Query 012365
Match_columns 465
No_of_seqs 521 out of 2284
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 01:52:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012365.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012365hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.5E-62 3.2E-67 487.5 52.3 441 9-456 435-916 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 9.9E-63 2.1E-67 488.7 50.3 443 6-459 365-851 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 9.3E-63 2E-67 497.5 39.2 434 8-459 149-593 (857)
4 PLN03077 Protein ECB2; Provisi 100.0 8E-61 1.7E-65 483.5 44.2 413 8-439 250-670 (857)
5 PLN03081 pentatricopeptide (PP 100.0 2.3E-60 5.1E-65 469.2 43.9 416 7-439 83-507 (697)
6 PLN03081 pentatricopeptide (PP 100.0 4.5E-56 9.7E-61 438.8 42.9 433 3-454 115-562 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4E-25 8.8E-30 228.6 49.1 405 9-429 463-870 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 5.2E-25 1.1E-29 227.7 46.6 397 10-424 498-899 (899)
9 PRK11788 tetratricopeptide rep 99.9 1.2E-20 2.7E-25 175.4 33.1 233 19-281 43-278 (389)
10 TIGR00990 3a0801s09 mitochondr 99.9 8.5E-18 1.8E-22 164.5 46.8 405 13-435 129-581 (615)
11 KOG4626 O-linked N-acetylgluco 99.9 2.2E-19 4.9E-24 160.5 28.8 370 45-431 115-491 (966)
12 PRK11788 tetratricopeptide rep 99.9 2.4E-19 5.2E-24 166.7 30.2 293 91-424 45-346 (389)
13 PRK11447 cellulose synthase su 99.9 3.8E-17 8.3E-22 170.4 46.7 391 18-423 276-738 (1157)
14 KOG4626 O-linked N-acetylgluco 99.9 2.4E-18 5.2E-23 154.0 29.8 405 14-438 51-464 (966)
15 PRK10049 pgaA outer membrane p 99.9 7.2E-17 1.6E-21 160.9 43.8 409 9-433 13-464 (765)
16 PRK15174 Vi polysaccharide exp 99.9 1.8E-17 4E-22 161.7 38.4 359 22-427 16-383 (656)
17 PRK11447 cellulose synthase su 99.8 8.8E-17 1.9E-21 167.7 44.0 410 7-430 57-529 (1157)
18 PRK15174 Vi polysaccharide exp 99.8 1.4E-16 3.1E-21 155.5 41.3 328 15-352 46-379 (656)
19 KOG4422 Uncharacterized conser 99.8 9.4E-17 2E-21 137.8 32.5 365 10-428 206-593 (625)
20 TIGR00990 3a0801s09 mitochondr 99.8 1.2E-15 2.7E-20 149.4 42.5 376 49-440 130-552 (615)
21 PRK09782 bacteriophage N4 rece 99.8 5.7E-15 1.2E-19 147.9 45.9 174 260-443 517-690 (987)
22 PRK14574 hmsH outer membrane p 99.8 6.3E-15 1.4E-19 144.6 44.3 395 21-430 44-518 (822)
23 PRK10049 pgaA outer membrane p 99.8 2.7E-15 5.8E-20 149.8 42.7 378 9-404 47-468 (765)
24 PRK09782 bacteriophage N4 rece 99.7 6.1E-13 1.3E-17 133.5 44.1 400 8-429 178-710 (987)
25 KOG4422 Uncharacterized conser 99.7 2.2E-13 4.7E-18 117.5 34.8 384 11-425 116-551 (625)
26 PRK14574 hmsH outer membrane p 99.7 2.3E-12 5.1E-17 126.8 43.8 381 6-404 62-525 (822)
27 KOG2002 TPR-containing nuclear 99.7 4.7E-13 1E-17 126.7 35.9 441 9-459 268-753 (1018)
28 KOG2002 TPR-containing nuclear 99.6 9.4E-12 2E-16 118.1 35.0 409 12-432 308-752 (1018)
29 KOG2076 RNA polymerase III tra 99.6 5.2E-11 1.1E-15 112.3 37.3 199 7-208 135-341 (895)
30 PRK10747 putative protoheme IX 99.6 1.8E-11 3.8E-16 113.1 33.2 290 14-313 85-389 (398)
31 TIGR00540 hemY_coli hemY prote 99.6 4.9E-12 1.1E-16 117.4 29.6 292 93-423 96-397 (409)
32 KOG4318 Bicoid mRNA stability 99.6 3.2E-12 6.9E-17 119.9 27.0 275 2-281 16-370 (1088)
33 KOG0495 HAT repeat protein [RN 99.6 4.3E-10 9.2E-15 102.6 39.4 398 19-429 414-850 (913)
34 KOG2003 TPR repeat-containing 99.6 5.5E-12 1.2E-16 109.8 26.3 413 14-438 204-671 (840)
35 PRK10747 putative protoheme IX 99.6 1.3E-11 2.8E-16 113.9 29.4 282 94-423 97-388 (398)
36 PF13429 TPR_15: Tetratricopep 99.5 2.8E-14 6E-19 125.8 9.5 261 121-424 13-276 (280)
37 COG2956 Predicted N-acetylgluc 99.5 6.6E-11 1.4E-15 98.8 28.3 294 24-352 48-345 (389)
38 TIGR00540 hemY_coli hemY prote 99.5 2.7E-10 5.8E-15 105.9 35.8 306 14-389 85-398 (409)
39 COG3071 HemY Uncharacterized e 99.5 2.1E-10 4.4E-15 98.8 31.3 208 17-251 88-297 (400)
40 PF13429 TPR_15: Tetratricopep 99.5 4.1E-14 8.8E-19 124.8 9.4 263 9-278 7-274 (280)
41 KOG0495 HAT repeat protein [RN 99.5 4.8E-09 1E-13 95.9 41.1 413 7-438 436-893 (913)
42 KOG1126 DNA-binding cell divis 99.5 2.1E-11 4.7E-16 111.3 23.6 286 96-427 334-622 (638)
43 PF13041 PPR_2: PPR repeat fam 99.5 1.4E-13 3.1E-18 85.3 6.3 50 9-58 1-50 (50)
44 KOG1155 Anaphase-promoting com 99.5 4.9E-09 1.1E-13 92.1 35.8 305 89-438 235-552 (559)
45 KOG1915 Cell cycle control pro 99.5 2.9E-08 6.3E-13 87.6 40.6 393 23-435 85-546 (677)
46 KOG2076 RNA polymerase III tra 99.4 4.7E-09 1E-13 99.5 36.9 349 54-426 147-513 (895)
47 KOG4318 Bicoid mRNA stability 99.4 2.3E-11 4.9E-16 114.3 20.6 340 32-424 11-369 (1088)
48 PF13041 PPR_2: PPR repeat fam 99.4 5.2E-13 1.1E-17 82.7 6.9 50 114-163 1-50 (50)
49 COG3071 HemY Uncharacterized e 99.4 2E-09 4.2E-14 92.9 30.4 282 95-423 98-388 (400)
50 KOG1915 Cell cycle control pro 99.4 1.2E-07 2.7E-12 83.7 40.4 379 11-404 107-548 (677)
51 KOG1126 DNA-binding cell divis 99.4 3.3E-10 7.2E-15 103.7 25.4 303 3-352 305-618 (638)
52 KOG2003 TPR repeat-containing 99.4 1.9E-09 4.1E-14 94.3 28.5 383 14-411 279-709 (840)
53 KOG0547 Translocase of outer m 99.4 6E-09 1.3E-13 92.1 31.6 418 14-454 118-598 (606)
54 KOG1155 Anaphase-promoting com 99.4 1.4E-08 3.1E-13 89.2 33.1 242 169-424 248-494 (559)
55 TIGR02521 type_IV_pilW type IV 99.4 1.1E-09 2.3E-14 94.1 25.6 202 45-280 30-231 (234)
56 COG2956 Predicted N-acetylgluc 99.4 2.5E-09 5.3E-14 89.6 25.4 257 129-428 48-314 (389)
57 TIGR02521 type_IV_pilW type IV 99.3 2.9E-09 6.3E-14 91.4 25.7 203 9-246 29-232 (234)
58 PF12569 NARP1: NMDA receptor- 99.3 3E-07 6.6E-12 86.2 40.2 289 17-313 10-333 (517)
59 PRK12370 invasion protein regu 99.3 9.7E-09 2.1E-13 99.3 30.3 133 10-145 255-401 (553)
60 KOG1173 Anaphase-promoting com 99.3 4.5E-08 9.8E-13 88.3 30.3 211 219-438 314-534 (611)
61 PRK12370 invasion protein regu 99.2 2.3E-08 5.1E-13 96.7 29.8 94 184-279 339-433 (553)
62 KOG2376 Signal recognition par 99.2 3.9E-07 8.5E-12 82.8 34.6 395 17-439 18-501 (652)
63 KOG1840 Kinesin light chain [C 99.2 1.9E-08 4.2E-13 92.9 26.7 251 112-423 195-477 (508)
64 KOG2047 mRNA splicing factor [ 99.2 1.2E-06 2.6E-11 80.6 37.1 157 48-208 104-273 (835)
65 KOG3785 Uncharacterized conser 99.2 2.8E-08 6.1E-13 84.4 24.7 205 222-439 290-507 (557)
66 KOG1129 TPR repeat-containing 99.2 2.8E-09 6E-14 89.4 18.5 236 181-427 221-460 (478)
67 KOG2047 mRNA splicing factor [ 99.2 7.8E-07 1.7E-11 81.8 35.0 127 13-145 140-277 (835)
68 KOG0547 Translocase of outer m 99.2 1.4E-07 3E-12 83.7 29.4 338 51-427 120-493 (606)
69 KOG1173 Anaphase-promoting com 99.2 1.4E-07 3E-12 85.3 29.8 429 10-457 15-524 (611)
70 KOG1840 Kinesin light chain [C 99.2 2.3E-08 4.9E-13 92.5 25.1 247 81-388 199-477 (508)
71 KOG1156 N-terminal acetyltrans 99.2 1E-06 2.2E-11 81.1 34.5 409 12-438 9-447 (700)
72 PF12569 NARP1: NMDA receptor- 99.1 3.9E-07 8.5E-12 85.5 31.8 251 53-313 11-290 (517)
73 KOG3785 Uncharacterized conser 99.1 6.2E-07 1.3E-11 76.5 29.2 381 18-424 29-456 (557)
74 KOG1129 TPR repeat-containing 99.0 7.2E-08 1.6E-12 81.1 18.8 227 50-282 227-459 (478)
75 KOG4162 Predicted calmodulin-b 99.0 1E-05 2.3E-10 76.2 34.1 127 290-426 655-784 (799)
76 PRK11189 lipoprotein NlpI; Pro 99.0 8.1E-07 1.8E-11 78.7 26.1 229 20-257 35-275 (296)
77 KOG4340 Uncharacterized conser 99.0 1.4E-06 3.1E-11 72.6 25.1 298 6-311 5-336 (459)
78 cd05804 StaR_like StaR_like; a 99.0 5.9E-06 1.3E-10 75.9 32.8 201 11-246 6-215 (355)
79 PF12854 PPR_1: PPR repeat 99.0 5.9E-10 1.3E-14 61.8 3.6 34 5-38 1-34 (34)
80 KOG1174 Anaphase-promoting com 99.0 1.2E-05 2.6E-10 70.3 30.6 313 78-437 191-512 (564)
81 PRK11189 lipoprotein NlpI; Pro 99.0 2.7E-06 5.8E-11 75.4 27.8 214 60-282 40-266 (296)
82 COG3063 PilF Tfp pilus assembl 98.9 1.4E-06 3E-11 70.1 22.5 197 185-390 37-236 (250)
83 COG3063 PilF Tfp pilus assembl 98.9 1.3E-06 2.9E-11 70.2 22.1 198 48-280 37-235 (250)
84 PF12854 PPR_1: PPR repeat 98.9 2E-09 4.3E-14 59.7 4.0 33 391-423 2-34 (34)
85 KOG4340 Uncharacterized conser 98.9 2.3E-06 4.9E-11 71.4 23.4 316 41-386 5-335 (459)
86 PF04733 Coatomer_E: Coatomer 98.9 6.7E-07 1.5E-11 78.1 20.5 131 182-313 130-264 (290)
87 PF04733 Coatomer_E: Coatomer 98.9 1.2E-07 2.7E-12 82.6 15.8 156 262-428 112-268 (290)
88 KOG1156 N-terminal acetyltrans 98.9 8.2E-05 1.8E-09 69.0 35.0 388 20-423 50-509 (700)
89 KOG1174 Anaphase-promoting com 98.9 3.4E-05 7.4E-10 67.6 29.5 314 37-399 185-508 (564)
90 KOG0548 Molecular co-chaperone 98.8 6.8E-05 1.5E-09 68.0 32.0 396 19-438 10-468 (539)
91 KOG4162 Predicted calmodulin-b 98.8 0.00018 4E-09 68.2 36.2 410 24-444 240-768 (799)
92 KOG0985 Vesicle coat protein c 98.8 0.00022 4.7E-09 69.7 34.3 274 17-308 844-1189(1666)
93 cd05804 StaR_like StaR_like; a 98.7 2.8E-05 6.1E-10 71.4 27.9 261 20-313 52-335 (355)
94 PRK04841 transcriptional regul 98.7 0.0001 2.3E-09 76.8 33.9 237 186-424 494-759 (903)
95 KOG1128 Uncharacterized conser 98.7 1.2E-06 2.5E-11 81.9 16.8 222 178-424 393-615 (777)
96 KOG3617 WD40 and TPR repeat-co 98.7 5.8E-05 1.3E-09 71.9 27.6 240 10-279 725-994 (1416)
97 KOG0624 dsRNA-activated protei 98.7 0.00016 3.4E-09 62.0 31.1 215 46-282 38-253 (504)
98 KOG2376 Signal recognition par 98.7 0.00034 7.3E-09 64.4 35.8 51 371-423 468-518 (652)
99 KOG0624 dsRNA-activated protei 98.6 0.00029 6.2E-09 60.5 29.2 322 15-390 42-370 (504)
100 KOG1127 TPR repeat-containing 98.6 0.0003 6.5E-09 68.7 30.0 396 12-422 493-993 (1238)
101 PLN02789 farnesyltranstransfer 98.6 0.00015 3.3E-09 64.4 26.1 222 12-264 38-267 (320)
102 KOG3081 Vesicle coat complex C 98.5 0.00011 2.4E-09 60.7 22.0 180 238-428 94-274 (299)
103 KOG1070 rRNA processing protei 98.5 1.2E-05 2.6E-10 80.6 19.4 204 183-429 1458-1667(1710)
104 KOG1125 TPR repeat-containing 98.5 1.1E-05 2.5E-10 73.5 17.7 214 56-275 295-521 (579)
105 KOG3616 Selective LIM binding 98.5 5.2E-05 1.1E-09 71.3 21.9 111 190-310 739-849 (1636)
106 KOG0548 Molecular co-chaperone 98.5 0.00015 3.2E-09 65.9 23.9 351 54-429 10-425 (539)
107 PRK10370 formate-dependent nit 98.5 2.9E-05 6.2E-10 64.0 18.0 131 298-438 52-189 (198)
108 TIGR03302 OM_YfiO outer membra 98.5 1.6E-05 3.4E-10 68.3 17.1 62 366-427 171-234 (235)
109 TIGR03302 OM_YfiO outer membra 98.5 9.3E-05 2E-09 63.5 21.7 183 45-246 32-232 (235)
110 PRK10370 formate-dependent nit 98.4 2.1E-05 4.6E-10 64.8 16.4 125 24-152 52-179 (198)
111 KOG3616 Selective LIM binding 98.4 0.0004 8.8E-09 65.6 25.3 194 53-276 739-932 (1636)
112 PRK15359 type III secretion sy 98.4 2.4E-05 5.2E-10 60.9 14.9 94 49-144 27-120 (144)
113 TIGR00756 PPR pentatricopeptid 98.4 5.6E-07 1.2E-11 50.8 4.2 33 13-45 2-34 (35)
114 KOG0985 Vesicle coat protein c 98.4 0.003 6.6E-08 62.2 31.6 296 3-318 778-1166(1666)
115 COG5010 TadD Flp pilus assembl 98.4 0.00014 3E-09 60.1 19.2 158 50-242 70-227 (257)
116 PF13812 PPR_3: Pentatricopept 98.4 5.8E-07 1.3E-11 50.3 3.9 33 12-44 2-34 (34)
117 PRK15359 type III secretion sy 98.4 2.3E-05 5E-10 61.0 13.8 107 11-120 24-130 (144)
118 PRK04841 transcriptional regul 98.4 0.0035 7.5E-08 65.6 34.1 369 14-390 344-760 (903)
119 COG5010 TadD Flp pilus assembl 98.3 3.6E-05 7.8E-10 63.5 14.8 129 15-146 70-198 (257)
120 KOG1070 rRNA processing protei 98.3 0.00035 7.6E-09 70.6 24.2 150 99-280 1443-1592(1710)
121 PLN02789 farnesyltranstransfer 98.3 0.00022 4.7E-09 63.4 21.0 233 188-427 42-304 (320)
122 COG4783 Putative Zn-dependent 98.3 0.0011 2.3E-08 60.0 24.6 124 182-322 339-462 (484)
123 KOG3617 WD40 and TPR repeat-co 98.3 0.0038 8.2E-08 60.2 34.3 391 21-429 836-1363(1416)
124 TIGR00756 PPR pentatricopeptid 98.3 1.3E-06 2.8E-11 49.3 4.5 33 118-150 2-34 (35)
125 KOG3081 Vesicle coat complex C 98.3 0.00014 3E-09 60.2 17.3 222 191-433 16-244 (299)
126 PF13812 PPR_3: Pentatricopept 98.3 1.4E-06 3.1E-11 48.7 4.2 33 117-149 2-34 (34)
127 KOG1128 Uncharacterized conser 98.3 0.00077 1.7E-08 63.8 23.8 219 77-313 394-615 (777)
128 KOG1125 TPR repeat-containing 98.3 0.00035 7.5E-09 64.2 21.0 216 20-244 294-525 (579)
129 TIGR02552 LcrH_SycD type III s 98.3 6E-05 1.3E-09 58.3 14.6 116 33-153 5-120 (135)
130 PRK15179 Vi polysaccharide bio 98.3 0.0001 2.2E-09 72.3 18.9 149 6-158 81-229 (694)
131 PRK14720 transcript cleavage f 98.2 0.001 2.2E-08 66.3 25.1 150 220-407 119-268 (906)
132 PF10037 MRP-S27: Mitochondria 98.2 3.4E-05 7.3E-10 70.2 13.4 132 33-164 50-186 (429)
133 KOG3060 Uncharacterized conser 98.2 0.00059 1.3E-08 56.1 18.9 198 231-439 26-235 (289)
134 PRK14720 transcript cleavage f 98.2 0.0023 5E-08 63.9 26.6 168 11-247 31-199 (906)
135 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 9.8E-05 2.1E-09 66.9 15.6 126 12-143 170-295 (395)
136 KOG1914 mRNA cleavage and poly 98.2 0.0054 1.2E-07 56.3 36.7 404 8-423 17-499 (656)
137 PF08579 RPM2: Mitochondrial r 98.2 4.5E-05 9.8E-10 54.2 10.1 76 53-128 32-116 (120)
138 TIGR02552 LcrH_SycD type III s 98.1 0.00014 3.1E-09 56.2 14.0 110 7-120 12-122 (135)
139 KOG1127 TPR repeat-containing 98.1 0.0052 1.1E-07 60.5 26.2 357 61-429 473-883 (1238)
140 PF10037 MRP-S27: Mitochondria 98.1 5.2E-05 1.1E-09 69.0 12.5 124 6-129 61-186 (429)
141 PF08579 RPM2: Mitochondrial r 98.1 6.3E-05 1.4E-09 53.5 10.0 75 18-92 32-115 (120)
142 PRK15179 Vi polysaccharide bio 98.1 0.00099 2.2E-08 65.6 21.9 132 42-177 82-217 (694)
143 PF06239 ECSIT: Evolutionarily 98.1 9.9E-05 2.1E-09 59.4 12.1 75 95-169 66-156 (228)
144 PF09976 TPR_21: Tetratricopep 98.1 0.00037 8E-09 54.5 15.3 128 11-142 12-144 (145)
145 PF01535 PPR: PPR repeat; Int 98.1 4.4E-06 9.6E-11 45.5 3.1 30 13-42 2-31 (31)
146 PF09976 TPR_21: Tetratricopep 98.0 0.00025 5.4E-09 55.4 13.7 125 185-310 14-143 (145)
147 COG4783 Putative Zn-dependent 98.0 0.00081 1.8E-08 60.7 17.2 124 296-429 317-441 (484)
148 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.0003 6.5E-09 63.9 14.8 84 339-425 214-297 (395)
149 KOG2053 Mitochondrial inherita 98.0 0.0031 6.8E-08 61.2 22.0 64 370-433 199-264 (932)
150 PF01535 PPR: PPR repeat; Int 98.0 9.4E-06 2E-10 44.1 3.3 29 118-146 2-30 (31)
151 PF12895 Apc3: Anaphase-promot 97.9 3E-05 6.4E-10 54.1 5.8 82 338-421 2-83 (84)
152 KOG3060 Uncharacterized conser 97.9 0.00077 1.7E-08 55.5 14.2 165 266-439 26-197 (289)
153 PF07079 DUF1347: Protein of u 97.9 0.017 3.7E-07 52.0 36.2 410 16-438 51-541 (549)
154 KOG2053 Mitochondrial inherita 97.9 0.034 7.3E-07 54.5 38.0 223 21-252 19-259 (932)
155 cd00189 TPR Tetratricopeptide 97.8 0.00053 1.2E-08 48.8 11.3 91 16-108 5-95 (100)
156 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.0011 2.3E-08 49.8 13.3 97 14-110 5-105 (119)
157 PF05843 Suf: Suppressor of fo 97.8 0.00086 1.9E-08 58.8 14.1 144 12-160 2-149 (280)
158 PF06239 ECSIT: Evolutionarily 97.8 0.00058 1.3E-08 55.1 11.4 89 43-131 44-153 (228)
159 cd00189 TPR Tetratricopeptide 97.8 0.00068 1.5E-08 48.2 11.2 95 49-145 3-97 (100)
160 PF13414 TPR_11: TPR repeat; P 97.7 8E-05 1.7E-09 49.6 5.2 67 360-427 2-69 (69)
161 KOG0553 TPR repeat-containing 97.7 0.00026 5.7E-09 59.8 9.0 98 338-439 94-192 (304)
162 PF14559 TPR_19: Tetratricopep 97.7 0.00022 4.8E-09 47.3 6.9 57 372-429 2-58 (68)
163 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0033 7.1E-08 47.1 13.0 99 47-145 3-105 (119)
164 PRK02603 photosystem I assembl 97.6 0.0041 8.9E-08 50.2 14.3 96 48-144 37-148 (172)
165 PF13432 TPR_16: Tetratricopep 97.6 0.00014 3.1E-09 47.7 4.7 61 367-428 3-63 (65)
166 PLN03088 SGT1, suppressor of 97.6 0.0021 4.5E-08 58.6 13.7 90 19-110 10-99 (356)
167 PF14938 SNAP: Soluble NSF att 97.5 0.0068 1.5E-07 53.4 16.2 174 221-429 39-229 (282)
168 PRK10153 DNA-binding transcrip 97.5 0.0042 9.1E-08 59.3 15.7 72 358-431 417-488 (517)
169 PF12895 Apc3: Anaphase-promot 97.5 0.00016 3.4E-09 50.4 4.7 80 24-105 2-82 (84)
170 PLN03088 SGT1, suppressor of 97.5 0.0032 7E-08 57.4 14.4 103 53-159 9-111 (356)
171 CHL00033 ycf3 photosystem I as 97.5 0.0035 7.6E-08 50.4 13.0 96 46-142 35-139 (168)
172 PRK15363 pathogenicity island 97.5 0.0032 7E-08 48.5 11.5 94 50-145 39-132 (157)
173 PF14938 SNAP: Soluble NSF att 97.5 0.029 6.4E-07 49.4 19.5 63 220-282 158-226 (282)
174 PRK15363 pathogenicity island 97.5 0.015 3.3E-07 44.9 14.9 96 12-109 36-131 (157)
175 PRK10153 DNA-binding transcrip 97.4 0.031 6.7E-07 53.5 20.1 145 6-155 332-490 (517)
176 PF05843 Suf: Suppressor of fo 97.4 0.0087 1.9E-07 52.6 15.0 142 253-404 2-148 (280)
177 KOG1538 Uncharacterized conser 97.4 0.03 6.4E-07 52.8 18.4 78 221-309 751-828 (1081)
178 KOG1914 mRNA cleavage and poly 97.4 0.12 2.6E-06 47.9 30.8 370 43-425 17-464 (656)
179 PRK10866 outer membrane biogen 97.3 0.084 1.8E-06 45.2 21.1 197 188-422 37-238 (243)
180 COG4700 Uncharacterized protei 97.3 0.033 7.2E-07 43.9 14.7 158 17-176 62-225 (251)
181 PF12688 TPR_5: Tetratrico pep 97.3 0.025 5.5E-07 42.0 13.6 103 19-127 9-117 (120)
182 PF14559 TPR_19: Tetratricopep 97.2 0.0012 2.7E-08 43.6 6.2 23 51-73 30-52 (68)
183 PF03704 BTAD: Bacterial trans 97.2 0.0097 2.1E-07 46.6 12.1 70 83-153 64-138 (146)
184 PRK10866 outer membrane biogen 97.2 0.037 8.1E-07 47.3 16.3 28 401-428 180-207 (243)
185 PF13432 TPR_16: Tetratricopep 97.2 0.0038 8.3E-08 40.8 7.9 59 189-247 3-61 (65)
186 KOG1920 IkappaB kinase complex 97.2 0.36 7.8E-06 49.3 25.5 97 292-427 959-1057(1265)
187 PF03704 BTAD: Bacterial trans 97.2 0.012 2.5E-07 46.1 11.8 110 10-120 2-140 (146)
188 KOG1538 Uncharacterized conser 97.1 0.07 1.5E-06 50.4 17.8 26 78-103 553-578 (1081)
189 CHL00033 ycf3 photosystem I as 97.1 0.016 3.5E-07 46.6 12.6 62 83-144 37-100 (168)
190 KOG2796 Uncharacterized conser 97.1 0.034 7.4E-07 46.4 13.9 140 220-368 180-326 (366)
191 PRK02603 photosystem I assembl 97.1 0.022 4.8E-07 46.0 13.1 63 82-144 36-100 (172)
192 KOG0553 TPR repeat-containing 97.0 0.067 1.5E-06 45.7 15.1 101 56-160 91-191 (304)
193 PF04840 Vps16_C: Vps16, C-ter 97.0 0.26 5.6E-06 44.0 22.3 24 13-36 2-25 (319)
194 PF13371 TPR_9: Tetratricopept 97.0 0.0027 5.8E-08 42.7 5.7 62 369-431 3-64 (73)
195 COG4235 Cytochrome c biogenesi 96.9 0.089 1.9E-06 45.2 15.4 112 31-145 142-256 (287)
196 PF13525 YfiO: Outer membrane 96.9 0.13 2.7E-06 42.9 16.4 170 221-416 9-198 (203)
197 PF12688 TPR_5: Tetratrico pep 96.9 0.055 1.2E-06 40.2 12.3 104 52-161 7-116 (120)
198 PF13414 TPR_11: TPR repeat; P 96.8 0.0077 1.7E-07 39.9 7.0 62 81-143 3-65 (69)
199 PF12921 ATP13: Mitochondrial 96.8 0.035 7.6E-07 41.7 10.8 48 77-124 48-96 (126)
200 COG4700 Uncharacterized protei 96.8 0.13 2.9E-06 40.7 13.9 135 177-313 83-221 (251)
201 KOG2041 WD40 repeat protein [G 96.7 0.59 1.3E-05 45.0 28.6 222 8-246 689-952 (1189)
202 COG4235 Cytochrome c biogenesi 96.7 0.06 1.3E-06 46.2 13.0 37 277-313 148-184 (287)
203 KOG2796 Uncharacterized conser 96.7 0.094 2E-06 43.9 13.6 147 24-178 162-316 (366)
204 PF12921 ATP13: Mitochondrial 96.7 0.042 9E-07 41.3 10.7 86 10-95 1-102 (126)
205 PF13281 DUF4071: Domain of un 96.6 0.49 1.1E-05 42.8 19.3 27 220-246 308-334 (374)
206 KOG3941 Intermediate in Toll s 96.5 0.035 7.6E-07 46.8 10.1 89 78-166 64-173 (406)
207 PF13424 TPR_12: Tetratricopep 96.5 0.0053 1.2E-07 41.9 4.7 62 362-423 6-73 (78)
208 PRK10803 tol-pal system protei 96.5 0.1 2.2E-06 45.1 13.4 97 13-109 145-245 (263)
209 PF13371 TPR_9: Tetratricopept 96.4 0.027 5.8E-07 37.7 7.7 54 90-144 4-57 (73)
210 PRK10803 tol-pal system protei 96.4 0.062 1.3E-06 46.4 11.4 93 220-314 146-246 (263)
211 PF04840 Vps16_C: Vps16, C-ter 96.4 0.7 1.5E-05 41.3 25.2 84 220-311 180-263 (319)
212 PF07079 DUF1347: Protein of u 96.3 0.82 1.8E-05 41.8 33.2 372 23-404 91-533 (549)
213 PF13281 DUF4071: Domain of un 96.3 0.81 1.8E-05 41.4 19.3 80 183-262 141-227 (374)
214 KOG0550 Molecular chaperone (D 96.2 0.95 2.1E-05 40.8 18.9 49 55-104 58-106 (486)
215 KOG1130 Predicted G-alpha GTPa 96.0 0.32 6.9E-06 43.7 13.8 92 220-311 198-301 (639)
216 PF13424 TPR_12: Tetratricopep 95.9 0.028 6.2E-07 38.2 5.9 60 184-243 6-72 (78)
217 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.49 1.1E-05 43.6 15.0 96 78-179 72-176 (453)
218 KOG3941 Intermediate in Toll s 95.9 0.11 2.4E-06 44.0 9.7 89 44-132 65-174 (406)
219 PF04097 Nic96: Nup93/Nic96; 95.8 1.3 2.8E-05 43.9 18.5 63 12-76 113-182 (613)
220 PRK15331 chaperone protein Sic 95.7 0.66 1.4E-05 36.3 12.8 87 56-144 47-133 (165)
221 smart00299 CLH Clathrin heavy 95.7 0.7 1.5E-05 35.7 14.4 85 15-107 11-95 (140)
222 COG3898 Uncharacterized membra 95.7 1.5 3.3E-05 39.3 28.9 290 13-313 84-391 (531)
223 KOG2041 WD40 repeat protein [G 95.6 2.5 5.4E-05 41.0 25.9 202 78-310 689-903 (1189)
224 COG5107 RNA14 Pre-mRNA 3'-end 95.6 0.55 1.2E-05 42.8 13.4 144 12-160 398-544 (660)
225 PLN03098 LPA1 LOW PSII ACCUMUL 95.5 0.58 1.2E-05 43.1 13.8 64 10-75 74-141 (453)
226 KOG2114 Vacuolar assembly/sort 95.5 0.98 2.1E-05 44.6 15.8 143 190-352 375-517 (933)
227 PF09205 DUF1955: Domain of un 95.5 0.7 1.5E-05 34.5 11.5 68 359-427 84-151 (161)
228 KOG0550 Molecular chaperone (D 95.5 1.8 4E-05 39.1 20.7 89 225-313 257-349 (486)
229 PF13428 TPR_14: Tetratricopep 95.5 0.022 4.9E-07 33.6 3.3 27 364-390 4-30 (44)
230 PF10300 DUF3808: Protein of u 95.4 0.55 1.2E-05 44.7 14.2 119 298-423 246-374 (468)
231 PRK15331 chaperone protein Sic 95.4 0.54 1.2E-05 36.8 11.5 91 17-109 43-133 (165)
232 KOG1130 Predicted G-alpha GTPa 95.4 1.9 4.1E-05 39.0 16.0 86 339-424 249-343 (639)
233 KOG0543 FKBP-type peptidyl-pro 95.3 0.8 1.7E-05 41.2 13.5 122 20-143 217-353 (397)
234 PF08631 SPO22: Meiosis protei 95.2 2 4.3E-05 37.8 23.1 222 194-421 4-271 (278)
235 COG3898 Uncharacterized membra 95.2 2.3 4.9E-05 38.3 28.1 67 356-424 323-391 (531)
236 COG4649 Uncharacterized protei 95.0 1.3 2.9E-05 34.8 12.8 138 11-150 59-201 (221)
237 PF13428 TPR_14: Tetratricopep 94.8 0.092 2E-06 30.9 4.6 39 397-435 2-40 (44)
238 COG3629 DnrI DNA-binding trans 94.8 0.51 1.1E-05 40.8 10.7 77 83-160 155-236 (280)
239 PF13170 DUF4003: Protein of u 94.7 2.9 6.2E-05 37.0 18.7 130 97-258 78-223 (297)
240 PF09205 DUF1955: Domain of un 94.6 1.4 3.1E-05 32.9 13.4 123 22-148 13-152 (161)
241 COG1729 Uncharacterized protei 94.6 0.63 1.4E-05 39.6 10.5 49 265-313 154-206 (262)
242 COG1747 Uncharacterized N-term 94.5 4.2 9.1E-05 38.1 17.7 180 220-406 69-249 (711)
243 COG5107 RNA14 Pre-mRNA 3'-end 94.5 3.9 8.6E-05 37.6 30.7 144 253-407 398-546 (660)
244 KOG4555 TPR repeat-containing 94.5 1.5 3.2E-05 32.7 11.4 91 20-111 52-145 (175)
245 KOG0543 FKBP-type peptidyl-pro 94.4 1 2.2E-05 40.6 11.9 76 362-438 258-336 (397)
246 PF13170 DUF4003: Protein of u 94.4 3.5 7.5E-05 36.5 19.8 137 233-404 78-225 (297)
247 COG1729 Uncharacterized protei 94.2 0.57 1.2E-05 39.8 9.6 94 220-314 145-244 (262)
248 PF13431 TPR_17: Tetratricopep 94.2 0.062 1.3E-06 29.5 2.7 32 384-416 2-33 (34)
249 COG3118 Thioredoxin domain-con 94.2 1.6 3.5E-05 37.7 12.2 121 21-144 144-264 (304)
250 PF13929 mRNA_stabil: mRNA sta 94.2 3.2 7E-05 35.9 14.0 76 346-421 187-263 (292)
251 PF07035 Mic1: Colon cancer-as 94.0 2.5 5.3E-05 33.5 15.5 132 102-245 15-148 (167)
252 PF04053 Coatomer_WDAD: Coatom 94.0 2.6 5.6E-05 39.7 14.5 68 339-422 361-428 (443)
253 COG3629 DnrI DNA-binding trans 94.0 0.99 2.1E-05 39.1 10.7 81 47-128 154-239 (280)
254 PF13512 TPR_18: Tetratricopep 93.9 1.6 3.4E-05 33.4 10.5 77 190-266 17-96 (142)
255 PF04053 Coatomer_WDAD: Coatom 93.8 5 0.00011 37.9 15.9 135 183-352 295-429 (443)
256 KOG1585 Protein required for f 93.7 3.7 8E-05 34.5 16.3 210 42-274 23-249 (308)
257 PF10602 RPN7: 26S proteasome 93.6 0.93 2E-05 36.6 9.5 60 48-107 38-99 (177)
258 TIGR02561 HrpB1_HrpK type III 93.6 0.39 8.4E-06 36.7 6.7 47 339-390 24-73 (153)
259 PRK11906 transcriptional regul 93.5 3.7 8E-05 38.2 14.0 99 338-440 317-418 (458)
260 PF13176 TPR_7: Tetratricopept 93.3 0.13 2.7E-06 28.7 3.0 26 398-423 1-26 (36)
261 KOG4555 TPR repeat-containing 93.2 2.7 5.8E-05 31.4 11.5 91 55-146 52-145 (175)
262 PF13525 YfiO: Outer membrane 93.0 4.6 9.9E-05 33.6 20.9 174 186-381 8-198 (203)
263 PF04184 ST7: ST7 protein; In 92.9 4.8 0.0001 37.7 13.7 59 365-424 263-323 (539)
264 PF02259 FAT: FAT domain; Int 92.9 5.3 0.00012 36.5 14.9 200 189-424 4-212 (352)
265 PF00515 TPR_1: Tetratricopept 92.8 0.091 2E-06 28.7 1.9 29 398-426 3-31 (34)
266 PF13929 mRNA_stabil: mRNA sta 92.7 3.3 7.1E-05 35.8 11.8 116 26-141 143-263 (292)
267 PF07035 Mic1: Colon cancer-as 92.7 4.1 9E-05 32.3 13.3 103 31-143 14-116 (167)
268 KOG1920 IkappaB kinase complex 92.6 15 0.00033 38.4 23.7 84 220-312 942-1026(1265)
269 KOG1585 Protein required for f 92.4 5.9 0.00013 33.3 13.9 50 370-420 199-251 (308)
270 smart00299 CLH Clathrin heavy 92.3 4.1 8.9E-05 31.3 14.2 86 49-142 10-95 (140)
271 KOG4570 Uncharacterized conser 92.2 1.1 2.5E-05 38.8 8.4 103 40-144 58-163 (418)
272 PF04190 DUF410: Protein of un 92.2 7.2 0.00016 33.9 13.9 70 371-440 151-238 (260)
273 KOG1941 Acetylcholine receptor 92.1 5.3 0.00011 35.7 12.4 57 367-423 212-273 (518)
274 PF00637 Clathrin: Region in C 92.1 0.094 2E-06 40.8 1.9 84 223-311 13-96 (143)
275 PF13176 TPR_7: Tetratricopept 91.8 0.4 8.7E-06 26.6 3.8 24 14-37 2-25 (36)
276 PF11207 DUF2989: Protein of u 91.8 3.3 7.2E-05 33.7 10.2 77 58-136 119-198 (203)
277 PF08631 SPO22: Meiosis protei 91.7 8.8 0.00019 33.8 25.7 166 220-388 87-273 (278)
278 PF10300 DUF3808: Protein of u 91.6 13 0.00028 35.6 22.8 118 196-313 246-375 (468)
279 COG4649 Uncharacterized protei 91.4 6 0.00013 31.3 12.3 54 372-425 143-196 (221)
280 COG4105 ComL DNA uptake lipopr 91.3 8.4 0.00018 32.8 19.6 73 191-263 42-117 (254)
281 PF07719 TPR_2: Tetratricopept 91.2 0.17 3.7E-06 27.5 1.8 25 365-389 5-29 (34)
282 PF02284 COX5A: Cytochrome c o 91.0 1.5 3.4E-05 30.9 6.5 56 347-404 32-87 (108)
283 KOG2280 Vacuolar assembly/sort 90.9 18 0.00039 35.8 26.8 295 4-312 425-771 (829)
284 COG3118 Thioredoxin domain-con 90.9 10 0.00022 33.0 14.3 121 191-312 142-263 (304)
285 cd00923 Cyt_c_Oxidase_Va Cytoc 90.9 2 4.3E-05 30.1 6.9 56 347-404 29-84 (103)
286 cd00923 Cyt_c_Oxidase_Va Cytoc 90.7 4.3 9.4E-05 28.5 9.1 48 26-73 22-69 (103)
287 KOG2610 Uncharacterized conser 90.7 5.4 0.00012 35.2 11.0 155 262-422 113-273 (491)
288 PF04184 ST7: ST7 protein; In 90.5 15 0.00034 34.5 20.3 157 87-259 174-338 (539)
289 PF02284 COX5A: Cytochrome c o 89.9 1.3 2.8E-05 31.3 5.5 57 169-225 31-87 (108)
290 KOG2066 Vacuolar assembly/sort 89.9 23 0.00049 35.4 22.7 25 221-245 509-533 (846)
291 PF13512 TPR_18: Tetratricopep 89.5 8 0.00017 29.7 12.2 53 92-144 21-75 (142)
292 PRK11906 transcriptional regul 89.3 19 0.00041 33.7 18.8 131 12-144 252-400 (458)
293 PF07721 TPR_4: Tetratricopept 89.3 0.73 1.6E-05 23.3 3.1 24 398-421 3-26 (26)
294 COG2976 Uncharacterized protei 89.1 11 0.00023 30.7 10.7 105 318-428 82-191 (207)
295 PF00515 TPR_1: Tetratricopept 88.4 1.2 2.7E-05 24.0 3.9 29 362-390 2-30 (34)
296 KOG4570 Uncharacterized conser 88.3 4.7 0.0001 35.2 8.8 89 75-165 58-149 (418)
297 PF13374 TPR_10: Tetratricopep 88.2 0.67 1.5E-05 26.5 2.9 29 396-424 2-30 (42)
298 PF13431 TPR_17: Tetratricopep 88.1 1 2.2E-05 24.6 3.3 24 113-136 10-33 (34)
299 COG4785 NlpI Lipoprotein NlpI, 88.0 14 0.00031 30.6 12.5 62 81-143 99-160 (297)
300 PF10602 RPN7: 26S proteasome 87.8 12 0.00025 30.3 10.6 63 82-144 37-101 (177)
301 COG0457 NrfG FOG: TPR repeat [ 87.0 16 0.00035 30.3 25.2 199 220-428 62-268 (291)
302 PF13374 TPR_10: Tetratricopep 86.6 1.7 3.8E-05 24.7 4.1 27 12-38 3-29 (42)
303 KOG1258 mRNA processing protei 86.6 32 0.00069 33.2 33.6 388 11-410 45-489 (577)
304 PF13762 MNE1: Mitochondrial s 85.8 11 0.00025 29.0 8.9 82 48-129 41-128 (145)
305 PF07719 TPR_2: Tetratricopept 85.8 2.5 5.4E-05 22.7 4.2 32 397-428 2-33 (34)
306 PF09613 HrpB1_HrpK: Bacterial 85.2 16 0.00036 28.6 12.7 69 22-94 21-90 (160)
307 PF13181 TPR_8: Tetratricopept 85.2 0.52 1.1E-05 25.5 1.2 24 399-422 4-27 (34)
308 COG4105 ComL DNA uptake lipopr 85.1 23 0.0005 30.2 18.4 53 58-110 46-100 (254)
309 PF07163 Pex26: Pex26 protein; 85.0 16 0.00035 31.6 10.1 124 16-139 40-181 (309)
310 PF09613 HrpB1_HrpK: Bacterial 85.0 17 0.00037 28.6 13.5 18 92-109 55-72 (160)
311 PF00637 Clathrin: Region in C 84.5 0.33 7.2E-06 37.7 0.3 84 52-142 13-96 (143)
312 KOG4234 TPR repeat-containing 83.9 10 0.00023 30.8 8.2 100 338-438 108-210 (271)
313 PF10579 Rapsyn_N: Rapsyn N-te 83.6 4 8.8E-05 27.4 4.9 46 373-418 18-65 (80)
314 COG0457 NrfG FOG: TPR repeat [ 83.6 24 0.00052 29.2 25.9 54 193-246 177-231 (291)
315 PF11207 DUF2989: Protein of u 83.2 21 0.00047 29.2 9.8 78 193-272 117-198 (203)
316 COG4455 ImpE Protein of avirul 82.8 11 0.00024 31.2 8.0 75 15-90 5-81 (273)
317 KOG4234 TPR repeat-containing 82.5 4.4 9.5E-05 32.9 5.6 72 369-441 103-179 (271)
318 PF13174 TPR_6: Tetratricopept 82.5 0.71 1.5E-05 24.7 1.0 24 367-390 6-29 (33)
319 COG4455 ImpE Protein of avirul 82.0 13 0.00027 30.9 8.1 53 53-106 8-60 (273)
320 KOG3364 Membrane protein invol 81.7 7.2 0.00016 29.4 6.1 72 359-430 30-105 (149)
321 PF02259 FAT: FAT domain; Int 80.9 44 0.00096 30.4 25.5 64 182-245 145-212 (352)
322 smart00028 TPR Tetratricopepti 80.1 2.2 4.8E-05 21.9 2.6 26 399-424 4-29 (34)
323 KOG3364 Membrane protein invol 79.9 23 0.00049 26.9 8.1 70 319-390 29-100 (149)
324 PF13762 MNE1: Mitochondrial s 79.1 27 0.00059 27.0 10.3 91 72-162 28-126 (145)
325 KOG4648 Uncharacterized conser 78.7 9.8 0.00021 33.8 6.9 88 338-429 110-198 (536)
326 PF13174 TPR_6: Tetratricopept 78.5 5.7 0.00012 20.9 3.9 29 399-427 3-31 (33)
327 COG1747 Uncharacterized N-term 78.2 64 0.0014 30.8 18.0 185 250-446 64-259 (711)
328 PHA02875 ankyrin repeat protei 78.2 17 0.00037 34.2 9.4 75 22-104 10-88 (413)
329 PF04910 Tcf25: Transcriptiona 77.9 57 0.0012 30.0 17.4 134 180-313 37-221 (360)
330 PRK09687 putative lyase; Provi 77.8 49 0.0011 29.2 28.2 218 44-282 35-264 (280)
331 KOG4077 Cytochrome c oxidase, 77.6 18 0.00038 27.0 6.9 54 169-222 70-123 (149)
332 KOG0276 Vesicle coat complex C 77.1 42 0.00091 32.6 10.9 24 220-243 669-692 (794)
333 TIGR03504 FimV_Cterm FimV C-te 77.0 6 0.00013 23.2 3.7 23 17-39 5-27 (44)
334 COG2976 Uncharacterized protei 76.7 40 0.00086 27.6 14.7 128 12-146 55-189 (207)
335 PF13181 TPR_8: Tetratricopept 76.6 7.1 0.00015 20.8 3.9 28 363-390 3-30 (34)
336 TIGR03504 FimV_Cterm FimV C-te 76.4 6.7 0.00015 23.0 3.8 25 223-247 5-29 (44)
337 KOG2063 Vacuolar assembly/sort 76.0 1E+02 0.0023 32.0 14.5 26 14-39 507-532 (877)
338 KOG2114 Vacuolar assembly/sort 75.3 1E+02 0.0022 31.5 30.5 172 15-207 338-514 (933)
339 PF14853 Fis1_TPR_C: Fis1 C-te 75.1 3.5 7.7E-05 25.3 2.5 27 403-429 8-34 (53)
340 PRK15180 Vi polysaccharide bio 74.7 77 0.0017 29.9 22.7 53 57-110 334-386 (831)
341 COG3947 Response regulator con 74.6 28 0.00061 30.4 8.4 52 90-142 288-339 (361)
342 PF10579 Rapsyn_N: Rapsyn N-te 74.5 13 0.00029 25.0 5.2 46 229-274 18-65 (80)
343 KOG4077 Cytochrome c oxidase, 74.5 22 0.00048 26.5 6.7 50 354-404 77-126 (149)
344 PF11663 Toxin_YhaV: Toxin wit 74.0 3.3 7.1E-05 31.1 2.6 31 24-56 108-138 (140)
345 TIGR02561 HrpB1_HrpK type III 73.7 40 0.00087 26.2 12.2 18 92-109 55-72 (153)
346 COG5159 RPN6 26S proteasome re 73.3 63 0.0014 28.2 11.0 51 223-273 9-66 (421)
347 PF04097 Nic96: Nup93/Nic96; 73.1 1.1E+02 0.0023 30.8 13.7 66 188-253 116-188 (613)
348 cd08819 CARD_MDA5_2 Caspase ac 73.1 28 0.0006 24.1 6.6 65 65-135 21-85 (88)
349 PF07163 Pex26: Pex26 protein; 72.9 59 0.0013 28.3 9.8 87 16-104 88-181 (309)
350 KOG2908 26S proteasome regulat 72.6 72 0.0016 28.6 11.7 76 339-414 89-175 (380)
351 KOG1258 mRNA processing protei 72.3 1E+02 0.0022 30.1 34.7 376 45-432 44-477 (577)
352 COG3947 Response regulator con 72.1 13 0.00029 32.2 5.9 60 363-423 281-340 (361)
353 PF11848 DUF3368: Domain of un 71.7 19 0.00041 21.6 5.3 33 127-159 13-45 (48)
354 smart00777 Mad3_BUB1_I Mad3/BU 71.7 40 0.00088 25.3 8.2 63 356-421 61-124 (125)
355 PF10366 Vps39_1: Vacuolar sor 71.4 37 0.0008 24.8 8.1 26 220-245 42-67 (108)
356 KOG0276 Vesicle coat complex C 70.4 1.1E+02 0.0024 29.9 12.8 100 91-208 647-746 (794)
357 PF11848 DUF3368: Domain of un 70.1 19 0.00041 21.6 4.8 32 58-89 14-45 (48)
358 KOG0403 Neoplastic transformat 69.6 99 0.0021 29.0 15.9 73 364-437 512-585 (645)
359 PRK11619 lytic murein transgly 69.5 1.3E+02 0.0028 30.3 29.7 90 341-435 295-384 (644)
360 KOG1586 Protein required for f 69.4 69 0.0015 27.1 15.9 59 371-429 164-228 (288)
361 KOG2280 Vacuolar assembly/sort 68.8 1.4E+02 0.0029 30.2 28.5 99 40-141 426-532 (829)
362 KOG1941 Acetylcholine receptor 68.7 93 0.002 28.3 14.7 94 220-313 125-234 (518)
363 PRK10564 maltose regulon perip 67.2 13 0.00029 32.5 5.1 46 113-158 253-299 (303)
364 PF11846 DUF3366: Domain of un 67.0 19 0.00041 29.6 6.0 36 392-427 140-175 (193)
365 TIGR02508 type_III_yscG type I 66.6 45 0.00097 23.8 8.3 52 89-146 47-98 (115)
366 cd00280 TRFH Telomeric Repeat 66.4 50 0.0011 26.7 7.6 42 87-131 117-158 (200)
367 PHA02875 ankyrin repeat protei 66.2 41 0.00089 31.6 8.9 109 90-208 8-124 (413)
368 smart00386 HAT HAT (Half-A-TPR 66.0 14 0.0003 19.1 3.6 29 375-404 1-29 (33)
369 PF06552 TOM20_plant: Plant sp 65.3 72 0.0016 25.8 9.6 62 341-407 51-124 (186)
370 PF11846 DUF3366: Domain of un 64.5 43 0.00093 27.5 7.7 54 57-110 119-173 (193)
371 COG5187 RPN7 26S proteasome re 64.4 1E+02 0.0022 27.1 13.8 96 218-313 116-220 (412)
372 KOG4648 Uncharacterized conser 63.9 26 0.00055 31.3 6.2 86 56-143 107-192 (536)
373 KOG4279 Serine/threonine prote 63.7 1.6E+02 0.0035 29.8 11.8 126 32-162 184-334 (1226)
374 PF04762 IKI3: IKI3 family; I 63.6 2.1E+02 0.0045 30.5 14.4 45 371-421 882-926 (928)
375 PF10345 Cohesin_load: Cohesin 63.5 1.7E+02 0.0037 29.4 35.9 150 11-161 59-233 (608)
376 PF14689 SPOB_a: Sensor_kinase 63.4 23 0.00051 22.6 4.6 44 98-143 7-50 (62)
377 PF14689 SPOB_a: Sensor_kinase 62.9 12 0.00027 23.9 3.2 23 400-422 27-49 (62)
378 COG0735 Fur Fe2+/Zn2+ uptake r 62.6 63 0.0014 25.1 7.7 65 200-267 6-70 (145)
379 COG2909 MalT ATP-dependent tra 62.4 2E+02 0.0042 29.8 24.2 260 18-280 367-687 (894)
380 PF09670 Cas_Cas02710: CRISPR- 62.2 1.1E+02 0.0024 28.4 10.6 54 226-280 140-197 (379)
381 PF13934 ELYS: Nuclear pore co 62.2 98 0.0021 26.3 10.8 109 40-162 73-183 (226)
382 PF09454 Vps23_core: Vps23 cor 61.1 35 0.00075 22.1 5.0 56 357-413 4-59 (65)
383 PF08311 Mad3_BUB1_I: Mad3/BUB 61.1 69 0.0015 24.1 11.3 63 356-421 61-124 (126)
384 PF11663 Toxin_YhaV: Toxin wit 60.4 10 0.00023 28.5 2.9 28 95-124 109-136 (140)
385 PRK11619 lytic murein transgly 60.3 2E+02 0.0043 29.1 34.6 337 52-422 105-465 (644)
386 PF09454 Vps23_core: Vps23 cor 60.2 30 0.00066 22.4 4.6 52 7-59 4-55 (65)
387 PF12926 MOZART2: Mitotic-spin 59.4 56 0.0012 22.5 8.1 42 67-108 29-70 (88)
388 TIGR02508 type_III_yscG type I 59.0 64 0.0014 23.1 9.0 86 25-120 19-106 (115)
389 KOG0403 Neoplastic transformat 58.8 1.6E+02 0.0035 27.7 18.2 65 339-409 523-587 (645)
390 PF09670 Cas_Cas02710: CRISPR- 58.5 1.6E+02 0.0034 27.5 11.5 55 90-145 140-198 (379)
391 COG0735 Fur Fe2+/Zn2+ uptake r 58.5 64 0.0014 25.1 7.1 44 87-130 26-69 (145)
392 PF14561 TPR_20: Tetratricopep 58.4 37 0.0008 23.7 5.3 37 393-429 19-55 (90)
393 PRK15180 Vi polysaccharide bio 58.3 1.7E+02 0.0037 27.8 25.5 101 338-442 711-825 (831)
394 COG5159 RPN6 26S proteasome re 58.1 1.3E+02 0.0028 26.4 11.4 34 122-155 9-42 (421)
395 KOG2396 HAT (Half-A-TPR) repea 57.8 1.8E+02 0.0039 27.9 22.1 250 26-280 297-558 (568)
396 PRK10564 maltose regulon perip 55.7 33 0.00071 30.2 5.5 39 220-258 260-298 (303)
397 KOG1586 Protein required for f 55.3 1.3E+02 0.0029 25.6 15.9 63 290-352 159-225 (288)
398 PF10475 DUF2450: Protein of u 55.1 1.5E+02 0.0033 26.3 10.3 114 86-207 103-221 (291)
399 KOG4567 GTPase-activating prot 54.7 88 0.0019 27.7 7.7 57 101-162 263-319 (370)
400 PF09477 Type_III_YscG: Bacter 54.6 81 0.0017 22.9 9.2 79 26-111 21-99 (116)
401 PF06552 TOM20_plant: Plant sp 54.0 1.2E+02 0.0025 24.6 10.3 41 133-178 97-137 (186)
402 PF10345 Cohesin_load: Cohesin 54.0 2.5E+02 0.0053 28.3 32.5 180 28-208 38-250 (608)
403 PRK08691 DNA polymerase III su 53.8 1.5E+02 0.0032 30.1 10.2 35 399-434 249-283 (709)
404 KOG2063 Vacuolar assembly/sort 53.0 1.2E+02 0.0027 31.4 9.7 36 373-408 603-638 (877)
405 KOG4507 Uncharacterized conser 52.5 1.2E+02 0.0026 29.6 8.9 135 9-145 569-705 (886)
406 PF07575 Nucleopor_Nup85: Nup8 51.7 41 0.00088 33.3 6.3 63 44-108 403-465 (566)
407 PHA03100 ankyrin repeat protei 50.0 2.2E+02 0.0047 27.4 11.0 15 408-422 428-442 (480)
408 COG2909 MalT ATP-dependent tra 49.9 3.2E+02 0.0069 28.4 25.5 226 192-423 424-686 (894)
409 PF04910 Tcf25: Transcriptiona 49.9 2.1E+02 0.0046 26.4 10.4 128 280-424 35-167 (360)
410 PF12926 MOZART2: Mitotic-spin 49.9 84 0.0018 21.7 7.8 42 102-143 29-70 (88)
411 KOG0991 Replication factor C, 49.5 1.7E+02 0.0036 25.0 11.0 38 358-396 236-273 (333)
412 PF10366 Vps39_1: Vacuolar sor 49.1 95 0.0021 22.6 6.3 27 118-144 41-67 (108)
413 COG4785 NlpI Lipoprotein NlpI, 48.9 1.6E+02 0.0035 24.7 16.9 69 42-111 94-163 (297)
414 PF02184 HAT: HAT (Half-A-TPR) 48.9 43 0.00093 18.1 3.3 26 376-403 2-27 (32)
415 PF11768 DUF3312: Protein of u 48.6 1.8E+02 0.004 28.2 9.5 61 186-246 411-473 (545)
416 PF00244 14-3-3: 14-3-3 protei 47.9 1.8E+02 0.0039 24.9 12.3 58 222-279 6-64 (236)
417 COG5108 RPO41 Mitochondrial DN 47.6 1.6E+02 0.0034 29.3 8.9 75 16-93 33-115 (1117)
418 PF06957 COPI_C: Coatomer (COP 47.4 72 0.0016 29.9 6.7 182 189-391 124-330 (422)
419 cd07153 Fur_like Ferric uptake 47.1 44 0.00096 24.5 4.6 45 17-61 6-50 (116)
420 PF12862 Apc5: Anaphase-promot 46.9 75 0.0016 22.3 5.5 53 372-424 9-69 (94)
421 PRK14962 DNA polymerase III su 46.4 2.8E+02 0.0061 26.8 15.6 60 339-399 257-322 (472)
422 COG4941 Predicted RNA polymera 46.0 2.3E+02 0.005 25.6 10.0 125 297-425 268-394 (415)
423 PF10255 Paf67: RNA polymerase 45.7 1.5E+02 0.0033 27.7 8.4 60 185-244 124-191 (404)
424 PF11838 ERAP1_C: ERAP1-like C 45.5 2.3E+02 0.0049 25.4 13.8 60 47-109 170-229 (324)
425 PF09986 DUF2225: Uncharacteri 45.4 1.8E+02 0.004 24.4 8.4 75 363-437 120-208 (214)
426 PRK11639 zinc uptake transcrip 45.3 1.3E+02 0.0028 24.1 7.2 67 200-269 11-77 (169)
427 PRK09857 putative transposase; 45.3 2E+02 0.0043 25.6 8.9 66 84-150 209-274 (292)
428 PF03745 DUF309: Domain of unk 45.1 81 0.0018 20.2 5.1 15 24-38 12-26 (62)
429 PRK13342 recombination factor 44.7 2.8E+02 0.006 26.2 17.2 42 118-159 229-273 (413)
430 PF13934 ELYS: Nuclear pore co 44.7 2E+02 0.0042 24.5 10.9 70 189-263 114-183 (226)
431 cd07153 Fur_like Ferric uptake 44.6 74 0.0016 23.3 5.5 48 222-269 5-52 (116)
432 PRK11639 zinc uptake transcrip 44.2 1.7E+02 0.0036 23.5 7.6 37 94-130 38-74 (169)
433 KOG2034 Vacuolar sorting prote 44.1 3.9E+02 0.0085 27.8 24.2 165 20-208 367-555 (911)
434 TIGR03581 EF_0839 conserved hy 44.1 71 0.0015 26.5 5.3 82 26-108 136-235 (236)
435 PF11817 Foie-gras_1: Foie gra 44.0 1E+02 0.0022 26.6 6.8 58 365-422 182-244 (247)
436 PF11817 Foie-gras_1: Foie gra 43.9 1.8E+02 0.0038 25.1 8.3 58 221-278 182-244 (247)
437 KOG2908 26S proteasome regulat 43.2 2.5E+02 0.0055 25.4 9.7 92 84-175 78-181 (380)
438 PRK13342 recombination factor 42.3 3E+02 0.0066 26.0 16.9 70 339-409 244-318 (413)
439 PF07575 Nucleopor_Nup85: Nup8 41.2 48 0.001 32.8 5.0 28 8-36 146-173 (566)
440 PRK07003 DNA polymerase III su 41.2 2.7E+02 0.0059 28.8 9.8 15 338-352 211-225 (830)
441 PF01475 FUR: Ferric uptake re 40.9 46 0.00099 24.7 3.8 44 17-60 13-56 (120)
442 PRK14951 DNA polymerase III su 40.8 2.8E+02 0.0061 27.9 9.9 24 409-432 263-286 (618)
443 PF12862 Apc5: Anaphase-promot 40.6 1.3E+02 0.0028 21.1 6.6 20 370-389 50-69 (94)
444 PF02847 MA3: MA3 domain; Int 40.0 1.4E+02 0.0031 21.6 6.7 61 15-77 6-68 (113)
445 PF15297 CKAP2_C: Cytoskeleton 39.9 2.9E+02 0.0064 25.1 9.2 64 341-407 119-186 (353)
446 PF11123 DNA_Packaging_2: DNA 39.8 98 0.0021 20.5 4.4 50 198-258 12-61 (82)
447 PHA03100 ankyrin repeat protei 39.3 3.6E+02 0.0077 25.9 13.0 42 167-208 155-198 (480)
448 PF00627 UBA: UBA/TS-N domain; 39.3 58 0.0013 18.0 3.2 31 384-418 6-36 (37)
449 cd00280 TRFH Telomeric Repeat 39.0 2.1E+02 0.0046 23.3 10.7 67 341-411 85-158 (200)
450 PF01475 FUR: Ferric uptake re 39.0 67 0.0015 23.8 4.5 49 220-268 10-58 (120)
451 PRK13341 recombination factor 38.8 4.6E+02 0.01 27.1 15.3 153 247-413 192-350 (725)
452 PF03745 DUF309: Domain of unk 38.5 1.1E+02 0.0023 19.6 5.6 49 56-104 9-62 (62)
453 KOG4279 Serine/threonine prote 38.3 4.5E+02 0.0099 26.9 14.0 116 167-282 182-317 (1226)
454 PRK09857 putative transposase; 38.3 2.9E+02 0.0063 24.6 9.3 63 119-182 209-274 (292)
455 PF02847 MA3: MA3 domain; Int 38.1 1.1E+02 0.0024 22.2 5.5 61 187-248 6-68 (113)
456 KOG1550 Extracellular protein 38.1 4.1E+02 0.009 26.3 24.0 91 62-157 228-333 (552)
457 KOG4642 Chaperone-dependent E3 38.0 2.6E+02 0.0057 24.0 10.1 85 227-313 20-106 (284)
458 KOG4507 Uncharacterized conser 37.9 1.3E+02 0.0029 29.3 6.9 86 196-282 620-706 (886)
459 COG4976 Predicted methyltransf 37.4 46 0.001 28.0 3.4 54 373-427 7-60 (287)
460 KOG2659 LisH motif-containing 37.2 2.6E+02 0.0056 23.7 9.2 100 42-143 22-130 (228)
461 KOG0890 Protein kinase of the 37.1 7.8E+02 0.017 29.3 23.8 116 17-141 1389-1508(2382)
462 KOG2422 Uncharacterized conser 36.8 4.2E+02 0.0092 26.1 13.8 106 319-427 338-450 (665)
463 cd08819 CARD_MDA5_2 Caspase ac 36.3 1.5E+02 0.0032 20.6 7.5 65 168-237 22-86 (88)
464 PF11768 DUF3312: Protein of u 35.8 4.3E+02 0.0093 25.8 10.2 61 15-75 412-473 (545)
465 COG5108 RPO41 Mitochondrial DN 35.8 2.5E+02 0.0054 28.1 8.3 75 188-262 33-113 (1117)
466 KOG1498 26S proteasome regulat 35.3 3.7E+02 0.008 25.0 14.2 79 338-424 144-240 (439)
467 KOG2062 26S proteasome regulat 35.0 5.1E+02 0.011 26.5 20.8 135 4-145 88-239 (929)
468 KOG3636 Uncharacterized conser 34.9 4E+02 0.0086 25.2 14.8 30 178-207 178-207 (669)
469 PF04090 RNA_pol_I_TF: RNA pol 34.6 2.7E+02 0.0058 23.1 7.4 48 48-96 43-91 (199)
470 PRK14956 DNA polymerase III su 34.5 4.4E+02 0.0095 25.5 10.3 101 28-152 183-284 (484)
471 KOG4567 GTPase-activating prot 34.4 87 0.0019 27.7 4.7 44 345-389 263-306 (370)
472 PRK09462 fur ferric uptake reg 34.1 2.2E+02 0.0048 22.1 7.1 59 354-413 10-69 (148)
473 KOG2297 Predicted translation 34.0 3.4E+02 0.0075 24.2 12.0 20 219-238 323-342 (412)
474 PF14853 Fis1_TPR_C: Fis1 C-te 33.9 1.2E+02 0.0025 18.7 5.2 35 223-259 7-41 (53)
475 PF02607 B12-binding_2: B12 bi 33.3 1.5E+02 0.0032 19.8 5.2 36 339-375 15-50 (79)
476 KOG0508 Ankyrin repeat protein 33.0 52 0.0011 30.8 3.4 284 53-369 88-384 (615)
477 PRK06645 DNA polymerase III su 32.9 4.7E+02 0.01 25.6 9.9 20 410-429 271-290 (507)
478 PF09868 DUF2095: Uncharacteri 32.8 1.9E+02 0.0041 21.2 5.4 31 87-118 67-97 (128)
479 PF10255 Paf67: RNA polymerase 32.8 1.1E+02 0.0023 28.7 5.4 58 256-313 126-192 (404)
480 PF09868 DUF2095: Uncharacteri 32.7 2E+02 0.0043 21.1 5.5 39 52-91 67-105 (128)
481 COG2178 Predicted RNA-binding 32.6 2.8E+02 0.0061 22.8 9.9 16 374-389 134-149 (204)
482 KOG0890 Protein kinase of the 32.3 9.4E+02 0.02 28.7 23.4 113 20-140 1429-1542(2382)
483 KOG0687 26S proteasome regulat 31.8 3.9E+02 0.0085 24.2 11.0 120 25-146 36-174 (393)
484 PF07678 A2M_comp: A-macroglob 31.5 1.2E+02 0.0026 26.1 5.4 80 341-423 115-219 (246)
485 PRK09462 fur ferric uptake reg 31.4 2.5E+02 0.0054 21.8 7.7 35 96-130 32-66 (148)
486 COG0819 TenA Putative transcri 31.4 3.2E+02 0.007 23.1 9.0 22 78-99 106-127 (218)
487 COG5187 RPN7 26S proteasome re 30.1 3.9E+02 0.0085 23.7 12.6 100 287-389 117-220 (412)
488 KOG2659 LisH motif-containing 30.0 3.4E+02 0.0075 23.0 9.4 98 180-277 23-128 (228)
489 PRK09687 putative lyase; Provi 29.2 4E+02 0.0087 23.5 27.9 218 79-313 35-262 (280)
490 KOG4642 Chaperone-dependent E3 28.9 3E+02 0.0065 23.7 6.8 79 339-422 24-104 (284)
491 PF04090 RNA_pol_I_TF: RNA pol 28.4 3.4E+02 0.0075 22.5 10.1 49 12-61 42-91 (199)
492 PRK14956 DNA polymerase III su 28.4 5.6E+02 0.012 24.9 12.4 87 74-184 195-284 (484)
493 COG4259 Uncharacterized protei 28.2 2.3E+02 0.0049 20.3 6.3 49 376-424 52-100 (121)
494 PRK14958 DNA polymerase III su 28.2 5.8E+02 0.013 25.0 12.3 92 63-157 182-286 (509)
495 PRK14962 DNA polymerase III su 26.9 5.9E+02 0.013 24.7 13.5 71 82-153 245-321 (472)
496 KOG0989 Replication factor C, 26.8 4.7E+02 0.01 23.5 9.4 91 347-439 196-298 (346)
497 COG4003 Uncharacterized protei 26.5 2.1E+02 0.0046 19.4 5.0 26 86-111 36-61 (98)
498 KOG4521 Nuclear pore complex, 26.4 8.8E+02 0.019 26.5 15.8 18 191-208 928-945 (1480)
499 cd02680 MIT_calpain7_2 MIT: do 26.3 1.1E+02 0.0025 20.5 3.3 32 268-313 3-34 (75)
500 KOG0545 Aryl-hydrocarbon recep 26.2 4.3E+02 0.0093 22.9 11.4 66 367-433 236-301 (329)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.5e-62 Score=487.51 Aligned_cols=441 Identities=17% Similarity=0.262 Sum_probs=396.1
Q ss_pred CCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 012365 9 PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88 (465)
Q Consensus 9 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 88 (465)
||..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHhhCChhH
Q 012365 89 SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQ--ANVKPDSQTFSYLIHNCSNEED 166 (465)
Q Consensus 89 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~~~ 166 (465)
.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999986 6789999999999999876654
Q ss_pred ---HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCC-CCChHHHHHHHHHHHHcCCChhHHHHHHHH
Q 012365 167 ---IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIP-VKSRSEVKSALVSALASHGRTSDAIIVYEE 242 (465)
Q Consensus 167 ---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 242 (465)
+.++++.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|... ..++..+|+.++.+|++.|++++|.++|++
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6679999999999999999999999999999999999999986543 455666899999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCcc--chhhHhhHhhhcCChhHHHHHHHHHHH-cccchh
Q 012365 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD--GCCRLILHCVRFKQLSSATDLLKQLKD-KFKDDE 319 (465)
Q Consensus 243 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~ 319 (465)
|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.+..|+ .|+.++.+|++.|++++|.++|++|.. +..|+.
