Y  + KA+    +   A K+  +M +    +  V   C
Sbjct: 572 PSSVTYGILIKAYGKQNDLNGAFKIFEEMKQKKIPINDVTYGC 614



 Score = 44.7 bits (104), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 38/210 (18%), Positives = 84/210 (40%), Gaps = 43/210 (20%)

Query: 1   MHAKLEITPSSASYKKLI----TYSCDLLKVHVALDVVEQMVQ-GELVPSTETINSILHA 55
           M  +  I P + +Y  L+    T   +  ++  A+ ++EQ+ + G+  P     NS++ A
Sbjct: 489 MRKQYGIFPDNFTYSILVNGIKTNHSNRDELLRAITLLEQIQETGQFKPDEILYNSLIDA 548

Query: 56  CEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPT 115
           C                                   VK  +      L  ++K   + P+
Sbjct: 549 C-----------------------------------VKFNEIQKGMELFREMKNKQIEPS 573

Query: 116 ASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYE 172
           +  Y  ++  Y ++ D+ GA  + +EM+Q  +  +  T+  L+  C   + +   +++ +
Sbjct: 574 SVTYGILIKAYGKQNDLNGAFKIFEEMKQKKIPINDVTYGCLVDACVRNDRLDQALQFID 633

Query: 173 QLKSAGGQITKYVFMALINAYTTCGEFEKA 202
           Q+KS    I   ++  +I  +    + E+A
Sbjct: 634 QMKSQNLPINTVLYTTIIKGFCKLNQTEEA 663


>gi|71027557|ref|XP_763422.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68350375|gb|EAN31139.1| hypothetical protein TP03_0402 [Theileria parva]
          Length = 596

 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 59/288 (20%), Positives = 134/288 (46%), Gaps = 17/288 (5%)

Query: 7   ITPSSASY-KKLITYSC------DLLKVHVALDVVEQMVQ-GELVPSTETINSILHACEE 58
           +TPS+++     I Y C      +   V  A+ + E M + G++ P+T    +++    +
Sbjct: 193 VTPSASTVTNNEIVYGCMFDAYVNNNSVDSAMRLFEDMKERGKVKPNTIMYTTLIKGYGQ 252

Query: 59  SYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM 118
           + + +   RI+ ++    ++PN+ T+ S+I    ++ + +SA  LL+++    + P    
Sbjct: 253 NKQLDKAMRIFRLMQQDGVQPNTVTYNSVIDACARVGEMNSATRLLEEMLSSGIEPDLIT 312

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLK 175
           ++ I+ GY  + D+  +  +L  M +  + PD   ++ L+  C     +    K + Q++
Sbjct: 313 FSTIIKGYCVQSDMDKSFQLLSVMYERGIMPDVILYNSLLEGCVKSGLLWLCEKLWSQMQ 372

Query: 176 SAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSR----SEVKSALVSALASHG 231
                 + +    LI  Y   G+ +K  +  L  E+P +      + V + L+SA  ++G
Sbjct: 373 EYNIPPSNFTLTILIKMYGRSGQLDKVFE--LADELPKRYNFSINTHVYTCLMSACITNG 430

Query: 232 RTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279
           + S  + +Y+ +K  G   + +    +I+ L+         Q++ EV+
Sbjct: 431 KYSMVLDIYKYMKINGVKPDAKTFETIIQGLSRGSLFKEAAQVVMEVY 478



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 65/339 (19%), Positives = 135/339 (39%), Gaps = 25/339 (7%)

Query: 102 SLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTF------- 154
           S L   +  +++   + YN I+    + K+ +  L ++ +     + P+ QTF       
Sbjct: 79  SFLTFCERTSILINEACYNVILDSCIKLKNNKRLLRIINKFRVWGLLPNIQTFGIIIKTL 138

Query: 155 --SYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV---VLDA 209
             S LIH+C  EE   +Y     + G         ++     T G      QV   V  +
Sbjct: 139 SSSNLIHDC--EELFYQYINSNGTNGVNGVNGANGSVTGGTVTSGTVTGGNQVSNPVTPS 196

Query: 210 EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGE 267
              V +   V   +  A  ++     A+ ++E++KE G  ++P  ++   LI+      +
Sbjct: 197 ASTVTNNEIVYGCMFDAYVNNNSVDSAMRLFEDMKERG-KVKPNTIMYTTLIKGYGQNKQ 255

Query: 268 LNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYH 325
           L++ +++   +       +      +I  C R  +++SAT LL+++     + ++     
Sbjct: 256 LDKAMRIFRLMQQDGVQPNTVTYNSVIDACARVGEMNSATRLLEEMLSSGIEPDLITFST 315

Query: 326 FSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWK 385
             + +C        D+     LL  +  E G+ P     + LL  CV +  L     +W 
Sbjct: 316 IIKGYCV-----QSDMDKSFQLLSVMY-ERGIMPDVILYNSLLEGCVKSGLLWLCEKLWS 369

Query: 386 EYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424
           + +   +P +  +   + K +  SG      +L  ++PK
Sbjct: 370 QMQEYNIPPSNFTLTILIKMYGRSGQLDKVFELADELPK 408


>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
          Length = 484

 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/247 (17%), Positives = 108/247 (43%), Gaps = 4/247 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  ++  L++  C    ++ A  +   M +  + P   T  + +    ++       
Sbjct: 145 VQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAM 204

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +C   L PN+    ++I  + K  D  +   L  ++    +      YNA++ G+
Sbjct: 205 EMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGF 264

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITK 183
            R +D++ A  +++EM +  +KPD  T++ LI  C  E ++   ++  +++   G  +  
Sbjct: 265 CRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDD 324

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             + ALI+  +  G    A +++ +  E  ++  +   + ++ A   +G         +E
Sbjct: 325 VTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKE 384

Query: 243 IKEAGCN 249
           ++  G N
Sbjct: 385 MQNKGKN 391



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/384 (19%), Positives = 146/384 (38%), Gaps = 49/384 (12%)

Query: 43  VPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYS 102
           +P+   + + L +  E+Y F      Y  +    + P +  F  ++   ++     SA +
Sbjct: 82  MPAWSDLMNRLPSVPEAYAF------YLHLLDAGVPPEARQFNMLMRDMIRSGKLASARN 135

Query: 103 LLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-C 161
           + D++    + PT   +N +M+G  +  D+  A  +   M +A + PD  T+   I   C
Sbjct: 136 VFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLC 195

Query: 162 SNE--EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSE 218
                +D ++ +E++   G      V   LI+A+   G+     ++  + A   VK+   
Sbjct: 196 KTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLV 255

Query: 219 VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
             +ALV+          A  + EE+++ G   +      LI+    EGEL+  +++ +E+
Sbjct: 256 AYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEM 315

Query: 279 HDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDP 338
            D    +D     + +      LS A                        I C++     
Sbjct: 316 SDEGVALDD----VTYTALISGLSKA----------------GRSVDAERILCEMM---- 351

Query: 339 PDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLS 398
                          E GL P       ++ A     D+K      KE +N G    +++
Sbjct: 352 ---------------EAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVT 396

Query: 399 YLWMYKAFLASGNRKSASKLLSKM 422
           Y  +   F + G  K+A  LL+ M
Sbjct: 397 YNVVMNGFCSLGQMKNADMLLNAM 420



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 89/218 (40%), Gaps = 39/218 (17%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL-------- 64
           +Y  L+   C +  +  A D+VE+M +  L P   T  +++  C +  E +         
Sbjct: 256 AYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEM 315

Query: 65  ---------------------------VRRIYPMICHHNLKPNSETFRSMISLNVKIKDF 97
                                        RI   +    L+P++ T+  +I    K  D 
Sbjct: 316 SDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDV 375

Query: 98  DSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYL 157
            + +  L +++     P    YN +M G+     ++ A M+L  M    V P+  T++ L
Sbjct: 376 KTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNIL 435

Query: 158 IHN-CSNEEDIIKYYEQLKSAGGQITKY-VFMALINAY 193
           +   C + +  ++  E+LKSA G ++ + V+ +LIN +
Sbjct: 436 LDGHCKHGK--VRDTEELKSAKGMVSDFGVYTSLINEF 471


>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 579

 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/286 (20%), Positives = 120/286 (41%), Gaps = 8/286 (2%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M  K  +      Y  +I   C    V  A  +  +M+   + P+  T + ++ A  +  
Sbjct: 137 MLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDR 196

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           +      +  M+    +KPN  T+ +++     +   + A ++ + + +  + P    YN
Sbjct: 197 KGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYN 256

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSA 177
            I+ G  +KK V  A+ + KEM    + PD  T++ LI        I   ++  ++++S 
Sbjct: 257 IIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSI 316

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLDAEIP---VKSRSEVKSALVSALASHGRTS 234
           G  +    + +L++A   C      + + L  EI    ++      + L+  L   GR  
Sbjct: 317 GKTVDIITYNSLLHAL--CKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLE 374

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           DA ++++EI   G ++       +I  L  +G  +  + LL  + D
Sbjct: 375 DAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEALALLSRMED 420



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 1/169 (0%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           MH K +I P   +Y  LI   C L K+  +L++V++M          T NS+LHA  +++
Sbjct: 278 MHWK-KINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNH 336

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
             +    +   I    ++PN  T+ ++I    K    + AY +  ++       T   YN
Sbjct: 337 HLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHITVWTYN 396

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK 169
            ++ G  +K     AL +L  ME     PD+ ++  +I+  S + + +K
Sbjct: 397 VMINGLCKKGLFDEALALLSRMEDNACIPDAVSYETIIYALSEKGETVK 445



 Score = 42.4 bits (98), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 45/218 (20%), Positives = 98/218 (44%), Gaps = 14/218 (6%)

Query: 84  FRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME 143
           F  +++  VKI  + +A SL   L+   + P+      +M  Y     +     +L ++ 
Sbjct: 13  FNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGGITFLFSILTKIL 72

Query: 144 QANVKPDSQTFSYLIHN-CSNEE--DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFE 200
           +   +P+S TF+ LI   C N +  + + +++ + + G ++ +  +  L+N     GE  
Sbjct: 73  KMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAILMNGLCKMGETR 132

Query: 201 KARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC--NLEPRAVI-- 256
            A Q++   +  V +   + S ++ +L      +DA  +Y E+   G   N+   +++  
Sbjct: 133 AAMQML--RKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVD 190

Query: 257 ALIEHLNSEGELNRLIQLLEEVHDPDY-----WMDGCC 289
           AL +    +  +N L  ++++   P+       MDG C
Sbjct: 191 ALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYC 228


>gi|410109899|gb|AFV61029.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           micrantha]
          Length = 431

 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 114/278 (41%), Gaps = 33/278 (11%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYE 61
            K  + PS  SY  L+     L  +     +   M+   + P   T + +++  C+ES +
Sbjct: 169 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKES-K 227

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
            +    ++  +    L PN  TF ++I  + K    D A  +   +   +L+P    YN 
Sbjct: 228 MDGANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNT 287

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQI 181
           ++ G  +K D++ A  ++ EM    +KPD  T++ LI  C  E D+   +E         
Sbjct: 288 LIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEH-------- 339

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
                                R+ ++   I +   +   +AL+S L   GR+ DA  +  
Sbjct: 340 ---------------------RKRMIQENIRLDDVA--YTALISGLCQEGRSVDAEKMLR 376

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279
           E+   G   +      +I     +G++ +  +LL+E+H
Sbjct: 377 EMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMH 414



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 85/215 (39%), Gaps = 10/215 (4%)

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
           F LV   Y  I       +   F  ++    K  D   A S+ D + +  L P+   YN 
Sbjct: 123 FKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNT 182

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAG 178
           +M GY R  D+     +   M  + V+PD  T+S LI+    E  +    + ++++   G
Sbjct: 183 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANELFDEMLVKG 242

Query: 179 GQITKYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTS 234
                  F  LI+ +   G  + A    +Q++  + +P        + L+  L   G   
Sbjct: 243 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLP---DLITYNTLIYGLCKKGDLK 299

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN 269
            A  + +E+   G   +      LI+    EG+L+
Sbjct: 300 QAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLD 334



 Score = 42.4 bits (98), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 52/240 (21%), Positives = 106/240 (44%), Gaps = 23/240 (9%)

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           Y +   H L    +T R ++   +K+K F   +   +++ E     +   +N +M  + +
Sbjct: 95  YRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCK 154

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA----GGQITKY 184
             D++ A  V   + +  ++P   +++ L++      D+ + + +LKSA    G Q   Y
Sbjct: 155 DGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGF-RLKSAMLASGVQPDVY 213

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKS---RSEVKSALVSALASHGRTSDAIIVYE 241
            +  LIN      + + A +  L  E+ VK         + L+     +GR   A+ +Y+
Sbjct: 214 TYSVLINGLCKESKMDGANE--LFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 271

Query: 242 EIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVH----DPDYW-----MDGCCR 290
           ++     +L P  +    LI  L  +G+L +   L++E+      PD +     +DGCC+
Sbjct: 272 QMLSQ--SLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCK 329


>gi|302789998|ref|XP_002976767.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
 gi|300155805|gb|EFJ22436.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
          Length = 669

 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 100/222 (45%), Gaps = 6/222 (2%)

Query: 33  VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92
           +VE+M    + P   T +++++  +   +     + +  +    + P+  T+ S+I +  
Sbjct: 165 LVEEMTGRGIQPDNYTFSTLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDMYG 224

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
           ++   + A  L + LK +N       Y AI   Y R  D Q  + +++EM  +   P++ 
Sbjct: 225 RVGRVNEAVELYEKLKSVNWKLDTVTYGAIANVYARAGDYQSIMQLVQEMRDSGSSPNAV 284

Query: 153 TFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV--VL 207
             + L+   S    +    K + +++++G   T      L+  YT  G +++A +V   L
Sbjct: 285 IMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETL 344

Query: 208 DAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN 249
             E   K    V ++L+ A    GR   A  + +E+K AGCN
Sbjct: 345 KTE-GWKCDVAVYNSLMKACVEGGRVEQAEDILKEMKRAGCN 385



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 86/203 (42%), Gaps = 3/203 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P + ++  LI  +    +   AL   E+M    +VP   T NS++         N   
Sbjct: 174 IQPDNYTFSTLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDMYGRVGRVNEAV 233

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +Y  +   N K ++ T+ ++ ++  +  D+ S   L+ ++++    P A + N +M   
Sbjct: 234 ELYEKLKSVNWKLDTVTYGAIANVYARAGDYQSIMQLVQEMRDSGSSPNAVIMNTLMGTL 293

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITK 183
            +   V  A  V  EM  + V P   T S L+         +   + YE LK+ G +   
Sbjct: 294 SKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETLKTEGWKCDV 353

Query: 184 YVFMALINAYTTCGEFEKARQVV 206
            V+ +L+ A    G  E+A  ++
Sbjct: 354 AVYNSLMKACVEGGRVEQAEDIL 376



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/235 (20%), Positives = 103/235 (43%), Gaps = 41/235 (17%)

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLK 175
           YN ++      + ++ +  +++EM    ++PD+ TFS LI+    C   E+ +K++E++K
Sbjct: 146 YNVMLKILRNGRQLELSEKLVEEMTGRGIQPDNYTFSTLINCAKRCRQPEEALKWFERMK 205

Query: 176 SAG------------------GQITKYV-----------------FMALINAYTTCGEFE 200
           S G                  G++ + V                 + A+ N Y   G+++
Sbjct: 206 SEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLDTVTYGAIANVYARAGDYQ 265

Query: 201 KARQVVLDAEIPVKSRSEV-KSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALI 259
              Q+V +      S + V  + L+  L+  G+ + A  V+ E++ +G +  P  +  L+
Sbjct: 266 SIMQLVQEMRDSGSSPNAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILV 325

Query: 260 EHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQLSSATDLLKQLK 312
           E     G  ++  ++ E +    +  D      L+  CV   ++  A D+LK++K
Sbjct: 326 EMYTRVGAYDQAFEVYETLKTEGWKCDVAVYNSLMKACVEGGRVEQAEDILKEMK 380


>gi|242032375|ref|XP_002463582.1| hypothetical protein SORBIDRAFT_01g002460 [Sorghum bicolor]
 gi|241917436|gb|EER90580.1| hypothetical protein SORBIDRAFT_01g002460 [Sorghum bicolor]
          Length = 610

 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 111/242 (45%), Gaps = 11/242 (4%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           +S S+  +I    +      AL +  +MVQ  +  +   + + L AC E    +  RR++
Sbjct: 227 NSVSWNAMIDGYAENGNASEALALFWRMVQEGVDVTDAAVLAALQACRELGCLDEARRVH 286

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
            ++    LK N     ++I+   K K  D A    +   E+ +  T   +NA++ G+ + 
Sbjct: 287 ELLVRVGLKSNVSVMNALITTYSKCKRADLAAHAFN---ELGIKKTRISWNAMILGFTQN 343

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY-YEQLKSAGGQITK--YVF 186
              + A  +   M+  NVKPDS T   +I   ++  D ++  +    S   Q+ +  YV 
Sbjct: 344 GCSEDAERLFARMQLENVKPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDIYVL 403

Query: 187 MALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKE 245
            ALI+ Y+ CG    AR++   A    + R  +  +A++    SHG    A+ ++EE+K 
Sbjct: 404 TALIDMYSKCGRVTIARKLFDSA----RDRHVITWNAMIHGYGSHGFGQVAVELFEEMKG 459

Query: 246 AG 247
            G
Sbjct: 460 TG 461



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 109/244 (44%), Gaps = 17/244 (6%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P   T  ++L  C    +    R ++  +    L   S    ++ ++  K +    A  +
Sbjct: 57  PVLRTFTALLKLCAARADLATGRAVHAQLTARGLASESLAATALANMYFKCRRPVDARRV 116

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM--EQANVKPDSQTFSYLIHNC 161
            D +   + +     +NA++AGY R      A+  +  M  E+   +PDS T   ++  C
Sbjct: 117 FDRMPARDRVA----WNALVAGYARNGLPALAMEAVVRMQGEEGGEQPDSITLVSVLPAC 172

Query: 162 SNEEDIIKYYE----QLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRS 217
           ++   +    E     L++   ++   V  A+++AY  CG  E AR  V D  +PV++ S
Sbjct: 173 ADARVLGACREVHAFALRAGLDELVN-VSTAVLDAYCKCGAVEAAR-AVFD-WMPVRN-S 228

Query: 218 EVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG---ELNRLIQL 274
              +A++   A +G  S+A+ ++  + + G ++   AV+A ++     G   E  R+ +L
Sbjct: 229 VSWNAMIDGYAENGNASEALALFWRMVQEGVDVTDAAVLAALQACRELGCLDEARRVHEL 288

Query: 275 LEEV 278
           L  V
Sbjct: 289 LVRV 292



 Score = 42.4 bits (98), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 25/106 (23%), Positives = 53/106 (50%), Gaps = 3/106 (2%)

Query: 28  HVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSM 87
            VA+++ E+M     +P+  T  S+L AC  +   +  R+ +  +  + L+P  E + ++
Sbjct: 448 QVAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGRKYFASMKDYGLEPGMEHYGTL 507

Query: 88  ISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
           + L  +    D A+S    ++ M + P  S+Y A++      K+V+
Sbjct: 508 VDLLGRAGKVDEAWSF---IQNMPIEPGISVYGAMLGACKLHKNVE 550



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 38/190 (20%), Positives = 83/190 (43%), Gaps = 9/190 (4%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P + T+ S++ A  +  +    R I+     H L  +     ++I +  K      A  L
Sbjct: 363 PDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDIYVLTALIDMYSKCGRVTIARKL 422

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163
            D  ++ +++     +NA++ GY      Q A+ + +EM+     P+  TF  ++  CS+
Sbjct: 423 FDSARDRHVI----TWNAMIHGYGSHGFGQVAVELFEEMKGTGSLPNETTFLSVLAACSH 478

Query: 164 E---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK 220
               ++  KY+  +K  G +     +  L++     G+ ++A   + +  +P++    V 
Sbjct: 479 AGLVDEGRKYFASMKDYGLEPGMEHYGTLVDLLGRAGKVDEAWSFIQN--MPIEPGISVY 536

Query: 221 SALVSALASH 230
            A++ A   H
Sbjct: 537 GAMLGACKLH 546


>gi|297794571|ref|XP_002865170.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311005|gb|EFH41429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 468

 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 58/283 (20%), Positives = 122/283 (43%), Gaps = 11/283 (3%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L + P   +Y  LI      + +  A  V  +M +  + P   T NS++    ++   N
Sbjct: 41  RLGVLPDVITYNTLIKGYSRFIGIDEAYAVTRRMREAGIEPDVATYNSLISGAAKNLMLN 100

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLL-DDLKEMNLMPTASMYNAI 122
            V +++  + H  L P+  ++ +++S   ++     A+ +L +D++   L+P    YN +
Sbjct: 101 RVLQLFDEMLHSGLSPDMWSYNTLMSCYFRLGKHGEAFRILHEDIRLAGLVPGVDTYNIL 160

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY---YEQLKSAGG 179
           +    +      A+ + K + ++ VKP+  T++ LI+       +        +L+ AG 
Sbjct: 161 LDALCKSGHTDNAIELFKHL-KSRVKPELMTYNILINGLCKSRRVGSVNWMLRELRKAGY 219

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKS-RSEVKSALVSALASHGRTSDAII 238
                 +  ++  Y      EK  ++ L  +    +       A+VSAL   GR  +A  
Sbjct: 220 TPNAVTYTTMLKMYFKTKRIEKGLELFLKMKKEGYTFDGYANCAVVSALIKTGRAEEAYG 279

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLN---SEGELNRLIQLLEEV 278
              E+  +G     + +++    LN    +G L+ +  LLEE+
Sbjct: 280 CMNELVRSGT--RSQDIVSYNTLLNMYFKDGNLDAVDDLLEEI 320



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 78/160 (48%), Gaps = 11/160 (6%)

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
           K ++ + A +LL D   + ++P    YN ++ GY R   +  A  V + M +A ++PD  
Sbjct: 25  KFRNLEKAETLLIDGIRLGVLPDVITYNTLIKGYSRFIGIDEAYAVTRRMREAGIEPDVA 84

Query: 153 TFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV--- 206
           T++ LI   +       +++ ++++  +G     + +  L++ Y   G+  +A +++   
Sbjct: 85  TYNSLISGAAKNLMLNRVLQLFDEMLHSGLSPDMWSYNTLMSCYFRLGKHGEAFRILHED 144

Query: 207 --LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
             L   +P     +  + L+ AL   G T +AI +++ +K
Sbjct: 145 IRLAGLVP---GVDTYNILLDALCKSGHTDNAIELFKHLK 181


>gi|15240649|ref|NP_199839.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170477|sp|Q9FGR7.1|PP426_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g50280, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 1006; Flags: Precursor
 gi|9759030|dbj|BAB09399.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008538|gb|AED95921.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 723

 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 4/181 (2%)

Query: 4   KLEITPSSASYKKLI-TYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           K+ + PSS SY  LI  YS        A    E+M +  + PS ET  S+L A   S + 
Sbjct: 478 KVGLKPSSHSYTALIHAYSVSGWH-EKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDT 536

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
             +  I+ ++    +K    T+ +++    K   +  A  ++ +  +M L P+   YN +
Sbjct: 537 GKLMEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFSKMGLQPSVMTYNML 596

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK--YYEQLKSAGGQ 180
           M  Y R         +LKEM   N+KPDS T+S +I+      D  +  +Y ++    GQ
Sbjct: 597 MNAYARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAFVRVRDFKRAFFYHKMMVKSGQ 656

Query: 181 I 181
           +
Sbjct: 657 V 657



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/131 (22%), Positives = 65/131 (49%), Gaps = 4/131 (3%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
            ++ N+  + +++    K    +    L  ++++  L P+A+ YN +M  Y R+      
Sbjct: 374 GIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIV 433

Query: 136 LMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI----IKYYEQLKSAGGQITKYVFMALIN 191
             +L+EME   ++P+ ++++ LI      + +       + ++K  G + + + + ALI+
Sbjct: 434 ETLLREMEDLGLEPNVKSYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIH 493

Query: 192 AYTTCGEFEKA 202
           AY+  G  EKA
Sbjct: 494 AYSVSGWHEKA 504



 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 76/160 (47%), Gaps = 11/160 (6%)

Query: 103 LLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC- 161
           LL +L +        +YNA ++G    +    A  V + M++ NV PD+ T + LI    
Sbjct: 260 LLSNLPDKEEFRDVRLYNAAISGLSASQRYDDAWEVYEAMDKINVYPDNVTCAILITTLR 319

Query: 162 ---SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEI---PVKS 215
               + +++ + +E++   G + ++ VF  L+ ++  C E  K   +V+  E+    ++S
Sbjct: 320 KAGRSAKEVWEIFEKMSEKGVKWSQDVFGGLVKSF--CDEGLKEEALVIQTEMEKKGIRS 377

Query: 216 RSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255
            + V + L+ A        +   ++ E+++ G  L+P A 
Sbjct: 378 NTIVYNTLMDAYNKSNHIEEVEGLFTEMRDKG--LKPSAA 415



 Score = 39.3 bits (90), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 47/257 (18%), Positives = 108/257 (42%), Gaps = 18/257 (7%)

Query: 30  ALDVVEQMVQGELVPSTET----INSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           A +V E M +  + P   T    I ++  A   + E   V  I+  +    +K + + F 
Sbjct: 292 AWEVYEAMDKINVYPDNVTCAILITTLRKAGRSAKE---VWEIFEKMSEKGVKWSQDVFG 348

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
            ++         + A  +  ++++  +     +YN +M  Y +   ++    +  EM   
Sbjct: 349 GLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRDK 408

Query: 146 NVKPDSQTFSYLIHNCSN--EEDIIK-YYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
            +KP + T++ L+   +   + DI++    +++  G +     +  LI+AY   G  +K 
Sbjct: 409 GLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAY---GRTKKM 465

Query: 203 RQVVLDA-----EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIA 257
             +  DA     ++ +K  S   +AL+ A +  G    A   +EE+ + G         +
Sbjct: 466 SDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTS 525

Query: 258 LIEHLNSEGELNRLIQL 274
           +++     G+  +L+++
Sbjct: 526 VLDAFRRSGDTGKLMEI 542


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 66/315 (20%), Positives = 136/315 (43%), Gaps = 7/315 (2%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  I P +A Y  +I   CD  +V  AL     M Q    PS  T   ++ A  +S   +
Sbjct: 61  KRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDM-QRHCAPSVITYTILVDALCKSARIS 119

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               I   +      PN  T+ ++I+   K+ + D A  L + + E +  P    YN ++
Sbjct: 120 DASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILI 179

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY---EQLKSAGGQ 180
            GY +++  Q    +L+EM +   +P+  T++ L+ +       I  +   + +     +
Sbjct: 180 DGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCK 239

Query: 181 ITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
            + + F  +I+ +   G+ + A ++  L  +          + ++S      R  DA  +
Sbjct: 240 PSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQL 299

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD--GCCRLILHCVR 297
            E + EAGC  +     +++  L    +++   ++ E + +  Y++D   C  LI    +
Sbjct: 300 LERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCK 359

Query: 298 FKQLSSATDLLKQLK 312
            ++L  A  LL++++
Sbjct: 360 SRRLDDAEKLLREME 374



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/245 (20%), Positives = 106/245 (43%), Gaps = 4/245 (1%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           +P   +Y  LI   C   +      ++++MV+    P+  T N+++ +  +S ++     
Sbjct: 169 SPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFN 228

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +  M+   + KP+  TF  MI +  K+   D AY L   + +   +P    YN +++G  
Sbjct: 229 LAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGAC 288

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKY 184
           R   +  A  +L+ M +A   PD  T++ ++      S  ++  + YE L++ G  +   
Sbjct: 289 RANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVV 348

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEI 243
               LI+        + A +++ + E    +   V  + L+       +   ++  + E+
Sbjct: 349 TCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEM 408

Query: 244 KEAGC 248
            + GC
Sbjct: 409 LDKGC 413



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 79/361 (21%), Positives = 151/361 (41%), Gaps = 29/361 (8%)

Query: 79  PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMV 138
           P+S T+ ++I+   K +DF  AY LLD++++  ++P  ++YN I+ G      V  AL+ 
Sbjct: 31  PDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVH 90

Query: 139 LKEMEQANVKPDSQTFSYLIHN-CSNEE--DIIKYYEQLKSAGGQITKYVFMALINAYTT 195
            ++M Q +  P   T++ L+   C +    D     E +  AG       +  LIN +  
Sbjct: 91  YRDM-QRHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCK 149

Query: 196 CGEFEKARQVVLDAEIPVKSRSE---VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP 252
            G  ++A  VVL  ++   S S      + L+       R  D   + +E+ + GC  EP
Sbjct: 150 LGNMDEA--VVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGC--EP 205

Query: 253 RAVI--ALIEHLNSEGE----LNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATD 306
             +    L++ L   G+     N    +L     P ++      +I    +  QL  A +
Sbjct: 206 NFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFN--LMIDMFCKVGQLDLAYE 263

Query: 307 LLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIK--DELGLPPSRKCL 364
           L + + D+    ++   Y ++ +       +  D     D  Q ++   E G PP     
Sbjct: 264 LFQLMTDRGCLPDI---YTYNIMISGACRANRID-----DARQLLERMTEAGCPPDVVTY 315

Query: 365 DFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424
           + ++     A  +  A+ +++   N G   +V++   +      S     A KLL +M +
Sbjct: 316 NSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMER 375

Query: 425 D 425
           +
Sbjct: 376 N 376



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 126/320 (39%), Gaps = 46/320 (14%)

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY---EQLKS 176
           N +++ + RKK  Q A  + K        PDS T+S LI+      D  + Y   ++++ 
Sbjct: 2   NCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 61

Query: 177 AGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDA 236
            G      V+  +I      G  + A     D +          + LV AL    R SDA
Sbjct: 62  RGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRHCAPSVITYTILVDALCKSARISDA 121

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLI----QLLEEVHDPDYW-----MDG 287
            ++ E++ EAGC         LI      G ++  +    Q+LE    PD +     +DG
Sbjct: 122 SLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDG 181

Query: 288 CC---------RLILHCVR------FKQLSSATD-LLKQLK--DKFKDDEMAMEY----- 324
            C         +L+   V+      F   ++  D L+K  K  D F   +M +       
Sbjct: 182 YCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPS 241

Query: 325 HFS-----EIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKR 379
           HF+     ++FC++   D     +  +L Q + D   LP        + GAC  A  +  
Sbjct: 242 HFTFNLMIDMFCKVGQLD-----LAYELFQLMTDRGCLPDIYTYNIMISGAC-RANRIDD 295

Query: 380 AHLIWKEYENAGLPYNVLSY 399
           A  + +    AG P +V++Y
Sbjct: 296 ARQLLERMTEAGCPPDVVTY 315



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/160 (19%), Positives = 69/160 (43%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M  + +  PS  ++  +I   C + ++ +A ++ + M     +P   T N ++     + 
Sbjct: 232 MMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRAN 291

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
             +  R++   +      P+  T+ S++S   K    D AY + + L+           +
Sbjct: 292 RIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCS 351

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160
            ++ G  + + +  A  +L+EME+    PD   ++ LIH 
Sbjct: 352 TLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHG 391



 Score = 42.4 bits (98), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 30/150 (20%), Positives = 64/150 (42%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  +I+ +C   ++  A  ++E+M +    P   T NSI+    ++ + +    +
Sbjct: 275 PDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEV 334

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           Y ++ +     +  T  ++I    K +  D A  LL +++     P    Y  ++ G+ +
Sbjct: 335 YEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCK 394

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
              +  +L    EM      P   T+S +I
Sbjct: 395 ADQLDKSLAFFSEMLDKGCVPTVITYSIVI 424


>gi|297744686|emb|CBI37948.3| unnamed protein product [Vitis vinifera]
          Length = 1550

 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 9/210 (4%)

Query: 6    EITPSSASYKKLITYSCDLLKVHVALDVVEQMV--QGELVPSTETINSILHACEESYEFN 63
            ++ P    +  LIT       V  A DV+ +M      + P   T+ +++ AC  + + +
Sbjct: 1027 KVEPDRVVFNALITACGQSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACTNAGQVD 1086

Query: 64   LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              R +Y MI  +N+K   E +   +S + +I D++ AYS+  D+    ++P     +A++
Sbjct: 1087 RAREVYKMIDQYNIKGTPEVYTIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEMFLSALI 1146

Query: 124  --AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKYYEQLKSAG 178
              AG+  K D   A  V++E     +     ++S L+  CSN ++    ++ Y  +KS  
Sbjct: 1147 DVAGHAGKLDA--AFEVIQEARIQGIPLGIVSYSSLMGACSNAKNWQKALELYVDIKSMK 1204

Query: 179  GQITKYVFMALINAYTTCGEFEKARQVVLD 208
               T     ALI A     + EKA +V+ D
Sbjct: 1205 LNPTVSTMNALITALCEGEQLEKAMEVLSD 1234



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 103/244 (42%), Gaps = 8/244 (3%)

Query: 43   VPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYS 102
             P+  T N ++  C  S +     ++  ++    LK + + + ++IS   K    D+ + 
Sbjct: 924  TPTLSTFNMLMSVCATSQDSAGAFQVLQLVREAGLKADCKLYTTLISTCAKSGKVDAMFE 983

Query: 103  LLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS 162
            +  ++    + P    Y A++ G  R   V  A      M    V+PD   F+ LI  C 
Sbjct: 984  VFHEMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVEPDRVVFNALITACG 1043

Query: 163  NEEDIIKYYEQLKSAGGQITK-----YVFMALINAYTTCGEFEKARQV--VLDAEIPVKS 215
                + + ++ L     +            ALI A T  G+ ++AR+V  ++D +  +K 
Sbjct: 1044 QSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACTNAGQVDRAREVYKMID-QYNIKG 1102

Query: 216  RSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLL 275
              EV +  VS+ +  G    A  VY ++   G   +   + ALI+     G+L+   +++
Sbjct: 1103 TPEVYTIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEMFLSALIDVAGHAGKLDAAFEVI 1162

Query: 276  EEVH 279
            +E  
Sbjct: 1163 QEAR 1166



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/260 (19%), Positives = 112/260 (43%), Gaps = 7/260 (2%)

Query: 3    AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
            AKL  TP+ +++  L++          A  V++ + +  L    +   +++  C +S + 
Sbjct: 919  AKLIPTPTLSTFNMLMSVCATSQDSAGAFQVLQLVREAGLKADCKLYTTLISTCAKSGKV 978

Query: 63   NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
            + +  ++  + +  ++PN  T+ ++I    +      A+     ++   + P   ++NA+
Sbjct: 979  DAMFEVFHEMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVEPDRVVFNAL 1038

Query: 123  MAGYFRKKDVQGALMVLKEM--EQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSA 177
            +    +   V  A  VL EM  E   + PD  T   LI  C+N   + +    Y+ +   
Sbjct: 1039 ITACGQSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACTNAGQVDRAREVYKMIDQY 1098

Query: 178  GGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAI 237
              + T  V+   +++++  G++E A  V  D         E+  + +  +A H    DA 
Sbjct: 1099 NIKGTPEVYTIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEMFLSALIDVAGHAGKLDA- 1157

Query: 238  IVYEEIKEAGCNLEPRAVIA 257
              +E I+EA     P  +++
Sbjct: 1158 -AFEVIQEARIQGIPLGIVS 1176



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/271 (20%), Positives = 113/271 (41%), Gaps = 6/271 (2%)

Query: 14   YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
            Y  LI+      KV    +V  +MV  E+ P+  T  +++  C  + +       Y ++ 
Sbjct: 965  YTTLISTCAKSGKVDAMFEVFHEMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMR 1024

Query: 74   HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMN--LMPTASMYNAIMAGYFRKKD 131
               ++P+   F ++I+   +    D A+ +L +++     + P      A++        
Sbjct: 1025 SKKVEPDRVVFNALITACGQSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACTNAGQ 1084

Query: 132  VQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKYYEQLKSAGGQITKYVFMA 188
            V  A  V K ++Q N+K   + ++  + + S   D       Y  +   G    +    A
Sbjct: 1085 VDRAREVYKMIDQYNIKGTPEVYTIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEMFLSA 1144

Query: 189  LINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAG 247
            LI+     G+ + A +V+ +A I       V  S+L+ A ++      A+ +Y +IK   
Sbjct: 1145 LIDVAGHAGKLDAAFEVIQEARIQGIPLGIVSYSSLMGACSNAKNWQKALELYVDIKSMK 1204

Query: 248  CNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
             N     + ALI  L    +L + +++L ++
Sbjct: 1205 LNPTVSTMNALITALCEGEQLEKAMEVLSDM 1235



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 65/146 (44%), Gaps = 4/146 (2%)

Query: 7    ITPSSASYKKLITYSCDLLKVHVALDVV-EQMVQGELVP-STETINSILHACEESYEFNL 64
            + P       LI  +    K+  A +V+ E  +QG  +P    + +S++ AC  +  +  
Sbjct: 1135 VVPDEMFLSALIDVAGHAGKLDAAFEVIQEARIQG--IPLGIVSYSSLMGACSNAKNWQK 1192

Query: 65   VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
               +Y  I    L P   T  ++I+   + +  + A  +L D+K   L P    Y+ ++ 
Sbjct: 1193 ALELYVDIKSMKLNPTVSTMNALITALCEGEQLEKAMEVLSDMKRAGLCPNTITYSILLV 1252

Query: 125  GYFRKKDVQGALMVLKEMEQANVKPD 150
               +K D+   LM+L +  + +V P+
Sbjct: 1253 ASEKKDDIDVGLMILSQARKDSVAPN 1278



 Score = 45.4 bits (106), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 47/85 (55%)

Query: 83   TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM 142
            ++ S++      K++  A  L  D+K M L PT S  NA++      + ++ A+ VL +M
Sbjct: 1176 SYSSLMGACSNAKNWQKALELYVDIKSMKLNPTVSTMNALITALCEGEQLEKAMEVLSDM 1235

Query: 143  EQANVKPDSQTFSYLIHNCSNEEDI 167
            ++A + P++ T+S L+     ++DI
Sbjct: 1236 KRAGLCPNTITYSILLVASEKKDDI 1260


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 112/243 (46%), Gaps = 16/243 (6%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+S S+  ++           AL    +MV   L P        +  C  S +    + +
Sbjct: 21  PNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIGVCSSSKDLKQGQLL 80

Query: 69  YPMICHHNL-KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           + MI    L + +     ++I++  + +D + A    D++ +  L+     +NA++AGY 
Sbjct: 81  HAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVT----WNALIAGYS 136

Query: 128 RKKDVQGALMVLKEM---EQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQI 181
           R  D +GAL + ++M       +KPD+ TFS  ++ CS   DI +  E   +  ++G   
Sbjct: 137 RNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEARTVASGYAS 196

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVY 240
              V  ALIN Y+ CG  E AR+V       +K+R  +  + ++S  A  G  + A+ ++
Sbjct: 197 DSIVQNALINMYSKCGSLESARKVF----DRLKNRDVIAWNTMISGYAKQGAATQALELF 252

Query: 241 EEI 243
           + +
Sbjct: 253 QRM 255



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 106/218 (48%), Gaps = 14/218 (6%)

Query: 32  DVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLN 91
           D+V +  +G + P   T +S L+AC    + +  R I           +S    ++I++ 
Sbjct: 150 DMVSKSPEG-MKPDAITFSSALYACSVVGDISQGREIEARTVASGYASDSIVQNALINMY 208

Query: 92  VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151
            K    +SA  + D LK  +++     +N +++GY ++     AL + + M   + KP+ 
Sbjct: 209 SKCGSLESARKVFDRLKNRDVIA----WNTMISGYAKQGAATQALELFQRMGPNDPKPNV 264

Query: 152 QTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTC-GEFEKARQVVL 207
            TF  L+  C+N ED+ +    + ++K  G +    +   L+N YT C    E+ARQV  
Sbjct: 265 VTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFE 324

Query: 208 DAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIK 244
                +++R  +  + L+ A   +G+  DA+ ++++++
Sbjct: 325 ----RLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQ 358



 Score = 38.9 bits (89), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 39/220 (17%), Positives = 92/220 (41%), Gaps = 10/220 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           ALD+ +QM    + P+  T++++L AC         + ++ +I     K +     S+++
Sbjct: 350 ALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMN 409

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  +    D    +   +++ +L+     ++ ++A Y +    +  L    E+ Q  +  
Sbjct: 410 MYNRCGSLDDTVGVFAAIRDKSLVS----WSTLIAAYAQHGHSRTGLEHFWELLQEGLAA 465

Query: 150 DSQTFSYLIHNCSN----EEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           D  T    +  CS+    +E +  +   +   G       F+ +++  +  G  E A  +
Sbjct: 466 DDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENL 525

Query: 206 VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
           + D  +P    +   ++L+S    H  T  A  V +++ E
Sbjct: 526 IHD--MPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFE 563


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 126/290 (43%), Gaps = 16/290 (5%)

Query: 8    TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
            TP   +Y   +       K+    D+ E+M+     P+T T N ++    +S   +    
Sbjct: 820  TPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAID 879

Query: 68   IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
            +Y  +   +  P   T+  +I   +K+   + A    +++ +   MP   +YN +M G+ 
Sbjct: 880  LYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFG 939

Query: 128  RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC----SNEEDIIKYYEQLKSAGGQITK 183
            ++ DV+ A  + + M +  ++PD +++S ++ +C       +D + Y+E+LK +G     
Sbjct: 940  KQGDVETACELFRRMVKEGIRPDLKSYSIMV-DCLCMVGKVDDALHYFEELKLSGLDPDL 998

Query: 184  YVFMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
              +  +IN        E+A  +  +     +       +AL+  L   G   +A  +YEE
Sbjct: 999  VCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEE 1058

Query: 243  IKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCR 290
            ++  G  LEP      ALI   +  G  +R   + +++      M G CR
Sbjct: 1059 LQLKG--LEPNVFTYNALIRGHSMSGNPDRAYAVYKKM------MVGGCR 1100



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 91/203 (44%), Gaps = 3/203 (1%)

Query: 6    EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
            + +P+  +Y  LI     L ++  A    E+M+    +P+    N +++   +  +    
Sbjct: 888  DFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETA 947

Query: 66   RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
              ++  +    ++P+ +++  M+     +   D A    ++LK   L P    YN ++ G
Sbjct: 948  CELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMING 1007

Query: 126  YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQIT 182
              R + V+ AL +  EM    + PD  T++ LI N       E+  K YE+L+  G +  
Sbjct: 1008 LGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPN 1067

Query: 183  KYVFMALINAYTTCGEFEKARQV 205
             + + ALI  ++  G  ++A  V
Sbjct: 1068 VFTYNALIRGHSMSGNPDRAYAV 1090



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/258 (22%), Positives = 110/258 (42%), Gaps = 4/258 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  LI   C+  K++ A ++  +M      P   T  ++L    +  + + ++  
Sbjct: 295 PDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEF 354

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +      P+  TF  +I    K+   D A+  LD +K+  + P    YN ++ G  R
Sbjct: 355 WSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLR 414

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLI--HNCSNEED-IIKYYEQLKSAGGQITKYV 185
              +  AL +   ME   ++  + T+   I  +  S E    IK +E++K+ G       
Sbjct: 415 LNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVA 474

Query: 186 FMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
             A + +    G  E+A++      +  +   +   + L+      GR  DAI +  E++
Sbjct: 475 CNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEME 534

Query: 245 EAGCNLEPRAVIALIEHL 262
           E GC+ E   + +LI+ L
Sbjct: 535 ENGCDPEVVIINSLIDTL 552



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/253 (20%), Positives = 107/253 (42%), Gaps = 4/253 (1%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL V  +MV   + PS +T ++++ A  +  +   V  +   +    L+PN  TF   I 
Sbjct: 211 ALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIR 270

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  +    D AY +L  + +    P    Y  ++        +  A  +  +M+ ++ KP
Sbjct: 271 ILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKP 330

Query: 150 DSQTFSYLIHNCSNEED---IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D  T+  L+   S+  D   I +++ ++++ G       F  LI+A    G+ ++A   +
Sbjct: 331 DRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTL 390

Query: 207 -LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
            +  +  V       + L+  L    R  +A+ ++  ++  G        I  I++    
Sbjct: 391 DVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKS 450

Query: 266 GELNRLIQLLEEV 278
           GE  + I+  E++
Sbjct: 451 GESGKAIKTFEKM 463



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/270 (19%), Positives = 115/270 (42%), Gaps = 15/270 (5%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           K+  A  ++++M      P   T   ++ A   + + N  + ++  +   + KP+  T+ 
Sbjct: 277 KIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYI 336

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           +++       D D+      +++    +P    +  ++    +   V  A   L  M++ 
Sbjct: 337 TLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQ 396

Query: 146 NVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
            V P+  T++ LI      +  ++ ++ +  ++S G + T Y ++  I+ Y   GE  KA
Sbjct: 397 GVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKA 456

Query: 203 RQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--AL 258
            +    +     V +     ++L S LA  GR  +A   +  +K+  C L P A+    L
Sbjct: 457 IKTFEKMKTNGIVPNIVACNASLYS-LAEQGRLEEAKEFFNGLKK--CGLAPDAITYNIL 513

Query: 259 IEHLNSEGELNRLIQLLEEVHDPDYWMDGC 288
           +      G ++  I+LL E+ +     +GC
Sbjct: 514 MRCYGKAGRVDDAIKLLSEMEE-----NGC 538



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/230 (20%), Positives = 94/230 (40%), Gaps = 10/230 (4%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           +V  A  + ++M + +L P+  T N++L    +         ++  +   +  PN+ +F 
Sbjct: 557 RVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFN 616

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           +++    K  + D A  +L  + EMN  P    YN ++ G  ++  V  A  +  +M++ 
Sbjct: 617 TLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKENRVNYAFWLFHQMKKV 676

Query: 146 NVKPDSQTFSYLIHNCSNEEDIIKYY----EQLKSAGGQITKYVFMALINAYTTCGEFEK 201
            + PD  T   L+     +  I   +    E +   G       +  L+       E E 
Sbjct: 677 -IYPDYVTLCTLLPGVIKDGRIEDAFRVAKEFVHHVGDHADGSFWEDLMGGILI--EAEI 733