T Consensus 675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999988776665 678999999999999999999999987 467888
Q ss_pred HHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHh----hh-------------------h
Q 012365 320 MAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVN----AR-------------------D 376 (465)
Q Consensus 320 ~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~g-------------------~ 376 (465)
.+++.++..+.. .|++++|.+++++|. +.|+.||..+|++++..|.+ ++ .
T Consensus 755 ~Ty~sLL~a~~k------~G~le~A~~l~~~M~-k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w 827 (1060)
T PLN03218 755 ITYSILLVASER------KDDADVGLDLLSQAK-EDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKW 827 (1060)
T ss_pred HHHHHHHHHHHH------CCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccch
Confidence 888888865443 399999999999999 99999999999999876432 11 2
Q ss_pred hhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCC-----ChhHHHHHHHh----hccccchhh
Q 012365 377 LKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDP-----HVRFVIQACKQ----TYTIPSLQK 447 (465)
Q Consensus 377 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-----~~~~~l~~~~~----~~~~~~~~~ 447 (465)
.+.|..+|++|.+.|+.||..||+.++.++++.+..+.+..++++|...+. ++++++.+|+. +....++|.
T Consensus 828 ~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~ 907 (1060)
T PLN03218 828 TSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHH
Confidence 367999999999999999999999999888899999999999998875432 57899998863 466668999
Q ss_pred hcCCCCCcc
Q 012365 448 ERGFEKDRD 456 (465)
Q Consensus 448 ~~~~~pd~~ 456 (465)
+.|+.|+..
T Consensus 908 ~~Gi~p~~~ 916 (1060)
T PLN03218 908 SLGVVPSVS 916 (1060)
T ss_pred HcCCCCCcc
Confidence 999999975
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9.9e-63 Score=488.71 Aligned_cols=443 Identities=19% Similarity=0.263 Sum_probs=368.1
Q ss_pred CCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 012365 6 EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGEL-VPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETF 84 (465)
Q Consensus 6 ~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 84 (465)
.-.++...|..++..+++.|++++|+++|++|.+.|+ .|+..+++.++.+|.+.|.+++|..+++.|.. ||..+|
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Ty 440 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTF 440 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHH
Confidence 3456778888888899999999999999999988885 45677777888888888888888888888764 888888
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCCh
Q 012365 85 RSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE 164 (465)
Q Consensus 85 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 164 (465)
+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888887765
Q ss_pred hH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCCChHHHHHHHHHHHHcCCChhHHHH
Q 012365 165 ED---IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEI---PVKSRSEVKSALVSALASHGRTSDAII 238 (465)
Q Consensus 165 ~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~ 238 (465)
|+ +.++++.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. ...++..+|+++|.+|++.|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 54 456788888888888888888888888888888888888888642 345556678888888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCcc--chhhHhhHhhhcCChhHHHHHHHHHHHc-c
Q 012365 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD--GCCRLILHCVRFKQLSSATDLLKQLKDK-F 315 (465)
Q Consensus 239 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~ 315 (465)
+|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.|+ +|+.++.+|++.|++++|.++|++|.+. .
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 888888888888888888888888888888888888888888887776 5678888888888888888888888884 4
Q ss_pred cchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCC
Q 012365 316 KDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYN 395 (465)
Q Consensus 316 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~ 395 (465)
.|+..+++.++..+... |++++|.++|++|. ..|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||
T Consensus 681 ~pd~~tynsLI~ay~k~------G~~eeA~~lf~eM~-~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNA------KNWKKALELYEDIK-SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred CCCHHHHHHHHHHHHhC------CCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 56666777777655444 88888888888888 788888888888888888888888888888888888888888
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHhccCCCCCC-----hhHHHHHHHh-----------------------------hcc
Q 012365 396 VLSYLWMYKAFLASGNRKSASKLLSKMPKDDPH-----VRFVIQACKQ-----------------------------TYT 441 (465)
Q Consensus 396 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-----~~~~l~~~~~-----------------------------~~~ 441 (465)
..+|+.++.+|++.|++++|.+++++|.+.++. ++++++.|.. +..
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~ 833 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALM 833 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHH
Confidence 888888888888888888888888888877663 4566655432 223
Q ss_pred ccchhhhcCCCCCcchhh
Q 012365 442 IPSLQKERGFEKDRDTLL 459 (465)
Q Consensus 442 ~~~~~~~~~~~pd~~t~~ 459 (465)
...+|++.|+.||..||.
T Consensus 834 lf~eM~~~Gi~Pd~~T~~ 851 (1060)
T PLN03218 834 VYRETISAGTLPTMEVLS 851 (1060)
T ss_pred HHHHHHHCCCCCCHHHHH
Confidence 347889999999999986
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.3e-63 Score=497.55 Aligned_cols=434 Identities=17% Similarity=0.210 Sum_probs=405.1
Q ss_pred CCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 012365 8 TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSM 87 (465)
Q Consensus 8 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 87 (465)
.||..+||++|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++..|.+.|+.||..+||+|
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~L 228 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhH-
Q 012365 88 ISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED- 166 (465)
Q Consensus 88 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~- 166 (465)
|.+|++.|+++.|.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.++
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~ 304 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Confidence 999999999999999999998 489999999999999999999999999999999999999999999999887655
Q ss_pred --HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 012365 167 --IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244 (465)
Q Consensus 167 --~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 244 (465)
+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. + +..+||.+|.+|++.|++++|+++|++|.
T Consensus 305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~-d~~s~n~li~~~~~~g~~~~A~~lf~~M~ 381 (857)
T PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET--K-DAVSWTAMISGYEKNGLPDKALETYALME 381 (857)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CeeeHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 567999999999999999999999999999999999999997643 2 33469999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCcc--chhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHH
Q 012365 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD--GCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAM 322 (465)
Q Consensus 245 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 322 (465)
+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|..++ .++.++..|++.|++++|.++|++|.+ ++..+|
T Consensus 382 ~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~ 458 (857)
T PLN03077 382 QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISW 458 (857)
T ss_pred HhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeH
Confidence 999999999999999999999999999999999999987765 568899999999999999999999987 788899
Q ss_pred HHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHH
Q 012365 323 EYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWM 402 (465)
Q Consensus 323 ~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 402 (465)
++++..+... |+.++|+.+|++|. . ++.||..||++++.+|++.|+++.+.+++..+.+.|+.+|..++++|
T Consensus 459 ~~mi~~~~~~------g~~~eA~~lf~~m~-~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naL 530 (857)
T PLN03077 459 TSIIAGLRLN------NRCFEALIFFRQML-L-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNAL 530 (857)
T ss_pred HHHHHHHHHC------CCHHHHHHHHHHHH-h-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHH
Confidence 9998876554 99999999999998 4 69999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhhHHHHHhccCCCCCChhHHHHHHHhh------ccccchhhhcCCCCCcchhh
Q 012365 403 YKAFLASGNRKSASKLLSKMPKDDPHVRFVIQACKQT------YTIPSLQKERGFEKDRDTLL 459 (465)
Q Consensus 403 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~pd~~t~~ 459 (465)
+++|+++|++++|.++|+++...-.+|++++.+|... ....++|++.|+.||.+||.
T Consensus 531 i~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~ 593 (857)
T PLN03077 531 LDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH
Confidence 9999999999999999999944444799999998775 44447888999999999997
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8e-61 Score=483.50 Aligned_cols=413 Identities=19% Similarity=0.245 Sum_probs=385.7
Q ss_pred CCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 012365 8 TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSM 87 (465)
Q Consensus 8 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 87 (465)
.||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.+++..|.+.|+.||..+||.|
T Consensus 250 ~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~L 329 (857)
T PLN03077 250 RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSL 329 (857)
T ss_pred CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhH-
Q 012365 88 ISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED- 166 (465)
Q Consensus 88 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~- 166 (465)
|.+|++.|++++|.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.++
T Consensus 330 i~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~ 405 (857)
T PLN03077 330 IQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL 405 (857)
T ss_pred HHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchH
Confidence 999999999999999999997 589999999999999999999999999999999999999999999999987765
Q ss_pred --HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 012365 167 --IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244 (465)
Q Consensus 167 --~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 244 (465)
+.++++.+.+.|+.|+..+|+.|+++|++.|++++|.++|+++.. ++ ..+|+.+|.+|++.|+.++|+++|++|.
T Consensus 406 ~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d-~vs~~~mi~~~~~~g~~~eA~~lf~~m~ 482 (857)
T PLN03077 406 DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE--KD-VISWTSIIAGLRLNNRCFEALIFFRQML 482 (857)
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC--CC-eeeHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556899999999999999999999999999999999999996543 33 3469999999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCcc--chhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHH
Q 012365 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD--GCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAM 322 (465)
Q Consensus 245 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 322 (465)
. ++.||..||+.++.+|++.|.++.+.+++..+.+.|..++ .++.++..|+++|++++|.++|+.+ .++..+|
T Consensus 483 ~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~ 557 (857)
T PLN03077 483 L-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSW 557 (857)
T ss_pred h-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhH
Confidence 6 6899999999999999999999999999999999987766 4578999999999999999999998 3899999
Q ss_pred HHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHH-HcCCCCChhHHHH
Q 012365 323 EYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYE-NAGLPYNVLSYLW 401 (465)
Q Consensus 323 ~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~ 401 (465)
++++..+... |+.++|+++|++|. +.|+.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|+.
T Consensus 558 n~lI~~~~~~------G~~~~A~~lf~~M~-~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~ 630 (857)
T PLN03077 558 NILLTGYVAH------GKGSMAVELFNRMV-ESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC 630 (857)
T ss_pred HHHHHHHHHc------CCHHHHHHHHHHHH-HcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 9999876554 99999999999999 99999999999999999999999999999999999 6899999999999
Q ss_pred HHHHHHhcCChhhHHHHHhccC-CCCC-ChhHHHHHHHhh
Q 012365 402 MYKAFLASGNRKSASKLLSKMP-KDDP-HVRFVIQACKQT 439 (465)
Q Consensus 402 l~~~~~~~g~~~~A~~~~~~m~-~~~~-~~~~~l~~~~~~ 439 (465)
++++|++.|++++|.+++++|. +.++ .|+++|++|...
T Consensus 631 lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~ 670 (857)
T PLN03077 631 VVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIH 670 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999995 4444 589999999763
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.3e-60 Score=469.18 Aligned_cols=416 Identities=16% Similarity=0.244 Sum_probs=387.8
Q ss_pred CCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 012365 7 ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGE-LVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85 (465)
Q Consensus 7 ~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 85 (465)
..++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 44566799999999999999999999999998764 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChh
Q 012365 86 SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE 165 (465)
Q Consensus 86 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 165 (465)
.++.+|++.|+++.|.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|++.+
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 99999999999999999999997 48999999999999999999999999999999999999999999999988766
Q ss_pred H---HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHH
Q 012365 166 D---IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242 (465)
Q Consensus 166 ~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 242 (465)
. ..+++..+.+.|+.||..+|++|+++|++.|++++|.++|+++. .+ +..+||.+|.+|++.|++++|+++|++
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~-~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP--EK-TTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC--CC-ChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5 45688889999999999999999999999999999999999653 33 444699999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCcc--chhhHhhHhhhcCChhHHHHHHHHHHHcccchhH
Q 012365 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD--GCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEM 320 (465)
Q Consensus 243 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 320 (465)
|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|..++ .++.++..|+++|++++|.++|++|.+ |+..
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~ 392 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLI 392 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCee
Confidence 99999999999999999999999999999999999999887665 678999999999999999999999987 8899
Q ss_pred HHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHH-cCCCCChhHH
Q 012365 321 AMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYEN-AGLPYNVLSY 399 (465)
Q Consensus 321 ~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~ 399 (465)
+|++++..+... |+.++|+++|++|. ..|+.||..||++++.+|++.|++++|.++|+.|.+ .|+.|+..+|
T Consensus 393 t~n~lI~~y~~~------G~~~~A~~lf~~M~-~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y 465 (697)
T PLN03081 393 SWNALIAGYGNH------GRGTKAVEMFERMI-AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY 465 (697)
T ss_pred eHHHHHHHHHHc------CCHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccch
Confidence 999999876554 99999999999999 999999999999999999999999999999999986 6999999999
Q ss_pred HHHHHHHHhcCChhhHHHHHhccCCCC--CChhHHHHHHHhh
Q 012365 400 LWMYKAFLASGNRKSASKLLSKMPKDD--PHVRFVIQACKQT 439 (465)
Q Consensus 400 ~~l~~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~l~~~~~~ 439 (465)
+.++++|++.|++++|.+++++|.... .+|+++|++|...
T Consensus 466 ~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~ 507 (697)
T PLN03081 466 ACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIH 507 (697)
T ss_pred HhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999997432 2589999999875
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.5e-56 Score=438.78 Aligned_cols=433 Identities=12% Similarity=0.115 Sum_probs=391.8
Q ss_pred cccCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 012365 3 AKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSE 82 (465)
Q Consensus 3 ~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 82 (465)
...++.||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.++.+|++.|+++.|.++|++|.+ ||..
T Consensus 115 ~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~ 190 (697)
T PLN03081 115 AGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLA 190 (697)
T ss_pred hcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCee
Confidence 344688999999999999999999999999999999999999999999999999999999999999999964 7999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhC
Q 012365 83 TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS 162 (465)
Q Consensus 83 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 162 (465)
+||.+|.+|++.|++++|.++|++|...|+.|+..+|+.++.++++.|..+.+.+++..+.+.|+.||..+|+.++.+|+
T Consensus 191 t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~ 270 (697)
T PLN03081 191 SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYS 270 (697)
T ss_pred eHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ChhHHH---HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHcCCChhHHHH
Q 012365 163 NEEDII---KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAII 238 (465)
Q Consensus 163 ~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 238 (465)
+.|+.+ ++|+.|. .+|..+|++++.+|++.|++++|.++|++|. ....++..||+.++.+|++.|++++|.+
T Consensus 271 k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 346 (697)
T PLN03081 271 KCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346 (697)
T ss_pred HCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHH
Confidence 776654 5666553 5689999999999999999999999999874 4456677789999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHH-cccc
Q 012365 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKD-KFKD 317 (465)
Q Consensus 239 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~ 317 (465)
++..|.+.|+.||..+++.|+.+|++.|++++|.++|++|.+. +..+|+.++.+|++.|+.++|.++|++|.+ +..|
T Consensus 347 i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~--d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P 424 (697)
T PLN03081 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK--NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424 (697)
T ss_pred HHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC--CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999874 456899999999999999999999999998 5778
Q ss_pred hhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChh
Q 012365 318 DEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVL 397 (465)
Q Consensus 318 ~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 397 (465)
+..+++.++.++.. .|.+++|.++|+.|....|+.|+..+|+.++++|++.|++++|.+++++| +++|+..
T Consensus 425 d~~T~~~ll~a~~~------~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~ 495 (697)
T PLN03081 425 NHVTFLAVLSACRY------SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVN 495 (697)
T ss_pred CHHHHHHHHHHHhc------CCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHH
Confidence 88888888775443 49999999999999845799999999999999999999999999998765 6899999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhccCCCCC----ChhHHHHHHHhh------ccccchhhhcCCCCC
Q 012365 398 SYLWMYKAFLASGNRKSASKLLSKMPKDDP----HVRFVIQACKQT------YTIPSLQKERGFEKD 454 (465)
Q Consensus 398 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~----~~~~~l~~~~~~------~~~~~~~~~~~~~pd 454 (465)
+|++|+.+|...|+++.|..+++++.+.+| .|..+++.+... ....+.|++.|+.+.
T Consensus 496 ~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 496 MWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 999999999999999999999999987666 356666666554 333477788887654
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=4e-25 Score=228.56 Aligned_cols=405 Identities=13% Similarity=0.069 Sum_probs=232.2
Q ss_pred CCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 012365 9 PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88 (465)
Q Consensus 9 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 88 (465)
++..+|+.+...+...|++++|.+.|+++.+... .+...+..+...+...|++++|.+.++.+.+.+ +.+..++..+.
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 540 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALA 540 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3445555566666666666666666666555322 234445555555555666666666666655543 34455566666
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCCh---h
Q 012365 89 SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---E 165 (465)
Q Consensus 89 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---~ 165 (465)
..+.+.|+.++|..+|+++...+ +.+...+..+...+.+.|++++|.++++++.+.. +.+..++..+...+.+. +
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 618 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLN 618 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 66666666666666666655443 3445555566666666666666666666665432 33444555555444333 3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 012365 166 DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245 (465)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 245 (465)
++...++.+.+.. +.+...+..+..++.+.|++++|...|++.....+....++..+...+...|++++|.++++.+.+
T Consensus 619 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 697 (899)
T TIGR02917 619 KAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK 697 (899)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3334444444433 224455556666666666666666666653222222233466666666666666666666666666
Q ss_pred cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHH
Q 012365 246 AGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYH 325 (465)
Q Consensus 246 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 325 (465)
.+ +.+...+..+...+...|++++|...++.+.........+..+...+...|++++|.+.++.+.+..+.+...++.+
T Consensus 698 ~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l 776 (899)
T TIGR02917 698 QH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTAL 776 (899)
T ss_pred hC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 54 23455555666666666777777777766665554444555556666666777777777666666443333333322
Q ss_pred HHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 012365 326 FSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKA 405 (465)
Q Consensus 326 l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 405 (465)
.. ++.. .|+.++|.+.|+++. .. .++++..++.+...+...|+ ++|+..++++.+. .+.+..++..+...
T Consensus 777 a~-~~~~-----~g~~~~A~~~~~~~~-~~-~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~-~~~~~~~~~~~~~~ 846 (899)
T TIGR02917 777 AE-LYLA-----QKDYDKAIKHYRTVV-KK-APDNAVVLNNLAWLYLELKD-PRALEYAEKALKL-APNIPAILDTLGWL 846 (899)
T ss_pred HH-HHHH-----CcCHHHHHHHHHHHH-Hh-CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh-CCCCcHHHHHHHHH
Confidence 22 2222 267777777777766 22 12355566666666666666 6677777776665 34455566666667
Q ss_pred HHhcCChhhHHHHHhccCCCCCCh
Q 012365 406 FLASGNRKSASKLLSKMPKDDPHV 429 (465)
Q Consensus 406 ~~~~g~~~~A~~~~~~m~~~~~~~ 429 (465)
|...|++++|.++++++.+.+|..
T Consensus 847 ~~~~g~~~~A~~~~~~a~~~~~~~ 870 (899)
T TIGR02917 847 LVEKGEADRALPLLRKAVNIAPEA 870 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCC
Confidence 777777777777777777666643
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=5.2e-25 Score=227.74 Aligned_cols=397 Identities=13% Similarity=0.052 Sum_probs=330.4
Q ss_pred CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 012365 10 SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89 (465)
Q Consensus 10 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 89 (465)
+...+..+...+...|++++|.+.|+.+.+... .+..++..+...+...|+.++|..+++++.+.+ +.+...+..+..
T Consensus 498 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 575 (899)
T TIGR02917 498 FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQ 575 (899)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHH
Confidence 466788888999999999999999999988653 478889999999999999999999999998876 567788899999
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhh---CChhH
Q 012365 90 LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEED 166 (465)
Q Consensus 90 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~~~ 166 (465)
.+.+.|++++|..+++.+.... +.+...|..+...+...|++++|...|+++.+.. +.+...+..+...+ ++.+.
T Consensus 576 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 653 (899)
T TIGR02917 576 YYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAK 653 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998754 6788899999999999999999999999998753 23445555555554 44555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHc
Q 012365 167 IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA 246 (465)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 246 (465)
+...++.+.+.. +.+..++..+...+...|++++|.++++.+....+.....+..+...+...|++++|.+.|..+...
T Consensus 654 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 732 (899)
T TIGR02917 654 AITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR 732 (899)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 666777776654 3467889999999999999999999999865555555556888999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCC-CccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHH
Q 012365 247 GCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY-WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYH 325 (465)
Q Consensus 247 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 325 (465)
+ |+..++..+..++.+.|++++|.+.++.+.+..+ .+..+..+...|...|++++|...|+++.+..+++...++.+
T Consensus 733 ~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 810 (899)
T TIGR02917 733 A--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNL 810 (899)
T ss_pred C--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 6 6667888899999999999999999999876543 345667778888899999999999999998665555555554
Q ss_pred HHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCC-cHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 012365 326 FSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPP-SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYK 404 (465)
Q Consensus 326 l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 404 (465)
...+.. .|+ .+|+..+++.. . ..| ++.++..+...+...|++++|..+++++.+.+ +.+..++..++.
T Consensus 811 ~~~~~~------~~~-~~A~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 879 (899)
T TIGR02917 811 AWLYLE------LKD-PRALEYAEKAL-K--LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLAL 879 (899)
T ss_pred HHHHHh------cCc-HHHHHHHHHHH-h--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHH
Confidence 443333 377 78999999998 3 334 45567788888999999999999999999975 568999999999
Q ss_pred HHHhcCChhhHHHHHhccCC
Q 012365 405 AFLASGNRKSASKLLSKMPK 424 (465)
Q Consensus 405 ~~~~~g~~~~A~~~~~~m~~ 424 (465)
+|.+.|++++|.+++++|++
T Consensus 880 ~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 880 ALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHcCCHHHHHHHHHHHhC
Confidence 99999999999999999864
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.2e-20 Score=175.37 Aligned_cols=233 Identities=15% Similarity=0.088 Sum_probs=166.3
Q ss_pred HHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHhccC
Q 012365 19 TYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPN---SETFRSMISLNVKIK 95 (465)
Q Consensus 19 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g 95 (465)
..+...|++++|+..|+++.+.+. .+..++..+...+...|++++|..+++.+.+.+..++ ..++..+...|.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 345567888899999999888643 3566788888888888999999999888877542221 246778888888889
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHH
Q 012365 96 DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK 175 (465)
Q Consensus 96 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~ 175 (465)
++++|..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------- 178 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------- 178 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------
Confidence 9999999998888653 45677888888888999999999988888876432111100
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHH
Q 012365 176 SAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255 (465)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 255 (465)
....+..+...+.+.|++++|.+.|++.....+.....+..+...+.+.|++++|.++|+++...+......++
T Consensus 179 ------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 252 (389)
T PRK11788 179 ------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVL 252 (389)
T ss_pred ------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHH
Confidence 01224456667778888888888888743322333335777888888888888888888888876522224556
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHcCC
Q 012365 256 IALIEHLNSEGELNRLIQLLEEVHDP 281 (465)
Q Consensus 256 ~~ll~~~~~~g~~~~a~~~~~~~~~~ 281 (465)
..+..+|.+.|++++|...++.+.+.
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 67777777777777777777766543
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=8.5e-18 Score=164.55 Aligned_cols=405 Identities=11% Similarity=0.043 Sum_probs=280.3
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHh
Q 012365 13 SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92 (465)
Q Consensus 13 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 92 (465)
.+...-..+.+.|++++|+..|++..+. .|+...|..+..++...|++++|.+.++...+.. +.+...+..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3456677788899999999999998874 5678889899999999999999999999998875 456788999999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-------------
Q 012365 93 KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH------------- 159 (465)
Q Consensus 93 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~------------- 159 (465)
..|++++|..-|......+- .+......++..+........+...++.- ....|..........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~a~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDG-FRNEQSAQAVERLLKKFAESKAKEILETK--PENLPSVTFVGNYLQSFRPKPRPAGLED 282 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCCHHHHHHHHHHccCCcchhhhhc
Confidence 99999999988876654321 11111111111111110011111111100 000011110000000
Q ss_pred -----------------------hhCChhHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHh-cCCC
Q 012365 160 -----------------------NCSNEEDIIKYYEQLKSAG-GQI-TKYVFMALINAYTTCGEFEKARQVVLDA-EIPV 213 (465)
Q Consensus 160 -----------------------~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~ 213 (465)
......++.+.++...+.+ ..| ....+..+...+...|++++|...|++. ...+
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P 362 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP 362 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 0112344556677666654 233 4567788888899999999999999983 3444
Q ss_pred CChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCC-ccchhhHh
Q 012365 214 KSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW-MDGCCRLI 292 (465)
Q Consensus 214 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ 292 (465)
. ....|..+...+...|++++|...|++..+... .++..+..+...+...|++++|...|++..+..+. ...+..+.
T Consensus 363 ~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la 440 (615)
T TIGR00990 363 R-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLG 440 (615)
T ss_pred C-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHH
Confidence 3 333588889999999999999999999988752 35778888999999999999999999999876543 34456677
Q ss_pred hHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcH-------H-HH
Q 012365 293 LHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSR-------K-CL 364 (465)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~-------~-~~ 364 (465)
..+.+.|++++|+..|++.....+.+...++. +..++.. .|++++|+..|++.. . +.|+. . .+
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~-lg~~~~~-----~g~~~~A~~~~~~Al-~--l~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNFPEAPDVYNY-YGELLLD-----QNKFDEAIEKFDTAI-E--LEKETKPMYMNVLPLI 511 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHH-----ccCHHHHHHHHHHHH-h--cCCccccccccHHHHH
Confidence 77889999999999999988754333333433 3333333 499999999999988 3 33321 1 11
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCChhHHHHH
Q 012365 365 DFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQA 435 (465)
Q Consensus 365 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l~~ 435 (465)
+..+..+...|++++|.+++++..+.. +.+...+..+...+.+.|++++|.++|++..+...+....+.+
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~~a 581 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQA 581 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHHHH
Confidence 222223344699999999999998863 5556689999999999999999999999988766654444443
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=2.2e-19 Score=160.50 Aligned_cols=370 Identities=14% Similarity=0.082 Sum_probs=259.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH-HHH
Q 012365 45 STETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN-AIM 123 (465)
Q Consensus 45 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~li 123 (465)
-..+|..+.+.+...|+++.|+.+|+.+.+.. +-.+..|..+..++...|+.+.|.+.|.+..+. .|+..... .+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcchh
Confidence 34566666666666666666666666666653 334566666666666666666666666666554 24433322 233
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHhhCChhHHHHHHHHHHH-cCCCCC-HHHHHHHHHHHHhcCCHH
Q 012365 124 AGYFRKKDVQGALMVLKEMEQANVKPD-SQTFSYLIHNCSNEEDIIKYYEQLKS-AGGQIT-KYVFMALINAYTTCGEFE 200 (465)
Q Consensus 124 ~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~~g~~~ 200 (465)
..+...|++++|...|.+..+. .|. ...|+-+-..+...|+....+....+ ..+.|+ ...|-.|-+.|...+.++
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcch
Confidence 3344456666666666665543 221 11122222222233443332222222 123343 567788888899999999
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHc
Q 012365 201 KARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLE-PRAVIALIEHLNSEGELNRLIQLLEEVH 279 (465)
Q Consensus 201 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 279 (465)
.|...+.+.....+.....+..+...|...|+.+-|++.+++..+.. |+ +..|+.|..++-..|++.+|...+.+..
T Consensus 270 ~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 270 RAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 99999887433333334457788888999999999999999998865 55 6789999999999999999999999887
Q ss_pred CCCC-CccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCC
Q 012365 280 DPDY-WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLP 358 (465)
Q Consensus 280 ~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~ 358 (465)
...+ .+++.+.+...|...|.+++|..+|....+-. |.-....+-+...+.. +|++++|+..|++.. .++
T Consensus 348 ~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kq-----qgnl~~Ai~~Ykeal---rI~ 418 (966)
T KOG4626|consen 348 RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQ-----QGNLDDAIMCYKEAL---RIK 418 (966)
T ss_pred HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHh-----cccHHHHHHHHHHHH---hcC
Confidence 7654 46788889999999999999999999888733 3333333334444444 699999999999998 788
Q ss_pred CcH-HHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCChhH
Q 012365 359 PSR-KCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRF 431 (465)
Q Consensus 359 p~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 431 (465)
|+. ..|+.+...|-..|+++.|.+.+.+....+ |--....+.|...|-..|+..+|+.-+++.++..|+++.
T Consensus 419 P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 419 PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence 975 578889999999999999999999999853 444558999999999999999999999999999887643
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=2.4e-19 Score=166.73 Aligned_cols=293 Identities=15% Similarity=0.116 Sum_probs=167.1
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHH
Q 012365 91 NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY 170 (465)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 170 (465)
+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++..
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~------------------ 105 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ------------------ 105 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH------------------
Confidence 344556666666666665543 3344455556666666666666666666555421111000
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCC
Q 012365 171 YEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNL 250 (465)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 250 (465)
....+..+...|.+.|++++|..+|+++....+....+++.++..+...|++++|.+.++.+...+..+
T Consensus 106 -----------~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 174 (389)
T PRK11788 106 -----------RLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS 174 (389)
T ss_pred -----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc
Confidence 112344455555555666666666655332222233345555666666666666666666655544222
Q ss_pred CH----HHHHHHHHHHHccCcHHHHHHHHHHHcCCCCC-ccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhH-HHHH
Q 012365 251 EP----RAVIALIEHLNSEGELNRLIQLLEEVHDPDYW-MDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEM-AMEY 324 (465)
Q Consensus 251 ~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~ 324 (465)
+. ..+..+...+.+.|++++|...++++.+.... ...+..+...+.+.|++++|.++|+++....+.+.. .++.
T Consensus 175 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 254 (389)
T PRK11788 175 LRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPK 254 (389)
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHH
Confidence 11 12334444555566666666666665543322 223344445555666666666666666653222211 1222
Q ss_pred HHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 012365 325 HFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYK 404 (465)
Q Consensus 325 ~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 404 (465)
+.. .+.. .|++++|...++++. ...|+...+..+...+.+.|++++|..+++++.+. .|+..++..++.
T Consensus 255 l~~-~~~~-----~g~~~~A~~~l~~~~---~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~ 323 (389)
T PRK11788 255 LME-CYQA-----LGDEAEGLEFLRRAL---EEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLD 323 (389)
T ss_pred HHH-HHHH-----cCCHHHHHHHHHHHH---HhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHH
Confidence 222 2222 378888888888877 33566666777888888999999999999988875 578888888887
Q ss_pred HHHh---cCChhhHHHHHhccCC
Q 012365 405 AFLA---SGNRKSASKLLSKMPK 424 (465)
Q Consensus 405 ~~~~---~g~~~~A~~~~~~m~~ 424 (465)
.+.. .|+..+|..++++|.+
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHH
Confidence 7664 4588888888888775
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.86 E-value=3.8e-17 Score=170.36 Aligned_cols=391 Identities=11% Similarity=0.042 Sum_probs=227.5
Q ss_pred HHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHH-----------
Q 012365 18 ITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKP-NSETFR----------- 85 (465)
Q Consensus 18 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~----------- 85 (465)
-..+...|++++|+..|++..+... -+...+..+..++.+.|++++|...|++..+..-.. ....+.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 4456778999999999999988643 378888899999999999999999999988764211 112221
Q ss_pred -HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHhhC-
Q 012365 86 -SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD-SQTFSYLIHNCS- 162 (465)
Q Consensus 86 -~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~- 162 (465)
.....+.+.|++++|...|++..+.. +.+...+..+...+...|++++|++.|++..+.. |+ ...+..+...+.
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHh
Confidence 22345678899999999999998875 5567788889999999999999999999998642 33 333333333221
Q ss_pred -ChhHHHHHHHHHHHcCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHcCCC
Q 012365 163 -NEEDIIKYYEQLKSAGG--------QITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGR 232 (465)
Q Consensus 163 -~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~ 232 (465)
+.+++..+++.+..... ......+..+...+...|++++|.+.|++. ...+.. ...+..+...|.+.|+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~-~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS-VWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCC
Confidence 22333333332211100 001123444556667777777777777763 333332 2235667777777777
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCC-------------------------------
Q 012365 233 TSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDP------------------------------- 281 (465)
Q Consensus 233 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------------------------------- 281 (465)
+++|...++++.+... .++..+..+...+...++.++|...++.+...
T Consensus 511 ~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 7777777777765431 12333323333334455555555555443321
Q ss_pred ----------CCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHH
Q 012365 282 ----------DYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFI 351 (465)
Q Consensus 282 ----------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m 351 (465)
+..+.....+...+.+.|++++|+..|++.....+.+...+..+...+.. .|+.++|++.++..
T Consensus 590 ~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~------~g~~~eA~~~l~~l 663 (1157)
T PRK11447 590 AEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIA------QGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------CCCHHHHHHHHHHH
Confidence 12222334444455556666666666666555433333333333332222 26666666666655
Q ss_pred HhhcCCCC-cHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCC--CC---ChhHHHHHHHHHHhcCChhhHHHHHhccC
Q 012365 352 KDELGLPP-SRKCLDFLLGACVNARDLKRAHLIWKEYENAGL--PY---NVLSYLWMYKAFLASGNRKSASKLLSKMP 423 (465)
Q Consensus 352 ~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 423 (465)
. ...| +...+..+..++...|++++|.++++++....- +| +...+..+...+...|++++|.+.+++.+
T Consensus 664 l---~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 664 P---ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred h---ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4 2333 223344455555556666666666666554311 11 11244444555556666666666666554
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=2.4e-18 Score=154.03 Aligned_cols=405 Identities=13% Similarity=0.026 Sum_probs=313.4
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhc
Q 012365 14 YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVK 93 (465)
Q Consensus 14 y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 93 (465)
-..|.+-..+.|++++|++.-...-++... +....-.+-..+....+.+.....-....+.. +.-..+|+.+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 345666667788999998877766554322 33333333344555566666555444444433 4567899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHhhCChhHHHH
Q 012365 94 IKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ----TFSYLIHNCSNEEDIIK 169 (465)
Q Consensus 94 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~ 169 (465)
.|++++|..+++.+.+.. +..+..|..+..++...|+.+.|...|.+..+. .|+.. ....++.+.++..++..
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 999999999999999875 456889999999999999999999999998764 45543 35567777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCC
Q 012365 170 YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC 248 (465)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 248 (465)
-+....+... --...|+.|...+-..|++..|+..|++ ...++.-.. .|-.|...|-..+.++.|...+.+.....
T Consensus 206 cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~d-AYiNLGnV~ke~~~~d~Avs~Y~rAl~lr- 282 (966)
T KOG4626|consen 206 CYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLD-AYINLGNVYKEARIFDRAVSCYLRALNLR- 282 (966)
T ss_pred HHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchH-HHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence 6655555432 2346778888888999999999999998 344444443 58889999999999999999998877654
Q ss_pred CCC-HHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCC-ccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHH
Q 012365 249 NLE-PRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW-MDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHF 326 (465)
Q Consensus 249 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 326 (465)
|+ ...+..+...|...|.+|.|+..+++..+..+. +++|+.+..+....|++.+|.+.+.....-.+......+.+-
T Consensus 283 -pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLg 361 (966)
T KOG4626|consen 283 -PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLG 361 (966)
T ss_pred -CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHH
Confidence 55 556788888899999999999999999887654 779999999999999999999999998884444444444444
Q ss_pred HHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcH-HHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChh-HHHHHHH
Q 012365 327 SEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSR-KCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVL-SYLWMYK 404 (465)
Q Consensus 327 ~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~ 404 (465)
...-. .|.+++|..+|.... .+.|.- ..++.|...|..+|++++|...+++..+ +.|+.. +|+.+..
T Consensus 362 ni~~E------~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGn 430 (966)
T KOG4626|consen 362 NIYRE------QGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGN 430 (966)
T ss_pred HHHHH------hccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcch
Confidence 33333 499999999999988 677754 5678899999999999999999999998 466654 9999999
Q ss_pred HHHhcCChhhHHHHHhccCCCCCChhHHHHHHHh
Q 012365 405 AFLASGNRKSASKLLSKMPKDDPHVRFVIQACKQ 438 (465)
Q Consensus 405 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~l~~~~~ 438 (465)
.|-..|+...|.+.+.+....+|++...-+..+.
T Consensus 431 t~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLas 464 (966)
T KOG4626|consen 431 TYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLAS 464 (966)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHH
Confidence 9999999999999999999999987544443333
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=7.2e-17 Score=160.94 Aligned_cols=409 Identities=11% Similarity=0.006 Sum_probs=288.9
Q ss_pred CCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 012365 9 PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88 (465)
Q Consensus 9 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 88 (465)
-+.....-.+......|+.++|++++....... +.+...+..+..++...|++++|.+++++..+.. +.+...+..+.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 344555566777778999999999999997632 4456678889999999999999999999998875 55678888899
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHhhCChhHH
Q 012365 89 SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS-QTFSYLIHNCSNEEDI 167 (465)
Q Consensus 89 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~ 167 (465)
.++...|++++|...+++..+.. +.+.. +..+...+...|+.++|+..++++.+. .|+. ..+..+...+...+..
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCh
Confidence 99999999999999999998764 45666 888899999999999999999999875 4443 3333333333333333
Q ss_pred HHHHHHHHHcCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHhcC----CCCChHH---HHHHHHHH
Q 012365 168 IKYYEQLKSAGGQITK------YVFMALINAYT-----TCGEF---EKARQVVLDAEI----PVKSRSE---VKSALVSA 226 (465)
Q Consensus 168 ~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~a~~~~~~~~~----~~~~~~~---~~~~l~~~ 226 (465)
...++.+.+....|+. .....++.... ..+++ ++|++.++.+.. .+..... .....+.+
T Consensus 167 e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 167 APALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 3333333332222221 11222222222 22234 677777776331 1111111 11112345
Q ss_pred HHcCCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCc-----cchhhHhhHhhhcCC
Q 012365 227 LASHGRTSDAIIVYEEIKEAGCN-LEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWM-----DGCCRLILHCVRFKQ 300 (465)
Q Consensus 227 ~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 300 (465)
+...|++++|+..|+.+.+.+.. |+. .-..+..++...|++++|...++.+...+... .....+..++...++
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 56779999999999999987632 332 22235678999999999999999987654322 233455666789999
Q ss_pred hhHHHHHHHHHHHcccc------------hh--HHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCC-cHHHHH
Q 012365 301 LSSATDLLKQLKDKFKD------------DE--MAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPP-SRKCLD 365 (465)
Q Consensus 301 ~~~a~~~~~~~~~~~~~------------~~--~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~~~~ 365 (465)
+++|..+++.+....++ +. .....+...++.. .|+.++|++.++++. ...| +...+.
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~-----~g~~~eA~~~l~~al---~~~P~n~~l~~ 397 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY-----SNDLPQAEMRARELA---YNAPGNQGLRI 397 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHH---HhCCCCHHHHH
Confidence 99999999999875321 11 1112222223332 599999999999998 3344 566778
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCChhHHH
Q 012365 366 FLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVI 433 (465)
Q Consensus 366 ~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l 433 (465)
.+...+...|++++|++.+++..+.. |.+...+..++..+.+.|++++|.++++++++..|....+.
T Consensus 398 ~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 398 DYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 88889999999999999999999863 66677888888899999999999999999999888664443
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=1.8e-17 Score=161.71 Aligned_cols=359 Identities=9% Similarity=0.002 Sum_probs=202.5
Q ss_pred hcccCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHH
Q 012365 22 CDLLKVHVALDVVEQMVQGE--LVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDS 99 (465)
Q Consensus 22 ~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 99 (465)
.+..+|+...-.|..-.++- -.-+..-...++..+.+.|+++.|..+++...... +-+...+..++.+....|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHH
Confidence 44556655555554432210 01122334455667778888888888888887765 3345555556666677888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCC
Q 012365 100 AYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGG 179 (465)
Q Consensus 100 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 179 (465)
|...|+++.... |.+...+..+...+...|++++|...|++..+. .|+
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~----------------------------- 142 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSG----------------------------- 142 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------------------------
Confidence 888888888764 456677888888888888888888888888753 333
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 012365 180 QITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258 (465)
Q Consensus 180 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 258 (465)
+...+..+...+...|+.++|...++.+ ...+.+.. .+..+ ..+...|++++|...++.+.+....++......+
T Consensus 143 --~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l 218 (656)
T PRK15174 143 --NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLA 218 (656)
T ss_pred --cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHH
Confidence 2333444555556666666666655542 22222222 12222 2345556666666666665554322233333344
Q ss_pred HHHHHccCcHHHHHHHHHHHcCCCCC-ccchhhHhhHhhhcCChhH----HHHHHHHHHHcccchhHHHHHHHHHHHHhh
Q 012365 259 IEHLNSEGELNRLIQLLEEVHDPDYW-MDGCCRLILHCVRFKQLSS----ATDLLKQLKDKFKDDEMAMEYHFSEIFCQI 333 (465)
Q Consensus 259 l~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 333 (465)
..++...|++++|...++......+. +..+..+...+...|++++ |...|++.....+.+...+.. +..++..
T Consensus 219 ~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~-lg~~l~~- 296 (656)
T PRK15174 219 VDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTL-YADALIR- 296 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHH-
Confidence 45555666666666666655543322 2233445555555666554 566666665532222222222 2222222
Q ss_pred hcCCCCchhhhHHhHHHHHhhcCCCCc-HHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Q 012365 334 ATTDPPDVQIGLDLLQFIKDELGLPPS-RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNR 412 (465)
Q Consensus 334 ~~~~~~~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 412 (465)
.|++++|+..+++.. ...|+ ...+..+..++...|++++|...++++.+.+ |.+...+..+..++...|++
T Consensus 297 ----~g~~~eA~~~l~~al---~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~~~~a~al~~~G~~ 368 (656)
T PRK15174 297 ----TGQNEKAIPLLQQSL---ATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSKWNRYAAAALLQAGKT 368 (656)
T ss_pred ----CCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHCCCH
Confidence 366666666666666 23343 3344555666666777777777777666542 22223333345566667777
Q ss_pred hhHHHHHhccCCCCC
Q 012365 413 KSASKLLSKMPKDDP 427 (465)
Q Consensus 413 ~~A~~~~~~m~~~~~ 427 (465)
++|.+.+++..+.+|
T Consensus 369 deA~~~l~~al~~~P 383 (656)
T PRK15174 369 SEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHHHHHHhCh
Confidence 777777776665544
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.85 E-value=8.8e-17 Score=167.68 Aligned_cols=410 Identities=13% Similarity=0.043 Sum_probs=273.0
Q ss_pred CCC-CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHH----------------HHHHHHHHhcCCHHHHHHHH
Q 012365 7 ITP-SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETI----------------NSILHACEESYEFNLVRRIY 69 (465)
Q Consensus 7 ~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----------------~~ll~~~~~~~~~~~a~~~~ 69 (465)
+.| |+..+..++..+.+.|+.++|.+.++++.+..+. +.... ..+...+...|++++|.+.|
T Consensus 57 ~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~ 135 (1157)
T PRK11447 57 IDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASY 135 (1157)
T ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHH
Confidence 344 5677888888999999999999999999886532 33221 22334577889999999999
Q ss_pred HHHhhCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 012365 70 PMICHHNLKPNSET-FRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148 (465)
Q Consensus 70 ~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 148 (465)
+.+.+.+ +|+... ...+.......|+.++|.+.++++.+.. |.+...+..+...+...|+.++|+..++++.+....
T Consensus 136 ~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~ 213 (1157)
T PRK11447 136 DKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG 213 (1157)
T ss_pred HHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc
Confidence 9998765 445432 1112222334599999999999998875 556778888999999999999999999998653210
Q ss_pred C----------------CH---HHHHHHHHhhCChhHHH---HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012365 149 P----------------DS---QTFSYLIHNCSNEEDII---KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206 (465)
Q Consensus 149 p----------------~~---~~~~~ll~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 206 (465)
. +. ..+...+..+.....+. ..++........|.... ......+...|++++|+..|
T Consensus 214 ~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l 292 (1157)
T PRK11447 214 RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPEL 292 (1157)
T ss_pred hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHH
Confidence 0 00 01111122222222222 22222222222333221 23356678899999999999
Q ss_pred HHh-cCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCC-CHHHH---------H---HHHHHHHccCcHHHHH
Q 012365 207 LDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNL-EPRAV---------I---ALIEHLNSEGELNRLI 272 (465)
Q Consensus 207 ~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~---------~---~ll~~~~~~g~~~~a~ 272 (465)
++. ...+.. ...+..+...+.+.|++++|+..|++..+..... ....+ . .....+.+.|++++|.
T Consensus 293 ~~aL~~~P~~-~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~ 371 (1157)
T PRK11447 293 QQAVRANPKD-SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAE 371 (1157)
T ss_pred HHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHH
Confidence 984 334433 4458889999999999999999999998765221 11111 1 2234667899999999
Q ss_pred HHHHHHcCCCCC-ccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHH
Q 012365 273 QLLEEVHDPDYW-MDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFI 351 (465)
Q Consensus 273 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m 351 (465)
..++++.+..+. +..+..+...+...|++++|++.|++..+..+.+...+..+. .++.. ++.++|+..++.+
T Consensus 372 ~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~-~l~~~------~~~~~A~~~l~~l 444 (1157)
T PRK11447 372 RLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA-NLYRQ------QSPEKALAFIASL 444 (1157)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHh------cCHHHHHHHHHhC
Confidence 999999876543 345566777888999999999999999885444443333322 22222 5677887777665
Q ss_pred HhhcCCC--------CcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccC
Q 012365 352 KDELGLP--------PSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMP 423 (465)
Q Consensus 352 ~~~~~~~--------p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 423 (465)
. ..... -....+..+...+...|++++|.+.+++..+. .|.+...+..+...|.+.|++++|...++++.
T Consensus 445 ~-~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~-~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al 522 (1157)
T PRK11447 445 S-ASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL-DPGSVWLTYRLAQDLRQAGQRSQADALMRRLA 522 (1157)
T ss_pred C-HHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4 11100 00123444566677788888888888888876 25566677788888888888888888888887
Q ss_pred CCCCChh
Q 012365 424 KDDPHVR 430 (465)
Q Consensus 424 ~~~~~~~ 430 (465)
+..|...
T Consensus 523 ~~~P~~~ 529 (1157)
T PRK11447 523 QQKPNDP 529 (1157)
T ss_pred HcCCCCH
Confidence 7666543
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=1.4e-16 Score=155.53 Aligned_cols=328 Identities=12% Similarity=0.006 Sum_probs=251.2
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhcc
Q 012365 15 KKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKI 94 (465)
Q Consensus 15 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 94 (465)
..++..+.+.|+++.|+.+++........ +...+..++.+....|+++.|.+.++.+.+.. +.+...+..+...+...
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 34677788899999999999999887555 45556666677778999999999999999875 56678899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHhhCChhHHHHHHHH
Q 012365 95 KDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSY-LIHNCSNEEDIIKYYEQ 173 (465)
Q Consensus 95 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~~~~~ 173 (465)
|++++|...+++..... +.+...+..+...+...|++++|...++.+....-.+....+.. .+...++..++...++.
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARA 202 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999998764 55678889999999999999999999998876432222222221 12223455667777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhH----HHHHHHHHHHcCCC
Q 012365 174 LKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSD----AIIVYEEIKEAGCN 249 (465)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~m~~~~~~ 249 (465)
+.+....++......+...+...|++++|...+++.....+.....+..+...+...|++++ |...|++..+...
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P- 281 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS- 281 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-
Confidence 76665444455556667888999999999999998433333344457889999999999986 8999999988652
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCC-ccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHH
Q 012365 250 LEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW-MDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSE 328 (465)
Q Consensus 250 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 328 (465)
.+...+..+...+...|++++|...+++.....+. +.....+...+...|++++|+..|+++.... |+...+......
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~~~~a~ 360 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSKWNRYAAA 360 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHHHHHHH
Confidence 24667888999999999999999999998876543 3455667788889999999999999988743 333333333333
Q ss_pred HHHhhhcCCCCchhhhHHhHHHHH
Q 012365 329 IFCQIATTDPPDVQIGLDLLQFIK 352 (465)
Q Consensus 329 ~~~~~~~~~~~~~~~A~~~~~~m~ 352 (465)
++.. .|+.++|...|++..
T Consensus 361 al~~-----~G~~deA~~~l~~al 379 (656)
T PRK15174 361 ALLQ-----AGKTSEAESVFEHYI 379 (656)
T ss_pred HHHH-----CCCHHHHHHHHHHHH
Confidence 3333 499999999999988
No 19
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=9.4e-17 Score=137.80 Aligned_cols=365 Identities=14% Similarity=0.150 Sum_probs=207.5
Q ss_pred CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 012365 10 SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89 (465)
Q Consensus 10 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 89 (465)
+..+|..+|.++|+--..++|.++|++-.....+.+..+||.+|.+-+-.. ..+++.+|.+..+.||..|+|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHH
Confidence 345555555555555555555555555555444555555555554433221 1445555555555555555555555
Q ss_pred HHhccCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHhhCCh
Q 012365 90 LNVKIKDFDS----AYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQG-ALMVLKEMEQANVKPDSQTFSYLIHNCSNE 164 (465)
Q Consensus 90 ~~~~~g~~~~----a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 164 (465)
+.++.|+++. |.+++.+|++.|+.|+..+|..+|..+++.++..+ |..++.++..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N-------------------- 341 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQN-------------------- 341 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHH--------------------
Confidence 5555554443 23344455555555555555555555555444432 2222222221
Q ss_pred hHHHHHHHHHHHcCCC---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhc-------CCCCChHH-HHHHHHHHHHcCCC
Q 012365 165 EDIIKYYEQLKSAGGQ---I-TKYVFMALINAYTTCGEFEKARQVVLDAE-------IPVKSRSE-VKSALVSALASHGR 232 (465)
Q Consensus 165 ~~~~~~~~~~~~~~~~---~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~-~~~~l~~~~~~~g~ 232 (465)
.+....++ | |...|...+..|.+..+.+-|.++..-.. +++..... -|..+....|+...
T Consensus 342 --------~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 342 --------SLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred --------hhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 1 34455566677777777777766654321 11111111 26677888889999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHH
Q 012365 233 TSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLK 312 (465)
Q Consensus 233 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 312 (465)
.+.....|+.|..+-+-|++.+...++++....+.++-..++|.++...|.... -+--+.++..+.
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r--------------~~l~eeil~~L~ 479 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFR--------------SDLREEILMLLA 479 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh--------------HHHHHHHHHHHh
Confidence 999999999999988889999999999999999999999999999987664321 112223333333
Q ss_pred Hcc-cchhHHHHHHHHHHHHhhhcCCCCchhhhH-HhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHc
Q 012365 313 DKF-KDDEMAMEYHFSEIFCQIATTDPPDVQIGL-DLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENA 390 (465)
Q Consensus 313 ~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~-~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 390 (465)
... .|. .+-..-+...+..++ -++.++. .--.+|+ +..+ .....+.++-.+.+.|...+|.+++..+.+.
T Consensus 480 ~~k~hp~-tp~r~Ql~~~~ak~a----ad~~e~~e~~~~R~r-~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~ 551 (625)
T KOG4422|consen 480 RDKLHPL-TPEREQLQVAFAKCA----ADIKEAYESQPIRQR-AQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRK 551 (625)
T ss_pred cCCCCCC-ChHHHHHHHHHHHHH----HHHHHHHHhhHHHHH-hccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhc
Confidence 321 121 222222222233321 1222222 2233444 3333 4445566666788999999999999999655
Q ss_pred C-CCCChhHHH---HHHHHHHhcCChhhHHHHHhccCCCCCC
Q 012365 391 G-LPYNVLSYL---WMYKAFLASGNRKSASKLLSKMPKDDPH 428 (465)
Q Consensus 391 g-~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 428 (465)
+ --|-....+ .+++.-.+.+....|...++-|...+..
T Consensus 552 ~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 552 HNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred CCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 3 233344444 5666677788899999999988766653
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=1.2e-15 Score=149.42 Aligned_cols=376 Identities=10% Similarity=-0.009 Sum_probs=259.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 012365 49 INSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128 (465)
Q Consensus 49 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 128 (465)
+......+.+.|++++|...|++..+. .|+...|..+..+|.+.|++++|...++...+.+ +.+...|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 445666788899999999999998876 5788899999999999999999999999998765 4567789999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHc------------------------------C
Q 012365 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA------------------------------G 178 (465)
Q Consensus 129 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~------------------------------~ 178 (465)
.|++++|+.-|......+-..+.. ...++...............+... .
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 999999999887765432111111 111111110000000000000000 0
Q ss_pred CCCCH-HHHHHHHHH---HHhcCCHHHHHHHHHHhc-CC--CCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCC
Q 012365 179 GQITK-YVFMALINA---YTTCGEFEKARQVVLDAE-IP--VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLE 251 (465)
Q Consensus 179 ~~~~~-~~~~~l~~~---~~~~g~~~~a~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 251 (465)
..+.. ..+..+... ....+++++|.+.|+... .. .+.....|+.+...+...|++++|+..+++..+.. |+
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~ 363 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PR 363 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC
Confidence 00000 000001000 123467899999998732 22 22333357888888999999999999999998865 55
Q ss_pred -HHHHHHHHHHHHccCcHHHHHHHHHHHcCCCC-CccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHH
Q 012365 252 -PRAVIALIEHLNSEGELNRLIQLLEEVHDPDY-WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEI 329 (465)
Q Consensus 252 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 329 (465)
...|..+...+...|++++|...++...+..+ .++.+..+...+...|++++|...|++.....+.+...+.. +..+
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~-la~~ 442 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQ-LGVT 442 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHH-HHHH
Confidence 56788888889999999999999999876543 35677788888889999999999999998854444444333 3333
Q ss_pred HHhhhcCCCCchhhhHHhHHHHHhhcCCCC-cHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhH-------HHH
Q 012365 330 FCQIATTDPPDVQIGLDLLQFIKDELGLPP-SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLS-------YLW 401 (465)
Q Consensus 330 ~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-------~~~ 401 (465)
+.. .|++++|+..|++.. ...| ++..|+.+...+...|++++|...|++..+.. +.+... ++.
T Consensus 443 ~~~-----~g~~~eA~~~~~~al---~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~-p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 443 QYK-----EGSIASSMATFRRCK---KNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE-KETKPMYMNVLPLINK 513 (615)
T ss_pred HHH-----CCCHHHHHHHHHHHH---HhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CccccccccHHHHHHH
Confidence 332 499999999999988 3345 46788888999999999999999999998753 211111 122
Q ss_pred HHHHHHhcCChhhHHHHHhccCCCCCChhHHHHHHHhhc
Q 012365 402 MYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQACKQTY 440 (465)
Q Consensus 402 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l~~~~~~~ 440 (465)
.+..+...|++++|.+++++.++.+|.....+...+..+
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~ 552 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLL 552 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 222344479999999999999888886544444444443
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.81 E-value=5.7e-15 Score=147.87 Aligned_cols=174 Identities=11% Similarity=0.000 Sum_probs=114.0
Q ss_pred HHHHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCC
Q 012365 260 EHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPP 339 (465)
Q Consensus 260 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 339 (465)
..+...|++++|...++.+............+...+.+.|++++|...++...+.. |+.......+..... ..|
T Consensus 517 ~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~-----~~G 590 (987)
T PRK09782 517 YQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRY-----IPG 590 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHH-----hCC
Confidence 33346667777777776665443333334444455566777777777777666533 222221111111111 137
Q ss_pred chhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHH
Q 012365 340 DVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLL 419 (465)
Q Consensus 340 ~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 419 (465)
++++|+..+++.. ...|+...|..+..++.+.|+.++|...+++..+. -|.+...++.+..++...|++++|.+.+
T Consensus 591 r~~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-~Pd~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 591 QPELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALEL-EPNNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred CHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888887 55677777788888888888888888888888876 3667778888888888888888888888
Q ss_pred hccCCCCCChhHHHHHHHhhcccc
Q 012365 420 SKMPKDDPHVRFVIQACKQTYTIP 443 (465)
Q Consensus 420 ~~m~~~~~~~~~~l~~~~~~~~~~ 443 (465)
++.++.+|....+....+..+...
T Consensus 667 ~~AL~l~P~~~~a~~nLA~al~~l 690 (987)
T PRK09782 667 ERAHKGLPDDPALIRQLAYVNQRL 690 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHC
Confidence 888888887665555555554433
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=6.3e-15 Score=144.57 Aligned_cols=395 Identities=12% Similarity=0.043 Sum_probs=269.8
Q ss_pred HhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 012365 21 SCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSA 100 (465)
Q Consensus 21 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 100 (465)
..+.|+++.|++.|++..+....-....+ .++..+...|+.++|..++++..... +........+...+...|++++|
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 35678888888888888775432112233 67777777888888888888877221 22333444445677778888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhh---CChhHHHHHHHHHHHc
Q 012365 101 YSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC---SNEEDIIKYYEQLKSA 177 (465)
Q Consensus 101 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~~~~~~~~~~~~~~ 177 (465)
.++|+++.+.. |-+...+..++..+...++.++|++.++++... .|+...+..+...+ .+..++.+.++.+.+.
T Consensus 122 iely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 88888887765 445667777778888888888888888887754 45555553333333 2332355566666655
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH------------------------------------------------h
Q 012365 178 GGQITKYVFMALINAYTTCGEFEKARQVVLD------------------------------------------------A 209 (465)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~------------------------------------------------~ 209 (465)
. +-+...+..++.++.+.|-...|.++.++ +
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 4 22455555555666666555555444321 1
Q ss_pred cC--CCCChH-----HHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCC
Q 012365 210 EI--PVKSRS-----EVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPD 282 (465)
Q Consensus 210 ~~--~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 282 (465)
.. +..|.. .+..-.+-++...|+..++++.|+.+...+.+....+-..+..+|...++.++|..+++.+....
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 10 111110 01123455677889999999999999998866566788899999999999999999999986543
Q ss_pred C-----Cccc--hhhHhhHhhhcCChhHHHHHHHHHHHccc-----------chhHH---HHHHHHHHHHhhhcCCCCch
Q 012365 283 Y-----WMDG--CCRLILHCVRFKQLSSATDLLKQLKDKFK-----------DDEMA---MEYHFSEIFCQIATTDPPDV 341 (465)
Q Consensus 283 ~-----~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~---~~~~l~~~~~~~~~~~~~~~ 341 (465)
. .++. ...+.-++...+++++|..+++.+.+..+ .++.. ...+....+.. .|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~-----~gdl 432 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA-----LNDL 432 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH-----cCCH
Confidence 1 1111 24567788899999999999999987311 01111 12222222222 4999
Q ss_pred hhhHHhHHHHHhhcCCCC-cHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHh
Q 012365 342 QIGLDLLQFIKDELGLPP-SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420 (465)
Q Consensus 342 ~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 420 (465)
.+|++.++++. ...| |......+...+...|.+.+|++.++..... -|-+..+....+.++...|++.+|.++.+
T Consensus 433 ~~Ae~~le~l~---~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~ 508 (822)
T PRK14574 433 PTAQKKLEDLS---STAPANQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEWHQMELLTD 508 (822)
T ss_pred HHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999998 4455 6777788889999999999999999777765 46677788888999999999999999998
Q ss_pred ccCCCCCChh
Q 012365 421 KMPKDDPHVR 430 (465)
Q Consensus 421 ~m~~~~~~~~ 430 (465)
++....|...
T Consensus 509 ~l~~~~Pe~~ 518 (822)
T PRK14574 509 DVISRSPEDI 518 (822)
T ss_pred HHHhhCCCch
Confidence 8887777543
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=2.7e-15 Score=149.79 Aligned_cols=378 Identities=7% Similarity=-0.004 Sum_probs=269.4
Q ss_pred CCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 012365 9 PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88 (465)
Q Consensus 9 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 88 (465)
.+...+..+...+.+.|++++|.++|++..+.. +.+...+..+..++...|++++|...++++.+.. +.+.. +..+.
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la 123 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALA 123 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHH
Confidence 345568999999999999999999999998863 3356777788888999999999999999998874 55667 88889
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHh-h
Q 012365 89 SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS------QTFSYLIHN-C 161 (465)
Q Consensus 89 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~ll~~-~ 161 (465)
.++...|+.++|...+++..+.. |.+...+..+...+...|..++|++.++.... .|+. ......+.. .
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~ 199 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSF 199 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999875 45666777788888899999999998876553 2331 011111111 1
Q ss_pred ----CC---h---hHHHHHHHHHHHc-CCCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHhcCCCCC-hHHHHHHHH
Q 012365 162 ----SN---E---EDIIKYYEQLKSA-GGQITKY-VF----MALINAYTTCGEFEKARQVVLDAEIPVKS-RSEVKSALV 224 (465)
Q Consensus 162 ----~~---~---~~~~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~ 224 (465)
.. . +++.+.++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.....+ +......+.
T Consensus 200 ~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la 279 (765)
T PRK10049 200 MPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVA 279 (765)
T ss_pred ccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHH
Confidence 11 1 3344455565543 2233221 11 11134556779999999999985443321 211223367
Q ss_pred HHHHcCCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCC-----------cc----
Q 012365 225 SALASHGRTSDAIIVYEEIKEAGCNL---EPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW-----------MD---- 286 (465)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~---- 286 (465)
.+|...|++++|+..|+++....... .......+..++...|++++|...++.+....+. |+
T Consensus 280 ~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~ 359 (765)
T PRK10049 280 SAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWL 359 (765)
T ss_pred HHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHH
Confidence 78999999999999999987654211 1344666777889999999999999998765321 11
Q ss_pred -chhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCc-HHHH
Q 012365 287 -GCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS-RKCL 364 (465)
Q Consensus 287 -~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~-~~~~ 364 (465)
........+...|++++|+++++++....+.+...+..+.. ++.. .|++++|++.+++.. ...|+ ...+
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~-l~~~-----~g~~~~A~~~l~~al---~l~Pd~~~l~ 430 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYAS-VLQA-----RGWPRAAENELKKAE---VLEPRNINLE 430 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHh-----cCCHHHHHHHHHHHH---hhCCCChHHH
Confidence 23455667788999999999999998865444433333333 3322 499999999999998 56675 4555
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 012365 365 DFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYK 404 (465)
Q Consensus 365 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 404 (465)
......+...|++++|..+++++.+. .|+......+-.
T Consensus 431 ~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~ 468 (765)
T PRK10049 431 VEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLAR 468 (765)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 66667888999999999999999986 455554444443
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.73 E-value=6.1e-13 Score=133.53 Aligned_cols=400 Identities=10% Similarity=0.003 Sum_probs=264.3
Q ss_pred CCCHHHHHHH-HHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 012365 8 TPSSASYKKL-ITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEE-SYEFNLVRRIYPMICHHNLKPNSETFR 85 (465)
Q Consensus 8 ~p~~~~y~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~ 85 (465)
.|+..+.... ...|.+.|++++|++++..+.+.+.. +..-...|..++.. .++ +.+..++.. .++.++..+.
T Consensus 178 ~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ 251 (987)
T PRK09782 178 SPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRI 251 (987)
T ss_pred CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHH
Confidence 3445555555 88999999999999999999998644 45556666667776 366 777777542 3346788888
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCC-CCHHHHH------------------------------HHHHHHHh------
Q 012365 86 SMISLNVKIKDFDSAYSLLDDLKEMNLM-PTASMYN------------------------------AIMAGYFR------ 128 (465)
Q Consensus 86 ~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~------------------------------~li~~~~~------ 128 (465)
.+...|.+.|+.++|.++++++...... |...+|- .++..+.+
T Consensus 252 ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (987)
T PRK09782 252 TYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDA 331 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999999988887643111 2212111 01222222
Q ss_pred ---------------------------------------------------------cCCHHHHHHHHHHHHHC-C-CCC
Q 012365 129 ---------------------------------------------------------KKDVQGALMVLKEMEQA-N-VKP 149 (465)
Q Consensus 129 ---------------------------------------------------------~g~~~~a~~~~~~m~~~-~-~~p 149 (465)
.|+.++|.++|+..... + -.+
T Consensus 332 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 411 (987)
T PRK09782 332 AQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARL 411 (987)
T ss_pred HHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccccc
Confidence 34444444444444321 0 111
Q ss_pred CHHHHHHHHHhhCChhH------H----------------------HHHHHHHHH-cCC-CC--CHHHHHHHHHHHHhcC
Q 012365 150 DSQTFSYLIHNCSNEED------I----------------------IKYYEQLKS-AGG-QI--TKYVFMALINAYTTCG 197 (465)
Q Consensus 150 ~~~~~~~ll~~~~~~~~------~----------------------~~~~~~~~~-~~~-~~--~~~~~~~l~~~~~~~g 197 (465)
+.....-++..+...+. + ....+.... .+. ++ +...+..+..++.. +
T Consensus 412 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~ 490 (987)
T PRK09782 412 SQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-T 490 (987)
T ss_pred CHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-C
Confidence 22222223332221110 0 111111111 111 23 56777777777776 8
Q ss_pred CHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 012365 198 EFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276 (465)
Q Consensus 198 ~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 276 (465)
+.++|...+.+ ....+. . .....+...+...|++++|...|+++.... |+...+..+..++.+.|+.++|...++
T Consensus 491 ~~~eAi~a~~~Al~~~Pd-~-~~~L~lA~al~~~Gr~eeAi~~~rka~~~~--p~~~a~~~la~all~~Gd~~eA~~~l~ 566 (987)
T PRK09782 491 LPGVALYAWLQAEQRQPD-A-WQHRAVAYQAYQVEDYATALAAWQKISLHD--MSNEDLLAAANTAQAAGNGAARDRWLQ 566 (987)
T ss_pred CcHHHHHHHHHHHHhCCc-h-HHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 88889997776 333332 2 123334555568999999999999986643 555556677788899999999999999
Q ss_pred HHcCCCCCcc-chhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhc
Q 012365 277 EVHDPDYWMD-GCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDEL 355 (465)
Q Consensus 277 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~ 355 (465)
+..+..+... ....+.......|++++|...+++.....+ +...+.. +..++.. .|++++|+..+++..
T Consensus 567 qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P-~~~a~~~-LA~~l~~-----lG~~deA~~~l~~AL--- 636 (987)
T PRK09782 567 QAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP-SANAYVA-RATIYRQ-----RHNVPAAVSDLRAAL--- 636 (987)
T ss_pred HHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-CHHHHHH-HHHHHHH-----CCCHHHHHHHHHHHH---
Confidence 9987653221 112222233355999999999999987443 4333333 3333333 499999999999998
Q ss_pred CCCC-cHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCCh
Q 012365 356 GLPP-SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHV 429 (465)
Q Consensus 356 ~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 429 (465)
...| +...++.+..++...|+.++|...+++..+. .|-+...+..+..++...|++++|...+++..+..|..
T Consensus 637 ~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 637 ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG-LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 5566 4556677888899999999999999999987 47788899999999999999999999999999887744
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=2.2e-13 Score=117.48 Aligned_cols=384 Identities=13% Similarity=0.119 Sum_probs=246.9
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHH-HHHHHHHhhCC-----------
Q 012365 11 SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEES--YEFNLV-RRIYPMICHHN----------- 76 (465)
Q Consensus 11 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~~~~~a-~~~~~~~~~~~----------- 76 (465)
+.+=|.|+.. ...|.++.+.-+|+.|.+.|++.+...--.|++..+-. .++--+ .+-|-.|...|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 3445556554 55899999999999999999988887766666653322 221111 12222222221
Q ss_pred --------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 012365 77 --------LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148 (465)
Q Consensus 77 --------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 148 (465)
.+-+..+|.++|.+.|+....+.|.+++++-.....+.+..+||.+|.+-.-. ...+++.+|....+.
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcC
Confidence 24567889999999999999999999999888777788889999888764432 227788999988899
Q ss_pred CCHHHHHHHHHhhCChhH-------HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHH-----hc--CCC
Q 012365 149 PDSQTFSYLIHNCSNEED-------IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEK-ARQVVLD-----AE--IPV 213 (465)
Q Consensus 149 p~~~~~~~ll~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~-----~~--~~~ 213 (465)
||..|||+++.+.++.|. +.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.+ ++ ..+
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 999999999998666553 34588889999999999999999988888887654 3333332 11 111
Q ss_pred --CChHHHHHHHHHHHHcCCChhHHHHHHHHHHHc----CCCCCH---HHHHHHHHHHHccCcHHHHHHHHHHHcCCCCC
Q 012365 214 --KSRSEVKSALVSALASHGRTSDAIIVYEEIKEA----GCNLEP---RAVIALIEHLNSEGELNRLIQLLEEVHDPDYW 284 (465)
Q Consensus 214 --~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 284 (465)
+.+...|..-+..|.+..+.+-|..+-.-+... -+.|+. .-|..+....|+....+.-...++.|.-.-.-
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 112223666777777777777777766555432 123332 23566777788888888888899888765544
Q ss_pred ccch--hhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHH
Q 012365 285 MDGC--CRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRK 362 (465)
Q Consensus 285 ~~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~ 362 (465)
|+.+ ..++.+....++++-.-+++..+.. -..+.+. +-.++++..+. ..+..|+..
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~----~ght~r~-----------------~l~eeil~~L~-~~k~hp~tp 488 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKE----YGHTFRS-----------------DLREEILMLLA-RDKLHPLTP 488 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHH----hhhhhhH-----------------HHHHHHHHHHh-cCCCCCCCh
Confidence 4433 3455566666777777777766655 1112221 22233444444 334444323
Q ss_pred ---HHHHHHHHhHhhhhhhHHH-HHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCC
Q 012365 363 ---CLDFLLGACVNARDLKRAH-LIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKD 425 (465)
Q Consensus 363 ---~~~~ll~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 425 (465)
-+.....-|+ -++.++. .--.+|.+. .......+...-.+.|.|+.++|.+++.-..+.
T Consensus 489 ~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~ 551 (625)
T KOG4422|consen 489 EREQLQVAFAKCA--ADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRK 551 (625)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhc
Confidence 3333322221 1222222 223344443 445566777888889999999999999988643
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.71 E-value=2.3e-12 Score=126.76 Aligned_cols=381 Identities=12% Similarity=0.042 Sum_probs=258.7
Q ss_pred CCCCCH--HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 012365 6 EITPSS--ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSET 83 (465)
Q Consensus 6 ~~~p~~--~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 83 (465)
...|+. ..+ .++..+...|+.++|+..+++..... ..+......+...+...|++++|.++|+++.+.. +-++..
T Consensus 62 ~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~ 138 (822)
T PRK14574 62 KAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDL 138 (822)
T ss_pred hhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHH
Confidence 345654 234 77888888899999999999887321 2233344444567778899999999999998876 456777
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHhhC
Q 012365 84 FRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD-SQTFSYLIHNCS 162 (465)
Q Consensus 84 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~ 162 (465)
+..++..+...++.++|++.++++... .|+...+-.++..+...++..+|++.++++.+.. |+ ...+..++.+..
T Consensus 139 l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~--P~n~e~~~~~~~~l~ 214 (822)
T PRK14574 139 ISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA--PTSEEVLKNHLEILQ 214 (822)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 778888889999999999999998876 4666666444444444666666999999988753 43 222222222211
Q ss_pred Chh------------------------------------------------HHHHHH---HHHHH-cCCCCCH-H----H
Q 012365 163 NEE------------------------------------------------DIIKYY---EQLKS-AGGQITK-Y----V 185 (465)
Q Consensus 163 ~~~------------------------------------------------~~~~~~---~~~~~-~~~~~~~-~----~ 185 (465)
+.+ .+++.+ +.+.. .+-.|.. . .
T Consensus 215 ~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~ 294 (822)
T PRK14574 215 RNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRA 294 (822)
T ss_pred HcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHH
Confidence 100 011111 12221 1222321 1 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHHcCCChhHHHHHHHHHHHcC-----CCCCHHHHHHHH
Q 012365 186 FMALINAYTTCGEFEKARQVVLDAEIPVKS-RSEVKSALVSALASHGRTSDAIIVYEEIKEAG-----CNLEPRAVIALI 259 (465)
Q Consensus 186 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~~~~~ll 259 (465)
..-.+-++...|+..++++.|+.+.....+ +..+-..+..+|...+++++|..++..+.... ..++......|.
T Consensus 295 ~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~ 374 (822)
T PRK14574 295 RIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLY 374 (822)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHH
Confidence 223456788899999999999987655532 33346789999999999999999999986653 122333457889
Q ss_pred HHHHccCcHHHHHHHHHHHcCCCCC-----------cc-----chhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHH
Q 012365 260 EHLNSEGELNRLIQLLEEVHDPDYW-----------MD-----GCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAME 323 (465)
Q Consensus 260 ~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~-----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 323 (465)
-++...+++++|..+++.+.+..+. |+ .....+..+.-.|++.+|++.++++....+.+.-...
T Consensus 375 yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~ 454 (822)
T PRK14574 375 YSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRI 454 (822)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999999999874321 11 2345666778899999999999999875444444433
Q ss_pred HHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCc-HHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHH
Q 012365 324 YHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS-RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWM 402 (465)
Q Consensus 324 ~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 402 (465)
..-. +... .|.+.+|++.++... ...|+ ..+......++...|++.+|..+.+.+.+. .|+......|
T Consensus 455 ~~A~-v~~~-----Rg~p~~A~~~~k~a~---~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~l 523 (822)
T PRK14574 455 ALAS-IYLA-----RDLPRKAEQELKAVE---SLAPRSLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIPSQEL 523 (822)
T ss_pred HHHH-HHHh-----cCCHHHHHHHHHHHh---hhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHHHH
Confidence 3332 2222 599999999997777 55675 455567788888999999999999999986 4555444443
Q ss_pred HH
Q 012365 403 YK 404 (465)
Q Consensus 403 ~~ 404 (465)
-.
T Consensus 524 ~r 525 (822)
T PRK14574 524 DR 525 (822)
T ss_pred HH
Confidence 33
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.70 E-value=4.7e-13 Score=126.66 Aligned_cols=441 Identities=12% Similarity=0.052 Sum_probs=288.5
Q ss_pred CCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--HHHH
Q 012365 9 PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELV--PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPN--SETF 84 (465)
Q Consensus 9 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~ 84 (465)
-|+...+.|-..|.-.|++..++.+...+...... .-..+|-.+.+++-..|++++|...|.+..+.. ++ +..+
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~ 345 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPL 345 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccc
Confidence 35667777777777888888888888877653211 123456667778888888888888887776654 33 3344
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 012365 85 RSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK----DVQGALMVLKEMEQANVKPDSQTFSYLIHN 160 (465)
Q Consensus 85 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 160 (465)
--|...+.+.|+++.+...|+.+.... |-+..+..+|...|...+ ..+.|..++.+..+.. +.|...|..+-..
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql 423 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQL 423 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHH
Confidence 456777888888888888888877653 445566666666676664 3455555555554432 3344444444333
Q ss_pred hCC------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCC------CC----ChHHHHHHHH
Q 012365 161 CSN------EEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIP------VK----SRSEVKSALV 224 (465)
Q Consensus 161 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~----~~~~~~~~l~ 224 (465)
+-. .+-.....+.+...+..+.+...|.+...+...|++++|...|++.... .. ...++-..+.
T Consensus 424 ~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 424 LEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 322 1222334555666666788888898888889999999999988762111 11 1111222355
Q ss_pred HHHHcCCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCcHHHHHHHHHHHcCCC-CCccchhhHhhHhhhcCChh
Q 012365 225 SALASHGRTSDAIIVYEEIKEAGCNLEPRA-VIALIEHLNSEGELNRLIQLLEEVHDPD-YWMDGCCRLILHCVRFKQLS 302 (465)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 302 (465)
..+-..++++.|.+.|..+.... |.... |.-+....-..+...+|...+++....+ ..|+.+..+...+.....+.
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhc
Confidence 55666778889999999888876 55443 3334333344577788888888876654 56778888887888888888
Q ss_pred HHHHHHHHHHHc--ccchhHHHHHHHHHHHHhhhcC------CCCchhhhHHhHHHHHhhcCCCC-cHHHHHHHHHHhHh
Q 012365 303 SATDLLKQLKDK--FKDDEMAMEYHFSEIFCQIATT------DPPDVQIGLDLLQFIKDELGLPP-SRKCLDFLLGACVN 373 (465)
Q Consensus 303 ~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~ 373 (465)
.|.+-|..+.+. ..++..+.-++-.-++...... ..+..++|+++|.++. ...| |...-|.+.-.++.
T Consensus 582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL---~~dpkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL---RNDPKNMYAANGIGIVLAE 658 (1018)
T ss_pred ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH---hcCcchhhhccchhhhhhh
Confidence 888888777763 2234444433333333332211 1345778889998888 4445 66666778888899
Q ss_pred hhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCC-CC-hhHHHHHHHhhccccchhhh---
Q 012365 374 ARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDD-PH-VRFVIQACKQTYTIPSLQKE--- 448 (465)
Q Consensus 374 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~-~~~~l~~~~~~~~~~~~~~~--- 448 (465)
.|+++.|..+|.+..+.. ..+..+|..+.++|..+|+|-.|.+.|+..++.- .. -..+|.-.+.++...+..++
T Consensus 659 kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred ccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 999999999999999874 4567789999999999999999999999877543 22 24455555555444433322
Q ss_pred -----cCCCCCcchhh
Q 012365 449 -----RGFEKDRDTLL 459 (465)
Q Consensus 449 -----~~~~pd~~t~~ 459 (465)
..+.|...++.
T Consensus 738 ~ll~a~~~~p~~~~v~ 753 (1018)
T KOG2002|consen 738 ALLKARHLAPSNTSVK 753 (1018)
T ss_pred HHHHHHHhCCccchHH
Confidence 44666655543
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.62 E-value=9.4e-12 Score=118.06 Aligned_cols=409 Identities=10% Similarity=0.018 Sum_probs=273.8
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 012365 12 ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLN 91 (465)
Q Consensus 12 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 91 (465)
.+|-.+-++|-..|++++|...|.+..+....-....+--|...+.+.|+++.+...|+.+.+.. +-+..+...|...|
T Consensus 308 es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Ly 386 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLY 386 (1018)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHH
Confidence 45667888999999999999999888765332123344557788999999999999999998875 55678888888888
Q ss_pred hccC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHhh--
Q 012365 92 VKIK----DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME----QANVKPDSQTFSYLIHNC-- 161 (465)
Q Consensus 92 ~~~g----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~p~~~~~~~ll~~~-- 161 (465)
+..+ ..+.|..++.+....- +.|...|-.+...+-... ...++.+|.... ..+-.+.+...|.+-...
T Consensus 387 a~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~ 464 (1018)
T KOG2002|consen 387 AHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFR 464 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHH
Confidence 8775 4566777776666543 567777877777665544 444476666543 344445555555554432
Q ss_pred -CChhHHHHHHHHHHHc---CCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC
Q 012365 162 -SNEEDIIKYYEQLKSA---GGQ------ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHG 231 (465)
Q Consensus 162 -~~~~~~~~~~~~~~~~---~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 231 (465)
+..+.+...+...... ... ++..+--.+...+-..++.+.|.+.+..+-...+.-...|-.+.......+
T Consensus 465 ~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~ 544 (1018)
T KOG2002|consen 465 LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKN 544 (1018)
T ss_pred hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhcc
Confidence 3344444444444332 112 222233345556667788999999998754444444334555553444457
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCC-ccchhhHhhH--hh------------
Q 012365 232 RTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW-MDGCCRLILH--CV------------ 296 (465)
Q Consensus 232 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~--~~------------ 296 (465)
...+|...+++....+ .-++..++.+-..+.+...+..|.+-|..+.+.... .++|..+..+ |.
T Consensus 545 ~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek 623 (1018)
T KOG2002|consen 545 NLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEK 623 (1018)
T ss_pred CcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHH
Confidence 7888888888877654 224444444445677777777777755555443322 4666543332 21
Q ss_pred hcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhh
Q 012365 297 RFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARD 376 (465)
Q Consensus 297 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~ 376 (465)
..+..+.|+..|.++.+..+.|....+.+-. .+.. .|++.+|..+|.+++ +... -...+|-.+.++|..+|+
T Consensus 624 ~kk~~~KAlq~y~kvL~~dpkN~yAANGIgi-VLA~-----kg~~~~A~dIFsqVr-Ea~~-~~~dv~lNlah~~~e~~q 695 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLRNDPKNMYAANGIGI-VLAE-----KGRFSEARDIFSQVR-EATS-DFEDVWLNLAHCYVEQGQ 695 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhccchhh-hhhh-----ccCchHHHHHHHHHH-HHHh-hCCceeeeHHHHHHHHHH
Confidence 3456778889999888866666666555433 3333 499999999999999 4332 334467789999999999
Q ss_pred hhHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCChhHH
Q 012365 377 LKRAHLIWKEYENA-GLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFV 432 (465)
Q Consensus 377 ~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 432 (465)
+..|.+.|+...+. .-..++.....|.+++.+.|++.+|.+.+.......|..+++
T Consensus 696 y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v 752 (1018)
T KOG2002|consen 696 YRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSV 752 (1018)
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchH
Confidence 99999999988765 445677789999999999999999999998888776654443
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.60 E-value=5.2e-11 Score=112.32 Aligned_cols=199 Identities=12% Similarity=0.105 Sum_probs=132.8
Q ss_pred CCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 012365 7 ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS 86 (465)
Q Consensus 7 ~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 86 (465)
+.|.+...-.....+.-.|+.++|.+++.+..+.... +...|-.|...|-..|+.+++...+-.+...+ +.|...|-.
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ 212 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKR 212 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHH
Confidence 3443444333444444459999999999999887544 77889999999999999999988776555444 667899999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHh----hC
Q 012365 87 MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN----CS 162 (465)
Q Consensus 87 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~----~~ 162 (465)
+-....+.|+++.|.-.|.+.++.. |++...+---+..|-+.|+...|.+.|.++....-+.|..-+..++.. +.
T Consensus 213 ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 213 LADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999876 667666667778899999999999999999875322222222222221 11
Q ss_pred Ch---hHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012365 163 NE---EDIIKYYEQLK-SAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208 (465)
Q Consensus 163 ~~---~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 208 (465)
.. ..+.+.++... +.+-..+...++.++..+.+..+++.|......
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~ 341 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVD 341 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHH
Confidence 11 11222222222 122233444555566666666666666555543
No 30
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=1.8e-11 Score=113.09 Aligned_cols=290 Identities=11% Similarity=0.055 Sum_probs=198.9
Q ss_pred HHHHHHHHhc--ccCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH--HHH
Q 012365 14 YKKLITYSCD--LLKVHVALDVVEQMVQGELVPSTET-INSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR--SMI 88 (465)
Q Consensus 14 y~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li 88 (465)
+..+..++.. .|+++.|.+.+....+..- ++.. |.....+....|+++.+.+.+.++.+. .|+..... ...
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a 160 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRV 160 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHH
Confidence 3344454443 5999999988887665422 2233 323334447889999999999999875 45554333 336
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHhh
Q 012365 89 SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ-------TFSYLIHNC 161 (465)
Q Consensus 89 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-------~~~~ll~~~ 161 (465)
..+...|+++.|...++++.+.+ |-+......+...|.+.|++++|.+++..+.+.+..++.. .|..++...
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 68889999999999999998876 6678889999999999999999999999999876553321 222222222
Q ss_pred CCh---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHH
Q 012365 162 SNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAII 238 (465)
Q Consensus 162 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 238 (465)
... ....++++.+-+. .+.++.....+...+...|+.++|.+++++.-..+.+. --.++.+....++++++++
T Consensus 240 ~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~---~l~~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDE---RLVLLIPRLKTNNPEQLEK 315 (398)
T ss_pred HHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH---HHHHHHhhccCCChHHHHH
Confidence 122 2222333333222 24467777888888888888888888887632222222 1234455556688888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHH
Q 012365 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKD 313 (465)
Q Consensus 239 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 313 (465)
..+...+... -|+..+..+-..|.+.+++++|.+.|+...+..++...+..+...+.+.|+.++|.+.+++-..
T Consensus 316 ~~e~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 316 VLRQQIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8888887652 2455566777888888888888888888887766655566677777778888888777776543
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.59 E-value=4.9e-12 Score=117.38 Aligned_cols=292 Identities=14% Similarity=0.025 Sum_probs=176.2
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHH
Q 012365 93 KIKDFDSAYSLLDDLKEMNLMPTAS-MYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYY 171 (465)
Q Consensus 93 ~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~ 171 (465)
..|+++.|++.+.+..+. .|+.. .+-....++.+.|+.+.|.+.+.+..+.. |+.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~-------------------- 151 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GND-------------------- 151 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcC--------------------
Confidence 457777777777666554 34432 23333456666777777777777765421 221
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCC
Q 012365 172 EQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLE 251 (465)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 251 (465)
...+.......+...|+++.|.+.++.+....+.....+..+...+...|++++|.+.+..+.+.++. +
T Consensus 152 ----------~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~ 220 (409)
T TIGR00540 152 ----------NILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-D 220 (409)
T ss_pred ----------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-C
Confidence 11122233556667777777777777643333333334667777777788888888888777777643 3
Q ss_pred HHHHH-HHHHHH---HccCcHHHHHHHHHHHcCCCC-----CccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHH
Q 012365 252 PRAVI-ALIEHL---NSEGELNRLIQLLEEVHDPDY-----WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAM 322 (465)
Q Consensus 252 ~~~~~-~ll~~~---~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 322 (465)
+..+. .-..++ ...+..+++.+.+..+.+..+ .+..+......+...|+.++|.+++++..+..+++....
T Consensus 221 ~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~ 300 (409)
T TIGR00540 221 DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS 300 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch
Confidence 33221 111111 222222222223333222221 344455566667778888888888888777444333221
Q ss_pred HHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHH
Q 012365 323 EYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWM 402 (465)
Q Consensus 323 ~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 402 (465)
...+. .......++.+.+++.++.......-.|+.....++.+.|.+.|++++|.+.|+........|+...+..+
T Consensus 301 ~~~l~----~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L 376 (409)
T TIGR00540 301 LPLCL----PIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMA 376 (409)
T ss_pred hHHHH----HhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH
Confidence 11222 12222347778888888877722222232255678899999999999999999964444458999999999
Q ss_pred HHHHHhcCChhhHHHHHhccC
Q 012365 403 YKAFLASGNRKSASKLLSKMP 423 (465)
Q Consensus 403 ~~~~~~~g~~~~A~~~~~~m~ 423 (465)
...+.+.|+.++|.+++++.+
T Consensus 377 a~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999743
No 32
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.58 E-value=3.2e-12 Score=119.86 Aligned_cols=275 Identities=19% Similarity=0.213 Sum_probs=172.7
Q ss_pred ccccCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCC------------------------CCCCHHHHHHHHHHHH
Q 012365 2 HAKLEITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGE------------------------LVPSTETINSILHACE 57 (465)
Q Consensus 2 ~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~------------------------~~p~~~~~~~ll~~~~ 57 (465)
++..|+.|+.+||..+|..||..|+++.|- +|..|.-.. -.|.+.||..|..+|.
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr 94 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYR 94 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHH
Confidence 356799999999999999999999999998 777775322 1356789999999999
Q ss_pred hcCCHHHHHHH---HHHHh----hCCC-----------------CCCHH----------HHHHHHHHHhcc------CC-
Q 012365 58 ESYEFNLVRRI---YPMIC----HHNL-----------------KPNSE----------TFRSMISLNVKI------KD- 96 (465)
Q Consensus 58 ~~~~~~~a~~~---~~~~~----~~~~-----------------~~~~~----------~~~~li~~~~~~------g~- 96 (465)
..||+.....+ ++.+. ..|+ -||.. .|..++....+. +.
T Consensus 95 ~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~ 174 (1088)
T KOG4318|consen 95 IHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPF 174 (1088)
T ss_pred hccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchH
Confidence 99987653322 22222 1221 22222 122222222111 11
Q ss_pred ----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhH
Q 012365 97 ----------FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED 166 (465)
Q Consensus 97 ----------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 166 (465)
....+++.+..++..-.|+..+|.+++..-..+|+.+.|..++.+|++.|++.+.+.|..++-+-....-
T Consensus 175 ~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g~~~~q~ 254 (1088)
T KOG4318|consen 175 QVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLGINAAQV 254 (1088)
T ss_pred HHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhcCccchH
Confidence 1112222222222111589999999999999999999999999999999999999999999988666677
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhH-----HHHHHH
Q 012365 167 IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSD-----AIIVYE 241 (465)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-----a~~~~~ 241 (465)
++.+.+.|.+.|+.|+..|+...+-.+.++|....+.+..+. ....+...+..+..+...+.+.+. ....+.
T Consensus 255 ~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~---~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k 331 (1088)
T KOG4318|consen 255 FEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQL---AHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTK 331 (1088)
T ss_pred HHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccch---hhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhh
Confidence 788999999999999999999998888887764433332210 001111113333333222222221 122222
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCC
Q 012365 242 EIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDP 281 (465)
Q Consensus 242 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 281 (465)
+..-.|+......| +++.-....|+-+...++...+...
T Consensus 332 ~~fLlg~d~~~aiw-s~c~~l~hQgk~e~veqlvg~l~np 370 (1088)
T KOG4318|consen 332 KLFLLGTDILEAIW-SMCEKLRHQGKGEEVEQLVGQLLNP 370 (1088)
T ss_pred HHHHhccccchHHH-HHHHHHHHcCCCchHHHHHhhhcCC
Confidence 22223444444333 4444445578888888887777543
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.57 E-value=4.3e-10 Score=102.59 Aligned_cols=398 Identities=11% Similarity=0.019 Sum_probs=238.4
Q ss_pred HHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh----hCCCCCCHHHHHHHHHHHhcc
Q 012365 19 TYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC----HHNLKPNSETFRSMISLNVKI 94 (465)
Q Consensus 19 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~~~~~ 94 (465)
-+|.+..-++.|..+++..++. ++.+...|.+-...=-..|+.+.+.++++.-. ..|+..+...|-.=...|-..
T Consensus 414 lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~a 492 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDA 492 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhc
Confidence 3455556677777777777664 55566666665555556677777777665533 456667777777666677777
Q ss_pred CCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHh---hCChhHHHH
Q 012365 95 KDFDSAYSLLDDLKEMNLMP--TASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIK 169 (465)
Q Consensus 95 g~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~---~~~~~~~~~ 169 (465)
|..-.+..+......-|+.- -..||+.-...|.+.+.++-|..+|....+- .+-+...|...... ++..+....
T Consensus 493 gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 493 GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 77777777777666655432 2456777777788888888888888777653 12233344433332 555566666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCC
Q 012365 170 YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN 249 (465)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 249 (465)
+++.....- +-....|......+...|++..|..++.+.-...+++...|-+-+.....+.+++.|..+|.+....+
T Consensus 572 llqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~s-- 648 (913)
T KOG0495|consen 572 LLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSIS-- 648 (913)
T ss_pred HHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC--
Confidence 666666553 33456666677777888888888888877333333344457777888888888888888888877654
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCcc-chhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHH
Q 012365 250 LEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD-GCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSE 328 (465)
Q Consensus 250 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 328 (465)
|+...|..-+..-.-.++.++|.+++++..+.-+... .|..+...+-+.++.+.|.+.|..-.+ ..|+..+.-.++..
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k-~cP~~ipLWllLak 727 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK-KCPNSIPLWLLLAK 727 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc-cCCCCchHHHHHHH
Confidence 6777776666666667778888888777665432221 233333444555555555555554433 23333333333333
Q ss_pred HHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHc------------------
Q 012365 329 IFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENA------------------ 390 (465)
Q Consensus 329 ~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~------------------ 390 (465)
+=.. .|.+-+|..++++.+ ..-+-+...|-..|+.-.+.|+.+.|..+..+..+.
T Consensus 728 leEk-----~~~~~rAR~ildrar--lkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~ 800 (913)
T KOG0495|consen 728 LEEK-----DGQLVRARSILDRAR--LKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRP 800 (913)
T ss_pred HHHH-----hcchhhHHHHHHHHH--hcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCc
Confidence 2222 255666666666655 122224555556666666666666665554444432
Q ss_pred -----------CCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCCh
Q 012365 391 -----------GLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHV 429 (465)
Q Consensus 391 -----------g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 429 (465)
...-|+...-.+...+....+++.|.+.|++..+.++.+
T Consensus 801 ~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~ 850 (913)
T KOG0495|consen 801 QRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDN 850 (913)
T ss_pred ccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 012233344444455555566666666666666666644
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.57 E-value=5.5e-12 Score=109.80 Aligned_cols=413 Identities=14% Similarity=0.135 Sum_probs=263.8
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhhCCCCC----CHHHHHHHH
Q 012365 14 YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETIN-SILHACEESYEFNLVRRIYPMICHHNLKP----NSETFRSMI 88 (465)
Q Consensus 14 y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~li 88 (465)
...|.+-|..+....+|+..|+-+.+..+-|+..... .+...+.+...+.+|.++|......-... ...+.+.+-
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 3345566777888999999999999888888876544 34566889999999999998877642111 234556666
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------------CCHHHHHH
Q 012365 89 SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK------------PDSQTFSY 156 (465)
Q Consensus 89 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~------------p~~~~~~~ 156 (465)
-.+.+.|.++.|...|+...+. .|+-.+--.|+-++..-|+.++..+.|.+|..-... |+....+.
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 6788999999999999998776 488776666666677789999999999999754322 34444444
Q ss_pred HHHh--h---CC--hhHHHHHHH---HHHHcCCCCCH-------------HHHH--------HHHHHHHhcCCHHHHHHH
Q 012365 157 LIHN--C---SN--EEDIIKYYE---QLKSAGGQITK-------------YVFM--------ALINAYTTCGEFEKARQV 205 (465)
Q Consensus 157 ll~~--~---~~--~~~~~~~~~---~~~~~~~~~~~-------------~~~~--------~l~~~~~~~g~~~~a~~~ 205 (465)
.|.. + -+ ..++++..- .+..--+.|+- ..+. .-...+.+.|+++.|.++
T Consensus 362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aiei 441 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEI 441 (840)
T ss_pred HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHH
Confidence 3332 1 11 112222111 11111112211 0011 112357889999999998
Q ss_pred HHHhcCCCCChHH-HHHHH--HHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCC
Q 012365 206 VLDAEIPVKSRSE-VKSAL--VSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPD 282 (465)
Q Consensus 206 ~~~~~~~~~~~~~-~~~~l--~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 282 (465)
++-.........+ .-+.| +..+....++.+|..+-+...... +-++...+.--......|++++|.+.+++....+
T Consensus 442 lkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 442 LKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred HHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence 8754333322221 12222 222222446777777776665432 1233333222233456789999999999987765
Q ss_pred CC-ccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcH
Q 012365 283 YW-MDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSR 361 (465)
Q Consensus 283 ~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~ 361 (465)
.. ......+...+...|+.++|++.|-++..-...+ ......+...+..+ .+..+|++++.+.. .-++.|+
T Consensus 521 asc~ealfniglt~e~~~~ldeald~f~klh~il~nn-~evl~qianiye~l-----ed~aqaie~~~q~~--slip~dp 592 (840)
T KOG2003|consen 521 ASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN-AEVLVQIANIYELL-----EDPAQAIELLMQAN--SLIPNDP 592 (840)
T ss_pred hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHh-----hCHHHHHHHHHHhc--ccCCCCH
Confidence 43 4455667777788999999999988776532222 22223334444442 67788888887776 3344467
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCC---ChhHHHHHHHh
Q 012365 362 KCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDP---HVRFVIQACKQ 438 (465)
Q Consensus 362 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~l~~~~~ 438 (465)
....-|...|-+.|+-.+|.+.+-+-.+. +|.|..+...|..-|....-+++|+.+|++.--..| .|..++.+|-.
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFR 671 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 77788888888888888888777666655 677777777777777777778888888877543333 46777777755
No 35
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.56 E-value=1.3e-11 Score=113.91 Aligned_cols=282 Identities=12% Similarity=0.051 Sum_probs=174.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHH
Q 012365 94 IKDFDSAYSLLDDLKEMNLMPTASMYNAI-MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE 172 (465)
Q Consensus 94 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~ 172 (465)
.|+++.|++.+....... +++..+..+ ..+..+.|+++.|.+.+.++.+. .|+...
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~------------------- 153 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQL------------------- 153 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchH-------------------
Confidence 477777776666554431 222222222 33446677777777777776643 222211
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCH
Q 012365 173 QLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP 252 (465)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 252 (465)
.........+...|+++.|.+.+++.....+........+...|.+.|++++|.+++..+.+.+..++.
T Consensus 154 -----------~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~ 222 (398)
T PRK10747 154 -----------PVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE 222 (398)
T ss_pred -----------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH
Confidence 111122455667777777777777643333333334667777777777777777777777776644222
Q ss_pred -------HHHHHHHHHHHccCcHHHHHHHHHHHcCC-CCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHH
Q 012365 253 -------RAVIALIEHLNSEGELNRLIQLLEEVHDP-DYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEY 324 (465)
Q Consensus 253 -------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 324 (465)
.+|..++.......+.+...++++.+.+. ...+.....+...+...|+.++|.+++++..+. .++... -
T Consensus 223 ~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l-~- 299 (398)
T PRK10747 223 HRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERL-V- 299 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHH-H-
Confidence 12223333333444455555666655332 123444556666667778888888877777662 222211 0
Q ss_pred HHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCC-cHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHH
Q 012365 325 HFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPP-SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMY 403 (465)
Q Consensus 325 ~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 403 (465)
.++ .....++.+++++..+... ...| |+..+..+...|...|++++|.+.|+...+. .|+...+..+.
T Consensus 300 ---~l~---~~l~~~~~~~al~~~e~~l---k~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La 368 (398)
T PRK10747 300 ---LLI---PRLKTNNPEQLEKVLRQQI---KQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLA 368 (398)
T ss_pred ---HHH---hhccCCChHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 011 1112378888888888887 4445 4556778888999999999999999999985 79999999999
Q ss_pred HHHHhcCChhhHHHHHhccC
Q 012365 404 KAFLASGNRKSASKLLSKMP 423 (465)
Q Consensus 404 ~~~~~~g~~~~A~~~~~~m~ 423 (465)
..+.+.|+.++|.+++++-+
T Consensus 369 ~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 369 DALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999998754
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.53 E-value=2.8e-14 Score=125.83 Aligned_cols=261 Identities=16% Similarity=0.131 Sum_probs=83.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 012365 121 AIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFE 200 (465)
Q Consensus 121 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 200 (465)
.+...+.+.|++++|++++++......+|+...|.. .+.......++.+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~-------------------------------~~a~La~~~~~~~ 61 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWR-------------------------------LLADLAWSLGDYD 61 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccc-------------------------------ccccccccccccc
Confidence 456777788888888888866543322344333322 2233333444555
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcC
Q 012365 201 KARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280 (465)
Q Consensus 201 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 280 (465)
.|.+.++++-...+.....+..++.. ...+++++|.+++....+.. +++..+..++..+...++++++..+++.+..
T Consensus 62 ~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~ 138 (280)
T PF13429_consen 62 EAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEE 138 (280)
T ss_dssp -----------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 55555544322222222223444444 45555555555555443332 3444444555555555555555555555432
Q ss_pred CC---CCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCC
Q 012365 281 PD---YWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGL 357 (465)
Q Consensus 281 ~~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~ 357 (465)
.. ..+..+......+.+.|+.++|++.+++..+..+.+......++..++. .|+.+++.++++... ...
T Consensus 139 ~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~------~~~~~~~~~~l~~~~-~~~- 210 (280)
T PF13429_consen 139 LPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLID------MGDYDEAREALKRLL-KAA- 210 (280)
T ss_dssp -T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT------TCHHHHHHHHHHHHH-HH--
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH------CCChHHHHHHHHHHH-HHC-
Confidence 21 1122233344445556666666666666665433334444443333222 377777777777766 322
Q ss_pred CCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCC
Q 012365 358 PPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424 (465)
Q Consensus 358 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 424 (465)
..|+..+..+..++...|+.++|...|++..+. .|.|+.....+.+++...|+.++|.++.++..+
T Consensus 211 ~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 211 PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHT-----------------
T ss_pred cCHHHHHHHHHHHhccccccccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence 445567788889999999999999999999886 377888999999999999999999999887654
No 37
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=6.6e-11 Score=98.79 Aligned_cols=294 Identities=13% Similarity=0.075 Sum_probs=198.1
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHhccCCHHHH
Q 012365 24 LLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPN---SETFRSMISLNVKIKDFDSA 100 (465)
Q Consensus 24 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a 100 (465)
+.++++|.++|-+|.+.... +..+--+|.+.+.+.|..++|++++..+.++.--+. ....-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 56789999999999885322 445556677888899999999999999887531111 12444566678889999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCCC
Q 012365 101 YSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQ 180 (465)
Q Consensus 101 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 180 (465)
+.+|..+.+.+ .--......|+..|-+..+|++|+++-+++...+-.+. +.-|.
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~----~~eIA--------------------- 180 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY----RVEIA--------------------- 180 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc----hhHHH---------------------
Confidence 99999998755 34566788899999999999999999998887643332 22221
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012365 181 ITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALI 259 (465)
Q Consensus 181 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 259 (465)
..|..|...+....+.+.|..++.+. ...++..- .--.+.......|+++.|.+.|+...+.+..--+.+...|.
T Consensus 181 ---qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR-Asi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~ 256 (389)
T COG2956 181 ---QFYCELAQQALASSDVDRARELLKKALQADKKCVR-ASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY 256 (389)
T ss_pred ---HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee-hhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 22344445555666777777777762 33333222 23445667778888888888888888877444456677788
Q ss_pred HHHHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCC
Q 012365 260 EHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPP 339 (465)
Q Consensus 260 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 339 (465)
.+|.+.|+.++...++..+.+....++....+...-......+.|...+.+-.. ..|....++.++..-+ ...+.|
T Consensus 257 ~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~-r~Pt~~gf~rl~~~~l---~daeeg 332 (389)
T COG2956 257 ECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLR-RKPTMRGFHRLMDYHL---ADAEEG 332 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHh-hCCcHHHHHHHHHhhh---cccccc
Confidence 888888888888888888776655555444333333344445555555544433 2366666666665333 233456
Q ss_pred chhhhHHhHHHHH
Q 012365 340 DVQIGLDLLQFIK 352 (465)
Q Consensus 340 ~~~~A~~~~~~m~ 352 (465)
...+.+..++.|.
T Consensus 333 ~~k~sL~~lr~mv 345 (389)
T COG2956 333 RAKESLDLLRDMV 345 (389)
T ss_pred chhhhHHHHHHHH
Confidence 6777777777777
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.53 E-value=2.7e-10 Score=105.90 Aligned_cols=306 Identities=11% Similarity=0.028 Sum_probs=178.1
Q ss_pred HHHHHHHHh--cccCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 012365 14 YKKLITYSC--DLLKVHVALDVVEQMVQGELVPSTE-TINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL 90 (465)
Q Consensus 14 y~~li~~~~--~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 90 (465)
+..+.+++. ..|+++.|.+.+....+.. |+.. .+-....+....|+.+.+.+.+....+..-.++....-.....
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 344444443 3688888888888776643 3332 2333445566778888888888887665312222334445677
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHH
Q 012365 91 NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY 170 (465)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 170 (465)
+...|+++.|...++.+.+.+ |-+...+..+...+...|++++|.+.+..+.+.++.++ ..+..+-.
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~-~~~~~l~~----------- 229 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD-EEFADLEQ----------- 229 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-HHHHHHHH-----------
Confidence 778888888888888888765 55677788888888888888888888888887754322 22211100
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCC
Q 012365 171 YEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNL 250 (465)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 250 (465)
..+..++..-......+...+.++......+.....+..+...+...|++++|.+++++..+.. |
T Consensus 230 -------------~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--p 294 (409)
T TIGR00540 230 -------------KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--G 294 (409)
T ss_pred -------------HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--C
Confidence 0011111111111122333333432111112233346777788888888888888888888765 4
Q ss_pred CHHHHH-HHHHH--HHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhH--HHHHH
Q 012365 251 EPRAVI-ALIEH--LNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEM--AMEYH 325 (465)
Q Consensus 251 ~~~~~~-~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 325 (465)
|..... .++.. ....++. +.+.+.++...+. .|+.. .....
T Consensus 295 d~~~~~~~~l~~~~~l~~~~~---------------------------------~~~~~~~e~~lk~-~p~~~~~~ll~s 340 (409)
T TIGR00540 295 DDRAISLPLCLPIPRLKPEDN---------------------------------EKLEKLIEKQAKN-VDDKPKCCINRA 340 (409)
T ss_pred CcccchhHHHHHhhhcCCCCh---------------------------------HHHHHHHHHHHHh-CCCChhHHHHHH
Confidence 433110 01111 1222333 3344444433332 12222 22222
Q ss_pred HHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHH
Q 012365 326 FSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYEN 389 (465)
Q Consensus 326 l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 389 (465)
+..++.. .|++++|.+.|+... .....|+...+..+...+.+.|+.++|.++|++...
T Consensus 341 Lg~l~~~-----~~~~~~A~~~le~a~-a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 341 LGQLLMK-----HGEFIEAADAFKNVA-ACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHH-----cccHHHHHHHHHHhH-HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2222222 377777777777533 335679888888999999999999999999998654
No 39
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.52 E-value=2.1e-10 Score=98.79 Aligned_cols=208 Identities=13% Similarity=0.091 Sum_probs=142.8
Q ss_pred HHHHHhc--ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhcc
Q 012365 17 LITYSCD--LLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKI 94 (465)
Q Consensus 17 li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 94 (465)
+..++.+ .|++..|+++..+-.+.+-.| ...|..-..+.-..|+.+.+-.++.+..+..-.++...+-+........
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 4444444 588999999888877766553 3344445566677889999999988888763356677777778888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHH
Q 012365 95 KDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQL 174 (465)
Q Consensus 95 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~ 174 (465)
|+.+.|..-++++...+ +.++........+|.+.|++.....++..|.+.|+--|...-.
T Consensus 167 ~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~------------------- 226 (400)
T COG3071 167 RDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR------------------- 226 (400)
T ss_pred CCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH-------------------
Confidence 99898888888888776 6677888888899999999999999999988887644432100
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCC
Q 012365 175 KSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLE 251 (465)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 251 (465)
....+|..+++-....+..+.-...+++.....+.....-.+++.-+.+.|+.++|.++..+..+++..|+
T Consensus 227 ------le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~ 297 (400)
T COG3071 227 ------LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR 297 (400)
T ss_pred ------HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence 01234444555444444555545555543333344333456677777788888888888887777775544
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.52 E-value=4.1e-14 Score=124.78 Aligned_cols=263 Identities=16% Similarity=0.191 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 012365 9 PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPS-TETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSM 87 (465)
Q Consensus 9 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 87 (465)
|+...+ .+-..+.+.|++++|+++++.......+|+ ...|..+...+...++++.|.+.++++.+.+ +-++..+..+
T Consensus 7 ~~~~~l-~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l 84 (280)
T PF13429_consen 7 PSEEAL-RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERL 84 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 443334 457777888999999999966554432344 4444444455666788999999999998876 3467777788
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHhhCCh--
Q 012365 88 ISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN-VKPDSQTFSYLIHNCSNE-- 164 (465)
Q Consensus 88 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~-- 164 (465)
+.. ...+++++|.++++..-+. .++...+..++..+...++++++.++++++.... .+++...|..+-..+.+.
T Consensus 85 ~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~ 161 (280)
T PF13429_consen 85 IQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD 161 (280)
T ss_dssp ------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH
T ss_pred ccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC
Confidence 877 7889999999888776544 3566777888888889999999999998877532 233444444443333333
Q ss_pred -hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 012365 165 -EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243 (465)
Q Consensus 165 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 243 (465)
..+.+.++...+... -|..+.+.++..+...|+.+++.++++......+.+...|..+..+|...|++++|+.+|++.
T Consensus 162 ~~~A~~~~~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 162 PDKALRDYRKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp HHHHHHHHHHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccc
Confidence 334445555544431 245566666666666777666666655422221111123566666666677777777777776
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHH
Q 012365 244 KEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278 (465)
Q Consensus 244 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 278 (465)
..... .|+.+...+..++...|+.++|..+.+++
T Consensus 241 ~~~~p-~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 241 LKLNP-DDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHST-T-HHHHHHHHHHHT---------------
T ss_pred ccccc-ccccccccccccccccccccccccccccc
Confidence 66541 25556666666666666666666665544
No 41
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.52 E-value=4.8e-09 Score=95.93 Aligned_cols=413 Identities=13% Similarity=0.066 Sum_probs=209.3
Q ss_pred CCCCHHHHHHHHHHHhcccCHHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-----
Q 012365 7 ITPSSASYKKLITYSCDLLKVHVALDVVEQM----VQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNL----- 77 (465)
Q Consensus 7 ~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m----~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----- 77 (465)
++.+...|-+-...=-.+|+.+...+++++- ...|+..+..-|-.=...|-..|..-....+....+..|+
T Consensus 436 iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~ 515 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDR 515 (913)
T ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchh
Confidence 4444455554444444555555555555543 2345555554444444444444444444444444444333
Q ss_pred -------------------------------CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012365 78 -------------------------------KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126 (465)
Q Consensus 78 -------------------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 126 (465)
+-+...|..+...--..|..+....+|++.... ++.....|-...+.+
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEK 594 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHH
Confidence 233344444444333444445555555444432 123333444444444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCCh---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 012365 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE---EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203 (465)
Q Consensus 127 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 203 (465)
-..|+...|..++.+..+..- -+...+-..+..-... +.+..++.... +..|+..+|.--++.....+..++|.
T Consensus 595 w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar--~~sgTeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKAR--SISGTERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHh--ccCCcchhhHHHhHHHHHhhhHHHHH
Confidence 455555555555555444321 1222232222222222 22222322222 23445555555555555555555555
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCcHHHHHHHHHHHcCCC
Q 012365 204 QVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRA-VIALIEHLNSEGELNRLIQLLEEVHDPD 282 (465)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 282 (465)
+++++.-...+.....|..+.+.+-+.++.+.|.+.|..-.+.- |+... |..|...=-+.|.+-+|..+++...-.+
T Consensus 672 rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c--P~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 672 RLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC--PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC--CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 55554222222323335555555555555555555554433321 33322 2223333344455556666665554444
Q ss_pred CCc-cchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcH
Q 012365 283 YWM-DGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSR 361 (465)
Q Consensus 283 ~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~ 361 (465)
+.. ..|...+..-.+.|+.+.|..+..+..+.++.+..-|..-|-- .++..+--...+.++ ...-|+
T Consensus 750 Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~l---------e~~~~rkTks~DALk---kce~dp 817 (913)
T KOG0495|consen 750 PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWL---------EPRPQRKTKSIDALK---KCEHDP 817 (913)
T ss_pred CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHh---------ccCcccchHHHHHHH---hccCCc
Confidence 332 2333344444456666666666655555444444444333210 011111112222222 344566
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCChhHHHHHHHh
Q 012365 362 KCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQACKQ 438 (465)
Q Consensus 362 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l~~~~~ 438 (465)
...-.+...+....+++.|++-|.+.++.+ +.+..+|..+...+.+.|.-++-.+++.+.....|++.....+.++
T Consensus 818 hVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 818 HVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 666677778888999999999999999874 7778899999999999999888899999888877766554444433
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=2.1e-11 Score=111.29 Aligned_cols=286 Identities=12% Similarity=0.037 Sum_probs=153.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHhhCChhHHHHHHHH
Q 012365 96 DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN--VKPDSQTFSYLIHNCSNEEDIIKYYEQ 173 (465)
Q Consensus 96 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~~~~~ 173 (465)
+..+|...|..+.+. +.-+......+..+|...+++++|.++|+..++.. ..-+..+|++.+-.+-+.-..--+-+.
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 457888888886554 23334556677889999999999999999988642 223455666666544332222223333
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHH
Q 012365 174 LKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPR 253 (465)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 253 (465)
+.+.. +-.+.+|.++.++|.-.++.+.|++.|++.-.-.+....+|+.+..-+.....+|.|...|+.......+ +..
T Consensus 413 Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYn 490 (638)
T KOG1126|consen 413 LIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYN 490 (638)
T ss_pred HHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhH
Confidence 33332 3345666666666666666677766666532222223334555555556666666666666665543211 122
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHcCCCCCcc-chhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHh
Q 012365 254 AVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD-GCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQ 332 (465)
Q Consensus 254 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 332 (465)
.|..+...|.+.++++.|+-.|+...+-++.-. ..+.+...+.+.|+.++|++++++.....+.+..+-+-
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~-------- 562 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH-------- 562 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH--------
Confidence 333444556666666666666666555332211 12233333444555555555555544432233222222
Q ss_pred hhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Q 012365 333 IATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNR 412 (465)
Q Consensus 333 ~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 412 (465)
....+...+++++|++.++++.+. +|.+...+..+...|.+.|+.
T Consensus 563 ----------------------------------~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 563 ----------------------------------RASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred ----------------------------------HHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccc
Confidence 223334445555555555555554 344444555555555555555
Q ss_pred hhHHHHHhccCCCCC
Q 012365 413 KSASKLLSKMPKDDP 427 (465)
Q Consensus 413 ~~A~~~~~~m~~~~~ 427 (465)
+.|..-|-=+...+|
T Consensus 608 ~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 608 DLALLHFSWALDLDP 622 (638)
T ss_pred hHHHHhhHHHhcCCC
Confidence 555555555554444
No 43
>PF13041 PPR_2: PPR repeat family
Probab=99.47 E-value=1.4e-13 Score=85.29 Aligned_cols=50 Identities=24% Similarity=0.394 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012365 9 PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEE 58 (465)
Q Consensus 9 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 58 (465)
||+.+||++|++|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 88889999999999999999999999999998999999999999888864
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=4.9e-09 Score=92.06 Aligned_cols=305 Identities=14% Similarity=0.117 Sum_probs=199.1
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-C-CCCHHHHHHHHHhhCChhH
Q 012365 89 SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN-V-KPDSQTFSYLIHNCSNEED 166 (465)
Q Consensus 89 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~-~p~~~~~~~ll~~~~~~~~ 166 (465)
.++-.....+++..-.+...+.|++.+...-+....+.-...++++|+.+|+++.+.. . .-|..+|+.++-.-.+...