Query: 202 ARQVVLDAEIPVKSRSEVKSA---LVSALASHGRTSDAIIVYEEIKEAGC 248
            + ++    +   +  E  S    LV  L  HG+  DA  V+ ++ ++ C
Sbjct: 734 GQSILFAESLVCNTICEDDSVLIPLVKFLCKHGKAVDAYNVFLKLTKSFC 783



 Score = 46.2 bits (108), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 1/125 (0%)

Query: 42  LVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAY 101
           L P   T N ++    ++   +   ++   +  +   P      S+I    K    D A+
Sbjct: 503 LAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAW 562

Query: 102 SLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN- 160
            +   +KEM L PT   YN ++AG  ++  VQ A  + K M   +  P++ +F+ L+   
Sbjct: 563 KMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCL 622

Query: 161 CSNEE 165
           C N E
Sbjct: 623 CKNGE 627



 Score = 45.1 bits (105), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 2/152 (1%)

Query: 7    ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
            I P   SY  ++   C + KV  AL   E++    L P     N +++    S       
Sbjct: 959  IRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEAL 1018

Query: 67   RIYPMICHHNLKPNSETFRSMISLNVKIKDF-DSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             ++  + +  + P+  T+ ++I LN+ I    + A  + ++L+   L P    YNA++ G
Sbjct: 1019 SLFDEMRNRGITPDLYTYNALI-LNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRG 1077

Query: 126  YFRKKDVQGALMVLKEMEQANVKPDSQTFSYL 157
            +    +   A  V K+M     +P++ TF+ L
Sbjct: 1078 HSMSGNPDRAYAVYKKMMVGGCRPNTGTFAQL 1109



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 69/362 (19%), Positives = 142/362 (39%), Gaps = 16/362 (4%)

Query: 80  NSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVL 139
           N  ++  +I L +K      A  +   +    + P+   Y+A+M    +++D++  + +L
Sbjct: 191 NGYSYIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLL 250

Query: 140 KEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK---SAGGQITKYVFMALINAYTTC 196
           +EME   ++P+  TF+  I        I + Y  LK    AG       +  LI+A    
Sbjct: 251 QEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNA 310

Query: 197 GEFEKARQVVLDAEIPVKSRSEVKS-ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255
           G+   A+++ L  +        V    L+   + HG        + E++  G   +    
Sbjct: 311 GKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTF 370

Query: 256 IALIEHLNSEGELNRLIQLLEEVHDPDYW--MDGCCRLILHCVRFKQLSSATDLLKQLKD 313
             LI+ L   G+++     L+ +        +     LI   +R  +L  A +L   ++ 
Sbjct: 371 TILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMES 430

Query: 314 KFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDEL-GLPPSRKCLDFLLGACV 372
              +        F + + +   +       G  +  F K +  G+ P+    +  L +  
Sbjct: 431 LGLETTAYTYILFIDYYGKSGES-------GKAIKTFEKMKTNGIVPNIVACNASLYSLA 483

Query: 373 NARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKD--DPHVR 430
               L+ A   +   +  GL  + ++Y  + + +  +G    A KLLS+M ++  DP V 
Sbjct: 484 EQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVV 543

Query: 431 FV 432
            +
Sbjct: 544 II 545



 Score = 39.7 bits (91), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 70/391 (17%), Positives = 143/391 (36%), Gaps = 55/391 (14%)

Query: 42  LVPSTETINSILHACEESYEFNLVRRIYPMICHHNL------KPNSETFRSMISLNVKIK 95
           ++ +TET N +L            RR+  M+   NL      K +  T+ ++  +     
Sbjct: 118 VIHTTETCNYVLEMLRAH------RRVEDMVVVFNLMQKQIIKRSINTYLTIFKVLYIRG 171

Query: 96  DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFS 155
               A   L+ ++++  +     Y  ++    +    + AL V + M    +KP  +T+S
Sbjct: 172 GLREAPVALEKMRKVGFVLNGYSYIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYS 231

Query: 156 YLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIP 212
            L+       DI   +   ++++S G +   Y F   I      G+ ++A  ++   +  
Sbjct: 232 ALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDA 291

Query: 213 VKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRL 271
                 V  + L+ AL + G+ ++A  ++ ++K +    +    I L++  +  G+L+ +
Sbjct: 292 GCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAI 351

Query: 272 IQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFC 331
            +   E+    Y  D         V F  L  A                          C
Sbjct: 352 KEFWSEMEADGYLPD--------VVTFTILIDA-------------------------LC 378

Query: 332 QIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAG 391
           ++   D          L  +K + G+ P+    + L+   +    L  A  ++   E+ G
Sbjct: 379 KVGKVDE-----AFGTLDVMKKQ-GVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLG 432

Query: 392 LPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           L     +Y+     +  SG    A K   KM
Sbjct: 433 LETTAYTYILFIDYYGKSGESGKAIKTFEKM 463



 Score = 39.3 bits (90), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 44/271 (16%), Positives = 108/271 (39%), Gaps = 4/271 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   ++  LI   C + KV  A   ++ M +  + P+  T N+++         +    +
Sbjct: 365 PDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALEL 424

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    L+  + T+   I    K  +   A    + +K   ++P     NA +     
Sbjct: 425 FNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAE 484

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYV 185
           +  ++ A      +++  + PD+ T++ L+         +D IK   +++  G      +
Sbjct: 485 QGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVI 544

Query: 186 FMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
             +LI+        ++A ++     E+ +       + L++ L   GR  +A  +++ + 
Sbjct: 545 INSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMI 604

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLL 275
              C     +   L++ L   GE++  +++L
Sbjct: 605 ADDCPPNTISFNTLLDCLCKNGEVDLALKML 635


>gi|242094978|ref|XP_002437979.1| hypothetical protein SORBIDRAFT_10g005810 [Sorghum bicolor]
 gi|241916202|gb|EER89346.1| hypothetical protein SORBIDRAFT_10g005810 [Sorghum bicolor]
          Length = 657

 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 63/313 (20%), Positives = 146/313 (46%), Gaps = 21/313 (6%)

Query: 9   PSSASYKKLIT-YSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           P   +Y  LI+ YS + + V  ++++ +++   +  P++ T+ +++          L R 
Sbjct: 276 PDLVAYNALISGYSVNGM-VESSVELFKELAASDWRPNSSTLVAVIPVYSPFGHELLARC 334

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           ++  +    L  ++    ++ +L  ++ D +SA S+ D + E     T   +NA+++GY 
Sbjct: 335 LHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMPE----KTMESWNAMISGYA 390

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKY 184
           +    + A+ + + M++ NV+P+  T S  +  C+    +      +  +     ++  Y
Sbjct: 391 QNGLTEMAVELFQLMQELNVQPNPTTISSTLSACAQLGALSLGTWVHRIIAKENLELNVY 450

Query: 185 VFMALINAYTTCGEFEKARQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           V  ALI+ Y  CG   +AR +   +D +  V       +A++S    HGR ++A+ +Y+ 
Sbjct: 451 VMTALIDMYAKCGSIAEARSIFDRMDNKNVVS-----WNAMISGYGLHGRGAEALKLYKS 505

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGEL----NRLIQLLEEVHDPDYWMDGCCRLILHCVRF 298
           + +A C L   +    + +  S G L     ++ +++   +     ++ C  ++    R 
Sbjct: 506 MLDA-CILPTSSTFLSVLYACSHGGLVDEGQKVFRVMTNEYRISPGIEHCTCMVDLLGRA 564

Query: 299 KQLSSATDLLKQL 311
            +L+ A DL+ + 
Sbjct: 565 GKLNEALDLISEF 577


>gi|147840993|emb|CAN64120.1| hypothetical protein VITISV_037241 [Vitis vinifera]
          Length = 418

 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 60/276 (21%), Positives = 125/276 (45%), Gaps = 9/276 (3%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVR 66
           TP+  +Y  LI   C   ++  A +V ++M++  + P+  T  +++   C +S      R
Sbjct: 145 TPNVCTYNILINACCLSGRLGDAWNVFDEMLRKHVCPNVVTFGTLISGLCRDSRLDEASR 204

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
               M+   N+KPN+  + S++    ++ +   A+ L  ++    L   + +Y+ ++A  
Sbjct: 205 LKEDMVKVFNVKPNAFVYASLMKGLCRVNELSLAFELKKEMVANKLRLDSGIYSTLIAAL 264

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY---EQLKSAGGQITK 183
           F+        +VL+EM +   KPD+ T++ +I    NE+D    Y   E++   G +   
Sbjct: 265 FKVGRKDEVFVVLEEMRENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEEMVVKGCKPDV 324

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKS-RSEVKS--ALVSALASHGRTSDAIIVY 240
             +  +I+     G++ +A  +  D  +P +    +V S   L   L    + ++A  + 
Sbjct: 325 ISYNVIISGLCKEGKWREANDLFED--MPRRGCTPDVGSYRILFDGLCEGMQFNEAAFIL 382

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276
           +E+   G   +  +    +E L S  EL  ++Q  E
Sbjct: 383 DEMVFKGYAPKSASXTKFVEALCSGRELGVVVQSFE 418



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 114/243 (46%), Gaps = 9/243 (3%)

Query: 43  VPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYS 102
            P+  T N +++AC  S        ++  +   ++ PN  TF ++IS   +    D A  
Sbjct: 145 TPNVCTYNILINACCLSGRLGDAWNVFDEMLRKHVCPNVVTFGTLISGLCRDSRLDEASR 204

Query: 103 LLDDL-KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI--- 158
           L +D+ K  N+ P A +Y ++M G  R  ++  A  + KEM    ++ DS  +S LI   
Sbjct: 205 LKEDMVKVFNVKPNAFVYASLMKGLCRVNELSLAFELKKEMVANKLRLDSGIYSTLIAAL 264

Query: 159 HNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKS-RS 217
                ++++    E+++  G +     + A+I+ +    +FE A  V+   E+ VK  + 
Sbjct: 265 FKVGRKDEVFVVLEEMRENGCKPDTVTYNAMISGFCNEKDFEAAYGVL--EEMVVKGCKP 322

Query: 218 EVKS--ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLL 275
           +V S   ++S L   G+  +A  ++E++   GC  +  +   L + L    + N    +L
Sbjct: 323 DVISYNVIISGLCKEGKWREANDLFEDMPRRGCTPDVGSYRILFDGLCEGMQFNEAAFIL 382

Query: 276 EEV 278
           +E+
Sbjct: 383 DEM 385



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 27/200 (13%)

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
           + + FD   S +D        P    YN ++        +  A  V  EM + +V P+  
Sbjct: 129 EFEKFDGILSGIDKFA----TPNVCTYNILINACCLSGRLGDAWNVFDEMLRKHVCPNVV 184

Query: 153 TFSYLIHN-CSN---------EEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGE---- 198
           TF  LI   C +         +ED++K +    +A      +V+ +L+       E    
Sbjct: 185 TFGTLISGLCRDSRLDEASRLKEDMVKVFNVKPNA------FVYASLMKGLCRVNELSLA 238

Query: 199 FEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
           FE  +++V +    ++  S + S L++AL   GR  +  +V EE++E GC  +     A+
Sbjct: 239 FELKKEMVANK---LRLDSGIYSTLIAALFKVGRKDEVFVVLEEMRENGCKPDTVTYNAM 295

Query: 259 IEHLNSEGELNRLIQLLEEV 278
           I    +E +      +LEE+
Sbjct: 296 ISGFCNEKDFEAAYGVLEEM 315


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 114/256 (44%), Gaps = 16/256 (6%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           +P+  SY  LI   C   KV  A +++ +M+ G   P+  T  S+L    +  +      
Sbjct: 84  SPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVD 143

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           ++  + +    P+   +  +I    K  D   AY L +++ E   +PT   YN++++G+ 
Sbjct: 144 LFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFS 203

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKY 184
           RK +      + K+M +    P+  TF+ L+       D++   + + +++S G      
Sbjct: 204 RKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVV 263

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVS------ALASHGRTSDAII 238
            +  LI    + G+  +A++++ +       RS V   +VS        +  G    AI 
Sbjct: 264 SYNTLIRGMCSKGKPHEAQRLLREM-----IRSGVGPDIVSYNILIDGYSKSGALDHAIK 318

Query: 239 VYEEIKEAGCNLEPRA 254
           ++ EI ++G  LEP A
Sbjct: 319 LFYEIPKSG--LEPDA 332



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 87/203 (42%), Gaps = 3/203 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P    Y  LI        +  A  + E+M++   +P+  T NS+L       EF  V+ +
Sbjct: 155 PDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSL 214

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +      PN  TF +++    K+ D   A+ L  +++ +   P    YN ++ G   
Sbjct: 215 FKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCS 274

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYV 185
           K     A  +L+EM ++ V PD  +++ LI   S    +   IK + ++  +G +   + 
Sbjct: 275 KGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFS 334

Query: 186 FMALINAYTTCGEFEKARQVVLD 208
           +  +I+     G+   A  V  D
Sbjct: 335 YSTIIDCLCRAGKVGAAFVVFKD 357



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/249 (19%), Positives = 110/249 (44%), Gaps = 10/249 (4%)

Query: 37  MVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKD 96
           M+    VP+T T   +L +  ++  F   R ++  +      PN  ++  +I+   + + 
Sbjct: 43  MLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQK 102

Query: 97  FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSY 156
            D A  LL+++ +    P    Y ++++G  +   ++ A+ +   M      PD   ++ 
Sbjct: 103 VDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNV 162

Query: 157 LIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD----A 209
           LI   S + D+    + +E++   G   T + + +L++ ++  GEF + + +  D     
Sbjct: 163 LIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQG 222

Query: 210 EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN 269
            +P        + L+      G   +A  ++ E++  GC  +  +   LI  + S+G+ +
Sbjct: 223 CVP---NIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPH 279

Query: 270 RLIQLLEEV 278
              +LL E+
Sbjct: 280 EAQRLLREM 288


>gi|3128231|gb|AAC26711.1| hypothetical protein [Arabidopsis thaliana]
 gi|20197159|gb|AAM14947.1| hypothetical protein [Arabidopsis thaliana]
          Length = 617

 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 124/266 (46%), Gaps = 15/266 (5%)

Query: 9   PSSASYKKLITYSCDLLKVH-VALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           P+  S+  +I    +    H  AL +  +M    L P   T N +  AC +  E  + R 
Sbjct: 90  PNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRS 149

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           ++  +    L+ +     S+I +  K      A  L D++ E + +     +N++++GY 
Sbjct: 150 VHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVS----WNSMISGYS 205

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI--IKYYEQL---KSAGGQIT 182
                + A+ + ++ME+   +PD +T   ++  CS+  D+   +  E++   K  G  ++
Sbjct: 206 EAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIG--LS 263

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
            ++   LI+ Y  CG+ + AR+V       +K      +A+++  + +G++S+A  ++ E
Sbjct: 264 TFLGSKLISMYGKCGDLDSARRVFNQM---IKKDRVAWTAMITVYSQNGKSSEAFKLFFE 320

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGEL 268
           +++ G + +   +  ++    S G L
Sbjct: 321 MEKTGVSPDAGTLSTVLSACGSVGAL 346



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 108/222 (48%), Gaps = 20/222 (9%)

Query: 63  NLVRRIYP-MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
           N +R+I   M+ H   KPN      +I   V++ DF+ +  L    +E    P    +N 
Sbjct: 47  NQLRQIQAQMLLHSVEKPNF-----LIPKAVELGDFNYSSFLFSVTEE----PNHYSFNY 97

Query: 122 IMAGYFRK-KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSA 177
           ++ G      D + AL + + M+ + +KPD  T++++   C+  E+I      +  L   
Sbjct: 98  MIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKV 157

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDA 236
           G +   ++  +LI  Y  CG+   AR++  +    +  R  V  ++++S  +  G   DA
Sbjct: 158 GLERDVHINHSLIMMYAKCGQVGYARKLFDE----ITERDTVSWNSMISGYSEAGYAKDA 213

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           + ++ +++E G   + R +++++   +  G+L R  +LLEE+
Sbjct: 214 MDLFRKMEEEGFEPDERTLVSMLGACSHLGDL-RTGRLLEEM 254


>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
          Length = 612

 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/247 (17%), Positives = 108/247 (43%), Gaps = 4/247 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  ++  L++  C    ++ A  +   M +  + P   T  + +    ++       
Sbjct: 273 VQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAM 332

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            ++  +C   L PN+    ++I  + K  D  +   L  ++    +      YNA++ G+
Sbjct: 333 EMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGF 392

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITK 183
            R +D++ A  +++EM +  +KPD  T++ LI  C  E ++   ++  +++   G  +  
Sbjct: 393 CRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDD 452

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             + ALI+  +  G    A +++ +  E  ++  +   + ++ A   +G         +E
Sbjct: 453 VTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKE 512

Query: 243 IKEAGCN 249
           ++  G N
Sbjct: 513 MQNKGKN 519



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/384 (20%), Positives = 149/384 (38%), Gaps = 49/384 (12%)

Query: 43  VPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYS 102
           +P+   + + L +  E+Y F      Y  +    + P +  F  ++   ++     SA +
Sbjct: 210 MPAWSDLMNRLPSVPEAYAF------YLHLLDAGVPPEARQFNMLMRDMIRSGKLASARN 263

Query: 103 LLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-C 161
           + D++    + PT   +N +M+G  +  D+  A  +   M +A + PD  T+   I   C
Sbjct: 264 VFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLC 323

Query: 162 SNE--EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSE 218
                +D ++ +E++   G      V   LI+A+   G+     ++  + A   VK+   
Sbjct: 324 KTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLV 383

Query: 219 VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
             +ALV+          A  + EE+++ G   +      LI+    EGEL+  +++ +E+
Sbjct: 384 AYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEM 443

Query: 279 HDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDP 338
            D    +D     + +      LS A         +  D E         I C++     
Sbjct: 444 SDEGVALDD----VTYTALISGLSKA--------GRSVDAE--------RILCEMM---- 479

Query: 339 PDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLS 398
                          E GL P       ++ A     D+K      KE +N G    +++
Sbjct: 480 ---------------EAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVT 524

Query: 399 YLWMYKAFLASGNRKSASKLLSKM 422
           Y  +   F + G  K+A  LL+ M
Sbjct: 525 YNVVMNGFCSLGQMKNADMLLNAM 548



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 89/218 (40%), Gaps = 39/218 (17%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL-------- 64
           +Y  L+   C +  +  A D+VE+M +  L P   T  +++  C +  E +         
Sbjct: 384 AYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEM 443

Query: 65  ---------------------------VRRIYPMICHHNLKPNSETFRSMISLNVKIKDF 97
                                        RI   +    L+P++ T+  +I    K  D 
Sbjct: 444 SDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDV 503

Query: 98  DSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYL 157
            + +  L +++     P    YN +M G+     ++ A M+L  M    V P+  T++ L
Sbjct: 504 KTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNIL 563

Query: 158 IHN-CSNEEDIIKYYEQLKSAGGQITKY-VFMALINAY 193
           +   C + +  ++  E+LKSA G ++ + V+ +LIN +
Sbjct: 564 LDGHCKHGK--VRDTEELKSAKGMVSDFGVYTSLINEF 599


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 99/443 (22%), Positives = 180/443 (40%), Gaps = 52/443 (11%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEE---SYEFNLVRRI 68
           S+  LI   C   K+  AL    ++ +  L P   T N++LH  C E   S   NL  ++
Sbjct: 116 SFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQM 175

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +   C    +PN  TF ++++   +      A +LLD + E  L PT   Y  I+ G  +
Sbjct: 176 FETTC----RPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCK 231

Query: 129 KKDVQGALMVLKEMEQ-ANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKY 184
             D   AL +L++ME+ +++ P+   +S +I +   +    D    + +++  G     +
Sbjct: 232 IGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLF 291

Query: 185 VFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
            + ++I  + + G +  A Q++ +  E  +       +AL++A    G+  +A  +Y+E+
Sbjct: 292 TYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEM 351

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWM--DGCCRLILHCVRFKQL 301
              G         ++I+    +  L+    +        Y M   GC     + + F  L
Sbjct: 352 LPRGIIPNTITYSSMIDGFCKQNRLDAAEHMF-------YLMATKGCSP---NLITFNTL 401

Query: 302 SSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTD----------PPDVQIGLDLLQFI 351
                  K++     DD M + +  +E      TT             D+   LDLLQ +
Sbjct: 402 IDGYCGAKRI-----DDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM 456

Query: 352 KDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYE------NAGLPYN-----VLSYL 400
                 P    C   L G C N + LK A  ++K  +      +A  P+N     V +Y 
Sbjct: 457 ISSGLCPDIVTCDTLLDGLCDNGK-LKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYN 515

Query: 401 WMYKAFLASGNRKSASKLLSKMP 423
            +    +  G    A +L  +MP
Sbjct: 516 ILISGLINEGKFLEAEELYEEMP 538



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 118/281 (41%), Gaps = 26/281 (9%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +I+P   +Y  LI       K   A ++ ++M+   ++P+T T +S++    +    +  
Sbjct: 320 KISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAA 379

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             ++ ++      PN  TF ++I      K  D    LL ++ E  L+   + YN ++ G
Sbjct: 380 EHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHG 439

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYV 185
           ++   D+  AL +L+EM  + + PD  T   L+    +   +    E  K          
Sbjct: 440 FYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKV--------- 490

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIP---VKSRSEVKSALVSALASHGRTSDAIIVYEE 242
                         +K+++  LDA  P   V+   +  + L+S L + G+  +A  +YEE
Sbjct: 491 -------------MQKSKK-DLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEE 536

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY 283
           +   G   +     ++I+ L  +  L+   Q+ + +    +
Sbjct: 537 MPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSF 577



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/291 (18%), Positives = 121/291 (41%), Gaps = 23/291 (7%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           +P+  ++  LI   C   ++   ++++ +M +  LV  T T N+++H      + N    
Sbjct: 392 SPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALD 451

Query: 68  IYPMICHHNLKPN---SETFRSMISLNVKIKDFDSAYSLLDDLKE--------MNLMPTA 116
           +   +    L P+    +T    +  N K+KD    + ++   K+          + P  
Sbjct: 452 LLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDV 511

Query: 117 SMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQ 173
             YN +++G   +     A  + +EM    + PD+ T+S +I     +   ++  + ++ 
Sbjct: 512 QTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDS 571

Query: 174 LKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSA-----LVSALA 228
           + S         F  LIN Y   G  +   ++  +    +  R  V +A     L+    
Sbjct: 572 MGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCE----MGRRGIVANAITYITLICGFR 627

Query: 229 SHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279
             G  + A+ +++E+  +G   +   +  ++  L S+ EL R + +LE++ 
Sbjct: 628 KVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 79/440 (17%), Positives = 167/440 (37%), Gaps = 59/440 (13%)

Query: 2   HAKLEIT--PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-C-- 56
           H   E T  P+  ++  L+   C   ++  A+ ++++M++  L P+  T  +I+   C  
Sbjct: 173 HQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKI 232

Query: 57  -EESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPT 115
            +     +L+R++  +    ++ PN   + ++I    K      A +L  +++E  + P 
Sbjct: 233 GDTVSALDLLRKMEEI---SHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289

Query: 116 ASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYE 172
              YN+++ G+        A  +L+EM +  + PD  T++ LI+    E       + Y+
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYD 349

Query: 173 QLKSAGGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHG 231
           ++   G       + ++I+ +      + A  +  L A           + L+       
Sbjct: 350 EMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAK 409

Query: 232 RTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEE---------VHDPD 282
           R  D + +  E+ E G   +      LI      G+LN  + LL+E         +   D
Sbjct: 410 RIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCD 469

Query: 283 YWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQ 342
             +DG C          +L  A ++ K ++   KD + +  ++  E          PDVQ
Sbjct: 470 TLLDGLC-------DNGKLKDALEMFKVMQKSKKDLDASHPFNGVE----------PDVQ 512

Query: 343 IGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWM 402
                                 + L+   +N      A  +++E  + G+  + ++Y  M
Sbjct: 513 T--------------------YNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSM 552

Query: 403 YKAFLASGNRKSASKLLSKM 422
                       A+++   M
Sbjct: 553 IDGLCKQSRLDEATQMFDSM 572



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/257 (20%), Positives = 109/257 (42%), Gaps = 11/257 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+D+   M++   +PS      ++         +LV  +Y  +    ++ +  +F  +I 
Sbjct: 63  AIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIK 122

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
                     A S    + ++ L P    +N ++ G   +  V  AL +  +M +   +P
Sbjct: 123 CFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRP 182

Query: 150 DSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           +  TF+ L++    E  I++     +++   G Q T+  +  +++     G+   A  ++
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLL 242

Query: 207 LDAE-----IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEH 261
              E     IP      + SA++ +L   GR SDA  ++ E++E G   +     ++I  
Sbjct: 243 RKMEEISHIIP---NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 262 LNSEGELNRLIQLLEEV 278
             S G  +   QLL+E+
Sbjct: 300 FCSSGRWSDAEQLLQEM 316



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/161 (21%), Positives = 75/161 (46%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  LI+   +  K   A ++ E+M    +VP T T +S++    +    +   
Sbjct: 507 VEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEAT 566

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++  +   +  PN  TF ++I+   K    D    L  ++    ++  A  Y  ++ G+
Sbjct: 567 QMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGF 626

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI 167
            +  ++ GAL + +EM  + V PD+ T   ++    ++E++
Sbjct: 627 RKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEEL 667


>gi|147833266|emb|CAN77478.1| hypothetical protein VITISV_013730 [Vitis vinifera]
          Length = 1009

 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 100/228 (43%), Gaps = 13/228 (5%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P+  TI   L AC +   +   + I+     +  +PN     +++ +  K  D DSA  +
Sbjct: 535 PNPITITGALPACADLNLWCQGKEIHGYTLRNGFEPNIFVSSALVDMYAKCHDMDSANKV 594

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163
              +   N +     +NA+MAGY   K  + AL +  EM    ++P S TF  L   C +
Sbjct: 595 FFRIDGRNTVS----WNALMAGYINNKQPEEALKLFLEMLGEGLQPSSITFMILFPACGD 650

Query: 164 EEDIIKYYEQLKSAGG-----QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE 218
               I++   L          ++   +  ALI+ Y  CG    A+  V D+E  V+    
Sbjct: 651 IA-AIRFGRGLHGYAAKCQLDELKNAIXSALIDMYAKCGSILDAKS-VFDSE--VEKDVP 706

Query: 219 VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
           + +A++SA + HG   +A  V+ +++  G   +    ++L+     +G
Sbjct: 707 LWNAMISAFSVHGMARNAFAVFXQMELLGIXPDHITFVSLLSACARDG 754



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 4/152 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  S+  +I+       +  ALD+  +M+     P+  TI SIL AC       L +
Sbjct: 315 LQPTVNSWNGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPACTGLKALRLGK 374

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            I+ +   H +  N     S+I +  K   +D A  +    +  N     +M+N ++A Y
Sbjct: 375 AIHXIAXKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFXKAENKN----TAMWNEMIAAY 430

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
             +  V+ AL +L+ M++   KPD  T++ ++
Sbjct: 431 VNEGKVEDALGLLRSMQKDGWKPDVITYNTIL 462



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/185 (20%), Positives = 90/185 (48%), Gaps = 6/185 (3%)

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           + I+ ++    +KP+  ++ +++S   +  + D A   L+++ E  L PT + +N I++G
Sbjct: 269 KHIFHLMQLDGVKPDLISWSALLSGFARNGEIDLALETLEEMPERGLQPTVNSWNGIISG 328

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED--IIKYYEQLKSAGGQITK 183
             +   ++ AL +   M      P+  T + ++  C+  +   + K    +    G +  
Sbjct: 329 CVQNGYLEDALDMFSRMLWYPEDPNIITIASILPACTGLKALRLGKAIHXIAXKHGIVGN 388

Query: 184 -YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
            YV  ++I+ Y+ CG ++ A +V   AE      + + + +++A  + G+  DA+ +   
Sbjct: 389 VYVEGSVIDMYSKCGSYDYAEKVFXKAE---NKNTAMWNEMIAAYVNEGKVEDALGLLRS 445

Query: 243 IKEAG 247
           +++ G
Sbjct: 446 MQKDG 450



 Score = 43.1 bits (100), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 66/314 (21%), Positives = 131/314 (41%), Gaps = 24/314 (7%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           TP    +K   T S  +    +    V+ +        +++I S+L+ C    EF   R+
Sbjct: 46  TPRIIGFKHYSTVSNHIHPQTLLPSFVDTLTNSSPTEISDSI-SLLNRCSTLSEF---RQ 101

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMP--TASMYNAIMAG 125
           I+  +    +K N+  ++S I   + +    + +SL D  K ++ +P  T   Y A++  
Sbjct: 102 IHARV----VKLNALKWKSSIGNKLVVLYCKNQWSLEDARKLLDEIPNRTVPAYAALIRS 157

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE-----EDIIKYYEQLKSAGGQ 180
           Y R +         + M    + PD      ++  CS         ++  +   KS    
Sbjct: 158 YCRSEQWDELFSXFRLMVYEGMLPDKYLVPTILKACSAMLLXRIGKMVHGFVIRKSVESD 217

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIV 239
           +  +V  ALI+ Y+ CG+   +R V       ++ R  V  +AL+SA    G   +A  +
Sbjct: 218 V--FVGNALIHFYSNCGDLGSSRSVFHS----MQERDVVSWTALISAYMEEGLXDEAKHI 271

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW--MDGCCRLILHCVR 297
           +  ++  G   +  +  AL+      GE++  ++ LEE+ +      ++    +I  CV+
Sbjct: 272 FHLMQLDGVKPDLISWSALLSGFARNGEIDLALETLEEMPERGLQPTVNSWNGIISGCVQ 331

Query: 298 FKQLSSATDLLKQL 311
              L  A D+  ++
Sbjct: 332 NGYLEDALDMFSRM 345


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 79/357 (22%), Positives = 156/357 (43%), Gaps = 59/357 (16%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSIL-HACEESYEFNLVR 66
           +P   +Y  +I   C   K   A +V  +M++  L P + T  S+L  AC++  +     
Sbjct: 302 SPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKG-DVVETE 360

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++  +   ++ P+   F SM+SL  +  + D A    + +KE  L+P   +Y  ++ GY
Sbjct: 361 KVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGY 420

Query: 127 FRKKDV------------QGALM-----------------------VLKEMEQANVKPDS 151
            RK  +            QG  M                       +  EM +  + PDS
Sbjct: 421 CRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDS 480

Query: 152 QTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
            T + LI       N ++ ++ ++++K    ++    +  L++ +   G+ + A+++  D
Sbjct: 481 YTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWAD 540

Query: 209 ---AEI---PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIE 260
               EI   P+       S LV+AL S G  ++A  V++E+     N++P  +I  ++I+
Sbjct: 541 MVSKEILPTPIS-----YSILVNALCSKGHLAEAFRVWDEMISK--NIKPTVMICNSMIK 593

Query: 261 HLNSEGELNRLIQLLEEVHDPDYWMDGCCR---LILHCVRFKQLSSATDLLKQLKDK 314
                G  +     LE++    +  D C     LI   VR + +S A  L+K+++++
Sbjct: 594 GYCRSGNASDGESFLEKMISEGFVPD-CISYNTLIYGFVREENMSKAFGLVKKMEEE 649



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/403 (19%), Positives = 164/403 (40%), Gaps = 14/403 (3%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS 86
           V +A  V +++ +  +  +  T+N +++A  +  +   V      +    + P+  T+ +
Sbjct: 216 VELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNT 275

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           +IS        + A+ L++ +      P    YN ++ G  +    + A  V  EM ++ 
Sbjct: 276 LISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSG 335

Query: 147 VKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203
           + PDS T+  L+     + D++   K +  ++S         F ++++ +T  G  +KA 
Sbjct: 336 LSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKAL 395

Query: 204 QVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
                  E  +   + + + L+      G  S A+ +  E+ + GC ++      ++  L
Sbjct: 396 MYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGL 455

Query: 263 NSEGELNRLIQLLEEVHDPDYWMDGCCRLIL---HCVRFKQLSSATDLLKQLKDKFKDDE 319
                L    +L  E+ +   + D     IL   HC +   L +A +L +++K+K    +
Sbjct: 456 CKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHC-KLGNLQNAMELFQKMKEKRIRLD 514

Query: 320 MAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKR 379
           +       + F ++   D    +I  D++   K+ L  P S      L+ A  +   L  
Sbjct: 515 VVTYNTLLDGFGKVGDIDTAK-EIWADMVS--KEILPTPIS---YSILVNALCSKGHLAE 568

Query: 380 AHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           A  +W E  +  +   V+    M K +  SGN       L KM
Sbjct: 569 AFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKM 611



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/168 (21%), Positives = 82/168 (48%), Gaps = 2/168 (1%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           EI P+  SY  L+   C    +  A  V ++M+   + P+    NS++     S   +  
Sbjct: 545 EILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDG 604

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKE--MNLMPTASMYNAIM 123
                 +      P+  ++ ++I   V+ ++   A+ L+  ++E    L+P    YN+I+
Sbjct: 605 ESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSIL 664

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY 171
            G+ R+  ++ A +VL++M +  V PD  T++ +I+   +++++ + +
Sbjct: 665 HGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAF 712



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/194 (20%), Positives = 84/194 (43%), Gaps = 3/194 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P +  Y  LI   C    + VA+++  +M+Q        T N+ILH   +        
Sbjct: 406 LIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEAD 465

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++  +    L P+S T   +I  + K+ +  +A  L   +KE  +      YN ++ G+
Sbjct: 466 KLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGF 525

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE--DIIKYYEQLKSAGGQITK 183
            +  D+  A  +  +M    + P   ++S L++  CS     +  + ++++ S   + T 
Sbjct: 526 GKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTV 585

Query: 184 YVFMALINAYTTCG 197
            +  ++I  Y   G
Sbjct: 586 MICNSMIKGYCRSG 599


>gi|110288709|gb|ABG65945.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|110288711|gb|ABG65946.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 614

 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/283 (19%), Positives = 116/283 (40%), Gaps = 14/283 (4%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P   T N +L  C  S +F+   ++  ++    LKP+ + + ++IS   K    D+ + +
Sbjct: 105 PKMSTFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEV 164

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163
             ++    + P  + Y+A++ G  +   V  A      M    VKPD   F+ LI  C  
Sbjct: 165 FHEMVSAGIEPNVNTYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACGE 224

Query: 164 EEDIIKYYEQLKSAGGQITK-----------YVFMALINAYTTCGEFEKARQVV-LDAEI 211
              + + ++ L     + ++               AL+      G+ ++AR+V  +  E 
Sbjct: 225 SGAVARAFDVLSEMTAEASESKGSKPILPDHVTVGALMKTCIQAGQADRAREVYKMLQEY 284

Query: 212 PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRL 271
            +K   EV +  + + +  G    A+ +YE++ + G   +   + AL++        +  
Sbjct: 285 NIKGTPEVYTIALRSCSLTGDLGFALKIYEDMNKIGVQPDEMFLSALVDVAGHARRADAA 344

Query: 272 IQLLEEVHDPDYWMDGCC--RLILHCVRFKQLSSATDLLKQLK 312
            +++++     Y +       L+  C   K    A  L +++K
Sbjct: 345 FEIMKDARAKGYQVGTIAYSSLMGACCNAKDWKKALQLFEEIK 387



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/267 (20%), Positives = 117/267 (43%), Gaps = 16/267 (5%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMV------QGE--LVPSTETINSILHACE 57
           ++ P    +  LI+   +   V  A DV+ +M       +G   ++P   T+ +++  C 
Sbjct: 207 KVKPDRVVFNALISACGESGAVARAFDVLSEMTAEASESKGSKPILPDHVTVGALMKTCI 266

Query: 58  ESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTAS 117
           ++ + +  R +Y M+  +N+K   E +   +       D   A  + +D+ ++ + P   
Sbjct: 267 QAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYEDMNKIGVQPDEM 326

Query: 118 MYNAI--MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKYYE 172
             +A+  +AG+ R+ D   A  ++K+      +  +  +S L+  C N +D    ++ +E
Sbjct: 327 FLSALVDVAGHARRAD--AAFEIMKDARAKGYQVGTIAYSSLMGACCNAKDWKKALQLFE 384

Query: 173 QLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHG 231
           ++KS     T  +  ALI A     +  K+ +V+ + + + V       S L  A   + 
Sbjct: 385 EIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKRLGVCPNMITYSVLFVACERNA 444

Query: 232 RTSDAIIVYEEIKEAGCNLEPRAVIAL 258
                + ++E++K    +L P  V  L
Sbjct: 445 EAQLGLDLFEQLKIDSIDLNPTIVGCL 471


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/276 (18%), Positives = 118/276 (42%), Gaps = 4/276 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  LI   C+  ++  A ++  +M      P      ++L    +  + +  +  
Sbjct: 295 PDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEF 354

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +      P+  TF  ++ +  K +DFD A++  D +++  ++P    YN ++ G  R
Sbjct: 355 WSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLR 414

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYV 185
              ++ AL +L  ME   V+P + T++  I       +    ++ +E++K+ G       
Sbjct: 415 AGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVA 474

Query: 186 FMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
             A + +    G   +A+ +     E  +   S   + ++   +  G+  +A+ +  E+ 
Sbjct: 475 CNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMI 534

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
             GC  +   V +LI+ L   G ++   Q+ + + D
Sbjct: 535 RNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKD 570



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 116/290 (40%), Gaps = 45/290 (15%)

Query: 4    KLEITPSSASYKKLITYSCDLLKVHV---ALDVVEQMVQGELVPSTETINSILHACEESY 60
            KL I+P+ ASY  LI    +LL+VH    A D+ + M      P   T N +L    +S 
Sbjct: 781  KLGISPTLASYNCLIG---ELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSG 837

Query: 61   EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
            +   +  +Y  +     KP++ T+  +IS   K  + D A     DL   +  PT   Y 
Sbjct: 838  KITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYG 897

Query: 121  AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQ 180
             ++ G  +   ++ A+ + +EM     KP          NC+                  
Sbjct: 898  PLIDGLAKVGRLEEAMRLFEEMSDYGCKP----------NCA------------------ 929

Query: 181  ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAII 238
                +F  LIN Y   G+ E A Q +    +    R ++KS   LV  L   GR  +A+ 
Sbjct: 930  ----IFNILINGYGKIGDTETACQ-LFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALY 984

Query: 239  VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYW 284
             + E+K  G + +  A   +I  L     +   + L  E+ +    PD +
Sbjct: 985  YFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLY 1034



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 81/195 (41%), Gaps = 36/195 (18%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P++ +Y   I Y     +   A++  E+M    +VP+    N+ L++  E       +
Sbjct: 433 VQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAK 492

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLL---------------------- 104
            ++  +  + L P+S T+  M+    K+   D A +LL                      
Sbjct: 493 TMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSL 552

Query: 105 -------------DDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151
                        D +K+M L PT   YN +++G  ++  VQ A+ + + M +    P++
Sbjct: 553 YKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNT 612

Query: 152 QTFSYLIH-NCSNEE 165
            +F+ L+   C N+E
Sbjct: 613 ISFNTLLDCFCKNDE 627



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/285 (16%), Positives = 111/285 (38%), Gaps = 39/285 (13%)

Query: 33  VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92
           V+ +M +   V +  + N ++H   +S        +Y  +    LKP+ +T+ +++    
Sbjct: 179 VLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALG 238

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
           K +D +    LL +++++ L P    +   +    R   +  A  + + M+     PD  
Sbjct: 239 KKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLV 298

Query: 153 TFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR----QV 205
           T++ LI    N    E+  + + ++K+ G +  + +++ L++ +   G+ +  +    Q+
Sbjct: 299 TYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQM 358

Query: 206 VLDAEIP------------VKSRS--------------------EVKSALVSALASHGRT 233
             D  +P             K+R                        + L+  L   GR 
Sbjct: 359 EADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRI 418

Query: 234 SDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            DA+ +   ++  G           I++    GE  + ++  E++
Sbjct: 419 EDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKM 463



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 76/361 (21%), Positives = 147/361 (40%), Gaps = 39/361 (10%)

Query: 100  AYSLLDDL-KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYL- 157
            AY + D   K++ + PT + YN ++         + A  + K+M+     PD+ TF+ L 
Sbjct: 771  AYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLL 830

Query: 158  -IHNCSNE-EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVK 214
             +H  S +  ++ + Y+++ S   +     +  +I++       +KA     D      +
Sbjct: 831  AVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFR 890

Query: 215  SRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQL 274
                    L+  LA  GR  +A+ ++EE+ + GC         LI      G+     QL
Sbjct: 891  PTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQL 950

Query: 275  LEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIA 334
             +             R++   +R   L S T L+  L    + DE    Y+F+E+  +  
Sbjct: 951  FK-------------RMVNEGIR-PDLKSYTILVDCLCLAGRVDEAL--YYFNEL--KST 992

Query: 335  TTDPPDVQI-----GLDLLQFIKDEL---------GLPPSRKCLDFLLGACVNARDLKRA 380
              DP  +       GL   Q +++ L         G+ P     + L+     A  +++A
Sbjct: 993  GLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQA 1052

Query: 381  HLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKD--DPHVRFVIQACKQ 438
              +++E + AGL  +V +Y  + + +  S N + A  +   M  D  +P++    Q   Q
Sbjct: 1053 KRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQLPNQ 1112

Query: 439  T 439
            +
Sbjct: 1113 S 1113



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 50/260 (19%), Positives = 108/260 (41%), Gaps = 10/260 (3%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           K+  A ++  +M      P   T   ++ A   + +    + ++  +  +  KP+   + 
Sbjct: 277 KIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYI 336

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           +++       D D+       ++    MP    +  ++    + +D   A      M + 
Sbjct: 337 TLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQ 396

Query: 146 NVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
            + P+  T++ LI         ED +K    ++S G Q T Y +   I+ +   GE  KA
Sbjct: 397 GILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKA 456

Query: 203 RQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--AL 258
            +    + A+  V +     ++L S LA  GR  +A  ++  ++E G  L P +V    +
Sbjct: 457 VETFEKMKAKGIVPNIVACNASLYS-LAEMGRLREAKTMFNGLRENG--LAPDSVTYNMM 513

Query: 259 IEHLNSEGELNRLIQLLEEV 278
           ++  +  G+++  + LL E+
Sbjct: 514 MKCYSKVGQVDEAVNLLSEM 533



 Score = 40.0 bits (92), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 2/152 (1%)

Query: 7    ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
            I P   SY  L+   C   +V  AL    ++    L P     N I++   +S       
Sbjct: 959  IRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEAL 1018

Query: 67   RIYPMICHHNLKPNSETFRSMISLNVKIKDF-DSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +Y  + +  + P+  T+ S++ LN+ +    + A  + ++L+   L P    YNA++ G
Sbjct: 1019 ALYNEMRNRGIVPDLYTYNSLM-LNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRG 1077

Query: 126  YFRKKDVQGALMVLKEMEQANVKPDSQTFSYL 157
            Y   ++ + A  V K M      P+  T++ L
Sbjct: 1078 YSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109



 Score = 39.3 bits (90), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 63/320 (19%), Positives = 127/320 (39%), Gaps = 19/320 (5%)

Query: 4   KLEITPSSASYKKLITYSCDLLK---VHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           K  I P+  +Y  LI   C LL+   +  AL ++  M    + P+  T N  +    +S 
Sbjct: 395 KQGILPNLHTYNTLI---CGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSG 451

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           E       +  +    + PN     + +    ++     A ++ + L+E  L P +  YN
Sbjct: 452 ETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYN 511

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSA 177
            +M  Y +   V  A+ +L EM +   +PD    + LI   +     ++  + ++++K  
Sbjct: 512 MMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDM 571

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSD 235
               T   +  L++     G  +KA + + ++ I  K      S   L+     +     
Sbjct: 572 KLSPTVVTYNTLLSGLGKEGRVQKAIE-LFESMIEKKCSPNTISFNTLLDCFCKNDEVEL 630

Query: 236 AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLI----QLLEEVHDPDYWMDGCCRL 291
           A+ ++ ++    C  +      +I  L  E ++N       QL + +H PD+     C L
Sbjct: 631 ALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKSMH-PDHVT--ICTL 687

Query: 292 ILHCVRFKQLSSATDLLKQL 311
           +   V+  Q+  A  + +  
Sbjct: 688 LPGLVKCGQIGDAISIARDF 707


>gi|356519224|ref|XP_003528273.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Glycine max]
          Length = 805

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/205 (19%), Positives = 101/205 (49%), Gaps = 14/205 (6%)

Query: 50  NSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKE 109
           N++L AC E        +++  +   ++ PN  ++ S+I    K      A ++  ++  
Sbjct: 427 NTMLAACAEQGLSGEALKLFFQMQLESVPPNVVSWNSLIFGFFKNGQVAEARNMFAEMCS 486

Query: 110 MNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK 169
             +MP    +  +M+G  +     GA+MV +EM+   ++P+S + +  +  C++    + 
Sbjct: 487 SGVMPNLITWTTMMSGLVQNGFGSGAMMVFREMQDVGIRPNSMSITSALSGCTS----MA 542

Query: 170 YYEQLKSAGGQITK-------YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSA 222
             +  ++  G + +       ++  ++++ Y  CG  + A+ V    ++       V +A
Sbjct: 543 LLKHGRAIHGYVMRRDLSQSIHIITSIMDMYAKCGSLDGAKCVF---KMCSTKELYVYNA 599

Query: 223 LVSALASHGRTSDAIIVYEEIKEAG 247
           ++SA ASHG+  +A+++++++++ G
Sbjct: 600 MISAYASHGQAREALVLFKQMEKEG 624



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 4/134 (2%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+ V  +M    + P++ +I S L  C         R I+  +   +L  +     S++ 
Sbjct: 512 AMMVFREMQDVGIRPNSMSITSALSGCTSMALLKHGRAIHGYVMRRDLSQSIHIITSIMD 571

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K    D A  +        L     +YNA+++ Y      + AL++ K+ME+  + P
Sbjct: 572 MYAKCGSLDGAKCVFKMCSTKELY----VYNAMISAYASHGQAREALVLFKQMEKEGIVP 627