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 3444556677777777788888876665555555556667789999999999998763 1 1256777777655333222
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 012365 167 IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245 (465)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 245 (465)
+--+-...... -+--+.|+..+.+-|.-.++.++|...|++ +...++... .|+.+..-|....+...|++-++...+
T Consensus 315 Ls~LA~~v~~i-dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~-aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 315 LSYLAQNVSNI-DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLS-AWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHHHHHHh-ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhH-HHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 22111111111 123345677777888888888999999987 344444443 588888888888888889988888888
Q ss_pred cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCC-CccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHH
Q 012365 246 AGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY-WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEY 324 (465)
Q Consensus 246 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 324 (465)
.+. -|...|-.|-++|.-.+...-|+-.|++.....+ ++..+..+..+|.+.++.++|++-|.+...
T Consensus 393 i~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~----------- 460 (559)
T KOG1155|consen 393 INP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL----------- 460 (559)
T ss_pred cCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh-----------
Confidence 763 3677788888888888888888888877766433 234455666666666666666666665544
Q ss_pred HHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHc----CC-CC-ChhH
Q 012365 325 HFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENA----GL-PY-NVLS 398 (465)
Q Consensus 325 ~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~-~p-~~~~ 398 (465)
.+ ..+...+..|.+.|-+.++.++|.+.|++-++. |. .| ...+
T Consensus 461 ------------------------------~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka 509 (559)
T KOG1155|consen 461 ------------------------------LG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKA 509 (559)
T ss_pred ------------------------------cc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHH
Confidence 11 124456777777888888888888877777652 22 22 2334
Q ss_pred HHHHHHHHHhcCChhhHHHHHhccCCCCCCh---hHHHHHHHh
Q 012365 399 YLWMYKAFLASGNRKSASKLLSKMPKDDPHV---RFVIQACKQ 438 (465)
Q Consensus 399 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~l~~~~~ 438 (465)
...|..-+.+.+++++|..+..+..+-++.- ..++.-|+.
T Consensus 510 ~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 510 RLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIRK 552 (559)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 4446666777888888888777776655432 455554443
No 45
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=2.9e-08 Score=87.57 Aligned_cols=393 Identities=12% Similarity=0.066 Sum_probs=187.9
Q ss_pred cccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 012365 23 DLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYS 102 (465)
Q Consensus 23 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 102 (465)
..+++..|..+|++.+.-... +...|...+..=.+.+.+..|..+++.....= +.-...|--.+.+=-..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHH
Confidence 456666777777776654322 33444444444445555555555555554431 1111222223333333455555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHh---hCChhHHHHH---------
Q 012365 103 LLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN---CSNEEDIIKY--------- 170 (465)
Q Consensus 103 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~---~~~~~~~~~~--------- 170 (465)
+|++..+- .|+...|++.|+.-.+-..++.|..+|+...- +.|+..+|.-.... ++..+.+..+
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 55554432 45555555555555555555555555555442 23444443332221 2222223333
Q ss_pred ----------------------------HHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH--------H-hcCC
Q 012365 171 ----------------------------YEQLKSAGGQI-TKYVFMALINAYTTCGEFEKARQVVL--------D-AEIP 212 (465)
Q Consensus 171 ----------------------------~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~--------~-~~~~ 212 (465)
++...+.-.+- ....|..+...--+.|+.....+..- . +...
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 33333321111 12333333333334444444333321 1 1222
Q ss_pred CCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCC-HHHH------HHHHHHH---HccCcHHHHHHHHHHHcCCC
Q 012365 213 VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLE-PRAV------IALIEHL---NSEGELNRLIQLLEEVHDPD 282 (465)
Q Consensus 213 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~------~~ll~~~---~~~g~~~~a~~~~~~~~~~~ 282 (465)
+.+-. +|--.+..--..|+.+...++|+.....- +|- ..-| .-+=-+| ....+++.+.++++...+
T Consensus 319 p~nYD-sWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-- 394 (677)
T KOG1915|consen 319 PYNYD-SWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-- 394 (677)
T ss_pred CCCch-HHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--
Confidence 22222 34445555555566666666666665432 221 1111 0010111 334556666666665554
Q ss_pred CCcc---chhhHhh----HhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhc
Q 012365 283 YWMD---GCCRLIL----HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDEL 355 (465)
Q Consensus 283 ~~~~---~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~ 355 (465)
+.|. +++.+-. .-.++.++..|.+++......+ |....+...|.--+.. ++++.+..++++..
T Consensus 395 lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~c-PK~KlFk~YIelElqL------~efDRcRkLYEkfl--- 464 (677)
T KOG1915|consen 395 LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKC-PKDKLFKGYIELELQL------REFDRCRKLYEKFL--- 464 (677)
T ss_pred hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccC-CchhHHHHHHHHHHHH------hhHHHHHHHHHHHH---
Confidence 2222 2222222 2235566666666666655533 3333333333322222 66777777777766
Q ss_pred CCCC-cHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCChhHHH
Q 012365 356 GLPP-SRKCLDFLLGACVNARDLKRAHLIWKEYENAG-LPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVI 433 (465)
Q Consensus 356 ~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l 433 (465)
...| +..+|......-...|+.+.|+.+|+-.++.. +......|...|+-=...|.++.|..++++++++...+..-+
T Consensus 465 e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWi 544 (677)
T KOG1915|consen 465 EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWI 544 (677)
T ss_pred hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHH
Confidence 4445 44566666666666777777777777776532 222333566666666677777777888877777776655444
Q ss_pred HH
Q 012365 434 QA 435 (465)
Q Consensus 434 ~~ 435 (465)
+.
T Consensus 545 sF 546 (677)
T KOG1915|consen 545 SF 546 (677)
T ss_pred hH
Confidence 43
No 46
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.45 E-value=4.7e-09 Score=99.49 Aligned_cols=349 Identities=13% Similarity=0.077 Sum_probs=214.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 012365 54 HACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133 (465)
Q Consensus 54 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 133 (465)
..+...|+.++|.+++.++++.. +.+...|..|...|-..|+.+++...+-.....+ +.|...|-.+-....+.|+++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence 33445599999999999988876 6678889999999999999998888775554443 567788888888889999999
Q ss_pred HHHHHHHHHHHCCCCCCHHH---HHHHHHhhCChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHH
Q 012365 134 GALMVLKEMEQANVKPDSQT---FSYLIHNCSNEEDIIKYYEQLKSAGGQITKY----VFMALINAYTTCGEFEKARQVV 206 (465)
Q Consensus 134 ~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~ 206 (465)
.|.-.|.+..+.. +++... ...+..-.+....+..-+..+.....+.|.. ..-.+++.+...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999888753 222221 1222222333444444444444443322222 2223345566666667777776
Q ss_pred HHhcC--CCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHH------HHHHHccCcHHHHHHHHHHH
Q 012365 207 LDAEI--PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL------IEHLNSEGELNRLIQLLEEV 278 (465)
Q Consensus 207 ~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l------l~~~~~~g~~~~a~~~~~~~ 278 (465)
+..-. ........++.++..|....+++.|......+......+|..-+.+- ..+++..|
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~------------ 371 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVG------------ 371 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCC------------
Confidence 65211 22222224677777777777777777777776665444554433110 00000000
Q ss_pred cCCCCCccch-hhHhhHhhhcCChhHHHHHHHHHHHcccch--hHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhc
Q 012365 279 HDPDYWMDGC-CRLILHCVRFKQLSSATDLLKQLKDKFKDD--EMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDEL 355 (465)
Q Consensus 279 ~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~ 355 (465)
.+..++.- ..+..+.......+....+.........+. ..-.+.-+..++.. .|++.+|+.+|..+. ..
T Consensus 372 --~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~-----~~~~~~Al~~l~~i~-~~ 443 (895)
T KOG2076|consen 372 --KELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTN-----IGKYKEALRLLSPIT-NR 443 (895)
T ss_pred --CCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHh-----cccHHHHHHHHHHHh-cC
Confidence 00111111 122222233333333333333333322122 22222222233333 488999999999888 44
Q ss_pred CCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCC
Q 012365 356 GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDD 426 (465)
Q Consensus 356 ~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 426 (465)
...-+...|--+..+|...|.++.|.+.++..+.. -|.+...-..|...|.+.|+.++|.+.++.+...|
T Consensus 444 ~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~-~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 444 EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL-APDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 44445778889999999999999999999999987 36777788888888999999999999999987555
No 47
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.43 E-value=2.3e-11 Score=114.29 Aligned_cols=340 Identities=11% Similarity=0.136 Sum_probs=203.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 012365 32 DVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMN 111 (465)
Q Consensus 32 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 111 (465)
.++..+...|+.|+..||..+|..||..|+.+.|- +|..|.-...+.+...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35667788999999999999999999999999999 9999988888889999999999999999988776
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHhhCChhHHH---HHHHHHH-HcCCCCCHHHH
Q 012365 112 LMPTASMYNAIMAGYFRKKDVQGALMVLKE-MEQANVKPDSQTFSYLIHNCSNEEDII---KYYEQLK-SAGGQITKYVF 186 (465)
Q Consensus 112 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-m~~~~~~p~~~~~~~ll~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~ 186 (465)
.|...+|+.|..+|...||+.. ++..++ |.. +...+...|-.. .++..+. ..+.-||..
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~------------i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~-- 143 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLES------------INQSFSDHGVGSPERWFLMKIHCCPHSLPDAE-- 143 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHHHHHH------------HHhhhhhhccCcHHHHHHhhcccCcccchhHH--
Confidence 5889999999999999999876 333333 221 111111111111 1111111 112233332
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 012365 187 MALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGR-TSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265 (465)
Q Consensus 187 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 265 (465)
..+.-..-.|.++.+.+++..+....... +...+++.+..... +++-........+ .|++.+|..++.+-.-+
T Consensus 144 -n~illlv~eglwaqllkll~~~Pvsa~~~--p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaa 217 (1088)
T KOG4318|consen 144 -NAILLLVLEGLWAQLLKLLAKVPVSAWNA--PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAA 217 (1088)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhCCcccccc--hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhc
Confidence 23444556677888888876432222221 12223444433332 2333333333333 49999999999999999
Q ss_pred CcHHHHHHHHHHHcCCCCCccch--hhHhhHhhhcCChhHHHHHHHHHHH-cccchhHHHHHHHHHHHHhhhcCCCCchh
Q 012365 266 GELNRLIQLLEEVHDPDYWMDGC--CRLILHCVRFKQLSSATDLLKQLKD-KFKDDEMAMEYHFSEIFCQIATTDPPDVQ 342 (465)
Q Consensus 266 g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 342 (465)
|+.+.|..++.+|.+.|+.+... ..++.+ .++..-++.+++.|.. +..|+..++...+...+. +|...
T Consensus 218 g~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~------N~~t~ 288 (1088)
T KOG4318|consen 218 GDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS------NGQTK 288 (1088)
T ss_pred CchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc------chhhh
Confidence 99999999999999999876532 222222 5666667777777776 355666665544443332 12211
Q ss_pred hhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhh-----hhhH--HHHH---HHHHHHcCCCCChhHHHHHHHHHHhcCCh
Q 012365 343 IGLDLLQFIKDELGLPPSRKCLDFLLGACVNAR-----DLKR--AHLI---WKEYENAGLPYNVLSYLWMYKAFLASGNR 412 (465)
Q Consensus 343 ~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g-----~~~~--A~~~---~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 412 (465)
.+ . ...|....+++-+.+-.-.| +++. +.-+ +++..=.|+.-...+|...+. ....|+-
T Consensus 289 ~~---------~-e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~ 357 (1088)
T KOG4318|consen 289 YG---------E-EGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKG 357 (1088)
T ss_pred hc---------c-cccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCC
Confidence 11 1 22233333333332222223 1111 1111 111112255555544443333 3447888
Q ss_pred hhHHHHHhccCC
Q 012365 413 KSASKLLSKMPK 424 (465)
Q Consensus 413 ~~A~~~~~~m~~ 424 (465)
++..++...+..
T Consensus 358 e~veqlvg~l~n 369 (1088)
T KOG4318|consen 358 EEVEQLVGQLLN 369 (1088)
T ss_pred chHHHHHhhhcC
Confidence 888888888874
No 48
>PF13041 PPR_2: PPR repeat family
Probab=99.43 E-value=5.2e-13 Score=82.75 Aligned_cols=50 Identities=34% Similarity=0.662 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCC
Q 012365 114 PTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163 (465)
Q Consensus 114 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 163 (465)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666543
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=2e-09 Score=92.89 Aligned_cols=282 Identities=14% Similarity=0.087 Sum_probs=194.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHH
Q 012365 95 KDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQL 174 (465)
Q Consensus 95 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~ 174 (465)
|++..|+++..+-.+.+ +.....|..-..+.-+.|+.+.+-.++.+..+
T Consensus 98 G~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae------------------------------ 146 (400)
T COG3071 98 GDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAE------------------------------ 146 (400)
T ss_pred CcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhc------------------------------
Confidence 55566665555544443 22233344444445555555555555555443
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHH
Q 012365 175 KSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPR 253 (465)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 253 (465)
..-.++..+.-+........|+.+.|..-+++ ..+.+.++. .......+|.+.|++..+..++..|.+.|.--|+.
T Consensus 147 --~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~-vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e 223 (400)
T COG3071 147 --LAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPE-VLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEE 223 (400)
T ss_pred --cCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChH-HHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHH
Confidence 22234555566666777888888888888777 345555554 37888899999999999999999999988655543
Q ss_pred -------HHHHHHHHHHccCcHHHHHHHHHHHcCCC-CCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHH
Q 012365 254 -------AVIALIEHLNSEGELNRLIQLLEEVHDPD-YWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYH 325 (465)
Q Consensus 254 -------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 325 (465)
++..+++-....+..+.-...|+.....- ..|.....++..+.++|+.++|.++.++..++.-.+.
T Consensus 224 ~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~------ 297 (400)
T COG3071 224 AARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR------ 297 (400)
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh------
Confidence 45666666666666666666777765432 3355566777778899999999999888777433333
Q ss_pred HHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 012365 326 FSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKA 405 (465)
Q Consensus 326 l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 405 (465)
+..++ .+...++.+.-++..++-....+..| ..+.+|...|.+.+.+.+|...|+...+ ..|+..+|+.+.++
T Consensus 298 L~~~~---~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~ 370 (400)
T COG3071 298 LCRLI---PRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADA 370 (400)
T ss_pred HHHHH---hhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHH
Confidence 22222 22234666666666655552344444 6778899999999999999999998777 58999999999999
Q ss_pred HHhcCChhhHHHHHhccC
Q 012365 406 FLASGNRKSASKLLSKMP 423 (465)
Q Consensus 406 ~~~~g~~~~A~~~~~~m~ 423 (465)
|.+.|+..+|.+..++.+
T Consensus 371 ~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 371 LDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHcCChHHHHHHHHHHH
Confidence 999999999999998865
No 50
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=1.2e-07 Score=83.74 Aligned_cols=379 Identities=11% Similarity=0.077 Sum_probs=239.5
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 012365 11 SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL 90 (465)
Q Consensus 11 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 90 (465)
...|--.+..=.++..+..|..++++....-+..|. .|-..+..=-..|++..|.++|+.-.+- .|+...|++.|..
T Consensus 107 itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~f 183 (677)
T KOG1915|consen 107 ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKF 183 (677)
T ss_pred chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHH
Confidence 344445555556666777777777776654222222 2222333333456777777777766554 5777777777777
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-----------------------
Q 012365 91 NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA-N----------------------- 146 (465)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~----------------------- 146 (465)
=.+...++.|..++++..-. .|++.+|-.....--+.|+...|..+|+...+. |
T Consensus 184 ElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~E 261 (677)
T KOG1915|consen 184 ELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYE 261 (677)
T ss_pred HHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776643 477777766666666666666666666555431 1
Q ss_pred ------------CCCC--HHHHHHHHH---hhCChhHHHH--------HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 012365 147 ------------VKPD--SQTFSYLIH---NCSNEEDIIK--------YYEQLKSAGGQITKYVFMALINAYTTCGEFEK 201 (465)
Q Consensus 147 ------------~~p~--~~~~~~ll~---~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 201 (465)
++.+ ...|..... -++....++. -++.+.+.+ +.|-.+|--.+..--..|+.+.
T Consensus 262 Rar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~ 340 (677)
T KOG1915|consen 262 RARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDR 340 (677)
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHH
Confidence 1111 111111111 1221111111 111222221 3345566677777778899999
Q ss_pred HHHHHHHhcCCCCChHH--HHHHHHH--------HHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HccCc
Q 012365 202 ARQVVLDAEIPVKSRSE--VKSALVS--------ALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL----NSEGE 267 (465)
Q Consensus 202 a~~~~~~~~~~~~~~~~--~~~~l~~--------~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~g~ 267 (465)
..++|++.-...+|... .|...|- .=....+++.+.+++....+- ++....||..+=-.| .++.+
T Consensus 341 Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~ 419 (677)
T KOG1915|consen 341 IRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLN 419 (677)
T ss_pred HHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcc
Confidence 99999985444444332 2322221 123467899999999998882 334456665443333 56788
Q ss_pred HHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHh
Q 012365 268 LNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDL 347 (465)
Q Consensus 268 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~ 347 (465)
+..|.+++......-+....+-..|..-.+.++++....++++..+-.+.+..+|.-. ..+-.. -|+.+.|..+
T Consensus 420 l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ky-aElE~~-----LgdtdRaRai 493 (677)
T KOG1915|consen 420 LTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKY-AELETS-----LGDTDRARAI 493 (677)
T ss_pred cHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHH-HHHHHH-----hhhHHHHHHH
Confidence 9999999999988777766676667766789999999999999999666666666543 222222 3999999999
Q ss_pred HHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 012365 348 LQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYK 404 (465)
Q Consensus 348 ~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 404 (465)
|+-..++.....-...|...|+--...|.++.|+.+++.+.+. .+.+.+|-++..
T Consensus 494 felAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~ 548 (677)
T KOG1915|consen 494 FELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAK 548 (677)
T ss_pred HHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHH
Confidence 9998833334444567888888888899999999999999986 456667777765
No 51
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=3.3e-10 Score=103.69 Aligned_cols=303 Identities=14% Similarity=0.128 Sum_probs=174.5
Q ss_pred cccCCCCCHHHHHHHHHHHhc------ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 012365 3 AKLEITPSSASYKKLITYSCD------LLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHN 76 (465)
Q Consensus 3 ~~~~~~p~~~~y~~li~~~~~------~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 76 (465)
+.++++-+....-.+++.+.. .=+.++|+..|+...+. +.-+......+.++|...+++++++++|+.+.+..
T Consensus 305 ~~~~l~~~~~~l~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~ 383 (638)
T KOG1126|consen 305 QSFGLKDDASELMELLRGLGEGYRSLSQYNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIE 383 (638)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555553333333333332 23578899999986554 33344666678889999999999999999998753
Q ss_pred --CCCCHHHHHHHHHHHhccCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 012365 77 --LKPNSETFRSMISLNVKIKDFDSAYSLL-DDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQT 153 (465)
Q Consensus 77 --~~~~~~~~~~li~~~~~~g~~~~a~~~~-~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 153 (465)
..-+..+|++.+--+-+. -+...+ +.+.+.. +-.+.+|-++.++|.-+++++.|++.|++..+. .|+
T Consensus 384 p~rv~~meiyST~LWHLq~~----v~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~--- 453 (638)
T KOG1126|consen 384 PYRVKGMEIYSTTLWHLQDE----VALSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPR--- 453 (638)
T ss_pred cccccchhHHHHHHHHHHhh----HHHHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCc---
Confidence 123677888887654332 222222 3333333 457789999999999999999999999998763 331
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHcCCC
Q 012365 154 FSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGR 232 (465)
Q Consensus 154 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~ 232 (465)
...+|+.+-+-+.....+|.|...|+. +...++... .|.-+...|.+.++
T Consensus 454 ----------------------------faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYn-AwYGlG~vy~Kqek 504 (638)
T KOG1126|consen 454 ----------------------------FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYN-AWYGLGTVYLKQEK 504 (638)
T ss_pred ----------------------------cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhH-HHHhhhhheeccch
Confidence 233344444444445555555555554 233333322 24445555666666
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCC-ccchhhHhhHhhhcCChhHHHHHHHHH
Q 012365 233 TSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW-MDGCCRLILHCVRFKQLSSATDLLKQL 311 (465)
Q Consensus 233 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~ 311 (465)
++.|.-.|....+-+.. +......+...+.+.|+.|+|+.++++....+.. +-.....+..+...+++++|+..++++
T Consensus 505 ~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeL 583 (638)
T KOG1126|consen 505 LEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEEL 583 (638)
T ss_pred hhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHH
Confidence 66666666655554411 2333444455555566666666666655443322 222233333334556666666666666
Q ss_pred HHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHH
Q 012365 312 KDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIK 352 (465)
Q Consensus 312 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~ 352 (465)
++ ..|+......++...+..+ |+.+.|+.-|--+.
T Consensus 584 k~-~vP~es~v~~llgki~k~~-----~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 584 KE-LVPQESSVFALLGKIYKRL-----GNTDLALLHFSWAL 618 (638)
T ss_pred HH-hCcchHHHHHHHHHHHHHH-----ccchHHHHhhHHHh
Confidence 55 3345555555555545443 55566665555555
No 52
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.39 E-value=1.9e-09 Score=94.33 Aligned_cols=383 Identities=10% Similarity=0.091 Sum_probs=230.4
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC------------CCCH
Q 012365 14 YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNL------------KPNS 81 (465)
Q Consensus 14 y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------------~~~~ 81 (465)
.+.+--.+.+.|+++.|+..|+...+. .|+..+--.|+-++..-|+.++..+.|..|..... .|+.
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 344444567778888888888877764 46665555555555567788888888888775322 2233
Q ss_pred HHHHHHHH-----HHhccC--CHHHHHHHHHHHHHcCCCCCHHH---H----------H--------HHHHHHHhcCCHH
Q 012365 82 ETFRSMIS-----LNVKIK--DFDSAYSLLDDLKEMNLMPTASM---Y----------N--------AIMAGYFRKKDVQ 133 (465)
Q Consensus 82 ~~~~~li~-----~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~---~----------~--------~li~~~~~~g~~~ 133 (465)
...+..|. -.-+.. +.+++.-.--+++.--+.|+-.. | . .-...+.++|+++
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIE 436 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHH
Confidence 33332222 111111 11112111112222112222110 0 0 1123467889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHH--HHHhh---CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012365 134 GALMVLKEMEQANVKPDSQTFSY--LIHNC---SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208 (465)
Q Consensus 134 ~a~~~~~~m~~~~~~p~~~~~~~--ll~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 208 (465)
.|.++++-....+-+.....-+. ++.-. .+..++.++-+...... ..+......--+.....|++++|.+.+++
T Consensus 437 ~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 437 GAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 99999988875533222221111 11111 12223333333322211 11222222222334567899999999987
Q ss_pred hcCCCCChHH-HHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCC-CCcc
Q 012365 209 AEIPVKSRSE-VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPD-YWMD 286 (465)
Q Consensus 209 ~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~ 286 (465)
.......-.. .|| +.-.+-..|+.++|++.|-.+..-- .-+......+...|....+...|.+++.+....- ..|.
T Consensus 516 al~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ 593 (840)
T KOG2003|consen 516 ALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPA 593 (840)
T ss_pred HHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHH
Confidence 4333322222 243 3334567799999999998875432 2356677788888988899999999998876543 3455
Q ss_pred chhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHH
Q 012365 287 GCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDF 366 (465)
Q Consensus 287 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ 366 (465)
..+.+...|-+.|+-..|.+.+-.--. ..|........+..++-. ..-+++|+..|++.. -+.|+..-|..
T Consensus 594 ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyid-----tqf~ekai~y~ekaa---liqp~~~kwql 664 (840)
T KOG2003|consen 594 ILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYID-----TQFSEKAINYFEKAA---LIQPNQSKWQL 664 (840)
T ss_pred HHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHh-----hHHHHHHHHHHHHHH---hcCccHHHHHH
Confidence 677888889999999988887654433 223333333334443333 366889999999887 78999999998
Q ss_pred HHHHhH-hhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 012365 367 LLGACV-NARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGN 411 (465)
Q Consensus 367 ll~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 411 (465)
++..|. +.|++.+|..++++..+. +|.|...+..|++.+...|-
T Consensus 665 miasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 665 MIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 887655 579999999999999876 89999999999998776663
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=6e-09 Score=92.11 Aligned_cols=418 Identities=13% Similarity=0.060 Sum_probs=250.8
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHH
Q 012365 14 YKKLITYSCDLLKVHVALDVVEQMVQGELVPS-TETINSILHACEESYEFNLVRRIYPMICHHNLKPN-SETFRSMISLN 91 (465)
Q Consensus 14 y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~ 91 (465)
+...-.-|.++|.+++|++.|.+..+. .|| +..|.....+|...|+|+++.+--...++.+ |+ ...+..-.+++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 334455677888999999999988874 566 6677777778888899988887777666653 44 44566666666
Q ss_pred hccCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHH--CCCCCCHHHHHHHHHhhCC----
Q 012365 92 VKIKDFDSAYSLLDDLK-EMNLMPTASMYNAIMAGYFRKKDVQGALMVLKE-MEQ--ANVKPDSQTFSYLIHNCSN---- 163 (465)
Q Consensus 92 ~~~g~~~~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-m~~--~~~~p~~~~~~~ll~~~~~---- 163 (465)
-..|++++|+.=..-.. -.|+ .|..+--.+=+.+-+ .|.+..++ |.+ ..+.|+.....+....+..
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F-~n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~ 267 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGF-QNASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKP 267 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhc-ccchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccc
Confidence 67777776643211111 1111 011110000011111 11111111 221 2245666555555544311
Q ss_pred -----h--hH-----------------HHHHHHHHHHc----CCCC-----C------HHHHHHHHHHHHhcCCHHHHHH
Q 012365 164 -----E--ED-----------------IIKYYEQLKSA----GGQI-----T------KYVFMALINAYTTCGEFEKARQ 204 (465)
Q Consensus 164 -----~--~~-----------------~~~~~~~~~~~----~~~~-----~------~~~~~~l~~~~~~~g~~~~a~~ 204 (465)
. .+ .....+.+.+. ...+ | ..+...-...+.-.|+.-.|..
T Consensus 268 ~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~ 347 (606)
T KOG0547|consen 268 LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQE 347 (606)
T ss_pred cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhh
Confidence 0 01 01112222211 0111 1 1111111233455688888888
Q ss_pred HHHH-hcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCC
Q 012365 205 VVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY 283 (465)
Q Consensus 205 ~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 283 (465)
-|+. +...+.+... |--+...|....+.++-+..|++..+-+. -++.+|..=-+...-.+++++|..=|++.+...+
T Consensus 348 d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p 425 (606)
T KOG0547|consen 348 DFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP 425 (606)
T ss_pred hHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh
Confidence 8887 4444544443 77788899999999999999999988763 2567777777777778899999999998876443
Q ss_pred C-ccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCc--
Q 012365 284 W-MDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS-- 360 (465)
Q Consensus 284 ~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~-- 360 (465)
. .-.+..+.-+.-+.+.+++++..|++..++.+.-... ++++...+.. +++++.|.+.|+... .+.|+
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Ev-y~~fAeiLtD-----qqqFd~A~k~YD~ai---~LE~~~~ 496 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEV-YNLFAEILTD-----QQQFDKAVKQYDKAI---ELEPREH 496 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchH-HHHHHHHHhh-----HHhHHHHHHHHHHHH---hhccccc
Confidence 2 1122222223337889999999999999865443333 3344444443 599999999999988 33343
Q ss_pred -------HHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCChhHHH
Q 012365 361 -------RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVI 433 (465)
Q Consensus 361 -------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l 433 (465)
+..-..++-.-. .+++..|..++++..+.. |-....|..|...-...|+.++|+++|++....--+-..++
T Consensus 497 ~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E~~ 574 (606)
T KOG0547|consen 497 LIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTESEMV 574 (606)
T ss_pred cccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 222233332222 389999999999999863 44455899999999999999999999998765444445555
Q ss_pred HHHHhh---ccccchhhhcCCCCC
Q 012365 434 QACKQT---YTIPSLQKERGFEKD 454 (465)
Q Consensus 434 ~~~~~~---~~~~~~~~~~~~~pd 454 (465)
.++..+ .+...-.++.|..|.
T Consensus 575 ~a~s~aeAAraq~~vtkK~~~~~~ 598 (606)
T KOG0547|consen 575 HAYSLAEAARAQIAVTKKYGLTLA 598 (606)
T ss_pred HHHHHHHHHhhhHHHHHHhcccHH
Confidence 554443 333344455555443
No 54
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.4e-08 Score=89.19 Aligned_cols=242 Identities=12% Similarity=0.046 Sum_probs=174.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCC---ChHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 012365 169 KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVK---SRSEVKSALVSALASHGRTSDAIIVYEEIKE 245 (465)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 245 (465)
+-.+.+...|++.+...-+....+.-...++++|+.+|+++....+ ++..+|+.++-. ++.+ ..+.++-+-.-
T Consensus 248 ~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~--skLs~LA~~v~ 323 (559)
T KOG1155|consen 248 QKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDK--SKLSYLAQNVS 323 (559)
T ss_pred HHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhhh--HHHHHHHHHHH
Confidence 3344555667666666555556666777889999999987433321 122245544432 2221 11222221111
Q ss_pred cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCC-ccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHH
Q 012365 246 AGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW-MDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEY 324 (465)
Q Consensus 246 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 324 (465)
.--+--+.|...+.+-|+-.++.++|...|+...+.++. ...+..+..-|....+...|++-+++..+-.+.|...|+.
T Consensus 324 ~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYG 403 (559)
T KOG1155|consen 324 NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYG 403 (559)
T ss_pred HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhh
Confidence 111233566667778888889999999999999887765 4466778888999999999999999999988888888887
Q ss_pred HHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCC-cHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHH
Q 012365 325 HFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPP-SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMY 403 (465)
Q Consensus 325 ~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 403 (465)
+-..+ ..+ +...-|+-.|++.. ..+| |+..|.+|..+|.+.++.++|...|......| ..+...+..|.
T Consensus 404 LGQaY-eim-----~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~La 473 (559)
T KOG1155|consen 404 LGQAY-EIM-----KMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLA 473 (559)
T ss_pred hhHHH-HHh-----cchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHH
Confidence 65543 332 77788888888887 6677 77899999999999999999999999999876 44678899999
Q ss_pred HHHHhcCChhhHHHHHhccCC
Q 012365 404 KAFLASGNRKSASKLLSKMPK 424 (465)
Q Consensus 404 ~~~~~~g~~~~A~~~~~~m~~ 424 (465)
+.|.+.++.++|...+++..+
T Consensus 474 kLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 474 KLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999988765
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.36 E-value=1.1e-09 Score=94.13 Aligned_cols=202 Identities=10% Similarity=0.070 Sum_probs=147.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012365 45 STETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124 (465)
Q Consensus 45 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 124 (465)
....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++....+ +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 35667777788888899999999988887764 4457778888888888899999999998887664 456677788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012365 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204 (465)
Q Consensus 125 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 204 (465)
.+...|++++|.+.|++....... ......+..+...+...|++++|.+
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~-------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLY-------------------------------PQPARSLENAGLCALKAGDFDKAEK 156 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhcccc-------------------------------ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 888889999999888887653111 1122334455667788888888888
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcC
Q 012365 205 VVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280 (465)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 280 (465)
.+++.....+.....+..+...+...|++++|...+++..+.. +.++..+..+...+...|+.++|..+.+.+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 157 YLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 8887332222233347778888888899999998888887762 34566666777777788888888877766543
No 56
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.35 E-value=2.5e-09 Score=89.59 Aligned_cols=257 Identities=15% Similarity=0.142 Sum_probs=111.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012365 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208 (465)
Q Consensus 129 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 208 (465)
+.+.++|.+.|-+|.+. |..|| .+--+|-+.|.+.|..|.|+++.+.
T Consensus 48 s~Q~dKAvdlF~e~l~~----d~~t~-----------------------------e~~ltLGnLfRsRGEvDRAIRiHQ~ 94 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE----DPETF-----------------------------EAHLTLGNLFRSRGEVDRAIRIHQT 94 (389)
T ss_pred hcCcchHHHHHHHHHhc----Cchhh-----------------------------HHHHHHHHHHHhcchHHHHHHHHHH
Confidence 46788888888888763 22221 1222334444445555555555443
Q ss_pred hcCCCCChHH----HHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCC
Q 012365 209 AEIPVKSRSE----VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW 284 (465)
Q Consensus 209 ~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 284 (465)
+...+.-+.. ..-.|..-|...|-+|.|..+|..+.+.+. .-......|+..|-...+|++|+++-+++.+.+..
T Consensus 95 L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q 173 (389)
T COG2956 95 LLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ 173 (389)
T ss_pred HhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc
Confidence 2222221111 122233344444555555555555544331 12333444455555555555555554444433322
Q ss_pred cc------chhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCC
Q 012365 285 MD------GCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLP 358 (465)
Q Consensus 285 ~~------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~ 358 (465)
.. .|+-+...+.-..+.+.|..++.+..+. .|..+..+.++..+... .|+++.|.+.++.+. +....
T Consensus 174 ~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa-~~~cvRAsi~lG~v~~~-----~g~y~~AV~~~e~v~-eQn~~ 246 (389)
T COG2956 174 TYRVEIAQFYCELAQQALASSDVDRARELLKKALQA-DKKCVRASIILGRVELA-----KGDYQKAVEALERVL-EQNPE 246 (389)
T ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh-CccceehhhhhhHHHHh-----ccchHHHHHHHHHHH-HhChH
Confidence 11 1223333333344455555555544441 12222222222222222 355555555555555 33333
Q ss_pred CcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCC
Q 012365 359 PSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPH 428 (465)
Q Consensus 359 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 428 (465)
--+.+...|..+|...|+.++....+..+.+. .+....-..+...-....-.+.|..++.+-+.+.|+
T Consensus 247 yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt 314 (389)
T COG2956 247 YLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPT 314 (389)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc
Confidence 33344445555555555555555555555543 233333333333333333344444444444444443
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.32 E-value=2.9e-09 Score=91.40 Aligned_cols=203 Identities=11% Similarity=0.072 Sum_probs=159.2
Q ss_pred CCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 012365 9 PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88 (465)
Q Consensus 9 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 88 (465)
.....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 346778888999999999999999999998764 3357788888889999999999999999998875 45677888899
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHH
Q 012365 89 SLNVKIKDFDSAYSLLDDLKEMNL-MPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI 167 (465)
Q Consensus 89 ~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 167 (465)
..+...|++++|...|++...... +.....+..+...+...|++++|...+.+..+.. |+
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~----------------- 167 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQ----------------- 167 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cC-----------------
Confidence 999999999999999999886421 2345567778888999999999999999987542 21
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHc
Q 012365 168 IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA 246 (465)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 246 (465)
+...+..+...+...|++++|.+.+++.....+.....+..+...+...|+.++|..+++.+...
T Consensus 168 --------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 168 --------------RPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred --------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 23345566777888899999999888732222233334567778888889999999888877653
No 58
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.32 E-value=3e-07 Score=86.18 Aligned_cols=289 Identities=14% Similarity=0.101 Sum_probs=197.6
Q ss_pred HHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhcc--
Q 012365 17 LITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKI-- 94 (465)
Q Consensus 17 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 94 (465)
....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+.+ +.|..-|..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcc
Confidence 345567889999999999875543 33234455566777899999999999999999997 45566666666666333
Q ss_pred ---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhH---H
Q 012365 95 ---KDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV-QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---I 167 (465)
Q Consensus 95 ---g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---~ 167 (465)
.+.+....+++++...- |.......+.-.+..-..+ ..+...+..+...|+++ +|+.+-..|..... +
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence 35677888999887653 4444433333333322223 34556667777788654 34444444444322 3
Q ss_pred HHHHHHHHH----cC----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC
Q 012365 168 IKYYEQLKS----AG----------GQITK--YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHG 231 (465)
Q Consensus 168 ~~~~~~~~~----~~----------~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 231 (465)
.+++..... .+ -.|+. .++.-+...|...|++++|++.+++.-...+..+..|..-...|-..|
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC
Confidence 334433332 11 12333 344566788889999999999999743333333445888999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCccc--------h--hhHhhHhhhcCCh
Q 012365 232 RTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDG--------C--CRLILHCVRFKQL 301 (465)
Q Consensus 232 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--------~--~~~~~~~~~~~~~ 301 (465)
++.+|.+.++....... -|...=+.....+.++|++++|.+++....+.+..+.. | .....+|.+.|++
T Consensus 243 ~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999998774 36666677788889999999999999999887743321 1 2345567899999
Q ss_pred hHHHHHHHHHHH
Q 012365 302 SSATDLLKQLKD 313 (465)
Q Consensus 302 ~~a~~~~~~~~~ 313 (465)
..|++-|..+.+
T Consensus 322 ~~ALk~~~~v~k 333 (517)
T PF12569_consen 322 GLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHH
Confidence 999988776655
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.29 E-value=9.7e-09 Score=99.26 Aligned_cols=133 Identities=11% Similarity=0.033 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHhc-----ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---------hcCCHHHHHHHHHHHhhC
Q 012365 10 SSASYKKLITYSCD-----LLKVHVALDVVEQMVQGELVPSTETINSILHACE---------ESYEFNLVRRIYPMICHH 75 (465)
Q Consensus 10 ~~~~y~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~ 75 (465)
+...|...+.+... .+++++|+++|++..+.... +...|..+..++. ..+++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 34445555554321 23456777777776664322 3344444433332 123466777777776665
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 012365 76 NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145 (465)
Q Consensus 76 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 145 (465)
. +-+...+..+...+...|++++|...|++..+.+ |.+...|..+...+...|++++|...+++..+.
T Consensus 334 d-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l 401 (553)
T PRK12370 334 D-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL 401 (553)
T ss_pred C-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4 4456666666666667777777777777766654 444556666666777777777777777776654
No 60
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=4.5e-08 Score=88.30 Aligned_cols=211 Identities=13% Similarity=0.008 Sum_probs=128.9
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHcCCCC-CccchhhHhhHhh
Q 012365 219 VKSALVSALASHGRTSDAIIVYEEIKEAGCNLE-PRAVIALIEHLNSEGELNRLIQLLEEVHDPDY-WMDGCCRLILHCV 296 (465)
Q Consensus 219 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~ 296 (465)
+|-++..-|...|+.++|.++|.+....+ |. ...|..+-++|.-.|..|.|...+....+.-. .--.+..+..-|.
T Consensus 314 sW~aVg~YYl~i~k~seARry~SKat~lD--~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~ 391 (611)
T KOG1173|consen 314 SWFAVGCYYLMIGKYSEARRYFSKATTLD--PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYM 391 (611)
T ss_pred chhhHHHHHHHhcCcHHHHHHHHHHhhcC--ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHH
Confidence 35555555555555555555555544432 21 23344455555555555555555544332110 0112233444555
Q ss_pred hcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhh-cCC---CC-cHHHHHHHHHHh
Q 012365 297 RFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDE-LGL---PP-SRKCLDFLLGAC 371 (465)
Q Consensus 297 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~-~~~---~p-~~~~~~~ll~~~ 371 (465)
+.++...|.++|.......+.+....+.+-.-++.. +.+.+|..+|+..... ..+ .+ -..+++.|.++|
T Consensus 392 ~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~------~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 392 RTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTY------EEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred HhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehH------hhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 666666666666666554444444433332222222 5666666666655410 011 11 234678899999
Q ss_pred HhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCCh---hHHHHHHHh
Q 012365 372 VNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHV---RFVIQACKQ 438 (465)
Q Consensus 372 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~l~~~~~ 438 (465)
.+.+.+++|...+++.... .|.|..++.++.-.|...|+++.|...|.+.+...|.. ..+|+.+..
T Consensus 466 Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 9999999999999999987 58899999999999999999999999999998877743 556665544
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.24 E-value=2.3e-08 Score=96.66 Aligned_cols=94 Identities=15% Similarity=0.046 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Q 012365 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP-RAVIALIEHL 262 (465)
Q Consensus 184 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~ 262 (465)
..+..+...+...|++++|...|++.-...++....+..+...+...|++++|...+++..+.+ |+. ..+..+...+
T Consensus 339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~ 416 (553)
T PRK12370 339 QALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWIT 416 (553)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHH
Confidence 3344444445555556666655555222222222235555555666666666666666665544 221 1222233334
Q ss_pred HccCcHHHHHHHHHHHc
Q 012365 263 NSEGELNRLIQLLEEVH 279 (465)
Q Consensus 263 ~~~g~~~~a~~~~~~~~ 279 (465)
...|++++|...+++..
T Consensus 417 ~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 417 YYHTGIDDAIRLGDELR 433 (553)
T ss_pred HhccCHHHHHHHHHHHH
Confidence 44556666666665554
No 62
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=3.9e-07 Score=82.83 Aligned_cols=395 Identities=14% Similarity=0.147 Sum_probs=223.8
Q ss_pred HHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH--HHHHH--h
Q 012365 17 LITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS--MISLN--V 92 (465)
Q Consensus 17 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~--~ 92 (465)
=++.+.+.|++++|.+....+...+ +-|...+..=+-++...+++++|+.+.+. .+ -..+++. +=.+| .
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~---~~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NG---ALLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cc---hhhhcchhhHHHHHHHH
Confidence 4567788999999999999999876 44666777777788899999999966543 22 1112222 23334 4
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHhhCChhHHHHHH
Q 012365 93 KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP-DSQTFSYLIHNCSNEEDIIKYY 171 (465)
Q Consensus 93 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~ 171 (465)
+.+..++|...++-.. +-+..+...-...+.+.|++++|+.+|+.+.+.+..- +...-..++.+- .....
T Consensus 91 rlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l~~- 161 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AALQV- 161 (652)
T ss_pred HcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----HhhhH-
Confidence 6789999999988222 2233466666677889999999999999998765422 111111222211 11111
Q ss_pred HHHHHcCCCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHh--------cCCCCChHH-------HHHHHHHHHHcCCCh
Q 012365 172 EQLKSAGGQITKYVFMALI---NAYTTCGEFEKARQVVLDA--------EIPVKSRSE-------VKSALVSALASHGRT 233 (465)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~a~~~~~~~--------~~~~~~~~~-------~~~~l~~~~~~~g~~ 233 (465)
+.+......| ..+|..+. -.+...|++.+|+++++.. ......... +-..+.-.+...|+.
T Consensus 162 ~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 162 QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 1233333333 33444443 3456789999999999753 222222111 123455667789999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHH---HHHHccC--------------------------------------------
Q 012365 234 SDAIIVYEEIKEAGCNLEPRAVIALI---EHLNSEG-------------------------------------------- 266 (465)
Q Consensus 234 ~~a~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~g-------------------------------------------- 266 (465)
++|..++......+. +|........ .++..-.
T Consensus 241 ~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888764 3432211111 1111110
Q ss_pred --cHHHHHHHHHHHcCCCCCccchh-hHhh-Hh-hhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCch
Q 012365 267 --ELNRLIQLLEEVHDPDYWMDGCC-RLIL-HC-VRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDV 341 (465)
Q Consensus 267 --~~~~a~~~~~~~~~~~~~~~~~~-~~~~-~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 341 (465)
..+.+.++...+. +..|.... .++. ++ .+...+..+..++....+..+......-.+...+ . ...|++
T Consensus 320 tnk~~q~r~~~a~lp--~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl-~----is~gn~ 392 (652)
T KOG2376|consen 320 TNKMDQVRELSASLP--GMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQL-K----ISQGNP 392 (652)
T ss_pred hhhHHHHHHHHHhCC--ccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHH-H----HhcCCH
Confidence 0111111111110 11122221 2222 22 1222466777777776664333312211111111 1 125999
Q ss_pred hhhHHhHH--------HHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHc--CCCCChh----HHHHHHHHHH
Q 012365 342 QIGLDLLQ--------FIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENA--GLPYNVL----SYLWMYKAFL 407 (465)
Q Consensus 342 ~~A~~~~~--------~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~----~~~~l~~~~~ 407 (465)
+.|++++. .+. ..+..|-. ...+...+.+.++-+.|-.++.+.... .-.+... ++..+...-.
T Consensus 393 ~~A~~il~~~~~~~~ss~~-~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~l 469 (652)
T KOG2376|consen 393 EVALEILSLFLESWKSSIL-EAKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKL 469 (652)
T ss_pred HHHHHHHHHHhhhhhhhhh-hhccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHH
Confidence 99999999 565 45555554 445666677888888888888777642 1122223 3334444456
Q ss_pred hcCChhhHHHHHhccCCCCCChhHHHHHHHhh
Q 012365 408 ASGNRKSASKLLSKMPKDDPHVRFVIQACKQT 439 (465)
Q Consensus 408 ~~g~~~~A~~~~~~m~~~~~~~~~~l~~~~~~ 439 (465)
+.|+-++|..+++++.+-++.-..++.-...+
T Consensus 470 r~G~~~ea~s~leel~k~n~~d~~~l~~lV~a 501 (652)
T KOG2376|consen 470 RHGNEEEASSLLEELVKFNPNDTDLLVQLVTA 501 (652)
T ss_pred hcCchHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 78999999999999999777544444333333
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.22 E-value=1.9e-08 Score=92.95 Aligned_cols=251 Identities=17% Similarity=0.147 Sum_probs=160.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCCH-HHHHHHH
Q 012365 112 LMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK-YVFMALI 190 (465)
Q Consensus 112 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ 190 (465)
.|.-..+...+...|...|++++|+.+++...+. +-...+ . ..|.. ...+.+.
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~-----------l~k~~G---~------------~hl~va~~l~~~a 248 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRI-----------LEKTSG---L------------KHLVVASMLNILA 248 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----------HHHccC---c------------cCHHHHHHHHHHH
Confidence 3334556777899999999999999999987653 000111 0 01111 1222466
Q ss_pred HHHHhcCCHHHHHHHHHHh--------cCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHc-----CCC-CCH-HHH
Q 012365 191 NAYTTCGEFEKARQVVLDA--------EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA-----GCN-LEP-RAV 255 (465)
Q Consensus 191 ~~~~~~g~~~~a~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----~~~-p~~-~~~ 255 (465)
..|...+++++|..+|+++ +...+....+++.|..+|.+.|++++|..++++..+- |.. |.. ..+
T Consensus 249 ~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l 328 (508)
T KOG1840|consen 249 LVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQL 328 (508)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 7788889999998888762 2333334446888899999999999998888765432 211 222 235
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHcCC-----C----CCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHH
Q 012365 256 IALIEHLNSEGELNRLIQLLEEVHDP-----D----YWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHF 326 (465)
Q Consensus 256 ~~ll~~~~~~g~~~~a~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 326 (465)
+.+...|+..+++++|..+++...+. + .....+..+...|...|++++|.++|+++...
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~------------ 396 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI------------ 396 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH------------
Confidence 56667778888888888777754321 1 01123445555555666666666666555441
Q ss_pred HHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCC-cHHHHHHHHHHhHhhhhhhHHHHHHHHHHH----cC--CCCChhHH
Q 012365 327 SEIFCQIATTDPPDVQIGLDLLQFIKDELGLPP-SRKCLDFLLGACVNARDLKRAHLIWKEYEN----AG--LPYNVLSY 399 (465)
Q Consensus 327 ~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~----~g--~~p~~~~~ 399 (465)
.++. ..+..+ ....++.+...|.+.+++.+|.++|.+... .| .+....+|
T Consensus 397 ---------------------~~~~--~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~ 453 (508)
T KOG1840|consen 397 ---------------------LREL--LGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTY 453 (508)
T ss_pred ---------------------HHhc--ccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHH
Confidence 0000 012223 245677888889888999989888887653 22 23334589
Q ss_pred HHHHHHHHhcCChhhHHHHHhccC
Q 012365 400 LWMYKAFLASGNRKSASKLLSKMP 423 (465)
Q Consensus 400 ~~l~~~~~~~g~~~~A~~~~~~m~ 423 (465)
..|+..|.+.|++++|.++.+.+.
T Consensus 454 ~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 454 LNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHH
Confidence 999999999999999999998766
No 64
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.22 E-value=1.2e-06 Score=80.59 Aligned_cols=157 Identities=11% Similarity=0.075 Sum_probs=103.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012365 48 TINSILHACEESYEFNLVRRIYPMICHH-NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126 (465)
Q Consensus 48 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 126 (465)
.|-.-+..+..+|++......|+..+.. .+..-..+|...+...-..+-++.+..++++..+. ++..-+--|..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHH
Confidence 4555556667778888888888877653 22233457778888778888888999999888853 444577788888
Q ss_pred HhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHhhCChh------HHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012365 127 FRKKDVQGALMVLKEMEQAN------VKPDSQTFSYLIHNCSNEE------DIIKYYEQLKSAGGQITKYVFMALINAYT 194 (465)
Q Consensus 127 ~~~g~~~~a~~~~~~m~~~~------~~p~~~~~~~ll~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 194 (465)
++.+++++|-+.+....... .+.+...|..+..-.++.. +++.+++.+...-..--...|.+|.+.|.
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 89999999988888875332 2333344444444333322 23344444433222222467888889999
Q ss_pred hcCCHHHHHHHHHH
Q 012365 195 TCGEFEKARQVVLD 208 (465)
Q Consensus 195 ~~g~~~~a~~~~~~ 208 (465)
+.|.+++|.++|++
T Consensus 260 r~g~~ekarDvyee 273 (835)
T KOG2047|consen 260 RSGLFEKARDVYEE 273 (835)
T ss_pred HhhhhHHHHHHHHH
Confidence 99999998888765
No 65
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=2.8e-08 Score=84.43 Aligned_cols=205 Identities=12% Similarity=0.104 Sum_probs=133.2
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----HccCcHHHHHHHHHHHcCCCCC---ccchhhHhh
Q 012365 222 ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL-----NSEGELNRLIQLLEEVHDPDYW---MDGCCRLIL 293 (465)
Q Consensus 222 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~ 293 (465)
.++--|.+.+++.+|..+.+++... .|-......++.+- .......-|.+.|+..-+.+.. +.+...+..
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 4555678889999999887776432 23333333333222 2233456677777777666644 334566777
Q ss_pred HhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHH-HHHHHHhH
Q 012365 294 HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCL-DFLLGACV 372 (465)
Q Consensus 294 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~-~~ll~~~~ 372 (465)
++.-..++++.+..++.+..-...+... +.-+..+... .|++.+|.++|-.+. ...++ |..+| ..|.++|.
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~F-n~N~AQAk~a-----tgny~eaEelf~~is-~~~ik-n~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDF-NLNLAQAKLA-----TGNYVEAEELFIRIS-GPEIK-NKILYKSMLARCYI 439 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchh-hhHHHHHHHH-----hcChHHHHHHHhhhc-Chhhh-hhHHHHHHHHHHHH
Confidence 7777888999999888887743333333 3333333333 399999999999887 33333 45566 45667889
Q ss_pred hhhhhhHHHHHHHHHHHcCCCCChhHHHHHH-HHHHhcCChhhHHHHHhccCCCCCC---hhHHHHHHHhh
Q 012365 373 NARDLKRAHLIWKEYENAGLPYNVLSYLWMY-KAFLASGNRKSASKLLSKMPKDDPH---VRFVIQACKQT 439 (465)
Q Consensus 373 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~l~~~~~~ 439 (465)
+.+.+..|+.+ |.+.+-+.+..+.-.+| +-|.+++.+=-|.+.|+.+...+|+ |..--++|...
T Consensus 440 ~nkkP~lAW~~---~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWeGKRGACaG~ 507 (557)
T KOG3785|consen 440 RNKKPQLAWDM---MLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENWEGKRGACAGL 507 (557)
T ss_pred hcCCchHHHHH---HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccccCCccchHHHH
Confidence 99999988654 55554455555555554 5788899988888888888877774 55566666664
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=2.8e-09 Score=89.41 Aligned_cols=236 Identities=10% Similarity=-0.016 Sum_probs=188.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHH-HHH
Q 012365 181 ITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI-ALI 259 (465)
Q Consensus 181 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~ll 259 (465)
.|..--+.+..+|.+.|-+.+|++.|+.. ....+.+.||-.|-+.|.+..+++.|+.++.+-.+.- |-..||. -+.
T Consensus 221 ~dwwWk~Q~gkCylrLgm~r~Aekqlqss-L~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f--P~~VT~l~g~A 297 (478)
T KOG1129|consen 221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSS-LTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF--PFDVTYLLGQA 297 (478)
T ss_pred HhHHHHHHHHHHHHHhcChhhhHHHHHHH-hhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC--CchhhhhhhhH
Confidence 34455567889999999999999999872 2333334468999999999999999999999988864 6666654 456
Q ss_pred HHHHccCcHHHHHHHHHHHcCC-CCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCC
Q 012365 260 EHLNSEGELNRLIQLLEEVHDP-DYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDP 338 (465)
Q Consensus 260 ~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 338 (465)
..+-..++.++|.++++...+. +..+++...+...|.-.++.+-|+.+++++.+.+..+...+..+-.+.+..
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ya------ 371 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYA------ 371 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhh------
Confidence 7778889999999999998764 466777777777777899999999999999996665555555544443333
Q ss_pred CchhhhHHhHHHHHhhcCCCCcH--HHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHH
Q 012365 339 PDVQIGLDLLQFIKDELGLPPSR--KCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSAS 416 (465)
Q Consensus 339 ~~~~~A~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 416 (465)
++++-++..|++.. ..--.|+. ..|-.+-......||+..|.+.|+-....+ +.+...++.|.-.-.+.|+.++|.
T Consensus 372 qQ~D~~L~sf~RAl-stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Ar 449 (478)
T KOG1129|consen 372 QQIDLVLPSFQRAL-STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGAR 449 (478)
T ss_pred cchhhhHHHHHHHH-hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHH
Confidence 88999999999888 54444543 467778777888999999999999999874 777889999999999999999999
Q ss_pred HHHhccCCCCC
Q 012365 417 KLLSKMPKDDP 427 (465)
Q Consensus 417 ~~~~~m~~~~~ 427 (465)
.+++......|
T Consensus 450 sll~~A~s~~P 460 (478)
T KOG1129|consen 450 SLLNAAKSVMP 460 (478)
T ss_pred HHHHHhhhhCc
Confidence 99998877665
No 67
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.20 E-value=7.8e-07 Score=81.75 Aligned_cols=127 Identities=10% Similarity=0.082 Sum_probs=65.0
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC------CCCCHHHHHH
Q 012365 13 SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHN------LKPNSETFRS 86 (465)
Q Consensus 13 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ 86 (465)
.|...+......|-++-++.+|++-++- ++..-+.-+..++..+++++|.+.+....... .+.+...|..
T Consensus 140 IW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~e 215 (835)
T KOG2047|consen 140 IWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLE 215 (835)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHH
Confidence 3444444444555555666666655542 22234455566666666777666666654311 1333444444
Q ss_pred HHHHHhccCCH---HHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 012365 87 MISLNVKIKDF---DSAYSLLDDLKEMNLMPT--ASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145 (465)
Q Consensus 87 li~~~~~~g~~---~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 145 (465)
+-+..++.-+. -.+..+++.+... -+| ...|+.|.+-|.+.|++++|..+|++..+.
T Consensus 216 lcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 216 LCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred HHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 44444433221 1223333333321 233 234677777777777777777777765543
No 68
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=1.4e-07 Score=83.72 Aligned_cols=338 Identities=12% Similarity=0.017 Sum_probs=204.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 012365 51 SILHACEESYEFNLVRRIYPMICHHNLKPN-SETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPT-ASMYNAIMAGYFR 128 (465)
Q Consensus 51 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~ 128 (465)
...+-|.+.|++++|++.|.+.+.. .|+ +..|...-.+|...|+|+++.+--.+..+. .|+ +-.+.--.+++-.
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQ 195 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHh
Confidence 3445577889999999999998887 477 888999999999999999988877666654 354 2334444455666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhH---HH---------HHHHHHHHcC--CCCCHHHHHHHHHHHH
Q 012365 129 KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED---II---------KYYEQLKSAG--GQITKYVFMALINAYT 194 (465)
Q Consensus 129 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---~~---------~~~~~~~~~~--~~~~~~~~~~l~~~~~ 194 (465)
.|++++|+.= .|..+++..+.+... ++ +.-+.+.+.+ +-|+.....+....+.
T Consensus 196 lg~~~eal~D-------------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~ 262 (606)
T KOG0547|consen 196 LGKFDEALFD-------------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFH 262 (606)
T ss_pred hccHHHHHHh-------------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcc
Confidence 6777666432 233333333322111 11 1222232222 2344443333332221
Q ss_pred hcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHH----c-CCChhHHHHHHHHHHHc-CCCCCHH-----HHHHHHHH--
Q 012365 195 TCGEFEKARQVVLDAEIPVKSRSEVKSALVSALA----S-HGRTSDAIIVYEEIKEA-GCNLEPR-----AVIALIEH-- 261 (465)
Q Consensus 195 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~----~-~g~~~~a~~~~~~m~~~-~~~p~~~-----~~~~ll~~-- 261 (465)
..- . ..+. ...+.. ...+..++. . ...+..|...+.+-... ...++.. . ..+..+
T Consensus 263 ~~~--~---~~~~--~~~~ks----Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~l-e~~A~al~ 330 (606)
T KOG0547|consen 263 ADP--K---PLFD--NKSDKS----DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAEL-EYMAEALL 330 (606)
T ss_pred ccc--c---cccc--CCCccc----hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhH-HHHHHHHH
Confidence 100 0 0000 000001 111111111 1 11344444444332211 0111111 1 111222
Q ss_pred -----HHccCcHHHHHHHHHHHcCCCCCccc-hhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhc
Q 012365 262 -----LNSEGELNRLIQLLEEVHDPDYWMDG-CCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIAT 335 (465)
Q Consensus 262 -----~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 335 (465)
+.-.|+.-.+..-|+..+.....+.. |-.+...|....+.++....|+...+-.+.+..+|+.--.-.|-.
T Consensus 331 ~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL--- 407 (606)
T KOG0547|consen 331 LRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLL--- 407 (606)
T ss_pred HhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHH---
Confidence 23457778888888888877665544 777777888899999999999998885555544444322222332
Q ss_pred CCCCchhhhHHhHHHHHhhcCCCC-cHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhh
Q 012365 336 TDPPDVQIGLDLLQFIKDELGLPP-SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKS 414 (465)
Q Consensus 336 ~~~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 414 (465)
+++++|..=|++.. .+.| +...|-.+-.+..+.+++++++..|++..++ +|.-+..|+.....+...++++.
T Consensus 408 ---~q~e~A~aDF~Kai---~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~ 480 (606)
T KOG0547|consen 408 ---QQYEEAIADFQKAI---SLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDK 480 (606)
T ss_pred ---HHHHHHHHHHHHHh---hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHH
Confidence 78899999999888 6677 4456677777777889999999999999987 78888899999999999999999
Q ss_pred HHHHHhccCCCCC
Q 012365 415 ASKLLSKMPKDDP 427 (465)
Q Consensus 415 A~~~~~~m~~~~~ 427 (465)
|.+.|+...+..+
T Consensus 481 A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 481 AVKQYDKAIELEP 493 (606)
T ss_pred HHHHHHHHHhhcc
Confidence 9999998876444
No 69
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.4e-07 Score=85.28 Aligned_cols=429 Identities=11% Similarity=0.016 Sum_probs=278.6
Q ss_pred CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 012365 10 SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89 (465)
Q Consensus 10 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 89 (465)
+..-|..+++-+....++..|+-+-++....+. |+...--+.+++.-.|.+.+|..+...-.-. ..|..+......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~--dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTN--DPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccC--ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 345566667766777788888888888776554 4444445778888888888888777654332 357788888888
Q ss_pred HHhccCCHHHHHHHHHH----HHHc---------CCCCCHHH----HHHHH-------HHHHhcCCHHHHHHHHHHHHHC
Q 012365 90 LNVKIKDFDSAYSLLDD----LKEM---------NLMPTASM----YNAIM-------AGYFRKKDVQGALMVLKEMEQA 145 (465)
Q Consensus 90 ~~~~~g~~~~a~~~~~~----m~~~---------~~~~~~~~----~~~li-------~~~~~~g~~~~a~~~~~~m~~~ 145 (465)
++.+..+++.|..++.. +... -+.+|..- -+.-. ..|....+.++|...|.+...
T Consensus 91 ~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~- 169 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL- 169 (611)
T ss_pred HHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh-
Confidence 88999999999988872 2100 01111111 11111 223444556666666666443
Q ss_pred CCCCCHHHHHHHHH---hh-------------------CC--hhHHHHHHHHHHH----------------cCCCCCHHH
Q 012365 146 NVKPDSQTFSYLIH---NC-------------------SN--EEDIIKYYEQLKS----------------AGGQITKYV 185 (465)
Q Consensus 146 ~~~p~~~~~~~ll~---~~-------------------~~--~~~~~~~~~~~~~----------------~~~~~~~~~ 185 (465)
.|...|..+.. +. .+ ....+.+++.... .+..-+...