Query: 150 DSQTFSYLIHNCSN 163
           D  T + ++  CS+
Sbjct: 628 DHITLTSVLSACSH 641


>gi|297823227|ref|XP_002879496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325335|gb|EFH55755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 617

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 117/243 (48%), Gaps = 13/243 (5%)

Query: 6   EITPS-SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           EIT   + S+  +I+   +  +   A+D+  +M +    P   T+ S+L AC    +   
Sbjct: 189 EITDRVTVSWNSMISGYSEAGRAKDAMDLFRKMEEEGFEPDERTLVSMLGACAHLGDLTT 248

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
            R +  M     +  ++     +I++  K  D DSA  + + + + + +     +NA++ 
Sbjct: 249 GRLLEKMAITKKIGLSTFLGSKLITMYGKCGDLDSARRVFNQMIKKDRVA----WNAMIT 304

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK- 183
            Y +      A  +  EME+  V PD+ T S ++  C +    ++  +++++   +I+  
Sbjct: 305 VYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGS-VGALELGKRIETHASEISLQ 363

Query: 184 ---YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
              YV   L++ Y  CG  E+A +V     +PVK+ +   +A+++A A  G   +A++++
Sbjct: 364 HNIYVATGLVDMYGKCGHIEEALRVF--EAMPVKNEA-TWNAMITAYAHQGHAKEALLLF 420

Query: 241 EEI 243
           +++
Sbjct: 421 DQM 423



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 81/369 (21%), Positives = 155/369 (42%), Gaps = 31/369 (8%)

Query: 63  NLVRRIYP-MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
           N +R I   M+ H   KPN      +I   V++ DF+ A  LL   +E    P    +N 
Sbjct: 48  NQLREIQAQMLLHSVEKPNF-----LIPKAVELGDFNYASFLLSVTEE----PNHYSFNY 98

Query: 122 IMAGYFR-KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSA 177
           ++ G      D +GAL + + M+ + +KPD+ T++++   C   E+I      +  L   
Sbjct: 99  MIRGLTNIWNDHEGALSLYRRMKYSGLKPDNFTYNFVFIACGKREEIGVGRSVHSSLFKV 158

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDA 236
           G +   ++  +LI  Y  CG    AR+V  +    +  R  V  ++++S  +  GR  DA
Sbjct: 159 GLERDDHISHSLIMMYAKCGLVGYARKVFDE----ITDRVTVSWNSMISGYSEAGRAKDA 214

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGEL--NRLIQLLEEVHDPDYWMDGCCRLILH 294
           + ++ +++E G   + R +++++      G+L   RL++ +              +LI  
Sbjct: 215 MDLFRKMEEEGFEPDERTLVSMLGACAHLGDLTTGRLLEKMAITKKIGLSTFLGSKLITM 274

Query: 295 CVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDE 354
             +   L SA  +  Q+    K D +A     + ++ Q   +           L F  ++
Sbjct: 275 YGKCGDLDSARRVFNQM---IKKDRVAWNAMIT-VYSQNGKSSEAFK------LFFEMEK 324

Query: 355 LGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKS 414
            G+ P    L  +L AC +   L+    I        L +N+     +   +   G+ + 
Sbjct: 325 TGVSPDAGTLSTVLSACGSVGALELGKRIETHASEISLQHNIYVATGLVDMYGKCGHIEE 384

Query: 415 ASKLLSKMP 423
           A ++   MP
Sbjct: 385 ALRVFEAMP 393


>gi|297821008|ref|XP_002878387.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324225|gb|EFH54646.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 766

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/311 (20%), Positives = 129/311 (41%), Gaps = 40/311 (12%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
            P++ +Y  LI   C   K+  A +VV +M +  + P   T+N+I+      +  N+   
Sbjct: 403 VPNTVTYNCLIDGYCRAGKLETAKEVVSRMKEDGIKPDVVTVNTIVGGMCRHHGLNMAVL 462

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG-- 125
            +  +    +K N  T+ ++I     + + + A    D + E    P A +Y A+++G  
Sbjct: 463 FFMDMEKEGVKGNVVTYMTLIHACCSLSNIEKAMHWFDKMLEAGCSPDAKIYYALISGLC 522

Query: 126 ---------------------------------YFRKKDVQGALMVLKEMEQANVKPDSQ 152
                                            +  K + +    +L +ME+  +KPDS 
Sbjct: 523 QVRRDHDAIRVVEKLREGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGMKPDSI 582

Query: 153 TFSYLIHNCSNEED---IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA 209
           T++ LI      +D   + +  EQ++      T   + A+I AY + GE  +A ++  D 
Sbjct: 583 TYNTLISFFGKHKDFESVERMMEQMREDELDPTVATYGAVIEAYCSVGELGEALKLFKDM 642

Query: 210 EI--PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
            +   V   + + + L++A +  G    A+ + EE+K            AL + L  + +
Sbjct: 643 GLRSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLKEKNQ 702

Query: 268 LNRLIQLLEEV 278
              L++L++E+
Sbjct: 703 AETLLKLMDEM 713



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 96/440 (21%), Positives = 178/440 (40%), Gaps = 69/440 (15%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMV-----QGELVPSTET-INSILHAC- 56
           +++I P   +   LI   C   +V  AL V EQM       G ++ +     N+++    
Sbjct: 322 EMKIRPDVVTLGILINTLCKSRRVDEALQVFEQMCGKRTDDGNVIKADSIHFNTLIDGLC 381

Query: 57  -----EESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMN 111
                +E+ E  LVR    M       PN+ T+  +I    +    ++A  ++  +KE  
Sbjct: 382 KVGRLKEAEEL-LVR----MKMEERCVPNTVTYNCLIDGYCRAGKLETAKEVVSRMKEDG 436

Query: 112 LMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDII 168
           + P     N I+ G  R   +  A++   +ME+  VK +  T+  LIH C   SN E  +
Sbjct: 437 IKPDVVTVNTIVGGMCRHHGLNMAVLFFMDMEKEGVKGNVVTYMTLIHACCSLSNIEKAM 496

Query: 169 KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALA 228
            +++++  AG                 C           DA+I          AL+S L 
Sbjct: 497 HWFDKMLEAG-----------------CSP---------DAKI--------YYALISGLC 522

Query: 229 SHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC 288
              R  DAI V E+++E G +L+  A   LI     +    ++ ++L ++       D  
Sbjct: 523 QVRRDHDAIRVVEKLREGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGMKPDSI 582

Query: 289 C--RLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLD 346
               LI    + K   S   +++Q+++   D  +A      E +C +        ++G +
Sbjct: 583 TYNTLISFFGKHKDFESVERMMEQMREDELDPTVATYGAVIEAYCSVG-------ELG-E 634

Query: 347 LLQFIKDELGL----PPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWM 402
            L+  KD +GL     P+    + L+ A     +  +A  + +E +   +  NV +Y  +
Sbjct: 635 ALKLFKD-MGLRSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNAL 693

Query: 403 YKAFLASGNRKSASKLLSKM 422
           +K        ++  KL+ +M
Sbjct: 694 FKCLKEKNQAETLLKLMDEM 713



 Score = 45.4 bits (106), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 109/236 (46%), Gaps = 21/236 (8%)

Query: 30  ALDVVEQMVQGELV--PSTETINSILHACEESYEFNLV--RRIYPMICH---HNLKPNSE 82
           A  V+++M+Q E V  P+  T + +LH   E ++  L+   +I  +I     H + PNS 
Sbjct: 204 AFKVLDEMLQKESVFPPNRITADIVLH---EVWKGRLLTEEKIIGLISRFSSHGVSPNSV 260

Query: 83  TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM 142
                IS   K    ++A+ +L DL +      A  +NA+++   R  ++     ++ +M
Sbjct: 261 WLTRFISSLCKNARTNAAWDILSDLMKNKAPLEAPPFNALLSCLGRNMNIGRMNALVLKM 320

Query: 143 EQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQL---KSAGGQITK---YVFMALINAY 193
           ++  ++PD  T   LI+  C +   ++ ++ +EQ+   ++  G + K     F  LI+  
Sbjct: 321 DEMKIRPDVVTLGILINTLCKSRRVDEALQVFEQMCGKRTDDGNVIKADSIHFNTLIDGL 380

Query: 194 TTCGEFEKARQVVLDAEIPVK--SRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
              G  ++A ++++  ++  +    +   + L+      G+   A  V   +KE G
Sbjct: 381 CKVGRLKEAEELLVRMKMEERCVPNTVTYNCLIDGYCRAGKLETAKEVVSRMKEDG 436


>gi|413924821|gb|AFW64753.1| hypothetical protein ZEAMMB73_344298 [Zea mays]
          Length = 698

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 91/453 (20%), Positives = 176/453 (38%), Gaps = 46/453 (10%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
            P +  Y  LI   C    +   L ++ +M    ++P+  T  +I+H      +   V  
Sbjct: 113 VPGAVFYNVLIDGYCRRGDIGRGLLLLGEMETKGIIPTVVTYGAIIHWLGRKGDLTKVES 172

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +   +    L PN + + ++I+   K +    A  +L+ + +    P    +N ++AG+ 
Sbjct: 173 LLGEMRARGLSPNVQIYNTVINALCKCRSASQASDMLNQMVKSRFNPDVVTFNTMIAGFC 232

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEEDIIK--YYEQLKSAGGQITKY 184
           R+ DV+ AL +L+E  +  ++P+  +++ LIH  C   E ++      ++   G      
Sbjct: 233 REGDVREALKLLREAIRRGLEPNQLSYTPLIHGFCVRGEAMVASDLLVEMMGRGHTPDMI 292

Query: 185 VFMALINAYTTCGEFEKA---------RQVVLDAEIPVKSRSEVKSALVSALASHGRTSD 235
              ALI+     G+   A         RQV+ DA I         + L+S L      S 
Sbjct: 293 TLGALIHGLVVSGQVNDALIVREKMAERQVMPDANI--------YNVLISGLCKKRMLSA 344

Query: 236 AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN---RLIQLLEEVHDPD-----YWMDG 287
           A  + EE+ E     +      LI+      +L+   ++ + +EE   PD       + G
Sbjct: 345 AKNLLEEMLEQKVQPDKFIYTTLIDGFVRSDKLSDARKIFEFMEEKACPDIVAYNVMIKG 404

Query: 288 CCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDL 347
            C       +F  +  A   +  ++   K   +  E+ ++ +    A     D+   L L
Sbjct: 405 YC-------KFGMMKEAVTCMSSMR---KAGCIPDEFTYTTLVDGYAKKG--DISASLRL 452

Query: 348 LQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFL 407
           L  +      P        + G C N  D   A  ++ + ++ GL  NV+ Y  +  +  
Sbjct: 453 LCDMMKRRCKPNIFTYASLICGYC-NIGDTYSAEDLFAKMQSEGLFPNVVHYTVLIGSLF 511

Query: 408 ASGNRKSASK-----LLSKMPKDDPHVRFVIQA 435
                  A+      LL+  P +D  V +++  
Sbjct: 512 KKDKVIQAAAYFEHMLLNHCPPNDATVHYLVNG 544



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/273 (19%), Positives = 110/273 (40%), Gaps = 5/273 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           ++P+   Y  +I   C       A D++ QMV+    P   T N+++   C E      +
Sbjct: 182 LSPNVQIYNTVINALCKCRSASQASDMLNQMVKSRFNPDVVTFNTMIAGFCREGDVREAL 241

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           + +   I    L+PN  ++  +I       +   A  LL ++      P      A++ G
Sbjct: 242 KLLREAI-RRGLEPNQLSYTPLIHGFCVRGEAMVASDLLVEMMGRGHTPDMITLGALIHG 300

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQIT 182
                 V  AL+V ++M +  V PD+  ++ LI     +  +       E++     Q  
Sbjct: 301 LVVSGQVNDALIVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLEEMLEQKVQPD 360

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           K+++  LI+ +    +   AR++    E          + ++      G   +A+     
Sbjct: 361 KFIYTTLIDGFVRSDKLSDARKIFEFMEEKACPDIVAYNVMIKGYCKFGMMKEAVTCMSS 420

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLL 275
           +++AGC  +      L++    +G+++  ++LL
Sbjct: 421 MRKAGCIPDEFTYTTLVDGYAKKGDISASLRLL 453



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 55/268 (20%), Positives = 104/268 (38%), Gaps = 34/268 (12%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  +I   C    +  A+  +  M +   +P   T  +++    +  + +   R+
Sbjct: 393 PDIVAYNVMIKGYCKFGMMKEAVTCMSSMRKAGCIPDEFTYTTLVDGYAKKGDISASLRL 452

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +     KPN  T+ S+I     I D  SA  L   ++   L P    Y  ++   F+
Sbjct: 453 LCDMMKRRCKPNIFTYASLICGYCNIGDTYSAEDLFAKMQSEGLFPNVVHYTVLIGSLFK 512

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NC------SNEEDIIKYYEQLKSAGG 179
           K  V  A    + M   +  P+  T  YL++   NC      SN  D  + +E+      
Sbjct: 513 KDKVIQAAAYFEHMLLNHCPPNDATVHYLVNGLVNCRHGMVNSNRSDTKQAHEK------ 566

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
                   AL++ +         R ++ D   P   R    +A++ +L  H     A+ +
Sbjct: 567 -------SALLDVF---------RGLISDGLDP---RISAYNAIIFSLCRHNMLGKAMDL 607

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGE 267
            +++   GC  +P   ++L+   +S GE
Sbjct: 608 KDKMSNKGCLPDPITFLSLLYGFSSAGE 635



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/164 (20%), Positives = 75/164 (45%), Gaps = 1/164 (0%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           A+ ++ P +  Y  LI+  C    +  A +++E+M++ ++ P      +++     S + 
Sbjct: 318 AERQVMPDANIYNVLISGLCKKRMLSAAKNLLEEMLEQKVQPDKFIYTTLIDGFVRSDKL 377

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           +  R+I+  +      P+   +  MI    K      A + +  +++   +P    Y  +
Sbjct: 378 SDARKIFEFM-EEKACPDIVAYNVMIKGYCKFGMMKEAVTCMSSMRKAGCIPDEFTYTTL 436

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED 166
           + GY +K D+  +L +L +M +   KP+  T++ LI    N  D
Sbjct: 437 VDGYAKKGDISASLRLLCDMMKRRCKPNIFTYASLICGYCNIGD 480


>gi|255553861|ref|XP_002517971.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542953|gb|EEF44489.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1029

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 99/209 (47%), Gaps = 5/209 (2%)

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
           HH   P+  T+ S+I +       D A  LL +++ +   P  + +++I+A Y R   + 
Sbjct: 580 HHGTWPDECTYNSLIQMFSGADLMDQARDLLTEMQGVGFKPQCATFSSIIACYARLGQLS 639

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALI 190
            A  V +EM +  VKP+   +  +I+  + E ++   +KY+  ++  G    + V  +LI
Sbjct: 640 DAAGVYQEMVKVGVKPNEVVYGAIINGYAEEGNVKEALKYFHMMEEYGISANQIVLTSLI 699

Query: 191 NAYTTCGEFEKARQVVLDAEIPVKSRSEVKS-ALVSALASHGRTSDAIIVYEEIKEAGCN 249
             Y+  G F+ A+Q+             + S +++S  A  G  S+A +V+  ++E G +
Sbjct: 700 KVYSKLGCFDSAKQLYQKMMCLEGGPDIIASNSMISLYADLGMISEAELVFNNLREKG-S 758

Query: 250 LEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            +  +   ++      G L+  I + EE+
Sbjct: 759 ADGVSYATMMYLYKGMGMLDEAIDVAEEM 787



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 55/308 (17%), Positives = 130/308 (42%), Gaps = 8/308 (2%)

Query: 11  SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYP 70
           +++Y  LI       ++  A D+   M++  +   T T N++++ C      +    +  
Sbjct: 342 TSTYNTLIDLYGKAGRLGDAADIFSDMMKSGVAMDTITFNTMIYTCGSHGHLSEAETLLN 401

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
            +    + P++ T+   +SL     + D+A      ++E+ L+P    + AI+     + 
Sbjct: 402 KMEDRGVSPDTRTYNIFLSLYADEGNIDAAIKCYKKIREVGLLPDTVSHRAILHELCERN 461

Query: 131 DVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA--GGQITKYVFMA 188
            V+ A  +++E+E+++ + D  +   L+    N+    +  + L     GG ++     A
Sbjct: 462 MVKEAEAIIEEIEKSSKQVDEHSLPGLVKMYINKGLFDRANDLLNKCQFGGGLSAKTNAA 521

Query: 189 LINAYTTCGEFEKARQVVLDAEIPVKSRSEV--KSALVSALASHGRTSDAIIVYEEIKEA 246
           +I+AY   G + +A  V       V  ++++   + ++ A         A  ++  ++  
Sbjct: 522 IIDAYAENGLWAEAEAVFYRKRDLVGQKTDILEYNVMIKAYGKGKLYEKAFTLFRSMRHH 581

Query: 247 GCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRL--ILHC-VRFKQLSS 303
           G   +     +LI+  +    +++   LL E+    +    C     I+ C  R  QLS 
Sbjct: 582 GTWPDECTYNSLIQMFSGADLMDQARDLLTEMQGVGF-KPQCATFSSIIACYARLGQLSD 640

Query: 304 ATDLLKQL 311
           A  + +++
Sbjct: 641 AAGVYQEM 648



 Score = 38.9 bits (89), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 55/311 (17%), Positives = 117/311 (37%), Gaps = 39/311 (12%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           ++P + +Y   ++   D   +  A+   +++ +  L+P T +  +ILH   E        
Sbjct: 408 VSPDTRTYNIFLSLYADEGNIDAAIKCYKKIREVGLLPDTVSHRAILHELCERNMVKEAE 467

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLL------------------DDLK 108
            I   I   + + +  +   ++ + +    FD A  LL                  D   
Sbjct: 468 AIIEEIEKSSKQVDEHSLPGLVKMYINKGLFDRANDLLNKCQFGGGLSAKTNAAIIDAYA 527

Query: 109 EMNLMPTASM-----------------YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151
           E  L   A                   YN ++  Y + K  + A  + + M      PD 
Sbjct: 528 ENGLWAEAEAVFYRKRDLVGQKTDILEYNVMIKAYGKGKLYEKAFTLFRSMRHHGTWPDE 587

Query: 152 QTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
            T++ LI   S  + + +  +   +++  G +     F ++I  Y   G+   A  V  +
Sbjct: 588 CTYNSLIQMFSGADLMDQARDLLTEMQGVGFKPQCATFSSIIACYARLGQLSDAAGVYQE 647

Query: 209 -AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
             ++ VK    V  A+++  A  G   +A+  +  ++E G +     + +LI+  +  G 
Sbjct: 648 MVKVGVKPNEVVYGAIINGYAEEGNVKEALKYFHMMEEYGISANQIVLTSLIKVYSKLGC 707

Query: 268 LNRLIQLLEEV 278
            +   QL +++
Sbjct: 708 FDSAKQLYQKM 718


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 127/278 (45%), Gaps = 16/278 (5%)

Query: 8   TPSSASYKKLITYSCDLLKVHV-ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
            P S  +  LI  +       V +L    +MV   + PS  T  S++ +C +       R
Sbjct: 72  NPDSFLFTSLIRSTSKFHNFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRHGR 131

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            I+  +  +    +     +++S   K     +A  + D +++ +++     +N++++GY
Sbjct: 132 IIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVT----WNSMISGY 187

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITK 183
            +    + A+ +   M++  V+P+S TF  ++  C++    I     +E     G  +  
Sbjct: 188 EQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNV 247

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEE 242
            +  +LIN YT CG   KAR+ V D+   +K R+ V  +A++S   ++G  S A+ ++ E
Sbjct: 248 VLGTSLINMYTRCGNVSKARE-VFDS---MKERNVVAWTAMISGYGTNGYGSQAVELFHE 303

Query: 243 IKEAGC---NLEPRAVIALIEHLNSEGELNRLIQLLEE 277
           ++  G    ++   AV++   H     E  R+ + + E
Sbjct: 304 MRRNGLLPNSITFVAVLSACAHAGLVNEGRRVFESMRE 341


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/339 (19%), Positives = 138/339 (40%), Gaps = 7/339 (2%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           + +P++ +Y  LI+  C   +V  A ++   +    ++P   T NS++     +    L 
Sbjct: 381 DFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLA 440

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             ++  +      P+  T+  +I         + A SLL +++          YN ++ G
Sbjct: 441 MELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDG 500

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQIT 182
           + + K ++ A  +  EME   +  +  T++ LI   C N   E+  +  +Q+   G +  
Sbjct: 501 FCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPD 560

Query: 183 KYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
           K+ + +L+  +   G+ +KA  +V        +  S     L+  L+  GR   A  +  
Sbjct: 561 KFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLR 620

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILH---CVRF 298
            ++  G  L P+    +I+ L  E   +  ++L  E+ +     D     ++    C   
Sbjct: 621 TVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGG 680

Query: 299 KQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTD 337
             +  A D L ++ DK    + +     +E  C ++  D
Sbjct: 681 GPIGEAVDFLVEMTDKGFLPDFSSFLMLAEGLCALSMED 719



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/314 (20%), Positives = 141/314 (44%), Gaps = 10/314 (3%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   ++  L+   C +  V  AL++++ M+Q    P   T NS++    +  E      I
Sbjct: 314 PDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEI 373

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +   +  PN+ T+ ++IS   K    + A  L   L    ++P    +N+++ G   
Sbjct: 374 LNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCL 433

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYV 185
             + + A+ + +EM+     PD  T++ LI + CS    E+ +   ++++S+G       
Sbjct: 434 TNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVT 493

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIK 244
           +  LI+ +      E+A ++  + E+   SR+ V  + L+  L  + R  +A  + +++ 
Sbjct: 494 YNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQML 553

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDYWMDGCCRLILHCVRFKQ 300
             G   +     +L+ +    G++ +   +++ +     +PD    G   LIL   +  +
Sbjct: 554 MEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGT--LILGLSKAGR 611

Query: 301 LSSATDLLKQLKDK 314
           +  A+ LL+ ++ K
Sbjct: 612 VELASRLLRTVQLK 625



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 93/435 (21%), Positives = 181/435 (41%), Gaps = 27/435 (6%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           ++P   ++  L+    +   ++ AL + EQMV      S  T+N ++H  C+E     ++
Sbjct: 242 LSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVL 301

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             I  M  +   +P+  TF S+++   +I     A  +LD + +    P    YN+++ G
Sbjct: 302 SFIDEM-SNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFG 360

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQIT 182
             +  +V+ A+ +L +M   +  P++ T++ LI     E   E+  +    L S G    
Sbjct: 361 LCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPD 420

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYE 241
              F +LI           A ++  + +       E   + L+ +L S GR  +A+ + +
Sbjct: 421 VCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLK 480

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCR-------LILH 294
           E++ +GC+        LI+        N+ I+  EE+ D +  + G  R       LI  
Sbjct: 481 EMESSGCSRNVVTYNTLIDGFCK----NKRIEEAEEIFD-EMELQGISRNVVTYNTLIDG 535

Query: 295 CVRFKQLSSATDLLKQ-LKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKD 353
             + +++  A  L+ Q L +  K D+       +  FC+       D++   D++Q +  
Sbjct: 536 LCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLT-YFCRAG-----DIKKAADIVQTMTS 589

Query: 354 ELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRK 413
               P S      +LG     R ++ A  + +  +  G+     +Y  + KA        
Sbjct: 590 NGCEPDSVTYGTLILGLSKAGR-VELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTS 648

Query: 414 SASKLLSK-MPKDDP 427
            A +L  + M K DP
Sbjct: 649 EAVRLFREMMEKGDP 663



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 68/380 (17%), Positives = 156/380 (41%), Gaps = 45/380 (11%)

Query: 48  TINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL 107
           T N +L+   +  +  LV  +   +    +KP+  TF  +I    +      A  +++++
Sbjct: 178 TYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEM 237

Query: 108 KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE--- 164
               L P    +  +M G+  + ++ GAL + ++M  A     + T + L+H    E   
Sbjct: 238 GSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRI 297

Query: 165 EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALV 224
           E+++ + +++ + G +  ++ F +L+N     G  + A ++                  +
Sbjct: 298 EEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEI------------------L 339

Query: 225 SALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW 284
             +   G   D I  Y  +    C L               GE+   +++L ++   D+ 
Sbjct: 340 DVMLQEGFDPD-IFTYNSLIFGLCKL---------------GEVEEAVEILNQMILRDFS 383

Query: 285 MDGCC--RLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQ 342
            +      LI    +  Q+  AT+L + L  K    ++     F+ +   +  T+  + +
Sbjct: 384 PNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCT---FNSLIQGLCLTN--NHR 438

Query: 343 IGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWM 402
           + ++L + +K + G  P     + L+ +  +   L+ A  + KE E++G   NV++Y  +
Sbjct: 439 LAMELFEEMKTK-GCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTL 497

Query: 403 YKAFLASGNRKSASKLLSKM 422
              F  +   + A ++  +M
Sbjct: 498 IDGFCKNKRIEEAEEIFDEM 517



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 84/376 (22%), Positives = 158/376 (42%), Gaps = 24/376 (6%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  LI   C L +V  A++++ QM+  +  P+T T N+++    +  +      +
Sbjct: 349 PDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATEL 408

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
             ++    + P+  TF S+I       +   A  L +++K     P    YN ++     
Sbjct: 409 ARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCS 468

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYV 185
           +  ++ AL +LKEME +    +  T++ LI   C N+  E+  + +++++  G       
Sbjct: 469 RGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVT 528

Query: 186 FMALINAYTTCGEFEKARQVVLDAEI--PVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
           +  LI+        E+A Q ++D  +   +K      ++L++     G    A  + + +
Sbjct: 529 YNTLIDGLCKNRRVEEAAQ-LMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTM 587

Query: 244 KEAGCNLEPRAVI--ALIEHLNSEG------ELNRLIQLLEEVHDPDYWMDGCCRLILHC 295
              GC  EP +V    LI  L+  G       L R +QL   V  P  +      +I   
Sbjct: 588 TSNGC--EPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNP----VIKAL 641

Query: 296 VRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDEL 355
            R K+ S A  L +++ +K  D   A+ Y    +F  + +   P +   +D L  + D+ 
Sbjct: 642 FREKRTSEAVRLFREMMEK-GDPPDAVTYKV--VFRGLCSGGGP-IGEAVDFLVEMTDKG 697

Query: 356 GLPPSRKCLDFLLGAC 371
            LP     L    G C
Sbjct: 698 FLPDFSSFLMLAEGLC 713



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 82/453 (18%), Positives = 178/453 (39%), Gaps = 57/453 (12%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  L+    D  K+ +   V  +MV   + P   T N ++ A   +++      +   +
Sbjct: 178 TYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEM 237

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
             + L P+ +TF +++   ++  + + A  + + +       +    N ++ GY ++  +
Sbjct: 238 GSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRI 297

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMAL 189
           +  L  + EM     +PD  TF+ L++      + +  ++  + +   G     + + +L
Sbjct: 298 EEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSL 357

Query: 190 INAYTTCGEFEKARQVV-----------------LDAEIPVKSRSEVKSALVSALASHGR 232
           I      GE E+A +++                 L + +  +++ E  + L   L S G 
Sbjct: 358 IFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGI 417

Query: 233 TSD-------------------AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQ 273
             D                   A+ ++EE+K  GC+ +      LI+ L S G L   + 
Sbjct: 418 LPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALS 477

Query: 274 LLEEVHDPDYWMDGCCR-------LILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHF 326
           LL+E+        GC R       LI    + K++  A ++  +++ +     +      
Sbjct: 478 LLKEMES-----SGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTL 532

Query: 327 SEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKE 386
            +  C+    +     +   L++      GL P +   + LL     A D+K+A  I + 
Sbjct: 533 IDGLCKNRRVEEAAQLMDQMLME------GLKPDKFTYNSLLTYFCRAGDIKKAADIVQT 586

Query: 387 YENAGLPYNVLSYLWMYKAFLASGNRKSASKLL 419
             + G   + ++Y  +      +G  + AS+LL
Sbjct: 587 MTSNGCEPDSVTYGTLILGLSKAGRVELASRLL 619


>gi|255660902|gb|ACU25620.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 484

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 142/333 (42%), Gaps = 32/333 (9%)

Query: 36  QMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIK 95
           +M+   + P+  T N ++     S +     R +  +    + P+  T+ +MI+   ++K
Sbjct: 140 KMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVK 199

Query: 96  DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFS 155
             + A     ++K  N+ PT   Y  ++ GY     V  AL +++EM+   +KP++ T+S
Sbjct: 200 KMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYS 259

Query: 156 YLIHNCSNEEDIIKYYEQLKSAGGQITKY-------VFMALINAYTTCGEFEKARQVVLD 208
            L+    N E + +    LK     + KY       +FM LI++    G  + A   VL 
Sbjct: 260 TLLPGLCNAEKMTEARSILKE---MMDKYLAPTDNSIFMRLISSQCNSGNLDAAAD-VLK 315

Query: 209 AEIPVKSRSEVK--SALVSALASHGRTSDAIIVYEEIKE--------AGCNLEPRAVIAL 258
           A I +   +E      L+      G+   A+ + +++ E        +  +LEP A   +
Sbjct: 316 AMIRLSVPTEAGHYGVLIENFCKAGQYDQAVKLLDKLIEKDIILRPQSTLHLEPSAYNPM 375

Query: 259 IEHLNSEGELNRLIQLLEE-----VHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKD 313
           IE+L + G+  +   L+ +     V DP         LI    +     SA +LLK +  
Sbjct: 376 IEYLCNNGQAAKAEALVRQLLKLGVQDP----TALNTLIRGHSQEGSPDSAFELLKIMLR 431

Query: 314 KFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLD 346
           +  D E +   + S +   +   +P D +  LD
Sbjct: 432 RKVDSEKSA--YNSLVQSYLKKNEPADAKAALD 462



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/288 (20%), Positives = 127/288 (44%), Gaps = 24/288 (8%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P+  ++  +I       KV  A    E M   E+ P   T N++++      +     
Sbjct: 146 IEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAE 205

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           + +  +   N++P   T+ ++I   V +   D A  L++++K   + P A  Y+ ++ G 
Sbjct: 206 KYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGL 265

Query: 127 FRKKDVQGALMVLKEMEQANVKP-DSQTFSYLIH------NCSNEEDIIKYYEQLK--SA 177
              + +  A  +LKEM    + P D+  F  LI       N     D++K   +L   + 
Sbjct: 266 CNAEKMTEARSILKEMMDKYLAPTDNSIFMRLISSQCNSGNLDAAADVLKAMIRLSVPTE 325

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQV---VLDAEIPVKSRSEVK------SALVSALA 228
            G      +  LI  +   G++++A ++   +++ +I ++ +S +       + ++  L 
Sbjct: 326 AGH-----YGVLIENFCKAGQYDQAVKLLDKLIEKDIILRPQSTLHLEPSAYNPMIEYLC 380

Query: 229 SHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276
           ++G+ + A  +  ++ + G   +P A+  LI   + EG  +   +LL+
Sbjct: 381 NNGQAAKAEALVRQLLKLGVQ-DPTALNTLIRGHSQEGSPDSAFELLK 427


>gi|222617300|gb|EEE53432.1| hypothetical protein OsJ_36514 [Oryza sativa Japonica Group]
          Length = 607

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 107/222 (48%), Gaps = 5/222 (2%)

Query: 31  LDVVEQMVQGELVPSTETINSILHAC-EESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           + V+E M    L P+T + N+++ AC +   +       +  +    L P+ +TF S+++
Sbjct: 1   MGVLESMKGAGLRPTTVSYNAVIDACGKGGVDLRFTLGYFRQMLKDGLCPDRKTFNSLLA 60

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              ++   + A ++ D++  + +      YN  +    +  +++ A+ VL +ME   VKP
Sbjct: 61  ACSRVGHLEDARAVFDEMIHLGIGRDIYTYNTFIDAICKCGNMELAMQVLLDMEAKGVKP 120

Query: 150 DSQTFSYLIHNCS---NEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           +  T+S LI   S     E+ +K  E++KS   Q+ +  +  L+  Y   G++ +   V 
Sbjct: 121 NVVTYSTLIDGYSKLEKYEEALKLCEKMKSMRIQLDRVCYNTLLAIYVKAGKYAEIANVC 180

Query: 207 LDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
            +  E+ ++  +   ++L++     GR     I+ +++++ G
Sbjct: 181 DEMEELGIEKDTVTYNSLINGYGKQGRLDIVSILVQDMRKRG 222



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 124/282 (43%), Gaps = 11/282 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHV--ALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           + P++ SY  +I  +C    V +   L    QM++  L P  +T NS+L AC        
Sbjct: 12  LRPTTVSYNAVID-ACGKGGVDLRFTLGYFRQMLKDGLCPDRKTFNSLLAACSRVGHLED 70

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
            R ++  + H  +  +  T+ + I    K  + + A  +L D++   + P    Y+ ++ 
Sbjct: 71  ARAVFDEMIHLGIGRDIYTYNTFIDAICKCGNMELAMQVLLDMEAKGVKPNVVTYSTLID 130

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQI 181
           GY + +  + AL + ++M+   ++ D   ++ L+          +I    ++++  G + 
Sbjct: 131 GYSKLEKYEEALKLCEKMKSMRIQLDRVCYNTLLAIYVKAGKYAEIANVCDEMEELGIEK 190

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
               + +LIN Y   G  +    +V D  +  V       S L+   +  G   DA  VY
Sbjct: 191 DTVTYNSLINGYGKQGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYSKAGMHGDAFNVY 250

Query: 241 EEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHD 280
            + KE+G  L+P  V+  + I+ L   G +   + LL ++ +
Sbjct: 251 LDFKESG--LKPDVVLFSSFIDTLAKNGLIEWALSLLNDMTE 290



 Score = 45.1 bits (105), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 83/220 (37%), Gaps = 48/220 (21%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L I   + +Y  LI       ++ +   +V+ M +  + PS  T ++++    ++    
Sbjct: 185 ELGIEKDTVTYNSLINGYGKQGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYSKAGMHG 244

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               +Y       LKP+   F S I    K    + A SLL+D+ EM + P    YNAI+
Sbjct: 245 DAFNVYLDFKESGLKPDVVLFSSFIDTLAKNGLIEWALSLLNDMTEMGIKPNVVTYNAII 304

Query: 124 AGYFRKK---------------DVQGALMV------------------------------ 138
             + + K                V G  +V                              
Sbjct: 305 DAFGKSKVMMEDDSEVGDMGIVGVYGGQIVRVANPVSRGGRSATDVRMRRSQELFFILEL 364

Query: 139 LKEMEQANVKPDSQTFSYLIHNCS---NEEDIIKYYEQLK 175
            ++M Q  V+P+  TFS +++ CS   + ED     EQL+
Sbjct: 365 FQKMVQQGVRPNVVTFSAILNACSRCNSFEDAALLLEQLR 404


>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
          Length = 1263

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 158/379 (41%), Gaps = 63/379 (16%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  +I   C + +V  AL++ ++M Q  +VP   + NS++    ++  F     ++  +
Sbjct: 462 AYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHM 521

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
             H  KPN  T    I+   K  +   A    + +K   ++P     NA++ G  +   +
Sbjct: 522 DIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRL 581

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINA 192
             A  V  E++   V PD+ T++ +I  CS      K+ E +K         +F  +I  
Sbjct: 582 GMAKRVFHELKAMGVSPDTITYTMMIKCCSKAS---KFDEAVK---------IFYDMIE- 628

Query: 193 YTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP 252
                        V D  + V S       L+  L   GR  +A  ++ ++KE   NLEP
Sbjct: 629 ----------NNCVPDV-LAVNS-------LIDTLYKAGRGDEAWRIFYQLKEM--NLEP 668

Query: 253 R--AVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC-RLILHCV-RFKQLSSATDLL 308
                  L+  L  EG++  ++ LLEE++  +Y  +      IL C+ +   ++ A D+L
Sbjct: 669 TDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDML 728

Query: 309 KQLKDKFKDDEMAM----------EYHFSE---IFCQIATTDPPD-----------VQIG 344
             +  K    +++           E  ++E   IFCQ+     PD           V+IG
Sbjct: 729 YSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKVLIPDYATLCTILPSFVKIG 788

Query: 345 L--DLLQFIKDELGLPPSR 361
           L  + L  IKD    P S+
Sbjct: 789 LMKEALHIIKDYFLQPGSK 807



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 78/385 (20%), Positives = 164/385 (42%), Gaps = 21/385 (5%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           ++ +A  V  ++    + P T T   ++  C ++ +F+   +I+  +  +N  P+     
Sbjct: 580 RLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVN 639

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           S+I    K    D A+ +   LKEMNL PT   YN ++AG  R+  V+  + +L+EM  +
Sbjct: 640 SLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHS 699

Query: 146 NVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
           N  P+  T++ ++   C N    D +     + + G       +  +I        + +A
Sbjct: 700 NYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEA 759

Query: 203 RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAI-IVYEEIKEAGCNLEPRAVIALIEH 261
             +    +  +         ++ +    G   +A+ I+ +   + G   +  +  +L+E 
Sbjct: 760 FSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEG 819

Query: 262 LNSEGELNRLIQLLEEVHDPDYWMDG--CCRLILHCVRFKQLSSATDLLKQLKDKFKDDE 319
           +  +  + + I+  E +      +D    C LI H  + K+   A +L+K    KFK   
Sbjct: 820 ILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVK----KFKSFG 875

Query: 320 MAMEYH-FSEIFCQIATTDPPDVQIGLDLLQFIK-DELGLPPSRKCLDFLLGACVNARDL 377
           ++++   ++ + C +   +  D+  GL    F +  ELG  P     + LL A   +  +
Sbjct: 876 VSLKTGLYNSLICGLVDENLIDIAEGL----FAEMKELGCGPDEFTYNLLLDAMGKSMRI 931

Query: 378 KRAHLIWKE-----YENAGLPYNVL 397
           +    + +E     YE+  + YN +
Sbjct: 932 EEMLKVQEEMHRKGYESTYVTYNTI 956



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/264 (19%), Positives = 112/264 (42%), Gaps = 8/264 (3%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           + ++P + +Y  +I       K   A+ +   M++   VP    +NS++    ++   + 
Sbjct: 594 MGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDE 653

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
             RI+  +   NL+P   T+ ++++   +         LL+++   N  P    YN I+ 
Sbjct: 654 AWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILD 713

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQI 181
              +   V  AL +L  M      PD  +++ +I+    EE   +    + Q+K     I
Sbjct: 714 CLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKV--LI 771

Query: 182 TKYVFM-ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAII 238
             Y  +  ++ ++   G  ++A  ++ D  +   S+++  S  +L+  +        +I 
Sbjct: 772 PDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIE 831

Query: 239 VYEEIKEAGCNLEPRAVIALIEHL 262
             E I  +G  L+   +  LI+HL
Sbjct: 832 FAEIIASSGITLDDFFLCPLIKHL 855



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/199 (19%), Positives = 85/199 (42%), Gaps = 3/199 (1%)

Query: 7    ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
             +P+  +Y  L+       ++  A ++  +M++     +    N +L+    +     V 
Sbjct: 981  FSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVC 1040

Query: 67   RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
             ++  +    + P+ +++  +I    K    +   +    L EM L P    YN ++ G 
Sbjct: 1041 HLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGL 1100

Query: 127  FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITK 183
             + K ++ A+ +  EM++  + P+  T++ LI          +  K YE+L + G +   
Sbjct: 1101 GKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNV 1160

Query: 184  YVFMALINAYTTCGEFEKA 202
            + + ALI  Y+  G  + A
Sbjct: 1161 FTYNALIRGYSVSGSTDSA 1179



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/251 (19%), Positives = 106/251 (42%), Gaps = 4/251 (1%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL+V   M+   +VPS  T + ++ A  +  +   V  +   +  H +KPN  ++   I 
Sbjct: 304 ALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIR 363

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  + K FD AY +L  ++     P    +  ++        +  A  V  +M++++ KP
Sbjct: 364 VLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKP 423

Query: 150 DSQTFSYLIHNCSNEED---IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D  T+  L+    +  D   +++ +  +K+ G       + A+I+A    G   +A ++ 
Sbjct: 424 DRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMF 483

Query: 207 LD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
            +  +  +       ++L+S      R  DA+ +++ +   G        +  I +    
Sbjct: 484 DEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKS 543

Query: 266 GELNRLIQLLE 276
           GE  + IQ  E
Sbjct: 544 GESIKAIQRYE 554



 Score = 45.8 bits (107), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 51/269 (18%), Positives = 106/269 (39%), Gaps = 8/269 (2%)

Query: 4    KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
            +L   P   +Y  L+      +++   L V E+M +     +  T N+I+    +S    
Sbjct: 908  ELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLE 967

Query: 64   LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
                +Y  +      P   T+  ++   +K    + A +L +++ E       ++YN ++
Sbjct: 968  QAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILL 1027

Query: 124  AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQ 180
             G+    + +    + ++M    + PD ++++ +I          D + Y+ QL   G +
Sbjct: 1028 NGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLE 1087

Query: 181  ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKS---RSEVKSALVSALASHGRTSDAI 237
                 +  LI+        E+A  V L  E+  K         ++L+  L   G+ ++A 
Sbjct: 1088 PDLITYNLLIDGLGKSKRLEEA--VSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAG 1145

Query: 238  IVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
             +YEE+   G         ALI   +  G
Sbjct: 1146 KMYEELLTKGWKPNVFTYNALIRGYSVSG 1174



 Score = 45.4 bits (106), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 98/239 (41%), Gaps = 10/239 (4%)

Query: 84   FRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME 143
            + S+I   V     D A  L  ++KE+   P    YN ++    +   ++  L V +EM 
Sbjct: 883  YNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMH 942

Query: 144  QANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFE 200
            +   +    T++ +I         E  I  Y  L S G   T   +  L++     G  E
Sbjct: 943  RKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIE 1002

Query: 201  KARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALI 259
             A  +  +  E   K+   + + L++     G T     +++++ + G N + ++   +I
Sbjct: 1003 DAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIII 1062

Query: 260  EHLNSEGELNRLI----QLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDK 314
            + L   G+LN  +    QLLE   +PD        LI    + K+L  A  L  +++ K
Sbjct: 1063 DTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNL--LIDGLGKSKRLEEAVSLFNEMQKK 1119



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 49/259 (18%), Positives = 112/259 (43%), Gaps = 9/259 (3%)

Query: 29  VALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
           VAL V   M +  +V +  T N +++   +S        +Y ++    + P+  T+  ++
Sbjct: 271 VALPV---MKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLM 327

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
               K +D ++   LL +++   + P    Y   +    + K    A  +L +ME    K
Sbjct: 328 VAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCK 387

Query: 149 PDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
           PD  T + LI    +     D    + ++K +  +  +  ++ L++ +   G+ +   ++
Sbjct: 388 PDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEI 447

Query: 206 VLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
               +    + + V  +A++ AL   GR  +A+ +++E+K+ G   E  +  +LI     
Sbjct: 448 WNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLK 507

Query: 265 EGELNRLIQLLE--EVHDP 281
                  ++L +  ++H P
Sbjct: 508 ADRFGDALELFKHMDIHGP 526



 Score = 38.5 bits (88), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 47/244 (19%), Positives = 99/244 (40%), Gaps = 6/244 (2%)

Query: 45  STETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS-LNVKIKDFDSAYSL 103
           +T + N +L           +  ++ ++    +K N  TF ++   L V+     SA   
Sbjct: 214 TTASCNYMLELMRGHGRVGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVE-GGLRSAPVA 272

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163
           L  +KE  ++  A  YN ++    +    + AL V + M    V P  +T+S L+     
Sbjct: 273 LPVMKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGK 332

Query: 164 EED---IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEV 219
             D   ++    ++++ G +   Y +   I        F++A +++   E    K     
Sbjct: 333 RRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVIT 392

Query: 220 KSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279
            + L+  L   GR SDA  V+ ++K++    +    I L++     G+   ++++   + 
Sbjct: 393 HTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMK 452

Query: 280 DPDY 283
              Y
Sbjct: 453 ADGY 456


>gi|110288710|gb|AAP52447.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215694798|dbj|BAG89989.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 735

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/283 (19%), Positives = 116/283 (40%), Gaps = 14/283 (4%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P   T N +L  C  S +F+   ++  ++    LKP+ + + ++IS   K    D+ + +
Sbjct: 105 PKMSTFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEV 164

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163
             ++    + P  + Y+A++ G  +   V  A      M    VKPD   F+ LI  C  
Sbjct: 165 FHEMVSAGIEPNVNTYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACGE 224

Query: 164 EEDIIKYYEQLKSAGGQITK-----------YVFMALINAYTTCGEFEKARQVV-LDAEI 211
              + + ++ L     + ++               AL+      G+ ++AR+V  +  E 
Sbjct: 225 SGAVARAFDVLSEMTAEASESKGSKPILPDHVTVGALMKTCIQAGQADRAREVYKMLQEY 284

Query: 212 PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRL 271
            +K   EV +  + + +  G    A+ +YE++ + G   +   + AL++        +  
Sbjct: 285 NIKGTPEVYTIALRSCSLTGDLGFALKIYEDMNKIGVQPDEMFLSALVDVAGHARRADAA 344

Query: 272 IQLLEEVHDPDYWMDGCC--RLILHCVRFKQLSSATDLLKQLK 312
            +++++     Y +       L+  C   K    A  L +++K
Sbjct: 345 FEIMKDARAKGYQVGTIAYSSLMGACCNAKDWKKALQLFEEIK 387



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/267 (20%), Positives = 117/267 (43%), Gaps = 16/267 (5%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMV------QGE--LVPSTETINSILHACE 57
           ++ P    +  LI+   +   V  A DV+ +M       +G   ++P   T+ +++  C 
Sbjct: 207 KVKPDRVVFNALISACGESGAVARAFDVLSEMTAEASESKGSKPILPDHVTVGALMKTCI 266

Query: 58  ESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTAS 117
           ++ + +  R +Y M+  +N+K   E +   +       D   A  + +D+ ++ + P   
Sbjct: 267 QAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYEDMNKIGVQPDEM 326

Query: 118 MYNAI--MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKYYE 172
             +A+  +AG+ R+ D   A  ++K+      +  +  +S L+  C N +D    ++ +E
Sbjct: 327 FLSALVDVAGHARRADA--AFEIMKDARAKGYQVGTIAYSSLMGACCNAKDWKKALQLFE 384