T Consensus 170 ---~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dl 246 (611)
T KOG1173|consen 170 ---ADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDL 246 (611)
T ss_pred ---cchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHH
Confidence 23322222211 10 00 0111112221100 122334455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 012365 186 FMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264 (465)
Q Consensus 186 ~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 264 (465)
.....+-+...+++.+..++++.. ...+.... .+..-|.++...|+..+-..+-.+|.+.- +-.+.+|-++.--|..
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~-~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKDPFHLP-CLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcc-hHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHH
Confidence 556667778889999999999873 33333332 36666778889999988888888888875 2346788888888888
Q ss_pred cCcHHHHHHHHHHHcCCCCC-ccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhh
Q 012365 265 EGELNRLIQLLEEVHDPDYW-MDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQI 343 (465)
Q Consensus 265 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 343 (465)
.|+.++|.+.|.+....+.. -.+|......|.-.+..+.|+..+....+-.+....++-.+-..+ ...++.+.
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey------~~t~n~kL 398 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEY------MRTNNLKL 398 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHH------HHhccHHH
Confidence 89999999999988765544 235666777788899999999999887774333333332222222 22489999
Q ss_pred hHHhHHHHHhhcCCCC-cHHHHHHHHHHhHhhhhhhHHHHHHHHHHHc--CC----CCChhHHHHHHHHHHhcCChhhHH
Q 012365 344 GLDLLQFIKDELGLPP-SRKCLDFLLGACVNARDLKRAHLIWKEYENA--GL----PYNVLSYLWMYKAFLASGNRKSAS 416 (465)
Q Consensus 344 A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--g~----~p~~~~~~~l~~~~~~~g~~~~A~ 416 (465)
|.+.|.+.. ++.| |+...+-+.-.....+.+.+|..+|+..... .+ +.-..+++.|..+|.+.+++++|+
T Consensus 399 Ae~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 399 AEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 999999988 7877 5666777776677889999999999988732 01 113347899999999999999999
Q ss_pred HHHhccCCCCCChhHHHHHHHhhccccchh--------hhcCCCCCcch
Q 012365 417 KLLSKMPKDDPHVRFVIQACKQTYTIPSLQ--------KERGFEKDRDT 457 (465)
Q Consensus 417 ~~~~~m~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~~~pd~~t 457 (465)
..+++.+...+...+...+.+..|...+.. +..++.||..+
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 999999987776555555555544433222 34677777644
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.18 E-value=2.3e-08 Score=92.50 Aligned_cols=247 Identities=13% Similarity=0.043 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHc-----C-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 012365 81 SETFRSMISLNVKIKDFDSAYSLLDDLKEM-----N-LMPTASM-YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQT 153 (465)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 153 (465)
..+...+...|...|+++.|+.+++..... | ..|...+ .+.+...|...+++++|..+|+++..-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i-------- 270 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI-------- 270 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------
Confidence 457777999999999999999999887654 1 1233333 334667888899999999999987631
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-h-------cCCCCChHHHHHHHHH
Q 012365 154 FSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-A-------EIPVKSRSEVKSALVS 225 (465)
Q Consensus 154 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~-------~~~~~~~~~~~~~l~~ 225 (465)
....++.. .+--..+++.|...|.+.|++++|...+++ + ....+.....++.+..
T Consensus 271 ---~e~~~G~~--------------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~ 333 (508)
T KOG1840|consen 271 ---REEVFGED--------------HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAA 333 (508)
T ss_pred ---HHHhcCCC--------------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence 11111111 111235666777789999999988888765 1 1222222223778888
Q ss_pred HHHcCCChhHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHccCcHHHHHHHHHHHcCCC----CC-----ccchh
Q 012365 226 ALASHGRTSDAIIVYEEIKEA---GCNLE----PRAVIALIEHLNSEGELNRLIQLLEEVHDPD----YW-----MDGCC 289 (465)
Q Consensus 226 ~~~~~g~~~~a~~~~~~m~~~---~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~-----~~~~~ 289 (465)
.++..+++++|..++....+. -+.++ ..+++.|-..|.+.|++++|.++++.+.... .. -..++
T Consensus 334 ~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~ 413 (508)
T KOG1840|consen 334 ILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLN 413 (508)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHH
Confidence 999999999999998865432 12223 4578899999999999999999999875421 11 11345
Q ss_pred hHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCc-HHHHHHHH
Q 012365 290 RLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS-RKCLDFLL 368 (465)
Q Consensus 290 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll 368 (465)
.+...|.+.+.+.+|..+|.+... +. .. ...-.|+ ..+|..|.
T Consensus 414 ~la~~~~~~k~~~~a~~l~~~~~~---------------------------------i~-~~--~g~~~~~~~~~~~nL~ 457 (508)
T KOG1840|consen 414 QLAEAYEELKKYEEAEQLFEEAKD---------------------------------IM-KL--CGPDHPDVTYTYLNLA 457 (508)
T ss_pred HHHHHHHHhcccchHHHHHHHHHH---------------------------------HH-HH--hCCCCCchHHHHHHHH
Confidence 677778888888888888877655 11 00 0122343 46888999
Q ss_pred HHhHhhhhhhHHHHHHHHHH
Q 012365 369 GACVNARDLKRAHLIWKEYE 388 (465)
Q Consensus 369 ~~~~~~g~~~~A~~~~~~m~ 388 (465)
..|...|+++.|.++.+.+.
T Consensus 458 ~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 458 ALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHcccHHHHHHHHHHHH
Confidence 99999999999999988886
No 71
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.17 E-value=1e-06 Score=81.14 Aligned_cols=409 Identities=13% Similarity=0.116 Sum_probs=248.2
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 012365 12 ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLN 91 (465)
Q Consensus 12 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 91 (465)
..|..++..| ..+++...+++.+.+.+. .+-...|.....-.+...|+.++|........+.. .-+.+.|..+.-.+
T Consensus 9 ~lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 9 ALFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHH
Confidence 3455555555 467888888888888773 33355566555555677899999998888777654 45778888888888
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHh---hCChhHH
Q 012365 92 VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS-QTFSYLIHN---CSNEEDI 167 (465)
Q Consensus 92 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~---~~~~~~~ 167 (465)
-...++++|.+.|......+ +-|...|.-+.-.-++.|+++.....-.++.+. .|.. ..|..+..+ .+....+
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999887765 556777887777778888888888888877764 3333 333333333 2334445
Q ss_pred HHHHHHHHHcC-CCCCHHHHHHH------HHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHH
Q 012365 168 IKYYEQLKSAG-GQITKYVFMAL------INAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY 240 (465)
Q Consensus 168 ~~~~~~~~~~~-~~~~~~~~~~l------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 240 (465)
..+.+...+.. -.|+...+.-. .......|..++|.+.+...+...-+....-..-...+.+.+++++|..++
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 55666555543 24555444322 234567788899988887533333333222344566778889999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHH-cc-CcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHH-HHHHHHHHcccc
Q 012365 241 EEIKEAGCNLEPRAVIALIEHLN-SE-GELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSAT-DLLKQLKDKFKD 317 (465)
Q Consensus 241 ~~m~~~~~~p~~~~~~~ll~~~~-~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~~~~ 317 (465)
..+..++ ||..-|...+..+. +- +..+....++....+.-........+-........+.... .++..+.+++.|
T Consensus 243 ~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 243 RRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred HHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 9999988 88887766655444 33 3333333666666554322221112222222223333332 233444444444
Q ss_pred hhHHHHHHHHHHHHhhhcCCCCchh----hhHHhHHHHHh---------hcCCCCcHHHHH--HHHHHhHhhhhhhHHHH
Q 012365 318 DEMAMEYHFSEIFCQIATTDPPDVQ----IGLDLLQFIKD---------ELGLPPSRKCLD--FLLGACVNARDLKRAHL 382 (465)
Q Consensus 318 ~~~~~~~~l~~~~~~~~~~~~~~~~----~A~~~~~~m~~---------~~~~~p~~~~~~--~ll~~~~~~g~~~~A~~ 382 (465)
....--..+. .. +...+ .+..+...+.. ...-.|+...|. .+...+-..|+++.|..
T Consensus 321 ~vf~dl~SLy---k~-----p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~ 392 (700)
T KOG1156|consen 321 SVFKDLRSLY---KD-----PEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALE 392 (700)
T ss_pred chhhhhHHHH---hc-----hhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHH
Confidence 3333211111 00 00000 01111111110 011256665554 46777888999999999
Q ss_pred HHHHHHHcCCCCChh-HHHHHHHHHHhcCChhhHHHHHhccCCCCCChhHHHHHHHh
Q 012365 383 IWKEYENAGLPYNVL-SYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQACKQ 438 (465)
Q Consensus 383 ~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l~~~~~ 438 (465)
+++....+ .|+.. .|..-.+.+...|++++|..++++..+.|.....+-+-|+.
T Consensus 393 yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAK 447 (700)
T KOG1156|consen 393 YIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAK 447 (700)
T ss_pred HHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 99998876 45543 56566678888999999999999988877644444434544
No 72
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.15 E-value=3.9e-07 Score=85.47 Aligned_cols=251 Identities=14% Similarity=0.106 Sum_probs=172.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhc--
Q 012365 53 LHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMY-NAIMAGYFRK-- 129 (465)
Q Consensus 53 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~-- 129 (465)
...+...|++++|++.++.-.+. +.............+.+.|+.++|..+|..+.+.+ |+...| ..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 34567889999999999875443 33345667778899999999999999999999987 555554 4555554222
Q ss_pred ---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 012365 130 ---KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED----IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202 (465)
Q Consensus 130 ---g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 202 (465)
.+.+...++|+++...- |.......+.-.+...++ +..++..+...|++ .+++.+-..|....+.+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 35777888999887642 544444433333333333 34456666677754 4566666666655555555
Q ss_pred HHHHHHh----cC-----------CCCChHH--HHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHc
Q 012365 203 RQVVLDA----EI-----------PVKSRSE--VKSALVSALASHGRTSDAIIVYEEIKEAGCNLE-PRAVIALIEHLNS 264 (465)
Q Consensus 203 ~~~~~~~----~~-----------~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~ 264 (465)
.+++... .. ...|... ++..+...|...|++++|++++++.++.. |+ +..|..-...+-+
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh 240 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHH
Confidence 5555441 10 1122221 34666788889999999999999998875 65 6677788888999
Q ss_pred cCcHHHHHHHHHHHcCCCCCccch-hhHhhHhhhcCChhHHHHHHHHHHH
Q 012365 265 EGELNRLIQLLEEVHDPDYWMDGC-CRLILHCVRFKQLSSATDLLKQLKD 313 (465)
Q Consensus 265 ~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~ 313 (465)
.|++.+|.+.++..+..+..-.-. +..+.++.+.|++++|.+++....+
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr 290 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTR 290 (517)
T ss_pred CCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcC
Confidence 999999999999988766443322 4566677788999999888887766
No 73
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=6.2e-07 Score=76.49 Aligned_cols=381 Identities=12% Similarity=0.107 Sum_probs=180.0
Q ss_pred HHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCC
Q 012365 18 ITYSCDLLKVHVALDVVEQMVQGELVPSTETINS-ILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKD 96 (465)
Q Consensus 18 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 96 (465)
+.-+....|+..|+.+++.-...+-. ....... +..++.+.|++++|...|..+.... .++...+-.|.-++.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~E-EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 44455677778888877766543322 1222333 3345566788888888888776644 5566666666555556677
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHH
Q 012365 97 FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKS 176 (465)
Q Consensus 97 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~ 176 (465)
+.+|..+-.... .++..-..|.....+.++-++-..+-+.+.+. .-|..+...+=-.-....++.+++..+..
T Consensus 107 Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~--~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 107 YIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT--LEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh--HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777776644322 23333334444445556655555544444321 11111111111111233455555555554
Q ss_pred cCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHH
Q 012365 177 AGGQITKYVFMALI-NAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRA 254 (465)
Q Consensus 177 ~~~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 254 (465)
.. |+-...|..+ -+|.+..-++-+.++++- +..-+..+. ..|.......+.=.-..|.+-..++.+.+-. ...
T Consensus 180 dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSti-A~NLkacn~fRl~ngr~ae~E~k~ladN~~~--~~~ 254 (557)
T KOG3785|consen 180 DN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTI-AKNLKACNLFRLINGRTAEDEKKELADNIDQ--EYP 254 (557)
T ss_pred cC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHH-HHHHHHHHHhhhhccchhHHHHHHHHhcccc--cch
Confidence 32 2333333332 344555556666666554 222222222 2343333333322222233333333333211 111
Q ss_pred HHHHHHHHHcc-----CcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHH
Q 012365 255 VIALIEHLNSE-----GELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEI 329 (465)
Q Consensus 255 ~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 329 (465)
.+.-+++. .+-+.|++++-.+.+ ..|++...++.+|.+.+++.+|..+.+.+. |..++..++.++
T Consensus 255 ---f~~~l~rHNLVvFrngEgALqVLP~L~~--~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~-----PttP~EyilKgv 324 (557)
T KOG3785|consen 255 ---FIEYLCRHNLVVFRNGEGALQVLPSLMK--HIPEARLNLIIYYLNQNDVQEAISLCKDLD-----PTTPYEYILKGV 324 (557)
T ss_pred ---hHHHHHHcCeEEEeCCccHHHhchHHHh--hChHhhhhheeeecccccHHHHHHHHhhcC-----CCChHHHHHHHH
Confidence 11111121 222444444443332 335555666677777777777777766552 222222222221
Q ss_pred HH-hhhc--CCCCchhhhHHhHHHHHhhcCCC------------------------------------CcHHHHHHHHHH
Q 012365 330 FC-QIAT--TDPPDVQIGLDLLQFIKDELGLP------------------------------------PSRKCLDFLLGA 370 (465)
Q Consensus 330 ~~-~~~~--~~~~~~~~A~~~~~~m~~~~~~~------------------------------------p~~~~~~~ll~~ 370 (465)
.. +.++ .+...+.-|.+.|+-.- .++.. .|...| .+..+
T Consensus 325 v~aalGQe~gSreHlKiAqqffqlVG-~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQA 402 (557)
T KOG3785|consen 325 VFAALGQETGSREHLKIAQQFFQLVG-ESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQA 402 (557)
T ss_pred HHHHhhhhcCcHHHHHHHHHHHHHhc-ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHH
Confidence 11 1111 11123333444444333 22221 111111 24556
Q ss_pred hHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCC
Q 012365 371 CVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424 (465)
Q Consensus 371 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 424 (465)
.+..|++.+|+++|-.+....++.+..-...|.++|.+.|+++.|+.++-++--
T Consensus 403 k~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t 456 (557)
T KOG3785|consen 403 KLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT 456 (557)
T ss_pred HHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC
Confidence 666777777777776666544444444444555677777777777776655543
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=7.2e-08 Score=81.14 Aligned_cols=227 Identities=11% Similarity=0.040 Sum_probs=137.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 012365 50 NSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129 (465)
Q Consensus 50 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 129 (465)
+.+.++|.+.|-+.+|++-++.-.+. .|-+.||-.|-.+|.+..++..|+.+|.+-.+. +|-|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 44556666666666666666665554 345556666666666666666666666665543 122333333344555556
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHh--hC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012365 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHN--CS-NEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206 (465)
Q Consensus 130 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 206 (465)
++.++|.++|+...+.. +.+.....++-.. |. +.+-+..+++.+.+.|+. ++..|+.+.-+|...+++|-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 66666666666655431 1111111111111 22 334455566666666644 6677777777788888888888888
Q ss_pred HHhcC---CCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCC
Q 012365 207 LDAEI---PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPD 282 (465)
Q Consensus 207 ~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 282 (465)
++... .+.....+|..+-...+..|++..|.+.|+-....+. -....++.|.-.-.+.|+++.|..++.......
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 76211 1222222466677777888888888888888777652 245677777777788888888888888776544
No 75
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.00 E-value=1e-05 Score=76.21 Aligned_cols=127 Identities=9% Similarity=-0.001 Sum_probs=90.9
Q ss_pred hHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCc-HHHHHHHH
Q 012365 290 RLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS-RKCLDFLL 368 (465)
Q Consensus 290 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll 368 (465)
.....+.+.++.++|...+.+.....+-....++..-..+.. .|..++|.+.|.... -+.|+ +.+..++.
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~------~~~~~EA~~af~~Al---~ldP~hv~s~~Ala 725 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEV------KGQLEEAKEAFLVAL---ALDPDHVPSMTALA 725 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHH------HHhhHHHHHHHHHHH---hcCCCCcHHHHHHH
Confidence 445566778888888877777666322222222221111122 388899998888877 66775 45667888
Q ss_pred HHhHhhhhhhHHHH--HHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCC
Q 012365 369 GACVNARDLKRAHL--IWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDD 426 (465)
Q Consensus 369 ~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 426 (465)
.++.+.|+..-|.. ++.++.+.+ |.+...|..+...+-+.|+.+.|...|+-..+..
T Consensus 726 ~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 726 ELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 88888898877777 899999885 7888899999999999999999999998766543
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.00 E-value=8.1e-07 Score=78.68 Aligned_cols=229 Identities=12% Similarity=0.044 Sum_probs=155.0
Q ss_pred HHhcccCHHHHHHHHHHHHhCCC-CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCC
Q 012365 20 YSCDLLKVHVALDVVEQMVQGEL-VPS--TETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKD 96 (465)
Q Consensus 20 ~~~~~g~~~~A~~~~~~m~~~~~-~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 96 (465)
.....+..+.++.-+.++..... .|+ ...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|+
T Consensus 35 ~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 35 PLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGN 113 (296)
T ss_pred ccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCC
Confidence 34445678889999988886432 222 3457777778889999999999999998876 5578899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHhhCChhHHHHHHHH
Q 012365 97 FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ---TFSYLIHNCSNEEDIIKYYEQ 173 (465)
Q Consensus 97 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~~~~~ 173 (465)
+++|...|++..+.. +-+..+|..+...+...|++++|.+.|+...+. .|+.. .+..+.....+.+++...++.
T Consensus 114 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 114 FDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 999999999998764 445778888888999999999999999998864 34432 222233334455666666654
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHH--HHHHHH-hcCCC---CChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcC
Q 012365 174 LKSAGGQITKYVFMALINAYTTCGEFEKA--RQVVLD-AEIPV---KSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247 (465)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a--~~~~~~-~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 247 (465)
..... .++...+ .+. ....|+...+ .+.+.. ..... ......|..+...+...|++++|...|++..+.+
T Consensus 191 ~~~~~-~~~~~~~-~~~--~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 191 RYEKL-DKEQWGW-NIV--EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHhhC-CccccHH-HHH--HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 43322 2222222 222 2334554333 322221 11111 1122358889999999999999999999999876
Q ss_pred CCCCHHHHHH
Q 012365 248 CNLEPRAVIA 257 (465)
Q Consensus 248 ~~p~~~~~~~ 257 (465)
+ ||..-+..
T Consensus 267 ~-~~~~e~~~ 275 (296)
T PRK11189 267 V-YNFVEHRY 275 (296)
T ss_pred C-chHHHHHH
Confidence 3 35444433
No 77
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=1.4e-06 Score=72.59 Aligned_cols=298 Identities=10% Similarity=0.076 Sum_probs=155.2
Q ss_pred CCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 012365 6 EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85 (465)
Q Consensus 6 ~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 85 (465)
|+.--..-+++.+..+.+..+++.|++++..-.++..+ +......|..+|-...++..|-..|+++-.. .|...-|.
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYr 81 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYR 81 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHH
Confidence 33334445778888888999999999999988877543 7777888888888889999999999998765 35554444
Q ss_pred HH-HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhC
Q 012365 86 SM-ISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY--FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS 162 (465)
Q Consensus 86 ~l-i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 162 (465)
.. ...+.+.+.+..|.++...|.+. |+...-..-+.+. -..+++..+..++++....|-......-.+++---+
T Consensus 82 lY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 82 LYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEG 158 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccc
Confidence 32 33455667777787777766642 2222111112211 123444445444444332110000000000110111
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh-----c----------CCC-------CCh----
Q 012365 163 NEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA-----E----------IPV-------KSR---- 216 (465)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-----~----------~~~-------~~~---- 216 (465)
+.+.+.+-|+...+.+--.....|+..+ +..+.|+.+.|++...++ . ... .+.
T Consensus 159 qyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~ 237 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQ 237 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHH
Confidence 1222222222222222111233333322 233445555555444321 0 000 000
Q ss_pred ---HHHHHHHHHHHHcCCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHc-CCCCCccchhhH
Q 012365 217 ---SEVKSALVSALASHGRTSDAIIVYEEIKEA-GCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH-DPDYWMDGCCRL 291 (465)
Q Consensus 217 ---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~ 291 (465)
...+|.-...+.+.|+++.|.+-+..|..+ .-..|+.|...+.-.=... ++-...+-+.-+. ..+.+++++..+
T Consensus 238 Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~-~p~~g~~KLqFLL~~nPfP~ETFANl 316 (459)
T KOG4340|consen 238 SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDA-RPTEGFEKLQFLLQQNPFPPETFANL 316 (459)
T ss_pred HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccC-CccccHHHHHHHHhcCCCChHHHHHH
Confidence 001233333455678888888888777654 2445677765543322222 2222222222222 234667788888
Q ss_pred hhHhhhcCChhHHHHHHHHH
Q 012365 292 ILHCVRFKQLSSATDLLKQL 311 (465)
Q Consensus 292 ~~~~~~~~~~~~a~~~~~~~ 311 (465)
+..||++.-++.|-+++.+-
T Consensus 317 LllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhC
Confidence 88888888888888887654
No 78
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.99 E-value=5.9e-06 Score=75.94 Aligned_cols=201 Identities=9% Similarity=-0.055 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCC-CCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH--
Q 012365 11 SASYKKLITYSCDLLKVHVALDVVEQMVQGEL-VPSTETI-NSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS-- 86 (465)
Q Consensus 11 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 86 (465)
...|..+...+...|+.+.+.+.+....+... .++.... ......+...|++++|.+++++..+.. +.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 45566666666677888887777777654322 2232222 122233566789999999998887764 444444442
Q ss_pred -HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChh
Q 012365 87 -MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE 165 (465)
Q Consensus 87 -li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 165 (465)
........+..+.+.+.++... ...+.+......+...+...|++++|...+++..+.. |+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~--------------- 146 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PD--------------- 146 (355)
T ss_pred HHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC---------------
Confidence 2222223455555555555411 1112223444556667888899999999988887642 32
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh-cCCCC-Ch--HHHHHHHHHHHHcCCChhHHHHHHH
Q 012365 166 DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVK-SR--SEVKSALVSALASHGRTSDAIIVYE 241 (465)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~-~~--~~~~~~l~~~~~~~g~~~~a~~~~~ 241 (465)
+...+..+...+...|++++|...+++. ...+. +. ...|..+...+...|++++|..+++
T Consensus 147 ----------------~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~ 210 (355)
T cd05804 147 ----------------DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYD 210 (355)
T ss_pred ----------------CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3445566677788888888888888762 22221 11 1124567777888888888888888
Q ss_pred HHHHc
Q 012365 242 EIKEA 246 (465)
Q Consensus 242 ~m~~~ 246 (465)
+....
T Consensus 211 ~~~~~ 215 (355)
T cd05804 211 THIAP 215 (355)
T ss_pred HHhcc
Confidence 87543
No 79
>PF12854 PPR_1: PPR repeat
Probab=98.98 E-value=5.9e-10 Score=61.83 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=29.9
Q ss_pred cCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHH
Q 012365 5 LEITPSSASYKKLITYSCDLLKVHVALDVVEQMV 38 (465)
Q Consensus 5 ~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~ 38 (465)
.|++||..|||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3788999999999999999999999999998873
No 80
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.2e-05 Score=70.30 Aligned_cols=313 Identities=12% Similarity=0.076 Sum_probs=174.4
Q ss_pred CCCHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---
Q 012365 78 KPNSETFRSMISLNVKI--KDFDSAYSLLDDLKEM-NLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS--- 151 (465)
Q Consensus 78 ~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--- 151 (465)
+|...+....+.+++.. ++...|...+-.+... -++-|+.....+.+.+...|+..+|...|++.+-. .|+.
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~ 268 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEA 268 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhhhh
Confidence 33334444445554443 3334444443333222 24556777777888888888888888888876542 2332
Q ss_pred -HHHHHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHc
Q 012365 152 -QTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALAS 229 (465)
Q Consensus 152 -~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~ 229 (465)
..|..++..-+...+...+...+.... +-+...|-.-........++..|+.+-++ +...++... .+-.-...+..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~-alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHE-ALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccch-HHHhccHHHHh
Confidence 235555554444444444443333221 11223333333344455556666655554 233333322 13333344555
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHH
Q 012365 230 HGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLK 309 (465)
Q Consensus 230 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 309 (465)
.|++++|.-.|+..+.-. +-+..+|..|+++|...|++.+|.-.-....+ ..++-..++.+|.
T Consensus 347 ~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~----------------~~~~sA~~LtL~g 409 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIR----------------LFQNSARSLTLFG 409 (564)
T ss_pred ccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH----------------Hhhcchhhhhhhc
Confidence 666666666666655432 12355666666666666666655544332211 1111111122211
Q ss_pred HHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHH-HHHHHHHHhHhhhhhhHHHHHHHHHH
Q 012365 310 QLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRK-CLDFLLGACVNARDLKRAHLIWKEYE 388 (465)
Q Consensus 310 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~ 388 (465)
...+ ..++..-++|..++++.. .+.|+-. ..+.+...|...|..+.+..+++...
T Consensus 410 ------------------~~V~---~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L 465 (564)
T KOG1174|consen 410 ------------------TLVL---FPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL 465 (564)
T ss_pred ------------------ceee---ccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 0000 111234566777777766 5667643 44556667888889999999988888
Q ss_pred HcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCChhHHHHHHH
Q 012365 389 NAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQACK 437 (465)
Q Consensus 389 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l~~~~ 437 (465)
. ..||....+.|.+.+...+.+.+|...|...+..+|.....+....
T Consensus 466 ~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 466 I--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLR 512 (564)
T ss_pred h--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 7 3788888899999998999999999999999988887766665443
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.96 E-value=2.7e-06 Score=75.41 Aligned_cols=214 Identities=9% Similarity=-0.031 Sum_probs=132.3
Q ss_pred CCHHHHHHHHHHHhhCC-CCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 012365 60 YEFNLVRRIYPMICHHN-LKPN--SETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGAL 136 (465)
Q Consensus 60 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 136 (465)
+..+.+..-+.++.... ..|+ ...|..+...|.+.|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566666666666532 1222 3557777778888899999999998888765 556788899999999999999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHhh---CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCC
Q 012365 137 MVLKEMEQANVKPD-SQTFSYLIHNC---SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIP 212 (465)
Q Consensus 137 ~~~~~m~~~~~~p~-~~~~~~ll~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 212 (465)
+.|++..+. .|+ ...+..+-..+ ++..++.+.++...+.. |+..........+...++.++|...|.+....
T Consensus 119 ~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 119 EAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 999988864 344 33443333333 45555666666666543 33222222223344567889999888652222
Q ss_pred CCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHc---CC--CC-CHHHHHHHHHHHHccCcHHHHHHHHHHHcCCC
Q 012365 213 VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA---GC--NL-EPRAVIALIEHLNSEGELNRLIQLLEEVHDPD 282 (465)
Q Consensus 213 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~~--~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 282 (465)
..+.. |.. .......|+...+ ..+..+.+. .+ .| ....|..+...+.+.|++++|...|+.....+
T Consensus 195 ~~~~~--~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQ--WGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccc--cHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 11111 221 2222334555444 344444421 11 11 23568888888899999999999999887655
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.94 E-value=1.4e-06 Score=70.11 Aligned_cols=197 Identities=14% Similarity=0.003 Sum_probs=142.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 012365 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264 (465)
Q Consensus 185 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 264 (465)
+...|.-.|...|+...|.+-+++.-...+....+|..+...|-+.|..+.|.+-|+....... -+....|..-.-+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHHh
Confidence 4445667889999999999999884444444444688899999999999999999998887652 145566777777888
Q ss_pred cCcHHHHHHHHHHHcCCC---CCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCch
Q 012365 265 EGELNRLIQLLEEVHDPD---YWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDV 341 (465)
Q Consensus 265 ~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 341 (465)
.|++++|...|+.....+ ...+++..+..+..+.|+.+.|.+.|++..+..+....+.-.+....+.. |++
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~------~~y 189 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKA------GDY 189 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhc------ccc
Confidence 999999999999887654 34556777777778899999999999888875444444444444433333 777
Q ss_pred hhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHc
Q 012365 342 QIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENA 390 (465)
Q Consensus 342 ~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 390 (465)
-.|...++... ..+. ++..+.-..|+.-...|+.+.+-++=.++.+.
T Consensus 190 ~~Ar~~~~~~~-~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 190 APARLYLERYQ-QRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred hHHHHHHHHHH-hccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 78887777776 3333 77777777777777778877777766666654
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.93 E-value=1.3e-06 Score=70.21 Aligned_cols=198 Identities=10% Similarity=0.028 Sum_probs=142.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012365 48 TINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127 (465)
Q Consensus 48 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 127 (465)
+...|.-.|...|+...|..-+++.++.. +.+..+|..+...|-+.|+.+.|.+-|++..+.. +.+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 34445566778888888888888888775 4556778888888888888888888888877664 456677788888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012365 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVL 207 (465)
Q Consensus 128 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 207 (465)
..|++++|...|++......-| --..+|..+.-+..+.|+.+.|.+.|+
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~-------------------------------~~s~t~eN~G~Cal~~gq~~~A~~~l~ 163 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYG-------------------------------EPSDTLENLGLCALKAGQFDQAEEYLK 163 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCC-------------------------------CcchhhhhhHHHHhhcCCchhHHHHHH
Confidence 8888888888888877542111 123455556666778888888888888
Q ss_pred H-hcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcC
Q 012365 208 D-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280 (465)
Q Consensus 208 ~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 280 (465)
+ +...+..+. +.-.+.......|++-.|..+++.....+. ++..+....|+.--..|+.+.+.+.=.++.+
T Consensus 164 raL~~dp~~~~-~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 164 RALELDPQFPP-ALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHhCcCCCh-HHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 7 333333332 366777788888888888888888887765 7777777777777777877777766555544
No 84
>PF12854 PPR_1: PPR repeat
Probab=98.91 E-value=2e-09 Score=59.73 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=23.7
Q ss_pred CCCCChhHHHHHHHHHHhcCChhhHHHHHhccC
Q 012365 391 GLPYNVLSYLWMYKAFLASGNRKSASKLLSKMP 423 (465)
Q Consensus 391 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 423 (465)
|++||..||+.||++|++.|+.++|.++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567777777777777777777777777777763
No 85
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=2.3e-06 Score=71.42 Aligned_cols=316 Identities=14% Similarity=0.088 Sum_probs=181.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 012365 41 ELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120 (465)
Q Consensus 41 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 120 (465)
|+.....-+.+++..+.+..++..|.+++..-.++. +.+....+.|..+|....++..|-..++++... .|...-|.
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYr 81 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYR 81 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHH
Confidence 333334456777888888899999999998877775 447888899999999999999999999999875 46666554
Q ss_pred H-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhC--ChhH---HHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012365 121 A-IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS--NEED---IIKYYEQLKSAGGQITKYVFMALINAYT 194 (465)
Q Consensus 121 ~-li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 194 (465)
. -...+-+.+.+..|+.+...|.+. |+...-..-+.+.. ..++ ...+.+..-. .-+..+.+...-...
T Consensus 82 lY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---en~Ad~~in~gClly 155 (459)
T KOG4340|consen 82 LYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---ENEADGQINLGCLLY 155 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC---CCccchhccchheee
Confidence 3 345677889999999999988753 33222222222211 1122 2223333221 123333333334456
Q ss_pred hcCCHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHH-H---HHHHHHHccCcH-
Q 012365 195 TCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV-I---ALIEHLNSEGEL- 268 (465)
Q Consensus 195 ~~g~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~---~ll~~~~~~g~~- 268 (465)
+.|+++.|.+-|+. .+.++-.+...||.-+..| +.|+++.|++...++.++|++-.+..= . -.+.+ ..-|+.
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt~ 233 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNTL 233 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccchH
Confidence 78899999888886 4555544444577655544 568889999999888888764222100 0 00000 000000
Q ss_pred HHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccc--hhHHHHHHHHHHHHhhhcCCCCchhhhHH
Q 012365 269 NRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKD--DEMAMEYHFSEIFCQIATTDPPDVQIGLD 346 (465)
Q Consensus 269 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~A~~ 346 (465)
..+..-+ +..++.-...+-+.++++.|.+.+-.|..+... +.++...+.. .. -.+++-+..+
T Consensus 234 ~lh~Sal---------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al--~n-----~~~~p~~g~~ 297 (459)
T KOG4340|consen 234 VLHQSAL---------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQAL--MN-----MDARPTEGFE 297 (459)
T ss_pred HHHHHHH---------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHH--hc-----ccCCccccHH
Confidence 0000000 001111111223667777777777666543211 2222211111 11 1344555555
Q ss_pred hHHHHHhhcCCCC-cHHHHHHHHHHhHhhhhhhHHHHHHHH
Q 012365 347 LLQFIKDELGLPP-SRKCLDFLLGACVNARDLKRAHLIWKE 386 (465)
Q Consensus 347 ~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~ 386 (465)
-+.-.. ++.| -..||..++-.||+..-++.|-.++.+
T Consensus 298 KLqFLL---~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 298 KLQFLL---QQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHH---hcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 555554 4455 446888888888888888887776654
No 86
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.87 E-value=6.7e-07 Score=78.06 Aligned_cols=131 Identities=18% Similarity=0.175 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHH--HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012365 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEV--KSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALI 259 (465)
Q Consensus 182 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 259 (465)
+.......+..|.+.++++.|.+.++.+..-..+...+ ..+.+..+...+.+.+|.-+|+++.+. ..+++.+.+.+.
T Consensus 130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A 208 (290)
T PF04733_consen 130 SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLA 208 (290)
T ss_dssp CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHH
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHH
Confidence 55666778899999999999999999876554444332 233333333445799999999998765 457889999999
Q ss_pred HHHHccCcHHHHHHHHHHHcCCCC-CccchhhHhhHhhhcCCh-hHHHHHHHHHHH
Q 012365 260 EHLNSEGELNRLIQLLEEVHDPDY-WMDGCCRLILHCVRFKQL-SSATDLLKQLKD 313 (465)
Q Consensus 260 ~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~ 313 (465)
.+....|++++|.+++.+....+. .+++...++......|+. +.+.+.+..+..
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 999999999999999999877654 366666666666667766 667778888776
No 87
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.87 E-value=1.2e-07 Score=82.61 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=92.8
Q ss_pred HHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCch
Q 012365 262 LNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDV 341 (465)
Q Consensus 262 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 341 (465)
+...|++++|+++++.. ..++.....+..+.+.++++.|.+.++.|.+.. +..+...+..+++.. ..+ ...+
T Consensus 112 ~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l~qLa~awv~l-~~g-~e~~ 183 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSILTQLAEAWVNL-ATG-GEKY 183 (290)
T ss_dssp HCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHHHHHHHHHHHHH-HHT-TTCC
T ss_pred HHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHH-HhC-chhH
Confidence 34445555555444332 223333444444555555555555555555421 112222222222222 111 1467
Q ss_pred hhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh-hhHHHHHh
Q 012365 342 QIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNR-KSASKLLS 420 (465)
Q Consensus 342 ~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~ 420 (465)
.+|.-+|+++. ....+++.+.+.+..++...|++++|.+++++..+.+ +-++.++..++.+....|+. +.+.++++
T Consensus 184 ~~A~y~f~El~--~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 184 QDAFYIFEELS--DKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CHHHHHHHHHH--CCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHH--hccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 88888888876 3456788888889989999999999999999987653 66777888888888888887 66788888
Q ss_pred ccCCCCCC
Q 012365 421 KMPKDDPH 428 (465)
Q Consensus 421 ~m~~~~~~ 428 (465)
++....|.
T Consensus 261 qL~~~~p~ 268 (290)
T PF04733_consen 261 QLKQSNPN 268 (290)
T ss_dssp HCHHHTTT
T ss_pred HHHHhCCC
Confidence 88876664
No 88
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.86 E-value=8.2e-05 Score=69.04 Aligned_cols=388 Identities=13% Similarity=0.107 Sum_probs=211.3
Q ss_pred HHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHH
Q 012365 20 YSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDS 99 (465)
Q Consensus 20 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 99 (465)
.+...|+-++|.+....-.+..+. +.+.|+.+.-.+...+++++|.+.|......+ +-|..++.-+--.=++.++++.
T Consensus 50 ~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 50 TLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred hhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhh
Confidence 345567778888877776664443 56667766666666778888888888877765 5566777766666667777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHh------hCChhHHHHHHH
Q 012365 100 AYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN-VKPDSQTFSYLIHN------CSNEEDIIKYYE 172 (465)
Q Consensus 100 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~------~~~~~~~~~~~~ 172 (465)
.......+.+.. +.....|..+..++.-.|+...|..++++..+.. -.|+...|.....- ..+.|..+..++
T Consensus 128 ~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 128 YLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred HHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 777666665542 3345567777777777788888887777776543 24555554433322 122333344444
Q ss_pred HHHHcC-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHH-cC-------------------
Q 012365 173 QLKSAG-GQITKYV-FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALA-SH------------------- 230 (465)
Q Consensus 173 ~~~~~~-~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~------------------- 230 (465)
.+.+.. -..|... -..-...+.+.++.++|..++..+....++....|..+..++. -.
T Consensus 207 ~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r 286 (700)
T KOG1156|consen 207 HLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR 286 (700)
T ss_pred HHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc
Confidence 444321 1112111 1223455666677777777776644444444433333333332 11
Q ss_pred ---------------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHH----HHHcCCCC--------
Q 012365 231 ---------------GRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLL----EEVHDPDY-------- 283 (465)
Q Consensus 231 ---------------g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~----~~~~~~~~-------- 283 (465)
.-.+...+++..+.+.|+++- |..+...|-.....+-..++. ..+...+.
T Consensus 287 ~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~ 363 (700)
T KOG1156|consen 287 HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGK 363 (700)
T ss_pred cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccc
Confidence 112223344555556665432 223333232222221111111 11111110
Q ss_pred --Ccc----chhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCC
Q 012365 284 --WMD----GCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGL 357 (465)
Q Consensus 284 --~~~----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~ 357 (465)
.|. .+..++..+-+.|+++.|...++.... ..|..+-.+.+=...+.. .|++++|..++++.. +..
T Consensus 364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId-HTPTliEly~~KaRI~kH-----~G~l~eAa~~l~ea~-elD- 435 (700)
T KOG1156|consen 364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID-HTPTLIELYLVKARIFKH-----AGLLDEAAAWLDEAQ-ELD- 435 (700)
T ss_pred cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc-cCchHHHHHHHHHHHHHh-----cCChHHHHHHHHHHH-hcc-
Confidence 111 122345556688899999998888776 223333333222222222 588999999988887 322
Q ss_pred CCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChh--------HHHHHH--HHHHhcCChhhHHHHHhccC
Q 012365 358 PPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVL--------SYLWMY--KAFLASGNRKSASKLLSKMP 423 (465)
Q Consensus 358 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--------~~~~l~--~~~~~~g~~~~A~~~~~~m~ 423 (465)
.||...=.-...-..++.+.++|.++.....+.|. +.. .|-.+- .+|.+.|++.+|++-|..+.
T Consensus 436 ~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 436 TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 23433222344444567888888888888877664 322 333332 36778877777776555443
No 89
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=3.4e-05 Score=67.57 Aligned_cols=314 Identities=9% Similarity=0.012 Sum_probs=172.2
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 012365 37 MVQGELVPSTETINSILHACEE--SYEFNLVRRIYPMICH-HNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLM 113 (465)
Q Consensus 37 m~~~~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 113 (465)
|-....+|+..+....+.+++. .++...+...+-.+.. .-++-|+.....+..++...|+.++|+..|+.....+ +
T Consensus 185 m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-p 263 (564)
T KOG1174|consen 185 MHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-P 263 (564)
T ss_pred hhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-h
Confidence 3333344544444444544332 3333333333333322 2345677788888888888888888888888877643 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhh--CChhHHHH---HHHHHHHcCCCCCHHHHHH
Q 012365 114 PTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC--SNEEDIIK---YYEQLKSAGGQITKYVFMA 188 (465)
Q Consensus 114 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 188 (465)
-+........-.+...|+.+....+...+....- -+.. ..++.+| -...++.. +.+.-++.. +.+...+-.
T Consensus 264 y~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~--~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alil 339 (564)
T KOG1174|consen 264 DNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTAS--HWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALIL 339 (564)
T ss_pred hhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchh--hhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHh
Confidence 2222333333445567777777777766654210 0111 1112221 12222222 222222221 112333433
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHH-HccC
Q 012365 189 LINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALI-EHL-NSEG 266 (465)
Q Consensus 189 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~-~~~g 266 (465)
--..+...++.++|.-.|+....-.+.....|.-|+.+|...|++.+|.-.-+.....- ..+..+.+.+- ..| ....
T Consensus 340 KG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~ 418 (564)
T KOG1174|consen 340 KGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPR 418 (564)
T ss_pred ccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCch
Confidence 34677889999999999988555554455569999999999999999988776654431 13444443331 111 2223
Q ss_pred cHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHH
Q 012365 267 ELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLD 346 (465)
Q Consensus 267 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~ 346 (465)
.-++|.++++.-.+.. |........+.++... .|..+.++.
T Consensus 419 ~rEKAKkf~ek~L~~~----------------------------------P~Y~~AV~~~AEL~~~-----Eg~~~D~i~ 459 (564)
T KOG1174|consen 419 MREKAKKFAEKSLKIN----------------------------------PIYTPAVNLIAELCQV-----EGPTKDIIK 459 (564)
T ss_pred hHHHHHHHHHhhhccC----------------------------------CccHHHHHHHHHHHHh-----hCccchHHH
Confidence 3456666665544322 2222222222222222 356666666
Q ss_pred hHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHH
Q 012365 347 LLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSY 399 (465)
Q Consensus 347 ~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 399 (465)
+++.-. ...||....+.|.+.+...+.+.+|+..|....+.+ |.|..+.
T Consensus 460 LLe~~L---~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d-P~~~~sl 508 (564)
T KOG1174|consen 460 LLEKHL---IIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD-PKSKRTL 508 (564)
T ss_pred HHHHHH---hhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-ccchHHH
Confidence 666655 566777777788888888888888888888777652 3343343
No 90
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=6.8e-05 Score=68.02 Aligned_cols=396 Identities=12% Similarity=0.064 Sum_probs=230.6
Q ss_pred HHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHhccCCH
Q 012365 19 TYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPN-SETFRSMISLNVKIKDF 97 (465)
Q Consensus 19 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~ 97 (465)
.+.+..|+++.|+.+|-+....... |...|..-..++...|++++|.+=-.+-.+. .|+ ...|+....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 3556789999999999999887544 8888988999999999999988766665554 566 56899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH---HHHHHHHHHC---CCCCCHHHHHHHHHhhCCh-------
Q 012365 98 DSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA---LMVLKEMEQA---NVKPDSQTFSYLIHNCSNE------- 164 (465)
Q Consensus 98 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a---~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~------- 164 (465)
++|..-|.+-.+.. +-|...++-+..++.......+. -.++..+... ........|..++....+.
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999999887764 45566677777666111000000 0011111100 0001112233333322110
Q ss_pred ---hHHHHHHHHHH--------HcC-------CCC----------------------CHHHHHHHHHHHHhcCCHHHHHH
Q 012365 165 ---EDIIKYYEQLK--------SAG-------GQI----------------------TKYVFMALINAYTTCGEFEKARQ 204 (465)
Q Consensus 165 ---~~~~~~~~~~~--------~~~-------~~~----------------------~~~~~~~l~~~~~~~g~~~~a~~ 204 (465)
....+..-.+. ..+ ..| -..-...+.++..+..+++.|.+
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 11111111000 000 111 01123345566666667777777
Q ss_pred HHHH-hcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHHccCcHHHHHHHHH
Q 012365 205 VVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIA-------LIEHLNSEGELNRLIQLLE 276 (465)
Q Consensus 205 ~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-------ll~~~~~~g~~~~a~~~~~ 276 (465)
-+.. +... .... -++....+|...|.+......-....+.|-. ...-|+. +-.++.+.++++.+...+.
T Consensus 246 ~y~~a~el~-~~it-~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 246 HYAKALELA-TDIT-YLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHhHh-hhhH-HHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 7765 2333 2222 2566667777777777777666665555421 1112222 2235556677777777777
Q ss_pred HHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchh-HHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhc
Q 012365 277 EVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDE-MAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDEL 355 (465)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~ 355 (465)
+....-..++..+ +....+++....+...- ..|.. .....--..+|. .|++..|+..|.++. ..
T Consensus 323 kaLte~Rt~~~ls-------~lk~~Ek~~k~~e~~a~-~~pe~A~e~r~kGne~Fk------~gdy~~Av~~YteAI-kr 387 (539)
T KOG0548|consen 323 KALTEHRTPDLLS-------KLKEAEKALKEAERKAY-INPEKAEEEREKGNEAFK------KGDYPEAVKHYTEAI-KR 387 (539)
T ss_pred HHhhhhcCHHHHH-------HHHHHHHHHHHHHHHHh-hChhHHHHHHHHHHHHHh------ccCHHHHHHHHHHHH-hc
Confidence 6544332222111 12222333322222211 01111 011111222333 489999999999988 33
Q ss_pred CCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCChhHHHHH
Q 012365 356 GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQA 435 (465)
Q Consensus 356 ~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l~~ 435 (465)
. +-|...|..-.-+|.+.|.+..|+.-.+...+. -|+....|..=..++.-..+|++|.+.|++.++.+|....++..
T Consensus 388 ~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL-~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~ 465 (539)
T KOG0548|consen 388 D-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL-DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDG 465 (539)
T ss_pred C-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Confidence 3 336678888888899999999999888888876 36666677777777777889999999999999999876555555
Q ss_pred HHh
Q 012365 436 CKQ 438 (465)
Q Consensus 436 ~~~ 438 (465)
++.
T Consensus 466 ~~r 468 (539)
T KOG0548|consen 466 YRR 468 (539)
T ss_pred HHH
Confidence 444
No 91
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.78 E-value=0.00018 Score=68.16 Aligned_cols=410 Identities=12% Similarity=0.034 Sum_probs=233.3
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCCHHHH-------------------HHH----HHHHhhCCC
Q 012365 24 LLKVHVALDVVEQMVQGELVPSTETINSILHAC---EESYEFNLV-------------------RRI----YPMICHHNL 77 (465)
Q Consensus 24 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~~~~~~a-------------------~~~----~~~~~~~~~ 77 (465)
.++.+.++.-+.....++...+..++..+-..+ ...++.+++ .-. +.++....+
T Consensus 240 ~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~ 319 (799)
T KOG4162|consen 240 LSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKF 319 (799)
T ss_pred CCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhh
Confidence 455666666666665555554555444443331 222333333 211 122222334
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 012365 78 KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYL 157 (465)
Q Consensus 78 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 157 (465)
.-+..+|..|--+....|+++.+-+.|++....- .-....|+.+-..+...|....|..+++.-....-.|+..+--.+
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 5678889999889999999999999998876432 245667888888999999999999998876643323443333333
Q ss_pred HHh-hC-ChhHHHH---HHHHHHH----cCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHH-hcCCCCCh
Q 012365 158 IHN-CS-NEEDIIK---YYEQLKS----AGGQITKYVFMALINAYTTC-----------GEFEKARQVVLD-AEIPVKSR 216 (465)
Q Consensus 158 l~~-~~-~~~~~~~---~~~~~~~----~~~~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~-~~~~~~~~ 216 (465)
... |. +.+.+++ +-....+ ..-...+..|-.+.-+|... ....++.+.+++ ....+.++
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 332 33 3333332 2222222 11122333444443344321 123456666665 34444444
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcC-CCCCccchhhHhhHh
Q 012365 217 SEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD-PDYWMDGCCRLILHC 295 (465)
Q Consensus 217 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~ 295 (465)
...|. +.--|+..++.+.|.+..++..+.+-.-+...|..+.-.++..+++.+|+.+.+...+ .|.+......-+..-
T Consensus 479 ~~if~-lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 479 LVIFY-LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred hHHHH-HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 43333 4445667788999999999998886566788888888888889999999988876543 221100000000000
Q ss_pred hhcCChhHHHHHHHHHHHc----------------------------cc-------------------------------
Q 012365 296 VRFKQLSSATDLLKQLKDK----------------------------FK------------------------------- 316 (465)
Q Consensus 296 ~~~~~~~~a~~~~~~~~~~----------------------------~~------------------------------- 316 (465)
..-++.+++.+....+..- ..
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~ 637 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST 637 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence 0122222222221111110 00
Q ss_pred ---chhHHHHH------HHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCC-cHHHHHHHHHHhHhhhhhhHHHHHHHH
Q 012365 317 ---DDEMAMEY------HFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPP-SRKCLDFLLGACVNARDLKRAHLIWKE 386 (465)
Q Consensus 317 ---~~~~~~~~------~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~ 386 (465)
.+..+|+. +...++.. .++.++|...+.+.. ++.| ....|......+...|...+|.+.|..
T Consensus 638 ~~~~~~~~~~~~~~lwllaa~~~~~-----~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 638 VLPGPDSLWYLLQKLWLLAADLFLL-----SGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHHh-----cCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 00111110 11111111 355555655555555 4444 334455555666778889999999998
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCChhhHHH--HHhccCCCCCChhHHHHHHHhhccccc
Q 012365 387 YENAGLPYNVLSYLWMYKAFLASGNRKSASK--LLSKMPKDDPHVRFVIQACKQTYTIPS 444 (465)
Q Consensus 387 m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~~~~~~~~l~~~~~~~~~~~ 444 (465)
....+ |.++.+..++...+.+.|+..-|.+ ++.++++.||+.+......+......+
T Consensus 710 Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~G 768 (799)
T KOG4162|consen 710 ALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLG 768 (799)
T ss_pred HHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence 88763 6677799999999999998888888 999999999987666655555443333
No 92
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=0.00022 Score=69.69 Aligned_cols=274 Identities=16% Similarity=0.176 Sum_probs=151.5
Q ss_pred HHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHH---HHHH-----Hh-h-----------C
Q 012365 17 LITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYE-FNLVRR---IYPM-----IC-H-----------H 75 (465)
Q Consensus 17 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~---~~~~-----~~-~-----------~ 75 (465)
|+.-.-+.++.+--+..++...+.|.. |..++|+|.+.|..+++ ++..++ .|+. .. + +
T Consensus 844 Lv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYer 922 (1666)
T KOG0985|consen 844 LVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYER 922 (1666)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecc
Confidence 444455667777888888888888877 88899998888776543 222211 1111 11 1 1
Q ss_pred CCCCCH---------HHHHHHHHHHhccCCHHHH-----------HHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHH
Q 012365 76 NLKPNS---------ETFRSMISLNVKIKDFDSA-----------YSLLDDLKEMNLM--PTASMYNAIMAGYFRKKDVQ 133 (465)
Q Consensus 76 ~~~~~~---------~~~~~li~~~~~~g~~~~a-----------~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~ 133 (465)
| .-|. ..|-...+.+.+..+.+.- ..+.+...+.+++ .|+.--+..+.++...+-+.
T Consensus 923 G-qcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~ 1001 (1666)
T KOG0985|consen 923 G-QCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPN 1001 (1666)
T ss_pred c-CCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcH
Confidence 1 1111 1233333333333443322 2345555554432 35666677778888888888
Q ss_pred HHHHHHHHHHHCC--CCCCHHHHHHHHHhhCC---------------------------hhHHHHHHHHHHHcCCCCCHH
Q 012365 134 GALMVLKEMEQAN--VKPDSQTFSYLIHNCSN---------------------------EEDIIKYYEQLKSAGGQITKY 184 (465)
Q Consensus 134 ~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 184 (465)
+-.+++++..-.+ ..-+...-+.++-...+ .+-.++.|...++. ..+..
T Consensus 1002 eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf--~~n~~ 1079 (1666)
T KOG0985|consen 1002 ELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKF--DMNVS 1079 (1666)
T ss_pred HHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHh--cccHH
Confidence 8888888876322 11122222222211111 11122334444443 33555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 012365 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264 (465)
Q Consensus 185 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 264 (465)
..+.|+. .-+.++.|.+.-++. .. | ..|+.+..+-.+.|.+.+|++-|-+. -|+..|..++....+
T Consensus 1080 A~~VLie---~i~~ldRA~efAe~~--n~-p--~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~ 1145 (1666)
T KOG0985|consen 1080 AIQVLIE---NIGSLDRAYEFAERC--NE-P--AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASR 1145 (1666)
T ss_pred HHHHHHH---HhhhHHHHHHHHHhh--CC-h--HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHh
Confidence 5555543 335566666655421 11 1 13777777777777777777655432 356677777777777
Q ss_pred cCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHH
Q 012365 265 EGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLL 308 (465)
Q Consensus 265 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 308 (465)
.|.+++-.+.+...++..-.+..-..++.+|++.++..+.++++
T Consensus 1146 ~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1146 TGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred cCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHh
Confidence 77777777777766665555555566777777777766666554
No 93
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.74 E-value=2.8e-05 Score=71.45 Aligned_cols=261 Identities=13% Similarity=0.020 Sum_probs=155.3
Q ss_pred HHhcccCHHHHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCC
Q 012365 20 YSCDLLKVHVALDVVEQMVQGELVPSTETINS---ILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKD 96 (465)
Q Consensus 20 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 96 (465)
.+...|++++|.+.+++..+.. +.|...+.. ........+....+.+.++.. ....+........+...+...|+
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCC
Confidence 4456899999999999988763 224444442 111112245566666666551 12222334455566778889999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHH
Q 012365 97 FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKS 176 (465)
Q Consensus 97 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~ 176 (465)
+++|...+++..+.. +.+...+..+...+...|++++|...+++.....-.+.
T Consensus 130 ~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~-------------------------- 182 (355)
T cd05804 130 YDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSS-------------------------- 182 (355)
T ss_pred HHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCc--------------------------
Confidence 999999999998875 55677888899999999999999999998765321000
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC-CC-CChHHHH-H--HHHHHHHcCCChhHHHHHHHHHHH---cCC
Q 012365 177 AGGQITKYVFMALINAYTTCGEFEKARQVVLDAEI-PV-KSRSEVK-S--ALVSALASHGRTSDAIIVYEEIKE---AGC 248 (465)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~-~~~~~~~-~--~l~~~~~~~g~~~~a~~~~~~m~~---~~~ 248 (465)
......|..+...+...|++++|..++++... .+ ....... + .++.-+...|....+.++ +.+.. ...
T Consensus 183 ---~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~ 258 (355)
T cd05804 183 ---MLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHF 258 (355)
T ss_pred ---chhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhc
Confidence 01122344566778888999999999987422 12 1111111 1 223333444543333332 22211 111
Q ss_pred --CCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCC----------ccchhhHhhHhhhcCChhHHHHHHHHHHH
Q 012365 249 --NLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW----------MDGCCRLILHCVRFKQLSSATDLLKQLKD 313 (465)
Q Consensus 249 --~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 313 (465)
............++...|+.+.|..+++.+...... +.........+...|++++|.+.+.....
T Consensus 259 ~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 259 PDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred CcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111122235566778888898888888877542211 11112222334578888888888877665
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.70 E-value=0.0001 Score=76.81 Aligned_cols=237 Identities=12% Similarity=0.004 Sum_probs=137.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhc----CCCC--ChHHHHHHHHHHHHcCCChhHHHHHHHHHHHc----CCC--C-CH
Q 012365 186 FMALINAYTTCGEFEKARQVVLDAE----IPVK--SRSEVKSALVSALASHGRTSDAIIVYEEIKEA----GCN--L-EP 252 (465)
Q Consensus 186 ~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~--p-~~ 252 (465)
.+.+...+...|++++|...+++.. .... ....++..+...+...|+++.|...+++.... +.. + ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 3445566777888888888876521 1111 11123455666777888888888887775542 211 1 12
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHcCC----CCC--ccchhhHhhHhhhcCChhHHHHHHHHHHHc--ccchhHHHHH
Q 012365 253 RAVIALIEHLNSEGELNRLIQLLEEVHDP----DYW--MDGCCRLILHCVRFKQLSSATDLLKQLKDK--FKDDEMAMEY 324 (465)
Q Consensus 253 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~ 324 (465)
..+..+...+...|++++|...+.+.... +.. ...+..+.......|+++.|...+...... .......+..
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 23344455667778888888888776432 111 112223444556788888888888777542 1111111111
Q ss_pred HHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcH---HHHHHHHHHhHhhhhhhHHHHHHHHHHHc----CCCCC-h
Q 012365 325 HFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSR---KCLDFLLGACVNARDLKRAHLIWKEYENA----GLPYN-V 396 (465)
Q Consensus 325 ~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~---~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~ 396 (465)
........ .....|+.+.|...+.... ........ ..+..+..++...|+.++|...+++.... |.+++ .
T Consensus 654 ~~~~~~~~-~~~~~g~~~~A~~~l~~~~-~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a 731 (903)
T PRK04841 654 NADKVRLI-YWQMTGDKEAAANWLRQAP-KPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN 731 (903)
T ss_pred HHHHHHHH-HHHHCCCHHHHHHHHHhcC-CCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 11000000 0001478888888877665 21111111 11345666778889999999999988753 33332 2
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHhccCC
Q 012365 397 LSYLWMYKAFLASGNRKSASKLLSKMPK 424 (465)
Q Consensus 397 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 424 (465)
.++..+..+|.+.|+.++|...+.+.++
T Consensus 732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 732 RNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3666777888999999999999988764
No 95
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=1.2e-06 Score=81.89 Aligned_cols=222 Identities=14% Similarity=0.015 Sum_probs=176.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 012365 178 GGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIA 257 (465)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 257 (465)
+.+|-...-..+...+.+.|-...|..+|++.. .|..+|..|+..|+..+|..+..+-.++ +||+..|..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 345556666778889999999999999998632 3788999999999999999999988884 489999999
Q ss_pred HHHHHHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCC
Q 012365 258 LIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTD 337 (465)
Q Consensus 258 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 337 (465)
+........-+++|+++.+.....- -..+.....+.+++.++.+.|+.-.+-.+-...+|+..-..++..
T Consensus 463 LGDv~~d~s~yEkawElsn~~sarA-----~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql----- 532 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISARA-----QRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL----- 532 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHHH-----HHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH-----
Confidence 9999888888999999998765431 011111112578999999999987775444555555544444443
Q ss_pred CCchhhhHHhHHHHHhhcCCCCc-HHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHH
Q 012365 338 PPDVQIGLDLLQFIKDELGLPPS-RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSAS 416 (465)
Q Consensus 338 ~~~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 416 (465)
++++.|.+.|.... ...|| ...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|...+....+.|.+++|+
T Consensus 533 -ek~q~av~aF~rcv---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 533 -EKEQAAVKAFHRCV---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred -hhhHHHHHHHHHHh---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHH
Confidence 88999999999888 66775 5789999999999999999999999999986 667778888888888999999999
Q ss_pred HHHhccCC
Q 012365 417 KLLSKMPK 424 (465)
Q Consensus 417 ~~~~~m~~ 424 (465)
+.+.++..
T Consensus 608 ~A~~rll~ 615 (777)
T KOG1128|consen 608 KAYHRLLD 615 (777)
T ss_pred HHHHHHHH
Confidence 99998875
No 96
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=5.8e-05 Score=71.88 Aligned_cols=240 Identities=12% Similarity=0.206 Sum_probs=140.1
Q ss_pred CHHHHHHHHH--HHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-C--------CC
Q 012365 10 SSASYKKLIT--YSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHH-N--------LK 78 (465)
Q Consensus 10 ~~~~y~~li~--~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~--------~~ 78 (465)
|..|-.++++ .|...|+.+.|.+-.+.++ +...|..+.+.|.+.++++-|.-.+..|... | -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 3444455554 4667899999988887765 3568899999999998888888777776542 1 11
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012365 79 PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158 (465)
Q Consensus 79 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 158 (465)
|+ .+-....-.....|.+++|+.+|.+-+. |..|=+.|...|.|++|+++-+.=-+-.++.+-.-|..-+
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~L 868 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYL 868 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHH
Confidence 21 2222222334567889999999988775 4445566777889999988876533333333444444444
Q ss_pred HhhCChhHHHH-----------HHHHHHHc--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHH
Q 012365 159 HNCSNEEDIIK-----------YYEQLKSA--------GGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEV 219 (465)
Q Consensus 159 ~~~~~~~~~~~-----------~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 219 (465)
.+-+....+.+ +++.+.+. .-..|...|.-....+-..|+.+.|+.++...+ -
T Consensus 869 ear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~--------D 940 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK--------D 940 (1416)
T ss_pred HhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh--------h
Confidence 44333222221 22222221 012244555555555566788888877775311 1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHc
Q 012365 220 KSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279 (465)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 279 (465)
|-++++..|-.|+.++|-++-++- | |......|.+.|-..|++.+|..+|...+
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 455556666666666666554432 2 33344455666666666666666665543
No 97
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.68 E-value=0.00016 Score=62.01 Aligned_cols=215 Identities=11% Similarity=0.087 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHH
Q 012365 46 TETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN-AIMA 124 (465)
Q Consensus 46 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~li~ 124 (465)
..-.--+.+.+...|.+..|+.-|...++.+ +.+-.++-.-...|...|+...|..=+.+..+. .||-..-. --..