Query: 173 QLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHG 231
           ++KS     T  +  ALI A     +  K+ +V+ + + + V       S L  A   + 
Sbjct: 385 EIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKRLGVCPNMITYSVLFVACERNA 444

Query: 232 RTSDAIIVYEEIKEAGCNLEPRAVIAL 258
                + ++E++K    +L P  V  L
Sbjct: 445 EAQLGLDLFEQLKIDSIDLNPTIVGCL 471


>gi|85000739|ref|XP_955088.1| hypothetical protein [Theileria annulata strain Ankara]
 gi|65303234|emb|CAI75612.1| hypothetical protein, conserved [Theileria annulata]
          Length = 559

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/276 (21%), Positives = 127/276 (46%), Gaps = 17/276 (6%)

Query: 7   ITPSSASYKKLITYSC------DLLKVHVALDVVEQMVQ-GELVPSTETINSILHACEES 59
           +T S+ +    I Y C      +   V  A+ + E M + G++ P+T    +++    ++
Sbjct: 165 VTVSNGANNSEIVYGCMFDAYVNNNSVDSAMRLFEDMKERGKVKPNTIMYTTLIKGYGQN 224

Query: 60  YEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMY 119
            + +   RI+ ++    ++PN+ T+ S+I    ++ +  SA  LL+++    + P    +
Sbjct: 225 KQLDKAMRIFRLMQQDGVEPNTVTYNSIIDACARVGEMGSATRLLEEMLSSGIEPDLITF 284

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKS 176
           + I+ GY  + D+  +  +L  M +  + PD   ++ L+  C     +    K + Q++ 
Sbjct: 285 STIIKGYCVQSDMDKSFQLLSVMYERGIMPDVILYNSLLEGCVKSGLLWLCEKLWSQMQE 344

Query: 177 AGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKS----RSEVKSALVSALASHGR 232
                + +    LI  Y   G+ +K  +  L  E+P +      + V + L+SA  ++GR
Sbjct: 345 YNIPPSNFTLTILIKMYGRSGQLDKVFE--LADELPKRYNFSINTHVYTCLMSACITNGR 402

Query: 233 TSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGEL 268
            +  + +Y+ +K  G   + +    +I+ L S G L
Sbjct: 403 YAMVLDIYKYMKINGVKPDAKTFETIIQGL-SRGSL 437



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 90/203 (44%), Gaps = 4/203 (1%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M  + ++ P++  Y  LI       ++  A+ +   M Q  + P+T T NSI+ AC    
Sbjct: 201 MKERGKVKPNTIMYTTLIKGYGQNKQLDKAMRIFRLMQQDGVEPNTVTYNSIIDACARVG 260

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           E     R+   +    ++P+  TF ++I       D D ++ LL  + E  +MP   +YN
Sbjct: 261 EMGSATRLLEEMLSSGIEPDLITFSTIIKGYCVQSDMDKSFQLLSVMYERGIMPDVILYN 320

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQL----KS 176
           +++ G  +   +     +  +M++ N+ P + T + LI        + K +E      K 
Sbjct: 321 SLLEGCVKSGLLWLCEKLWSQMQEYNIPPSNFTLTILIKMYGRSGQLDKVFELADELPKR 380

Query: 177 AGGQITKYVFMALINAYTTCGEF 199
               I  +V+  L++A  T G +
Sbjct: 381 YNFSINTHVYTCLMSACITNGRY 403


>gi|296083841|emb|CBI24229.3| unnamed protein product [Vitis vinifera]
          Length = 547

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 129/280 (46%), Gaps = 40/280 (14%)

Query: 31  LDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL 90
           +++  +M +  + P+  T++SIL AC  S    L + I+  I  + ++ +     S+I L
Sbjct: 197 IELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDL 256

Query: 91  NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD 150
             K  +  SA ++  ++ + N++     +N +++GY +      AL++  +M +A VKPD
Sbjct: 257 YFKCGNIGSAENVFQNMPKTNVVS----WNVMISGYVKVGSYLEALVIFTDMRKAGVKPD 312

Query: 151 SQTFSYLIHNCSNEEDIIK------------------YYEQLKSAGGQITKYVFMALINA 192
           + TF+ ++  CS    + K                   +E+++ +  +  K  F+A+++A
Sbjct: 313 AITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVLFEKMQQSDAKPDKVTFLAILSA 372

Query: 193 YTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC 248
            +  G  ++      Q++  AE   K   E  S L+  L   GR  +A   YE ++    
Sbjct: 373 CSHAGLVDEGCYYFNQMI--AEYGFKPAVEHYSCLIDLLGRVGRLREA---YEILQRTP- 426

Query: 249 NLEPRAVIALIEHLNSEGELNRLIQLLEEV------HDPD 282
             + R  + L+  L S   L++ + L E++       DPD
Sbjct: 427 --DIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPD 464



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/234 (19%), Positives = 108/234 (46%), Gaps = 22/234 (9%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL++ E+M      P + T+ +++ +C    +    + I+  +       +     +++ 
Sbjct: 95  ALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVD 154

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K    + A  + + ++  N++     +N+++AGY  K D +  + + + M++  ++P
Sbjct: 155 MYGKCGCLEMAKEVFEQIQRKNVVS----WNSMIAGYSLKGDSKSCIELFRRMDEEGIRP 210

Query: 150 DSQTFSYLIHNCSNEEDIIKYYEQL-KSAGGQITK-------YVFMALINAYTTCGEFEK 201
              T S ++  CS   ++     QL K   G I +       +V  +LI+ Y  CG    
Sbjct: 211 TLTTLSSILMACSRSVNL-----QLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGS 265

Query: 202 ARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255
           A  V  +  +P K+     + ++S     G   +A++++ ++++AG  ++P A+
Sbjct: 266 AENVFQN--MP-KTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAG--VKPDAI 314


>gi|334184678|ref|NP_180987.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546770|sp|O64705.2|PP184_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g34400
 gi|330253874|gb|AEC08968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 124/266 (46%), Gaps = 15/266 (5%)

Query: 9   PSSASYKKLITYSCDLLKVH-VALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           P+  S+  +I    +    H  AL +  +M    L P   T N +  AC +  E  + R 
Sbjct: 94  PNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRS 153

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           ++  +    L+ +     S+I +  K      A  L D++ E + +     +N++++GY 
Sbjct: 154 VHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVS----WNSMISGYS 209

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI--IKYYEQL---KSAGGQIT 182
                + A+ + ++ME+   +PD +T   ++  CS+  D+   +  E++   K  G  ++
Sbjct: 210 EAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIG--LS 267

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
            ++   LI+ Y  CG+ + AR+V       +K      +A+++  + +G++S+A  ++ E
Sbjct: 268 TFLGSKLISMYGKCGDLDSARRVFNQM---IKKDRVAWTAMITVYSQNGKSSEAFKLFFE 324

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGEL 268
           +++ G + +   +  ++    S G L
Sbjct: 325 MEKTGVSPDAGTLSTVLSACGSVGAL 350



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 108/222 (48%), Gaps = 20/222 (9%)

Query: 63  NLVRRIYP-MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
           N +R+I   M+ H   KPN      +I   V++ DF+ +  L    +E    P    +N 
Sbjct: 51  NQLRQIQAQMLLHSVEKPNF-----LIPKAVELGDFNYSSFLFSVTEE----PNHYSFNY 101

Query: 122 IMAGYFRK-KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSA 177
           ++ G      D + AL + + M+ + +KPD  T++++   C+  E+I      +  L   
Sbjct: 102 MIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKV 161

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDA 236
           G +   ++  +LI  Y  CG+   AR++  +    +  R  V  ++++S  +  G   DA
Sbjct: 162 GLERDVHINHSLIMMYAKCGQVGYARKLFDE----ITERDTVSWNSMISGYSEAGYAKDA 217

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           + ++ +++E G   + R +++++   +  G+L R  +LLEE+
Sbjct: 218 MDLFRKMEEEGFEPDERTLVSMLGACSHLGDL-RTGRLLEEM 258


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 112/249 (44%), Gaps = 18/249 (7%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +IT    + +   A+    +M + ++ P+  T  +++  C          +++ +I
Sbjct: 285 SWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALI 344

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
            H  L  +     S++++  K     S+  +  ++   +++     ++ I+AGY +   V
Sbjct: 345 LHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVS----WSTIIAGYXQGGHV 400

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK----SAGGQITKYVFMA 188
             A  +L  M     KP     + ++  C N   I+++ +QL     S G + T  V  A
Sbjct: 401 SEAFELLSWMRMEGPKPTEFALASVLSACGNMA-ILEHGKQLHAYVLSIGLEHTAMVLSA 459

Query: 189 LINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEIKEA 246
           LIN Y  CG  E+A ++   AE       ++ S  A+++  A HG + + I ++E+I   
Sbjct: 460 LINMYCKCGSIEEASRIFDAAE-----NDDIVSWTAMINGYAEHGYSREVIDLFEKIPRV 514

Query: 247 GCNLEPRAV 255
           G  L P +V
Sbjct: 515 G--LRPDSV 521


>gi|297736961|emb|CBI26162.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/284 (20%), Positives = 119/284 (41%), Gaps = 12/284 (4%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEE---SY 60
           + +  S A++  ++  S    ++    ++  +MV+  +V    T+  ++ A C+E   S 
Sbjct: 221 IGVCASIATWNSVLRGSVRAGRIDFVWELYGEMVESSVVADVHTVGYLVQAFCDENRISD 280

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
             NL+RR+        + P +  F  +IS   K K +     LL  +   N  P    Y 
Sbjct: 281 GHNLLRRVL----EDGVVPRNAAFNKLISGFCKDKAYGRVSDLLHSMIARNRAPDIFTYQ 336

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE---DIIKYYEQLKSA 177
            ++ G  +         V K+++     PD   ++ +IH     +   D  K + ++   
Sbjct: 337 EVVNGLCKGGKGPEGFRVFKDLKDRGYAPDRVMYTTMIHGLCRMKWLGDARKLWFEMIQK 396

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDA 236
           G    +Y + A+I+ Y   G  E+A ++  +  +     ++   + ++  L SHG+  +A
Sbjct: 397 GFLPNEYTYNAMIHGYFKIGNLEEAWKMYREMCDKGYGEKTVSYNVMIKGLCSHGKIKEA 456

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
             ++EE+   G         AL+     EG++     LL E+ D
Sbjct: 457 HDLFEEMSHKGILRNHITYNALVRGFCKEGKIVEGANLLYELLD 500



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/287 (18%), Positives = 116/287 (40%), Gaps = 13/287 (4%)

Query: 17  LITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHN 76
           L+   CD  ++    +++ ++++  +VP     N ++    +   +  V  +   +   N
Sbjct: 268 LVQAFCDENRISDGHNLLRRVLEDGVVPRNAAFNKLISGFCKDKAYGRVSDLLHSMIARN 327

Query: 77  LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGAL 136
             P+  T++ +++   K       + +  DLK+    P   MY  ++ G  R K +  A 
Sbjct: 328 RAPDIFTYQEVVNGLCKGGKGPEGFRVFKDLKDRGYAPDRVMYTTMIHGLCRMKWLGDAR 387

Query: 137 MVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAY 193
            +  EM Q    P+  T++ +IH      N E+  K Y ++   G       +  +I   
Sbjct: 388 KLWFEMIQKGFLPNEYTYNAMIHGYFKIGNLEEAWKMYREMCDKGYGEKTVSYNVMIKGL 447

Query: 194 TTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEP 252
            + G+ ++A  +  +       R+ +  +ALV      G+  +   +  E+ + G     
Sbjct: 448 CSHGKIKEAHDLFEEMSHKGILRNHITYNALVRGFCKEGKIVEGANLLYELLDQGIQPSA 507

Query: 253 RAVIALIEHLNSEGELNRLIQLLEEVHDP---------DYWMDGCCR 290
            +   LI+ L  EG++     L +++ +          D+ + G C+
Sbjct: 508 ASYAPLIDKLCQEGDMQNAKILWDDMQNRGMEPAVCTHDFMITGFCK 554



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 50/267 (18%), Positives = 115/267 (43%), Gaps = 8/267 (2%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
            P    Y  +I   C +  +  A  +  +M+Q   +P+  T N+++H   +        +
Sbjct: 364 APDRVMYTTMIHGLCRMKWLGDARKLWFEMIQKGFLPNEYTYNAMIHGYFKIGNLEEAWK 423

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +Y  +C       + ++  MI           A+ L +++    ++     YNA++ G+ 
Sbjct: 424 MYREMCDKGYGEKTVSYNVMIKGLCSHGKIKEAHDLFEEMSHKGILRNHITYNALVRGFC 483

Query: 128 RK-KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITK 183
           ++ K V+GA ++ + ++Q  ++P + +++ LI     E D+      ++ +++ G +   
Sbjct: 484 KEGKIVEGANLLYELLDQG-IQPSAASYAPLIDKLCQEGDMQNAKILWDDMQNRGMEPAV 542

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYE 241
                +I  +   G   +  +  L   +  K R + KS  +L+  L+   R  DA++V +
Sbjct: 543 CTHDFMITGFCKQGCAMEGME-WLTTMLRSKLRPQKKSFESLIQCLSQIDRLDDALLVLD 601

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGEL 268
            + + G  L      +L+  L  +  L
Sbjct: 602 SMLKIGFRLSISICNSLVTKLCEKNSL 628


>gi|15233482|ref|NP_192346.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75214457|sp|Q9XE98.1|PP303_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g04370
 gi|4982476|gb|AAD36944.1|AF069441_4 hypothetical protein [Arabidopsis thaliana]
 gi|7267194|emb|CAB77905.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656985|gb|AEE82385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 122/269 (45%), Gaps = 33/269 (12%)

Query: 5   LEITPSS--ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           LE  P+     +  +I+    L +   AL V  +M+Q     S+E I S++ +C +   F
Sbjct: 303 LETIPNKDVVCWTVMISGLMRLGRAEKALIVFSEMLQSGSDLSSEAIASVVASCAQLGSF 362

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           +L   ++  +  H    ++    S+I++  K    D +  + + + E +L+     +NAI
Sbjct: 363 DLGASVHGYVLRHGYTLDTPALNSLITMYAKCGHLDKSLVIFERMNERDLVS----WNAI 418

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKP-DSQTFSYLIHNCSNEED----------IIKYY 171
           ++GY +  D+  AL++ +EM+   V+  DS T   L+  CS+             +I+ +
Sbjct: 419 ISGYAQNVDLCKALLLFEEMKFKTVQQVDSFTVVSLLQACSSAGALPVGKLIHCIVIRSF 478

Query: 172 EQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALAS 229
            +  S        V  AL++ Y+ CG  E A++          S  +V S   L++    
Sbjct: 479 IRPCS-------LVDTALVDMYSKCGYLEAAQRC-----FDSISWKDVVSWGILIAGYGF 526

Query: 230 HGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258
           HG+   A+ +Y E   +G  +EP  VI L
Sbjct: 527 HGKGDIALEIYSEFLHSG--MEPNHVIFL 553



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 86/187 (45%), Gaps = 10/187 (5%)

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           SM++L  K      A  L D +++ +++     +N +++GY    ++   L +L  M   
Sbjct: 184 SMLNLYCKCDHVGDAKDLFDQMEQRDMVS----WNTMISGYASVGNMSEILKLLYRMRGD 239

Query: 146 NVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
            ++PD QTF   +       D+      + Q+   G  +  ++  ALI  Y  CG+ E +
Sbjct: 240 GLRPDQQTFGASLSVSGTMCDLEMGRMLHCQIVKTGFDVDMHLKTALITMYLKCGKEEAS 299

Query: 203 RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
            +V+    IP K      + ++S L   GR   A+IV+ E+ ++G +L   A+ +++   
Sbjct: 300 YRVL--ETIPNKDVV-CWTVMISGLMRLGRAEKALIVFSEMLQSGSDLSSEAIASVVASC 356

Query: 263 NSEGELN 269
              G  +
Sbjct: 357 AQLGSFD 363


>gi|357493977|ref|XP_003617277.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518612|gb|AET00236.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 502

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 103/246 (41%), Gaps = 28/246 (11%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
            LKP   T+ ++I+   K   ++SA  +LD +  +   P A+ +N ++   FRK+DV  A
Sbjct: 136 GLKPGLFTYNALINGLCKEGGYESAKCVLDKMLGVGFCPDAATFNPVLVESFRKEDVWEA 195

Query: 136 LMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINA 192
             V  EM Q  V PD  +FS +I   S   ++   + Y+E++K  G      ++  LIN 
Sbjct: 196 ERVFNEMLQCGVVPDLISFSSIIGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILING 255

Query: 193 YTTCGEFEKA---------RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
           Y    +   A         R  V+D            + L++ L       DA  +++E+
Sbjct: 256 YCRNNDVSGALKVRNEMVERSCVMDV--------VTYNTLLNGLCRGKMLDDADELFKEM 307

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV-------HDPDYWMDGCCRLIL-HC 295
            E G   +   +  LI     +G + + + L E +          + W D   R I  H 
Sbjct: 308 VERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETITLRSEMEKAKELWRDMISREIFPHY 367

Query: 296 VRFKQL 301
           + F  L
Sbjct: 368 ISFSIL 373



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 103/278 (37%), Gaps = 61/278 (21%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M AK  + P   +Y  LI   C       A  V+++M+     P   T N +L       
Sbjct: 132 MEAK-GLKPGLFTYNALINGLCKEGGYESAKCVLDKMLGVGFCPDAATFNPVLVESFRKE 190

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
           +     R++  +    + P+  +F S+I +  +  +   A +  + +K + L+P   +Y 
Sbjct: 191 DVWEAERVFNEMLQCGVVPDLISFSSIIGVFSRNGELGRALAYFEKMKGVGLVPDTVIYT 250

Query: 121 AIMAGYFRKKDVQGALMV-----------------------------------LKEMEQA 145
            ++ GY R  DV GAL V                                    KEM + 
Sbjct: 251 ILINGYCRNNDVSGALKVRNEMVERSCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVER 310

Query: 146 NVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
            V PD  T + LIH    +              G +TK   ++L    T   E EKA+++
Sbjct: 311 GVFPDFYTLTTLIHGYCKD--------------GNMTKA--LSLFETITLRSEMEKAKEL 354

Query: 206 VLDAEIPVKSRSEVK-----SALVSALASHGRTSDAII 238
             D    + SR         S L++   S G  S+++I
Sbjct: 355 WRD----MISREIFPHYISFSILINGFCSLGLVSESLI 388



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 33/56 (58%)

Query: 112 LMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI 167
           L+P    YNAI+ G+ R   +Q A MVL +M    + PD  T++ +I+   +++++
Sbjct: 426 LLPDLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSVINGYVSKDNM 481


>gi|326497659|dbj|BAK05919.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 523

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/276 (20%), Positives = 121/276 (43%), Gaps = 5/276 (1%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGE-LVPSTETINSILHACEESYEFNL 64
           ++ P+  +Y  L+   C   K+  A ++ E M++ + +VP   T N I+       +   
Sbjct: 242 DVRPNLVTYSTLLGGLCRAGKMKEAFELFEGMIEKDHIVPDQLTYNVIIDGFCRLGQVEK 301

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
            R I+  +  +  +PN+  + ++I+ + K  D ++A  + ++++   + P A  Y A++ 
Sbjct: 302 ARTIFGFMRKNECEPNAFNYATLINGHCKKGDVENAKLVFEEMRSAGVEPDAVSYTALIG 361

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQI 181
              R   V   + ++ EM +   K D  T++ L+     +    +++    +L   G Q+
Sbjct: 362 CLCRHGSVDEGIDLVMEMREKGCKADVVTYNLLLEGLCKDGRMAEVMDLLGRLPEEGVQL 421

Query: 182 TKYVFMALINAYTTCGEFEKA-RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
               +  ++N   + G+ EKA   + L             + L+  L   GR +DA    
Sbjct: 422 NVASYRIVMNTLCSSGDMEKAVGLLGLMLGRGFLPHYAASNKLLIGLCDVGRVADATAAL 481

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276
             + + G   E      LIE +  + +L R ++LL+
Sbjct: 482 YGLAKFGFMPEASCWAKLIEAVCRDRKLRRSVELLD 517



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 96/205 (46%), Gaps = 8/205 (3%)

Query: 79  PNSETFRSMISLNVKIKDFDSAYSLLDDLKEM---NLMPTASMYNAIMAGYFRKKDVQGA 135
           PN+  +  +I   VK  D ++A+ +LD+++E    ++ P    Y+ ++ G  R   ++ A
Sbjct: 207 PNTCVYNILIKHYVKNGDSETAFRVLDEMREYTCGDVRPNLVTYSTLLGGLCRAGKMKEA 266

Query: 136 LMVLKEM-EQANVKPDSQTFSYLIHN-C--SNEEDIIKYYEQLKSAGGQITKYVFMALIN 191
             + + M E+ ++ PD  T++ +I   C     E     +  ++    +   + +  LIN
Sbjct: 267 FELFEGMIEKDHIVPDQLTYNVIIDGFCRLGQVEKARTIFGFMRKNECEPNAFNYATLIN 326

Query: 192 AYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNL 250
            +   G+ E A+ V  +     V+  +   +AL+  L  HG   + I +  E++E GC  
Sbjct: 327 GHCKKGDVENAKLVFEEMRSAGVEPDAVSYTALIGCLCRHGSVDEGIDLVMEMREKGCKA 386

Query: 251 EPRAVIALIEHLNSEGELNRLIQLL 275
           +      L+E L  +G +  ++ LL
Sbjct: 387 DVVTYNLLLEGLCKDGRMAEVMDLL 411



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 89/196 (45%), Gaps = 29/196 (14%)

Query: 104 LDDLKEMNL-MPTASMYNAIMAGYFRKKDVQGALMVLKEMEQ---ANVKPDSQTFSYLIH 159
           L DL+   L  P   +YN ++  Y +  D + A  VL EM +    +V+P+  T+S L+ 
Sbjct: 196 LRDLRNKYLPAPNTCVYNILIKHYVKNGDSETAFRVLDEMREYTCGDVRPNLVTYSTLLG 255

Query: 160 NCSNEEDIIKYYEQLKSAGGQITK-------YVFMALINAYTTCGEFEKARQVVLDAEIP 212
                  + + +E  +   G I K         +  +I+ +   G+ EKAR +       
Sbjct: 256 GLCRAGKMKEAFELFE---GMIEKDHIVPDQLTYNVIIDGFCRLGQVEKARTI-----FG 307

Query: 213 VKSRSEVK------SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV--IALIEHLNS 264
              ++E +      + L++     G   +A +V+EE++ AG  +EP AV   ALI  L  
Sbjct: 308 FMRKNECEPNAFNYATLINGHCKKGDVENAKLVFEEMRSAG--VEPDAVSYTALIGCLCR 365

Query: 265 EGELNRLIQLLEEVHD 280
            G ++  I L+ E+ +
Sbjct: 366 HGSVDEGIDLVMEMRE 381


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/287 (21%), Positives = 123/287 (42%), Gaps = 8/287 (2%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +I P+  ++  LI       K+  A ++ ++M+   + P+T T NS++         +  
Sbjct: 270 KIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEA 329

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +  ++  +N  P+  TF S+I    K+K  D    L   + +  L+     Y+ ++ G
Sbjct: 330 NNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQG 389

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQIT 182
           + +   ++ A  + +EM    V PD  T+  L+   C N   E  ++ +E L+ +   + 
Sbjct: 390 FCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLD 449

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIP---VKSRSEVKSALVSALASHGRTSDAIIV 239
             ++  +I      G+ E A    L   +P   VK      + ++S L   G  S+A I+
Sbjct: 450 IVMYTIIIEGMCKGGKVEDAWN--LFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANIL 507

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
             +++E G          LI     +G+L    +L+EE+    +  D
Sbjct: 508 LRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSAD 554



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 89/473 (18%), Positives = 195/473 (41%), Gaps = 40/473 (8%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           KL   P + ++  LI   C   KV  A+ +V +MV+    P+  T NSI++   +S + +
Sbjct: 128 KLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTS 187

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
           L   +   +   N+K +  T+ ++I    +    D+A SL  +++   +  +   YN+++
Sbjct: 188 LALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLV 247

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQ 180
            G  +       + +LK+M    + P+  TF+ LI     E   ++  + Y+++ + G  
Sbjct: 248 GGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGIS 307

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK--SALVSALASHGRTSDAII 238
                + +L++ Y       +A   +LD  +      ++   ++L+       R  + + 
Sbjct: 308 PNTITYNSLMDGYCMQNRLSEANN-MLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMK 366

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYW-----MDGCC 289
           ++ +I + G          L++     G+L    +L +E+      PD       +DG C
Sbjct: 367 LFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLC 426

Query: 290 RLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQ 349
                     +L  A ++ + L+    + ++ M     E  C+        V+   +L  
Sbjct: 427 -------DNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCK-----GGKVEDAWNLFC 474

Query: 350 FIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLAS 409
            +  + G+ P+      ++        L  A+++ ++ E  G   N  +Y  + +A L  
Sbjct: 475 SLPCK-GVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRD 533

Query: 410 GNRKSASKLLSKM-----PKDDPHVRFVIQAC-------KQTYTIPSLQKERG 450
           G+  +++KL+ +M       D   ++ VI          K+    P +++ RG
Sbjct: 534 GDLTASAKLIEEMKSCGFSADASSIKMVIDMLSSAVWWFKEPRRSPGVKRFRG 586



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 84/442 (19%), Positives = 179/442 (40%), Gaps = 61/442 (13%)

Query: 30  ALDVVEQMVQGELVP-------------STETINSILHACEES---------YEFNLVRR 67
           A+D+ ++M++   +P             ST+  N +L  C++          Y  N++  
Sbjct: 49  AIDLFQEMIRSRPLPSLVDFSRFFSGVASTKQFNLVLDFCKKMELNGIAHNIYTLNIMIN 108

Query: 68  IYPMICHH-------------NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMP 114
            +   C                 +P++ TF ++I+          A  L+  + E    P
Sbjct: 109 CFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQP 168

Query: 115 TASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYY 171
               YN+I+ G  +  D   AL +L++M++ NVK D  T+S +I +   +  I   I  +
Sbjct: 169 NVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLF 228

Query: 172 EQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-----SALVSA 226
           +++++ G + +   + +L+      G++    Q++ D    + SR  +      + L+  
Sbjct: 229 KEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKD----MTSRKIIPNVITFNVLIDV 284

Query: 227 LASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL---NSEGELNRLIQLLEEVH-DPD 282
               G+  +A  +Y+E+   G +       +L++     N   E N ++ L+   +  PD
Sbjct: 285 FVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPD 344

Query: 283 YWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQ 342
                   LI    + K++     L +++  +             + FCQ        ++
Sbjct: 345 IVT--FTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQ-----SGKLE 397

Query: 343 IGLDLLQFIKDELGLPPSRKCLDFLL-GACVNARDLKRAHLIWKEYENAGLPYNVLSYLW 401
           I  +L Q +   LG+ P       LL G C N + L++A  I+++ + + +  +++ Y  
Sbjct: 398 IAEELFQEMV-SLGVLPDVMTYGILLDGLCDNGK-LEKALEIFEDLQKSKMNLDIVMYTI 455

Query: 402 MYKAFLASGNRKSASKLLSKMP 423
           + +     G  + A  L   +P
Sbjct: 456 IIEGMCKGGKVEDAWNLFCSLP 477


>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 583

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/223 (21%), Positives = 106/223 (47%), Gaps = 11/223 (4%)

Query: 36  QMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIK 95
           +M+   + PS  T  S++ +C +     + + ++          ++    ++++   K  
Sbjct: 97  RMLSSNVSPSNYTFTSVIKSCADLSALKIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCG 156

Query: 96  DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFS 155
           D ++A  + D + E +++     +N++++G+ +    + A+ V  +M ++  +PDS TF 
Sbjct: 157 DMEAARQVFDRMPEKSVVA----WNSLVSGFEQNGLAEDAIRVFYQMRESGFEPDSATFV 212

Query: 156 YLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIP 212
            L+  C+    I      ++ + S G  +   +  ALIN Y+ CG+  KAR+V    +  
Sbjct: 213 SLLSACAQTGAISLGSWVHQYIVSEGLDVNVKLGTALINLYSRCGDVGKAREVFDKMK-- 270

Query: 213 VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255
            ++     +A++SA  +HG    A+ ++ ++ E  C   P  V
Sbjct: 271 -ETNVAAWTAMISAYGTHGYGKQAVDLFNKM-EDDCGSIPNNV 311



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 118/278 (42%), Gaps = 17/278 (6%)

Query: 113 MPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---K 169
           +P   ++N+++    + +     +   + M  +NV P + TF+ +I +C++   +     
Sbjct: 69  LPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALKIGKG 128

Query: 170 YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALAS 229
            +     +G  +  YV  AL+  Y+ CG+ E ARQV     +P KS     S LVS    
Sbjct: 129 VHCHAVVSGFGLDTYVQAALVTFYSKCGDMEAARQVF--DRMPEKSVVAWNS-LVSGFEQ 185

Query: 230 HGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD--PDYWMDG 287
           +G   DAI V+ +++E+G   +    ++L+      G     I L   VH       +D 
Sbjct: 186 NGLAEDAIRVFYQMRESGFEPDSATFVSLLSACAQTGA----ISLGSWVHQYIVSEGLDV 241

Query: 288 CCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDL 347
             +L    +            +++ DK K+  +A    ++ +     T      +  +DL
Sbjct: 242 NVKLGTALINLYSRCGDVGKAREVFDKMKETNVAA---WTAMISAYGTHGYG--KQAVDL 296

Query: 348 LQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWK 385
              ++D+ G  P+      +L AC +A  ++    ++K
Sbjct: 297 FNKMEDDCGSIPNNVTFVAVLSACAHAGLVEDGRSVYK 334


>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
          Length = 479

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 99/220 (45%), Gaps = 14/220 (6%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           ++PS  SY  LI   C    +  A++++E+M+   + P+  T +S++    +S   +   
Sbjct: 222 LSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAM 281

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +  ++    L PN  T+ ++I+   K      A  +LD ++   L P A MY  I++G 
Sbjct: 282 ELLEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLKPDAGMYGRIISGL 341

Query: 127 FRKKDVQGALMVLKEMEQANVKPD--SQTFSYLIHN------CSNEEDI--IKYYEQLKS 176
               + Q A   + EM    + P+  S TF   +HN      C+N +     + Y  +++
Sbjct: 342 CAACNYQEAANFIDEMALGGISPNRASWTFHVKMHNMVVQGLCNNVDPTRAFQLYLSMRT 401

Query: 177 AGGQITKYVFMALINAYTTCGEFEKARQV----VLDAEIP 212
            G  +    F  L+  +   G+  KA ++    +LD  IP
Sbjct: 402 RGISVEIGTFDCLVKCFCKRGDLNKAARILEEMILDGCIP 441



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/322 (20%), Positives = 137/322 (42%), Gaps = 43/322 (13%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P S +Y  LI   C L K+  A +++++M +  L PS  +  S++H   +S   +    +
Sbjct: 189 PDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIEL 248

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +  + ++PN  T+ S++    K      A  LL+ +    L+P    Y+ ++ G  +
Sbjct: 249 LEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCK 308

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CS--NEEDIIKYYEQLKSAGGQITKYV 185
           +   + A+ +L  M    +KPD+  +  +I   C+  N ++   + +++   G    +  
Sbjct: 309 EGKHREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMALGGISPNRAS 368

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
           +   +  +                           + +V  L ++   + A  +Y  ++ 
Sbjct: 369 WTFHVKMH---------------------------NMVVQGLCNNVDPTRAFQLYLSMRT 401

Query: 246 AGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC-----RLILHCVRF-- 298
            G ++E      L++     G+LN+  ++LEE+      +DGC        +L C  +  
Sbjct: 402 RGISVEIGTFDCLVKCFCKRGDLNKAARILEEM-----ILDGCIPDEGMWNVLMCGLWDR 456

Query: 299 KQLSSATDLL-KQLKDKFKDDE 319
           K++   T+LL  +LK KF + E
Sbjct: 457 KKVRETTELLVAELKQKFVEAE 478



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 87/406 (21%), Positives = 156/406 (38%), Gaps = 67/406 (16%)

Query: 75  HNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQG 134
           +  + +  TF +MI   V +  F  A  +L+ +K+ +   T  ++  I  GY R      
Sbjct: 44  NGFRHDHNTFGAMIHRLVSVNQFRPAEGMLERMKQEDCEVTEDVFLTICRGYGRVHRPLD 103

Query: 135 ALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALIN 191
           A+ V  +ME   VKP  +++  +      E  +   I +Y++++  G   T      LI 
Sbjct: 104 AIRVFHKMEDFQVKPTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIK 163

Query: 192 AYTTCGEFEKARQVV-LDAEIPVKS---RSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247
           A   C   E       L  E+P +     S     L++ L   G+ S A  + +E++E G
Sbjct: 164 AL--CKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKG 221

Query: 248 CNLEPRAVIALIEHLNSEGELNRLIQLLEEV----HDPDYW-----MDGCC--------- 289
            +    +  +LI  L     L+  I+LLEE+     +P+ +     MDG C         
Sbjct: 222 LSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAM 281

Query: 290 ---------RLILHCVRFKQL----------SSATDLLKQLKDKFKDDEMAMEYHFSEIF 330
                    RL+ + V +  L            A ++L +++ +    +  M        
Sbjct: 282 ELLEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLKPDAGMYGRIISGL 341

Query: 331 CQIATTDPPDVQIGLDLLQFIKDEL---GLPPSRKCLDF--------LLGACVNARDLKR 379
           C              +   FI DE+   G+ P+R    F        + G C N  D  R
Sbjct: 342 CAACNYQ--------EAANFI-DEMALGGISPNRASWTFHVKMHNMVVQGLCNNV-DPTR 391

Query: 380 AHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKD 425
           A  ++      G+   + ++  + K F   G+   A+++L +M  D
Sbjct: 392 AFQLYLSMRTRGISVEIGTFDCLVKCFCKRGDLNKAARILEEMILD 437



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/155 (21%), Positives = 78/155 (50%), Gaps = 1/155 (0%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFN 63
            ++ P+  SY  +     +   V  A+   ++M +  + P+  ++N ++ A C+      
Sbjct: 114 FQVKPTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEETVE 173

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
              R++  + +   +P+S T+ ++I+   K+     A  LLD+++E  L P+   Y +++
Sbjct: 174 SAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLI 233

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
            G  +  ++  A+ +L+EM    ++P+  T+S L+
Sbjct: 234 HGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLM 268


>gi|357145938|ref|XP_003573820.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
           chloroplastic-like [Brachypodium distachyon]
          Length = 1084

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/349 (19%), Positives = 136/349 (38%), Gaps = 34/349 (9%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P   T N +L  C  S +F+   ++  ++    LKP+ + + ++IS   K    D+ + +
Sbjct: 455 PKMSTFNMLLSVCAHSQDFDGALQVMMLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEV 514

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163
             ++    + P  + Y A++ G  +   V  A      M    VKPD   F+ LI  C  
Sbjct: 515 FHEMVSAGIEPNVNTYGALIDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACGE 574

Query: 164 EEDIIKYYEQLKSAGGQITK-----------YVFMALINAYTTCGEFEKARQVV-LDAEI 211
              + + ++ L     + ++               AL+      G+ ++AR+V  +  E 
Sbjct: 575 SGAVARAFDVLSEMTAEPSESKGWKPILPDHVTVGALMKTCIQAGQADRAREVYKMLQEY 634

Query: 212 PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRL 271
            +K   EV +  + + +  G    A+ +YE++ + G   +   + AL++        +  
Sbjct: 635 NIKGTPEVYTIALRSCSLTGDLGFALKIYEDMNKIGVIPDEMFLSALVDVAGHARRADAA 694

Query: 272 IQLLEEVHDPDY---------WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAM 322
            +++++V    +         +M  CC         K    A  L +++K       + M
Sbjct: 695 FEIIKDVRAKGFHVGIMAYSSFMGACCNA-------KDWKKALQLFEEIKISRLTPTVPM 747

Query: 323 EYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGAC 371
                   C     D   VQ  +++L  +K E G+ P+      L  AC
Sbjct: 748 MNALITSLC-----DGDQVQKSIEVLNELK-EFGVRPNEITYSVLCVAC 790



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 110/262 (41%), Gaps = 17/262 (6%)

Query: 31  LDVVEQMVQGELVPSTETIN-SILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           +D++E M Q  L+   +  + S L AC++        R   +I +    P   TF  ++S
Sbjct: 410 VDLLENMEQKGLLDMKKIHHASFLIACKKQRAVMEAVRFCRLIAN----PKMSTFNMLLS 465

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +    +DFD A  ++  LKE  L P   +Y  +++   +   V     V  EM  A ++P
Sbjct: 466 VCAHSQDFDGALQVMMLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMVSAGIEP 525

Query: 150 DSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           +  T+  LI  C+    + K    Y  + S   +  + VF ALI+A    G   +A  V+
Sbjct: 526 NVNTYGALIDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVL 585

Query: 207 --LDAEI-------PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIA 257
             + AE        P+        AL+      G+   A  VY+ ++E      P     
Sbjct: 586 SEMTAEPSESKGWKPILPDHVTVGALMKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTI 645

Query: 258 LIEHLNSEGELNRLIQLLEEVH 279
            +   +  G+L   +++ E+++
Sbjct: 646 ALRSCSLTGDLGFALKIYEDMN 667


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 85/433 (19%), Positives = 175/433 (40%), Gaps = 26/433 (6%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETI--NSILHACEESYE 61
           +L   P   SY  L+   C+  K   A D++  M +G  V S + +  N+++    +  +
Sbjct: 177 ELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGD 236

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
            N    ++  +    + P+  T+ S++    K +  D A + L  +    ++P    YN 
Sbjct: 237 VNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNN 296

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAG 178
           ++ GY      + A+ V KEM + ++ PD    + L+ +      I +    ++ +   G
Sbjct: 297 LIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKG 356

Query: 179 GQITKYVFMALINAYTTCGEFEKARQV----VLDAEIPVKSRSEVKSALVSALASHGRTS 234
                + +  ++N Y T G       +    + D   PV     V   L+ A A+ G   
Sbjct: 357 QNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNV---LIKAYANCGMLD 413

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN----RLIQLLEEVHDPDYWMDGCCR 290
            A+I++ E+++ G        + +I  L   G+++    +  Q++++   PD +   C  
Sbjct: 414 KAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHC-- 471

Query: 291 LILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQF 350
           LI        L  A +L+ ++ +     ++          C++      D Q   DL   
Sbjct: 472 LIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRV--MDAQNIFDLTV- 528

Query: 351 IKDELGLPPSRKCLDFLL-GACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLAS 409
               +GL P     + L+ G C+  + +++A  ++    +AG+  NV+ Y  +   +   
Sbjct: 529 ---NVGLHPDAVVYNMLMDGYCLVGK-MEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKI 584

Query: 410 GNRKSASKLLSKM 422
           G       L  +M
Sbjct: 585 GRIDEGLSLFREM 597



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/284 (19%), Positives = 120/284 (42%), Gaps = 18/284 (6%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           +  +I   C L +V  A ++ +  V   L P     N ++       +     R++  + 
Sbjct: 504 FGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMV 563

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
              ++PN   + ++++   KI   D   SL  ++ +  + P+  +YN I+ G F      
Sbjct: 564 SAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTV 623

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHN-----CSNEEDIIKYYEQLKSAGGQITKYVFMA 188
            A +   EM ++ +  +  T+S ++       C +E   I  +++L++   +I       
Sbjct: 624 PAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEA--IFLFKELRAMNVKIDIITLNT 681

Query: 189 LINAYTTCGEFEKARQVVLDAEIPVKSRSEVK------SALVSALASHGRTSDAIIVYEE 242
           +I         E+A+   L A I   SRS +       S +++ L   G   +A  ++  
Sbjct: 682 MIAGMFQTRRVEEAKD--LFASI---SRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSS 736

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
           ++ AGC  + R +  ++  L  + E+ R    L ++ + ++ ++
Sbjct: 737 MQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLE 780



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 79/175 (45%), Gaps = 3/175 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P+   Y  L+   C + ++   L +  +M+Q  + PST   N I+    E+      +
Sbjct: 567 IEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAK 626

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
             +  +    +  N  T+  ++    K + FD A  L  +L+ MN+       N ++AG 
Sbjct: 627 VKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGM 686

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAG 178
           F+ + V+ A  +   + ++ + P + T+S +I N   E   E+    +  +++AG
Sbjct: 687 FQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQNAG 741


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/310 (21%), Positives = 132/310 (42%), Gaps = 33/310 (10%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           KL I P   ++  LI   C+  K+ VA+++  +MV+    P   + N++++    S   N
Sbjct: 156 KLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTN 215

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
           +   ++  +  +  KPN  T+ ++I    K +  + A   L ++    + P A  YN+I+
Sbjct: 216 MAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIV 275

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK 183
            G      +  A  + K MEQ   KPD  T++ +I +         Y ++L +       
Sbjct: 276 HGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSL--------YKDRLVNDAADFLS 327

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
                                 ++D  IP    +   + ++  L   G+ ++AI +++++
Sbjct: 328 E---------------------MVDQGIPPDVVTY--TTILHGLCYLGQLNEAIRLFKKM 364

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC-RLILHCV-RFKQL 301
           ++ GC  +  A   +I+ L  +  +N  ++ L E+ D     +      ILH      QL
Sbjct: 365 EQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQL 424

Query: 302 SSATDLLKQL 311
             AT L K++
Sbjct: 425 DEATQLFKEM 434



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 3/182 (1%)

Query: 27  VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS 86
           V+ A D + +MV   + P   T  +ILH      + N   R++  +     KP+   + +
Sbjct: 319 VNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNT 378

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           +I    K +  + A   L ++ +  + P A  Y+ I+ G+     +  A  + KEM   N
Sbjct: 379 IIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRN 438

Query: 147 VKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203
           V P++ TFS L+     E  + +    +E +   G +   Y + AL+N Y    +  +AR
Sbjct: 439 VMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEAR 498

Query: 204 QV 205
           +V
Sbjct: 499 KV 500



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 112/273 (41%), Gaps = 22/273 (8%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  +I   C    V+ A++ + +MV   + P+  T ++ILH      + +   ++
Sbjct: 371 PDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQL 430

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +   N+ PN+ TF  ++    +      A  + + + E  + P    YNA+M GY  
Sbjct: 431 FKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCL 490

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMA 188
           +  +  A  V + M      PD  +++ LI+   N         ++  A   +T+     
Sbjct: 491 RCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSR-------RMDKAKALLTQMSVKK 543

Query: 189 LINAYTTCGEFEKARQVV---LDAEIPVKSRSE--------VKSALVSALASHGRTSDAI 237
           L     T     K    V   LDA+   K              S L++ L  HG   +A+
Sbjct: 544 LTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEAL 603

Query: 238 IVYEEIKEAGCNLEPRAVI--ALIEHLNSEGEL 268
            +++ +KE    LEP  ++   LIE +   G+L
Sbjct: 604 KLFKSMKEK--KLEPDIILYTILIEGMFIGGKL 634



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/279 (18%), Positives = 119/279 (42%), Gaps = 6/279 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P   +Y  ++   C L +++ A+ + ++M Q    P     N+I+ +  +    N   
Sbjct: 334 IPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAM 393

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
                +    + PN+ T+ +++     +   D A  L  ++   N+MP    ++ ++ G 
Sbjct: 394 EFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGL 453

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN----CSNEEDIIKYYEQLKSAGGQIT 182
            ++  V  A  V + M +  V+P+  T++ L++     C   E   K +E +   G    
Sbjct: 454 CQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNE-ARKVFEIMVGKGCAPD 512

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYE 241
            + +  LIN Y      +KA+ ++    +   + + V  + ++  L   GR  DA  +++
Sbjct: 513 LHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFK 572

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           ++  +G          L+  L   G L+  ++L + + +
Sbjct: 573 KMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKE 611



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/244 (18%), Positives = 104/244 (42%), Gaps = 6/244 (2%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
            + P++ ++  L+   C    V  A  V E M +  + P+  T N++++      + N  
Sbjct: 438 NVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEA 497

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           R+++ ++      P+  ++  +I+     +  D A +LL  +    L P    YN IM G
Sbjct: 498 RKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKG 557

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQIT 182
                 +  A  + K+M  + + P   T+S L++        ++ +K ++ +K    +  
Sbjct: 558 LCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPD 617

Query: 183 KYVFMALINAYTTCGEFEKARQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
             ++  LI      G+ E A+ +   L A+  ++      + ++  L   G + +A  ++
Sbjct: 618 IILYTILIEGMFIGGKLEVAKGLFSKLSAD-GIQPPGRTYNVMIKGLLKEGLSDEAYELF 676

Query: 241 EEIK 244
            + K
Sbjct: 677 RKWK 680



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 69/361 (19%), Positives = 139/361 (38%), Gaps = 28/361 (7%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
           N +P+   F   +    K+K + +   L + +    +  T    N ++    R   V  A
Sbjct: 88  NPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNILINCLCRLNHVDFA 147

Query: 136 LMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINA 192
           + V  +M +  ++PD  TF+ LI+   NE  I   ++ Y ++  +G +     +  LIN 
Sbjct: 148 VSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLING 207

Query: 193 YTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLE 251
               G    A  V    E    K      + ++ +L      +DA+    E+   G  + 
Sbjct: 208 LCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEM--VGRGIP 265

Query: 252 PRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC-------CRLILHCVRFKQLS 302
           P A+   +++  L   G+LN   +L + +       +GC         +I    + + ++
Sbjct: 266 PDAITYNSIVHGLCCLGQLNEATRLFKRMEQ-----NGCKPDVVTYNIIIDSLYKDRLVN 320

Query: 303 SATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIK-DELGLPPSR 361
            A D L ++ D+    ++          C +        Q+   +  F K ++ G  P  
Sbjct: 321 DAADFLSEMVDQGIPPDVVTYTTILHGLCYLG-------QLNEAIRLFKKMEQKGCKPDV 373

Query: 362 KCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSK 421
              + ++ +    R +  A     E  + G+P N ++Y  +   F   G    A++L  +
Sbjct: 374 VAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKE 433

Query: 422 M 422
           M
Sbjct: 434 M 434


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 106/238 (44%), Gaps = 20/238 (8%)

Query: 37  MVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKD 96
           + QG    S  +I S L AC       +  +++ ++    +  +     S++S+  K   
Sbjct: 216 LAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGL 275

Query: 97  FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSY 156
            D A +L D   EM +  T S Y+A+++GY +    + A +V K+M+  NV+PD+ T   
Sbjct: 276 IDQAIALFD---EMAVKDTVS-YSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVS 331

Query: 157 LIHNCSNEEDIIKYYEQLKSAGGQIT-------KYVFMALINAYTTCGEFEKARQVVLDA 209
           LI  CS+    +   +  + + G +          +  ALI+ Y  CG  + +RQV    
Sbjct: 332 LIPACSH----LAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVF--N 385

Query: 210 EIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
            +P  SR  V  + +++    HG   +A  ++ E+   G   +    I L+   +  G
Sbjct: 386 MMP--SRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSG 441



 Score = 43.1 bits (100), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 44/222 (19%), Positives = 93/222 (41%), Gaps = 14/222 (6%)

Query: 11  SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYP 70
           + SY  L++      +   A  V ++M    + P   T+ S++ AC         R  + 
Sbjct: 291 TVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHG 350

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM--YNAIMAGYFR 128
            +    L   +    ++I +  K    D +  +       N+MP+  +  +N ++AGY  
Sbjct: 351 SVIIRGLASETSICNALIDMYAKCGRIDLSRQVF------NMMPSRDIVSWNTMIAGYGI 404

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII--KYYEQLKSAGGQITKYV- 185
               + A  +  EM      PD  TF  L+  CS+   +I  K++  +   G  +T  + 
Sbjct: 405 HGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRME 464

Query: 186 -FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSA 226
            ++ +++  +  G  ++A + +    +P+++   V  AL+ A
Sbjct: 465 HYICMVDLLSRGGFLDEAYEFI--QSMPLRADVRVWVALLGA 504


>gi|410109885|gb|AFV61022.1| pentatricopeptide repeat-containing protein 11, partial
           [Coelocarpum swinglei]
          Length = 429

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/278 (20%), Positives = 127/278 (45%), Gaps = 9/278 (3%)

Query: 9   PSSASYKKLITYS-CDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           P+S  +  ++ +  C    + VAL V + + +  L PS  + N++++      + +   R
Sbjct: 137 PASLYFFNILMHRFCKEGDIRVALSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFR 196

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +   +    ++P+  T+  +I+   K    D A  L D++ +  L+P    +  ++ G+ 
Sbjct: 197 LKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHC 256

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQITKY 184
           +   V  A+ V K+M   ++ PD  T++ LI+    + D+ +     ++++  G +  K 
Sbjct: 257 KNGRVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDKI 316

Query: 185 VFMALINAYTTCGEFEKA---RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
            +  LI+     G+ E A   R+ ++   I +   +   +AL+S L   GR+ DA  +  
Sbjct: 317 SYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVA--YTALISGLCQEGRSIDAEKMLR 374

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279
           E+   G   +      +I     +G++    +LL+E+ 
Sbjct: 375 EMLSVGLRPDTGTYTMIINEFCKKGDVWTGSKLLKEMQ 412



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 96/219 (43%), Gaps = 8/219 (3%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           MHA   + P   +Y  LI   C   K+  A ++ ++M+   LVP+  T  +++    ++ 
Sbjct: 201 MHAS-GVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNG 259

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
             +L   +Y  +   +L P+  T+ ++I    K  D   A  L+D+++   L P    Y 
Sbjct: 260 RVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDKISYT 319

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE---DIIKYYEQLKSA 177
            ++ G  ++ D++ A    K M Q N++ D   ++ LI     E    D  K   ++ S 
Sbjct: 320 TLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSIDAEKMLREMLSV 379

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVV----LDAEIP 212
           G +     +  +IN +   G+     +++     D  +P
Sbjct: 380 GLRPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVP 418



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 87/213 (40%), Gaps = 8/213 (3%)

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
           F LV   Y  I       +   F  ++    K  D   A S+ D + +  L P+   +N 
Sbjct: 121 FKLVWXFYKEILECGYPASLYFFNILMHRFCKEGDIRVALSVFDAITKWGLRPSVVSFNT 180

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAG 178
           +M GY R  D+     +   M  + V+PD  T+S LI+    E   +D  + ++++   G
Sbjct: 181 LMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKG 240

Query: 179 GQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSE---VKSALVSALASHGRTSD 235
                  F  LI+ +   G  + A +V    ++  +S S      + L+  L   G    
Sbjct: 241 LVPNGVTFTTLIDGHCKNGRVDLAMEVY--KQMLSQSLSPDLITYNTLIYGLCKKGDLKQ 298

Query: 236 AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGEL 268
           A  + +E++  G   +  +   LI+    EG+L
Sbjct: 299 AQDLIDEMRMKGLKPDKISYTTLIDGCCKEGDL 331


>gi|242094598|ref|XP_002437789.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
 gi|241916012|gb|EER89156.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
          Length = 623

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 109/240 (45%), Gaps = 25/240 (10%)

Query: 87  MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146
           M++  ++ KD   A  L D++ E N++   +M N    GY + K  + AL +   M  A 
Sbjct: 266 MVTGFIQNKDLKRARELFDEMPERNVVTWTTMMN----GYLKGKQSELALGLFSGMLMAG 321

Query: 147 VKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203
            +P+  TF   +  CS+   +    + ++ +     Q   +V  AL+N Y  CGE   AR
Sbjct: 322 TRPNQVTFLGALDACSDLAALCEGKQVHQMICKTTFQFDAFVESALMNVYAKCGEIGLAR 381

Query: 204 QVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262
           ++  L  E  + S     + +++A A HG   +AI++YE+++E G        + L+   
Sbjct: 382 KLFDLSREKDLIS----WNGIIAAYAHHGVGIEAILLYEKMQENGYRPNDVTYVVLLSAC 437

Query: 263 NSEGELNRLIQLLEE--------VHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDK 314
           +  G ++  +++ E         V D  Y     C LI  C R  +L  A  L+  LK K
Sbjct: 438 SHSGLVDEGLKIFESMVNDRSIAVRDEHY----TC-LIDLCSRAGRLDDAKRLIHYLKIK 492



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 96/210 (45%), Gaps = 9/210 (4%)

Query: 29  VALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88
           +AL +   M+     P+  T    L AC +       ++++ MIC    + ++    +++
Sbjct: 309 LALGLFSGMLMAGTRPNQVTFLGALDACSDLAALCEGKQVHQMICKTTFQFDAFVESALM 368

Query: 89  SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148
           ++  K  +   A  L D  +E +L+     +N I+A Y        A+++ ++M++   +
Sbjct: 369 NVYAKCGEIGLARKLFDLSREKDLIS----WNGIIAAYAHHGVGIEAILLYEKMQENGYR 424

Query: 149 PDSQTFSYLIHNCSNE---EDIIKYYEQL-KSAGGQITKYVFMALINAYTTCGEFEKARQ 204
           P+  T+  L+  CS+    ++ +K +E +       +    +  LI+  +  G  + A++
Sbjct: 425 PNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKR 484

Query: 205 VVLDAEIPVKSRSEVKSALVSALASHGRTS 234
           ++   +I   S S V SAL+    +HG  S
Sbjct: 485 LIHYLKIKPASGS-VWSALLGGCNAHGNES 513


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 83/420 (19%), Positives = 173/420 (41%), Gaps = 47/420 (11%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  +I   C + +  +A  + ++M +     +  T ++++H+  +    N    I
Sbjct: 78  PDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDI 137

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +   ++ P   T+ S+I        +  A +LL+++  +N+MP    +N ++  + +
Sbjct: 138 FSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCK 197

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYV 185
           +  V  A  VLK M +  V+PD  T++ L++  S   +++   K ++ + + G +   + 
Sbjct: 198 EGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFS 257

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIK 244
           +  LIN Y      ++A+Q+  +      + + V  + L+  L   GR  +A  +++ + 
Sbjct: 258 YSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMH 317

Query: 245 EAGC--NLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLS 302
             G   NL   A+  L++    +G L +  +L   +            L  + V +  L 
Sbjct: 318 TNGNLPNLYTYAI--LLDGFCKQGYLGKAFRLFRAMQST--------YLKPNLVMYNILV 367

Query: 303 SATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRK 362
           +A      LKD       A E  FSE+F                        +GL P+ +
Sbjct: 368 NAMCKSGNLKD-------AREL-FSELFV-----------------------IGLQPNVQ 396

Query: 363 CLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
               ++        L  A   ++  E+ G P +  SY  + + FL   +   A  L+ +M
Sbjct: 397 IYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEM 456



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/286 (18%), Positives = 123/286 (43%), Gaps = 4/286 (1%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           L I P+  ++  L+   C   KV  A  V++ M +  + P   T NS+++      E   
Sbjct: 179 LNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVE 238

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
            R+++ ++     KP+  ++  +I+   K K  D A  L +++      P    YN ++ 
Sbjct: 239 ARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIH 298

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK- 183
           G  +   ++ A  + K M      P+  T++ L+     +  + K +   ++      K 
Sbjct: 299 GLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKP 358

Query: 184 --YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
              ++  L+NA    G  + AR++  +   I ++   ++ + +++ L   G   +A+  +
Sbjct: 359 NLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAF 418

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD 286
             +++ GC  +  +   +I       + +R + L+ E+ D  +  D
Sbjct: 419 RNMEDDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRGFITD 464



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 90/437 (20%), Positives = 167/437 (38%), Gaps = 42/437 (9%)

Query: 42  LVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAY 101
           L P+T T+N +++   +    +L   +        L+P   TF ++I+   K+  F  A 
Sbjct: 6   LSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAV 65

Query: 102 SLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN- 160
            L DD+      P    Y  I+ G  +  +   A  + K+ME+A  + +  T+S LIH+ 
Sbjct: 66  ELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSL 125

Query: 161 CS----NEE-DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVK 214
           C     NE  DI  Y   +K+     T + + +LI        +++A  ++ +   + + 
Sbjct: 126 CKYRRVNEALDIFSY---MKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIM 182

Query: 215 SRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLI 272
                 + LV      G+   A  V + + E G  +EP  V   +L+   +   E+    
Sbjct: 183 PNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMG--VEPDVVTYNSLMYGYSMWTEVVEAR 240

Query: 273 QLLE---------EVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAME 323
           +L +         +V      ++G C+        K++  A  L  ++  +         
Sbjct: 241 KLFDVMITKGCKPDVFSYSILINGYCKA-------KRIDEAKQLFNEMIHQGSTPNNVSY 293

Query: 324 YHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLI 383
                  CQ+            DL + +     LP        L G C     L +A  +
Sbjct: 294 NTLIHGLCQLGRLREAQ-----DLFKNMHTNGNLPNLYTYAILLDGFCKQGY-LGKAFRL 347

Query: 384 WKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM------PKDDPHVRFVIQACK 437
           ++  ++  L  N++ Y  +  A   SGN K A +L S++      P    +   +   CK
Sbjct: 348 FRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCK 407

Query: 438 QTYTIPSLQKERGFEKD 454
           +     +L+  R  E D
Sbjct: 408 EGLLDEALEAFRNMEDD 424


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/401 (19%), Positives = 166/401 (41%), Gaps = 16/401 (3%)

Query: 31  LDVVEQMVQG-ELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           L VV  M+    L P T   N +L+   +     LV   +  +    +KP+  TF  +I 
Sbjct: 138 LGVVHWMIDDFGLKPDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVWGIKPDVSTFNVLIK 197

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              +      A  +L+D+    L+P    +  IM GY  + D+ GAL + ++M +     
Sbjct: 198 ALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGCSW 257

Query: 150 DSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQIT-KYVFMALINAYTTCGEFEKARQV 205
            + + + ++H    E   ED + + +++ +  G    +Y F  L+N     G  + A + 
Sbjct: 258 SNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIE- 316

Query: 206 VLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263
           ++D  +      +V +  +++S L   G   +A+   +++    C+        LI  L 
Sbjct: 317 IMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLC 376

Query: 264 SEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQLSSATDLLKQLKDKFKDDEMA 321
            E ++    +L   +       D C    LI      +    A +L ++++ K  + +  
Sbjct: 377 KENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPD-- 434

Query: 322 MEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAH 381
            E+ ++ +   + +    D    L++L+ ++   G   S    + L+     A  ++ A 
Sbjct: 435 -EFTYNMLIDSLCSKGKLDE--ALNMLKQMELS-GCARSVITYNTLIDGFCKANKIREAE 490

Query: 382 LIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
            I+ E E  G+  N ++Y  +      S   + AS+L+ +M
Sbjct: 491 EIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQM 531



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/314 (19%), Positives = 138/314 (43%), Gaps = 10/314 (3%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   ++  L+   C    V  A+++++ M+Q    P   T NS++    +  E       
Sbjct: 293 PDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEF 352

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +   +  PN+ T+ ++IS   K    + A  L   L    ++P    +N+++ G   
Sbjct: 353 LDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCL 412

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYV 185
            ++ + A+ + +EM     +PD  T++ LI + CS    ++ +   +Q++ +G   +   
Sbjct: 413 TRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVIT 472

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIK 244
           +  LI+ +    +  +A ++  + E+   SR+ V  + L+  L    R  DA  + +++ 
Sbjct: 473 YNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMI 532

Query: 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDYWMDGCCRLILHCVRFKQ 300
             G   +     +L+ H    G++ +   +++ +     +PD    G   LI    +  +
Sbjct: 533 MEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGT--LISGLCKAGR 590

Query: 301 LSSATDLLKQLKDK 314
           +  A+ LL+ ++ K
Sbjct: 591 VEVASKLLRSIQMK 604



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 80/391 (20%), Positives = 164/391 (41%), Gaps = 18/391 (4%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           +P++ +Y  LI+  C   +V  A ++   +    ++P   T NS++     +    +   
Sbjct: 362 SPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAME 421

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           ++  +     +P+  T+  +I         D A ++L  ++      +   YN ++ G+ 
Sbjct: 422 LFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFC 481

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKY 184
           +   ++ A  +  EME   V  +S T++ LI   C +   ED  +  +Q+   G +  K+
Sbjct: 482 KANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKF 541

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEE 242
            + +L+  +   G+ +KA  +V  A        ++ +   L+S L   GR   A  +   
Sbjct: 542 TYNSLLTHFCRGGDIKKAADIV-QAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRS 600

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILH--CVRF 298
           I+  G  L P A   +I+ L  + +    I L  E+ + +         R++    C   
Sbjct: 601 IQMKGIALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAAPDAVSYRIVFRGLCNGG 660

Query: 299 KQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDP--PDVQIGLDLLQFIKDEL- 355
             +  A D L +L +K    E +  Y  +E    ++  +     V + +   +F ++E+ 
Sbjct: 661 GPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVNMVMQKARFSEEEVS 720

Query: 356 ---GLPPSRKCLDFL--LGACVNARDLKRAH 381
              GL   RK  D L  LG  +++R  +R +
Sbjct: 721 MVKGLLKIRKFQDALATLGGVLDSRQPRRTY 751


>gi|222622248|gb|EEE56380.1| hypothetical protein OsJ_05522 [Oryza sativa Japonica Group]
          Length = 518

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 91/177 (51%), Gaps = 14/177 (7%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
             +PN  T+ ++++  +K +D  SA ++ D +      P+ + +N +++GY +++  Q  
Sbjct: 53  GFEPNEVTYSNLLASCIKARDVHSARAMFDKISR----PSVTTWNTLLSGYCQEEQHQDT 108

Query: 136 LMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQI----TKYVFMALIN 191
           + + + M+  NV+PD  T + ++ +CS +  I+ +  Q+ SA  +       +V   L++
Sbjct: 109 IELFRRMQHQNVQPDRTTLAVILSSCS-KLGILDFGRQVHSASVRFLLHNDMFVASGLVD 167

Query: 192 AYTTCGEFEKARQVVLDAEIPVKSRSEV-KSALVSALASHGRTSDAIIVYEEIKEAG 247
            Y+ CG+   AR +       +  R  V  ++++S L  H    +A   +++++E G
Sbjct: 168 MYSKCGQIGIARSIF----NKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENG 220



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/198 (19%), Positives = 85/198 (42%), Gaps = 7/198 (3%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           PS  ++  L++  C   +    +++  +M    + P   T+  IL +C +    +  R++
Sbjct: 87  PSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQV 146

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +       L  +      ++ +  K      A S+ + + E +++     +N+I++G   
Sbjct: 147 HSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVV----CWNSIISGLTI 202

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYV 185
               + A    K+M +  + P   +++ +I++CS    I    + + Q+   G     YV
Sbjct: 203 HSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYV 262

Query: 186 FMALINAYTTCGEFEKAR 203
             ALI+ Y  CG  + AR
Sbjct: 263 GSALIDMYAKCGNMDDAR 280



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 40/205 (19%), Positives = 89/205 (43%), Gaps = 10/205 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A D  +QM +  ++P+  +  S++++C         R+I+  +       N     ++I 
Sbjct: 209 AFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALID 268

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K  + D A    D +   N++     +N ++ GY +      A+ + + M     KP
Sbjct: 269 MYAKCGNMDDARLFFDTMMMKNIVA----WNEMIHGYAQNGLGDKAVELFEYMLTTEQKP 324

Query: 150 DSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQIT-KYVFMALINAYTTCGEFEKARQV 205
           D+ TF  ++  CS+    +  + ++  ++++ G I     +  LI+A    G F +   +
Sbjct: 325 DAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEAL 384

Query: 206 VLDAEIPVKSRSEVKSALVSALASH 230
           +   ++P K    +   L++A   H
Sbjct: 385 I--HKMPCKDDPIIWEVLLAACVVH 407


>gi|242075674|ref|XP_002447773.1| hypothetical protein SORBIDRAFT_06g015370 [Sorghum bicolor]
 gi|241938956|gb|EES12101.1| hypothetical protein SORBIDRAFT_06g015370 [Sorghum bicolor]
          Length = 380

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 119/282 (42%), Gaps = 11/282 (3%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
            L  +P++  +  LI+          ALD    +  G L P+T    ++L + + +   +
Sbjct: 73  SLPFSPTAPLFTTLISSLAASGSKSAALDAFSLLASG-LGPTTSAFTALLKSIDAAPSES 131

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
           + R  +  +      P++ T+  +I +    +  D A+ +LD + E  + PT   Y AI+
Sbjct: 132 VYRAFFGTMAAMGCAPDAATYNCLIWMLCDSQRLDEAWGVLDSMLEEGICPTVRSYTAIL 191

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-C-----SNEEDIIKYYEQLKSA 177
            GY ++  V  A  ++  M Q    PD  ++S LI   C        E I+   E     
Sbjct: 192 HGYCKQGRVLEAERLVDTMIQVGCAPDVISYSVLIQGLCRVGEFGKVERILGESEAKGWT 251

Query: 178 GGQITKYVFMALINAYTTCGEFEKA-RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDA 236
              +T  ++M   +A    G  ++A RQV +     V    E  + L   L      S+A
Sbjct: 252 PNAVTYNIYM---SALCRMGFLDEAFRQVDVMLSRGVSMTIETVNILFDCLCRDSMFSEA 308

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           + + E  +E   N++      L+  L   G+  R+++LL ++
Sbjct: 309 VSLLEYSEELNWNVDVFCYNTLMSRLCDAGDFARVLKLLVDL 350



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/216 (20%), Positives = 93/216 (43%), Gaps = 17/216 (7%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYE 61
           A +   P +A+Y  LI   CD  ++  A  V++ M++  + P+  +  +ILH  C++   
Sbjct: 141 AAMGCAPDAATYNCLIWMLCDSQRLDEAWGVLDSMLEEGICPTVRSYTAILHGYCKQGRV 200

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
               R +  MI      P+  ++  +I    ++ +F     +L + +     P A  YN 
Sbjct: 201 LEAERLVDTMI-QVGCAPDVISYSVLIQGLCRVGEFGKVERILGESEAKGWTPNAVTYNI 259

Query: 122 IMA-----GY----FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE 172
            M+     G+    FR+ DV  +  V   +E  N+  D      +    S    +++Y E
Sbjct: 260 YMSALCRMGFLDEAFRQVDVMLSRGVSMTIETVNILFDCLCRDSMF---SEAVSLLEYSE 316

Query: 173 QLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
           +L      +  + +  L++     G+F +  ++++D
Sbjct: 317 ELN---WNVDVFCYNTLMSRLCDAGDFARVLKLLVD 349


>gi|255566084|ref|XP_002524030.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536757|gb|EEF38398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1016

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 128/279 (45%), Gaps = 26/279 (9%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVV----EQMVQG---ELVPSTETINSILHAC 56
           K+ + P+  +Y  LI     L K   A +      + +V+G   +LV  T  ++ +  + 
Sbjct: 301 KMGVDPNHVAYTTLID---SLFKAGSAWEAFACQSQLVVRGMTLDLVMCTTLVDGLFKSS 357

Query: 57  EESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTA 116
           +     ++ R +  +    NL PNS T+ ++I    K+ D +   SLL +++E ++ P  
Sbjct: 358 KPKEAEDMFRALSKL----NLIPNSITYTALIDGYCKVGDMERVESLLQEMEEKHINPNV 413

Query: 117 SMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQ 173
             Y++I+ GY +K  +  A+ V+K+M   N+ P++  ++ LI        +E     Y +
Sbjct: 414 ITYSSIINGYTKKGILDEAINVMKKMLDQNIIPNAYVYAILIDGYCKAGKQEIATDLYNE 473

Query: 174 LKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEV-----KSALVSALA 228
           +K +G ++   +F  L+N        ++A +++ D    V SR  +      ++L+    
Sbjct: 474 MKLSGLKVNNVLFDVLVNNLKRGKRMDEAEELLKD----VTSRGLLLDHVNYTSLMDGFF 529

Query: 229 SHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
             G+ S A+ + EE+ E     +      LI  L   G+
Sbjct: 530 KAGKESAALNMVEEMTEKSIPFDVVTYNVLINGLLEHGK 568



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 85/184 (46%), Gaps = 4/184 (2%)

Query: 26  KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85
           K   AL++VE+M +  +     T N +++   E  ++   + +Y  +    L PN  T+ 
Sbjct: 533 KESAALNMVEEMTEKSIPFDVVTYNVLINGLLEHGKYE-AKSVYSGMIEMGLAPNQATYN 591

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
            MI    K  + D+A  L +++K   +MP++   N ++ G     +++ A+ VL EM   
Sbjct: 592 IMIKAYCKQGELDNALELWNEMKSHKIMPSSITCNTLVVGLSEAGEIEKAMNVLNEMSVM 651

Query: 146 NVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202
            + P+      L++  S       +++ +EQL   G +I +  +  LI  +      +KA
Sbjct: 652 GIHPNLVIHRVLLNASSKSGKANAVLQMHEQLVDMGLKINQEAYNNLIVVFCRLRMTKKA 711

Query: 203 RQVV 206
             V+
Sbjct: 712 TSVL 715



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 76/401 (18%), Positives = 161/401 (40%), Gaps = 52/401 (12%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P+  +Y  +I        +  A++V+++M+   ++P+      ++    ++ +  +  
Sbjct: 409 INPNVITYSSIINGYTKKGILDEAINVMKKMLDQNIIPNAYVYAILIDGYCKAGKQEIAT 468

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +Y  +    LK N+  F  +++   + K  D A  LL D+    L+     Y ++M G+
Sbjct: 469 DLYNEMKLSGLKVNNVLFDVLVNNLKRGKRMDEAEELLKDVTSRGLLLDHVNYTSLMDGF 528

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC--SNEEDIIKYYEQLKSAGGQITKY 184
           F+      AL +++EM + ++  D  T++ LI+      + +    Y  +   G    + 
Sbjct: 529 FKAGKESAALNMVEEMTEKSIPFDVVTYNVLINGLLEHGKYEAKSVYSGMIEMGLAPNQA 588

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
            +  +I AY   GE + A ++  + +   +   S   + LV  L+  G    A+ V  E+
Sbjct: 589 TYNIMIKAYCKQGELDNALELWNEMKSHKIMPSSITCNTLVVGLSEAGEIEKAMNVLNEM 648

Query: 244 KEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMD--GCCRLILHCVRFK 299
              G  + P  VI   L+   +  G+ N ++Q+ E++ D    ++      LI+   R +
Sbjct: 649 SVMG--IHPNLVIHRVLLNASSKSGKANAVLQMHEQLVDMGLKINQEAYNNLIVVFCRLR 706

Query: 300 QLSSATDLLK-QLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLP 358
               AT +LK  ++D F  D +                                      
Sbjct: 707 MTKKATSVLKYMIRDGFVADTVTYNA---------------------------------- 732

Query: 359 PSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSY 399
                   + G C ++  +K+A   + +  N G+  N+++Y
Sbjct: 733 -------LIRGYCESSH-VKKALATYTQMLNEGVSPNIVTY 765



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/248 (20%), Positives = 108/248 (43%), Gaps = 8/248 (3%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +I PSS +   L+    +  ++  A++V+ +M    + P+      +L+A  +S + N V
Sbjct: 617 KIMPSSITCNTLVVGLSEAGEIEKAMNVLNEMSVMGIHPNLVIHRVLLNASSKSGKANAV 676

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            +++  +    LK N E + ++I +  +++    A S+L  +     +     YNA++ G
Sbjct: 677 LQMHEQLVDMGLKINQEAYNNLIVVFCRLRMTKKATSVLKYMIRDGFVADTVTYNALIRG 736

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQIT 182
           Y     V+ AL    +M    V P+  T++ L+        +    + ++++K  G    
Sbjct: 737 YCESSHVKKALATYTQMLNEGVSPNIVTYNLLLGGLLGAGLMAERDELFDKMKENGLNPD 796

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKS---RSEVKSALVSALASHGRTSDAIIV 239
              +  LI+ Y   G   K   + L  E+  +    ++   + L+S  A  G+   A  +
Sbjct: 797 ASTYDTLISGYGKIG--NKKESIRLYCEMVAQGFVPKTSTYNVLISDFAKVGKMDQAREL 854

Query: 240 YEEIKEAG 247
             E++  G
Sbjct: 855 LNEMQVRG 862



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 65/325 (20%), Positives = 136/325 (41%), Gaps = 17/325 (5%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           ++ + P+ A+Y  +I   C   ++  AL++  +M   +++PS+ T N+++    E+ E  
Sbjct: 580 EMGLAPNQATYNIMIKAYCKQGELDNALELWNEMKSHKIMPSSITCNTLVVGLSEAGEIE 639

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               +   +    + PN    R +++ + K    ++   + + L +M L      YN ++
Sbjct: 640 KAMNVLNEMSVMGIHPNLVIHRVLLNASSKSGKANAVLQMHEQLVDMGLKINQEAYNNLI 699

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAG-- 178
             + R +  + A  VLK M +     D+ T++ LI      S+ +  +  Y Q+ + G  
Sbjct: 700 VVFCRLRMTKKATSVLKYMIRDGFVADTVTYNALIRGYCESSHVKKALATYTQMLNEGVS 759

Query: 179 -GQITKYVFMALINAYTTCGE----FEKARQVVLDAEIPVKSRSEVKSALVSALASHGRT 233
              +T  + +  +       E    F+K ++  L+ +      +     L+S     G  
Sbjct: 760 PNIVTYNLLLGGLLGAGLMAERDELFDKMKENGLNPD------ASTYDTLISGYGKIGNK 813

Query: 234 SDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLIL 293
            ++I +Y E+   G   +      LI      G++++  +LL E+             IL
Sbjct: 814 KESIRLYCEMVAQGFVPKTSTYNVLISDFAKVGKMDQARELLNEMQVRGVPPSSSTYDIL 873

Query: 294 HCVRFKQLSSATDLLKQLKDKFKDD 318
            C  +  LS   DL + LK  ++ D
Sbjct: 874 IC-GWCNLSKHPDLDRTLKKIYRTD 897


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 106/238 (44%), Gaps = 20/238 (8%)

Query: 37  MVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKD 96
           + QG    S  +I S L AC       +  +++ ++    +  +     S++S+  K   
Sbjct: 331 LAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGL 390

Query: 97  FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSY 156
            D A +L D   EM +  T S Y+A+++GY +    + A +V K+M+  NV+PD+ T   
Sbjct: 391 IDQAIALFD---EMAVKDTVS-YSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVS 446

Query: 157 LIHNCSNEEDIIKYYEQLKSAGGQIT-------KYVFMALINAYTTCGEFEKARQVVLDA 209
           LI  CS+    +   +  + + G +          +  ALI+ Y  CG  + +RQV    
Sbjct: 447 LIPACSH----LAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVF--N 500

Query: 210 EIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
            +P  SR  V  + +++    HG   +A  ++ E+   G   +    I L+   +  G
Sbjct: 501 MMP--SRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSG 556



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 44/222 (19%), Positives = 93/222 (41%), Gaps = 14/222 (6%)

Query: 11  SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYP 70
           + SY  L++      +   A  V ++M    + P   T+ S++ AC         R  + 
Sbjct: 406 TVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHG 465

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM--YNAIMAGYFR 128
            +    L   +    ++I +  K    D +  +       N+MP+  +  +N ++AGY  
Sbjct: 466 SVIIRGLASETSICNALIDMYAKCGRIDLSRQVF------NMMPSRDIVSWNTMIAGYGI 519

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII--KYYEQLKSAGGQITKYV- 185
               + A  +  EM      PD  TF  L+  CS+   +I  K++  +   G  +T  + 
Sbjct: 520 HGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRME 579

Query: 186 -FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSA 226
            ++ +++  +  G  ++A + +    +P+++   V  AL+ A
Sbjct: 580 HYICMVDLLSRGGFLDEAYEFI--QSMPLRADVRVWVALLGA 619


>gi|359496160|ref|XP_003635166.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33760-like [Vitis vinifera]
          Length = 561

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 126/288 (43%), Gaps = 30/288 (10%)

Query: 20  YSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKP 79
           +SCD      A+    +MV   +  S  T  +++ AC +     + R I+  +       
Sbjct: 97  FSCD------AILFYRRMVADSIPQSNYTFTAVIKACADISALRIGRPIHSHVLVCGYDS 150

Query: 80  NSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVL 139
           +S    ++I+   K  D   A  + D + E  ++     +N++++GY +    + A+ + 
Sbjct: 151 DSFVQAALIAFYAKSGDVGEAKKVFDRMPERTIIA----WNSMISGYDQNGFSKEAVGLF 206

Query: 140 KEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTC 196
             M +  V+ DS TF  ++  CS    +      ++ + +    +   +  +LIN YT C
Sbjct: 207 YRMRELGVEFDSATFVSVLSACSQSGALDLGCWVHDYIVNNSFDVNVVLGTSLINMYTRC 266

Query: 197 GEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGC----NLE 251
           G   KAR+V  +    +  R+ V  +A++S    HG   +AI ++  ++  G      L 
Sbjct: 267 GNVSKAREVFDE----MNERNVVAWTAMISGYGMHGYGREAIELFRLMRIHGMRQDYGLV 322

Query: 252 PRAV--IALIEHLNSEGELNRLIQLLEEV----HDPDYW--MDGCCRL 291
           PR    + +++ L   G LN   Q ++++      P  W  M G C++
Sbjct: 323 PRVEHHVCMVDMLGRAGFLNEAFQYIKDLKQGEQAPALWTAMLGACKM 370


>gi|359474892|ref|XP_002276432.2| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
           chloroplastic-like [Vitis vinifera]
          Length = 1115

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 9/210 (4%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMV--QGELVPSTETINSILHACEESYEFN 63
           ++ P    +  LIT       V  A DV+ +M      + P   T+ +++ AC  + + +
Sbjct: 592 KVEPDRVVFNALITACGQSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACTNAGQVD 651

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             R +Y MI  +N+K   E +   +S + +I D++ AYS+  D+    ++P     +A++
Sbjct: 652 RAREVYKMIDQYNIKGTPEVYTIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEMFLSALI 711

Query: 124 --AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKYYEQLKSAG 178
             AG+  K D   A  V++E     +     ++S L+  CSN ++    ++ Y  +KS  
Sbjct: 712 DVAGHAGKLDA--AFEVIQEARIQGIPLGIVSYSSLMGACSNAKNWQKALELYVDIKSMK 769

Query: 179 GQITKYVFMALINAYTTCGEFEKARQVVLD 208
              T     ALI A     + EKA +V+ D
Sbjct: 770 LNPTVSTMNALITALCEGEQLEKAMEVLSD 799



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 103/244 (42%), Gaps = 8/244 (3%)

Query: 43  VPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYS 102
            P+  T N ++  C  S +     ++  ++    LK + + + ++IS   K    D+ + 
Sbjct: 489 TPTLSTFNMLMSVCATSQDSAGAFQVLQLVREAGLKADCKLYTTLISTCAKSGKVDAMFE 548

Query: 103 LLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS 162
           +  ++    + P    Y A++ G  R   V  A      M    V+PD   F+ LI  C 
Sbjct: 549 VFHEMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVEPDRVVFNALITACG 608

Query: 163 NEEDIIKYYEQLKSAGGQITK-----YVFMALINAYTTCGEFEKARQV--VLDAEIPVKS 215
               + + ++ L     +            ALI A T  G+ ++AR+V  ++D +  +K 
Sbjct: 609 QSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACTNAGQVDRAREVYKMID-QYNIKG 667

Query: 216 RSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLL 275
             EV +  VS+ +  G    A  VY ++   G   +   + ALI+     G+L+   +++
Sbjct: 668 TPEVYTIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEMFLSALIDVAGHAGKLDAAFEVI 727

Query: 276 EEVH 279
           +E  
Sbjct: 728 QEAR 731



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/261 (20%), Positives = 113/261 (43%), Gaps = 9/261 (3%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           AKL  TP+ +++  L++          A  V++ + +  L    +   +++  C +S + 
Sbjct: 484 AKLIPTPTLSTFNMLMSVCATSQDSAGAFQVLQLVREAGLKADCKLYTTLISTCAKSGKV 543

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           + +  ++  + +  ++PN  T+ ++I    +      A+     ++   + P   ++NA+
Sbjct: 544 DAMFEVFHEMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVEPDRVVFNAL 603

Query: 123 MAGYFRKKDVQGALMVLKEM--EQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSA 177
           +    +   V  A  VL EM  E   + PD  T   LI  C+N   + +    Y+ +   
Sbjct: 604 ITACGQSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACTNAGQVDRAREVYKMIDQY 663

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDA 236
             + T  V+   +++++  G++E A  V  D     V       SAL+  +A H    DA
Sbjct: 664 NIKGTPEVYTIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEMFLSALID-VAGHAGKLDA 722

Query: 237 IIVYEEIKEAGCNLEPRAVIA 257
              +E I+EA     P  +++
Sbjct: 723 --AFEVIQEARIQGIPLGIVS 741



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/271 (20%), Positives = 113/271 (41%), Gaps = 6/271 (2%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           Y  LI+      KV    +V  +MV  E+ P+  T  +++  C  + +       Y ++ 
Sbjct: 530 YTTLISTCAKSGKVDAMFEVFHEMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMR 589

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMN--LMPTASMYNAIMAGYFRKKD 131
              ++P+   F ++I+   +    D A+ +L +++     + P      A++        
Sbjct: 590 SKKVEPDRVVFNALITACGQSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACTNAGQ 649

Query: 132 VQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKYYEQLKSAGGQITKYVFMA 188
           V  A  V K ++Q N+K   + ++  + + S   D       Y  +   G    +    A
Sbjct: 650 VDRAREVYKMIDQYNIKGTPEVYTIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEMFLSA 709

Query: 189 LINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAG 247
           LI+     G+ + A +V+ +A I       V  S+L+ A ++      A+ +Y +IK   
Sbjct: 710 LIDVAGHAGKLDAAFEVIQEARIQGIPLGIVSYSSLMGACSNAKNWQKALELYVDIKSMK 769

Query: 248 CNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            N     + ALI  L    +L + +++L ++
Sbjct: 770 LNPTVSTMNALITALCEGEQLEKAMEVLSDM 800



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 68/157 (43%), Gaps = 4/157 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVV-EQMVQGELVP-STETINSILHACEESYEFNL 64
           + P       LI  +    K+  A +V+ E  +QG  +P    + +S++ AC  +  +  
Sbjct: 700 VVPDEMFLSALIDVAGHAGKLDAAFEVIQEARIQG--IPLGIVSYSSLMGACSNAKNWQK 757

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
              +Y  I    L P   T  ++I+   + +  + A  +L D+K   L P    Y+ ++ 
Sbjct: 758 ALELYVDIKSMKLNPTVSTMNALITALCEGEQLEKAMEVLSDMKRAGLCPNTITYSILLV 817

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC 161
              +K D+   LM+L +  + +V P+      L+  C
Sbjct: 818 ASEKKDDIDVGLMILSQARKDSVAPNLVMCRCLVGMC 854



 Score = 45.4 bits (106), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 47/85 (55%)

Query: 83  TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM 142
           ++ S++      K++  A  L  D+K M L PT S  NA++      + ++ A+ VL +M
Sbjct: 741 SYSSLMGACSNAKNWQKALELYVDIKSMKLNPTVSTMNALITALCEGEQLEKAMEVLSDM 800

Query: 143 EQANVKPDSQTFSYLIHNCSNEEDI 167
           ++A + P++ T+S L+     ++DI
Sbjct: 801 KRAGLCPNTITYSILLVASEKKDDI 825


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 111/247 (44%), Gaps = 24/247 (9%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL++  QM + ++ P    + S+L+A     +    R I+  +    L+   +   S+ +
Sbjct: 206 ALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNT 265

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K     +A  L D +K  NL+    ++NA+++GY +    + A+ +  EM   +V+P
Sbjct: 266 MYAKCGQVATAKILFDKMKSPNLI----LWNAMISGYAKNGFAKDAIDLFHEMINKDVRP 321

Query: 150 DSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK-------YVFMALINAYTTCGEFEKA 202
           D+ + +  I  C+     +   EQ +     +++       ++  ALI+ +  CG  E A
Sbjct: 322 DTISITSAISACAQ----VGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECA 377

Query: 203 RQV---VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALI 259
           R V    LD ++       V SA++     HG+  +AI +Y  ++  G +      + L+
Sbjct: 378 RSVFDRTLDRDVV------VWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLL 431

Query: 260 EHLNSEG 266
              N  G
Sbjct: 432 IACNHSG 438



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 13/204 (6%)

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
           +R+I+  +    L+ +      +I  +    D   A  + DDL    + P    +NAI+ 
Sbjct: 37  LRQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFP----WNAIIR 92

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQI 181
           GY R    Q AL++  +M+ A V PDS TF +L+  C     +      + Q+   G + 
Sbjct: 93  GYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEA 152

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVY 240
             +V   LI  Y  C     AR V     +P+  R+ V  +A+VSA A +G   +A+ ++
Sbjct: 153 DVFVQNGLIALYAKCRRLGCARTVF--EGLPLPERTIVSWTAIVSAYAQNGEPVEALEIF 210

Query: 241 EEIKEAGCNLEPRAVIALIEHLNS 264
            ++++   +++P  V AL+  LN+
Sbjct: 211 SQMRKM--DVKPDCV-ALVSVLNA 231


>gi|255660926|gb|ACU25632.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 484

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 145/333 (43%), Gaps = 32/333 (9%)

Query: 36  QMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIK 95
           +M+   + P+  T N ++     S +     R +  +    + P+  T+ +MI+   ++K
Sbjct: 140 KMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVITYNTMINGYCRVK 199

Query: 96  DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFS 155
             + A     ++K  N+ PT   Y  ++ GY     V  AL +++EM+   +KP++ T+S
Sbjct: 200 KMEEAEKYFVEMKGKNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYS 259

Query: 156 YLIHNCSNEEDIIKYYEQLKSAGGQITKY-------VFMALINAYTTCGEFEKARQVVLD 208
            L+    N E + +    LK     + KY       +FM LI+++   G  + A   VL 
Sbjct: 260 TLLPGLCNAEKMSEARSILKE---MVDKYIAPTDNSIFMRLISSHCKVGNLDAAAD-VLK 315

Query: 209 AEIPVKSRSEVK--SALVSALASHGRTSDAIIVYEEIKE--------AGCNLEPRAVIAL 258
           A I +   +E      L+      G+   A+ + +++ E        +  ++EP A   +
Sbjct: 316 AMIRLSVPTEAGHYGVLIENYCKAGQYDQAVKLLDKLIEKDIIVRPQSTLHMEPSAYNPI 375

Query: 259 IEHLNSEGELNRLIQLLEE-----VHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKD 313
           +E+L + G+ ++   L+ +     V DP         LI    +     SA +LLK +  
Sbjct: 376 VEYLCNNGQTSKAEALVRQLMKLGVQDP----TALNTLIRGHSQEGSPDSAFELLKIMLR 431

Query: 314 KFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLD 346
           +  D E +   + S +   +  ++P D +  LD
Sbjct: 432 RKVDSEKSA--YDSLVQSYLKKSEPADAKAALD 462



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 52/281 (18%), Positives = 122/281 (43%), Gaps = 43/281 (15%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           EI+P   +Y  +I   C + K+  A     +M    + P+  T  +++       + +  
Sbjct: 180 EISPDVITYNTMINGYCRVKKMEEAEKYFVEMKGKNIEPTVVTYTTLIKGYVSVDQVDDA 239

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPT-ASMYNAIMA 124
            R+   +  + +KPN+ T+ +++      +    A S+L ++ +  + PT  S++  +++
Sbjct: 240 LRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYIAPTDNSIFMRLIS 299

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKY 184
            + +  ++  A  VLK M + +V  ++  +  LI N                        
Sbjct: 300 SHCKVGNLDAAADVLKAMIRLSVPTEAGHYGVLIEN------------------------ 335

Query: 185 VFMALINAYTTCGEFEKARQV---VLDAEIPVKSRSEVK------SALVSALASHGRTSD 235
                   Y   G++++A ++   +++ +I V+ +S +       + +V  L ++G+TS 
Sbjct: 336 --------YCKAGQYDQAVKLLDKLIEKDIIVRPQSTLHMEPSAYNPIVEYLCNNGQTSK 387

Query: 236 AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276
           A  +  ++ + G   +P A+  LI   + EG  +   +LL+
Sbjct: 388 AEALVRQLMKLGVQ-DPTALNTLIRGHSQEGSPDSAFELLK 427


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 130/309 (42%), Gaps = 42/309 (13%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P++ +Y +LI   C   KVH A+ ++ +M++ +L PS  T NS++H   +  +     R+
Sbjct: 402 PNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRL 461

Query: 69  YPMICHHNLKPNSETFR-----------------------------------SMISLNVK 93
             ++  + L P+  T+                                    ++I    K
Sbjct: 462 LSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCK 521

Query: 94  IKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQT 153
           +   D AYSLL+ +     +P +  YN ++ G  ++K ++ A  ++ +M    VKP   T
Sbjct: 522 VGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVT 581

Query: 154 FSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA- 209
           ++ LI     +   +  +K +  + S G Q     + A ++AY + G  E+   V+    
Sbjct: 582 YTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMN 641

Query: 210 EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN 269
           E  +       + L+   A  G T  A    + + + GC      V  LI++L+ E   N
Sbjct: 642 EEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHE---N 698

Query: 270 RLIQLLEEV 278
           R+ +   E+
Sbjct: 699 RMKETRSEI 707



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/268 (20%), Positives = 106/268 (39%), Gaps = 36/268 (13%)

Query: 17  LITYSCDLLKVHVALDVVEQM-VQGELV--PSTETINSILHACEESYEFNLVRRIYPMIC 73
           +I   C +  V   L+V  +M   GE    P+    N+IL +  +    + ++ +Y  + 
Sbjct: 127 MIKSCCSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELL 186

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
           ++ + PN  TF +M++   KI +   A      + +  L P    Y +++ G+ R K V 
Sbjct: 187 NNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVD 246

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAY 193
            A  V   M Q   + +  +++ LIH                                  
Sbjct: 247 NAYEVFLIMPQKGCQRNEVSYTNLIH--------------------------------GL 274

Query: 194 TTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP 252
              G   +A ++  D  E          + L+ AL+  GR  +A+ ++ E+KE GC    
Sbjct: 275 CEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNV 334

Query: 253 RAVIALIEHLNSEGELNRLIQLLEEVHD 280
                LI+ L  E +++   ++L E+ +
Sbjct: 335 HTYTVLIDGLCKENKMDEARKMLSEMSE 362



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/243 (20%), Positives = 102/243 (41%), Gaps = 4/243 (1%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL++  +M +    P+  T   ++    +  + +  R++   +    L P+  T+ ++I 
Sbjct: 318 ALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALID 377

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              K    D A+ +LD ++  +  P    YN ++ G  +K+ V  A+ +L +M +  + P
Sbjct: 378 GYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSP 437

Query: 150 DSQTFSYLIHNCSNEEDIIKYYE--QLKSAGGQIT-KYVFMALINAYTTCGEFEKARQVV 206
              T++ LIH      D+   Y    L +  G +  ++ +   I+     G  E+A  + 
Sbjct: 438 SLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLF 497

Query: 207 LDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
              +   VK+   + +AL+      G+   A  + E +    C         LIE L  E
Sbjct: 498 DSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKE 557

Query: 266 GEL 268
            ++
Sbjct: 558 KKM 560



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/278 (20%), Positives = 111/278 (39%), Gaps = 11/278 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + PS  +Y  LI   C    +  A ++++ M      P+T T N ++    +  + +   
Sbjct: 365 LIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAM 424

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +    L P+  T+ S+I    K+ D +SAY LL  + E  L+P    Y+  +   
Sbjct: 425 ALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTL 484

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEEDIIKY--YEQLKSAGGQITK 183
            ++  V+ A  +   ++   VK +   ++ LI   C   +  + Y   E++ +       
Sbjct: 485 CKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNS 544

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           Y +  LI       + ++A  +V     + VK      + L+  +   G    A+ V+  
Sbjct: 545 YTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNH 604

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           +   G   +     A +    S+G       +LEEV D
Sbjct: 605 MVSLGYQPDVCTYTAFLHAYFSQG-------MLEEVDD 635