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 3334446666777788888888887776542 122223333345677778877777777777764 46633221 1224
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012365 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204 (465)
Q Consensus 125 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 204 (465)
.+.+.|.++.|..=|+...+.. |+..+- ..+..+...+.+- ......+..+.-.|+...|++
T Consensus 115 vllK~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~e~-------------~~l~~ql~s~~~~GD~~~ai~ 176 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHE--PSNGLV---LEAQSKLALIQEH-------------WVLVQQLKSASGSGDCQNAIE 176 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcC--CCcchh---HHHHHHHHhHHHH-------------HHHHHHHHHHhcCCchhhHHH
Confidence 5678888888888888887653 322111 1111111111100 011122333445566666666
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCC
Q 012365 205 VVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPD 282 (465)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 282 (465)
....+-...+-+.+.|..-..+|...|.+..|+.-++...+-.- -+..++.-+-..+...|+.+.++..+++..+.+
T Consensus 177 ~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld 253 (504)
T KOG0624|consen 177 MITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKLD 253 (504)
T ss_pred HHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC
Confidence 65552222222222355556666666666666655544443321 234444455555666666666666666665543
No 98
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=0.00034 Score=64.44 Aligned_cols=51 Identities=16% Similarity=0.177 Sum_probs=39.9
Q ss_pred hHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccC
Q 012365 371 CVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMP 423 (465)
Q Consensus 371 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 423 (465)
-.+.|+.++|..+++++.+. .++|..+...++.+|++. +.+.|..+-+++.
T Consensus 468 ~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 468 KLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 34568889999999999886 388888899999888876 4677777776655
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.60 E-value=0.00029 Score=60.48 Aligned_cols=322 Identities=11% Similarity=0.109 Sum_probs=179.8
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHhhCCCCCCHHH-HHHHHHH
Q 012365 15 KKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSIL---HACEESYEFNLVRRIYPMICHHNLKPNSET-FRSMISL 90 (465)
Q Consensus 15 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~ 90 (465)
--+-..+..+|++..|+.-|....+. |+..|-.+. ..|...|+-..|+.=++..++. +||-.. --.-...
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchh
Confidence 34556677788999999999988774 333444443 4577788888888888888776 577543 2334456
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhh--CChhHHH
Q 012365 91 NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC--SNEEDII 168 (465)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~~~ 168 (465)
+.+.|.++.|+.=|+...+.. |+..+ ...++.+.--.++-..+..++. +++ +....+.
T Consensus 116 llK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~~l~~ql~---------------s~~~~GD~~~ai 175 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHWVLVQQLK---------------SASGSGDCQNAI 175 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHHHHHHHHH---------------HHhcCCchhhHH
Confidence 789999999999999998764 43221 1222222222222222222222 111 1222233
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCC
Q 012365 169 KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC 248 (465)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 248 (465)
.....+.+.. +.+...|..-..+|...|+...|+.=++....-..+...++--+-..+...|+.+.++...++..+-+
T Consensus 176 ~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld- 253 (504)
T KOG0624|consen 176 EMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD- 253 (504)
T ss_pred HHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC-
Confidence 3444444433 34667777778899999999999888876433333333345567777888999999999999888755
Q ss_pred CCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHH
Q 012365 249 NLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSE 328 (465)
Q Consensus 249 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 328 (465)
||....... |-+ +.+..+.++.|.+ ..+.+++.+++...+...+.. |....+..-...
T Consensus 254 -pdHK~Cf~~---YKk---lkKv~K~les~e~--------------~ie~~~~t~cle~ge~vlk~e-p~~~~ir~~~~r 311 (504)
T KOG0624|consen 254 -PDHKLCFPF---YKK---LKKVVKSLESAEQ--------------AIEEKHWTECLEAGEKVLKNE-PEETMIRYNGFR 311 (504)
T ss_pred -cchhhHHHH---HHH---HHHHHHHHHHHHH--------------HHhhhhHHHHHHHHHHHHhcC-Ccccceeeeeeh
Confidence 776532221 111 1122222222211 013445555555555444421 111111111122
Q ss_pred HHHhhhcCCCCchhhhHHhHHHHHhhcCCCCc-HHHHHHHHHHhHhhhhhhHHHHHHHHHHHc
Q 012365 329 IFCQIATTDPPDVQIGLDLLQFIKDELGLPPS-RKCLDFLLGACVNARDLKRAHLIWKEYENA 390 (465)
Q Consensus 329 ~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 390 (465)
.++.|. ...+++.+|++.-.++. .+.|+ +.++.--..+|.-...++.|..-|+...+.
T Consensus 312 ~~c~C~-~~d~~~~eAiqqC~evL---~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 312 VLCTCY-REDEQFGEAIQQCKEVL---DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred eeeecc-cccCCHHHHHHHHHHHH---hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 222221 22455666665555555 45554 455555555666666666666666666654
No 100
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.59 E-value=0.0003 Score=68.67 Aligned_cols=396 Identities=10% Similarity=0.003 Sum_probs=202.8
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH--HHHHHH
Q 012365 12 ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSET--FRSMIS 89 (465)
Q Consensus 12 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~ 89 (465)
..|..|-+.|+...+..+|.+.|+..-+.... +..........+++..+++.|..+.-..-+.. +.-... |...--
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhccc
Confidence 56777888888877888888888888775433 56667777778888888888877733222211 111111 222223
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHh-----hCCh
Q 012365 90 LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-----CSNE 164 (465)
Q Consensus 90 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-----~~~~ 164 (465)
.|.+.++...|..-|+...... |.|...|..+..+|...|++..|+++|.+.... .|+.. |.....+ .++.
T Consensus 571 yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~-y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSK-YGRFKEAVMECDNGKY 646 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhH-HHHHHHHHHHHHhhhH
Confidence 3555566666666666555443 456667777777777777777777777665432 33321 1111111 1111
Q ss_pred hHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhcCCHHH--------------------------------HHHHH
Q 012365 165 EDIIKYYEQLKSA------GGQITKYVFMALINAYTTCGEFEK--------------------------------ARQVV 206 (465)
Q Consensus 165 ~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~--------------------------------a~~~~ 206 (465)
..+...+..+... +..--..++..+...+.-.|-..+ |..+|
T Consensus 647 keald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f 726 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIF 726 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHH
Confidence 1111111100000 000000000000000000000000 00011
Q ss_pred HHhc--------------------CCCCCh------------------HHHHHHHHHHHHc----CC----ChhHHHHHH
Q 012365 207 LDAE--------------------IPVKSR------------------SEVKSALVSALAS----HG----RTSDAIIVY 240 (465)
Q Consensus 207 ~~~~--------------------~~~~~~------------------~~~~~~l~~~~~~----~g----~~~~a~~~~ 240 (465)
-..+ ..+++. ..+|..+...|.+ .| +...|+..+
T Consensus 727 ~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~ 806 (1238)
T KOG1127|consen 727 SQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCC 806 (1238)
T ss_pred HHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHH
Confidence 0000 000000 1112222222222 11 122455555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCC-CccchhhHhhHhhhcCChhHHHHHHHHHHHcccchh
Q 012365 241 EEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY-WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDE 319 (465)
Q Consensus 241 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 319 (465)
....+.. .+...+...+......|++.-+...|-+-....+ ....|..+...+.+..+++-|...|.....-.+.+.
T Consensus 807 KkaV~L~--ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl 884 (1238)
T KOG1127|consen 807 KKAVSLC--ANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNL 884 (1238)
T ss_pred HHHHHHh--hccHHHHHHHHHhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhh
Confidence 5544432 3334444444445555666666665554443332 234566777778899999999999999988777777
Q ss_pred HHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHh---hcCCCCcHHHHHHHHHHhHhhhhhhHHH----------HHHHH
Q 012365 320 MAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKD---ELGLPPSRKCLDFLLGACVNARDLKRAH----------LIWKE 386 (465)
Q Consensus 320 ~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~---~~~~~p~~~~~~~ll~~~~~~g~~~~A~----------~~~~~ 386 (465)
..|-..-...-. .|+.-+++.+|..-.. ..|-.|+..-|-....-....|+.++-. -.++.
T Consensus 885 ~~WlG~Ali~ea------vG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~ 958 (1238)
T KOG1127|consen 885 VQWLGEALIPEA------VGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSY 958 (1238)
T ss_pred HHHHHHHHhHHH------HHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHH
Confidence 777554333222 2778888888876321 2444555555544333344555544322 22333
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhcc
Q 012365 387 YENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422 (465)
Q Consensus 387 m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 422 (465)
... |.|.+...|.+......+.+.+++|..+..+.
T Consensus 959 yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 959 YFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333 46777888988888888888888887777664
No 101
>PLN02789 farnesyltranstransferase
Probab=98.57 E-value=0.00015 Score=64.38 Aligned_cols=222 Identities=9% Similarity=0.001 Sum_probs=143.8
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 012365 12 ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY-EFNLVRRIYPMICHHNLKPNSETFRSMISL 90 (465)
Q Consensus 12 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 90 (465)
.+++.+-..+...++.++|+.+++.+.+.... +..+|+.--.++...| ++++++..++.+.+.+ +-+..+|+..-.+
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 35566666777788999999999999886433 4456666656666666 6799999999998876 4566678766655
Q ss_pred HhccCCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHH
Q 012365 91 NVKIKDF--DSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII 168 (465)
Q Consensus 91 ~~~~g~~--~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 168 (465)
+.+.|+. +++..+++++.+.+ +.|..+|+...-.+...|+++++++.++++.+.+... ...|+.....+.+.+.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N-~sAW~~R~~vl~~~~~-- 191 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN-NSAWNQRYFVITRSPL-- 191 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc-hhHHHHHHHHHHhccc--
Confidence 6666653 67888888888776 6788999999999999999999999999998765322 2222211111100000
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHcC----CChhHHHHHHHHH
Q 012365 169 KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASH----GRTSDAIIVYEEI 243 (465)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m 243 (465)
.|- .....++..+...+ +...+.+.. .|+-+...+... +...+|.+.+.+.
T Consensus 192 --------l~~---------------~~~~~e~el~y~~~aI~~~P~N~S-aW~Yl~~ll~~~~~~l~~~~~~~~~~~~~ 247 (320)
T PLN02789 192 --------LGG---------------LEAMRDSELKYTIDAILANPRNES-PWRYLRGLFKDDKEALVSDPEVSSVCLEV 247 (320)
T ss_pred --------ccc---------------ccccHHHHHHHHHHHHHhCCCCcC-HHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence 000 00012334444433 344444433 477777777663 3445688888777
Q ss_pred HHcCCCCCHHHHHHHHHHHHc
Q 012365 244 KEAGCNLEPRAVIALIEHLNS 264 (465)
Q Consensus 244 ~~~~~~p~~~~~~~ll~~~~~ 264 (465)
.+.++ .++.....|+..|+.
T Consensus 248 ~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 248 LSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred hcccC-CcHHHHHHHHHHHHh
Confidence 66542 356677777777765
No 102
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=0.00011 Score=60.74 Aligned_cols=180 Identities=12% Similarity=0.123 Sum_probs=123.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccc
Q 012365 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKD 317 (465)
Q Consensus 238 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 317 (465)
++.+.+.......+......-...|++.|++++|++..+. +..++....-+....+..+++.|.+.++.|.+. .
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i--d 167 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL----GENLEAAALNVQILLKMHRFDLAEKELKKMQQI--D 167 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--c
Confidence 3444454444433333333444567888899988887776 233444444455566888899999999999873 2
Q ss_pred hhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChh
Q 012365 318 DEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVL 397 (465)
Q Consensus 318 ~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 397 (465)
+..+.+-+..+++.. +.. .+.+..|.-+|++|. .+..|++.+.+....++...|++++|..++++..... ..++.
T Consensus 168 ed~tLtQLA~awv~l-a~g-gek~qdAfyifeE~s--~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpe 242 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKL-ATG-GEKIQDAFYIFEELS--EKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPE 242 (299)
T ss_pred hHHHHHHHHHHHHHH-hcc-chhhhhHHHHHHHHh--cccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHH
Confidence 333333344443333 322 356899999999998 3488999999999999999999999999999999873 66777
Q ss_pred HHHHHHHHHHhcCCh-hhHHHHHhccCCCCCC
Q 012365 398 SYLWMYKAFLASGNR-KSASKLLSKMPKDDPH 428 (465)
Q Consensus 398 ~~~~l~~~~~~~g~~-~~A~~~~~~m~~~~~~ 428 (465)
+...++-.-...|.. +...+.+.+.....|.
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERNLSQLKLSHPE 274 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCc
Confidence 777777666666654 4456777777766664
No 103
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.52 E-value=1.2e-05 Score=80.55 Aligned_cols=204 Identities=13% Similarity=0.095 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHh--cCCCCCh---HHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 012365 183 KYVFMALINAYTTCGEFEKARQVVLDA--EIPVKSR---SEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIA 257 (465)
Q Consensus 183 ~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 257 (465)
...|-..|......+++++|.+++++. .+..+.. ...|.++++.-...|.-+...++|++..+.. -....|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHH
Confidence 345555555556666666666666552 1111111 1135555555555555555566666655543 11233455
Q ss_pred HHHHHHccCcHHHHHHHHHHHcCC-CCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcC
Q 012365 258 LIEHLNSEGELNRLIQLLEEVHDP-DYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATT 336 (465)
Q Consensus 258 ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 336 (465)
|...|.+.++.++|.++++.|.+. +.....|...+....+..+-+.|..++.+..+..+.
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk------------------- 1596 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK------------------- 1596 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch-------------------
Confidence 555555555555555555555432 223334444444444444555555555544442111
Q ss_pred CCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHH
Q 012365 337 DPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSAS 416 (465)
Q Consensus 337 ~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 416 (465)
+-......-.+..-.+.|+.++++.+|+..... .|-....|+.+++.-.+.|+.+.++
T Consensus 1597 ---------------------~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR 1654 (1710)
T KOG1070|consen 1597 ---------------------QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVR 1654 (1710)
T ss_pred ---------------------hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHH
Confidence 001112222233334455555555555555543 3444455555555555555555555
Q ss_pred HHHhccCCCCCCh
Q 012365 417 KLLSKMPKDDPHV 429 (465)
Q Consensus 417 ~~~~~m~~~~~~~ 429 (465)
.+|+++...++..
T Consensus 1655 ~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1655 DLFERVIELKLSI 1667 (1710)
T ss_pred HHHHHHHhcCCCh
Confidence 5555555544433
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.52 E-value=1.1e-05 Score=73.50 Aligned_cols=214 Identities=15% Similarity=0.130 Sum_probs=123.4
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 012365 56 CEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135 (465)
Q Consensus 56 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 135 (465)
+.+.|++.+|.-.|+..++.. +-+...|..|...-+..++-..|+..+.+..+.+ +-|....-.|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 456677888888888877765 5567788888888888888888888888877665 45666777777788888888888
Q ss_pred HHHHHHHHHCCCC-----C---CHHHHHHHHHhhCCh---hHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 012365 136 LMVLKEMEQANVK-----P---DSQTFSYLIHNCSNE---EDIIK-YYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203 (465)
Q Consensus 136 ~~~~~~m~~~~~~-----p---~~~~~~~ll~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 203 (465)
++.++.-.....+ + +...-.. ..+... ..+.+ +++.....+..+|+.+...|--.|--.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 8888776543200 0 0000000 011111 11222 2333333444456666666666666666666666
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCcHHHHHHHH
Q 012365 204 QVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP-RAVIALIEHLNSEGELNRLIQLL 275 (465)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~ 275 (465)
+.|+..-...+.+...||.|..+++...+.++|+.-|++..+- +|+. .....|--+|...|.+++|.+.|
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 6666533333333444666666666666666666666666653 2432 12223333444444444444433
No 105
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.51 E-value=5.2e-05 Score=71.33 Aligned_cols=111 Identities=16% Similarity=0.157 Sum_probs=69.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHH
Q 012365 190 INAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN 269 (465)
Q Consensus 190 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 269 (465)
+.+......|.+|+.+++.+.-....+. .|..+...|...|+++.|.++|.+. ..++-.|..|.+.|+++
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~-yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASG-YYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccc-cchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 4455566777888877775433322222 2677778888888888888887653 23445667788888888
Q ss_pred HHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHH
Q 012365 270 RLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQ 310 (465)
Q Consensus 270 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 310 (465)
.|.++-.+.....-.+..|..-..-.-+.|++.+|.+++-.
T Consensus 809 da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyit 849 (1636)
T KOG3616|consen 809 DAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYIT 849 (1636)
T ss_pred HHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEE
Confidence 88887777665443333333333334456666666666543
No 106
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=0.00015 Score=65.94 Aligned_cols=351 Identities=14% Similarity=0.104 Sum_probs=219.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCH
Q 012365 54 HACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTA-SMYNAIMAGYFRKKDV 132 (465)
Q Consensus 54 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~ 132 (465)
.+.+..|+++.|...|-...... ++|...|+.-..+|+..|++++|.+=-.+-++. .|+. -.|+-...++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 45667899999999999998877 678999999999999999999998766665554 5764 5789999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHH------HHHHHHHcC---CCCCHHHHHHHHHH----------H
Q 012365 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK------YYEQLKSAG---GQITKYVFMALINA----------Y 193 (465)
Q Consensus 133 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~l~~~----------~ 193 (465)
++|+.-|.+-.+.. +.+...++-+..+..-.....+ ++..+.... .......|..++.. |
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999999866542 2234455555544411000000 111111000 00011111111111 1
Q ss_pred HhcCCHHHHHHHHHH-----------h-----cCC------CCCh--H-----------HHHHHHHHHHHcCCChhHHHH
Q 012365 194 TTCGEFEKARQVVLD-----------A-----EIP------VKSR--S-----------EVKSALVSALASHGRTSDAII 238 (465)
Q Consensus 194 ~~~g~~~~a~~~~~~-----------~-----~~~------~~~~--~-----------~~~~~l~~~~~~~g~~~~a~~ 238 (465)
..-.++..+.-.+.. + ..+ +.+. . .-...+.++..+..+++.|++
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 111111222211110 0 000 0000 0 013456667777788888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCcc--------chhhHhhHhhhcCChhHHHHHHHH
Q 012365 239 VYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD--------GCCRLILHCVRFKQLSSATDLLKQ 310 (465)
Q Consensus 239 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~a~~~~~~ 310 (465)
-+....+.. -+..-++..-.++...|.+...........+.|.... .+..+..+|.+.++++.++..|.+
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 888887765 3444455666778888888877777666655553221 222344467778888999999888
Q ss_pred HHHcccc-hhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHH-HHHHHHHhHhhhhhhHHHHHHHHHH
Q 012365 311 LKDKFKD-DEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKC-LDFLLGACVNARDLKRAHLIWKEYE 388 (465)
Q Consensus 311 ~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~g~~~~A~~~~~~m~ 388 (465)
....... +...- ....++++...+... -+.|.... ...-...+.+.|++..|...+.+++
T Consensus 324 aLte~Rt~~~ls~---------------lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 324 ALTEHRTPDLLSK---------------LKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred HhhhhcCHHHHHH---------------HHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 6653222 11111 133444444444333 44554421 1223566788999999999999999
Q ss_pred HcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCCh
Q 012365 389 NAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHV 429 (465)
Q Consensus 389 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 429 (465)
+.. |.|...|....-+|.+.|.+..|.+=.+...+.+|.|
T Consensus 386 kr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~ 425 (539)
T KOG0548|consen 386 KRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNF 425 (539)
T ss_pred hcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchH
Confidence 985 8899999999999999999999999999999999876
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.48 E-value=2.9e-05 Score=64.03 Aligned_cols=131 Identities=8% Similarity=-0.031 Sum_probs=87.2
Q ss_pred cCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCC-cHHHHHHHHHHh-Hhhh
Q 012365 298 FKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPP-SRKCLDFLLGAC-VNAR 375 (465)
Q Consensus 298 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~-~~~g 375 (465)
.++.++++..++......+.+...|..+-..+.. .|++++|...|++.. ...| +...+..+..++ ...|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~------~g~~~~A~~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g 122 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLW------RNDYDNALLAYRQAL---QLRGENAELYAALATVLYYQAG 122 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH------CCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHhcC
Confidence 4555666666666666444555555544333333 378888888887777 4445 455666666653 5666
Q ss_pred h--hhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCC---hhHHHHHHHh
Q 012365 376 D--LKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPH---VRFVIQACKQ 438 (465)
Q Consensus 376 ~--~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~l~~~~~ 438 (465)
+ .++|.+++++..+.+ |.+..++..+...+.+.|++++|...|+++++.++. -..+|.+...
T Consensus 123 ~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~i~~ 189 (198)
T PRK10370 123 QHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVESINM 189 (198)
T ss_pred CCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Confidence 6 488888888888873 667788888888888899999999999888876553 2345554443
No 108
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.47 E-value=1.6e-05 Score=68.27 Aligned_cols=62 Identities=11% Similarity=0.089 Sum_probs=48.7
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCC
Q 012365 366 FLLGACVNARDLKRAHLIWKEYENAG--LPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDP 427 (465)
Q Consensus 366 ~ll~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 427 (465)
.+...+.+.|++.+|...+++..+.. .+.....+..+..++.+.|++++|..+++.+..+.|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 45556788899999999999998751 123456888999999999999999999888766543
No 109
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.47 E-value=9.3e-05 Score=63.50 Aligned_cols=183 Identities=12% Similarity=0.086 Sum_probs=98.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-HH---
Q 012365 45 STETINSILHACEESYEFNLVRRIYPMICHHNLKPNS---ETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPT-AS--- 117 (465)
Q Consensus 45 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~--- 117 (465)
....+..+...+...|+++.|...++.+.+.. +.+. .++..+..++.+.|++++|...++++.+.. |+ ..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~ 108 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADY 108 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHH
Confidence 44566667777778888888888888877653 2222 456667777888888888888888887653 32 21
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 012365 118 MYNAIMAGYFRK--------KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMAL 189 (465)
Q Consensus 118 ~~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (465)
++..+..++.+. |+.++|.+.|+.+.+. .|+.......+... .... ... ......+
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~---~~~~---~~~--------~~~~~~~ 172 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM---DYLR---NRL--------AGKELYV 172 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH---HHHH---HHH--------HHHHHHH
Confidence 344444445443 6677788888777654 23322111111000 0000 000 0001123
Q ss_pred HHHHHhcCCHHHHHHHHHHhc-CCC--CChHHHHHHHHHHHHcCCChhHHHHHHHHHHHc
Q 012365 190 INAYTTCGEFEKARQVVLDAE-IPV--KSRSEVKSALVSALASHGRTSDAIIVYEEIKEA 246 (465)
Q Consensus 190 ~~~~~~~g~~~~a~~~~~~~~-~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 246 (465)
...+.+.|++++|...++... ..+ +.....+..+..++...|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344556666666666665521 111 111223555666666666666666666555543
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.45 E-value=2.1e-05 Score=64.82 Aligned_cols=125 Identities=9% Similarity=0.128 Sum_probs=95.3
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HhccCC--HHHH
Q 012365 24 LLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL-NVKIKD--FDSA 100 (465)
Q Consensus 24 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~--~~~a 100 (465)
.++.+++...++...+.. +.|...|..+...+...|+++.|...|+...+.. +.+...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 344566666666666654 3478888888888889999999999999888876 4577777777775 466676 4889
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 012365 101 YSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152 (465)
Q Consensus 101 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 152 (465)
.+++++..+.+ +.+...+..+...+.+.|++++|...|+++.+.. +|+..
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~ 179 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVN 179 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcc
Confidence 99999888776 5577888888888899999999999999988653 34443
No 111
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.42 E-value=0.0004 Score=65.61 Aligned_cols=194 Identities=11% Similarity=0.122 Sum_probs=110.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 012365 53 LHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132 (465)
Q Consensus 53 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 132 (465)
+.+....+.|.+|..+++.+.... .-..-|..+..-|+..|+++.|+++|-+.- .++--|..|.++|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 344456678888888888877654 234557777888899999999998885432 356678889999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCC
Q 012365 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIP 212 (465)
Q Consensus 133 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 212 (465)
+.|.++-++... -......|..-..-.-+.|...+.-+.....| .|+ ..|.+|-+.|..+..+++..+ -.
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~-~p~-----~aiqmydk~~~~ddmirlv~k--~h 877 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG-EPD-----KAIQMYDKHGLDDDMIRLVEK--HH 877 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc-Cch-----HHHHHHHhhCcchHHHHHHHH--hC
Confidence 999888766542 12222333222221222222211111111122 222 245677777777777777763 23
Q ss_pred CCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 012365 213 VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276 (465)
Q Consensus 213 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 276 (465)
+.....|...+..-|-..|+...|..-|-+..+ |.+-++.|-.++.+++|.++-+
T Consensus 878 ~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 878 GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred hhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHh
Confidence 333333455566666667777777665544322 2233444445555555554433
No 112
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.40 E-value=2.4e-05 Score=60.93 Aligned_cols=94 Identities=4% Similarity=-0.065 Sum_probs=64.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 012365 49 INSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128 (465)
Q Consensus 49 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 128 (465)
+..+..++...|++++|...|+...... +.+...|..+..++.+.|++++|...|++....+ +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4445556666777777777777776654 4566677777777777777777777777776654 4566667777777777
Q ss_pred cCCHHHHHHHHHHHHH
Q 012365 129 KKDVQGALMVLKEMEQ 144 (465)
Q Consensus 129 ~g~~~~a~~~~~~m~~ 144 (465)
.|++++|...|+...+
T Consensus 105 ~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 105 MGEPGLAREAFQTAIK 120 (144)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777777665
No 113
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.39 E-value=5.6e-07 Score=50.81 Aligned_cols=33 Identities=27% Similarity=0.526 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCC
Q 012365 13 SYKKLITYSCDLLKVHVALDVVEQMVQGELVPS 45 (465)
Q Consensus 13 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 45 (465)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 789999999999999999999999999998887
No 114
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.003 Score=62.15 Aligned_cols=296 Identities=13% Similarity=0.158 Sum_probs=161.0
Q ss_pred cccCCCCCHHHHH------HHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHH-------------HHHHHHHHhcCCHH
Q 012365 3 AKLEITPSSASYK------KLITYSCDLLKVHVALDVVEQMVQGELVPSTETI-------------NSILHACEESYEFN 63 (465)
Q Consensus 3 ~~~~~~p~~~~y~------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-------------~~ll~~~~~~~~~~ 63 (465)
.++++.+|...|- ..|..|.+.-++.+.-.+.-.+..-.+ +.... ..|+.-+-+.+++.
T Consensus 778 DRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC--~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLk 855 (1666)
T KOG0985|consen 778 DRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDC--SEDFIKNLILSVRGQFPVDELVEEVEKRNRLK 855 (1666)
T ss_pred cccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCC--cHHHHHHHHHHHhccCChHHHHHHHHhhhhHH
Confidence 4677788877663 256667766665555555555544322 22222 23344456677888
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHH-HH---HHHH-----H-HHc-----------C--------CCC
Q 012365 64 LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSA-YS---LLDD-----L-KEM-----------N--------LMP 114 (465)
Q Consensus 64 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~---~~~~-----m-~~~-----------~--------~~~ 114 (465)
.-...++...+.| ..++.++|+|...|...++-.+- .+ .|+. . .++ | +..
T Consensus 856 lLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcN 934 (1666)
T KOG0985|consen 856 LLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCN 934 (1666)
T ss_pred HHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcC
Confidence 8888889888888 47999999999988766442221 10 1111 0 111 1 011
Q ss_pred CHHHHHHHHHHHHhcCC---HHHH--------HHHHHHHHHCCCC--CCHHHHHHHHHhhCChh---HHHHHHHHHHHcC
Q 012365 115 TASMYNAIMAGYFRKKD---VQGA--------LMVLKEMEQANVK--PDSQTFSYLIHNCSNEE---DIIKYYEQLKSAG 178 (465)
Q Consensus 115 ~~~~~~~li~~~~~~g~---~~~a--------~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~---~~~~~~~~~~~~~ 178 (465)
....|-...+-+.+..+ |.+. ..+.++..+.+++ .|+.-.+....++...+ +..++++.+.-..
T Consensus 935 eNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~ 1014 (1666)
T KOG0985|consen 935 ENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDN 1014 (1666)
T ss_pred chhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCC
Confidence 11223333333333333 2222 2455555544432 23444444444443332 2233333332111
Q ss_pred --CCCCHHHHHHHH---------------------------HHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc
Q 012365 179 --GQITKYVFMALI---------------------------NAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALAS 229 (465)
Q Consensus 179 --~~~~~~~~~~l~---------------------------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (465)
+.-+...-|.|+ ..+..++-+++|..+|+....... ..+.|+.-
T Consensus 1015 S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~----A~~VLie~--- 1087 (1666)
T KOG0985|consen 1015 SVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVS----AIQVLIEN--- 1087 (1666)
T ss_pred cccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHH----HHHHHHHH---
Confidence 111112222222 233344556666666663222111 12333332
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHH
Q 012365 230 HGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLK 309 (465)
Q Consensus 230 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 309 (465)
.+..+.|.++-++. -.+..|+.+..+-.+.|.+.+|.+-|-...+ |..|..++..+.+.|.+++-.+++.
T Consensus 1088 i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyikadD----ps~y~eVi~~a~~~~~~edLv~yL~ 1157 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIKADD----PSNYLEVIDVASRTGKYEDLVKYLL 1157 (1666)
T ss_pred hhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHhcCC----cHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 24455555544433 2577889999999999999999887766544 7788899999999999999999998
Q ss_pred HHHHcccch
Q 012365 310 QLKDKFKDD 318 (465)
Q Consensus 310 ~~~~~~~~~ 318 (465)
..+++...+
T Consensus 1158 MaRkk~~E~ 1166 (1666)
T KOG0985|consen 1158 MARKKVREP 1166 (1666)
T ss_pred HHHHhhcCc
Confidence 877754443
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.38 E-value=0.00014 Score=60.12 Aligned_cols=158 Identities=13% Similarity=0.090 Sum_probs=106.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 012365 50 NSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129 (465)
Q Consensus 50 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 129 (465)
..+-..+.-.|+-+....+........ +.|....+..+....+.|++..|...|.+..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 556666777788888887777654432 4566777778888899999999999999887665 78899999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 012365 130 KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA 209 (465)
Q Consensus 130 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 209 (465)
|+.++|..-|.+..+.. |+ ++..++.+.-.+.-.|+.+.|..++...
T Consensus 148 Gr~~~Ar~ay~qAl~L~--~~-------------------------------~p~~~nNlgms~~L~gd~~~A~~lll~a 194 (257)
T COG5010 148 GRFDEARRAYRQALELA--PN-------------------------------EPSIANNLGMSLLLRGDLEDAETLLLPA 194 (257)
T ss_pred cChhHHHHHHHHHHHhc--cC-------------------------------CchhhhhHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998887642 21 2334444444455556666666666553
Q ss_pred cCCCCChHHHHHHHHHHHHcCCChhHHHHHHHH
Q 012365 210 EIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242 (465)
Q Consensus 210 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 242 (465)
...+..+..+-..+.......|+++.|.++...
T Consensus 195 ~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 195 YLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 333333333344455555556666666555443
No 116
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.37 E-value=5.8e-07 Score=50.33 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCC
Q 012365 12 ASYKKLITYSCDLLKVHVALDVVEQMVQGELVP 44 (465)
Q Consensus 12 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 44 (465)
.+||.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 117
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.36 E-value=2.3e-05 Score=61.01 Aligned_cols=107 Identities=10% Similarity=-0.098 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 012365 11 SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL 90 (465)
Q Consensus 11 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 90 (465)
+..+..+...+...|++++|...|+......+ .+...+..+..++...|++++|...|+...+.+ +.+...+..+..+
T Consensus 24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~ 101 (144)
T PRK15359 24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVC 101 (144)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 33456677888899999999999999988753 378888999999999999999999999999876 6688999999999
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 012365 91 NVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120 (465)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 120 (465)
+.+.|++++|...|+...... +.+...|.
T Consensus 102 l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~ 130 (144)
T PRK15359 102 LKMMGEPGLAREAFQTAIKMS-YADASWSE 130 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 999999999999999988764 33344443
No 118
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.35 E-value=0.0035 Score=65.62 Aligned_cols=369 Identities=10% Similarity=-0.044 Sum_probs=170.3
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHh
Q 012365 14 YKKLITYSCDLLKVHVALDVVEQMVQGELVPS-TETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92 (465)
Q Consensus 14 y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 92 (465)
+......+...|++.+|....... +..+. ..............|++..+...++.+.......++.........+.
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a---~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAA---GDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHC---CCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 444455566677777666544332 11100 01111122234445666666666655422111112222233344445
Q ss_pred ccCCHHHHHHHHHHHHHcC--C----CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHH-
Q 012365 93 KIKDFDSAYSLLDDLKEMN--L----MPTA--SMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS----QTFSYLIH- 159 (465)
Q Consensus 93 ~~g~~~~a~~~~~~m~~~~--~----~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~- 159 (465)
..|+++++..++......- . .+.. .....+...+...|++++|...+++..+.--..+. ...+.+-.
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 5677777777766554320 0 0111 11122233445677777777777766542111111 11111111
Q ss_pred --hhCChhHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHh----c-CCC--CC-hHHHHHHHH
Q 012365 160 --NCSNEEDIIKYYEQLKS----AGGQ-ITKYVFMALINAYTTCGEFEKARQVVLDA----E-IPV--KS-RSEVKSALV 224 (465)
Q Consensus 160 --~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~-~~~--~~-~~~~~~~l~ 224 (465)
..++.+.+...++.... .|.. ....+...+...+...|+++.|...+++. . ... .+ ....+..+.
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 13344444444443332 1211 11223444555667777777777776541 1 111 11 111233445
Q ss_pred HHHHcCCChhHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHHccCcHHHHHHHHHHHcCC----CCCccchh----hHh
Q 012365 225 SALASHGRTSDAIIVYEEIKEA--GCNLE--PRAVIALIEHLNSEGELNRLIQLLEEVHDP----DYWMDGCC----RLI 292 (465)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~m~~~--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~----~~~ 292 (465)
..+...|++++|...+.+.... ...+. ...+..+.......|+.+.|...+...... +....... ...
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 5566667777777777665432 11121 223344455666777777777776665321 11100000 112
Q ss_pred hHhhhcCChhHHHHHHHHHHHcccchhHHH---HHHHHHHHHhhhcCCCCchhhhHHhHHHHHh---hcCCCCc-HHHHH
Q 012365 293 LHCVRFKQLSSATDLLKQLKDKFKDDEMAM---EYHFSEIFCQIATTDPPDVQIGLDLLQFIKD---ELGLPPS-RKCLD 365 (465)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~---~~~~~p~-~~~~~ 365 (465)
..+...|+.+.|...+.............. ...+..++.. .|+.++|...+++... ..+..++ ..+..
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~-----~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~ 735 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL-----LGQFDEAEIILEELNENARSLRLMSDLNRNLI 735 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 333456677777777655443111111110 1111111111 3677777777666543 2333332 23455
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHc
Q 012365 366 FLLGACVNARDLKRAHLIWKEYENA 390 (465)
Q Consensus 366 ~ll~~~~~~g~~~~A~~~~~~m~~~ 390 (465)
.+..++...|+.++|...+.+..+.
T Consensus 736 ~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 736 LLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5566677778888888887777765
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.34 E-value=3.6e-05 Score=63.49 Aligned_cols=129 Identities=13% Similarity=0.051 Sum_probs=83.9
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhcc
Q 012365 15 KKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKI 94 (465)
Q Consensus 15 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 94 (465)
..+-..+.-.|+-+....+....... .+.|....+...+...+.|++..|...+.+..... ++|..+|+.+--+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 33444555566666666666654432 22355555566777777777777777777776654 66777777777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 012365 95 KDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146 (465)
Q Consensus 95 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 146 (465)
|+++.|..-|.+..+.. +.+....|.+.-.+.-.|+.+.|..++......+
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 77777777776666543 3455566666667777777777777777766554
No 120
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.34 E-value=0.00035 Score=70.61 Aligned_cols=150 Identities=13% Similarity=0.092 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcC
Q 012365 99 SAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAG 178 (465)
Q Consensus 99 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 178 (465)
.|.++-..+++. |.+...|-..|......++.++|.+++++.... +.+...
T Consensus 1443 saeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REe-------------------------- 1493 (1710)
T KOG1070|consen 1443 SAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREE-------------------------- 1493 (1710)
T ss_pred CHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchh--------------------------
Confidence 444444444432 455678888899999999999999999887643 211100
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 012365 179 GQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258 (465)
Q Consensus 179 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 258 (465)
.--..+|.++++.-..-|.-+...++|++...-..+. ..|..|...|.+.+.+++|.++++.|.++-- -....|...
T Consensus 1494 -eEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~-~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y 1570 (1710)
T KOG1070|consen 1494 -EEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAY-TVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMY 1570 (1710)
T ss_pred -HHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHH
Confidence 0012345555555555566666777777633322222 2477778888888888888888888776521 356677777
Q ss_pred HHHHHccCcHHHHHHHHHHHcC
Q 012365 259 IEHLNSEGELNRLIQLLEEVHD 280 (465)
Q Consensus 259 l~~~~~~g~~~~a~~~~~~~~~ 280 (465)
+..+.+..+-+.|..++.+..+
T Consensus 1571 ~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1571 ADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred HHHHhcccHHHHHHHHHHHHHh
Confidence 7777777777777777777654
No 121
>PLN02789 farnesyltranstransferase
Probab=98.34 E-value=0.00022 Score=63.40 Aligned_cols=233 Identities=10% Similarity=0.002 Sum_probs=147.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 012365 188 ALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHG-RTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE 265 (465)
Q Consensus 188 ~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 265 (465)
.+-..+...++.++|+.+..+. ...+... .+|+.--..+...| .+++++..++++...+.+ +..+|+.--..+.+.
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP~~y-taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l 119 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNPGNY-TVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhH-HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHc
Confidence 3344455667788888888773 3344333 34666666666666 578999999988887632 334454443344445
Q ss_pred Cc--HHHHHHHHHHHcCCCCC-ccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhc-C-CCCc
Q 012365 266 GE--LNRLIQLLEEVHDPDYW-MDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIAT-T-DPPD 340 (465)
Q Consensus 266 g~--~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~-~~~~ 340 (465)
|+ .+++..+++.+.+.+.. ..++......+...|.++++++.++++.+..+.+...|+.....+... .. . ....
T Consensus 120 ~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~-~~l~~~~~~ 198 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS-PLLGGLEAM 198 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc-ccccccccc
Confidence 54 36678888777665433 445666666666778899999999999987777777776654332221 00 0 0112
Q ss_pred hhhhHHhHHHHHhhcCCCC-cHHHHHHHHHHhHhh----hhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-----
Q 012365 341 VQIGLDLLQFIKDELGLPP-SRKCLDFLLGACVNA----RDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASG----- 410 (465)
Q Consensus 341 ~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g----- 410 (465)
.++.++...++. ...| |...|+.+...+... +...+|.+.+.+..+.+ +.++..+..|++.|+...
T Consensus 199 ~e~el~y~~~aI---~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~ 274 (320)
T PLN02789 199 RDSELKYTIDAI---LANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAE 274 (320)
T ss_pred HHHHHHHHHHHH---HhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchh
Confidence 345667776666 3445 566777777777663 44567888888877753 567778999999998643
Q ss_pred -------------ChhhHHHHHhccCCCCC
Q 012365 411 -------------NRKSASKLLSKMPKDDP 427 (465)
Q Consensus 411 -------------~~~~A~~~~~~m~~~~~ 427 (465)
..++|.++++.+.+-+|
T Consensus 275 ~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 275 FRDTVDTLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred hhhhhhccccccccHHHHHHHHHHHHhhCc
Confidence 23557777776654444
No 122
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.32 E-value=0.0011 Score=60.04 Aligned_cols=124 Identities=14% Similarity=0.042 Sum_probs=94.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012365 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEH 261 (465)
Q Consensus 182 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 261 (465)
|+.......+.+.+.|+.++|.+.++......+.....+-.+..+|.+.|++.+|+.+++...... +-|+..|..|.++
T Consensus 339 N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqa 417 (484)
T COG4783 339 NPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQA 417 (484)
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHH
Confidence 445555667888999999999999988433333323346778899999999999999999988775 3478899999999
Q ss_pred HHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHH
Q 012365 262 LNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAM 322 (465)
Q Consensus 262 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 322 (465)
|...|+..++..-..+.. ...|+++.|...+....+....+...|
T Consensus 418 y~~~g~~~~a~~A~AE~~----------------~~~G~~~~A~~~l~~A~~~~~~~~~~~ 462 (484)
T COG4783 418 YAELGNRAEALLARAEGY----------------ALAGRLEQAIIFLMRASQQVKLGFPDW 462 (484)
T ss_pred HHHhCchHHHHHHHHHHH----------------HhCCCHHHHHHHHHHHHHhccCCcHHH
Confidence 999999988877665543 368899999999888887544444443
No 123
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.32 E-value=0.0038 Score=60.17 Aligned_cols=391 Identities=12% Similarity=0.084 Sum_probs=192.0
Q ss_pred HhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh----------CC---------CCCCH
Q 012365 21 SCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICH----------HN---------LKPNS 81 (465)
Q Consensus 21 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----------~~---------~~~~~ 81 (465)
|-..|.+++|+++-+.=.+-. =..||..-..-+...++.+.|++.|++... .. -..|.
T Consensus 836 yQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~ 912 (1416)
T KOG3617|consen 836 YQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDE 912 (1416)
T ss_pred HHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccch
Confidence 333455555555544322211 124666666666677788888877765321 11 02244
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHc----------C----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012365 82 ETFRSMISLNVKIKDFDSAYSLLDDLKEM----------N----------LMPTASMYNAIMAGYFRKKDVQGALMVLKE 141 (465)
Q Consensus 82 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----------~----------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 141 (465)
..|......+-..|+.+.|+.+|...++. | -.-|....-.|.+.|-..|++.+|..+|.+
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 55555556566678888888877765542 0 122444555677777777788888777776
Q ss_pred HHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCCHH-----------HHHHHHHHHHhcCCHHHHHHHHHH--
Q 012365 142 MEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKY-----------VFMALINAYTTCGEFEKARQVVLD-- 208 (465)
Q Consensus 142 m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~-- 208 (465)
.+ +|...|+.|...+--++++......+.. |.. -..-.+..|-+.|.+.+|+++--+
T Consensus 993 Aq---------afsnAIRlcKEnd~~d~L~nlal~s~~~-d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tq 1062 (1416)
T KOG3617|consen 993 AQ---------AFSNAIRLCKENDMKDRLANLALMSGGS-DLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQ 1062 (1416)
T ss_pred HH---------HHHHHHHHHHhcCHHHHHHHHHhhcCch-hHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhc
Confidence 54 3444454444433333333322222211 100 011234457778888877776311
Q ss_pred ---------hcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHH----------cC----------------CCCCHH
Q 012365 209 ---------AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE----------AG----------------CNLEPR 253 (465)
Q Consensus 209 ---------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----------~~----------------~~p~~~ 253 (465)
....+..+....+.-..-++.+.++++|..++-..++ +| -.|+..
T Consensus 1063 Qf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~ 1142 (1416)
T KOG3617|consen 1063 QFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQ 1142 (1416)
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHH
Confidence 1223333333345555566666677776665432211 11 123333
Q ss_pred ----HHHHHHHHHHccCcHHHHHHHHHHH----------cCCCCC--ccch---------hhHhhHhhhcCChhHHHHHH
Q 012365 254 ----AVIALIEHLNSEGELNRLIQLLEEV----------HDPDYW--MDGC---------CRLILHCVRFKQLSSATDLL 308 (465)
Q Consensus 254 ----~~~~ll~~~~~~g~~~~a~~~~~~~----------~~~~~~--~~~~---------~~~~~~~~~~~~~~~a~~~~ 308 (465)
....+...|.+.|.+..|-+=|.+. .+.|-. +..+ ..+..-|.+.-++..--+++
T Consensus 1143 ~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~m 1222 (1416)
T KOG3617|consen 1143 ERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTM 1222 (1416)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHH
Confidence 3445567778888877665554432 222211 1111 11222233333444333333
Q ss_pred HHHHHcccchhHHHHHHHHHHHHhhhcCC----------CCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhh---
Q 012365 309 KQLKDKFKDDEMAMEYHFSEIFCQIATTD----------PPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNAR--- 375 (465)
Q Consensus 309 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g--- 375 (465)
+.+..-... .. ..-.+..++..++..+ .|-.++|-..+.+.. +.. .....++.|-.-..+-.
T Consensus 1223 K~I~tFYTK-gq-afd~LanFY~~cAqiEiee~q~ydKa~gAl~eA~kCl~ka~-~k~--~~~t~l~~Lq~~~a~vk~~l 1297 (1416)
T KOG3617|consen 1223 KDIETFYTK-GQ-AFDHLANFYKSCAQIEIEELQTYDKAMGALEEAAKCLLKAE-QKN--MSTTGLDALQEDLAKVKVQL 1297 (1416)
T ss_pred hhhHhhhhc-ch-hHHHHHHHHHHHHHhhHHHHhhhhHHhHHHHHHHHHHHHHH-hhc--chHHHHHHHHHHHHHHHHHH
Confidence 333321000 00 0112223333333221 233444444444444 111 22223333332222221
Q ss_pred --------hhhHHHHHHHHHHHcCCCCC----hhHHHHHHHHHHhcCChhhHHHHHhccCCCCCCh
Q 012365 376 --------DLKRAHLIWKEYENAGLPYN----VLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHV 429 (465)
Q Consensus 376 --------~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 429 (465)
|......-.+.|.+...-|| ...|..||..|.+..+|..|-+.+++|.++.|.|
T Consensus 1298 ~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~ 1363 (1416)
T KOG3617|consen 1298 RKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPNV 1363 (1416)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCcc
Confidence 33333333444444322332 2478999999999999999999999999998865
No 124
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.32 E-value=1.3e-06 Score=49.26 Aligned_cols=33 Identities=33% Similarity=0.629 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 012365 118 MYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD 150 (465)
Q Consensus 118 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 150 (465)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 125
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.00014 Score=60.16 Aligned_cols=222 Identities=17% Similarity=0.122 Sum_probs=142.8
Q ss_pred HHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHH
Q 012365 191 NAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNR 270 (465)
Q Consensus 191 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 270 (465)
+-+.-.|.+..++..-....... .....-.-+-++|...|.+.....- ..... .|....+..+-......++.++
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~e---I~~~~-~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISE---IKEGK-ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHcccccccccc---ccccc-CChHHHHHHHHHHhhCcchhHH
Confidence 44556677777777665422221 2222334467788888877655532 22222 3455555555555555666555
Q ss_pred HHHHH-HHHcCCCCCcc-ch-hhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHh
Q 012365 271 LIQLL-EEVHDPDYWMD-GC-CRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDL 347 (465)
Q Consensus 271 a~~~~-~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~ 347 (465)
-..-+ +.+.......+ .+ ......|+..+++++|++....... -.....+..+. +. ..+.+.|.+.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~---lE~~Al~VqI~--lk------~~r~d~A~~~ 159 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN---LEAAALNVQIL--LK------MHRFDLAEKE 159 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch---HHHHHHHHHHH--HH------HHHHHHHHHH
Confidence 44433 34443333333 22 2233457899999999999876322 22222222221 12 2678999999
Q ss_pred HHHHHhhcCCCCcHHHHHHHHHHhHh----hhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccC
Q 012365 348 LQFIKDELGLPPSRKCLDFLLGACVN----ARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMP 423 (465)
Q Consensus 348 ~~~m~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 423 (465)
++.|. .+ .+..|.+.|..++.+ .+.+.+|.-+|++|-++ .+|++.+.+-...++...|++++|..++++.+
T Consensus 160 lk~mq---~i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL 234 (299)
T KOG3081|consen 160 LKKMQ---QI-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEAL 234 (299)
T ss_pred HHHHH---cc-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHH
Confidence 99998 32 345566666666554 46789999999999986 79999999999999999999999999999999
Q ss_pred CCCCChhHHH
Q 012365 424 KDDPHVRFVI 433 (465)
Q Consensus 424 ~~~~~~~~~l 433 (465)
.+++.++..|
T Consensus 235 ~kd~~dpetL 244 (299)
T KOG3081|consen 235 DKDAKDPETL 244 (299)
T ss_pred hccCCCHHHH
Confidence 9988754433
No 126
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.29 E-value=1.4e-06 Score=48.71 Aligned_cols=33 Identities=33% Similarity=0.569 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 012365 117 SMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP 149 (465)
Q Consensus 117 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 149 (465)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666655
No 127
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.28 E-value=0.00077 Score=63.77 Aligned_cols=219 Identities=16% Similarity=0.108 Sum_probs=164.9
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 012365 77 LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSY 156 (465)
Q Consensus 77 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 156 (465)
++|-...-..+...+...|-...|..+|+++. .|.-+|.+|...|+..+|..+..+-.+ -+||...|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHH
Confidence 34555566677788889999999999998776 477789999999999999999988877 3688888888
Q ss_pred HHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHcCCChhH
Q 012365 157 LIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSD 235 (465)
Q Consensus 157 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~ 235 (465)
+.+...+..-.++.++.-... +...-..+.....+.++++++.+.|+. +.+.+-... +|-..-.+..+.++++.
T Consensus 463 LGDv~~d~s~yEkawElsn~~----sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~-~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYI----SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLG-TWFGLGCAALQLEKEQA 537 (777)
T ss_pred hhhhccChHHHHHHHHHhhhh----hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchh-HHHhccHHHHHHhhhHH
Confidence 877766654444444433322 122222222333457899999999987 555554444 58788888889999999
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCC-ccchhhHhhHhhhcCChhHHHHHHHHHHH
Q 012365 236 AIIVYEEIKEAGCNLE-PRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW-MDGCCRLILHCVRFKQLSSATDLLKQLKD 313 (465)
Q Consensus 236 a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 313 (465)
|.+.|..-..-. || ...|+.+-.+|.+.++-.+|...+++..+.+.. +..+-..+......|.+++|++.+.++..
T Consensus 538 av~aF~rcvtL~--Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 538 AVKAFHRCVTLE--PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHhhcC--CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 999999887744 66 456999999999999999999999999887743 34455555556689999999999998876
No 128
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.27 E-value=0.00035 Score=64.20 Aligned_cols=216 Identities=12% Similarity=0.005 Sum_probs=155.4
Q ss_pred HHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHH
Q 012365 20 YSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDS 99 (465)
Q Consensus 20 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 99 (465)
-+.+.|++.+|.-.|+...+..+. +...|-.|.......++-..|+..+.+..+.. +-|....-.|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 456789999999999999887654 78899999888889999999999999999876 5578888888889999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHH-----------HHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHhh---CCh
Q 012365 100 AYSLLDDLKEMNLMPTASMYNAIM-----------AGYFRKKDVQGALMVLKEME-QANVKPDSQTFSYLIHNC---SNE 164 (465)
Q Consensus 100 a~~~~~~m~~~~~~~~~~~~~~li-----------~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~ll~~~---~~~ 164 (465)
|.+.++...... +| |..+. ..+.....+....++|-++. +.+..+|......|=-.| ...
T Consensus 372 Al~~L~~Wi~~~-p~----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 372 ALKMLDKWIRNK-PK----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHhC-cc----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 999999876542 11 11111 12233334556666776665 455334444433333333 344
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 012365 165 EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEI 243 (465)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 243 (465)
+++...|+..+... +-|..+||-|-..+....+.++|+..|.+ +...|.-.. ++..|.-+|...|.+++|.+.|-..
T Consensus 447 draiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR-~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 447 DRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVR-VRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeee-eehhhhhhhhhhhhHHHHHHHHHHH
Confidence 55555666666554 33678999999999999999999999998 444444333 3455777889999999999988765
Q ss_pred H
Q 012365 244 K 244 (465)
Q Consensus 244 ~ 244 (465)
.
T Consensus 525 L 525 (579)
T KOG1125|consen 525 L 525 (579)
T ss_pred H
Confidence 4
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.27 E-value=6e-05 Score=58.26 Aligned_cols=116 Identities=9% Similarity=0.103 Sum_probs=79.7
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 012365 33 VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNL 112 (465)
Q Consensus 33 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 112 (465)
.|+...+.... +......+...+...|++++|.+.++.+...+ +.+...+..+...+...|++++|...++.....+
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 34444443222 33445556666777788888888888877765 4567777777788888888888888888776654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 012365 113 MPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQT 153 (465)
Q Consensus 113 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 153 (465)
+.+...+..+...+...|++++|...|+...+. .|+...
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 120 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPE 120 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccch
Confidence 556677777777888888888888888777764 344443
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.26 E-value=0.0001 Score=72.27 Aligned_cols=149 Identities=11% Similarity=-0.019 Sum_probs=120.4
Q ss_pred CCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 012365 6 EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85 (465)
Q Consensus 6 ~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 85 (465)
.+..++..+-.|.....+.|++++|+.+++...+..+. +......+..++.+.+++++|....++..+.. +-+.....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHH
Confidence 35567888888999999999999999999999886332 45667778888999999999999999998876 55678888
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012365 86 SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158 (465)
Q Consensus 86 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 158 (465)
.+..++.+.|++++|..+|++....+ +-+..++..+..++...|+.++|...|+...+.. .|...-|+..+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 88889999999999999999998743 4457888899999999999999999999987642 23344444443
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.24 E-value=0.001 Score=66.34 Aligned_cols=150 Identities=16% Similarity=0.117 Sum_probs=87.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcC
Q 012365 220 KSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFK 299 (465)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (465)
+..+..+|-+.|+.++|..+|+++.+.. +-|+...+.+.-.|+.. ++++|.+++.+.... +...+
T Consensus 119 l~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-------------~i~~k 183 (906)
T PRK14720 119 LRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-------------FIKKK 183 (906)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-------------HHhhh
Confidence 4456666666666666666666666655 22455566666666666 666666666655432 23455
Q ss_pred ChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhH
Q 012365 300 QLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKR 379 (465)
Q Consensus 300 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 379 (465)
++..+.++|.++....+. +++.-.++.+.+....+..--..++-.+-..|...+++++
T Consensus 184 q~~~~~e~W~k~~~~~~~----------------------d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~ 241 (906)
T PRK14720 184 QYVGIEEIWSKLVHYNSD----------------------DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDE 241 (906)
T ss_pred cchHHHHHHHHHHhcCcc----------------------cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhH
Confidence 667777777766662222 2222222333333122333344455566666777778888
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 012365 380 AHLIWKEYENAGLPYNVLSYLWMYKAFL 407 (465)
Q Consensus 380 A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 407 (465)
+..+++.+.+.. +-|......++..|.
T Consensus 242 ~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 242 VIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 888888888763 556667777777665
No 132
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.21 E-value=3.4e-05 Score=70.18 Aligned_cols=132 Identities=14% Similarity=0.192 Sum_probs=109.8
Q ss_pred HHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 012365 33 VVEQMVQ---GELVPSTETINSILHACEESYEFNLVRRIYPMICHH--NLKPNSETFRSMISLNVKIKDFDSAYSLLDDL 107 (465)
Q Consensus 33 ~~~~m~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 107 (465)
++..|.+ ++.+.+...+..+++.+....+++.+..++-..... ....-+.|..++|+.|...|..+.+..+++.=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 4444432 445667888888899998888899999998888764 22233456679999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCCh
Q 012365 108 KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE 164 (465)
Q Consensus 108 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 164 (465)
...|+-||..++|.||..+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887777888888888776555
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=0.00059 Score=56.14 Aligned_cols=198 Identities=12% Similarity=0.067 Sum_probs=134.0
Q ss_pred CChhHHHHHHHHHHHc---C-CCCCHHH-HHHHHHHHHccCcHHHHHHHHHHHcCCCCCccch---hhHhhHhhhcCChh
Q 012365 231 GRTSDAIIVYEEIKEA---G-CNLEPRA-VIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC---CRLILHCVRFKQLS 302 (465)
Q Consensus 231 g~~~~a~~~~~~m~~~---~-~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 302 (465)
.+.++..+++.++... | ..++..+ |-.++-+....|+.+-|...++++.+.- |.+. -.-.+.+-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence 4566666666666532 3 4455554 4455666677788888888888776543 2221 11122334678889
Q ss_pred HHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHH
Q 012365 303 SATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHL 382 (465)
Q Consensus 303 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 382 (465)
+|+++++.+.+..+.+..++-.-+...-. .|..-+|++-+..-. ..+..|...|.-+...|...|++++|.-
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka------~GK~l~aIk~ln~YL--~~F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKA------QGKNLEAIKELNEYL--DKFMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHH------cCCcHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 99999998888655555554433332222 366667777666655 3566789999999999999999999999
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcC---ChhhHHHHHhccCCCCCC-hhHHHHHHHhh
Q 012365 383 IWKEYENAGLPYNVLSYLWMYKAFLASG---NRKSASKLLSKMPKDDPH-VRFVIQACKQT 439 (465)
Q Consensus 383 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~~-~~~~l~~~~~~ 439 (465)
.++++.=. -|.++..+..+...+...| +.+-|.+++.+.++.++. ..++.+-|..+
T Consensus 176 ClEE~ll~-~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 176 CLEELLLI-QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HHHHHHHc-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence 99999875 3777777788887765554 567799999999999884 35555554444
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.20 E-value=0.0023 Score=63.95 Aligned_cols=168 Identities=10% Similarity=0.020 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 012365 11 SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETIN-SILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89 (465)
Q Consensus 11 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 89 (465)
...+..|+..+...+++++|.++.+...+. .|+...+- .+...+...++.+.+.-+ .++.
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~ 91 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLID 91 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhh
Confidence 456777777777777777777777755553 33332222 222233334443332222 3334
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHH
Q 012365 90 LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK 169 (465)
Q Consensus 90 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 169 (465)
......++..+..+...|...+ -+...+..+..+|-+.|+.++|..+++++.+.. |
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~-------------------- 147 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--R-------------------- 147 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--c--------------------
Confidence 4444444544444555555432 344567777777777888888888887777643 2
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcC
Q 012365 170 YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247 (465)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 247 (465)
-|..+.|.+...|... ++++|.+++.+ .+..|...+++..+.++|.++....