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 86/436 (19%), Positives = 175/436 (40%), Gaps = 38/436 (8%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +I+P+  ++  ++   C +  V  A     ++VQ  L P T T  S++     +   +  
Sbjct: 189 QISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNA 248

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI--- 122
             ++ ++     + N  ++ ++I    +    + A  L  D+ E N  PT   Y  +   
Sbjct: 249 YEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYA 308

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK--SAGGQ 180
           ++G  RK +   AL +  EM++   +P+  T++ LI     E  + +  + L   S  G 
Sbjct: 309 LSGSGRKVE---ALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGL 365

Query: 181 ITKYV-FMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAII 238
           I   V + ALI+ Y   G  + A +++ L         +   + L+  L    +   A+ 
Sbjct: 366 IPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMA 425

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELN------RLIQLLEEVH-DPDYW-----MD 286
           +  ++ E    L P ++I     ++ + ++N      RL+ L+ E    PD W     +D
Sbjct: 426 LLNKMLER--KLSP-SLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFID 482

Query: 287 GCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLD 346
             C       +  ++  A  L   +K K       +     + +C++   D     +   
Sbjct: 483 TLC-------KEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKID-----VAYS 530

Query: 347 LLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAF 406
           LL+ + ++  LP S      + G C   + +K A  +  +    G+   V++Y  +    
Sbjct: 531 LLERMLNDACLPNSYTYNVLIEGLC-KEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEM 589

Query: 407 LASGNRKSASKLLSKM 422
           L  G    A K+ + M
Sbjct: 590 LKDGAFDHALKVFNHM 605


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 106/238 (44%), Gaps = 20/238 (8%)

Query: 37  MVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKD 96
           + QG    S  +I S L AC       +  +++ ++    +  +     S++S+  K   
Sbjct: 331 LAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGL 390

Query: 97  FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSY 156
            D A +L D   EM +  T S Y+A+++GY +    + A +V K+M+  NV+PD+ T   
Sbjct: 391 IDQAIALFD---EMAVKDTVS-YSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVS 446

Query: 157 LIHNCSNEEDIIKYYEQLKSAGGQIT-------KYVFMALINAYTTCGEFEKARQVVLDA 209
           LI  CS+    +   +  + + G +          +  ALI+ Y  CG  + +RQV    
Sbjct: 447 LIPACSH----LAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVF--N 500

Query: 210 EIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
            +P  SR  V  + +++    HG   +A  ++ E+   G   +    I L+   +  G
Sbjct: 501 MMP--SRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSG 556


>gi|356529805|ref|XP_003533478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
           chloroplastic-like [Glycine max]
          Length = 1092

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 100/209 (47%), Gaps = 9/209 (4%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMV--QGELVPSTETINSILHACEESYEFNL 64
           + P    +  LI        +  A DV+ +M      + P   TI ++L AC ++ +   
Sbjct: 561 VKPDRVVFNALIAACAQSGALDRAFDVLAEMTAETQPIDPDHVTIGALLKACTKAGQVER 620

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM- 123
            + +Y M+  +N+K   E +   I+   +  D++ A+++ +D+ +  ++P     +A++ 
Sbjct: 621 AKEVYKMVQKYNIKGCPEVYTIAINSCSQTGDWEFAHTVYNDMTQKGILPDEIFLSALID 680

Query: 124 -AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---IIKYYEQLKSAGG 179
            AG+ +K D   A  VL+E  +  +     ++S L+  CSN  +    ++ YE LKS   
Sbjct: 681 VAGHAKKLDA--AFDVLQEARKGGILIGIMSYSSLMGACSNARNWQKALELYEYLKSLKL 738

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLD 208
            IT     AL+ A     +F+KA +V+ +
Sbjct: 739 TITVSTVNALLTALCDGDQFQKALEVLFE 767



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 73/363 (20%), Positives = 143/363 (39%), Gaps = 16/363 (4%)

Query: 44  PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103
           P   T N ++  C  S +     ++  ++    L+P+ + + ++I    K    D  + +
Sbjct: 458 PMLSTFNMLMSVCASSQDSEGAFQVLQLLKDARLEPDCKLYTTLILTCAKSGKVDLMFEV 517

Query: 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163
              +    + P    Y A++ G  R   V  A      M   NVKPD   F+ LI  C+ 
Sbjct: 518 FHKMVNSGVEPNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIAACAQ 577

Query: 164 EEDIIKYYEQLKSAGGQITK-----YVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRS 217
              + + ++ L     +            AL+ A T  G+ E+A++V  +  +  +K   
Sbjct: 578 SGALDRAFDVLAEMTAETQPIDPDHVTIGALLKACTKAGQVERAKEVYKMVQKYNIKGCP 637

Query: 218 EVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEE 277
           EV +  +++ +  G    A  VY ++ + G   +   + ALI+      +L+    +L+E
Sbjct: 638 EVYTIAINSCSQTGDWEFAHTVYNDMTQKGILPDEIFLSALIDVAGHAKKLDAAFDVLQE 697

Query: 278 VHDPDYWMD--GCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQI-A 334
                  +       L+  C   +    A +L + LK       + +    S +   + A
Sbjct: 698 ARKGGILIGIMSYSSLMGACSNARNWQKALELYEYLKS------LKLTITVSTVNALLTA 751

Query: 335 TTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPY 394
             D    Q  L++L F    LGL P+      L+ A     D++ A ++    +  G+  
Sbjct: 752 LCDGDQFQKALEVL-FEMKGLGLRPNSITFSILIVASEKKDDMEAAQMLLSLAKKDGVVP 810

Query: 395 NVL 397
           N++
Sbjct: 811 NLI 813



 Score = 41.6 bits (96), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 28/144 (19%), Positives = 64/144 (44%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P       LI  +    K+  A DV+++  +G ++    + +S++ AC  +  +    
Sbjct: 668 ILPDEIFLSALIDVAGHAKKLDAAFDVLQEARKGGILIGIMSYSSLMGACSNARNWQKAL 727

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +Y  +    L     T  ++++       F  A  +L ++K + L P +  ++ ++   
Sbjct: 728 ELYEYLKSLKLTITVSTVNALLTALCDGDQFQKALEVLFEMKGLGLRPNSITFSILIVAS 787

Query: 127 FRKKDVQGALMVLKEMEQANVKPD 150
            +K D++ A M+L   ++  V P+
Sbjct: 788 EKKDDMEAAQMLLSLAKKDGVVPN 811


>gi|357491817|ref|XP_003616196.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517531|gb|AES99154.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 981

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 97/208 (46%), Gaps = 25/208 (12%)

Query: 61  EFNLVRRIYPMICHHN-------------LKPNSETFRSMISLNVKIKDFDSAYSLLDDL 107
           EFN++ + Y    H++             + P   T+ S+I +       D A  L  ++
Sbjct: 502 EFNVMIKAYGKANHYDKAVLLFEEMKYQGISPADSTYNSIIQMLSGADLVDQARDLTVEM 561

Query: 108 KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE--- 164
           +EM   P    ++A++  Y R   +  A++V +EM  A VKP+   +  LI+  +     
Sbjct: 562 QEMGFKPHCQTFSAVIGCYARLGQLSDAVIVYQEMISAGVKPNETVYGALINGFAEHGRL 621

Query: 165 EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV-----LDAEIPVKSRSEV 219
           ++ ++Y+  ++ +G      V   L+ +Y+  G+ +  + +      ++  + + +R   
Sbjct: 622 DEALQYFHLMQESGLSANLVVLTTLMKSYSKAGDLKGVKSIYKQMQNMEGVLDLAAR--- 678

Query: 220 KSALVSALASHGRTSDAIIVYEEIKEAG 247
            S++++A A  G  S+A + +E+ KE G
Sbjct: 679 -SSMITAFAELGLVSEAKLTFEKFKETG 705



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 60/305 (19%), Positives = 124/305 (40%), Gaps = 11/305 (3%)

Query: 11  SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYP 70
           S +Y  LI       ++  A DV   M++  +   T T N+++              +  
Sbjct: 293 STTYNTLIDLYGKAGRLKDAADVFADMMKSGVAMDTCTFNTLIFISGSHGNLLEAESLLD 352

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130
            +    +  N+ T+   +SL       D+A S    ++E+ L P    Y A++     + 
Sbjct: 353 KMEERGISSNTRTYNIFLSLYATAGSIDAALSYYRRIREVGLFPDTVTYRALLGALCTEN 412

Query: 131 DVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALI 190
            VQ    V+ EME+ +V  D+ + S ++    NE D+ K  + L+   G+   ++  A+I
Sbjct: 413 MVQAVEGVIDEMEKNSVSLDALSLSGIVKMYINEGDVDKANDLLQKY-GEPPSFICAAII 471

Query: 191 NAYTTCGEFEKARQVVLDAEIPVKSRSEVK--SALVSALASHGRTSDAIIVYEEIKEAGC 248
           +A+   G + +A  +        +   ++   + ++ A         A++++EE+K  G 
Sbjct: 472 DAFAEKGFWAEAENIFYRKRDKARQARDILEFNVMIKAYGKANHYDKAVLLFEEMKYQGI 531

Query: 249 NLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLL 308
           +       ++I+ L+    +++   L  E+ +  +          HC  F  +      L
Sbjct: 532 SPADSTYNSIIQMLSGADLVDQARDLTVEMQEMGFKP--------HCQTFSAVIGCYARL 583

Query: 309 KQLKD 313
            QL D
Sbjct: 584 GQLSD 588



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/254 (21%), Positives = 100/254 (39%), Gaps = 42/254 (16%)

Query: 84  FRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME 143
           F  MI    K   +D A  L +++K   + P  S YN+I+        V  A  +  EM+
Sbjct: 503 FNVMIKAYGKANHYDKAVLLFEEMKYQGISPADSTYNSIIQMLSGADLVDQARDLTVEMQ 562

Query: 144 QANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFE 200
           +   KP  QTFS +I          D +  Y+++ SAG                      
Sbjct: 563 EMGFKPHCQTFSAVIGCYARLGQLSDAVIVYQEMISAG---------------------- 600

Query: 201 KARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE 260
                       VK    V  AL++  A HGR  +A+  +  ++E+G +     +  L++
Sbjct: 601 ------------VKPNETVYGALINGFAEHGRLDEALQYFHLMQESGLSANLVVLTTLMK 648

Query: 261 HLNSEGELNRLIQLLEEVHDPDYWMDGCCR--LILHCVRFKQLSSATDLLKQLKDKFKDD 318
             +  G+L  +  + +++ + +  +D   R  +I        +S A    ++ K+  + D
Sbjct: 649 SYSKAGDLKGVKSIYKQMQNMEGVLDLAARSSMITAFAELGLVSEAKLTFEKFKETGQAD 708

Query: 319 EMA---MEYHFSEI 329
             +   M Y + +I
Sbjct: 709 STSYGIMMYVYKDI 722



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 68/319 (21%), Positives = 136/319 (42%), Gaps = 22/319 (6%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           I+ ++ +Y   ++       +  AL    ++ +  L P T T  ++L A C E    N+V
Sbjct: 359 ISSNTRTYNIFLSLYATAGSIDAALSYYRRIREVGLFPDTVTYRALLGALCTE----NMV 414

Query: 66  RRIYPMICH---HNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           + +  +I     +++  ++ +   ++ + +   D D A  LL    E    P + +  AI
Sbjct: 415 QAVEGVIDEMEKNSVSLDALSLSGIVKMYINEGDVDKANDLLQKYGE----PPSFICAAI 470

Query: 123 MAGYFRKKDVQGALMVL-KEMEQANVKPDSQTFSYLI--HNCSNEED-IIKYYEQLKSAG 178
           +  +  K     A  +  ++ ++A    D   F+ +I  +  +N  D  +  +E++K  G
Sbjct: 471 IDAFAEKGFWAEAENIFYRKRDKARQARDILEFNVMIKAYGKANHYDKAVLLFEEMKYQG 530

Query: 179 GQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAI 237
                  + ++I   +     ++AR + ++  E+  K   +  SA++   A  G+ SDA+
Sbjct: 531 ISPADSTYNSIIQMLSGADLVDQARDLTVEMQEMGFKPHCQTFSAVIGCYARLGQLSDAV 590

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVR 297
           IVY+E+  AG         ALI      G L+  +Q    + +          L++    
Sbjct: 591 IVYQEMISAGVKPNETVYGALINGFAEHGRLDEALQYFHLMQESGL----SANLVVLTTL 646

Query: 298 FKQLSSATDLLKQLKDKFK 316
            K  S A D LK +K  +K
Sbjct: 647 MKSYSKAGD-LKGVKSIYK 664


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 108/246 (43%), Gaps = 9/246 (3%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           TP   +Y  +I   C   ++  A+D+ E+M      P+  T NS++     + + +   R
Sbjct: 252 TPDIVTYSTVIDGLCKAGRLRDAVDIFEEM---SCAPTAITYNSLIGGYCRAGDMDEAIR 308

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +   +   N  P+  T+ +++S   K+   D AY L   +    L P    + +++ G  
Sbjct: 309 LLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLC 368

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKY 184
            +  ++ AL +L+E+ +    P   T++ ++        + K  E     +S G      
Sbjct: 369 GEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTV 428

Query: 185 VFMALINAYTTCGEFEKARQVV--LDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
            +  L+      G  ++A Q +  L++E  P  +   + + ++ AL   GRT DA+  YE
Sbjct: 429 TYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYE 488

Query: 242 EIKEAG 247
           E+ + G
Sbjct: 489 EMIQRG 494



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/348 (19%), Positives = 129/348 (37%), Gaps = 82/348 (23%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y KL+       ++  A+ V+++MV    VP   T+  ++ +       +  R +
Sbjct: 147 PDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDAREL 206

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLL------------------------ 104
              + H  +  N+ T+ +++    K +  D A +LL                        
Sbjct: 207 VEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLC 266

Query: 105 ---------DDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN--------- 146
                    D  +EM+  PTA  YN+++ GY R  D+  A+ +L +M   N         
Sbjct: 267 KAGRLRDAVDIFEEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYT 326

Query: 147 --------------------------VKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSA 177
                                     + PD  TF+ L+     E   ED ++  E++   
Sbjct: 327 TLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRR 386

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSA-----LVSALASHGR 232
           G   T Y +  +++ Y    +  KA ++V D     +SR  V +      LV+     GR
Sbjct: 387 GCPPTIYTYNCVVDGYCKSNQVRKAEELVAD----FRSRGFVPNTVTYNILVAGCCRAGR 442

Query: 233 TSDAIIVYEEIKEAG--CNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           T  A+   +++   G  C         +++ L  +G  +  +Q  EE+
Sbjct: 443 TDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEM 490


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 130/309 (42%), Gaps = 42/309 (13%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P++ +Y +LI   C   KVH A+ ++ +M++ +L PS  T NS++H   +  +     R+
Sbjct: 402 PNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRL 461

Query: 69  YPMICHHNLKPNSETFR-----------------------------------SMISLNVK 93
             ++  + L P+  T+                                    ++I    K
Sbjct: 462 LSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCK 521

Query: 94  IKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQT 153
           +   D AYSLL+ +     +P +  YN ++ G  ++K ++ A  ++ +M    VKP   T
Sbjct: 522 VGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVT 581

Query: 154 FSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA- 209
           ++ LI     +   +  +K +  + S G Q     + A ++AY + G  E+   V+    
Sbjct: 582 YTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMN 641

Query: 210 EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN 269
           E  +       + L+   A  G T  A    + + + GC      V  LI++L+ E   N
Sbjct: 642 EEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHE---N 698

Query: 270 RLIQLLEEV 278
           R+ +   E+
Sbjct: 699 RMKETRSEI 707



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 126/294 (42%), Gaps = 25/294 (8%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESY---EFNLVRRIY 69
           Y  LI   C + K+ VA  ++E+M+    +P++ T N ++   C+E       +LV ++ 
Sbjct: 512 YTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKML 571

Query: 70  PMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129
            M     +KP   T+  +I   +K   FD A  + + +  +   P    Y A +  YF +
Sbjct: 572 TM----GVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQ 627

Query: 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK---SAGGQITKYVF 186
             ++    V+ +M +  + PD  T++ LI   +      + ++ LK     G + + Y+ 
Sbjct: 628 GMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIV 687

Query: 187 MALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA 246
             LI   +     ++ R     +EI + S S V S  ++ +        A+ ++E++ E 
Sbjct: 688 SILIKNLSHENRMKETR-----SEIGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEH 742

Query: 247 GCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDP---------DYWMDGCCRL 291
           GC ++     ALI     +  L     L+  + +          +  +D CC+L
Sbjct: 743 GCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKL 796



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/268 (20%), Positives = 106/268 (39%), Gaps = 36/268 (13%)

Query: 17  LITYSCDLLKVHVALDVVEQM-VQGELV--PSTETINSILHACEESYEFNLVRRIYPMIC 73
           +I   C +  V   L+V  +M   GE    P+    N+IL +  +    + ++ +Y  + 
Sbjct: 127 MIKSCCSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELL 186

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
           ++ + PN  TF +M++   KI +   A      + +  L P    Y +++ G+ R K V 
Sbjct: 187 NNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVD 246

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAY 193
            A  V   M Q   + +  +++ LIH                                  
Sbjct: 247 NAYEVFLIMPQKGCQRNEVSYTNLIH--------------------------------GL 274

Query: 194 TTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP 252
              G   +A ++  D  E          + L+ AL+  GR  +A+ ++ E+KE GC    
Sbjct: 275 CEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNV 334

Query: 253 RAVIALIEHLNSEGELNRLIQLLEEVHD 280
                LI+ L  E +++   ++L E+ +
Sbjct: 335 HTYTVLIDGLCKENKMDEARKMLSEMSE 362



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/243 (20%), Positives = 102/243 (41%), Gaps = 4/243 (1%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           AL++  +M +    P+  T   ++    +  + +  R++   +    L P+  T+ ++I 
Sbjct: 318 ALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALID 377

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              K    D A+ +LD ++  +  P    YN ++ G  +K+ V  A+ +L +M +  + P
Sbjct: 378 GYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSP 437

Query: 150 DSQTFSYLIHNCSNEEDIIKYYE--QLKSAGGQIT-KYVFMALINAYTTCGEFEKARQVV 206
              T++ LIH      D+   Y    L +  G +  ++ +   I+     G  E+A  + 
Sbjct: 438 SLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLF 497

Query: 207 LDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265
              +   VK+   + +AL+      G+   A  + E +    C         LIE L  E
Sbjct: 498 DSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKE 557

Query: 266 GEL 268
            ++
Sbjct: 558 KKM 560



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/278 (20%), Positives = 111/278 (39%), Gaps = 11/278 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + PS  +Y  LI   C    +  A ++++ M      P+T T N ++    +  + +   
Sbjct: 365 LIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAM 424

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +    L P+  T+ S+I    K+ D +SAY LL  + E  L+P    Y+  +   
Sbjct: 425 ALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTL 484

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEEDIIKY--YEQLKSAGGQITK 183
            ++  V+ A  +   ++   VK +   ++ LI   C   +  + Y   E++ +       
Sbjct: 485 CKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNS 544

Query: 184 YVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
           Y +  LI       + ++A  +V     + VK      + L+  +   G    A+ V+  
Sbjct: 545 YTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNH 604

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           +   G   +     A +    S+G       +LEEV D
Sbjct: 605 MVSLGYQPDVCTYTAFLHAYFSQG-------MLEEVDD 635



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 86/436 (19%), Positives = 175/436 (40%), Gaps = 38/436 (8%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +I+P+  ++  ++   C +  V  A     ++VQ  L P T T  S++     +   +  
Sbjct: 189 QISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNA 248

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI--- 122
             ++ ++     + N  ++ ++I    +    + A  L  D+ E N  PT   Y  +   
Sbjct: 249 YEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYA 308

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK--SAGGQ 180
           ++G  RK +   AL +  EM++   +P+  T++ LI     E  + +  + L   S  G 
Sbjct: 309 LSGSGRKVE---ALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGL 365

Query: 181 ITKYV-FMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAII 238
           I   V + ALI+ Y   G  + A +++ L         +   + L+  L    +   A+ 
Sbjct: 366 IPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMA 425

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELN------RLIQLLEEVH-DPDYW-----MD 286
           +  ++ E    L P ++I     ++ + ++N      RL+ L+ E    PD W     +D
Sbjct: 426 LLNKMLER--KLSP-SLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFID 482

Query: 287 GCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLD 346
             C       +  ++  A  L   +K K       +     + +C++   D     +   
Sbjct: 483 TLC-------KEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKID-----VAYS 530

Query: 347 LLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAF 406
           LL+ + ++  LP S      + G C   + +K A  +  +    G+   V++Y  +    
Sbjct: 531 LLERMLNDACLPNSYTYNVLIEGLC-KEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEM 589

Query: 407 LASGNRKSASKLLSKM 422
           L  G    A K+ + M
Sbjct: 590 LKDGAFDHALKVFNHM 605


>gi|21618238|gb|AAM67288.1| unknown [Arabidopsis thaliana]
          Length = 463

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/283 (21%), Positives = 122/283 (43%), Gaps = 11/283 (3%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L + P   +Y  LI      + +  A  V  +M +  + P   T NS++    ++   N
Sbjct: 36  RLGVLPDVITYNTLIKGYTRFIGIDEAYAVTRRMREAGIEPDVTTYNSLISGAAKNLMLN 95

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLL-DDLKEMNLMPTASMYNAI 122
            V +++  + H  L P+  ++ +++S   K+     A+ +L +D+    L+P    YN +
Sbjct: 96  RVLQLFDEMLHSGLSPDMWSYNTLMSCYFKLGRHGEAFKILHEDIHLAGLVPGIDTYNIL 155

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY---YEQLKSAGG 179
           +    +      A+ + K + ++ VKP+  T++ LI+       +        +LK +G 
Sbjct: 156 LDALCKSGHTDNAIELFKHL-KSRVKPELMTYNILINGLCKSRRVGSVDWMMRELKKSGY 214

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS-ALVSALASHGRTSDAII 238
                 +  ++  Y      EK  Q+ L  +    +     + A+VSAL   GR  +A  
Sbjct: 215 TPNAVTYTTMLKMYFKTKRIEKGLQLFLKMKKEGYTFDGFANCAVVSALIKTGRAEEAYE 274

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLN---SEGELNRLIQLLEEV 278
              E+  +G     + +++    LN    +G L+ +  LLEE+
Sbjct: 275 CMHELVRSGT--RSQDIVSYNTLLNLYFKDGNLDAVDDLLEEI 315



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 83/176 (47%), Gaps = 13/176 (7%)

Query: 79  PNSETFRSMISLN--VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGAL 136
           P   T    IS+N   K ++ + A +LL D   + ++P    YN ++ GY R   +  A 
Sbjct: 4   PGISTKLLNISVNSLCKFRNLERAETLLIDGIRLGVLPDVITYNTLIKGYTRFIGIDEAY 63

Query: 137 MVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAY 193
            V + M +A ++PD  T++ LI   +       +++ ++++  +G     + +  L++ Y
Sbjct: 64  AVTRRMREAGIEPDVTTYNSLISGAAKNLMLNRVLQLFDEMLHSGLSPDMWSYNTLMSCY 123

Query: 194 TTCGEFEKARQVV-----LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
              G   +A +++     L   +P     +  + L+ AL   G T +AI +++ +K
Sbjct: 124 FKLGRHGEAFKILHEDIHLAGLVP---GIDTYNILLDALCKSGHTDNAIELFKHLK 176


>gi|298711207|emb|CBJ32428.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 870

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/318 (20%), Positives = 124/318 (38%), Gaps = 40/318 (12%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           M  K  + P + +Y  +I       +V  A   +  M +  L P   T  +++HAC +S 
Sbjct: 276 MKKKAGVKPDNVTYNTVINALGRCGRVKEATVHLHAMKEQGLSPDVVTFGTLIHACAQSA 335

Query: 61  EFNLVRRIYPMICHHNLKPNSET-----------------------------------FR 85
           +      ++  +    LKPN E                                    F 
Sbjct: 336 KREPALALFAELVSRGLKPNLEAYKGCIVSCHKTGHYQQGLDLFNRMLADKVRMDRVVFN 395

Query: 86  SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145
           + I+   ++K +    ++LD+++E  + P    YN+ + G  + +  Q   MVL  M + 
Sbjct: 396 TAIACCAQLKLWRRGVAMLDEMRERKVAPDQYSYNSAIYGCVKAQQSQQMTMVLARMRED 455

Query: 146 NVKPDSQTFSYLIHNCSN----EEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEK 201
              PD  T+S LI   ++       +    + L     Q   + F A + A +  GE+ +
Sbjct: 456 GFDPDVWTYSNLIRCLADSMLWRRAVGILDDMLLEGRVQPDAHCFNAAVRACSKVGEWAE 515

Query: 202 ARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIE 260
           A ++V       +       ++L+ A  + G    A+ + EEI+ AG  +   A  A I+
Sbjct: 516 AERLVTGMRGQGLAPDKYTYNSLIYAYGNSGEWEKALSMLEEIRAAGFKVNCMAYSAAIK 575

Query: 261 HLNSEGELNRLIQLLEEV 278
             +   +  R ++LL+ +
Sbjct: 576 ACDKAFQWERALELLDRM 593



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 40/201 (19%), Positives = 88/201 (43%), Gaps = 6/201 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVH-VALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           + P++ +Y  L+   C L       L+++  M    + P+    NS+  A E    +   
Sbjct: 141 LAPTAITYNVLLRL-CGLGGCWATGLELMGMMEDEGITPNPYHYNSMFMALERGERWREA 199

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             ++  +     +PN+ T+  +I +  +    D A ++L ++   +   +   YN ++  
Sbjct: 200 AELFRKMRACGTRPNALTYAPLIGVMDRCNKQDMAGAVLKEMLRESPRDSTREYNLLLNA 259

Query: 126 YFRKKDVQGALMVLKEM-EQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQI 181
             + +  + A +V ++M ++A VKPD+ T++ +I+    C   ++   +   +K  G   
Sbjct: 260 CAKARKWEHAQLVFEDMKKKAGVKPDNVTYNTVINALGRCGRVKEATVHLHAMKEQGLSP 319

Query: 182 TKYVFMALINAYTTCGEFEKA 202
               F  LI+A     + E A
Sbjct: 320 DVVTFGTLIHACAQSAKREPA 340


>gi|255577487|ref|XP_002529622.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530907|gb|EEF32767.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 752

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 121/273 (44%), Gaps = 22/273 (8%)

Query: 49  INSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLK 108
           + +IL  C +     L  +I+  +       +     +++ L  K +   SA  + D L 
Sbjct: 374 LTAILDCCSDCNNLELGLQIHGFVMKLGCACDVNVATALVDLYAKCEKLQSARIVFDHLS 433

Query: 109 EMNLMPTASMYNAIMAGYFRKK-DVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI 167
              +    + +NAI+AG+     D +  +++  ++  A VKPD  TFS L+   +N+  +
Sbjct: 434 NKGI----ASFNAILAGFLESSGDEEDPMILFNQLRLAGVKPDMVTFSRLLSLLANQASL 489

Query: 168 IK---YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALV 224
            K   ++      G      V  ++I+ Y  CG  E A Q+     I     S   +AL+
Sbjct: 490 EKGRSFHAYTVKTGFDTNISVANSVISMYAKCGSIEDAHQMF---NIMNCRDSISWNALI 546

Query: 225 SALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW 284
           SA A HG+   ++ ++EE+K  G + +   ++A+++     G     I L   + +P Y 
Sbjct: 547 SAYALHGQAQKSLFLFEEMKRKGFDPDEFTILAILQACTYSGLWKDGICLF-NLMEPKY- 604

Query: 285 MDGCCRLILH--CV-----RFKQLSSATDLLKQ 310
             G   L+ H  C+     R   LS A D++K+
Sbjct: 605 --GIKPLLEHYACMADLLGRAGYLSEAMDIIKR 635



 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 11/130 (8%)

Query: 82  ETFR--SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVL 139
           +TF+  ++++L VK    D A  + D ++  N +     + +++ GY    D Q A  + 
Sbjct: 101 DTFKGNNVLNLYVKFNRLDLAQKVFDRMRTRNTIT----WTSLIKGYLEDNDFQSAFSIA 156

Query: 140 KEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK----SAGGQITKYVFMALINAYTT 195
            +M +     +  T + ++  CS+ +D I   EQ+      +G     +V  +LI  YT 
Sbjct: 157 GDMHKFGENFNEHTCTVILQACSSPDDRI-LGEQIHCFVIKSGFDENVFVGTSLIAMYTK 215

Query: 196 CGEFEKARQV 205
            G F+ A +V
Sbjct: 216 SGFFDVAEKV 225


>gi|18422700|ref|NP_568665.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635755|sp|Q56XR6.2|PP421_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46680
 gi|332008030|gb|AED95413.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 468

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/283 (21%), Positives = 122/283 (43%), Gaps = 11/283 (3%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           +L + P   +Y  LI      + +  A  V  +M +  + P   T NS++    ++   N
Sbjct: 41  RLGVLPDVITYNTLIKGYTRFIGIDEAYAVTRRMREAGIEPDVTTYNSLISGAAKNLMLN 100

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLL-DDLKEMNLMPTASMYNAI 122
            V +++  + H  L P+  ++ +++S   K+     A+ +L +D+    L+P    YN +
Sbjct: 101 RVLQLFDEMLHSGLSPDMWSYNTLMSCYFKLGRHGEAFKILHEDIHLAGLVPGIDTYNIL 160

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY---YEQLKSAGG 179
           +    +      A+ + K + ++ VKP+  T++ LI+       +        +LK +G 
Sbjct: 161 LDALCKSGHTDNAIELFKHL-KSRVKPELMTYNILINGLCKSRRVGSVDWMMRELKKSGY 219

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS-ALVSALASHGRTSDAII 238
                 +  ++  Y      EK  Q+ L  +    +     + A+VSAL   GR  +A  
Sbjct: 220 TPNAVTYTTMLKMYFKTKRIEKGLQLFLKMKKEGYTFDGFANCAVVSALIKTGRAEEAYE 279

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLN---SEGELNRLIQLLEEV 278
              E+  +G     + +++    LN    +G L+ +  LLEE+
Sbjct: 280 CMHELVRSGT--RSQDIVSYNTLLNLYFKDGNLDAVDDLLEEI 320



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 83/176 (47%), Gaps = 13/176 (7%)

Query: 79  PNSETFRSMISLN--VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGAL 136
           P   T    IS+N   K ++ + A +LL D   + ++P    YN ++ GY R   +  A 
Sbjct: 9   PGISTKLLNISVNSLCKFRNLERAETLLIDGIRLGVLPDVITYNTLIKGYTRFIGIDEAY 68

Query: 137 MVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAY 193
            V + M +A ++PD  T++ LI   +       +++ ++++  +G     + +  L++ Y
Sbjct: 69  AVTRRMREAGIEPDVTTYNSLISGAAKNLMLNRVLQLFDEMLHSGLSPDMWSYNTLMSCY 128

Query: 194 TTCGEFEKARQVV-----LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
              G   +A +++     L   +P     +  + L+ AL   G T +AI +++ +K
Sbjct: 129 FKLGRHGEAFKILHEDIHLAGLVP---GIDTYNILLDALCKSGHTDNAIELFKHLK 181


>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 804

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 99/456 (21%), Positives = 177/456 (38%), Gaps = 70/456 (15%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+ + +QM      P   T N++L    +S       ++   +  +   P S T+ S+IS
Sbjct: 283 AVHLFQQMKLEGFTPDKVTYNALLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLIS 342

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
              K    + A  L   +    + P    Y  +++G+ +      A+ V  EM     KP
Sbjct: 343 AYAKGGLLEEALDLKTQMVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKP 402

Query: 150 DSQTFSYLIH---------------------NCSNEEDIIKY------------------ 170
           +  TF+ LI                      NCS   DI+ +                  
Sbjct: 403 NICTFNALIKMHGNRGKFAEMMKVFDDIKLCNCS--PDIVTWNTLLAVFGQNGMDSQVSG 460

Query: 171 -YEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALA 228
            ++++K AG    +  F  LI+AY+ CG F++A  V     E  V       +A+++ALA
Sbjct: 461 IFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALA 520

Query: 229 SHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC 288
             G    +  V  E+++  C     +  +L+    +  E+ R+    EE++         
Sbjct: 521 RGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYANGKEIERMNAFAEEIYSGS------ 574

Query: 289 CRLILHCVRFKQL---SSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDP------- 338
             +  H V  K L   +S +DLL + +  F      +E     I   I T +        
Sbjct: 575 --VETHAVLLKTLVLVNSKSDLLIETERAF------LELRRRGISPDITTLNAMLSIYGR 626

Query: 339 -PDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVL 397
              V    ++L F+  E    PS    + L+     + + +++  I +E    G+  + +
Sbjct: 627 KQMVAKAHEILNFMH-ETRFTPSLTTYNSLMYMYSRSENFQKSEEILREVLEKGMKPDRI 685

Query: 398 SYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVI 433
           SY  +  A+  +G  K AS++ S+M KD   V  V+
Sbjct: 686 SYNTVIYAYCRNGRMKEASRIFSEM-KDSALVPDVV 720



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/258 (20%), Positives = 114/258 (44%), Gaps = 8/258 (3%)

Query: 33  VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92
           +VE M    + P   T N+++  C     +     ++  +      P+  T+ +++ +  
Sbjct: 251 LVEAMRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYNALLDVFG 310

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
           K +    A  +L +++     PT+  YN++++ Y +   ++ AL +  +M    +KPD  
Sbjct: 311 KSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVHKGIKPDVF 370

Query: 153 TFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA 209
           T++ L+        ++  I+ + ++++ G +     F ALI  +   G+F +  +V  D 
Sbjct: 371 TYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGKFAEMMKVFDDI 430

Query: 210 EIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGEL 268
           ++   S   V  + L++    +G  S    +++E+K AG   E      LI   +  G  
Sbjct: 431 KLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSF 490

Query: 269 NRLI----QLLEEVHDPD 282
           ++ +     +LE    PD
Sbjct: 491 DQAMAVYKSMLEAGVVPD 508



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 72/159 (45%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  ++  LI    +  K    + V + +      P   T N++L    ++   + V  I
Sbjct: 402 PNICTFNALIKMHGNRGKFAEMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGI 461

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +         +TF ++IS   +   FD A ++   + E  ++P  S YNA++A   R
Sbjct: 462 FKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALAR 521

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI 167
               + +  VL EME    KP+  ++S L+H  +N ++I
Sbjct: 522 GGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYANGKEI 560



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 37/189 (19%), Positives = 87/189 (46%), Gaps = 10/189 (5%)

Query: 97  FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSY 156
           + +  +L++ ++   + P    YN +++   R    + A+ + ++M+     PD  T++ 
Sbjct: 245 WSNVTALVEAMRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYNA 304

Query: 157 LI---HNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA----RQVVLDA 209
           L+         ++ +K  +++++ G   T   + +LI+AY   G  E+A     Q+V   
Sbjct: 305 LLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVHKG 364

Query: 210 EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN 269
              +K      + L+S     G+   AI V+ E++  GC        ALI+   + G+  
Sbjct: 365 ---IKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGKFA 421

Query: 270 RLIQLLEEV 278
            ++++ +++
Sbjct: 422 EMMKVFDDI 430



 Score = 46.2 bits (108), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 31/152 (20%), Positives = 65/152 (42%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I+P   +   +++       V  A +++  M +    PS  T NS+++    S  F    
Sbjct: 610 ISPDITTLNAMLSIYGRKQMVAKAHEILNFMHETRFTPSLTTYNSLMYMYSRSENFQKSE 669

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            I   +    +KP+  ++ ++I    +      A  +  ++K+  L+P    YN  +A Y
Sbjct: 670 EILREVLEKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEMKDSALVPDVVTYNTFIATY 729

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
                   A+ V++ M +   KPD  T++ ++
Sbjct: 730 AADSMFAEAIDVVRYMIKQGCKPDQNTYNSIV 761



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/143 (20%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           R +  +    + P+  T  +M+S+  + +    A+ +L+ + E    P+ + YN++M  Y
Sbjct: 600 RAFLELRRRGISPDITTLNAMLSIYGRKQMVAKAHEILNFMHETRFTPSLTTYNSLMYMY 659

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITK 183
            R ++ Q +  +L+E+ +  +KPD  +++ +I+  C N   ++  + + ++K +      
Sbjct: 660 SRSENFQKSEEILREVLEKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEMKDSALVPDV 719

Query: 184 YVFMALINAYTTCGEFEKARQVV 206
             +   I  Y     F +A  VV
Sbjct: 720 VTYNTFIATYAADSMFAEAIDVV 742


>gi|296087921|emb|CBI35204.3| unnamed protein product [Vitis vinifera]
          Length = 543

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/281 (21%), Positives = 118/281 (41%), Gaps = 13/281 (4%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
           I+P   +Y  LI   C+L +      ++ +MV  +++P   + N+++ A C+E       
Sbjct: 199 ISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAH 258

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +  MI      PN  ++ ++I+   KI+  D A  L  ++    L+P    Y+ ++ G
Sbjct: 259 DVVDKMIQRGGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHG 318

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGG------ 179
               + +Q A+ +  EM   +  P+  T+  L+        + +    LK+  G      
Sbjct: 319 LCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPD 378

Query: 180 -QITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAI 237
            Q+        I+     GE E AR +  + +   ++      S +++ L   G   +A 
Sbjct: 379 IQVNNIA----IDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEAS 434

Query: 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            ++ E+ E GC L       +        E +R IQLL+E+
Sbjct: 435 KLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEM 475



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/285 (19%), Positives = 123/285 (43%), Gaps = 5/285 (1%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQ-GELVPSTETINSILHACEESYEFNL 64
           +I P   S+  ++   C   KV  A DVV++M+Q G  +P+  + N++++   +    + 
Sbjct: 233 KIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLINGYCKIQRIDK 292

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
              ++  +C   L P++ T+ ++I     ++    A +L  ++   + +P    Y  ++ 
Sbjct: 293 AMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLD 352

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQI 181
              + + +  A+ +LK +E +N+ PD Q  +  I         E     +  L S G Q 
Sbjct: 353 YLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQP 412

Query: 182 TKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
             + +  +IN     G  ++A ++  +  E        + + +      +  TS AI + 
Sbjct: 413 DVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLL 472

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWM 285
           +E+   G + +   +   ++ L+ +G    L Q+L +      W+
Sbjct: 473 QEMVARGFSADASTMTLFVKMLSDDGLDQSLKQILRDFCKQKSWI 517



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/330 (21%), Positives = 135/330 (40%), Gaps = 35/330 (10%)

Query: 7   ITPSSASYKKLITYSCDL--LKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFN 63
           I P+  +   LI   C L   K+  AL + ++M+     P   T  ++++  C+      
Sbjct: 92  IPPNIYTLHILINSFCHLNRGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSA 151

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
            +R +  M+   N +PN   + ++I    K +    A++L  ++    + P    YN+++
Sbjct: 152 AIRLLGSMV-QKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLI 210

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY---EQLKSAGGQ 180
                  + +    +L EM  + + PD  +F+ ++     E  + + +   +++   GG 
Sbjct: 211 HALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGGC 270

Query: 181 ITKYV-FMALINAYTTCGEFEKAR----QVVLDAEIPVKSRSEVKSALVSALASHGRTSD 235
           +   + +  LIN Y      +KA     ++     IP    +   S L+  L    R  D
Sbjct: 271 MPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIP---DTVTYSTLIHGLCHVERLQD 327

Query: 236 AIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVH----DPDYW----- 284
           AI ++ E+    C+  P  V    L+++L     L   + LL+ +     DPD       
Sbjct: 328 AIALFHEM--VACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIA 385

Query: 285 MDGCCRLILHCVRFKQLSSATDLLKQLKDK 314
           +DG CR         +L +A DL   L  K
Sbjct: 386 IDGMCRA-------GELEAARDLFSNLSSK 408


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 116/244 (47%), Gaps = 14/244 (5%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           ALD+  +M Q  +VP+  T  S+L AC  S   +L ++I+  +    L  N     +++ 
Sbjct: 322 ALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMD 381

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K  + +++  L ++L + N +     +N I+ GY +  D + A+ +   M + +++P
Sbjct: 382 VYAKCGEIENSMKLFEELPDRNDVT----WNTIIVGYVQLGDGERAMNLFTHMLEHDMQP 437

Query: 150 DSQTFSYLIHNCSN----EEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205
              T+S ++   ++    E  +  +   +K+   + T  V  +LI+ Y  CG    AR +
Sbjct: 438 TEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDT-VVANSLIDMYAKCGRINDAR-L 495

Query: 206 VLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
             D    +  R EV  +A++   + HG + +A+ +++ ++   C       + ++   ++
Sbjct: 496 TFD---KMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSN 552

Query: 265 EGEL 268
            G L
Sbjct: 553 AGLL 556



 Score = 41.6 bits (96), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 41/200 (20%), Positives = 90/200 (45%), Gaps = 11/200 (5%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           +L +  QM      P+  TI+  L +C     FN+ + ++          +     +++ 
Sbjct: 221 SLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLE 280

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           L  K  +   A  L +++ + +L+P    ++ ++A Y +    + AL +   M Q +V P
Sbjct: 281 LYAKSGEIIDAQRLFEEMPKTDLIP----WSLMIARYAQSDRSKEALDLFLRMRQTSVVP 336

Query: 150 DSQTFSYLIHNCSNEEDIIKYYEQLKSA----GGQITKYVFMALINAYTTCGEFEKARQV 205
           ++ TF+ ++  C++    +   +Q+ S     G     +V  A+++ Y  CGE E + + 
Sbjct: 337 NNFTFASVLQACASSVS-LDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMK- 394

Query: 206 VLDAEIPVKSRSEVKSALVS 225
            L  E+P ++     + +V 
Sbjct: 395 -LFEELPDRNDVTWNTIIVG 413


>gi|357115900|ref|XP_003559723.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like, partial [Brachypodium distachyon]
          Length = 907

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 7/208 (3%)

Query: 22  CDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNS 81
           C L +V  A ++ E +     +P   T +S++H C  S   +L   +   +    L PN 
Sbjct: 657 CKLGRVADARNLFEDLKVKGFIPDNFTYSSLIHGCSASGSIDLAFGLRDEMLSARLTPNI 716

Query: 82  ETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKE 141
            T+ S+I    K  +   A SL + L+   + P A  YN ++ G+ +  +   A  + ++
Sbjct: 717 VTYNSLIYGLCKSCNVSRAVSLFNKLQSKGISPNAITYNTLIDGHCKDGNTTEAFKLKQK 776

Query: 142 MEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGE 198
           M +  ++P   T++ LIH    +   E+ IK  +Q+           +  LI  Y  CG 
Sbjct: 777 MIKEGIQPTVFTYTILIHGLCTQGYMEEAIKLLDQMIENNVDPNFITYWTLIQGYARCGN 836

Query: 199 FEKARQVVLDAEI----PVKSRSEVKSA 222
            +   ++  +  I    P      VK A
Sbjct: 837 MKAITKLYNEMHICGLLPANWTGHVKQA 864



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 80/173 (46%), Gaps = 3/173 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P + +Y  LI        + +A  + ++M+   L P+  T NS+++   +S   +    +
Sbjct: 679 PDNFTYSSLIHGCSASGSIDLAFGLRDEMLSARLTPNIVTYNSLIYGLCKSCNVSRAVSL 738

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +    + PN+ T+ ++I  + K  +   A+ L   + +  + PT   Y  ++ G   
Sbjct: 739 FNKLQSKGISPNAITYNTLIDGHCKDGNTTEAFKLKQKMIKEGIQPTVFTYTILIHGLCT 798

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAG 178
           +  ++ A+ +L +M + NV P+  T+  LI     C N + I K Y ++   G
Sbjct: 799 QGYMEEAIKLLDQMIENNVDPNFITYWTLIQGYARCGNMKAITKLYNEMHICG 851



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 86/454 (18%), Positives = 177/454 (38%), Gaps = 80/454 (17%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  + P+  S   L+       K   AL++ ++ +   L  +  TIN++++   ++    
Sbjct: 403 KRGVVPNEISCSTLLDGFFKAGKTEQALNLWKETLARGLARNVVTINTVINGLCKNRRMT 462

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               ++  +   +   +S T+R++I    K+ D   A  +  +++ +  +P+  M+N+ +
Sbjct: 463 EAEELFHRMKEWSCPCDSLTYRTLIDGYCKLGDLGRATQIRIEMENLGFVPSVEMFNSFI 522

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI----IKYYEQLKSAGG 179
            G F  K       +  EM    + P++ T+  LI     E ++    I Y+E +     
Sbjct: 523 TGLFIAKQSGKVNDIRVEMSAKGLSPNTVTYGALIAGWCKEGNLHDACILYFEMV----- 577

Query: 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
                                         E  +K    + S LVS     G+  +A +V
Sbjct: 578 ------------------------------EKGLKPNLFICSVLVSCFYREGKVDEANLV 607

Query: 240 YEEIKE-------AGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLI 292
            +++ +       +   L    V  +IE L   G  ++  +++  +            +I
Sbjct: 608 LQKLADTDMIQDCSASTLNIGKVAHIIESL--AGGNHQSAKIMWNI------------VI 653

Query: 293 LHCVRFKQLSSATDLLKQLKDK-FKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFI 351
           L   +  +++ A +L + LK K F  D     + +S +    + +   D+  GL      
Sbjct: 654 LGLCKLGRVADARNLFEDLKVKGFIPD----NFTYSSLIHGCSASGSIDLAFGL------ 703

Query: 352 KDEL---GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLA 408
           +DE+    L P+    + L+     + ++ RA  ++ + ++ G+  N ++Y  +      
Sbjct: 704 RDEMLSARLTPNIVTYNSLIYGLCKSCNVSRAVSLFNKLQSKGISPNAITYNTLIDGHCK 763

Query: 409 SGNRKSASKLLSKMPKDDPHVRFVIQACKQTYTI 442
            GN   A KL  KM K+       IQ    TYTI
Sbjct: 764 DGNTTEAFKLKQKMIKEG------IQPTVFTYTI 791



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 58/272 (21%), Positives = 118/272 (43%), Gaps = 11/272 (4%)

Query: 10  SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIY 69
           S+AS+  L+    D  ++  AL V ++M +     +  + N +L+   ++ +      ++
Sbjct: 93  SAASFDLLLRAHADAGQLKDALYVFDEMGKAGSRRTLRSCNRLLNQLVQAGDIGTAVAVF 152

Query: 70  P-MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
             M C   L P+  T   M     +      A   L +++EM L      Y+A+M GY R
Sbjct: 153 QQMRCAGTL-PDDFTVAIMAKAYCRDGRVAHAADFLKEMEEMGLDVNLVAYHAVMDGYCR 211

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLK-SAGGQITKY 184
               + A  +L  ++   + P+  T++ L+     E   E+  K  +++K +    I + 
Sbjct: 212 IGQTEVARKLLHSLQVKGLSPNVVTYTLLVKGYCKEGRMEEAEKVVKEIKENEKIVIDEV 271

Query: 185 VFMALINAYTTCGEFEKARQV---VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
            + ALIN Y   G  E A +V   ++DA + V     V + +++     GR  +   + +
Sbjct: 272 AYGALINGYCQRGRMEDANRVRDEMIDAGVQVNMF--VYNTMINGYCKLGRMGEVEKLLQ 329

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQ 273
             +  G NL+  +   L++    +G + +  +
Sbjct: 330 ANEYRGVNLDEYSYNTLVDGYCRKGFMTKAFE 361



 Score = 40.0 bits (92), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 44/205 (21%), Positives = 95/205 (46%), Gaps = 13/205 (6%)

Query: 223 LVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPD 282
           L+ A A  G+  DA+ V++E+ +AG     R+   L+  L   G++   + + +++    
Sbjct: 100 LLRAHADAGQLKDALYVFDEMGKAGSRRTLRSCNRLLNQLVQAGDIGTAVAVFQQMRCAG 159

Query: 283 YWMDGCCRLIL---HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPP 339
              D     I+   +C R  +++ A D LK++++   D  +   +   + +C+I  T   
Sbjct: 160 TLPDDFTVAIMAKAYC-RDGRVAHAADFLKEMEEMGLDVNLVAYHAVMDGYCRIGQT--- 215

Query: 340 DVQIGLDLLQFIKDELGLPPSRKCLDFLL-GACVNARDLKRAHLIWKEY-ENAGLPYNVL 397
             ++   LL  ++ + GL P+      L+ G C   R ++ A  + KE  EN  +  + +
Sbjct: 216 --EVARKLLHSLQVK-GLSPNVVTYTLLVKGYCKEGR-MEEAEKVVKEIKENEKIVIDEV 271

Query: 398 SYLWMYKAFLASGNRKSASKLLSKM 422
           +Y  +   +   G  + A+++  +M
Sbjct: 272 AYGALINGYCQRGRMEDANRVRDEM 296


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 116/280 (41%), Gaps = 14/280 (5%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  L+   C   +      ++++M +    P     N++L+   +S   +    +
Sbjct: 169 PNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALEL 228

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
             ++      P   T+ S++ L  + K  D A+ L+  + E    P    YN ++AG  R
Sbjct: 229 VQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCR 288

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---------EDIIKYYEQLKSAGG 179
              +  A  +LK+M  A   PD  T+S +I     +         E   +  E +K  G 
Sbjct: 289 DARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGC 348

Query: 180 QITKYVFMALINAYTTCGEFEKARQVV---LDAEIPVKSRSEVKSALVSALASHGRTSDA 236
                 +  +I       + ++A  ++   +D+E+ V   S     + S   SH   + A
Sbjct: 349 PPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEV-VPDLSSFSMVIGSLCKSHDLDA-A 406

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276
             ++  + E  C   P A  ALI+ L+  GE+++ +++ E
Sbjct: 407 YKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFE 446



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 89/186 (47%), Gaps = 4/186 (2%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P++ +Y  +I   C   K   AL ++ +M+  E+VP   + + ++ +  +S++ +   +I
Sbjct: 350 PNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKI 409

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           + M+     KPN   + ++I    K  + D A  + + + E +  P  + YN+++ G   
Sbjct: 410 FGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVE-SFRPGVATYNSVLDGLCG 468

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYV 185
              ++ A+ +++ M      PD  ++  LI      S  E+  + ++ +++ G  +   V
Sbjct: 469 VGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGV 528

Query: 186 FMALIN 191
           +  L+N
Sbjct: 529 YNVLVN 534



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 88/206 (42%), Gaps = 8/206 (3%)

Query: 79  PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMV 138
           PN  T+ S+I    K    D AY LLD++++  + P  +++N ++ G  +      AL  
Sbjct: 28  PNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGY 87

Query: 139 LKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYV-FMALINAYT 194
            K +      PD  TF+ L+         E+  + +E + ++   +   V +  +IN   
Sbjct: 88  FKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLC 147

Query: 195 TCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPR 253
             G+ ++A +++ L  E          S LV  L   GRT     + +E+   G   +P 
Sbjct: 148 KDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRG--FQPD 205

Query: 254 AVIALIEHLNSEGELNRLIQLLEEVH 279
            VI     LN   +  RL + LE V 
Sbjct: 206 -VIMYNTLLNGLCKSRRLDEALELVQ 230


>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
 gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/256 (20%), Positives = 112/256 (43%), Gaps = 7/256 (2%)

Query: 5   LEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL 64
           L   P    Y + +  +  L  + +A+++ E M + ++VP+    N ++    +      
Sbjct: 60  LGFRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRD 119

Query: 65  VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124
             +++  +   NL PN  TF ++I    K  + D A  L + +K+  + P+   +N++++
Sbjct: 120 AEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLS 179

Query: 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED----IIKYYEQLKSAGGQ 180
           G  + + ++ A  +L E++     PD  T+S +       +D     +  Y +    G +
Sbjct: 180 GLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVK 239

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIV 239
           I  Y    L+N     G+ EKA +V+    E  +     + + +V+     G    AI+ 
Sbjct: 240 IDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILT 299

Query: 240 YEEIKEAGCNLEPRAV 255
            E+++  G  L P  +
Sbjct: 300 IEQMESRG--LRPNCI 313



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/264 (18%), Positives = 113/264 (42%), Gaps = 4/264 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P    Y  ++   C +  +  A+  +EQM    L P+    NS++    E    +   
Sbjct: 273 LVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAE 332

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
                +    + P+ ET+  +I    ++  F   + +L++++E    P    Y +++   
Sbjct: 333 EWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCL 392

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLI-HNCSNEE--DIIKYYEQLKSAGGQITK 183
            +   +  A MVL++M    V P++  ++ LI  +C+  +  + +++++++   G   T 
Sbjct: 393 CKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATI 452

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEE 242
             + +LI      G+ ++A ++             +  ++L+S  ++ G +   + +YE 
Sbjct: 453 VTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYET 512

Query: 243 IKEAGCNLEPRAVIALIEHLNSEG 266
           +K+ G          LI   + EG
Sbjct: 513 MKKLGLKPTINTFHPLISGCSKEG 536



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 9/160 (5%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           +K  I  +  +Y  LI   C + K+  A ++   +      P   T NS++     +   
Sbjct: 444 SKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNS 503

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISL----NVKIKDFDSAYSLLDDLKEMNLMPTASM 118
                +Y  +    LKP   TF  +IS      +K+K+     +L +++ +MNL P   +
Sbjct: 504 QKCLELYETMKKLGLKPTINTFHPLISGCSKEGIKLKE-----TLFNEMLQMNLSPDRVV 558

Query: 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
           YNA++  Y     VQ A  + KEM    V+PD++T++ LI
Sbjct: 559 YNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLI 598



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 68/316 (21%), Positives = 133/316 (42%), Gaps = 11/316 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  ++  +I   C++  +  A + V++MV   + PS ET N ++        F+   
Sbjct: 308 LRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCF 367

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +I   +  +  KPN  ++ S+I+   K      A  +L D+    ++P A++YN ++ G 
Sbjct: 368 QILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGS 427

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQ---LKSAGGQITK 183
                ++ AL    EM +  +     T++ LI        + +  E    + S G     
Sbjct: 428 CTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDV 487

Query: 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             + +LI+ Y+  G  +K  ++     ++ +K        L+S  +  G      +  E 
Sbjct: 488 ITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISGCSKEGIKLKETLFNEM 547

Query: 243 IKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRF 298
           ++    NL P  V+  A+I      G + +   L +E+ D     D      LIL  ++ 
Sbjct: 548 LQ---MNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKE 604

Query: 299 KQLSSATDLLKQLKDK 314
            +LS   DL+  +K K
Sbjct: 605 GKLSETKDLVDDMKAK 620



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 82/406 (20%), Positives = 165/406 (40%), Gaps = 39/406 (9%)

Query: 37  MVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKD 96
           M Q   +PS   +  I+ +  ES +F+ V  ++  +     +P+   +   +   VK+ D
Sbjct: 22  MRQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGLGFRPDKLVYGRAMLAAVKLGD 81

Query: 97  FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSY 156
              A  L + +K   ++P   +YN ++ G  ++K ++ A  +  EM   N+ P+  TF+ 
Sbjct: 82  LKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNT 141

Query: 157 LIHN-C-SNEEDI-IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPV 213
           LI   C + E D+ I   E++K    + +   F +L++        E+AR ++ +    +
Sbjct: 142 LIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNE----I 197

Query: 214 KSRSEVKSALVSALASHG--RTSD----AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
           K    V      ++   G  ++ D    A+ +Y E    G  ++      L+  L  EG+
Sbjct: 198 KCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTCSILLNGLCKEGK 257

Query: 268 LNR----LIQLLEEVHDP-----DYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDD 318
           + +    L  L+E    P     +  ++G C++         +  A   ++Q++ +    
Sbjct: 258 VEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQI-------GDMDRAILTIEQMESRGLRP 310

Query: 319 EMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDEL--GLPPSRKCLDFLLGACVNARD 376
                    + FC++   D  +        +++K  +  G+ PS +  + L+        
Sbjct: 311 NCIAFNSVIDKFCEMQMIDKAE--------EWVKKMVGKGIAPSVETYNILIDGYGRLCV 362

Query: 377 LKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
             R   I +E E  G   NV+SY  +       G    A  +L  M
Sbjct: 363 FSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDM 408



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 71/147 (48%), Gaps = 1/147 (0%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           KL + P+  ++  LI+  C    + +   +  +M+Q  L P     N+++H  +E+    
Sbjct: 515 KLGLKPTINTFHPLIS-GCSKEGIKLKETLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQ 573

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               +   +    ++P+++T+ S+I  ++K         L+DD+K   L+P A  Y+ ++
Sbjct: 574 KAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPEADTYSLLI 633

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPD 150
            G+   KD  GA +  +EM +    P+
Sbjct: 634 QGHCDLKDFNGAYVWYREMLENGFLPN 660



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/152 (20%), Positives = 69/152 (45%), Gaps = 1/152 (0%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  LI+   +       L++ E M +  L P+  T + ++  C +     L   +
Sbjct: 485 PDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISGCSKE-GIKLKETL 543

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  +   NL P+   + +MI    +      A+SL  ++ +M + P    YN+++ G+ +
Sbjct: 544 FNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLK 603

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160
           +  +     ++ +M+   + P++ T+S LI  
Sbjct: 604 EGKLSETKDLVDDMKAKGLIPEADTYSLLIQG 635



 Score = 41.6 bits (96), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 28/139 (20%), Positives = 62/139 (44%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           ++ ++P    Y  +I    +   V  A  + ++MV   + P  +T NS++    +  + +
Sbjct: 549 QMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLS 608

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
             + +   +    L P ++T+  +I  +  +KDF+ AY    ++ E   +P   + N + 
Sbjct: 609 ETKDLVDDMKAKGLIPEADTYSLLIQGHCDLKDFNGAYVWYREMLENGFLPNVCICNELS 668

Query: 124 AGYFRKKDVQGALMVLKEM 142
            G  +   +Q A  +  EM
Sbjct: 669 TGLRKDGRLQEAQSICSEM 687


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 112/249 (44%), Gaps = 18/249 (7%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           S+  +IT    + +   A+    +M + ++ P+  T  +++  C          +++ +I
Sbjct: 285 SWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALI 344

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
            H  L  +     S++++  K     S+  +  ++   +++     ++ I+AGY +   V
Sbjct: 345 LHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVS----WSTIIAGYSQGGHV 400

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK----SAGGQITKYVFMA 188
             A  +L  M     KP     + ++  C N   I+++ +QL     S G + T  V  A
Sbjct: 401 SEAFELLSWMRMEGPKPTEFALASVLSACGNMA-ILEHGKQLHAYVLSIGLEHTAMVLSA 459

Query: 189 LINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVYEEIKEA 246
           LIN Y  CG  E+A ++   AE       ++ S  A+++  A HG + + I ++E+I   
Sbjct: 460 LINMYCKCGSIEEASRIFDAAE-----NDDIVSWTAMINGYAEHGYSREVIDLFEKIPRV 514

Query: 247 GCNLEPRAV 255
           G  L P +V
Sbjct: 515 G--LRPDSV 521


>gi|357129559|ref|XP_003566429.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g53330-like [Brachypodium distachyon]
          Length = 461

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 124/278 (44%), Gaps = 8/278 (2%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQ-GELVPSTETINSILHACEESYEFNLVRR 67
           P+  + + L T    LL  H  LD +  + +  ++ P   T N ++ A   S   +  R 
Sbjct: 111 PAPRTSRALNTLLHALLVCHTPLDELFSVCRDADVSPDACTYNILMRAAAASGSVDHARL 170

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDL-KEMNLMPTASMYNAIMAGY 126
           ++  +    + P   TF ++++        D A+ L + + ++ N+ P A +Y ++M G 
Sbjct: 171 LFDEMVQRRIAPTVVTFGTLVAAFCSSGRLDEAFDLKEAMARQYNVRPNAHVYASLMKGL 230

Query: 127 FRKKDVQGALMVLKEME-QANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQIT 182
            +  D   A+ + +EM   A +  DS  ++ L+        + +++   E++K  G  + 
Sbjct: 231 CQSGDADNAVRLKEEMAGNAELGLDSAIYATLVRALFRVGRKGEVVGLLEEMKGRGIAVD 290

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS--ALVSALASHGRTSDAIIVY 240
           + V  A+I  +        A  VVLD       +++  S   LV+ L   GR  DA  + 
Sbjct: 291 RVVHNAMIAGFCEDEMDLDAAFVVLDDMQKSGCKADTVSYNTLVAGLCKLGRWRDANELV 350

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           E++   GC+ +      L + + + GE +   Q+L+E+
Sbjct: 351 EDMPRRGCSPDVVTYRMLFDGMCAVGEFHEANQVLDEM 388



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 45/242 (18%), Positives = 98/242 (40%), Gaps = 41/242 (16%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +++P + +Y  L+  +     V  A  + ++MVQ  + P+  T  +++ A   S   +  
Sbjct: 144 DVSPDACTYNILMRAAAASGSVDHARLLFDEMVQRRIAPTVVTFGTLVAAFCSSGRLDEA 203

Query: 66  RRIY-PMICHHNLKPNSETFRSMISLNVKIKDFDSA------------------------ 100
             +   M   +N++PN+  + S++    +  D D+A                        
Sbjct: 204 FDLKEAMARQYNVRPNAHVYASLMKGLCQSGDADNAVRLKEEMAGNAELGLDSAIYATLV 263

Query: 101 ------------YSLLDDLKEMNLMPTASMYNAIMAGYFRKK-DVQGALMVLKEMEQANV 147
                         LL+++K   +     ++NA++AG+   + D+  A +VL +M+++  
Sbjct: 264 RALFRVGRKGEVVGLLEEMKGRGIAVDRVVHNAMIAGFCEDEMDLDAAFVVLDDMQKSGC 323

Query: 148 KPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204
           K D+ +++ L+          D  +  E +   G       +  L +     GEF +A Q
Sbjct: 324 KADTVSYNTLVAGLCKLGRWRDANELVEDMPRRGCSPDVVTYRMLFDGMCAVGEFHEANQ 383

Query: 205 VV 206
           V+
Sbjct: 384 VL 385


>gi|357517409|ref|XP_003628993.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523015|gb|AET03469.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 819

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 96/433 (22%), Positives = 182/433 (42%), Gaps = 33/433 (7%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y   I   C   K+  A+ +  +M +G ++P+  T N+++    +S            +
Sbjct: 243 TYATAINAYCKGGKIDEAVGLFLKMGEGGVLPNVVTYNNLIDGLCKSGRLEEALMFKGRM 302

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
             + + P+  T+  +++  VK + FD A S+L ++      P   ++NA++ GY RK ++
Sbjct: 303 VENKVNPSLVTYGILVNGLVKFEKFDEANSVLVEMYSKGFSPNEFVFNALIDGYSRKGNM 362

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE-----EDIIKY-YEQLKSAGGQITKYV 185
             AL V  +M    +KP++ T + L+   C        E +++Y    + S       YV
Sbjct: 363 DDALRVRDDMTLKGLKPNAVTHNTLLQGFCRTNQMEQAEQVLEYLLSNVLSVNEDACSYV 422

Query: 186 FMALINAYTTCGEFEKARQVVLDAEI-PVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
              L  +     +F+ A ++V    +  +K    + + LV  L   G+  +AI ++  + 
Sbjct: 423 LHLLCKS----SKFDSALKIVKALLLRNIKVNDSLLTLLVCGLCKCGKHLEAIDLWFRLA 478

Query: 245 E-AGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC--RLILHCVRFKQL 301
           +  G         AL+  L   G +  +  + +E+ +    +DG     LI  C +  ++
Sbjct: 479 DKKGLAANTTTSNALLYGLCERGNMEEVFPVCKEMVERGLVLDGISYNTLIFGCCKSGKI 538

Query: 302 SSATDLL-KQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS 360
             A  L  K +K  FK D     Y ++ +   +A     D  +G  +L   KD  G+ P+
Sbjct: 539 EEAFKLKEKMMKQGFKPD----TYTYNFLMKGLADKGKMD-DVG-RVLHEAKDH-GVVPN 591

Query: 361 RKCLDFLLGACVNARDLKRA-----HLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSA 415
                 +L    NA  +  A      L++ + E + + YN+L       A   +GN   A
Sbjct: 592 IYTYALMLEGYCNADRIDNAVSLFNKLVYNKVELSYVVYNIL-----IAAHSKAGNFTEA 646

Query: 416 SKLLSKMPKDDPH 428
            KL   M   + H
Sbjct: 647 FKLRDAMRSSNIH 659



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 4/265 (1%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           SY  LI   C   K+  A  + E+M++    P T T N ++    +  + + V R+    
Sbjct: 524 SYNTLIFGCCKSGKIEEAFKLKEKMMKQGFKPDTYTYNFLMKGLADKGKMDDVGRVLHEA 583

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
             H + PN  T+  M+         D+A SL + L    +  +  +YN ++A + +  + 
Sbjct: 584 KDHGVVPNIYTYALMLEGYCNADRIDNAVSLFNKLVYNKVELSYVVYNILIAAHSKAGNF 643

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE--EDIIKYYEQLKSAGGQITKYVFMAL 189
             A  +   M  +N+ P   T+S +IH  C N+  E+    +E++++ G     + + AL
Sbjct: 644 TEAFKLRDAMRSSNIHPTIFTYSSIIHGMCCNDLVEEAKGIFEEMRNEGLMPNVFCYTAL 703

Query: 190 INAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGC 248
           I  Y   G+ ++   ++ +        +++  + ++      G T +A  +  E+   G 
Sbjct: 704 IGGYCKLGQMDQIESILQEMTSNCIQPNKITYTIMIDGYCKMGNTKEATKLLNEMIANGI 763

Query: 249 NLEPRAVIALIEHLNSEGELNRLIQ 273
           + +      L +    E EL   +Q
Sbjct: 764 SPDTVTYTVLQKGYCKENELEETLQ 788



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 81/187 (43%), Gaps = 9/187 (4%)

Query: 25  LKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETF 84
           L  H A D         + PS ++ N ++ +  +S E +   R++  +C   +  +  T+
Sbjct: 185 LGFHWAFDTFMLFTSKGVFPSLKSCNFLMSSLVKSNELHKSFRVFDAMCRGGVLIDVYTY 244

Query: 85  RSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQ 144
            + I+   K    D A  L   + E  ++P    YN ++ G  +   ++ ALM    M +
Sbjct: 245 ATAINAYCKGGKIDEAVGLFLKMGEGGVLPNVVTYNNLIDGLCKSGRLEEALMFKGRMVE 304

Query: 145 ANVKPDSQTFSYLIHNCSNEEDIIKYYE------QLKSAGGQITKYVFMALINAYTTCGE 198
             V P   T+  L++     E   K+ E      ++ S G    ++VF ALI+ Y+  G 
Sbjct: 305 NKVNPSLVTYGILVNGLVKFE---KFDEANSVLVEMYSKGFSPNEFVFNALIDGYSRKGN 361

Query: 199 FEKARQV 205
            + A +V
Sbjct: 362 MDDALRV 368



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/324 (20%), Positives = 131/324 (40%), Gaps = 19/324 (5%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  LI   C   ++  AL    +MV+ ++ PS  T   +++   +  +F+   
Sbjct: 272 VLPNVVTYNNLIDGLCKSGRLEEALMFKGRMVENKVNPSLVTYGILVNGLVKFEKFDEAN 331

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +      PN   F ++I    +  + D A  + DD+    L P A  +N ++ G+
Sbjct: 332 SVLVEMYSKGFSPNEFVFNALIDGYSRKGNMDDALRVRDDMTLKGLKPNAVTHNTLLQGF 391

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITK 183
            R   ++ A  VL+ +    +  +    SY++H     S  +  +K  + L     ++  
Sbjct: 392 CRTNQMEQAEQVLEYLLSNVLSVNEDACSYVLHLLCKSSKFDSALKIVKALLLRNIKVND 451

Query: 184 YVFMALINAYTTCGEFEKARQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
            +   L+     CG+  +A  +   L  +  + + +   +AL+  L   G   +   V +
Sbjct: 452 SLLTLLVCGLCKCGKHLEAIDLWFRLADKKGLAANTTTSNALLYGLCERGNMEEVFPVCK 511

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQL 301
           E+ E G  L+  +   LI      G++    +L E++    +  D       +   F   
Sbjct: 512 EMVERGLVLDGISYNTLIFGCCKSGKIEEAFKLKEKMMKQGFKPD------TYTYNF--- 562

Query: 302 SSATDLLKQLKDKFKDDEMAMEYH 325
                L+K L DK K D++    H
Sbjct: 563 -----LMKGLADKGKMDDVGRVLH 581



 Score = 45.4 bits (106), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 82/425 (19%), Positives = 168/425 (39%), Gaps = 52/425 (12%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P++ ++  L+   C   ++  A  V+E ++   L  + +  + +LH   +S +F+   
Sbjct: 377 LKPNAVTHNTLLQGFCRTNQMEQAEQVLEYLLSNVLSVNEDACSYVLHLLCKSSKFDSAL 436

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL---LDDLKEMNLMPTASMYNAIM 123
           +I   +   N+K N      ++    K      A  L   L D K +    T S  NA++
Sbjct: 437 KIVKALLLRNIKVNDSLLTLLVCGLCKCGKHLEAIDLWFRLADKKGLAANTTTS--NALL 494

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQ 180
            G   + +++    V KEM +  +  D  +++ LI  C      E+  K  E++   G +
Sbjct: 495 YGLCERGNMEEVFPVCKEMVERGLVLDGISYNTLIFGCCKSGKIEEAFKLKEKMMKQGFK 554

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240
              Y +  L+      G+ +   +V+ +A+                   HG   + I  Y
Sbjct: 555 PDTYTYNFLMKGLADKGKMDDVGRVLHEAK------------------DHGVVPN-IYTY 595

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQ 300
             + E  CN +           N+    N+L+    E+             +++ +    
Sbjct: 596 ALMLEGYCNADRID--------NAVSLFNKLVYNKVEL-----------SYVVYNILIAA 636

Query: 301 LSSATDLLK--QLKDKFKDDEM-AMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGL 357
            S A +  +  +L+D  +   +    + +S I   +   D  +   G+   + +++E GL
Sbjct: 637 HSKAGNFTEAFKLRDAMRSSNIHPTIFTYSSIIHGMCCNDLVEEAKGI--FEEMRNE-GL 693

Query: 358 PPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASK 417
            P+  C   L+G       + +   I +E  +  +  N ++Y  M   +   GN K A+K
Sbjct: 694 MPNVFCYTALIGGYCKLGQMDQIESILQEMTSNCIQPNKITYTIMIDGYCKMGNTKEATK 753

Query: 418 LLSKM 422
           LL++M
Sbjct: 754 LLNEM 758


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 119/273 (43%), Gaps = 8/273 (2%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P +A+Y  LI   C L +V  A ++ E+M +   +    T  +++ A     + +    +
Sbjct: 157 PDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACEL 216

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           Y  +     +P  E   S+I    K    D A  +   +    +  +   YN++M GY +
Sbjct: 217 YREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCK 276

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYV 185
              V   L +L +M + +  PD QT++ L+   S     +D ++ ++ L S G +     
Sbjct: 277 LGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAAT 336

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245
           +  +I         E+A+    D  + V S + V    +  LA   R  +A  ++E++K 
Sbjct: 337 YTTIIQGLYDAQRMEEAK-AFFDEALDVISYTTV----IKGLADSKRIDEACELFEKLKT 391

Query: 246 AGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
           AGC+    A  A+I+ L   G +   ++  E++
Sbjct: 392 AGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDM 424



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/414 (18%), Positives = 173/414 (41%), Gaps = 21/414 (5%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
            P+  +Y  +I   C    +  A  V EQMVQ   VP T T  +++    ++ + +  R+
Sbjct: 430 VPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARK 489

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +  ++     +P + T+ S++    K+   + A  ++  ++E    P   ++ ++++ Y 
Sbjct: 490 LLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYL 549

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITKY 184
            K   + A  VL EM      PD   ++ LI    +     +    ++ +   G      
Sbjct: 550 SKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDAL 609

Query: 185 VFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
            +  +I  ++  G  E A +++ L A+  V       ++L+       R   A  VY+ +
Sbjct: 610 TYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRM 669

Query: 244 KEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQL 301
             +G  ++P AV    L+  L  +G+ +R   L +E+ + D        L+ + +    L
Sbjct: 670 VASG--IKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPP---TLVSYTILIDGL 724

Query: 302 SSA---TDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTD--PPDVQIGLDLLQFIKDELG 356
             A   ++   Q ++      +   + ++ +   +A     P   ++  D+++     LG
Sbjct: 725 GKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVK-----LG 779

Query: 357 LPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASG 410
           + P  +    L+   +++  +  A  +++E    G   N ++Y  + + F A+G
Sbjct: 780 VNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAG 833



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/312 (20%), Positives = 129/312 (41%), Gaps = 45/312 (14%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++  S  +Y  L+   C L +V   L ++ QMV+ +  P  +T N ++     +   +  
Sbjct: 259 KVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDA 318

Query: 66  RRIYPMICHHNLKPNSETFRSMI------------------SLNV-----------KIKD 96
             ++ ++  +  KPN+ T+ ++I                  +L+V             K 
Sbjct: 319 LELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDEALDVISYTTVIKGLADSKR 378

Query: 97  FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSY 156
            D A  L + LK     P    Y A++ G  +   ++  L   ++M  ++  P   T++ 
Sbjct: 379 IDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTV 438

Query: 157 LIHNCSNEE---DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPV 213
           +I      +   D  K +EQ+   G       +  LI+ ++   + ++AR+ +LD  +  
Sbjct: 439 VIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARK-LLDVML-- 495

Query: 214 KSRSEVKSALVSALASHG-----RTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEG 266
            ++    +A+      HG       ++A  V  +++E GC  EP   I  +L+ +  S+G
Sbjct: 496 -TKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGC--EPGLFIFTSLLSYYLSKG 552

Query: 267 ELNRLIQLLEEV 278
                 Q+L E+
Sbjct: 553 RAEEAYQVLTEM 564



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 88/199 (44%), Gaps = 13/199 (6%)

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
           K +  D A  L  ++  M   PT   YN +++G      +  A      M     +PD  
Sbjct: 32  KARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVI 91

Query: 153 TFSYLIHN-CSNEEDIIKYY---EQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208
            F+ LIH  C   +  + +    + LK     +  +++ ++I+ Y   G+ +   +++ +
Sbjct: 92  AFTTLIHGFCKAGQPQVGHMLLNQALKRFRPDV--FLYTSVIHGYCKAGDLDTGFKILEE 149

Query: 209 ----AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
                 IP  +   V   L+  L   GR  +A  ++E ++++GC  +    + LIE L++
Sbjct: 150 MLAAGCIPDAAAYFV---LIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSN 206

Query: 265 EGELNRLIQLLEEVHDPDY 283
            G+L+   +L  E+ +  Y
Sbjct: 207 HGKLDEACELYREMIERGY 225



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 79/433 (18%), Positives = 171/433 (39%), Gaps = 52/433 (12%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           ALD +++M    L+P     N +L+   ++ + +    ++  +     +P   ++ ++IS
Sbjct: 4   ALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVIS 63

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
               I   D AY   + + +    P    +  ++ G+ +    Q   M+L +  +   +P
Sbjct: 64  GLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALK-RFRP 122

Query: 150 DSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
           D   ++ +IH      D+    K  E++ +AG       +  LI+     G  ++A ++ 
Sbjct: 123 DVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELF 182

Query: 207 LDAEIPVKSRS----EVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIE 260
              E   KS           L+ AL++HG+  +A  +Y E+ E G   EP   +  +LI 
Sbjct: 183 ---ERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERG--YEPYLEVQDSLIF 237

Query: 261 HLNSEGELNRLIQLLEEVHDP---------DYWMDGCCRL------------ILHCVRFK 299
            L   G+++   ++ + V            +  MDG C+L            ++ C  F 
Sbjct: 238 ALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFP 297

Query: 300 QLSSATDLLKQLKDKFK-DDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLP 358
            + +   L+       + DD + +    S   C+      P+      ++Q + D   + 
Sbjct: 298 DIQTYNILVAGFSRANRLDDALELFKLLSSYGCK------PNAATYTTIIQGLYDAQRME 351

Query: 359 PSRKCLD---------FLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLAS 409
            ++   D          ++    +++ +  A  ++++ + AG   NV++Y  +    L +
Sbjct: 352 EAKAFFDEALDVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKA 411

Query: 410 GNRKSASKLLSKM 422
           G  +   K    M
Sbjct: 412 GRIEDGLKNFEDM 424



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/194 (20%), Positives = 87/194 (44%), Gaps = 4/194 (2%)

Query: 79  PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMV 138
           PN   + ++I   +K    +      +D+   + +PT + Y  ++ G  + + +  A  V
Sbjct: 396 PNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKV 455

Query: 139 LKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTT 195
            ++M Q    PD+ T++ LI      S  ++  K  + + + G + T   + ++++ +  
Sbjct: 456 FEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCK 515

Query: 196 CGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRA 254
                +A++V+    E   +    + ++L+S   S GR  +A  V  E+   GC  +   
Sbjct: 516 LDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVIL 575

Query: 255 VIALIEHLNSEGEL 268
             +LI+ L S G +
Sbjct: 576 YTSLIDLLFSTGRV 589



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/162 (20%), Positives = 70/162 (43%), Gaps = 7/162 (4%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHAC---- 56
           + AK  + P   +Y  L+     L +V  A  V ++MV   + P+  T N ++H      
Sbjct: 633 LMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDG 692

Query: 57  EESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTA 116
           +    F+L +    M+    + P   ++  +I    K      A+S   ++ +  ++P  
Sbjct: 693 KTDRAFSLFKE---MLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPEC 749

Query: 117 SMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158
             Y +++    +   +  A  ++++M +  V PD Q +S LI
Sbjct: 750 HTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALI 791


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 116/280 (41%), Gaps = 14/280 (5%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  +Y  L+   C   +      ++++M +    P     N++L+   +S   +    +
Sbjct: 169 PNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALEL 228

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
             ++      P   T+ S++ L  + K  D A+ L+  + E    P    YN ++AG  R
Sbjct: 229 VQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCR 288

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---------EDIIKYYEQLKSAGG 179
              +  A  +LK+M  A   PD  T+S +I     +         E   +  E +K  G 
Sbjct: 289 DARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGC 348

Query: 180 QITKYVFMALINAYTTCGEFEKARQVV---LDAEIPVKSRSEVKSALVSALASHGRTSDA 236
                 +  +I       + ++A  ++   +D+E+ V   S     + S   SH   + A
Sbjct: 349 PPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEV-VPDLSSFSMVIGSLCKSHDLDA-A 406

Query: 237 IIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276
             ++  + E  C   P A  ALI+ L+  GE+++ +++ E
Sbjct: 407 YKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFE 446



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 89/186 (47%), Gaps = 4/186 (2%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P++ +Y  +I   C   K   AL ++ +M+  E+VP   + + ++ +  +S++ +   +I
Sbjct: 350 PNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKI 409

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           + M+     KPN   + ++I    K  + D A  + + + E +  P  + YN+++ G   
Sbjct: 410 FGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVE-SFRPGVATYNSVLDGLCG 468

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYV 185
              ++ A+ +++ M      PD  ++  LI      S  E+  + ++ +++ G  +   V
Sbjct: 469 VGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGV 528

Query: 186 FMALIN 191
           +  L+N
Sbjct: 529 YNVLVN 534



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 88/206 (42%), Gaps = 8/206 (3%)

Query: 79  PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMV 138
           PN  T+ S+I    K    D AY LLD++++  + P  +++N ++ G  +      AL  
Sbjct: 28  PNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGY 87

Query: 139 LKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQITKYV-FMALINAYT 194
            K +      PD  TF+ L+         E+  + +E + ++   +   V +  +IN   
Sbjct: 88  FKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLC 147

Query: 195 TCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPR 253
             G+ ++A +++ L  E          S LV  L   GRT     + +E+   G   +P 
Sbjct: 148 KDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRG--FQPD 205

Query: 254 AVIALIEHLNSEGELNRLIQLLEEVH 279
            VI     LN   +  RL + LE V 
Sbjct: 206 -VIMYNTLLNGLCKSRRLDEALELVQ 230


>gi|242038895|ref|XP_002466842.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
 gi|241920696|gb|EER93840.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
          Length = 1090

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/275 (21%), Positives = 126/275 (45%), Gaps = 5/275 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  L++  C   K+  AL +++ M++  +VP T     +L+      +      +
Sbjct: 607 PDIHTYTILLSGFCRKGKILPALVMLQMMLEKGVVPDTVAYTCLLNGLINEGQVKAASYV 666

Query: 69  YP-MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +  +IC   L  +   + S+++  +K  + ++   ++ D+ +  + P ++ YN +M GY 
Sbjct: 667 FQEIICKEGLYADCIAYNSLMNGYLKGGNVNTIKRMMSDMYQNEVYPNSASYNILMHGYV 726

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITKY 184
           ++     +L + K M +  ++PD+ T+  LI     C   +  +K+ E++   G    K 
Sbjct: 727 KRGQFSKSLYLYKYMVRKGIRPDNVTYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDKL 786

Query: 185 VFMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
           VF  LI +++   +   A ++    + + +   S+  SA+++ L        +  V  E+
Sbjct: 787 VFDILITSFSEKSKMHNALRLFNCMKCLHLSPSSKTFSAMINGLIRKNYLDQSHEVLHEM 846

Query: 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278
            + G        IAL+      GE++R  +L EE+
Sbjct: 847 LQVGLQPNHTHYIALVNAKCRVGEIDRAFRLKEEM 881



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 130/281 (46%), Gaps = 10/281 (3%)

Query: 7    ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLV 65
            I P + +Y+ LI    +   + +A+  +E+MV   + P     + ++ +  E+S   N +
Sbjct: 746  IRPDNVTYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDKLVFDILITSFSEKSKMHNAL 805

Query: 66   RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            R    M C H L P+S+TF +MI+  ++    D ++ +L ++ ++ L P  + Y A++  
Sbjct: 806  RLFNCMKCLH-LSPSSKTFSAMINGLIRKNYLDQSHEVLHEMLQVGLQPNHTHYIALVNA 864

Query: 126  YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQIT 182
              R  ++  A  + +EM+   + P     S +I     C   E+ +  +  +  +G   T
Sbjct: 865  KCRVGEIDRAFRLKEEMKAIGIVPAEVAESSIIRGLCRCGKLEEAVIVFSNMMRSGMVPT 924

Query: 183  KYVFMALINAYTTCGEFEKARQVVLDAEIPV-KSRSEVKS--ALVSALASHGRTSDAIIV 239
               F  L+  ++ C E + A  + L   + + + + +V S   L++ L      SDA+ +
Sbjct: 925  VATFTTLM--HSLCKESKIADALHLKRLMELCRLKVDVVSYNVLITGLCKDKHISDALDL 982

Query: 240  YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
            Y E+K  G        I L   + S G +    +LLE++ +
Sbjct: 983  YGEMKSKGLWPNVTTYITLTGAMYSTGRMQNGEELLEDIEE 1023



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 90/468 (19%), Positives = 178/468 (38%), Gaps = 54/468 (11%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           ++TP   +Y  LI       K++ A  V   M++  LVPS  T  +++     +   +  
Sbjct: 254 DLTPDECTYNTLINGFFGEGKINHARCVFNHMLRQTLVPSVATYTTMIDGYCRNRRIDKA 313

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
             +   +    + P+  T+ ++++   K+     A  L+ DLK   +    +M   ++ G
Sbjct: 314 LSVLSEMEITGVMPSELTYSALLNGYCKVSMLGPALDLMVDLKSRGITINKTMCTILIDG 373

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI------------------ 167
           + +  ++  A  +LK M +  + PD  T+S LI+       +                  
Sbjct: 374 FCQVGEISKAKQILKSMLEDGIDPDVVTYSALINGMCRMAKMHETKEILSRMQKSGILPN 433

Query: 168 --------------------IKYYEQLKSAGGQITKYVFMALINAYTTCG---EFEKARQ 204
                               +K++  +   G      +  AL+ A+   G   E E  RQ
Sbjct: 434 DVLYTTLICYYCKAGYVKVALKHFVDIYRRGLVANPVIHNALLRAFYREGMITEAEHFRQ 493

Query: 205 VVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264
            +    I   S S   + ++ +    G+  +A  VY+++   G +        L+  L  
Sbjct: 494 YMSRMNISFNSVSF--NCIIDSYCHRGKIVEAFSVYDDMVRYGHSPNVCTYQNLLRGLCQ 551

Query: 265 EGELNRLIQLLEEVHDPDYWMD--GCCRLILHCVRFKQLSSATDLL-KQLKDKFKDDEMA 321
            G L +  Q +  + D    +D      L+L   ++  L  A D+  K +K+    D   
Sbjct: 552 GGHLVQAKQFMFCLLDIPSAVDEKTFNALLLGICKYGTLDEALDICEKMVKNNCLPDIHT 611

Query: 322 MEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAH 381
                S  FC+     P  V + + L      E G+ P       LL   +N   +K A 
Sbjct: 612 YTILLSG-FCRKGKILPALVMLQMML------EKGVVPDTVAYTCLLNGLINEGQVKAAS 664

Query: 382 LIWKEYE-NAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPH 428
            +++E     GL  + ++Y  +   +L  GN  +  +++S M +++ +
Sbjct: 665 YVFQEIICKEGLYADCIAYNSLMNGYLKGGNVNTIKRMMSDMYQNEVY 712



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/197 (20%), Positives = 91/197 (46%), Gaps = 3/197 (1%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  +I   C + +   A  ++++M + +L P   T N++++      + N  R ++  +
Sbjct: 226 TYNIMIDKLCRIKRSARAFLLLKRMRKDDLTPDECTYNTLINGFFGEGKINHARCVFNHM 285

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
               L P+  T+ +MI    + +  D A S+L +++   +MP+   Y+A++ GY +   +
Sbjct: 286 LRQTLVPSVATYTTMIDGYCRNRRIDKALSVLSEMEITGVMPSELTYSALLNGYCKVSML 345

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA---GGQITKYVFMAL 189
             AL ++ +++   +  +    + LI       +I K  + LKS    G       + AL
Sbjct: 346 GPALDLMVDLKSRGITINKTMCTILIDGFCQVGEISKAKQILKSMLEDGIDPDVVTYSAL 405

Query: 190 INAYTTCGEFEKARQVV 206
           IN      +  + ++++
Sbjct: 406 INGMCRMAKMHETKEIL 422



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 88/215 (40%), Gaps = 39/215 (18%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A D++++M +   + ++ T N+ILH   +   F     +   +   +++ +  T+  MI 
Sbjct: 174 AEDMLQKM-KSCCLSNSATYNTILHWYVKKGRFKAALCVLEDMERDSIQADIYTYNIMID 232

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF---------------------- 127
              +IK    A+ LL  +++ +L P    YN ++ G+F                      
Sbjct: 233 KLCRIKRSARAFLLLKRMRKDDLTPDECTYNTLINGFFGEGKINHARCVFNHMLRQTLVP 292

Query: 128 -------------RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYY 171
                        R + +  AL VL EME   V P   T+S L++     S     +   
Sbjct: 293 SVATYTTMIDGYCRNRRIDKALSVLSEMEITGVMPSELTYSALLNGYCKVSMLGPALDLM 352

Query: 172 EQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206
             LKS G  I K +   LI+ +   GE  KA+Q++
Sbjct: 353 VDLKSRGITINKTMCTILIDGFCQVGEISKAKQIL 387


>gi|224065693|ref|XP_002301924.1| predicted protein [Populus trichocarpa]
 gi|222843650|gb|EEE81197.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 104/225 (46%), Gaps = 8/225 (3%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P + ++  L+   C   K   A ++ E+M++   +P   T N ++++  +   ++ V+
Sbjct: 477 IEPDTITWNTLVDCHCKAGKHDRAEELFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVK 536

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +    L PN+ T+ ++I +  K   FD A   LDD+K   L P+++MYNA++  Y
Sbjct: 537 NLLTNMRSQGLLPNAVTYTTLIDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAY 596

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY---EQLKSAGGQITK 183
            ++     A+     M    +KP     + LI+    +   ++ +   + +K    +   
Sbjct: 597 AQRGLSDQAVSAFWAMRDDGLKPSLLALNSLINAFGKDRRDVEAFVVLQYMKENDLKPDV 656

Query: 184 YVFMALINAYTTCGEFEKARQV----VLDAEIP-VKSRSEVKSAL 223
             +  L+ A     +F+K   V    +L    P  K+R+ ++SAL
Sbjct: 657 VTYTTLMKALILVEKFDKVPSVYEEMILSGCTPDRKARAMLRSAL 701



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 93/192 (48%), Gaps = 8/192 (4%)

Query: 98  DSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYL 157
           + A ++ +++++  L P    YNA++ GY +   ++ A  V+ EME++ V P+ QT+S L
Sbjct: 323 EEAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQTYSLL 382

Query: 158 IH---NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAE-IPV 213
           I    N    E      ++++++  Q   YVF  ++ +Y   GE++K  QV+ + E   V
Sbjct: 383 IDAYGNAERWESARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQKTFQVLREMEDSGV 442

Query: 214 KSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI--ALIEHLNSEGELNRL 271
           +      + L+           A+  ++ +   G  +EP  +    L++     G+ +R 
Sbjct: 443 RPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEG--IEPDTITWNTLVDCHCKAGKHDRA 500

Query: 272 IQLLEEVHDPDY 283
            +L EE+ +  Y
Sbjct: 501 EELFEEMMEKGY 512



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/257 (20%), Positives = 115/257 (44%), Gaps = 18/257 (7%)

Query: 33  VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92
           + E+M    L P T   N++L    ++        +   +    + PN +T+  +I    
Sbjct: 328 IFEEMRDNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQTYSLLIDAYG 387

Query: 93  KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152
             + ++SA  +L +++  N+ P A +++ I+A Y  K + Q    VL+EME + V+PD  
Sbjct: 388 NAERWESARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQKTFQVLREMEDSGVRPDRI 447

Query: 153 TFSYLI-----HNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVL 207
            ++ LI      NC +    +  ++++ S G +     +  L++ +   G+ ++A ++  
Sbjct: 448 FYNVLIDTFGKFNCLDHA--MATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEELFE 505

Query: 208 D----AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV--IALIEH 261
           +      +P  +   +   ++++     R  D   +   ++  G  L P AV    LI+ 
Sbjct: 506 EMMEKGYLPCNTTFNI---MINSFGDQERWDDVKNLLTNMRSQG--LLPNAVTYTTLIDI 560

Query: 262 LNSEGELNRLIQLLEEV 278
               G  +  I+ L+++
Sbjct: 561 YGKSGRFDDAIECLDDM 577



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/271 (19%), Positives = 122/271 (45%), Gaps = 7/271 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  LI    +  +   A  V+++M    + P+    + IL +  +  E+    
Sbjct: 372 VLPNEQTYSLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQKTF 431

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           ++   +    ++P+   +  +I    K    D A +  D +    + P    +N ++  +
Sbjct: 432 QVLREMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCH 491

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQITK 183
            +      A  + +EM +    P + TF+ +I++  ++E   D+      ++S G     
Sbjct: 492 CKAGKHDRAEELFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNA 551

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEE 242
             +  LI+ Y   G F+ A + + D +   +K  S + +AL++A A  G +  A+  +  
Sbjct: 552 VTYTTLIDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAYAQRGLSDQAVSAFWA 611

Query: 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQ 273
           +++ G  L+P +++AL   +N+ G+  R ++
Sbjct: 612 MRDDG--LKP-SLLALNSLINAFGKDRRDVE 639



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 81/169 (47%), Gaps = 12/169 (7%)

Query: 108 KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI-----HNCS 162
           ++ NL P    YNA+++   R  D++ AL ++  M +     D   +S +I     +N +
Sbjct: 193 QKQNLTPLT--YNALISACARNNDIEKALNLICRMREDGYPSDLVNYSLIIRSLMKNNRA 250

Query: 163 NEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ---VVLDAEIPVKSRSEV 219
           N   + K Y ++     ++   ++  +I  +   G+ +KA +   VV  + + VK+ + V
Sbjct: 251 NSSILQKIYREIDRDKLEVDVQLWNDIIVGFAKAGDLDKALEFLGVVQGSGLSVKTATLV 310