T Consensus 148 -----------~n~~aLNn~AY~~ae~-dL~KA~~m~~K--------------AV~~~i~~kq~~~~~e~W~k~~~~~ 199 (906)
T PRK14720 148 -----------DNPEIVKKLATSYEEE-DKEKAITYLKK--------------AIYRFIKKKQYVGIEEIWSKLVHYN 199 (906)
T ss_pred -----------ccHHHHHHHHHHHHHh-hHHHHHHHHHH--------------HHHHHHhhhcchHHHHHHHHHHhcC
Confidence 2556666677777777 78888777653 2223555567777777777776654
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.18 E-value=9.8e-05 Score=66.93 Aligned_cols=126 Identities=14% Similarity=0.173 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 012365 12 ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLN 91 (465)
Q Consensus 12 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 91 (465)
..-..|+..+...++++.|+++|+++.+.. |+. ...+++.+...++-.+|.+++.+..+.. +.+......-...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 444556667777899999999999998875 453 4457788888888999999999988764 55777888888889
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012365 92 VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME 143 (465)
Q Consensus 92 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 143 (465)
.+.++.+.|..+.++..... |-+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999998763 3345599999999999999999999998875
No 136
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.18 E-value=0.0054 Score=56.29 Aligned_cols=404 Identities=13% Similarity=0.124 Sum_probs=208.8
Q ss_pred CCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 012365 8 TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSM 87 (465)
Q Consensus 8 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 87 (465)
+-|+.+|+.||+-+-.. .++++.+.++++... .+-....|..-+..-...++++.++.+|.+.+..- .+...|..-
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 34789999999988766 999999999999874 34466788888999889999999999999998764 467777777
Q ss_pred HHHHhcc-CCHHH----HHHHHHH-HHHcCCCC-CHHHHHHHHHHH---------HhcCCHHHHHHHHHHHHHCCCCC--
Q 012365 88 ISLNVKI-KDFDS----AYSLLDD-LKEMNLMP-TASMYNAIMAGY---------FRKKDVQGALMVLKEMEQANVKP-- 149 (465)
Q Consensus 88 i~~~~~~-g~~~~----a~~~~~~-m~~~~~~~-~~~~~~~li~~~---------~~~g~~~~a~~~~~~m~~~~~~p-- 149 (465)
|+.--+. |+... ..+.|+- +.+.|..+ +...|+..+..+ ..+.+++...++|.++....+.-
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 7643332 22222 2223332 23334322 223355444332 23345566677777776432211
Q ss_pred ----CHHHHHHHHHhh-C------Ch---hHHHHHHHHHHH--cCCCCCHH---------------HHHHHHHHHHhcC-
Q 012365 150 ----DSQTFSYLIHNC-S------NE---EDIIKYYEQLKS--AGGQITKY---------------VFMALINAYTTCG- 197 (465)
Q Consensus 150 ----~~~~~~~ll~~~-~------~~---~~~~~~~~~~~~--~~~~~~~~---------------~~~~l~~~~~~~g- 197 (465)
|-..|..-|+.. + +. -.+.++++++.. .|...... .|-.+|.-=-..+
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 111121111110 0 00 112222222221 12111110 1111221110000
Q ss_pred -----CHHH--HHHHHHH-h-cCCCCChHHH-HHH----HHHHHHcCCC-------hhHHHHHHHHHHHcCCCCCHHHHH
Q 012365 198 -----EFEK--ARQVVLD-A-EIPVKSRSEV-KSA----LVSALASHGR-------TSDAIIVYEEIKEAGCNLEPRAVI 256 (465)
Q Consensus 198 -----~~~~--a~~~~~~-~-~~~~~~~~~~-~~~----l~~~~~~~g~-------~~~a~~~~~~m~~~~~~p~~~~~~ 256 (465)
..-. ..-.+++ + -....+..-. +.. .-+.+...|+ .+++..+++.....-..-+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0000111 0 0011111000 000 0111222233 233444444433322222223332
Q ss_pred HHHHHH---HccCcHHHHHHHHHHHcCCC-CCcc-chhhHhhHhhhcCChhHHHHHHHHHHHc-ccchhHHHHHHHHHHH
Q 012365 257 ALIEHL---NSEGELNRLIQLLEEVHDPD-YWMD-GCCRLILHCVRFKQLSSATDLLKQLKDK-FKDDEMAMEYHFSEIF 330 (465)
Q Consensus 257 ~ll~~~---~~~g~~~~a~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 330 (465)
.+..-= .+..+.+....+++.+.... ..++ .|...+.+-.+......|..+|.+.++. ..+..+...+.+.+++
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 222111 11112445555555554322 2233 3455666666778888889999888883 3332333333444445
Q ss_pred HhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHh
Q 012365 331 CQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNV--LSYLWMYKAFLA 408 (465)
Q Consensus 331 ~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~ 408 (465)
+. ++.+.|.++|+--....| -++..-...+.-+...++-..|+.+|+.....+++|+. ..|..++.-=..
T Consensus 413 cs------kD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~ 484 (656)
T KOG1914|consen 413 CS------KDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESN 484 (656)
T ss_pred hc------CChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHh
Confidence 54 888889999887651222 23333356667777888888899999999887666655 488888887778
Q ss_pred cCChhhHHHHHhccC
Q 012365 409 SGNRKSASKLLSKMP 423 (465)
Q Consensus 409 ~g~~~~A~~~~~~m~ 423 (465)
-|+...+.++-+++.
T Consensus 485 vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 485 VGDLNSILKLEKRRF 499 (656)
T ss_pred cccHHHHHHHHHHHH
Confidence 888888888777654
No 137
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.15 E-value=4.5e-05 Score=54.16 Aligned_cols=76 Identities=16% Similarity=0.454 Sum_probs=39.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012365 53 LHACEESYEFNLVRRIYPMICHHNL-KPNSETFRSMISLNVKIK--------DFDSAYSLLDDLKEMNLMPTASMYNAIM 123 (465)
Q Consensus 53 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~~~~~~~~~li 123 (465)
|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...++.|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444555555555555555555 455555555555444331 1234455556666556666666666666
Q ss_pred HHHHh
Q 012365 124 AGYFR 128 (465)
Q Consensus 124 ~~~~~ 128 (465)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 55443
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.13 E-value=0.00014 Score=56.17 Aligned_cols=110 Identities=11% Similarity=0.095 Sum_probs=90.8
Q ss_pred CCCC-HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 012365 7 ITPS-SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85 (465)
Q Consensus 7 ~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 85 (465)
..|+ ......+...+.+.|++++|.+.|+.....+. .+...+..+..++...|+++.|..+++...+.+ +.+...+.
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~ 89 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYF 89 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHH
Confidence 4454 35566677888899999999999999988653 377888888899999999999999999988876 56788888
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 012365 86 SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120 (465)
Q Consensus 86 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 120 (465)
.+...+...|+++.|...|+...+.. |+...+.
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~ 122 (135)
T TIGR02552 90 HAAECLLALGEPESALKALDLAIEIC--GENPEYS 122 (135)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhc--cccchHH
Confidence 88999999999999999999988763 5554443
No 139
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.11 E-value=0.0052 Score=60.51 Aligned_cols=357 Identities=11% Similarity=0.006 Sum_probs=204.2
Q ss_pred CHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012365 61 EFNLVRRIYPMICHHNLKPN-SETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVL 139 (465)
Q Consensus 61 ~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 139 (465)
+...+...|=+..+. .++ ...|..|...|....+...|.+.|++.-+.+ .-+...+......|+...+++.|..+.
T Consensus 473 ~~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 473 NSALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 455566555554444 333 5688999999998889999999999988765 457788999999999999999999983
Q ss_pred HHHHHCCCCCCHHHHHHHHHh--hCChhHHHHHHHHHHH-cCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCC
Q 012365 140 KEMEQANVKPDSQTFSYLIHN--CSNEEDIIKYYEQLKS-AGG-QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKS 215 (465)
Q Consensus 140 ~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 215 (465)
-..-+. -+.-...++..-.+ +-+.++..+....++. ..+ +-|...|..+..+|..+|++..|.++|.+...-.+.
T Consensus 550 l~~~qk-a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 550 LRAAQK-APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred HHHhhh-chHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 322221 11122333333333 3334444444444433 122 336788999999999999999999999863322222
Q ss_pred hHHHHHH--HHHHHHcCCChhHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHc-------C
Q 012365 216 RSEVKSA--LVSALASHGRTSDAIIVYEEIKEAG------CNLEPRAVIALIEHLNSEGELNRLIQLLEEVH-------D 280 (465)
Q Consensus 216 ~~~~~~~--l~~~~~~~g~~~~a~~~~~~m~~~~------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~ 280 (465)
. +|.. .....+..|.+.+|...+....... ..--..++..+...+...|-..++..+++.-. .
T Consensus 629 s--~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 629 S--KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred h--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 2 2332 2234567789999998887765431 11112233333333333333333333333221 1
Q ss_pred CCCC--------------------cc----chhhHhhH-hhhcCCh---h---HHHHHHHHHHHcccchhHHHHHHHHHH
Q 012365 281 PDYW--------------------MD----GCCRLILH-CVRFKQL---S---SATDLLKQLKDKFKDDEMAMEYHFSEI 329 (465)
Q Consensus 281 ~~~~--------------------~~----~~~~~~~~-~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~ 329 (465)
.... |+ .+..++.. ....+.. + -+.+.+-.-. +......+|+.+...+
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl-sl~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL-SLAIHMYPWYNLGINY 785 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH-HHhhccchHHHHhHHH
Confidence 1100 00 01111111 1111111 1 0111111111 1222356677776666
Q ss_pred HHhhhcC-CC-CchhhhHHhHHHHHhhcCCC-CcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 012365 330 FCQIATT-DP-PDVQIGLDLLQFIKDELGLP-PSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAF 406 (465)
Q Consensus 330 ~~~~~~~-~~-~~~~~A~~~~~~m~~~~~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 406 (465)
+...... +. .+...|+..+.+.. ... .+..+|+.|.-. ...|++.-|...|-+-... .|-...+|..+.-.+
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV---~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~ 860 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAV---SLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLV 860 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHH---HHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeE
Confidence 6633222 22 23346777777766 233 345566665443 6667888887777766655 366677888888888
Q ss_pred HhcCChhhHHHHHhccCCCCCCh
Q 012365 407 LASGNRKSASKLLSKMPKDDPHV 429 (465)
Q Consensus 407 ~~~g~~~~A~~~~~~m~~~~~~~ 429 (465)
.+..+++-|...|......+|.+
T Consensus 861 l~n~d~E~A~~af~~~qSLdP~n 883 (1238)
T KOG1127|consen 861 LENQDFEHAEPAFSSVQSLDPLN 883 (1238)
T ss_pred EecccHHHhhHHHHhhhhcCchh
Confidence 89999999999999988888743
No 140
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.11 E-value=5.2e-05 Score=68.96 Aligned_cols=124 Identities=10% Similarity=0.075 Sum_probs=105.8
Q ss_pred CCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 012365 6 EITPSSASYKKLITYSCDLLKVHVALDVVEQMVQG--ELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSET 83 (465)
Q Consensus 6 ~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 83 (465)
+.+.+......++..+....+++.+..++.+.+.. ....-..|.+++++.|...|..+.+..++..=...|+=||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34557778888999999999999999999999875 2222345667999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 012365 84 FRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129 (465)
Q Consensus 84 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 129 (465)
+|.||+.+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999998777777777777777666555
No 141
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.11 E-value=6.3e-05 Score=53.45 Aligned_cols=75 Identities=19% Similarity=0.317 Sum_probs=40.3
Q ss_pred HHHHhcccCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 012365 18 ITYSCDLLKVHVALDVVEQMVQGEL-VPSTETINSILHACEESY--------EFNLVRRIYPMICHHNLKPNSETFRSMI 88 (465)
Q Consensus 18 i~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~li 88 (465)
|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3444444555555556665555555 555556665555544431 2334455555555555556666665555
Q ss_pred HHHh
Q 012365 89 SLNV 92 (465)
Q Consensus 89 ~~~~ 92 (465)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5443
No 142
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.10 E-value=0.00099 Score=65.56 Aligned_cols=132 Identities=8% Similarity=-0.028 Sum_probs=89.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 012365 42 LVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA 121 (465)
Q Consensus 42 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 121 (465)
...+...+..|..+..+.|++++|..+++...+.. +-+......+...+.+.+++++|...+++..+.+ +-+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 34456777777777778888888888888877764 3345666777777888888888888888877764 445566667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H---HHHHHHHHhhCChhHHHHHHHHHHHc
Q 012365 122 IMAGYFRKKDVQGALMVLKEMEQANVKPD-S---QTFSYLIHNCSNEEDIIKYYEQLKSA 177 (465)
Q Consensus 122 li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~---~~~~~ll~~~~~~~~~~~~~~~~~~~ 177 (465)
+..++.+.|++++|..+|++....+ |+ . ..+..++...++.+++...|+...+.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777788888888888888887632 22 2 23444444455555555555555543
No 143
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.09 E-value=9.9e-05 Score=59.44 Aligned_cols=75 Identities=20% Similarity=0.368 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012365 95 KDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR----------------KKDVQGALMVLKEMEQANVKPDSQTFSYLI 158 (465)
Q Consensus 95 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----------------~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 158 (465)
|..+=....+..|.+.|+..|..+|+.|++.+=+ -.+-+-|++++++|...|+.||..|+..++
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3344444444444444444444444444444332 123466888888888888888888888888
Q ss_pred HhhCChhHHHH
Q 012365 159 HNCSNEEDIIK 169 (465)
Q Consensus 159 ~~~~~~~~~~~ 169 (465)
..+++.+....
T Consensus 146 ~iFG~~s~p~~ 156 (228)
T PF06239_consen 146 NIFGRKSHPMK 156 (228)
T ss_pred HHhccccHHHH
Confidence 88888766544
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.08 E-value=0.00037 Score=54.50 Aligned_cols=128 Identities=13% Similarity=0.077 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH--HHHH
Q 012365 11 SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPST---ETINSILHACEESYEFNLVRRIYPMICHHNLKPNS--ETFR 85 (465)
Q Consensus 11 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 85 (465)
...|..++..+. .++...+.+.++.+.+.... +. ...-.+...+...|++++|...|+.+......|+. ...-
T Consensus 12 ~~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 12 SALYEQALQALQ-AGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 456777888774 89999999999999886433 32 22333446688899999999999999987622322 2444
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012365 86 SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM 142 (465)
Q Consensus 86 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 142 (465)
.|...+...|++++|...++..... ......+......+.+.|++++|...|+..
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 5678888999999999999775443 345566778889999999999999999863
No 145
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.07 E-value=4.4e-06 Score=45.47 Aligned_cols=30 Identities=27% Similarity=0.515 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHhCCC
Q 012365 13 SYKKLITYSCDLLKVHVALDVVEQMVQGEL 42 (465)
Q Consensus 13 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~ 42 (465)
+||.+|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 688888888888888888888888887764
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.04 E-value=0.00025 Score=55.44 Aligned_cols=125 Identities=15% Similarity=0.109 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChH---HHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCH--HHHHHHH
Q 012365 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRS---EVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP--RAVIALI 259 (465)
Q Consensus 185 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~ll 259 (465)
.|..++..+ ..++...+...++.+....+.+. ...-.+...+...|++++|...|+........|+. .....+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 444455544 46777777777766433333331 12344567778888888888888888887622221 2333456
Q ss_pred HHHHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHH
Q 012365 260 EHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQ 310 (465)
Q Consensus 260 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 310 (465)
..+...|++++|+..++........+.........+.+.|++++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777888888888888877655455455555666677778888888777765
No 147
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.99 E-value=0.00081 Score=60.72 Aligned_cols=124 Identities=17% Similarity=0.061 Sum_probs=92.2
Q ss_pred hhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCc-HHHHHHHHHHhHhh
Q 012365 296 VRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS-RKCLDFLLGACVNA 374 (465)
Q Consensus 296 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~ 374 (465)
...+++++|+..++.+.... |++..+..+....+.. .++..+|.+.++++. ...|+ ....-.+..++.+.
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~-----~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLE-----ANKAKEAIERLKKAL---ALDPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHH-----cCChHHHHHHHHHHH---hcCCCccHHHHHHHHHHHhc
Confidence 37888999999999877743 4444444444443333 488999999999988 55666 45556677888899
Q ss_pred hhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCCh
Q 012365 375 RDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHV 429 (465)
Q Consensus 375 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 429 (465)
|++.+|..+++..... .|.|+..|..|..+|...|+..+|..-.-+.....-.|
T Consensus 388 g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~ 441 (484)
T COG4783 388 GKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRL 441 (484)
T ss_pred CChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCH
Confidence 9999999999888876 58888899999999988888887777666665544444
No 148
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.99 E-value=0.0003 Score=63.86 Aligned_cols=84 Identities=14% Similarity=0.131 Sum_probs=62.0
Q ss_pred CchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHH
Q 012365 339 PDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKL 418 (465)
Q Consensus 339 ~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 418 (465)
++-.+|.+++++.. + ..+-+...+..-...|.+.++++.|+.+.+++.+. .|.+..+|..|..+|...|++++|+..
T Consensus 214 ~~E~~AI~ll~~aL-~-~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALla 290 (395)
T PF09295_consen 214 NEEVEAIRLLNEAL-K-ENPQDSELLNLQAEFLLSKKKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLA 290 (395)
T ss_pred CcHHHHHHHHHHHH-H-hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 44455666665555 1 12224555555566678889999999999999987 366666999999999999999999999
Q ss_pred HhccCCC
Q 012365 419 LSKMPKD 425 (465)
Q Consensus 419 ~~~m~~~ 425 (465)
++.++..
T Consensus 291 LNs~Pm~ 297 (395)
T PF09295_consen 291 LNSCPML 297 (395)
T ss_pred HhcCcCC
Confidence 9988754
No 149
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.99 E-value=0.0031 Score=61.23 Aligned_cols=64 Identities=6% Similarity=-0.106 Sum_probs=36.6
Q ss_pred HhHhhhhhhHHHHHH-HHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCC-hhHHH
Q 012365 370 ACVNARDLKRAHLIW-KEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPH-VRFVI 433 (465)
Q Consensus 370 ~~~~~g~~~~A~~~~-~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~l 433 (465)
.+...|++++|..++ ....+.-.+-+...-+--+..+...++|.+-.++..+++..+.+ |....
T Consensus 199 iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~ 264 (932)
T KOG2053|consen 199 ILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYT 264 (932)
T ss_pred HHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHH
Confidence 345667777777777 33333322333333344455666777777777777776666665 44433
No 150
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.98 E-value=9.4e-06 Score=44.15 Aligned_cols=29 Identities=31% Similarity=0.625 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 012365 118 MYNAIMAGYFRKKDVQGALMVLKEMEQAN 146 (465)
Q Consensus 118 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 146 (465)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45556666666666666666666655544
No 151
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.92 E-value=3e-05 Score=54.10 Aligned_cols=82 Identities=15% Similarity=0.102 Sum_probs=60.5
Q ss_pred CCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHH
Q 012365 338 PPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASK 417 (465)
Q Consensus 338 ~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 417 (465)
.|+++.|+.+++++.......|+...+-.+..++.+.|++++|..+++. .+.+ +.+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4788888888888882223233555666689999999999999999999 4332 2344555566889999999999999
Q ss_pred HHhc
Q 012365 418 LLSK 421 (465)
Q Consensus 418 ~~~~ 421 (465)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9876
No 152
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.00077 Score=55.50 Aligned_cols=165 Identities=13% Similarity=0.097 Sum_probs=118.5
Q ss_pred CcHHHHHHHHHHHcC---CC-CCccch---hhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCC
Q 012365 266 GELNRLIQLLEEVHD---PD-YWMDGC---CRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDP 338 (465)
Q Consensus 266 g~~~~a~~~~~~~~~---~~-~~~~~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 338 (465)
.+.++..+++.++.. .+ ..++.+ -.++.+....++.+.|...++.+.... |.+.....+-.-.+.. .
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa-----~ 99 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEA-----T 99 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHH-----h
Confidence 344555555555432 12 223322 344555568899999999999998865 4333333332223333 4
Q ss_pred CchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHH
Q 012365 339 PDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKL 418 (465)
Q Consensus 339 ~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 418 (465)
|++++|+++++... ... +.|..++.--+...-.+|+-.+|.+-+.+..+. +..|...|..+...|...|++++|.-.
T Consensus 100 ~~~~~A~e~y~~lL-~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 100 GNYKEAIEYYESLL-EDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hchhhHHHHHHHHh-ccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 99999999999999 333 346677776666677788888999999998887 899999999999999999999999999
Q ss_pred HhccCCCCCChhHHHHHHHhh
Q 012365 419 LSKMPKDDPHVRFVIQACKQT 439 (465)
Q Consensus 419 ~~~m~~~~~~~~~~l~~~~~~ 439 (465)
++++.-.+|..+..-..++..
T Consensus 177 lEE~ll~~P~n~l~f~rlae~ 197 (289)
T KOG3060|consen 177 LEELLLIQPFNPLYFQRLAEV 197 (289)
T ss_pred HHHHHHcCCCcHHHHHHHHHH
Confidence 999999999766555554443
No 153
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.89 E-value=0.017 Score=51.99 Aligned_cols=410 Identities=15% Similarity=0.115 Sum_probs=213.2
Q ss_pred HHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHhhC--CCCC------------
Q 012365 16 KLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA--CEESYEFNLVRRIYPMICHH--NLKP------------ 79 (465)
Q Consensus 16 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~--~~~~------------ 79 (465)
.+|.+|.. .+.+.....+..+.+.. | ...|-.+..+ +-+.+.+++|.+.+..-... +..|
T Consensus 51 rilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~ 126 (549)
T PF07079_consen 51 RILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFS 126 (549)
T ss_pred HHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhh
Confidence 34444442 33444544444444321 1 1233344444 23566777777776655443 2111
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcC--------C-------HHHHHHHHH
Q 012365 80 NSETFRSMISLNVKIKDFDSAYSLLDDLKEMNL----MPTASMYNAIMAGYFRKK--------D-------VQGALMVLK 140 (465)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~~~~~~~~~li~~~~~~g--------~-------~~~a~~~~~ 140 (465)
|...=+..++++...|++.++..+++++...=+ .-+..+|+.++-.+.++= . ++-+.-..+
T Consensus 127 df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~k 206 (549)
T PF07079_consen 127 DFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLK 206 (549)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHH
Confidence 222234566677777888888777777654322 256677776554444321 1 122222233
Q ss_pred HHHHC------CCCCCHHHHHHHHHhh-C----ChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 012365 141 EMEQA------NVKPDSQTFSYLIHNC-S----NEEDIIKYYEQLKSAGGQITKY-VFMALINAYTTCGEFEKARQVVLD 208 (465)
Q Consensus 141 ~m~~~------~~~p~~~~~~~ll~~~-~----~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~ 208 (465)
+|... .+.|....+..++... . +..-..++++.....-+.|+-. +...++..+.+ +.+++..+-+.
T Consensus 207 ki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ 284 (549)
T PF07079_consen 207 KIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEA 284 (549)
T ss_pred HHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHH
Confidence 33211 2344444444444431 1 1112233444444444455432 33344444443 33333333222
Q ss_pred -----hcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHH----ccCcHHHHH
Q 012365 209 -----AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI-------ALIEHLN----SEGELNRLI 272 (465)
Q Consensus 209 -----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-------~ll~~~~----~~g~~~~a~ 272 (465)
...-......++..++...++.++...|...+.-+.--. |+...-. .+.+..+ ..-+...-+
T Consensus 285 ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL 362 (549)
T PF07079_consen 285 IASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYL 362 (549)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHH
Confidence 111112223357888888888888888888888776543 3333211 1122222 112334445
Q ss_pred HHHHHHcCCCCCccch----hhHhhHhhhcCC-hhHHHHHHHHHHHcccchhHHHHHHH---HHHHHhhhcCCCCchhhh
Q 012365 273 QLLEEVHDPDYWMDGC----CRLILHCVRFKQ-LSSATDLLKQLKDKFKDDEMAMEYHF---SEIFCQIATTDPPDVQIG 344 (465)
Q Consensus 273 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~A 344 (465)
.+|+.+...+++..-. .....-+-+.|. -+.|+++++.+..-..-+...-+.++ ...+...-. ...+.+-
T Consensus 363 ~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs--~~~~~rL 440 (549)
T PF07079_consen 363 NLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALS--MHAIPRL 440 (549)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh--hhhHHHH
Confidence 6666666555442211 122223335555 78889999888874333333333222 222222110 1223333
Q ss_pred HHhHHHHHhhcCCCCc----HHHHHHHHHH--hHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHH
Q 012365 345 LDLLQFIKDELGLPPS----RKCLDFLLGA--CVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKL 418 (465)
Q Consensus 345 ~~~~~~m~~~~~~~p~----~~~~~~ll~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 418 (465)
+.+-+-+. +.|+.|- ...-|.|.+| +...|++.++.-.-..+.+ +.|++.+|.-+.-.+....++++|..+
T Consensus 441 lkLe~fi~-e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~ 517 (549)
T PF07079_consen 441 LKLEDFIT-EVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEY 517 (549)
T ss_pred HHHHHHHH-hcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33333334 6788773 3455666665 4578999999877777666 689999999999999999999999999
Q ss_pred HhccCCCCCChh----HHHHHHHh
Q 012365 419 LSKMPKDDPHVR----FVIQACKQ 438 (465)
Q Consensus 419 ~~~m~~~~~~~~----~~l~~~~~ 438 (465)
+.+++..+-.++ -.+.-|.+
T Consensus 518 l~~LP~n~~~~dskvqKAl~lCqK 541 (549)
T PF07079_consen 518 LQKLPPNERMRDSKVQKALALCQK 541 (549)
T ss_pred HHhCCCchhhHHHHHHHHHHHHHH
Confidence 999998555443 34444544
No 154
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.86 E-value=0.034 Score=54.48 Aligned_cols=223 Identities=12% Similarity=0.104 Sum_probs=153.4
Q ss_pred HhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHH
Q 012365 21 SCDLLKVHVALDVVEQMVQGELVPSTETINSILHAC--EESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFD 98 (465)
Q Consensus 21 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 98 (465)
....+++..|++....+.+. .|+. .|..+++++ .+.|+.++|..+++.....+. .|..|...+-.+|-..++.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhh
Confidence 34578899999999998775 3444 455566664 578999999999998877663 38899999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCC-------------hh
Q 012365 99 SAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN-------------EE 165 (465)
Q Consensus 99 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-------------~~ 165 (465)
+|..+|++.... -|+......+..+|++.+.+.+-.+.--+|-+ ..+-+.++|-.+++...+ ..
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 999999999876 47888888888899998887765554444433 233445555555554211 12
Q ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--hcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHH
Q 012365 166 DIIKYYEQLKSAG-GQITKYVFMALINAYTTCGEFEKARQVVLD--AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242 (465)
Q Consensus 166 ~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 242 (465)
-+++..+.+.+.+ -.-+..-.......+...|++++|.+++.. .......+...-+.-+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 2344555555443 222333333445667788999999999954 2222222222234556777788899999999999
Q ss_pred HHHcCCCCCH
Q 012365 243 IKEAGCNLEP 252 (465)
Q Consensus 243 m~~~~~~p~~ 252 (465)
+..+| +|.
T Consensus 252 Ll~k~--~Dd 259 (932)
T KOG2053|consen 252 LLEKG--NDD 259 (932)
T ss_pred HHHhC--Ccc
Confidence 98888 553
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.81 E-value=0.00053 Score=48.78 Aligned_cols=91 Identities=11% Similarity=0.094 Sum_probs=41.7
Q ss_pred HHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccC
Q 012365 16 KLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIK 95 (465)
Q Consensus 16 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 95 (465)
.+...+...|++++|...++...+... .+...+..+...+...+++++|.+.++...+.. +.+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 344444455555555555555544321 122334444444444455555555555544433 223334444444444445
Q ss_pred CHHHHHHHHHHHH
Q 012365 96 DFDSAYSLLDDLK 108 (465)
Q Consensus 96 ~~~~a~~~~~~m~ 108 (465)
+++.|...+....
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 5555554444443
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.81 E-value=0.0011 Score=49.79 Aligned_cols=97 Identities=6% Similarity=-0.020 Sum_probs=46.5
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHH
Q 012365 14 YKKLITYSCDLLKVHVALDVVEQMVQGELV--PSTETINSILHACEESYEFNLVRRIYPMICHHNL--KPNSETFRSMIS 89 (465)
Q Consensus 14 y~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~ 89 (465)
+-.+...+.+.|++++|.+.|+.+.+.... .....+..+..++...|+++.|...++.+....- +....++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344445555555555565555555443211 0122333445555555555555555555544320 111334444445
Q ss_pred HHhccCCHHHHHHHHHHHHHc
Q 012365 90 LNVKIKDFDSAYSLLDDLKEM 110 (465)
Q Consensus 90 ~~~~~g~~~~a~~~~~~m~~~ 110 (465)
++.+.|+.++|...++++...
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555555544
No 157
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.79 E-value=0.00086 Score=58.82 Aligned_cols=144 Identities=10% Similarity=0.133 Sum_probs=107.3
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 012365 12 ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA-CEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL 90 (465)
Q Consensus 12 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 90 (465)
.+|-.++...-+.+..+.|..+|.+.++.+. .+...|...... +...++.+.|.++|+...+. ++.+...|..-++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 5789999999999999999999999986532 234444444333 33357888899999999876 46788999999999
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 012365 91 NVKIKDFDSAYSLLDDLKEMNLMPTA---SMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160 (465)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 160 (465)
+...++.+.|..+|++.... ++++. ..|...+..=.+.|+++.+.++.+++.+. .|+......++.-
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~r 149 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDR 149 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCC
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHH
Confidence 99999999999999998865 33322 48999999999999999999999998874 4444444444443
No 158
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.77 E-value=0.00058 Score=55.14 Aligned_cols=89 Identities=11% Similarity=0.216 Sum_probs=75.1
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhcc----------------CCHHHHH
Q 012365 43 VPSTETINSILHACEES-----YEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKI----------------KDFDSAY 101 (465)
Q Consensus 43 ~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------g~~~~a~ 101 (465)
..|..+|..++..+.+. |.++-....+..|.+.|+.-|..+|+.||+.+=+. .+.+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 34788888888887644 77888888899999999999999999999987542 2346799
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 012365 102 SLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131 (465)
Q Consensus 102 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 131 (465)
+++++|...|+-||..++..+++.+.+.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 999999999999999999999999976654
No 159
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.76 E-value=0.00068 Score=48.21 Aligned_cols=95 Identities=11% Similarity=0.183 Sum_probs=80.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 012365 49 INSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128 (465)
Q Consensus 49 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 128 (465)
+..+...+...|++++|...++...+.. +.+...+..+...+...+++++|.+.|+...... +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4556777888999999999999998765 4456788888899999999999999999988765 4556788899999999
Q ss_pred cCCHHHHHHHHHHHHHC
Q 012365 129 KKDVQGALMVLKEMEQA 145 (465)
Q Consensus 129 ~g~~~~a~~~~~~m~~~ 145 (465)
.|++++|...+....+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 99999999999887653
No 160
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.72 E-value=8e-05 Score=49.64 Aligned_cols=67 Identities=19% Similarity=0.168 Sum_probs=59.2
Q ss_pred cHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-ChhhHHHHHhccCCCCC
Q 012365 360 SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASG-NRKSASKLLSKMPKDDP 427 (465)
Q Consensus 360 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~ 427 (465)
++.+|..+...+...|++++|...|++..+.. |.++..|..+..+|.+.| ++++|++.+++.++.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45678888899999999999999999999984 778889999999999999 79999999998876554
No 161
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.71 E-value=0.00026 Score=59.78 Aligned_cols=98 Identities=18% Similarity=0.053 Sum_probs=82.1
Q ss_pred CCchhhhHHhHHHHHhhcCCCC-cHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHH
Q 012365 338 PPDVQIGLDLLQFIKDELGLPP-SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSAS 416 (465)
Q Consensus 338 ~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 416 (465)
.+++++|+..|.+.. .+.| |++.|..=..+|++.|.++.|.+-.+..++.+ |--..+|..|..+|...|++++|.
T Consensus 94 ~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred hhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHH
Confidence 389999999999998 7777 55666777889999999999999999888853 445569999999999999999999
Q ss_pred HHHhccCCCCCChhHHHHHHHhh
Q 012365 417 KLLSKMPKDDPHVRFVIQACKQT 439 (465)
Q Consensus 417 ~~~~~m~~~~~~~~~~l~~~~~~ 439 (465)
+.|++.++.+|.+.++-.....+
T Consensus 170 ~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 170 EAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHhhhccCCCcHHHHHHHHHH
Confidence 99999999999876555444444
No 162
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.69 E-value=0.00022 Score=47.30 Aligned_cols=57 Identities=23% Similarity=0.324 Sum_probs=49.1
Q ss_pred HhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCCh
Q 012365 372 VNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHV 429 (465)
Q Consensus 372 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 429 (465)
...|++++|.++|+++.+. .|.+...+..++.+|.+.|++++|.++++++...+|..
T Consensus 2 l~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR-NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH-TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hhccCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 4679999999999999887 47788888899999999999999999999999888764
No 163
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.59 E-value=0.0033 Score=47.11 Aligned_cols=99 Identities=5% Similarity=-0.071 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CCCCHHHHHHH
Q 012365 47 ETINSILHACEESYEFNLVRRIYPMICHHNL--KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMN--LMPTASMYNAI 122 (465)
Q Consensus 47 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~l 122 (465)
.++-.+...+.+.|++++|.+.++.+.+..- +.....+..+..++.+.|+++.|...|+.+.... .+....++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3556677788899999999999999987531 1124567778899999999999999999988653 11125668888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 012365 123 MAGYFRKKDVQGALMVLKEMEQA 145 (465)
Q Consensus 123 i~~~~~~g~~~~a~~~~~~m~~~ 145 (465)
..++.+.|+.++|.+.++++.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 88999999999999999999876
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.59 E-value=0.0041 Score=50.25 Aligned_cols=96 Identities=17% Similarity=0.109 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012365 48 TINSILHACEESYEFNLVRRIYPMICHHNLKPN--SETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125 (465)
Q Consensus 48 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 125 (465)
.+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++..+.. +.+...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344444555555566666655555554321111 2345555555555566666666555555432 2234444444455
Q ss_pred HHhcCC--------------HHHHHHHHHHHHH
Q 012365 126 YFRKKD--------------VQGALMVLKEMEQ 144 (465)
Q Consensus 126 ~~~~g~--------------~~~a~~~~~~m~~ 144 (465)
+...|+ +++|.+++++...
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 555444 4667777776654
No 165
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.58 E-value=0.00014 Score=47.74 Aligned_cols=61 Identities=16% Similarity=0.187 Sum_probs=49.4
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCC
Q 012365 367 LLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPH 428 (465)
Q Consensus 367 ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 428 (465)
+...+...|++++|...|+++.+.. |-+...+..+..++...|++++|..+|+++.+.+|.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3456778899999999999999874 667778888999999999999999999988776654
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.58 E-value=0.0021 Score=58.61 Aligned_cols=90 Identities=10% Similarity=0.020 Sum_probs=57.2
Q ss_pred HHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHH
Q 012365 19 TYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFD 98 (465)
Q Consensus 19 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 98 (465)
..+...|+++.|++.|++..+.... +...|..+..++...|++++|...++.+.+.. +.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 3444566777777777776665432 45566666666666677777777777666654 345566666666666677777
Q ss_pred HHHHHHHHHHHc
Q 012365 99 SAYSLLDDLKEM 110 (465)
Q Consensus 99 ~a~~~~~~m~~~ 110 (465)
+|...|++....
T Consensus 88 eA~~~~~~al~l 99 (356)
T PLN03088 88 TAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHh
Confidence 777777666654
No 167
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.55 E-value=0.0068 Score=53.43 Aligned_cols=174 Identities=18% Similarity=0.177 Sum_probs=92.9
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHcCC--C-CC--HHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCccchhhHhhHh
Q 012365 221 SALVSALASHGRTSDAIIVYEEIKEAGC--N-LE--PRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHC 295 (465)
Q Consensus 221 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~-p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 295 (465)
......|-..|++++|.+.|.+..+... . +. ...|......|.+ +++++|...+++.. ..|
T Consensus 39 ~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~-------------~~y 104 (282)
T PF14938_consen 39 EKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAI-------------EIY 104 (282)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHH-------------HHH
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHH-------------HHH
Confidence 3344555566666666666655432210 0 00 1122233333322 25555555554443 234
Q ss_pred hhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCC-CchhhhHHhHHHHHhh---cCCCCc--HHHHHHHHH
Q 012365 296 VRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDP-PDVQIGLDLLQFIKDE---LGLPPS--RKCLDFLLG 369 (465)
Q Consensus 296 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~A~~~~~~m~~~---~~~~p~--~~~~~~ll~ 369 (465)
...|++..|-+.+.++.+ + .... |++++|++.|++..+- .+ .+. ..++..+..
T Consensus 105 ~~~G~~~~aA~~~~~lA~---------------~-----ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 105 REAGRFSQAAKCLKELAE---------------I-----YEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAAD 163 (282)
T ss_dssp HHCT-HHHHHHHHHHHHH---------------H-----HCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHH---------------H-----HHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHH
Confidence 456666666666655544 1 1113 5666666666665521 12 221 235566777
Q ss_pred HhHhhhhhhHHHHHHHHHHHcCCCC-----Chh-HHHHHHHHHHhcCChhhHHHHHhccCCCCCCh
Q 012365 370 ACVNARDLKRAHLIWKEYENAGLPY-----NVL-SYLWMYKAFLASGNRKSASKLLSKMPKDDPHV 429 (465)
Q Consensus 370 ~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 429 (465)
.+.+.|++++|.++|+++...-... +.. .+...+-++...||...|.+.+++....+|.+
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 8889999999999999988653222 222 23334446677899999999999998887754
No 168
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.54 E-value=0.0042 Score=59.26 Aligned_cols=72 Identities=13% Similarity=0.075 Sum_probs=61.4
Q ss_pred CCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCChhH
Q 012365 358 PPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRF 431 (465)
Q Consensus 358 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 431 (465)
..++..|..+.-.....|++++|...+++..+. .|+...|..+...+...|+.++|.+.+++....+|.+++
T Consensus 417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 345567777765566679999999999999996 478899999999999999999999999999998887654
No 169
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.54 E-value=0.00016 Score=50.42 Aligned_cols=80 Identities=9% Similarity=0.148 Sum_probs=35.9
Q ss_pred ccCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 012365 24 LLKVHVALDVVEQMVQGELV-PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYS 102 (465)
Q Consensus 24 ~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 102 (465)
.|+++.|+.+|+++.+.... |+...+..+..++.+.|++++|..+++. .+.+ +.+....-.+..++.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35555555555555543321 1223333345555555555555555555 2221 1122333333455555555555555
Q ss_pred HHH
Q 012365 103 LLD 105 (465)
Q Consensus 103 ~~~ 105 (465)
+|+
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 170
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.54 E-value=0.0032 Score=57.36 Aligned_cols=103 Identities=18% Similarity=0.241 Sum_probs=86.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 012365 53 LHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132 (465)
Q Consensus 53 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 132 (465)
...+...|+++.|.+.|+++++.. +.+...|..+..+|.+.|++++|...+++..... +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 345667899999999999999876 5678899999999999999999999999998875 55778899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012365 133 QGALMVLKEMEQANVKPDSQTFSYLIH 159 (465)
Q Consensus 133 ~~a~~~~~~m~~~~~~p~~~~~~~ll~ 159 (465)
++|...|++..+. .|+.......+.
T Consensus 87 ~eA~~~~~~al~l--~P~~~~~~~~l~ 111 (356)
T PLN03088 87 QTAKAALEKGASL--APGDSRFTKLIK 111 (356)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 9999999999874 465555444443
No 171
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.52 E-value=0.0035 Score=50.44 Aligned_cols=96 Identities=11% Similarity=-0.013 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012365 46 TETINSILHACEESYEFNLVRRIYPMICHHNLKP--NSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123 (465)
Q Consensus 46 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 123 (465)
...+..+...+...|++++|...++........+ ...++..+..++...|++++|...+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4455666666667778888888777776543222 23467777777777788888888877776542 33345555555
Q ss_pred HHHH-------hcCCHHHHHHHHHHH
Q 012365 124 AGYF-------RKKDVQGALMVLKEM 142 (465)
Q Consensus 124 ~~~~-------~~g~~~~a~~~~~~m 142 (465)
..+. ..|+++.|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 5555 677777555555443
No 172
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.49 E-value=0.0032 Score=48.55 Aligned_cols=94 Identities=13% Similarity=0.070 Sum_probs=74.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 012365 50 NSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129 (465)
Q Consensus 50 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 129 (465)
-.+...+...|++++|.++|+.+.... +-+..-|-.|..++-..|++++|...|......+ +-|+..+-.+..++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 344455667888999999988888775 4566777778888888888999999888887776 46778888888888888
Q ss_pred CCHHHHHHHHHHHHHC
Q 012365 130 KDVQGALMVLKEMEQA 145 (465)
Q Consensus 130 g~~~~a~~~~~~m~~~ 145 (465)
|+.+.|.+.|+.....
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999988888877653
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.49 E-value=0.029 Score=49.42 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=34.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHHccCcHHHHHHHHHHHcCCC
Q 012365 220 KSALVSALASHGRTSDAIIVYEEIKEAGCN-----LEPR-AVIALIEHLNSEGELNRLIQLLEEVHDPD 282 (465)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-----p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 282 (465)
+..+...+.+.|++++|.++|++....... ++.. .|...+-++...|+...|.+.++......
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 555666677777777777777776554221 1111 22233334555677777777777766543
No 174
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.47 E-value=0.015 Score=44.88 Aligned_cols=96 Identities=6% Similarity=-0.013 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 012365 12 ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLN 91 (465)
Q Consensus 12 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 91 (465)
...-.+-..+...|++++|..+|+.+....+. +..-|-.|..++-..|++.+|...|....... +-|+..+-.+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 33444555666789999999999988775433 55566667777777889999999998888876 46788888888888
Q ss_pred hccCCHHHHHHHHHHHHH
Q 012365 92 VKIKDFDSAYSLLDDLKE 109 (465)
Q Consensus 92 ~~~g~~~~a~~~~~~m~~ 109 (465)
...|+.+.|.+.|+..+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 889999999988887664
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.44 E-value=0.031 Score=53.50 Aligned_cols=145 Identities=14% Similarity=0.060 Sum_probs=102.5
Q ss_pred CCCCCHHHHHHHHHHHhcc-----cCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHH
Q 012365 6 EITPSSASYKKLITYSCDL-----LKVHVALDVVEQMVQGELVPSTETINSILHACEES--------YEFNLVRRIYPMI 72 (465)
Q Consensus 6 ~~~p~~~~y~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--------~~~~~a~~~~~~~ 72 (465)
+.+.|...|...+++.... ++...|.++|++..+..+. ....|..+..++... .++..+.+..+..
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 4567889999999986543 3378999999999986432 344555444333222 1233444444443
Q ss_pred hhC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 012365 73 CHH-NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151 (465)
Q Consensus 73 ~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 151 (465)
... ..+.+...|..+.-.....|++++|...+++..+.+ |+...|..+...+...|+.++|.+.|++.... .|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCC
Confidence 332 234566788877666777899999999999999875 78999999999999999999999999998764 4544
Q ss_pred HHHH
Q 012365 152 QTFS 155 (465)
Q Consensus 152 ~~~~ 155 (465)
.||.
T Consensus 487 pt~~ 490 (517)
T PRK10153 487 NTLY 490 (517)
T ss_pred chHH
Confidence 4443
No 176
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.41 E-value=0.0087 Score=52.56 Aligned_cols=142 Identities=12% Similarity=0.027 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHcCCC-CCccchhhHhhH-hhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHH
Q 012365 253 RAVIALIEHLNSEGELNRLIQLLEEVHDPD-YWMDGCCRLILH-CVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIF 330 (465)
Q Consensus 253 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 330 (465)
.+|..++...-+.+..+.|..+|++..+.+ ...+.|...... +...++.+.|.++|+...+....+...|...+.-++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 345666666666677777777777776543 223333322222 334566777899998888876677777776666555
Q ss_pred HhhhcCCCCchhhhHHhHHHHHhhcCCCCcH---HHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 012365 331 CQIATTDPPDVQIGLDLLQFIKDELGLPPSR---KCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYK 404 (465)
Q Consensus 331 ~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~---~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 404 (465)
.. ++.+.|..+|++.. .. +.++. ..|...+.--.+.|+.+.+..+.+++.+. -|+......+++
T Consensus 82 ~~------~d~~~aR~lfer~i-~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 82 KL------NDINNARALFERAI-SS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HT------T-HHHHHHHHHHHC-CT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred Hh------CcHHHHHHHHHHHH-Hh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 44 88999999999988 22 33333 48999999888999999999999999885 444444444444
No 177
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.40 E-value=0.03 Score=52.79 Aligned_cols=78 Identities=9% Similarity=0.013 Sum_probs=43.9
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCC
Q 012365 221 SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQ 300 (465)
Q Consensus 221 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (465)
..+..-+-+...+.-|-++|..|-+.. ++++.....+++++|..+-+...+. .++.|.......+...+
T Consensus 751 ~~~a~ylk~l~~~gLAaeIF~k~gD~k---------siVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~Dr 819 (1081)
T KOG1538|consen 751 LLCATYLKKLDSPGLAAEIFLKMGDLK---------SLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDR 819 (1081)
T ss_pred HHHHHHHhhccccchHHHHHHHhccHH---------HHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhh
Confidence 334444445556667777777764432 5666777888888888777665442 23333333333444455
Q ss_pred hhHHHHHHH
Q 012365 301 LSSATDLLK 309 (465)
Q Consensus 301 ~~~a~~~~~ 309 (465)
+++|.+.|-
T Consensus 820 FeEAqkAfh 828 (1081)
T KOG1538|consen 820 FEEAQKAFH 828 (1081)
T ss_pred HHHHHHHHH
Confidence 555555443
No 178
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.37 E-value=0.12 Score=47.92 Aligned_cols=370 Identities=11% Similarity=0.094 Sum_probs=198.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 012365 43 VPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122 (465)
Q Consensus 43 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 122 (465)
+-|..+|..|++-+... ..+++.+.++++... ++-+...|..-|..-.+..+++.++.+|.+.... ..+...|..-
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 45899999999988766 999999999999875 3667889999999999999999999999997765 3567778777
Q ss_pred HHHHHh-cCCHHH----HHHHHHHHH-HCCCCCCH-HH---HHHHHHh---hCChh---H---HHHHHHHHHHcCCCCCH
Q 012365 123 MAGYFR-KKDVQG----ALMVLKEME-QANVKPDS-QT---FSYLIHN---CSNEE---D---IIKYYEQLKSAGGQITK 183 (465)
Q Consensus 123 i~~~~~-~g~~~~----a~~~~~~m~-~~~~~p~~-~~---~~~ll~~---~~~~~---~---~~~~~~~~~~~~~~~~~ 183 (465)
|.--.+ +|+... ..+.|+-.. +.|+.+-+ .. |...+.. .++.. . +.++++.+...-+.-=.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 764332 333333 223333322 34543322 12 2233332 22221 1 22333333322111001
Q ss_pred HHH------HHHHHHH-------HhcCCHHHHHHHHHHh------------cCCCCChHH------HHHHHHHHHHcCCC
Q 012365 184 YVF------MALINAY-------TTCGEFEKARQVVLDA------------EIPVKSRSE------VKSALVSALASHGR 232 (465)
Q Consensus 184 ~~~------~~l~~~~-------~~~g~~~~a~~~~~~~------------~~~~~~~~~------~~~~l~~~~~~~g~ 232 (465)
..| ..-|+.. -+...+..|.+++++. ..+++.+.. .|-.+|.-=-.++.
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 111 1111111 1223455566666542 011111110 13333332211111
Q ss_pred h--------hHHHHHHHH-HHHcCCCCCHHHH-HHHH----HHHHccCc-------HHHHHHHHHHHcCCCCCcc--chh
Q 012365 233 T--------SDAIIVYEE-IKEAGCNLEPRAV-IALI----EHLNSEGE-------LNRLIQLLEEVHDPDYWMD--GCC 289 (465)
Q Consensus 233 ~--------~~a~~~~~~-m~~~~~~p~~~~~-~~ll----~~~~~~g~-------~~~a~~~~~~~~~~~~~~~--~~~ 289 (465)
- ....=.+++ |.-.+..|+..-. ...+ +.+...|+ .+++..+++...+.-.... .+.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 011111222 1112333332211 1111 12222333 2344444444332111111 111
Q ss_pred hHhhHhh---hcCChhHHHHHHHHHHHc-ccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCC-cHHHH
Q 012365 290 RLILHCV---RFKQLSSATDLLKQLKDK-FKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPP-SRKCL 364 (465)
Q Consensus 290 ~~~~~~~---~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~~~ 364 (465)
.+...-- .....+.....+++.... ....+..+-..+...-.. ..++.|..+|.+.+ +.+..+ ++..+
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~------eGlkaaR~iF~kaR-~~~r~~hhVfVa 405 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRA------EGLKAARKIFKKAR-EDKRTRHHVFVA 405 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHh------hhHHHHHHHHHHHh-hccCCcchhhHH
Confidence 1111100 111345555666666553 333444444444433332 67899999999999 777777 77777
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCC
Q 012365 365 DFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKD 425 (465)
Q Consensus 365 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 425 (465)
++++.-+| .+|.+-|.++|+--.++ ++.++.--...++-+...|+-..|..+|++.+..
T Consensus 406 ~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 406 AALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 88887664 58899999999988876 5666666677888888999999999999999877
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.33 E-value=0.084 Score=45.20 Aligned_cols=197 Identities=10% Similarity=-0.041 Sum_probs=97.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcCCCCChHHH---HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 012365 188 ALINAYTTCGEFEKARQVVLDAEIPVKSRSEV---KSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS 264 (465)
Q Consensus 188 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 264 (465)
.....+...|++++|.+.|+......+..... .-.+..++.+.+++++|...+++..+....-....+...+.+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 34445566788888888887743322222221 234566777888888888888887776532223334344444331
Q ss_pred cCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhh
Q 012365 265 EGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIG 344 (465)
Q Consensus 265 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A 344 (465)
... ....+......+.. .........|+..|+.+.+..+.... ..+|
T Consensus 117 ~~~---~~~~~~~~~~~~~~----------~rD~~~~~~A~~~~~~li~~yP~S~y--------------------a~~A 163 (243)
T PRK10866 117 MAL---DDSALQGFFGVDRS----------DRDPQHARAAFRDFSKLVRGYPNSQY--------------------TTDA 163 (243)
T ss_pred hhc---chhhhhhccCCCcc----------ccCHHHHHHHHHHHHHHHHHCcCChh--------------------HHHH
Confidence 100 00001110000000 00111233455556665553221111 1122
Q ss_pred HHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHc--CCCCChhHHHHHHHHHHhcCChhhHHHHHhcc
Q 012365 345 LDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENA--GLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422 (465)
Q Consensus 345 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 422 (465)
...+..+.+. --. .--.+.+-|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|.+....+
T Consensus 164 ~~rl~~l~~~----la~-~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 164 TKRLVFLKDR----LAK-YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHH----HHH-HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 2211111100 000 0113455577788888888888888865 33334446667778888888888888766543
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.28 E-value=0.033 Score=43.90 Aligned_cols=158 Identities=11% Similarity=0.089 Sum_probs=97.0
Q ss_pred HHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCC
Q 012365 17 LITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKD 96 (465)
Q Consensus 17 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 96 (465)
+..+..+.=|+++...-..+-.. ..|+...--.|..++.+.|+..+|...|++...--+.-|....-.+..+....++
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~ 139 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE 139 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc
Confidence 44444444455544433332222 3455555556777788888888888888887765555677777777777777788
Q ss_pred HHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHhhCChhHHH----HH
Q 012365 97 FDSAYSLLDDLKEMN-LMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD-SQTFSYLIHNCSNEEDII----KY 170 (465)
Q Consensus 97 ~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~----~~ 170 (465)
+..|...++++-+.. -..++.+.-.+.+.+...|....|..-|+.....---|. ...|..++..-++..++. .+
T Consensus 140 ~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 140 FAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 888888888776542 001233445566777778888888888887775422222 345666666666554433 34
Q ss_pred HHHHHH
Q 012365 171 YEQLKS 176 (465)
Q Consensus 171 ~~~~~~ 176 (465)
++.+.+
T Consensus 220 ~d~~~r 225 (251)
T COG4700 220 VDTAKR 225 (251)
T ss_pred HHHHHh
Confidence 555444
No 181
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.26 E-value=0.025 Score=41.99 Aligned_cols=103 Identities=9% Similarity=0.003 Sum_probs=57.8
Q ss_pred HHHhcccCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHh
Q 012365 19 TYSCDLLKVHVALDVVEQMVQGELVPS--TETINSILHACEESYEFNLVRRIYPMICHHNLKPN----SETFRSMISLNV 92 (465)
Q Consensus 19 ~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~ 92 (465)
.++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++...... |+ ......+..++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 344556777777777777777665433 2344445556666777777777777766542 22 222222333455
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012365 93 KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127 (465)
Q Consensus 93 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 127 (465)
..|+.++|.+.+-.... ++...|.--|..|.
T Consensus 87 ~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 66777777776655443 23334544444443
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.25 E-value=0.0012 Score=43.62 Aligned_cols=23 Identities=0% Similarity=0.065 Sum_probs=8.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHh
Q 012365 51 SILHACEESYEFNLVRRIYPMIC 73 (465)
Q Consensus 51 ~ll~~~~~~~~~~~a~~~~~~~~ 73 (465)
.+..++.+.|++++|.++++.+.
T Consensus 30 ~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 30 LLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHHHHHHHTT-HHHHHHHHHCCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333333444444444433333
No 183
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.23 E-value=0.0097 Score=46.55 Aligned_cols=70 Identities=16% Similarity=0.273 Sum_probs=52.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHH
Q 012365 83 TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME-----QANVKPDSQT 153 (465)
Q Consensus 83 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~~ 153 (465)
+...++..+...|+++.|..+.+.+.... |-|...|..+|.+|...|+...|.++|+++. +.|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 55567777888899999999999988776 6788899999999999999999999998875 3477777655
No 184
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.22 E-value=0.037 Score=47.32 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=22.8
Q ss_pred HHHHHHHhcCChhhHHHHHhccCCCCCC
Q 012365 401 WMYKAFLASGNRKSASKLLSKMPKDDPH 428 (465)
Q Consensus 401 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 428 (465)
.+..-|.+.|++.-|..-++.+.++-|.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~ 207 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPD 207 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCC
Confidence 4566788999999999999999887663
No 185
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.17 E-value=0.0038 Score=40.79 Aligned_cols=59 Identities=24% Similarity=0.230 Sum_probs=42.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcC
Q 012365 189 LINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247 (465)
Q Consensus 189 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 247 (465)
+...+.+.|++++|.+.|++.....+.....+..+..++...|++++|...|+++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34567788888888888887554445455567778888888888888888888887655
No 186
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.17 E-value=0.36 Score=49.31 Aligned_cols=97 Identities=21% Similarity=0.116 Sum_probs=60.9
Q ss_pred hhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHH--HHHHHHH
Q 012365 292 ILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRK--CLDFLLG 369 (465)
Q Consensus 292 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~--~~~~ll~ 369 (465)
...|.++|+.++|+..++.. |++++|+.+-.++. ..-+.. +-..|..
T Consensus 959 al~Ye~~GklekAl~a~~~~---------------------------~dWr~~l~~a~ql~----~~~de~~~~a~~L~s 1007 (1265)
T KOG1920|consen 959 ALMYERCGKLEKALKAYKEC---------------------------GDWREALSLAAQLS----EGKDELVILAEELVS 1007 (1265)
T ss_pred HHHHHHhccHHHHHHHHHHh---------------------------ccHHHHHHHHHhhc----CCHHHHHHHHHHHHH
Confidence 33445667777777666543 77777777777665 111111 1245666
Q ss_pred HhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCC
Q 012365 370 ACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDP 427 (465)
Q Consensus 370 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 427 (465)
-+...++.-+|-++..+..+. ....+..|++...|++|.++.....+.+.
T Consensus 1008 ~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~~~d~ 1057 (1265)
T KOG1920|consen 1008 RLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAKRDDI 1057 (1265)
T ss_pred HHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcccchH
Confidence 677778888887777776653 34455566777788888887777665444
No 187
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.16 E-value=0.012 Score=46.13 Aligned_cols=110 Identities=11% Similarity=0.192 Sum_probs=75.1
Q ss_pred CHHHHHHHHHH---HhcccCHHHHHHHHHHHHhC--CC-CCC------H------------HHHHHHHHHHHhcCCHHHH
Q 012365 10 SSASYKKLITY---SCDLLKVHVALDVVEQMVQG--EL-VPS------T------------ETINSILHACEESYEFNLV 65 (465)
Q Consensus 10 ~~~~y~~li~~---~~~~g~~~~A~~~~~~m~~~--~~-~p~------~------------~~~~~ll~~~~~~~~~~~a 65 (465)
|...|..++.. ....|+.+.+.+.++++... |. -|+ . .....++..+...|+++.|
T Consensus 2 D~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 2 DVDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence 44556666443 35578999999999998763 21 111 0 1333445556678999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-----HcCCCCCHHHHH
Q 012365 66 RRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLK-----EMNLMPTASMYN 120 (465)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~~~~~ 120 (465)
.++...+.... +.+...|..+|.+|...|+...|.++|+++. +.|++|+..+-.
T Consensus 82 ~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 82 LRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 99999999876 6788999999999999999999999998874 458889876543
No 188
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.13 E-value=0.07 Score=50.43 Aligned_cols=26 Identities=12% Similarity=0.102 Sum_probs=15.6
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHH
Q 012365 78 KPNSETFRSMISLNVKIKDFDSAYSL 103 (465)
Q Consensus 78 ~~~~~~~~~li~~~~~~g~~~~a~~~ 103 (465)
.|....+.+-+..|...|.+++|.++
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~i 578 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQI 578 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcc
Confidence 34444555555667777777776554
No 189
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.12 E-value=0.016 Score=46.57 Aligned_cols=62 Identities=10% Similarity=-0.028 Sum_probs=28.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012365 83 TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMP--TASMYNAIMAGYFRKKDVQGALMVLKEMEQ 144 (465)
Q Consensus 83 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 144 (465)
.|..+...+...|++++|...|++.......+ ...+|..+...+...|++++|...+++...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444555555555555544321111 122444455555555555555555555443
No 190
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.034 Score=46.41 Aligned_cols=140 Identities=11% Similarity=0.090 Sum_probs=101.3
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCccch-------hhHh
Q 012365 220 KSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC-------CRLI 292 (465)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~ 292 (465)
.+.++..+...|.+.-....+++.++...+-++.....|.+.-.+.|+.+.|...|++..+..-..+.. ....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 467777788888899999999999998767788888889999999999999999999776543222211 1223
Q ss_pred hHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHH
Q 012365 293 LHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLL 368 (465)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll 368 (465)
..+.-.+++.+|...|.++......+....|.-..+.+-. |+...|++..+.|. ...|.+.+-++++
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYl------g~l~DAiK~~e~~~---~~~P~~~l~es~~ 326 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYL------GKLKDALKQLEAMV---QQDPRHYLHESVL 326 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHH------HHHHHHHHHHHHHh---ccCCccchhhhHH
Confidence 3455677888999999888875555555444433333333 88999999999998 6667766665544
No 191
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.08 E-value=0.022 Score=45.96 Aligned_cols=63 Identities=8% Similarity=0.006 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012365 82 ETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPT--ASMYNAIMAGYFRKKDVQGALMVLKEMEQ 144 (465)
Q Consensus 82 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 144 (465)
..+..+...+...|++++|...|++....+-.+. ...+..+...+.+.|++++|...+++..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555556666666666665554321111 24555555566666666666666665554
No 192
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.99 E-value=0.067 Score=45.74 Aligned_cols=101 Identities=10% Similarity=0.173 Sum_probs=77.1
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 012365 56 CEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135 (465)
Q Consensus 56 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 135 (465)
+.+.+++.+|...|.+.++.. +-|.+.|..-..+|++.|.++.|.+=.+.....+ +....+|..|-.+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 446788888888888888775 5677778888888888888888888777777654 34466788888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHh
Q 012365 136 LMVLKEMEQANVKPDSQTFSYLIHN 160 (465)
Q Consensus 136 ~~~~~~m~~~~~~p~~~~~~~ll~~ 160 (465)
.+.|++..+ +.|+..+|-.=|..
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHHH
Confidence 888887765 56777777776665
No 193
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.96 E-value=0.26 Score=44.01 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHH
Q 012365 13 SYKKLITYSCDLLKVHVALDVVEQ 36 (465)
Q Consensus 13 ~y~~li~~~~~~g~~~~A~~~~~~ 36 (465)
+|..+...-...|+.+-|..+++.
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~ 25 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLEL 25 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHc
Confidence 466677777788999999887763
No 194
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.95 E-value=0.0027 Score=42.70 Aligned_cols=62 Identities=13% Similarity=0.062 Sum_probs=51.8
Q ss_pred HHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCChhH
Q 012365 369 GACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRF 431 (465)
Q Consensus 369 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 431 (465)
..|.+.++++.|.++++.+.+. .|.++..|......|.+.|++++|.+.+++..+.+|....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL-DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh-CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 4577889999999999999987 3777788888888999999999999999998888775433
No 195
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.089 Score=45.17 Aligned_cols=112 Identities=12% Similarity=0.006 Sum_probs=88.4
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhcc---CCHHHHHHHHHHH
Q 012365 31 LDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKI---KDFDSAYSLLDDL 107 (465)
Q Consensus 31 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m 107 (465)
..-++.-.+.++ -|...|-.|..+|...|+++.|..-|....+.. ++++..+..+..++... .+..++..+|++.
T Consensus 142 ~a~Le~~L~~nP-~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a 219 (287)
T COG4235 142 IARLETHLQQNP-GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQA 219 (287)
T ss_pred HHHHHHHHHhCC-CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 333333344443 388899999999999999999999999998865 56778777777665544 3457889999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 012365 108 KEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145 (465)
Q Consensus 108 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 145 (465)
...+ +-|+.+...|...+...|++.+|...|+.|.+.
T Consensus 220 l~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 220 LALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 8876 567788888888999999999999999999975
No 196
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.91 E-value=0.13 Score=42.87 Aligned_cols=170 Identities=14% Similarity=0.134 Sum_probs=86.7
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCC-cc---chhhHhhH
Q 012365 221 SALVSALASHGRTSDAIIVYEEIKEAGCN--LEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW-MD---GCCRLILH 294 (465)
Q Consensus 221 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~---~~~~~~~~ 294 (465)
-.....+...|++.+|.+.|+.+...-.. --....-.+..++.+.|+++.|...++...+.-+. +. .+..+...