Query: 220 KSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGEL 268
              ++  L + GRT +A  ++EE+++ G     RA  AL+      G L
Sbjct: 311 --TVIWGLGNCGRTEEAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLL 357



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 50/235 (21%), Positives = 103/235 (43%), Gaps = 16/235 (6%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A+   ++M+   + P T T N+++    ++ + +    ++  +      P + TF  MI+
Sbjct: 465 AMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEELFEEMMEKGYLPCNTTFNIMIN 524

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
                + +D   +LL +++   L+P A  Y  ++  Y +      A+  L +M+ A +KP
Sbjct: 525 SFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLIDIYGKSGRFDDAIECLDDMKAAGLKP 584

Query: 150 DSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ-- 204
            S  ++ L++  +     +  +  +  ++  G + +     +LINA      F K R+  
Sbjct: 585 SSTMYNALLNAYAQRGLSDQAVSAFWAMRDDGLKPSLLALNSLINA------FGKDRRDV 638

Query: 205 ---VVLD--AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRA 254
              VVL    E  +K      + L+ AL    +      VYEE+  +GC  + +A
Sbjct: 639 EAFVVLQYMKENDLKPDVVTYTTLMKALILVEKFDKVPSVYEEMILSGCTPDRKA 693


>gi|115444451|ref|NP_001046005.1| Os02g0167200 [Oryza sativa Japonica Group]
 gi|113535536|dbj|BAF07919.1| Os02g0167200, partial [Oryza sativa Japonica Group]
          Length = 526

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 91/177 (51%), Gaps = 14/177 (7%)

Query: 76  NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135
             +PN  T+ ++++  +K +D  SA ++ D +      P+ + +N +++GY +++  Q  
Sbjct: 69  GFEPNEVTYSNLLASCIKARDVHSARAMFDKISR----PSVTTWNTLLSGYCQEEQHQDT 124

Query: 136 LMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQI----TKYVFMALIN 191
           + + + M+  NV+PD  T + ++ +CS +  I+ +  Q+ SA  +       +V   L++
Sbjct: 125 IELFRRMQHQNVQPDRTTLAVILSSCS-KLGILDFGRQVHSASVRFLLHNDMFVASGLVD 183

Query: 192 AYTTCGEFEKARQVVLDAEIPVKSRSEV-KSALVSALASHGRTSDAIIVYEEIKEAG 247
            Y+ CG+   AR +       +  R  V  ++++S L  H    +A   +++++E G
Sbjct: 184 MYSKCGQIGIARSIF----NKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENG 236



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/198 (19%), Positives = 85/198 (42%), Gaps = 7/198 (3%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           PS  ++  L++  C   +    +++  +M    + P   T+  IL +C +    +  R++
Sbjct: 103 PSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQV 162

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +       L  +      ++ +  K      A S+ + + E +++     +N+I++G   
Sbjct: 163 HSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVV----CWNSIISGLTI 218

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYV 185
               + A    K+M +  + P   +++ +I++CS    I    + + Q+   G     YV
Sbjct: 219 HSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYV 278

Query: 186 FMALINAYTTCGEFEKAR 203
             ALI+ Y  CG  + AR
Sbjct: 279 GSALIDMYAKCGNMDDAR 296



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 40/205 (19%), Positives = 89/205 (43%), Gaps = 10/205 (4%)

Query: 30  ALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89
           A D  +QM +  ++P+  +  S++++C         R+I+  +       N     ++I 
Sbjct: 225 AFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALID 284

Query: 90  LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149
           +  K  + D A    D +   N++     +N ++ GY +      A+ + + M     KP
Sbjct: 285 MYAKCGNMDDARLFFDTMMMKNIVA----WNEMIHGYAQNGLGDKAVELFEYMLTTEQKP 340

Query: 150 DSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQIT-KYVFMALINAYTTCGEFEKARQV 205
           D+ TF  ++  CS+    +  + ++  ++++ G I     +  LI+A    G F +   +
Sbjct: 341 DAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEAL 400

Query: 206 VLDAEIPVKSRSEVKSALVSALASH 230
           +   ++P K    +   L++A   H
Sbjct: 401 I--HKMPCKDDPIIWEVLLAACVVH 423


>gi|356547426|ref|XP_003542113.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Glycine max]
          Length = 825

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 89/467 (19%), Positives = 191/467 (40%), Gaps = 23/467 (4%)

Query: 8   TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
            P    Y  +I   C    +  A   + ++    ++P+ ET  ++++   ++ EF  V +
Sbjct: 237 VPHVVFYNMIIDGYCKKGDLQCATRALNELKMKGVLPTVETYGALINGFCKAGEFEAVDQ 296

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +   +    L  N + F ++I    K      A  +L  + EM   P  + YN ++    
Sbjct: 297 LLTEMAARGLNMNVKVFNNVIDAEYKYGLVTEAAEMLRRMAEMGCGPDITTYNIMINFSC 356

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQL---KSAGGQITKY 184
           +   ++ A  +L++ ++  + P+  +++ L+H    + D +K    L      G +    
Sbjct: 357 KGGRIEEADELLEKAKERGLLPNKFSYTPLMHAYCKKGDYVKASGMLFRIAEIGEKSDLV 416

Query: 185 VFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243
            + A I+     GE + A  V     E  V   +++ + L+S L   GR     ++  E+
Sbjct: 417 SYGAFIHGVVVAGEIDVALMVREKMMEKGVFPDAQIYNILMSGLCKKGRIPAMKLLLSEM 476

Query: 244 KEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEV--HDPDYWMDGCCRLILHCVRFK 299
            +   N++P   +   LI+     GEL+  I++ + +     D  + G   +I    +F 
Sbjct: 477 LDR--NVQPDVYVFATLIDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFG 534

Query: 300 QLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLL-QFIKDELGLP 358
           +++ A   L ++       +   EY +S +          D+   L +  Q +K +    
Sbjct: 535 KMTDALSCLNEMNSVHHAPD---EYTYSTVI--DGYVKQHDMSSALKMFGQMMKHK--FK 587

Query: 359 PSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKL 418
           P+      L+       D+ RA  ++   ++  L  NV++Y  +   F  +G  + A+ +
Sbjct: 588 PNVITYTSLINGFCKKADMIRAEKVFSGMKSFDLVPNVVTYTTLVGGFFKAGKPERATSI 647

Query: 419 LSKM-----PKDDPHVRFVIQACKQTYTIPSLQKERGFEKDRDTLLL 460
              M       +D    ++I     T T P L +E+  +++  +L+L
Sbjct: 648 FELMLMNGCLPNDATFHYLINGLTNTATSPVLIEEKDSKENERSLIL 694



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 69/157 (43%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P    Y  +I   C   K+  AL  + +M      P   T ++++    + ++ +   
Sbjct: 516 VDPGIVGYNAMIKGFCKFGKMTDALSCLNEMNSVHHAPDEYTYSTVIDGYVKQHDMSSAL 575

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +++  +  H  KPN  T+ S+I+   K  D   A  +   +K  +L+P    Y  ++ G+
Sbjct: 576 KMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFSGMKSFDLVPNVVTYTTLVGGF 635

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163
           F+    + A  + + M      P+  TF YLI+  +N
Sbjct: 636 FKAGKPERATSIFELMLMNGCLPNDATFHYLINGLTN 672



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/202 (18%), Positives = 88/202 (43%), Gaps = 3/202 (1%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P +  Y  L++  C   ++     ++ +M+   + P      +++     + E +   
Sbjct: 446 VFPDAQIYNILMSGLCKKGRIPAMKLLLSEMLDRNVQPDVYVFATLIDGFIRNGELDEAI 505

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           +I+ +I    + P    + +MI    K      A S L+++  ++  P    Y+ ++ GY
Sbjct: 506 KIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNEMNSVHHAPDEYTYSTVIDGY 565

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLKSAGGQITK 183
            ++ D+  AL +  +M +   KP+  T++ LI+    + D+I   K +  +KS       
Sbjct: 566 VKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFSGMKSFDLVPNV 625

Query: 184 YVFMALINAYTTCGEFEKARQV 205
             +  L+  +   G+ E+A  +
Sbjct: 626 VTYTTLVGGFFKAGKPERATSI 647



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 92/203 (45%), Gaps = 3/203 (1%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           A++   P   +Y  +I +SC   ++  A +++E+  +  L+P+  +   ++HA  +  ++
Sbjct: 337 AEMGCGPDITTYNIMINFSCKGGRIEEADELLEKAKERGLLPNKFSYTPLMHAYCKKGDY 396

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
                +   I     K +  ++ + I   V   + D A  + + + E  + P A +YN +
Sbjct: 397 VKASGMLFRIAEIGEKSDLVSYGAFIHGVVVAGEIDVALMVREKMMEKGVFPDAQIYNIL 456

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE--DIIKYYEQLKSAGG 179
           M+G  +K  +    ++L EM   NV+PD   F+ LI     N E  + IK ++ +   G 
Sbjct: 457 MSGLCKKGRIPAMKLLLSEMLDRNVQPDVYVFATLIDGFIRNGELDEAIKIFKVIIRKGV 516

Query: 180 QITKYVFMALINAYTTCGEFEKA 202
                 + A+I  +   G+   A
Sbjct: 517 DPGIVGYNAMIKGFCKFGKMTDA 539



 Score = 41.6 bits (96), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 93/250 (37%), Gaps = 44/250 (17%)

Query: 75  HNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEM-NLMPTASMYNAIMAGYFRKKDVQ 133
            +LKP  E F ++I    +    D A  L   ++EM N  PT    N ++ G  +   V 
Sbjct: 124 QHLKPTREAFSALILAYAESGSLDRALQLFHTVREMHNCFPTFVASNLLLNGLVKSGKVD 183

Query: 134 GALMVLKEMEQAN----VKPDSQTFSYLIHNCSN----EED------------------- 166
            AL +  +M Q +       D+ T S ++    N    EE                    
Sbjct: 184 VALQLYDKMLQTDDGTGAVVDNYTTSIMVKGLCNLGKIEEGRRLIKHRWGKCCVPHVVFY 243

Query: 167 --IIKYY-------------EQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AE 210
             II  Y              +LK  G   T   + ALIN +   GEFE   Q++ + A 
Sbjct: 244 NMIIDGYCKKGDLQCATRALNELKMKGVLPTVETYGALINGFCKAGEFEAVDQLLTEMAA 303

Query: 211 IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNR 270
             +    +V + ++ A   +G  ++A  +   + E GC  +      +I      G +  
Sbjct: 304 RGLNMNVKVFNNVIDAEYKYGLVTEAAEMLRRMAEMGCGPDITTYNIMINFSCKGGRIEE 363

Query: 271 LIQLLEEVHD 280
             +LLE+  +
Sbjct: 364 ADELLEKAKE 373


>gi|297833654|ref|XP_002884709.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330549|gb|EFH60968.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 689

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 85/459 (18%), Positives = 185/459 (40%), Gaps = 51/459 (11%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  LI  SC   +   A   +  M +    P   + +++++   ++ + +   
Sbjct: 145 VAPNLQTYNVLIKMSCKKKEFEKARGFLNWMWKEGFKPDVFSYSTVINDLAKTGKLDDAL 204

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKE-MNLMPTASMYNAIMAG 125
            ++  +    + P+   +  +I   +K KD   A  L D L E  ++ P    +N +++G
Sbjct: 205 ELFDEMSERRVAPDVTCYNILIDGFLKEKDHKMAMQLWDKLLEDSSVYPNVKTHNIMISG 264

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YYEQLKSAGGQIT 182
             +   V   L +   M+Q   + D  T+S LIH   +E ++ K    + +L      I 
Sbjct: 265 LSKCGRVDDCLKIWDRMKQNEREKDLYTYSSLIHGLCDEGNVDKAESVFNELVERKAFID 324

Query: 183 KYVFMALINAYTTCGEFEKARQV-----------VLDAEIPVKSRSE------------- 218
              +  ++  +  CG+ +++ ++           ++   I +K   E             
Sbjct: 325 VVTYNTMLGGFCRCGKIKESLELWRIMEQRNSVNIVSYNILIKGLLENGKIDEATMIWRL 384

Query: 219 -----------VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267
                           +  L  +G  + A+ V +E++  G +L+  A  ++I+ L  +  
Sbjct: 385 MPAKGYAADNTTYGIFIHGLCVNGYVNKALGVMQEVESKGGHLDVYAYASIIDCLCKKRR 444

Query: 268 LNRLIQLLEEV--HDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYH 325
           L     L++E+  H  +     C  LI   +R  +LS A+ L++ +    K+  +     
Sbjct: 445 LEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLSDASLLMRGMG---KNGCLPTVVS 501

Query: 326 FSEIFCQIATTDPPDVQIGLDLLQFIKDEL--GLPPSRKCLDFLLGACVNARDLKRAHLI 383
           ++ + C +        + G +   F+K+ L  GL P  K    LLG     R ++ A  +
Sbjct: 502 YNILICGLCEAG----KFG-EASAFVKEMLENGLKPDLKTYSILLGGLCRDRKIELALEL 556

Query: 384 WKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422
           W ++  +GL  +V+ +  +     + G    A  +++ M
Sbjct: 557 WHQFLQSGLEPDVMMHNILIHGLCSVGKLDDAMTVMANM 595



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 82/187 (43%), Gaps = 3/187 (1%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P+  SY  LI   C+  K   A   V++M++  L P  +T + +L       +  L   +
Sbjct: 497 PTVVSYNILICGLCEAGKFGEASAFVKEMLENGLKPDLKTYSILLGGLCRDRKIELALEL 556

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +       L+P+      +I     +   D A +++ +++  N       YN +M GYF+
Sbjct: 557 WHQFLQSGLEPDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGYFK 616

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYV 185
            +D   A ++   M +  ++PD  +++ ++     C      I++++  ++ G   T Y 
Sbjct: 617 VRDSNRATVIWGYMYKMGLQPDIISYNTILKGLCLCHRVSYAIEFFDDARNHGIFPTVYT 676

Query: 186 FMALINA 192
           +  L+ A
Sbjct: 677 WNILVRA 683



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 33/159 (20%), Positives = 65/159 (40%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P   +Y  L+   C   K+ +AL++  Q +Q  L P     N ++H      + +   
Sbjct: 530 LKPDLKTYSILLGGLCRDRKIELALELWHQFLQSGLEPDVMMHNILIHGLCSVGKLDDAM 589

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   + H N   N  T+ +++    K++D + A  +   + +M L P    YN I+ G 
Sbjct: 590 TVMANMEHRNCTANLVTYNTLMEGYFKVRDSNRATVIWGYMYKMGLQPDIISYNTILKGL 649

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE 165
                V  A+    +     + P   T++ L+    N +
Sbjct: 650 CLCHRVSYAIEFFDDARNHGIFPTVYTWNILVRAVVNRK 688



 Score = 42.7 bits (99), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 30/139 (21%), Positives = 61/139 (43%), Gaps = 3/139 (2%)

Query: 75  HNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQG 134
           H ++ NS    ++I   ++      A  L+  + +   +PT   YN ++ G         
Sbjct: 458 HGVELNSHVCNALIGGLIRDSRLSDASLLMRGMGKNGCLPTVVSYNILICGLCEAGKFGE 517

Query: 135 ALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITKYVFMALIN 191
           A   +KEM +  +KPD +T+S L+     +  I   ++ + Q   +G +    +   LI+
Sbjct: 518 ASAFVKEMLENGLKPDLKTYSILLGGLCRDRKIELALELWHQFLQSGLEPDVMMHNILIH 577

Query: 192 AYTTCGEFEKARQVVLDAE 210
              + G+ + A  V+ + E
Sbjct: 578 GLCSVGKLDDAMTVMANME 596


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 106/238 (44%), Gaps = 20/238 (8%)

Query: 37  MVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKD 96
           + QG    S  +I S L AC       +  +++ ++    +  +     S++S+  K   
Sbjct: 216 LAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGL 275

Query: 97  FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSY 156
            D A +L D   EM +  T S Y+A+++GY +    + A +V K+M+  NV+PD+ T   
Sbjct: 276 IDQAIALFD---EMAVKDTVS-YSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVS 331

Query: 157 LIHNCSNEEDIIKYYEQLKSAGGQIT-------KYVFMALINAYTTCGEFEKARQVVLDA 209
           LI  CS+    +   +  + + G +          +  ALI+ Y  CG  + +RQV    
Sbjct: 332 LIPACSH----LAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVF--N 385

Query: 210 EIPVKSRSEVK-SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266
            +P  SR  V  + +++    HG   +A  ++ E+   G   +    I L+   +  G
Sbjct: 386 MMP--SRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSG 441



 Score = 42.7 bits (99), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 44/222 (19%), Positives = 93/222 (41%), Gaps = 14/222 (6%)

Query: 11  SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYP 70
           + SY  L++      +   A  V ++M    + P   T+ S++ AC         R  + 
Sbjct: 291 TVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHG 350

Query: 71  MICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASM--YNAIMAGYFR 128
            +    L   +    ++I +  K    D +  +       N+MP+  +  +N ++AGY  
Sbjct: 351 SVIIRGLASETSICNALIDMYAKCGRIDLSRQVF------NMMPSRDIVSWNTMIAGYGI 404

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII--KYYEQLKSAGGQITKYV- 185
               + A  +  EM      PD  TF  L+  CS+   +I  K++  +   G  +T  + 
Sbjct: 405 HGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRME 464

Query: 186 -FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSA 226
            ++ +++  +  G  ++A + +    +P+++   V  AL+ A
Sbjct: 465 HYICMVDLLSRGGFLDEAYEFI--QSMPLRADVRVWVALLGA 504


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 91/455 (20%), Positives = 188/455 (41%), Gaps = 62/455 (13%)

Query: 10  SSASYKKLITYS-CDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           +S  Y++++     D++KV  A+D+   MV+    PS    N +L A  +  +F LV  +
Sbjct: 46  ASGDYREILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISL 105

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    +  +  T+   I+   +      A ++L  + ++   P     ++++ GY  
Sbjct: 106 GEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCH 165

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKYV 185
            K +  A+ ++ +M +   KPD+ TF+ LIH     +   + +   +Q+   G Q     
Sbjct: 166 SKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVT 225

Query: 186 FMALINAYTTCGEFEKARQVV-------LDAEIPVKS----------------------- 215
           +  ++N     G+ + A  ++       ++A++ + +                       
Sbjct: 226 YGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMD 285

Query: 216 ----RSEV--KSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN 269
               R +V   S+L+S L ++GR SDA  +  ++ E   N       ALI+    EG+L 
Sbjct: 286 NKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLV 345

Query: 270 RLIQLLEEV----HDPDYW-----MDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEM 320
              +L +E+     DPD +     ++G C   +H     +L  A  + + +  K     +
Sbjct: 346 EAEKLYDEMIKRSIDPDIFTYSSLINGFC---MH----DRLDEAKHMFELMISKDCFPNV 398

Query: 321 AMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRA 380
                  + FC+        V+ G++L + +  + GL  +      L+     ARD   A
Sbjct: 399 VTYSTLIKGFCK-----AKRVEEGMELFREMS-QRGLVGNTVTYTTLIHGFFQARDCDNA 452

Query: 381 HLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSA 415
            +++K+  + G+  N+L+Y  +      +G    A
Sbjct: 453 QMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKA 487



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 108/250 (43%), Gaps = 6/250 (2%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           KL   P   +   L+   C   ++  A+ +V+QMV+    P T T  +++H      + +
Sbjct: 146 KLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKAS 205

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               +   +     +P+  T+ ++++   K  D D A SLL  +++  +     +YN I+
Sbjct: 206 EAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTII 265

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQ 180
            G  + K +  AL +  EM+   ++PD  T+S LI    N     D  +    +      
Sbjct: 266 DGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKIN 325

Query: 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEV--KSALVSALASHGRTSDAII 238
                F ALI+A+   G+  +A + + D  I      ++   S+L++    H R  +A  
Sbjct: 326 PNVVTFSALIDAFVKEGKLVEAEK-LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH 384

Query: 239 VYEEIKEAGC 248
           ++E +    C
Sbjct: 385 MFELMISKDC 394



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/246 (18%), Positives = 109/246 (44%), Gaps = 4/246 (1%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +I P+  ++  LI       K+  A  + ++M++  + P   T +S+++        +  
Sbjct: 323 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 382

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           + ++ ++   +  PN  T+ ++I    K K  +    L  ++ +  L+     Y  ++ G
Sbjct: 383 KHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHG 442

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE--DIIKYYEQLKSAGGQIT 182
           +F+ +D   A MV K+M    V P+  T++ L+   C N +    +  +E L+ +  +  
Sbjct: 443 FFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPD 502

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYE 241
            Y +  +I      G+ E   ++  +  +   S + +  + ++S     G   +A  + +
Sbjct: 503 IYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLK 562

Query: 242 EIKEAG 247
           ++KE G
Sbjct: 563 KMKEDG 568



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/205 (20%), Positives = 93/205 (45%), Gaps = 9/205 (4%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P   +Y  LI+  C+  +   A  ++  M++ ++ P+  T ++++ A  +  +     
Sbjct: 289 IRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAE 348

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           ++Y  +   ++ P+  T+ S+I+        D A  + + +   +  P    Y+ ++ G+
Sbjct: 349 KLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGF 408

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH------NCSNEEDIIKYYEQLKSAGGQ 180
            + K V+  + + +EM Q  +  ++ T++ LIH      +C N + + K   Q+ S G  
Sbjct: 409 CKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFK---QMVSVGVH 465

Query: 181 ITKYVFMALINAYTTCGEFEKARQV 205
                +  L++     G+  KA  V
Sbjct: 466 PNILTYNILLDGLCKNGKLAKAMVV 490



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/300 (20%), Positives = 134/300 (44%), Gaps = 23/300 (7%)

Query: 9   PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           P   +Y  ++   C    + +AL ++++M +G++       N+I+    +    +    +
Sbjct: 221 PDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNL 280

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           +  + +  ++P+  T+ S+IS       +  A  LL D+ E  + P    ++A++  + +
Sbjct: 281 FTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 340

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNEE-DIIKYYEQLKSAGGQITKYVF 186
           +  +  A  +  EM + ++ PD  T+S LI+  C ++  D  K+  +L      I+K  F
Sbjct: 341 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFEL-----MISKDCF 395

Query: 187 MALINAYTTCGEFEKARQVVLDAEI--PVKSRSEVKSALVSALASHG----RTSD-AIIV 239
             ++   T    F KA++V    E+   +  R  V + +      HG    R  D A +V
Sbjct: 396 PNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMV 455

Query: 240 YEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH----DPDYW-----MDGCCR 290
           ++++   G +        L++ L   G+L + + + E +     +PD +     ++G C+
Sbjct: 456 FKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCK 515



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/272 (17%), Positives = 120/272 (44%), Gaps = 7/272 (2%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           K  I P   +Y  LI   C   ++  A  + E M+  +  P+  T ++++    ++    
Sbjct: 356 KRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVE 415

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               ++  +    L  N+ T+ ++I    + +D D+A  +   +  + + P    YN ++
Sbjct: 416 EGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILL 475

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQ 180
            G  +   +  A++V + ++++ ++PD  T++ +I         ED  + +  L   G  
Sbjct: 476 DGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVS 535

Query: 181 ITKYVFMALINAYTTCGEFEKARQVV--LDAEIPVKSRSEVKSALVSALASHGRTSDAII 238
                +  +I+ +   G  E+A  ++  +  + P+ +     + + + L    R + A +
Sbjct: 536 PNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAEL 595

Query: 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNR 270
           + +E++  G   +  + I L+ ++  +G L++
Sbjct: 596 I-KEMRSCGFAGDA-STIGLVTNMLHDGRLDK 625


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/245 (21%), Positives = 111/245 (45%), Gaps = 5/245 (2%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           +I P+  ++  LI       K+  A  + E+M+Q  + P T T N +++        +  
Sbjct: 323 KINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEA 382

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           ++++  +   +  PN +T+ ++I+   K K  +    L  ++ +  L+     Y  I+ G
Sbjct: 383 KQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQG 442

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CS--NEEDIIKYYEQLKSAGGQIT 182
           +F+  D   A MV K+M    V  D  T+S L+H  CS    +  +  ++ L+ +  ++ 
Sbjct: 443 FFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELN 502

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242
            +++  +I      G+  +A    L   + +K      + ++S L S     +A  ++ +
Sbjct: 503 IFIYNTMIEGMCKAGKVGEAWD--LFCSLSIKPDVVTYNTMISGLCSKRLLQEADDLFRK 560

Query: 243 IKEAG 247
           +KE G
Sbjct: 561 MKEDG 565



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/261 (19%), Positives = 116/261 (44%), Gaps = 6/261 (2%)

Query: 14  YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73
           +  +I   C    V VA+D+  +M    + P+  T NS+++       ++   R+   + 
Sbjct: 261 FNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNML 320

Query: 74  HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133
              + PN  TF ++I    K      A  L +++ + ++ P    YN ++ G+     + 
Sbjct: 321 EKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLD 380

Query: 134 GALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKYYEQLKSAGGQITKYVFMALI 190
            A  + K M   +  P+ QT++ LI+    C   ED ++ + ++   G       +  +I
Sbjct: 381 EAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTII 440

Query: 191 NAYTTCGEFEKARQVVLDAEIPVKSRSEVK--SALVSALASHGRTSDAIIVYEEIKEAGC 248
             +   G+ + A Q+V    +  +  +++   S L+  L S+G+   A+++++ ++++  
Sbjct: 441 QGFFQAGDCDSA-QMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEM 499

Query: 249 NLEPRAVIALIEHLNSEGELN 269
            L       +IE +   G++ 
Sbjct: 500 ELNIFIYNTMIEGMCKAGKVG 520



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/424 (19%), Positives = 181/424 (42%), Gaps = 21/424 (4%)

Query: 10  SSASYKKLITYS-CDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRI 68
           +S  Y++++     D++KV  A+D+   MV+    PS    N +L A  +  +F LV  +
Sbjct: 46  ASGDYREILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISL 105

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
              +    +  +  T+   I+   +      A ++L  + ++   P     ++++ GY  
Sbjct: 106 GEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCH 165

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKYV 185
            K +  A+ ++ +M +   KPD+ TF+ LIH     +   + +   +Q+   G Q     
Sbjct: 166 SKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVT 225

Query: 186 FMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244
           +  ++N     G+ + A  ++   E   +K+   + + ++ +L  +     A+ ++ E++
Sbjct: 226 YGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEME 285

Query: 245 EAGCNLEPRAVI--ALIEHLNSEG---ELNRLI-QLLEEVHDPDYWMDGCCRLILHCVRF 298
             G  + P  V   +LI  L + G   + +RL+  +LE+  +P+        LI    + 
Sbjct: 286 TKG--IRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNA--LIDAFFKE 341

Query: 299 KQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLP 358
            +L  A  L +++  +  D +          FC     D         + +F+  +  LP
Sbjct: 342 GKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAK-----QMFKFMVSKDCLP 396

Query: 359 PSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKL 418
             +     + G C   + ++    +++E    GL  N ++Y  + + F  +G+  SA  +
Sbjct: 397 NIQTYNTLINGFC-KCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMV 455

Query: 419 LSKM 422
             +M
Sbjct: 456 FKQM 459



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/205 (20%), Positives = 91/205 (44%), Gaps = 3/205 (1%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN 63
           KL   P   +   L+   C   ++  A+ +V+QMV+    P T T  +++H      + +
Sbjct: 146 KLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKAS 205

Query: 64  LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123
               +   +     +P+  T+ ++++   K  D D A +LL+ ++   +     ++N I+
Sbjct: 206 EAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTII 265

Query: 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH---NCSNEEDIIKYYEQLKSAGGQ 180
               + + V+ A+ +  EME   ++P+  T++ LI+   N     D  +    +      
Sbjct: 266 DSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKIN 325

Query: 181 ITKYVFMALINAYTTCGEFEKARQV 205
                F ALI+A+   G+  +A ++
Sbjct: 326 PNVVTFNALIDAFFKEGKLVEAEKL 350



 Score = 42.7 bits (99), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 31/147 (21%), Positives = 66/147 (44%), Gaps = 3/147 (2%)

Query: 13  SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72
           +Y  L+   C   K+  AL + + + + E+  +    N+++    ++ +   V   + + 
Sbjct: 470 TYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGK---VGEAWDLF 526

Query: 73  CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132
           C  ++KP+  T+ +MIS     +    A  L   +KE   +P +  YN ++    R  D 
Sbjct: 527 CSLSIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDR 586

Query: 133 QGALMVLKEMEQANVKPDSQTFSYLIH 159
             +  ++KEM  +    D+ T S + +
Sbjct: 587 AASAELIKEMRSSGFVGDASTISLVTN 613


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 142/327 (43%), Gaps = 26/327 (7%)

Query: 4   KLEITPSSASYKKLITYSCDLLKVHVALD----VVEQMVQGELVPSTETINSILHACEES 59
           KL   P   +Y  LI   C   +V  +L+    +V Q ++ + V     IN +    +  
Sbjct: 112 KLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTG 171

Query: 60  YEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMY 119
               L+R+I   IC    +P+   + ++I    K K    A+ L  ++ E  + P    Y
Sbjct: 172 PALRLLRKIEGEIC----RPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTY 227

Query: 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGG 179
            +++ G+     +  A  +L EM   NV P+  TF+ L+     E  +     + KS   
Sbjct: 228 TSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKM----REAKSLVA 283

Query: 180 QITK-------YVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRSEVKSALVSALASHG 231
            + K       + + AL++ Y    E  KA+ V  + A++ V       S ++S L+   
Sbjct: 284 VMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMK 343

Query: 232 RTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD----PDYWMDG 287
              +A+ ++E ++      +  A  +LI+ L   G +N  ++ ++E+HD    P+  +  
Sbjct: 344 MLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPN--VIT 401

Query: 288 CCRLILHCVRFKQLSSATDLLKQLKDK 314
              LI    +  Q+  A  LLK++KD+
Sbjct: 402 YTSLIDALCKSHQVDKAIALLKKIKDQ 428



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/280 (19%), Positives = 126/280 (45%), Gaps = 8/280 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  +Y  LI   C + ++  A  ++ +MV   + P+  T N+++    +  +    +
Sbjct: 220 VFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAK 279

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +  ++    + P+  T+ +++     +K+   A ++ + + +M +      Y+ +++G 
Sbjct: 280 SLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGL 339

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQITK 183
            + K +  A+ + + M   NV PD   +S LI        I   +KY +++   G     
Sbjct: 340 SKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNV 399

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEI---PVKSRSEVKSALVSALASHGRTSDAIIVY 240
             + +LI+A     + +KA  + L  +I    +++     + LV  L   GR +DA  V+
Sbjct: 400 ITYTSLIDALCKSHQVDKA--IALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVF 457

Query: 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           +++   G N++      +I  L  E   +  + LL ++ D
Sbjct: 458 QDLLMKGHNVDVVTYSIMINGLCKESLFDEALTLLSKMED 497



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/279 (18%), Positives = 119/279 (42%), Gaps = 4/279 (1%)

Query: 6   EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
            + P+  ++  L+   C   K+  A  +V  M++  + P   T N+++       E    
Sbjct: 254 NVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKA 313

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           + ++ ++    +  +  ++  MIS   K+K  D A  L + ++  N++P    Y++++ G
Sbjct: 314 KNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDG 373

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI---IKYYEQLKSAGGQIT 182
             +   +  AL  + EM      P+  T++ LI        +   I   +++K  G Q  
Sbjct: 374 LCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQAN 433

Query: 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVK-SALVSALASHGRTSDAIIVYE 241
            Y +  L++     G    A++V  D  +   +   V  S +++ L       +A+ +  
Sbjct: 434 MYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCKESLFDEALTLLS 493

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280
           ++++ GC  +  A   +I     +   ++  +LL E+ D
Sbjct: 494 KMEDKGCVPDAIAYETIINAFFEKDMNDKAEKLLREMID 532



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 41/202 (20%), Positives = 83/202 (41%), Gaps = 8/202 (3%)

Query: 3   AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF 62
           A++ +T    SY  +I+    +  +  A+D+ E M    ++P     +S++    +S   
Sbjct: 321 AQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRI 380

Query: 63  NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122
           N   +    +      PN  T+ S+I    K    D A +LL  +K+  +      YN +
Sbjct: 381 NSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNIL 440

Query: 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGG 179
           + G  +   +  A  V +++       D  T+S +I+    E   ++ +    +++  G 
Sbjct: 441 VDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCKESLFDEALTLLSKMEDKGC 500

Query: 180 QITKYVFMALINAYTTCGEFEK 201
                 +  +INA+     FEK
Sbjct: 501 VPDAIAYETIINAF-----FEK 517


>gi|410109945|gb|AFV61052.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rubella]
          Length = 394

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/276 (21%), Positives = 127/276 (46%), Gaps = 9/276 (3%)

Query: 9   PSSASYKKLITYS-CDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRR 67
           P+S  +  ++ +  C    + VA  V + + +  L PS  + N++++      + +   R
Sbjct: 121 PASLYFFNILMHRFCKERDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 180

Query: 68  IYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127
           +   +    ++P+  T+  +I+   K    D A  L D++    L+P    +  ++ G+ 
Sbjct: 181 LKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 240

Query: 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE---QLKSAGGQITKY 184
           +   V  AL + K+M   ++ PD  T++ LI+    + D+ + ++   ++   G +  K 
Sbjct: 241 KNGRVDLALEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKI 300

Query: 185 VFMALINAYTTCGEFEKA---RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
            + ALI+     G+ + A   R+ ++   I +   +   +AL+S L   GR+ DA  +  
Sbjct: 301 TYTALIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAY--TALISGLCQEGRSVDAEKMLR 358

Query: 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEE 277
           E+   G   + R    +I     +G++ +  +LL+E
Sbjct: 359 EMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKE 394



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 84/169 (49%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           + P+  ++  LI   C   +V +AL++ +QM+   L+P   T N++++   +  +     
Sbjct: 225 LVPNGVTFTTLIDGHCKNGRVDLALEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAH 284

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
            +   +    LKP+  T+ ++I    K  D D+A+     + + N+      Y A+++G 
Sbjct: 285 DLIDEMSMKGLKPDKITYTALIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGL 344

Query: 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK 175
            ++     A  +L+EM    +KPD++T++ +I+    + D+ K  + LK
Sbjct: 345 CQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLK 393



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 94/209 (44%), Gaps = 4/209 (1%)

Query: 1   MHAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60
           MHA   + P   +Y  LI   C   K+  A ++ ++M+   LVP+  T  +++    ++ 
Sbjct: 185 MHAS-GVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNG 243

Query: 61  EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120
             +L   IY  +   +L P+  T+ ++I    K  D   A+ L+D++    L P    Y 
Sbjct: 244 RVDLALEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYT 303

Query: 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE---DIIKYYEQLKSA 177
           A++ G  ++ D+  A    K M Q N++ D   ++ LI     E    D  K   ++ S 
Sbjct: 304 ALIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 363

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQVV 206
           G +     +  +IN +   G+  K  +++
Sbjct: 364 GLKPDARTYTMIINEFCKKGDVWKGSKLL 392



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 88/215 (40%), Gaps = 10/215 (4%)

Query: 62  FNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121
           F LV   Y  I       +   F  ++    K +D   A S+ D + +  L P+   YN 
Sbjct: 105 FKLVWGFYKEILESGYPASLYFFNILMHRFCKERDIRVAQSVFDAITKWGLRPSVVSYNT 164

Query: 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAG 178
           +M GY R  D+     +   M  + V+PD  T+S LI+    E   +D  + ++++   G
Sbjct: 165 LMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKG 224

Query: 179 GQITKYVFMALINAYTTCGEFEKA----RQVVLDAEIPVKSRSEVKSALVSALASHGRTS 234
                  F  LI+ +   G  + A    +Q++  + +P        + L+  L   G   
Sbjct: 225 LVPNGVTFTTLIDGHCKNGRVDLALEIYKQMLSQSLLP---DLITYNTLIYGLCKKGDLK 281

Query: 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN 269
            A  + +E+   G   +     ALI+    EG+L+
Sbjct: 282 QAHDLIDEMSMKGLKPDKITYTALIDGCCKEGDLD 316



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 105/240 (43%), Gaps = 23/240 (9%)

Query: 69  YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128
           Y +   H      +T R ++   +K+K F   +    ++ E     +   +N +M  + +
Sbjct: 77  YRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKEILESGYPASLYFFNILMHRFCK 136

Query: 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA----GGQITKY 184
           ++D++ A  V   + +  ++P   +++ L++      D+ + + +LKSA    G Q   Y
Sbjct: 137 ERDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGF-RLKSAMHASGVQPDVY 195

Query: 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKS---RSEVKSALVSALASHGRTSDAIIVYE 241
            +  LIN      + + A +  L  E+ VK         + L+     +GR   A+ +Y+
Sbjct: 196 TYSVLINGLCKESKMDDANE--LFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLALEIYK 253

Query: 242 EIKEAGCNLEPRAVI--ALIEHLNSEGELNRLIQLLEEVH----DPD-----YWMDGCCR 290
           ++     +L P  +    LI  L  +G+L +   L++E+      PD       +DGCC+
Sbjct: 254 QMLSQ--SLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTALIDGCCK 311


>gi|356544457|ref|XP_003540667.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
           chloroplastic-like [Glycine max]
          Length = 711

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 98/218 (44%), Gaps = 17/218 (7%)

Query: 7   ITPSSASYKKLI-TYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLV 65
           I P+S SY  LI  YS        A    E M +  + PS ET  ++L A   + +   +
Sbjct: 476 IKPTSHSYTALIHAYSVSGWH-EKAYAAFENMQREGIKPSIETYTALLDAFRRAGDTQTL 534

Query: 66  RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125
            +I+ ++  + ++    TF +++    K   +  A  ++     + L PT   YN +M  
Sbjct: 535 MKIWKLMRRYKVEGTRVTFNTLVDGFAKHGHYKEARDVISKFANVGLHPTVMTYNMLMNA 594

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK--YYEQLKSAGGQITK 183
           Y R         +L+EM   N+KPDS T+S +I+      D  +  +Y Q     GQ+  
Sbjct: 595 YARGGQHSKLPELLEEMAAHNLKPDSVTYSTMIYAFLRVRDFSQAFFYHQEMVKSGQVID 654

Query: 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKS 221
           +      N+Y      +K R  +LDA+  +K+R + +S
Sbjct: 655 F------NSY------QKLR-AILDAKAAIKNRKDRRS 679



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/254 (20%), Positives = 119/254 (46%), Gaps = 7/254 (2%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           ++ ++  Y  L+   C   +V  A  +  +M    +  +  T N +++A     +  +V 
Sbjct: 370 VSSNAIVYNTLMDAYCKSNRVEEAEGLFIEMKTKGIKHTEATFNILMYAYSRKMQPEIVE 429

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDF-DSAYSLLDDLKEMNLMPTASMYNAIMAG 125
           ++   +    LKPN++++  +IS   K K+  D A      +K+  + PT+  Y A++  
Sbjct: 430 KLMAEMQDAGLKPNAKSYTCLISAYGKQKNMSDMAADAFLKMKKDGIKPTSHSYTALIHA 489

Query: 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQIT 182
           Y      + A    + M++  +KP  +T++ L+       + + ++K ++ ++    + T
Sbjct: 490 YSVSGWHEKAYAAFENMQREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMRRYKVEGT 549

Query: 183 KYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241
           +  F  L++ +   G +++AR V+   A + +       + L++A A  G+ S    + E
Sbjct: 550 RVTFNTLVDGFAKHGHYKEARDVISKFANVGLHPTVMTYNMLMNAYARGGQHSKLPELLE 609

Query: 242 EIKEAGCNLEPRAV 255
           E+  A  NL+P +V
Sbjct: 610 EM--AAHNLKPDSV 621



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 83/181 (45%), Gaps = 5/181 (2%)

Query: 103 LLDDLKEMNLMPTASMYNAIMAGYFRKKDVQG-ALMVLKEMEQANVKPDSQTFSYLIHNC 161
           L+ ++++  L P A  Y  +++ Y ++K++   A     +M++  +KP S +++ LIH  
Sbjct: 431 LMAEMQDAGLKPNAKSYTCLISAYGKQKNMSDMAADAFLKMKKDGIKPTSHSYTALIHAY 490

Query: 162 S---NEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV-LDAEIPVKSRS 217
           S     E     +E ++  G + +   + AL++A+   G+ +   ++  L     V+   
Sbjct: 491 SVSGWHEKAYAAFENMQREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMRRYKVEGTR 550

Query: 218 EVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEE 277
              + LV   A HG   +A  V  +    G +        L+      G+ ++L +LLEE
Sbjct: 551 VTFNTLVDGFAKHGHYKEARDVISKFANVGLHPTVMTYNMLMNAYARGGQHSKLPELLEE 610

Query: 278 V 278
           +
Sbjct: 611 M 611



 Score = 45.1 bits (105), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 81/183 (44%), Gaps = 11/183 (6%)

Query: 100 AYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159
           A  +L +L++  +   A +YN +M  Y +   V+ A  +  EM+   +K    TF+ L++
Sbjct: 358 ALIILSELEKKGVSSNAIVYNTLMDAYCKSNRVEEAEGLFIEMKTKGIKHTEATFNILMY 417

Query: 160 NCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIP---- 212
             S +   E + K   +++ AG +     +  LI+AY   G+ +    +  DA +     
Sbjct: 418 AYSRKMQPEIVEKLMAEMQDAGLKPNAKSYTCLISAY---GKQKNMSDMAADAFLKMKKD 474

Query: 213 -VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRL 271
            +K  S   +AL+ A +  G    A   +E ++  G         AL++     G+   L
Sbjct: 475 GIKPTSHSYTALIHAYSVSGWHEKAYAAFENMQREGIKPSIETYTALLDAFRRAGDTQTL 534

Query: 272 IQL 274
           +++
Sbjct: 535 MKI 537



 Score = 40.0 bits (92), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 5/135 (3%)

Query: 118 MYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI----HNCSNEEDIIKYYEQ 173
           +YNA ++G       + A  V + ME  NV PD  T S ++        + +D  +++E+
Sbjct: 270 VYNAAISGLLSSGRCEDAWKVYESMEADNVLPDHVTCSIMVIVMRKLGHSAKDAWQFFEK 329

Query: 174 LKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGR 232
           +   G +  + V  ALI ++   G   +A  ++ + E   V S + V + L+ A     R
Sbjct: 330 MNGKGVKWGEEVLGALIKSFCVEGLMSEALIILSELEKKGVSSNAIVYNTLMDAYCKSNR 389

Query: 233 TSDAIIVYEEIKEAG 247
             +A  ++ E+K  G
Sbjct: 390 VEEAEGLFIEMKTKG 404


>gi|255660896|gb|ACU25617.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 484

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 140/330 (42%), Gaps = 26/330 (7%)

Query: 36  QMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIK 95
           +M+   + P+  T N ++     S +     R +  +    + P+  T+ +MI+   ++K
Sbjct: 140 KMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVK 199

Query: 96  DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFS 155
             + A     ++K  N+ PT   Y  ++ GY     V  AL +++EM+   +KP++ T+S
Sbjct: 200 KMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYS 259

Query: 156 YLIHNCSNEEDI----IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEI 211
            L+    N E +    +   E +          +FM LI+++   G  + A   VL A I
Sbjct: 260 TLLPGLCNAEKMSEARVILKEMMDKYLAPTDNXIFMRLISSHCKSGNLDAAAD-VLKAMI 318

Query: 212 PVKSRSEVK--SALVSALASHGRTSDAIIVYEEIKE--------AGCNLEPRAVIALIEH 261
            +   +E      L+      G+   A+ + +++ E        +  +LEP A   +IE+
Sbjct: 319 RLSVPTEAGHYGVLIENFCKXGQYDKAVKLLDKLIEKDIILRPQSTLHLEPSAYNPMIEY 378

Query: 262 LNSEGELNRLIQLLEE-----VHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFK 316
           L + G+  +   L+ +     V DP         LI    +     SA +LLK +  +  
Sbjct: 379 LCNNGQAXKAETLVRQLXKLGVQDP----TALNTLIRGHSQEGSPDSAFELLKIMLRRKV 434

Query: 317 DDEMAMEYHFSEIFCQIATTDPPDVQIGLD 346
           D E +   + S +   +   +P D +  LD
Sbjct: 435 DSEKSA--YNSLVQSYLKKNEPXDAKAALD 462



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/288 (20%), Positives = 127/288 (44%), Gaps = 24/288 (8%)

Query: 7   ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVR 66
           I P+  ++  +I       KV  A    E M   E+ P   T N++++      +     
Sbjct: 146 IEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAE 205

Query: 67  RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126
           + +  +   N++P   T+ ++I   V +   D A  L++++K   + P A  Y+ ++ G 
Sbjct: 206 KYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGL 265

Query: 127 FRKKDVQGALMVLKEMEQANVKP-DSQTFSYLIH------NCSNEEDIIKYYEQLK--SA 177
              + +  A ++LKEM    + P D+  F  LI       N     D++K   +L   + 
Sbjct: 266 CNAEKMSEARVILKEMMDKYLAPTDNXIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTE 325

Query: 178 GGQITKYVFMALINAYTTCGEFEKARQV---VLDAEIPVKSRSEVK------SALVSALA 228
            G      +  LI  +   G+++KA ++   +++ +I ++ +S +       + ++  L 
Sbjct: 326 AGH-----YGVLIENFCKXGQYDKAVKLLDKLIEKDIILRPQSTLHLEPSAYNPMIEYLC 380

Query: 229 SHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276
           ++G+   A  +  ++ + G   +P A+  LI   + EG  +   +LL+
Sbjct: 381 NNGQAXKAETLVRQLXKLGVQ-DPTALNTLIRGHSQEGSPDSAFELLK 427


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.320    0.135    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,921,850,437
Number of Sequences: 23463169
Number of extensions: 274605510
Number of successful extensions: 769165
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4276
Number of HSP's successfully gapped in prelim test: 5789
Number of HSP's that attempted gapping in prelim test: 697041
Number of HSP's gapped (non-prelim): 47126
length of query: 465
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 319
effective length of database: 8,933,572,693
effective search space: 2849809689067
effective search space used: 2849809689067
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 79 (35.0 bits)