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence 34556667788999999999998876421 12344556777888888888888888887653222 11 11222221
Q ss_pred hhhc--------C---ChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHH
Q 012365 295 CVRF--------K---QLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKC 363 (465)
Q Consensus 295 ~~~~--------~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~ 363 (465)
+... . ...+|...|+.+....+ +..-..+|...+..+.+.. ...
T Consensus 89 ~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP--------------------~S~y~~~A~~~l~~l~~~l-----a~~ 143 (203)
T PF13525_consen 89 YYKQIPGILRSDRDQTSTRKAIEEFEELIKRYP--------------------NSEYAEEAKKRLAELRNRL-----AEH 143 (203)
T ss_dssp HHHHHHHHH-TT---HHHHHHHHHHHHHHHH-T--------------------TSTTHHHHHHHHHHHHHHH-----HHH
T ss_pred HHHhCccchhcccChHHHHHHHHHHHHHHHHCc--------------------CchHHHHHHHHHHHHHHHH-----HHH
Confidence 1110 0 01122222222222100 0122222322222222000 000
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChh---HHHHHHHHHHhcCChhhHH
Q 012365 364 LDFLLGACVNARDLKRAHLIWKEYENAGLPYNVL---SYLWMYKAFLASGNRKSAS 416 (465)
Q Consensus 364 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~g~~~~A~ 416 (465)
--.+..-|.+.|.+..|..-++.+++. .|-+.. ....++.+|.+.|..+.|.
T Consensus 144 e~~ia~~Y~~~~~y~aA~~r~~~v~~~-yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 144 ELYIARFYYKRGKYKAAIIRFQYVIEN-YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 112456678889999999999999886 333333 5667778888888877544
No 197
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.87 E-value=0.055 Score=40.20 Aligned_cols=104 Identities=15% Similarity=0.108 Sum_probs=73.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHH
Q 012365 52 ILHACEESYEFNLVRRIYPMICHHNLKPN--SETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPT----ASMYNAIMAG 125 (465)
Q Consensus 52 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~ 125 (465)
+..++-..|+.++|..+|++....|.... ...+-.+.+.+...|++++|..+|++..... |+ ......+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 44566778999999999999999886544 3456667778888999999999999887642 44 2222333456
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 012365 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC 161 (465)
Q Consensus 126 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 161 (465)
+...|+.++|++.+-.... ++...|.--|..|
T Consensus 85 L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~y 116 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA----ETLPRYRRAIRFY 116 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 7788999999998877654 2333454444433
No 198
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.83 E-value=0.0077 Score=39.90 Aligned_cols=62 Identities=15% Similarity=0.270 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 012365 81 SETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK-DVQGALMVLKEME 143 (465)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~ 143 (465)
..+|..+...+...|++++|+..|++..+.+ +.+...|..+..++.+.| ++++|++.+++..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3344444445555555555555555544443 233444444555555555 4555555554443
No 199
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.77 E-value=0.035 Score=41.70 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHH
Q 012365 77 LKPNSETFRSMISLNVKIKDFDSAYSLLDDLK-EMNLMPTASMYNAIMA 124 (465)
Q Consensus 77 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~~~~li~ 124 (465)
..|+..+..+++.+|+..|++..|.++.+... ..+++-+...|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34555555666666666666666666555543 3344445555555554
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.76 E-value=0.13 Score=40.66 Aligned_cols=135 Identities=13% Similarity=-0.007 Sum_probs=92.6
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcC---CCCCH
Q 012365 177 AGGQITKYVFMALINAYTTCGEFEKARQVVLDAE-IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG---CNLEP 252 (465)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---~~p~~ 252 (465)
....|+...-..|..++...|+..+|...|++.- .....+....-.+.++....+++..|...++.+.+.+ -.||
T Consensus 83 ~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd- 161 (251)
T COG4700 83 LAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD- 161 (251)
T ss_pred HhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC-
Confidence 3456777777778888888899999998888732 2233333345667777788888888888888877764 2233
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHH
Q 012365 253 RAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKD 313 (465)
Q Consensus 253 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 313 (465)
+.-.+...+...|+...|..-|+.....-+.+.+.........+.|+.+++..-+..+.+
T Consensus 162 -~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 162 -GHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred -chHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 334566778888888888888888877666666555555556677777666555444443
No 201
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.74 E-value=0.59 Score=45.00 Aligned_cols=222 Identities=13% Similarity=0.106 Sum_probs=109.8
Q ss_pred CCCHHHHHHHHHHHhcccCHHHHHHHHHHHHh-CCCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 012365 8 TPSSASYKKLITYSCDLLKVHVALDVVEQMVQ-GELVP--------STETINSILHACEESYEFNLVRRIYPMICHHNLK 78 (465)
Q Consensus 8 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 78 (465)
.|-+..|..+...-...-.++.|...|-+... .|++. +...-..=+ -+--|++++|+++|-.|.++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei--~~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEI--SAFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhH--hhhhcchhHhhhhhhccchhh--
Confidence 46677777777777777777777777665533 23321 000000111 122367777777776665553
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------------
Q 012365 79 PNSETFRSMISLNVKIKDFDSAYSLLDDLKEM-NLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQ------------- 144 (465)
Q Consensus 79 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~------------- 144 (465)
..|..+.+.|++-.+.++++.--.. +-+.-...|+.+...++....|++|.+.|..-..
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~ 837 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLEL 837 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHh
Confidence 3445555566665555554321100 0011134566666666666666666555544211
Q ss_pred --------CCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCh
Q 012365 145 --------ANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSR 216 (465)
Q Consensus 145 --------~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 216 (465)
..++-+......+-..+.+.|.-++..+...+.+.+ ...++.|...++|.+|.++-++...+...+
T Consensus 838 f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p------kaAv~tCv~LnQW~~avelaq~~~l~qv~t 911 (1189)
T KOG2041|consen 838 FGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP------KAAVHTCVELNQWGEAVELAQRFQLPQVQT 911 (1189)
T ss_pred hhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCc------HHHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 112223333333334444444444444444443322 234566677777777777776533332221
Q ss_pred HHH-----------HHHHHHHHHcCCChhHHHHHHHHHHHc
Q 012365 217 SEV-----------KSALVSALASHGRTSDAIIVYEEIKEA 246 (465)
Q Consensus 217 ~~~-----------~~~l~~~~~~~g~~~~a~~~~~~m~~~ 246 (465)
... ..--|..+.+.|++-+|-+++.+|-++
T Consensus 912 liak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 912 LIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred HHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 110 011234455667766777777776543
No 202
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.06 Score=46.20 Aligned_cols=37 Identities=11% Similarity=-0.067 Sum_probs=24.4
Q ss_pred HHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHH
Q 012365 277 EVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKD 313 (465)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 313 (465)
.+...+-+..+|..+..+|...++++.|...|.+..+
T Consensus 148 ~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 148 HLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred HHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3344445566677777777777777777777776665
No 203
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=0.094 Score=43.91 Aligned_cols=147 Identities=10% Similarity=0.079 Sum_probs=89.1
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 012365 24 LLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103 (465)
Q Consensus 24 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 103 (465)
....+..+++|++=.. ...+.++..+...|.+.-....+....+..-+.++...+.|++.-.+.||.+.|...
T Consensus 162 ~~~~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~y 234 (366)
T KOG2796|consen 162 GLAEESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKY 234 (366)
T ss_pred ccchhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHH
Confidence 3344666666665432 244556666667777777778888877766566777778888888888888888888
Q ss_pred HHHHHHcCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHh-hCChhHHHHHHHHHH
Q 012365 104 LDDLKEMNLMPTASMYNA-----IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFS--YLIHN-CSNEEDIIKYYEQLK 175 (465)
Q Consensus 104 ~~~m~~~~~~~~~~~~~~-----li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~-~~~~~~~~~~~~~~~ 175 (465)
|++..+..-..|..+.+. ....|..++++.+|...|.+....+- .|....| +++.- .++..++.+..+.++
T Consensus 235 f~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~ 313 (366)
T KOG2796|consen 235 FQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMV 313 (366)
T ss_pred HHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHh
Confidence 886654432334333333 33445667777777777777665321 1111111 22222 355666666777776
Q ss_pred HcC
Q 012365 176 SAG 178 (465)
Q Consensus 176 ~~~ 178 (465)
...
T Consensus 314 ~~~ 316 (366)
T KOG2796|consen 314 QQD 316 (366)
T ss_pred ccC
Confidence 654
No 204
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.70 E-value=0.042 Score=41.29 Aligned_cols=86 Identities=8% Similarity=0.090 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHhcccCHHHHHHHHHHHHh---------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 012365 10 SSASYKKLITYSCDLLKVHVALDVVEQMVQ---------------GELVPSTETINSILHACEESYEFNLVRRIYPMICH 74 (465)
Q Consensus 10 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~---------------~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 74 (465)
|..++.++|.++++.|+++....+++..-. ....|+..+..+++.+++..|++..|.++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 567899999999999999999999987621 12458899999999999999999999999998875
Q ss_pred -CCCCCCHHHHHHHHHHHhccC
Q 012365 75 -HNLKPNSETFRSMISLNVKIK 95 (465)
Q Consensus 75 -~~~~~~~~~~~~li~~~~~~g 95 (465)
.+++.+..+|..|+.-....-
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhc
Confidence 678888999999998655443
No 205
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.64 E-value=0.49 Score=42.78 Aligned_cols=27 Identities=22% Similarity=0.147 Sum_probs=18.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHc
Q 012365 220 KSALVSALASHGRTSDAIIVYEEIKEA 246 (465)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 246 (465)
+.+++.+..-.|++++|.+..+.|...
T Consensus 308 ~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 308 VATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 455666667777777777777777654
No 206
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.55 E-value=0.035 Score=46.85 Aligned_cols=89 Identities=19% Similarity=0.286 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------------CHHHHH
Q 012365 78 KPNSETFRSMISLNVKI-----KDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK----------------DVQGAL 136 (465)
Q Consensus 78 ~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----------------~~~~a~ 136 (465)
+.|..+|-..+..+... +.++-....++.|.+.|+..|..+|+.||+.+-+-. +-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 34555666655555433 455555566677777777777777777776654322 123456
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHhhCChhH
Q 012365 137 MVLKEMEQANVKPDSQTFSYLIHNCSNEED 166 (465)
Q Consensus 137 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 166 (465)
.++++|...|+.||..+-..++.++++.+-
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 666777767777776666666666666543
No 207
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.52 E-value=0.0053 Score=41.89 Aligned_cols=62 Identities=10% Similarity=0.021 Sum_probs=50.2
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHc--CCC---CC-hhHHHHHHHHHHhcCChhhHHHHHhccC
Q 012365 362 KCLDFLLGACVNARDLKRAHLIWKEYENA--GLP---YN-VLSYLWMYKAFLASGNRKSASKLLSKMP 423 (465)
Q Consensus 362 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--g~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 423 (465)
.+|+.+...|...|++++|+..|++..+. ..+ |+ ..++..+...|...|++++|.+++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788889999999999999999999854 122 22 4488899999999999999999998754
No 208
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.51 E-value=0.1 Score=45.14 Aligned_cols=97 Identities=7% Similarity=-0.005 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHH
Q 012365 13 SYKKLITYSCDLLKVHVALDVVEQMVQGELVPS--TETINSILHACEESYEFNLVRRIYPMICHHN--LKPNSETFRSMI 88 (465)
Q Consensus 13 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li 88 (465)
.|+..+..+.+.|++++|+..|+.+.+.-+... ...+-.+..++...|++++|...|+.+.+.- -+.....+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444433444555555555555554321110 1233344455555555555555555555421 011122333333
Q ss_pred HHHhccCCHHHHHHHHHHHHH
Q 012365 89 SLNVKIKDFDSAYSLLDDLKE 109 (465)
Q Consensus 89 ~~~~~~g~~~~a~~~~~~m~~ 109 (465)
..+...|+.+.|..+|+.+..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 444455555555555555544
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.43 E-value=0.027 Score=37.72 Aligned_cols=54 Identities=15% Similarity=0.238 Sum_probs=28.5
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012365 90 LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQ 144 (465)
Q Consensus 90 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 144 (465)
.|.+.++++.|.++++.+...+ |.+...|......+.+.|++++|.+.|+...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3445555555555555555443 33444455555555555555555555555553
No 210
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.40 E-value=0.062 Score=46.44 Aligned_cols=93 Identities=15% Similarity=0.134 Sum_probs=59.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCcHHHHHHHHHHHcCCC----CCccchhhH
Q 012365 220 KSALVSALASHGRTSDAIIVYEEIKEAGCNLE----PRAVIALIEHLNSEGELNRLIQLLEEVHDPD----YWMDGCCRL 291 (465)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~ 291 (465)
|...+..+.+.|++++|...|+.+.... |+ +..+..+..+|...|++++|...|+.+.+.. ..++.+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 5554544455677777777777777654 33 2455566677777777777777777775422 234455556
Q ss_pred hhHhhhcCChhHHHHHHHHHHHc
Q 012365 292 ILHCVRFKQLSSATDLLKQLKDK 314 (465)
Q Consensus 292 ~~~~~~~~~~~~a~~~~~~~~~~ 314 (465)
...+...|+.+.|..+|+.+.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 66666777788888877777663
No 211
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.36 E-value=0.7 Score=41.31 Aligned_cols=84 Identities=13% Similarity=0.190 Sum_probs=63.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcC
Q 012365 220 KSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFK 299 (465)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (465)
.+..|.-+...|+...|.++-.+. ++ ||..-|...+.+++..++|++..++.+. .-+|-+|-..+.+|...|
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s----kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS----KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC----CCCCCChHHHHHHHHHCC
Confidence 455577777788888777775554 33 7888888999999999999888776543 234677888888888888
Q ss_pred ChhHHHHHHHHH
Q 012365 300 QLSSATDLLKQL 311 (465)
Q Consensus 300 ~~~~a~~~~~~~ 311 (465)
+..+|..+..++
T Consensus 252 ~~~eA~~yI~k~ 263 (319)
T PF04840_consen 252 NKKEASKYIPKI 263 (319)
T ss_pred CHHHHHHHHHhC
Confidence 888888887763
No 212
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.33 E-value=0.82 Score=41.79 Aligned_cols=372 Identities=14% Similarity=0.124 Sum_probs=199.1
Q ss_pred cccCHHHHHHHHHHHHhC--CCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC----CCCHHHH
Q 012365 23 DLLKVHVALDVVEQMVQG--ELVP------------STETINSILHACEESYEFNLVRRIYPMICHHNL----KPNSETF 84 (465)
Q Consensus 23 ~~g~~~~A~~~~~~m~~~--~~~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~ 84 (465)
+.+++..|++.+....+. +..| |-..=+..+.++...|++.++..+++++...=+ .-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 578899999999887664 3332 222223556778899999999999998876433 3789999
Q ss_pred HHHHHHHhccCCH---------------HHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHH
Q 012365 85 RSMISLNVKIKDF---------------DSAYSLLDDLKEM------NLMPTASMYNAIMAGYFRK--KDVQGALMVLKE 141 (465)
Q Consensus 85 ~~li~~~~~~g~~---------------~~a~~~~~~m~~~------~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~ 141 (465)
+.++-.+++.--. +.+.-..++|... .+.|-......++....-. .+..--.++++.
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 9977777654211 1111122222211 1233333333333332221 122222333333
Q ss_pred HHHCCCCCCHHHH-HHHHHhh-CChhHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCC
Q 012365 142 MEQANVKPDSQTF-SYLIHNC-SNEEDIIKYYEQLKSAGGQI----TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKS 215 (465)
Q Consensus 142 m~~~~~~p~~~~~-~~ll~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 215 (465)
-...-+.|+.... ..+...+ ....++..+-+.+....+.+ =..++..++....+.++...|.+.+.-+..-.+.
T Consensus 251 We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~ 330 (549)
T PF07079_consen 251 WENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR 330 (549)
T ss_pred HHhhccCCchhHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 3334455654322 2222222 23333333333333222111 1346777888888999988888877653222221
Q ss_pred hHHH------HHHHHHHHHc----CCChhHHHHHHHHHHHcCCCCCHHHH-HHHH---HHHHccCc-HHHHHHHHHHHcC
Q 012365 216 RSEV------KSALVSALAS----HGRTSDAIIVYEEIKEAGCNLEPRAV-IALI---EHLNSEGE-LNRLIQLLEEVHD 280 (465)
Q Consensus 216 ~~~~------~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~-~~ll---~~~~~~g~-~~~a~~~~~~~~~ 280 (465)
.... -..+-+..+. .-+..+-+.+|.+....+ .|..-. ..|+ .-+.+.|. -++|+++++.+.+
T Consensus 331 ~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--iDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ 408 (549)
T PF07079_consen 331 ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--IDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ 408 (549)
T ss_pred chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 1110 1222233331 122334455666666655 343322 2232 33455555 8899999998876
Q ss_pred CC-CCccchhhH---hh-Hh---hhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhc-CCCCchhhhHHhHHHH
Q 012365 281 PD-YWMDGCCRL---IL-HC---VRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIAT-TDPPDVQIGLDLLQFI 351 (465)
Q Consensus 281 ~~-~~~~~~~~~---~~-~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~A~~~~~~m 351 (465)
.. .+...-+.+ +. .| .....+.+-.++-+-+.+.+.++....+.-+...+....+ -.+|++.++.-.-...
T Consensus 409 ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL 488 (549)
T PF07079_consen 409 FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWL 488 (549)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 33 222211111 11 22 1334444555555555554444444433333322221100 0158888887665555
Q ss_pred HhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 012365 352 KDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYK 404 (465)
Q Consensus 352 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 404 (465)
. .+.|++.+|..+.-+.....++++|..++.+ +||+..++++-+.
T Consensus 489 ~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~dskvq 533 (549)
T PF07079_consen 489 T---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDSKVQ 533 (549)
T ss_pred H---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHHHHH
Confidence 5 7899999999998888999999999988765 6888888876554
No 213
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.30 E-value=0.81 Score=41.44 Aligned_cols=80 Identities=16% Similarity=0.199 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCC----hHHHHHHHHHHHHc---CCChhHHHHHHHHHHHcCCCCCHHHH
Q 012365 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKS----RSEVKSALVSALAS---HGRTSDAIIVYEEIKEAGCNLEPRAV 255 (465)
Q Consensus 183 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~ 255 (465)
..+...++-.|....+++...++.+.+...+.. ...+--...-++.+ .|+.++|++++..+....-.+++.++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 334445566788899999999999886555322 11122345566677 89999999999997666667888888
Q ss_pred HHHHHHH
Q 012365 256 IALIEHL 262 (465)
Q Consensus 256 ~~ll~~~ 262 (465)
..+...|
T Consensus 221 gL~GRIy 227 (374)
T PF13281_consen 221 GLLGRIY 227 (374)
T ss_pred HHHHHHH
Confidence 7776655
No 214
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.95 Score=40.84 Aligned_cols=49 Identities=10% Similarity=0.100 Sum_probs=27.4
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 012365 55 ACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLL 104 (465)
Q Consensus 55 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 104 (465)
++.+..++..|+..+....+.. +-+..-|..-...+...|++++|.-=.
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~da 106 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDA 106 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccch
Confidence 3445566667777777766665 233444554455555556665555443
No 215
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.04 E-value=0.32 Score=43.67 Aligned_cols=92 Identities=17% Similarity=0.059 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHH----HHcCCC-CCHHHHHHHHHHHHccCcHHHHHHHHHHHc-------CCCCCccc
Q 012365 220 KSALVSALASHGRTSDAIIVYEEI----KEAGCN-LEPRAVIALIEHLNSEGELNRLIQLLEEVH-------DPDYWMDG 287 (465)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~m----~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~ 287 (465)
|..|-..|.-.|+++.|+..-+.= ++-|-+ .....+..+-.++.-.|+++.|.+.++... .+.+....
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 555555566667777776543321 122211 112345556666666677776666665432 12222333
Q ss_pred hhhHhhHhhhcCChhHHHHHHHHH
Q 012365 288 CCRLILHCVRFKQLSSATDLLKQL 311 (465)
Q Consensus 288 ~~~~~~~~~~~~~~~~a~~~~~~~ 311 (465)
..++...|--...++.|+.++.+-
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rH 301 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRH 301 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHH
Confidence 444555554555566666655543
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.95 E-value=0.028 Score=38.22 Aligned_cols=60 Identities=15% Similarity=0.236 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHh-----cCCCCC--hHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 012365 184 YVFMALINAYTTCGEFEKARQVVLDA-----EIPVKS--RSEVKSALVSALASHGRTSDAIIVYEEI 243 (465)
Q Consensus 184 ~~~~~l~~~~~~~g~~~~a~~~~~~~-----~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m 243 (465)
.+++.+...|...|++++|+..|++. ..++.. ...+++.+...|...|++++|++.+++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555566666666666666666541 111111 1223555556666666666666665554
No 217
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.94 E-value=0.49 Score=43.59 Aligned_cols=96 Identities=13% Similarity=0.125 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 012365 78 KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTA----SMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQT 153 (465)
Q Consensus 78 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 153 (465)
+.+...++.+..+|...|++++|...|++..+.+ |+. .+|..+..+|.+.|+.++|++.+++..+.+ .| .
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~ 145 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---K 145 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---h
Confidence 3457788888889999999999999999877753 553 358889999999999999999999988752 11 2
Q ss_pred HHHHHH-----hhCChhHHHHHHHHHHHcCC
Q 012365 154 FSYLIH-----NCSNEEDIIKYYEQLKSAGG 179 (465)
Q Consensus 154 ~~~ll~-----~~~~~~~~~~~~~~~~~~~~ 179 (465)
|..+.. .+....+..++++...+.|.
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 222211 23334455556666666553
No 218
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.85 E-value=0.11 Score=43.97 Aligned_cols=89 Identities=8% Similarity=0.186 Sum_probs=70.6
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhcc----------------CCHHHHHH
Q 012365 44 PSTETINSILHACEE-----SYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKI----------------KDFDSAYS 102 (465)
Q Consensus 44 p~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------g~~~~a~~ 102 (465)
-|..+|-..+..+.. .+.++-....+..|.+.|+..|..+|+.||..+=+- .+-+-+.+
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 366677777766643 356677777788888999999999999999887543 23345889
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 012365 103 LLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132 (465)
Q Consensus 103 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 132 (465)
++++|...|+.||..+-..|++++.+.+..
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 999999999999999999999999877754
No 219
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=95.78 E-value=1.3 Score=43.93 Aligned_cols=63 Identities=16% Similarity=0.150 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHhhCC
Q 012365 12 ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYE-------FNLVRRIYPMICHHN 76 (465)
Q Consensus 12 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~~ 76 (465)
..|- +|-.|.+.|++++|.++....... .......|...+..+....+ -++...-|.+..+..
T Consensus 113 p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 113 PIWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp EHHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred ccHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 3453 777889999999999999655443 34445567777777765422 234555566555543
No 220
>PRK15331 chaperone protein SicA; Provisional
Probab=95.71 E-value=0.66 Score=36.33 Aligned_cols=87 Identities=8% Similarity=0.003 Sum_probs=71.1
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 012365 56 CEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135 (465)
Q Consensus 56 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 135 (465)
+-..|++++|..+|.-+.-.+ +-+..-+..|..++-..+++++|...|......+ .-|+..+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHH
Confidence 457899999999999988876 4567777888888888899999999998766554 35666677788889999999999
Q ss_pred HHHHHHHHH
Q 012365 136 LMVLKEMEQ 144 (465)
Q Consensus 136 ~~~~~~m~~ 144 (465)
...|....+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 999988876
No 221
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.71 E-value=0.7 Score=35.67 Aligned_cols=85 Identities=9% Similarity=-0.013 Sum_probs=42.4
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhcc
Q 012365 15 KKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKI 94 (465)
Q Consensus 15 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 94 (465)
..++..+.+.+.+......++.+...+. .+...++.++..+++.. ..+..+.+.. ..+......+++.|-+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3455555555666666666666655543 45556666666665542 2333333321 11222233355555555
Q ss_pred CCHHHHHHHHHHH
Q 012365 95 KDFDSAYSLLDDL 107 (465)
Q Consensus 95 g~~~~a~~~~~~m 107 (465)
+.++++.-++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555444
No 222
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.67 E-value=1.5 Score=39.30 Aligned_cols=290 Identities=13% Similarity=0.086 Sum_probs=170.8
Q ss_pred HHHHHHHHHhc--ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHhhCCCCCCHHH--HHH
Q 012365 13 SYKKLITYSCD--LLKVHVALDVVEQMVQGELVPSTETINSILHAC--EESYEFNLVRRIYPMICHHNLKPNSET--FRS 86 (465)
Q Consensus 13 ~y~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ 86 (465)
-|.+|-.++.- .|+-..|.++-.+-... +..|......|+.+- .-.|+++.|.+-|+.|... |.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 35555555544 57777887777665432 334666666666653 3469999999999999863 22221 222
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHH--HHHHHHHhh--
Q 012365 87 MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN-VKPDSQ--TFSYLIHNC-- 161 (465)
Q Consensus 87 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~--~~~~ll~~~-- 161 (465)
|.-.--+.|+.+.|.+.-++.-..- +.=...+...+...+..|+|+.|+++++.-++.. +.++.. .-..++.+-
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 3333356788888888877765442 3345778999999999999999999999877543 445542 233444431
Q ss_pred --CChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHcCCChhHHH
Q 012365 162 --SNEEDIIKYYEQLKSAGGQITKYVF-MALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAI 237 (465)
Q Consensus 162 --~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 237 (465)
.+.+.....-.......+.|+..-- .....++.+.|++.++-.+++.+ ...+.|.. + .+-.+.+.|+ .++
T Consensus 239 s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gd--ta~ 312 (531)
T COG3898 239 SLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGD--TAL 312 (531)
T ss_pred HHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCC--cHH
Confidence 1122111111122223445554322 23357889999999999999873 34444432 2 2333445554 444
Q ss_pred HHHHHHHHc-CCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCccchhhHhhH-hhhcCChhHHHHHHHHHHH
Q 012365 238 IVYEEIKEA-GCNLE-PRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILH-CVRFKQLSSATDLLKQLKD 313 (465)
Q Consensus 238 ~~~~~m~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~ 313 (465)
+-++....- ..+|+ ..+...+.++-...|++..|..--+...+....-..|..+... -...|+-.++...+.+..+
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 433333221 23344 4556677788888888888777666665544433333333332 2345777777777666655
No 223
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.57 E-value=2.5 Score=41.04 Aligned_cols=202 Identities=12% Similarity=0.187 Sum_probs=109.4
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 012365 78 KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEM-NLMP--------TASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148 (465)
Q Consensus 78 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 148 (465)
.|-+..|..+.......-.++.|+..|-+.... |++. +...-.+=+.+| -|++++|.++|-+|-+.++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 477788888877777777777777777655432 2111 111111222222 4788888888887765432
Q ss_pred CCHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHH
Q 012365 149 PDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQIT----KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALV 224 (465)
Q Consensus 149 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 224 (465)
.+....+.|+...+++.++.-|...| ...++.+.+.+.....|++|.+.+..- . . ....+
T Consensus 766 --------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~--~--~----~e~~~ 829 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC--G--D----TENQI 829 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--c--c----hHhHH
Confidence 23344566777777776665443333 246677777777777788887777521 1 1 12245
Q ss_pred HHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHH
Q 012365 225 SALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSA 304 (465)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 304 (465)
.++.+..++++...+...+.+ +....-.+.+.+.+.|.-++|.+.+-.-... -..+..|...+++.+|
T Consensus 830 ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p-------kaAv~tCv~LnQW~~a 897 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRSLP-------KAAVHTCVELNQWGEA 897 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhccCc-------HHHHHHHHHHHHHHHH
Confidence 555555555555544444322 3333445555566666655555544322110 1223344455555555
Q ss_pred HHHHHH
Q 012365 305 TDLLKQ 310 (465)
Q Consensus 305 ~~~~~~ 310 (465)
.++-++
T Consensus 898 velaq~ 903 (1189)
T KOG2041|consen 898 VELAQR 903 (1189)
T ss_pred HHHHHh
Confidence 555443
No 224
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.56 E-value=0.55 Score=42.78 Aligned_cols=144 Identities=8% Similarity=0.067 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 012365 12 ASYKKLITYSCDLLKVHVALDVVEQMVQGE-LVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL 90 (465)
Q Consensus 12 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 90 (465)
.+|...|.+..+..-++.|..+|-++.+.| +.++...+++.+.-++ .|+...|..+|+.-...- +-++.--+-.+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-PDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 455566666666666777777777777766 5566667777666553 457777777777655442 2223333445566
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 012365 91 NVKIKDFDSAYSLLDDLKEMNLMPT--ASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN 160 (465)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 160 (465)
+.+-++-+.|..+|+.-..+ +..+ ...|..+|.--..-|+...+..+=+.|.+. .|...+...+...
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sr 544 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSR 544 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHH
Confidence 66677777777777743321 1112 446777777777777777776666666542 3444444444443
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.54 E-value=0.58 Score=43.12 Aligned_cols=64 Identities=11% Similarity=-0.059 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 012365 10 SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPST----ETINSILHACEESYEFNLVRRIYPMICHH 75 (465)
Q Consensus 10 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 75 (465)
+...|+.+-.+|.+.|++++|+..|++..+.. |+. .+|..+..+|...|+.++|.+.++...+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45667777777777777777777777776643 332 34666777777777777777777777664
No 226
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.52 E-value=0.98 Score=44.55 Aligned_cols=143 Identities=12% Similarity=0.182 Sum_probs=89.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHH
Q 012365 190 INAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN 269 (465)
Q Consensus 190 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 269 (465)
.+-+.+.|++++|...+-+. .+.-.+ ..+|.-|....+...-..+++.+.+.|+. +...-..|+.+|.+.++.+
T Consensus 375 gd~Ly~Kgdf~~A~~qYI~t-I~~le~----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 375 GDYLYGKGDFDEATDQYIET-IGFLEP----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHHHHhcCCHHHHHHHHHHH-cccCCh----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchH
Confidence 45567889999999888751 222222 22566677777777888888999999875 5556668999999999999
Q ss_pred HHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHH
Q 012365 270 RLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQ 349 (465)
Q Consensus 270 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~ 349 (465)
+..++.+... .|.+.-..-..+..+.+.+-.++|..+-.+... .......++. . .+++++|++.+.
T Consensus 449 kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~----he~vl~ille----~-----~~ny~eAl~yi~ 514 (933)
T KOG2114|consen 449 KLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATKFKK----HEWVLDILLE----D-----LHNYEEALRYIS 514 (933)
T ss_pred HHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc----CHHHHHHHHH----H-----hcCHHHHHHHHh
Confidence 9888887766 454432233344444455555555544333221 1222222222 2 377888877777
Q ss_pred HHH
Q 012365 350 FIK 352 (465)
Q Consensus 350 ~m~ 352 (465)
.+.
T Consensus 515 slp 517 (933)
T KOG2114|consen 515 SLP 517 (933)
T ss_pred cCC
Confidence 655
No 227
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.52 E-value=0.7 Score=34.45 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=51.4
Q ss_pred CcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCC
Q 012365 359 PSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDP 427 (465)
Q Consensus 359 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 427 (465)
.+...++..+.....+|+-++-.+++.++.+. -.+++....-+..+|.+.|+..++.+++.+.-++|.
T Consensus 84 ~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 84 KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp ---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 45566788889999999999999999999874 488999999999999999999999999998887775
No 228
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=1.8 Score=39.11 Aligned_cols=89 Identities=12% Similarity=0.010 Sum_probs=61.1
Q ss_pred HHHHcCCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCC-ccchhhHhhHhhhcCC
Q 012365 225 SALASHGRTSDAIIVYEEIKEA---GCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW-MDGCCRLILHCVRFKQ 300 (465)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 300 (465)
.-..++|.+..|.+.+.+.+.. ++.|+...|........+.|+.++|+.-.+.....+.. +.++..-..++.-.+.
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK 336 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 3456788888899888887754 35556666777777778888888888877776654322 2334444455566777
Q ss_pred hhHHHHHHHHHHH
Q 012365 301 LSSATDLLKQLKD 313 (465)
Q Consensus 301 ~~~a~~~~~~~~~ 313 (465)
+++|.+-|+...+
T Consensus 337 ~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888777666
No 229
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.46 E-value=0.022 Score=33.58 Aligned_cols=27 Identities=11% Similarity=-0.101 Sum_probs=13.2
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHc
Q 012365 364 LDFLLGACVNARDLKRAHLIWKEYENA 390 (465)
Q Consensus 364 ~~~ll~~~~~~g~~~~A~~~~~~m~~~ 390 (465)
+..+..+|...|++++|.++|+++.+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444455555555555555555544
No 230
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.44 E-value=0.55 Score=44.72 Aligned_cols=119 Identities=13% Similarity=0.165 Sum_probs=76.1
Q ss_pred cCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhh-cCCC-CcHHHHHHHHHHhHhhh
Q 012365 298 FKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDE-LGLP-PSRKCLDFLLGACVNAR 375 (465)
Q Consensus 298 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~-~~~~-p~~~~~~~ll~~~~~~g 375 (465)
....+.|.+++..+... -|+..-|...-..+... .|++++|++.|++.... ...+ .....+--+...+.-.+
T Consensus 246 ~~~~~~a~~lL~~~~~~-yP~s~lfl~~~gR~~~~-----~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~ 319 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR-YPNSALFLFFEGRLERL-----KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQH 319 (468)
T ss_pred CCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHH-----hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHc
Confidence 45667777888777763 24444444433333333 58888888888865511 1111 12334455677788889
Q ss_pred hhhHHHHHHHHHHHcCCCCChhHHHHHHH-HHHhcCCh-------hhHHHHHhccC
Q 012365 376 DLKRAHLIWKEYENAGLPYNVLSYLWMYK-AFLASGNR-------KSASKLLSKMP 423 (465)
Q Consensus 376 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~-~~~~~g~~-------~~A~~~~~~m~ 423 (465)
++++|.+.|..+.+.. ..+..+|.-+.. ++...|+. ++|.++++++.
T Consensus 320 ~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 320 DWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred hHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 9999999999998753 444555554444 45567877 88888888765
No 231
>PRK15331 chaperone protein SicA; Provisional
Probab=95.42 E-value=0.54 Score=36.79 Aligned_cols=91 Identities=8% Similarity=0.027 Sum_probs=72.0
Q ss_pred HHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCC
Q 012365 17 LITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKD 96 (465)
Q Consensus 17 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 96 (465)
.-..+-..|++++|..+|..+.-.++. +..-+..|..++-..+++++|...|......+ .-|+..+-....++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCC
Confidence 344455789999999999999876544 55556666667777899999999999887665 3455556667788999999
Q ss_pred HHHHHHHHHHHHH
Q 012365 97 FDSAYSLLDDLKE 109 (465)
Q Consensus 97 ~~~a~~~~~~m~~ 109 (465)
.+.|...|+....
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998887
No 232
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.41 E-value=1.9 Score=39.01 Aligned_cols=86 Identities=12% Similarity=0.068 Sum_probs=58.2
Q ss_pred CchhhhHHhHHHHHh---hcCC-CCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHH----cC-CCCChhHHHHHHHHHHhc
Q 012365 339 PDVQIGLDLLQFIKD---ELGL-PPSRKCLDFLLGACVNARDLKRAHLIWKEYEN----AG-LPYNVLSYLWMYKAFLAS 409 (465)
Q Consensus 339 ~~~~~A~~~~~~m~~---~~~~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~~~~~l~~~~~~~ 409 (465)
|+++.|.+.|+.... +.|- .-...+..+|...|.-..++.+|..++.+=.. .+ .--...++-+|..+|...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 777777777765441 1121 12344566788888888899999888765432 11 123456788899999999
Q ss_pred CChhhHHHHHhccCC
Q 012365 410 GNRKSASKLLSKMPK 424 (465)
Q Consensus 410 g~~~~A~~~~~~m~~ 424 (465)
|..++|..+.+.-++
T Consensus 329 g~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 329 GEHRKALYFAELHLR 343 (639)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999988876553
No 233
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.8 Score=41.24 Aligned_cols=122 Identities=7% Similarity=-0.022 Sum_probs=65.2
Q ss_pred HHhcccCHHHHHHHHHHHHhC-----CCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 012365 20 YSCDLLKVHVALDVVEQMVQG-----ELVP---------STETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85 (465)
Q Consensus 20 ~~~~~g~~~~A~~~~~~m~~~-----~~~p---------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 85 (465)
.|.+.|++..|...|++.... +..+ -...+..+..++.+.+++..|.+.-+..+..+ ++|+...-
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALy 295 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALY 295 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHH
Confidence 566778888888887775431 1111 11234455555666666666666666666655 45555555
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHH
Q 012365 86 SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ-GALMVLKEME 143 (465)
Q Consensus 86 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m~ 143 (465)
.-..++...|+++.|+..|+++.+.. |-|...-+-++....+..... ...++|..|.
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666666666666666666666542 223333333333333333222 2244555554
No 234
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.24 E-value=2 Score=37.84 Aligned_cols=222 Identities=9% Similarity=0.019 Sum_probs=117.6
Q ss_pred HhcCCHHHHHHHHHHhcC---CCCChHH------HHHHHHHHHHcCC-ChhHHHHHHHHHHHc--------CCCCCH---
Q 012365 194 TTCGEFEKARQVVLDAEI---PVKSRSE------VKSALVSALASHG-RTSDAIIVYEEIKEA--------GCNLEP--- 252 (465)
Q Consensus 194 ~~~g~~~~a~~~~~~~~~---~~~~~~~------~~~~l~~~~~~~g-~~~~a~~~~~~m~~~--------~~~p~~--- 252 (465)
.+.|+.+.|...+.+... ...|... .|+.=... ...+ +++.|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l-~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSL-LSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHH-HHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 466777888777766221 1111111 13333333 3444 777777666654332 223343
Q ss_pred --HHHHHHHHHHHccCcHH---HHHHHHHHHcCCC-CCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHH
Q 012365 253 --RAVIALIEHLNSEGELN---RLIQLLEEVHDPD-YWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHF 326 (465)
Q Consensus 253 --~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 326 (465)
.++..++.++...+..+ +|.++++.+.... -.+..+..-+..+.+.++.+++.+.+.+|.....-...++...+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 24556677777766554 4555666664433 33555555666666678888888888888875433444444444
Q ss_pred HHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHH-HHH-HHHH---HhHhh------hhhhHHHHHHHHHHH-cCCCC
Q 012365 327 SEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRK-CLD-FLLG---ACVNA------RDLKRAHLIWKEYEN-AGLPY 394 (465)
Q Consensus 327 ~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~-~~~-~ll~---~~~~~------g~~~~A~~~~~~m~~-~g~~p 394 (465)
..+..... .....|...+..+. ...+.|... ... .++. ..... +.++....+++.+.+ .+.+.
T Consensus 163 ~~i~~l~~----~~~~~a~~~ld~~l-~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~l 237 (278)
T PF08631_consen 163 HHIKQLAE----KSPELAAFCLDYLL-LNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQL 237 (278)
T ss_pred HHHHHHHh----hCcHHHHHHHHHHH-HHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCC
Confidence 43322211 33455666666666 555555443 111 1111 11221 124555555664443 23455
Q ss_pred ChhHHHHHHH-------HHHhcCChhhHHHHHhc
Q 012365 395 NVLSYLWMYK-------AFLASGNRKSASKLLSK 421 (465)
Q Consensus 395 ~~~~~~~l~~-------~~~~~g~~~~A~~~~~~ 421 (465)
+..+-.++.. .+.+.+++++|.++|+-
T Consensus 238 s~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 238 SAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 5554444433 35567899999998873
No 235
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.19 E-value=2.3 Score=38.29 Aligned_cols=67 Identities=16% Similarity=0.151 Sum_probs=48.9
Q ss_pred CCCCc-HHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-cCChhhHHHHHhccCC
Q 012365 356 GLPPS-RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLA-SGNRKSASKLLSKMPK 424 (465)
Q Consensus 356 ~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~ 424 (465)
..+|| ..+.-.+..+....|++..|+.--+...+ ..|....|..|.+.-.- .||-.++..++-+..+
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 45564 44555666777788888888877776666 47888888888876544 4899999998888764
No 236
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.03 E-value=1.3 Score=34.79 Aligned_cols=138 Identities=11% Similarity=0.060 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH-HHHHH
Q 012365 11 SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINS--ILHACEESYEFNLVRRIYPMICHHNLKPNSE-TFRSM 87 (465)
Q Consensus 11 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l 87 (465)
...|..-+. +.+.+..++|+.-|..+.+.|...-+ .+.. ........|+...|...|+++-...-.|-+. -...|
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~Yp-vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYP-VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcch-HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 344544444 35678899999999999998776221 2211 2223567899999999999987754333332 11111
Q ss_pred --HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 012365 88 --ISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD 150 (465)
Q Consensus 88 --i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 150 (465)
.-.+...|.++.+..-.+-+...+-+.....-..|.-+-.+.|++.+|.+.|..+......|.
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 123567789999998888887766555666677888888899999999999999886544443
No 237
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.77 E-value=0.092 Score=30.91 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHhccCCCCCChhHHHHH
Q 012365 397 LSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQA 435 (465)
Q Consensus 397 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l~~ 435 (465)
.++..+...|.+.|++++|.++++++++.+|........
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 467889999999999999999999999999976555443
No 238
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.75 E-value=0.51 Score=40.76 Aligned_cols=77 Identities=12% Similarity=0.211 Sum_probs=63.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 012365 83 TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQ-----ANVKPDSQTFSYL 157 (465)
Q Consensus 83 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~l 157 (465)
++..++..+...|+++.+...++++.... +-+...|..+|.+|.+.|+...|+..|+.+.. .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45667778888899999999999999876 67999999999999999999999999998864 5677776665544
Q ss_pred HHh
Q 012365 158 IHN 160 (465)
Q Consensus 158 l~~ 160 (465)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
No 239
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.71 E-value=2.9 Score=37.03 Aligned_cols=130 Identities=21% Similarity=0.323 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHCC---CCCCHHHHHHHHHhhCCh---
Q 012365 97 FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR--KK----DVQGALMVLKEMEQAN---VKPDSQTFSYLIHNCSNE--- 164 (465)
Q Consensus 97 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g----~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~~~--- 164 (465)
+++...+++.|.+.|+..+..+|-+....... .. ....|.++|+.|++.. -.++...+..++..-...
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~ 157 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHHH
Confidence 45566788889999888887766553333322 22 3457888889988754 235556666665542211
Q ss_pred --hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCC--hhHHHHHH
Q 012365 165 --EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGR--TSDAIIVY 240 (465)
Q Consensus 165 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~ 240 (465)
+.++.+++.+.+.|+. ..+.......++...-.... ..++.+++
T Consensus 158 l~~~~E~~Y~~L~~~~f~--------------------------------kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~ 205 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFK--------------------------------KGNDLQFLSHILALSEGDDQEKVARVIELY 205 (297)
T ss_pred HHHHHHHHHHHHHHhCCC--------------------------------CCcHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 1122333333333322 22222211222221111111 45778888
Q ss_pred HHHHHcCCCCCHHHHHHH
Q 012365 241 EEIKEAGCNLEPRAVIAL 258 (465)
Q Consensus 241 ~~m~~~~~~p~~~~~~~l 258 (465)
+.+.+.|+++....|..+
T Consensus 206 ~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 206 NALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHcCCccccccccHH
Confidence 999999988887777544
No 240
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.56 E-value=1.4 Score=32.89 Aligned_cols=123 Identities=16% Similarity=0.132 Sum_probs=75.7
Q ss_pred hcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-----------------CCCCHHHH
Q 012365 22 CDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHN-----------------LKPNSETF 84 (465)
Q Consensus 22 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------------~~~~~~~~ 84 (465)
.-.|.+++..++..+...+. +..-+|-++--....-+-+-..++++.+-+.- ...+....
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~v 89 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYV 89 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHH
Confidence 34688889999998887642 34445555544444444444444444433210 01244556
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 012365 85 RSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148 (465)
Q Consensus 85 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 148 (465)
+..++.+...|+-+.-.+++.++...+ .+++...-.+..+|.+.|+..++.+++.+.-+.|++
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 677788888888888888888887543 688888888999999999999999999999888863
No 241
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.55 E-value=0.63 Score=39.61 Aligned_cols=49 Identities=10% Similarity=0.042 Sum_probs=23.8
Q ss_pred cCcHHHHHHHHHHHcCCC----CCccchhhHhhHhhhcCChhHHHHHHHHHHH
Q 012365 265 EGELNRLIQLLEEVHDPD----YWMDGCCRLILHCVRFKQLSSATDLLKQLKD 313 (465)
Q Consensus 265 ~g~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 313 (465)
.|++..|...|....+.. ..++.++++...+...|++++|..+|..+.+
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k 206 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK 206 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 344555555444444322 2244455555555555555555555555544
No 242
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.50 E-value=4.2 Score=38.06 Aligned_cols=180 Identities=14% Similarity=0.105 Sum_probs=103.2
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCccchhh-HhhHhhhc
Q 012365 220 KSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCR-LILHCVRF 298 (465)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 298 (465)
..+++..+..+-...-+..+..+|..-| -+...|..++++|... ..+.-..+|+.+.+....-..... +...| ..
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~y-Ek 144 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKY-EK 144 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHH-HH
Confidence 4455556666555666666666666655 4555566666666555 444555555555544433222222 22223 33
Q ss_pred CChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhh
Q 012365 299 KQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLK 378 (465)
Q Consensus 299 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~ 378 (465)
.+...+..+|.++.....|.. .++-+.++...+..--..+.+..+.+...+....|..--...+.-+-.-|....+++
T Consensus 145 ik~sk~a~~f~Ka~yrfI~~~--q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~ 222 (711)
T COG1747 145 IKKSKAAEFFGKALYRFIPRR--QNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWT 222 (711)
T ss_pred hchhhHHHHHHHHHHHhcchh--hhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHH
Confidence 566666666666655433311 112222222222221136677777777777755666666667777777888889999
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 012365 379 RAHLIWKEYENAGLPYNVLSYLWMYKAF 406 (465)
Q Consensus 379 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 406 (465)
+|.+++..+.++. ..|.-.-..++.-+
T Consensus 223 eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 223 EAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred HHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 9999999888874 55666666666544
No 243
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.46 E-value=3.9 Score=37.57 Aligned_cols=144 Identities=10% Similarity=0.021 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHcCCC-CCccc--hhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHH
Q 012365 253 RAVIALIEHLNSEGELNRLIQLLEEVHDPD-YWMDG--CCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEI 329 (465)
Q Consensus 253 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 329 (465)
..|...+.+..+...++.|..+|-+..+.+ ..++. ++..+..+ ..|+..-|.++|+--....+....-.+-.+.-+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 345667777788888899999999998877 33443 34555554 678888888888865554433333333333333
Q ss_pred HHhhhcCCCCchhhhHHhHHHHHhhcCCCCc--HHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 012365 330 FCQIATTDPPDVQIGLDLLQFIKDELGLPPS--RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFL 407 (465)
Q Consensus 330 ~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 407 (465)
+.. ++-+.|..+|+.... .+..+ ...|..+|.--..-|+...+..+-+.|.+. -|-..+......-|.
T Consensus 477 i~i------nde~naraLFetsv~--r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 477 IRI------NDEENARALFETSVE--RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHh------CcHHHHHHHHHHhHH--HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 333 778888888886551 22222 457888888778888888888887887774 444444444444443
No 244
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.45 E-value=1.5 Score=32.68 Aligned_cols=91 Identities=10% Similarity=-0.065 Sum_probs=52.8
Q ss_pred HHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH---HHHHHHHHhccCC
Q 012365 20 YSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSET---FRSMISLNVKIKD 96 (465)
Q Consensus 20 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~ 96 (465)
+++..|+.+.|++.|.+....- +-....||.-..++.-.|+.++|++=+++..+..-..+... |..-...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4455677777777777666542 23566677777777667777777766666665322223222 2222334555566
Q ss_pred HHHHHHHHHHHHHcC
Q 012365 97 FDSAYSLLDDLKEMN 111 (465)
Q Consensus 97 ~~~a~~~~~~m~~~~ 111 (465)
.+.|..=|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666666655554
No 245
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=1 Score=40.63 Aligned_cols=76 Identities=24% Similarity=0.183 Sum_probs=60.3
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCCh---hHHHHHHHh
Q 012365 362 KCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHV---RFVIQACKQ 438 (465)
Q Consensus 362 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~l~~~~~ 438 (465)
.++..+.-+|.+.+++..|++.-++.+..+ ++|+..+-.=..+|...|+++.|+..|+++++.+|.+ ..-|..|..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 356667778888899999999988888874 7888888888889999999999999999999888865 333444444
No 246
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.35 E-value=3.5 Score=36.51 Aligned_cols=137 Identities=13% Similarity=0.222 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--cC----cHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHH
Q 012365 233 TSDAIIVYEEIKEAGCNLEPRAVIALIEHLNS--EG----ELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATD 306 (465)
Q Consensus 233 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~g----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 306 (465)
+++.+.+++.|.+.|++-+..+|.+....... .. ...++..+++.|++.-+...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs------------------- 138 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTS------------------- 138 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccC-------------------
Confidence 34466788888888887777666543332222 22 233556666666554433221
Q ss_pred HHHHHHHcccchhHHHHHHHHHHHHhhhcCC-CCchhhhHHhHHHHHhhcCCCCcH--HHHHHHHHHhHhh--hhhhHHH
Q 012365 307 LLKQLKDKFKDDEMAMEYHFSEIFCQIATTD-PPDVQIGLDLLQFIKDELGLPPSR--KCLDFLLGACVNA--RDLKRAH 381 (465)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~A~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~--g~~~~A~ 381 (465)
++..++..++.. ...+ ..-.+....+|+.+. ..|+..+. ...+.++..+... ....++.
T Consensus 139 ----------~~D~~~a~lLA~-----~~~~~e~l~~~~E~~Y~~L~-~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~ 202 (297)
T PF13170_consen 139 ----------PEDYPFAALLAM-----TSEDVEELAERMEQCYQKLA-DAGFKKGNDLQFLSHILALSEGDDQEKVARVI 202 (297)
T ss_pred ----------ccchhHHHHHhc-----ccccHHHHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHhccccchHHHHHHH
Confidence 222222222211 0000 011233444555555 45555432 2333333332221 1245677
Q ss_pred HHHHHHHHcCCCCChhHHHHHHH
Q 012365 382 LIWKEYENAGLPYNVLSYLWMYK 404 (465)
Q Consensus 382 ~~~~~m~~~g~~p~~~~~~~l~~ 404 (465)
++++.+.+.|+++....|..+.-
T Consensus 203 ~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 203 ELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHcCCccccccccHHHH
Confidence 77777777777777776665554
No 247
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.22 E-value=0.57 Score=39.84 Aligned_cols=94 Identities=17% Similarity=0.144 Sum_probs=52.2
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCC----CCccchhhHhh
Q 012365 220 KSALVSALASHGRTSDAIIVYEEIKEAGC--NLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPD----YWMDGCCRLIL 293 (465)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~~ 293 (465)
|+.-+..| ..|++..|...|....+... .-.+..+-.|.+++...|+++.|-.+|..+.+.- -.|++...+..
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 44444433 34556666666666665531 1113334456666666666666666665554321 22455566666
Q ss_pred HhhhcCChhHHHHHHHHHHHc
Q 012365 294 HCVRFKQLSSATDLLKQLKDK 314 (465)
Q Consensus 294 ~~~~~~~~~~a~~~~~~~~~~ 314 (465)
...+.|+.++|...|+++.+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 666677777777777776663
No 248
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.20 E-value=0.062 Score=29.53 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=25.4
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChhhHH
Q 012365 384 WKEYENAGLPYNVLSYLWMYKAFLASGNRKSAS 416 (465)
Q Consensus 384 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 416 (465)
|++.++. -|.|+.+|+.+...|...|++++|+
T Consensus 2 y~kAie~-~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIEL-NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHH-CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4555665 3778889999999999999999886
No 249
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=1.6 Score=37.66 Aligned_cols=121 Identities=11% Similarity=0.001 Sum_probs=72.4
Q ss_pred HhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 012365 21 SCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSA 100 (465)
Q Consensus 21 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 100 (465)
....|++.+|..+|....+.... +...-..+..++...|+.+.|..++..+...--.........-|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 44567777777777777665433 34455566677777777777777777765432122222223345555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012365 101 YSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQ 144 (465)
Q Consensus 101 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 144 (465)
..+-.+.-.. +-|...-..+...+...|+.+.|++.+-.+..
T Consensus 223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555442 22566666677777777777777776666554
No 250
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=94.17 E-value=3.2 Score=35.89 Aligned_cols=76 Identities=13% Similarity=0.274 Sum_probs=63.2
Q ss_pred HhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCChhhHHHHHhc
Q 012365 346 DLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENA-GLPYNVLSYLWMYKAFLASGNRKSASKLLSK 421 (465)
Q Consensus 346 ~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 421 (465)
++.+-+....+..++..+...++..++..+++.+-.++|+.-... +..-|...|..+++.....|+..-..+++++
T Consensus 187 EvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 187 EVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 333444435667888999999999999999999999999998865 6677889999999999999998877777765
No 251
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.01 E-value=2.5 Score=33.52 Aligned_cols=132 Identities=15% Similarity=0.195 Sum_probs=71.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCCh-hHHHHHHHHH-HHcCC
Q 012365 102 SLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNE-EDIIKYYEQL-KSAGG 179 (465)
Q Consensus 102 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-~~~~~~~~~~-~~~~~ 179 (465)
+.++.+.+.+++|+...|..+++.+.+.|++.. +..+...++-||.......+-..+.. ..+.++--.| ++.+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-
Confidence 445556667778888888888888888887543 44555567777766665555443322 2222221122 2212
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 012365 180 QITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245 (465)
Q Consensus 180 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 245 (465)
..+..++..+...|++-+|.++.+........+ ...++.+-.+.++...-..+++-..+
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~---~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVP---ARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCC---HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 124455566667777777777776421111111 23455555555555554445444444
No 252
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.99 E-value=2.6 Score=39.70 Aligned_cols=68 Identities=19% Similarity=0.137 Sum_probs=36.6
Q ss_pred CchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHH
Q 012365 339 PDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKL 418 (465)
Q Consensus 339 ~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 418 (465)
|+++-|.+.|.+.. -|..|+-.|...|+.+.-.++.+.....|- ++....++.-.|+.++..++
T Consensus 361 g~~~lAe~c~~k~~----------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~l 424 (443)
T PF04053_consen 361 GNIELAEECYQKAK----------DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDL 424 (443)
T ss_dssp TBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHH
T ss_pred CCHHHHHHHHHhhc----------CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHH
Confidence 66666666666555 344555556666666666666666555541 34444444455666666665
Q ss_pred Hhcc
Q 012365 419 LSKM 422 (465)
Q Consensus 419 ~~~m 422 (465)
+.+.
T Consensus 425 L~~~ 428 (443)
T PF04053_consen 425 LIET 428 (443)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 5543
No 253
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.96 E-value=0.99 Score=39.06 Aligned_cols=81 Identities=7% Similarity=0.047 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 012365 47 ETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKE-----MNLMPTASMYNA 121 (465)
Q Consensus 47 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~~ 121 (465)
.++..++..+...|+.+.+...++.+.... +-+...|..+|.+|.+.|+...|...|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 467778888888888999999988888875 66888899999999999999999888887754 588888888877
Q ss_pred HHHHHHh
Q 012365 122 IMAGYFR 128 (465)
Q Consensus 122 li~~~~~ 128 (465)
......+
T Consensus 233 y~~~~~~ 239 (280)
T COG3629 233 YEEILRQ 239 (280)
T ss_pred HHHHhcc
Confidence 7777433
No 254
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.88 E-value=1.6 Score=33.41 Aligned_cols=77 Identities=13% Similarity=0.081 Sum_probs=49.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhcCCCCChH---HHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 012365 190 INAYTTCGEFEKARQVVLDAEIPVKSRS---EVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266 (465)
Q Consensus 190 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 266 (465)
.....+.|++++|.+.|+.+....+... ...-.++.+|...+++++|...+++.++....-...-|...+.+++.-.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 3445677888888888887543322211 1255678888888888888888888887663323344555566555433
No 255
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.79 E-value=5 Score=37.86 Aligned_cols=135 Identities=17% Similarity=0.059 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012365 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262 (465)
Q Consensus 183 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 262 (465)
....+.++..+-+.|-.+.|+++-++ + ..-.....+.|+.+.|.++.++ ..++..|..|-...
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D------~-----~~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTD------P-----DHRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-------H-----HHHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCC------h-----HHHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHH
Confidence 33455555556666666666555421 0 1112233445666666554332 24788999999999
Q ss_pred HccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchh
Q 012365 263 NSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQ 342 (465)
Q Consensus 263 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 342 (465)
...|+++-|.+.+++..+ +..+...|...|+.+...++.+.....+..+......++ . |+++
T Consensus 358 L~~g~~~lAe~c~~k~~d-------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~-----l------gd~~ 419 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKD-------FSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALL-----L------GDVE 419 (443)
T ss_dssp HHTTBHHHHHHHHHHCT--------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHH-----H------T-HH
T ss_pred HHcCCHHHHHHHHHhhcC-------ccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHH-----c------CCHH
Confidence 999999999999998764 456666777888887777777666654333333333322 2 7888
Q ss_pred hhHHhHHHHH
Q 012365 343 IGLDLLQFIK 352 (465)
Q Consensus 343 ~A~~~~~~m~ 352 (465)
+..+++.+..
T Consensus 420 ~cv~lL~~~~ 429 (443)
T PF04053_consen 420 ECVDLLIETG 429 (443)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 8777776543
No 256
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.70 E-value=3.7 Score=34.47 Aligned_cols=210 Identities=14% Similarity=0.192 Sum_probs=104.9
Q ss_pred CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH
Q 012365 42 LVPST----ETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTAS 117 (465)
Q Consensus 42 ~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 117 (465)
.+||. ..|.....+|...+++++|...+....+. ...+...|. ....++.|.-+.+++... +--+.
T Consensus 23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvd 92 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVD 92 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHH
Confidence 45554 34555566777788888888877766532 122333322 223345555555555542 12234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHH--HHHHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012365 118 MYNAIMAGYFRKKDVQGALMVLKEMEQ--ANVKPDSQ--TFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAY 193 (465)
Q Consensus 118 ~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~p~~~--~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 193 (465)
.|+.-...|...|.++.|-..+++.-+ .++.|+.. .|..-+...-..+.....++ .+..+-+.+
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~e------------l~gk~sr~l 160 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFE------------LYGKCSRVL 160 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHH------------HHHHhhhHh
Confidence 456666667777777766666655432 23555532 22222222222222222222 233344556
Q ss_pred HhcCCHHHHHHHHHHh-----cCCCCC-hHHHHHHHHHHHHcCCChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHc
Q 012365 194 TTCGEFEKARQVVLDA-----EIPVKS-RSEVKSALVSALASHGRTSDAIIVYEEIKEAG---CNLEPRAVIALIEHLNS 264 (465)
Q Consensus 194 ~~~g~~~~a~~~~~~~-----~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~~ 264 (465)
.+...+++|-..|.+. ....-+ ....|...|-.+.-..++..|.+.++.-.+.+ -.-+..+...|+.+| .
T Consensus 161 Vrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d 239 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-D 239 (308)
T ss_pred hhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-c
Confidence 6666776666655431 111111 11124445555566667788888877754432 122345566666665 3
Q ss_pred cCcHHHHHHH
Q 012365 265 EGELNRLIQL 274 (465)
Q Consensus 265 ~g~~~~a~~~ 274 (465)
.|+.+++.++
T Consensus 240 ~gD~E~~~kv 249 (308)
T KOG1585|consen 240 EGDIEEIKKV 249 (308)
T ss_pred cCCHHHHHHH
Confidence 4555554443
No 257
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.57 E-value=0.93 Score=36.59 Aligned_cols=60 Identities=7% Similarity=0.129 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHH
Q 012365 48 TINSILHACEESYEFNLVRRIYPMICHHNLKPN--SETFRSMISLNVKIKDFDSAYSLLDDL 107 (465)
Q Consensus 48 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m 107 (465)
.+..+...|.+.|+.+.|.+.|..+.+....+. ...+-.+|......+++..+.....+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344444555555555555555555544332222 223444455555555555555444443
No 258
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.57 E-value=0.39 Score=36.71 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=23.7
Q ss_pred CchhhhHHhHHHHHhhcCCCCcH---HHHHHHHHHhHhhhhhhHHHHHHHHHHHc
Q 012365 339 PDVQIGLDLLQFIKDELGLPPSR---KCLDFLLGACVNARDLKRAHLIWKEYENA 390 (465)
Q Consensus 339 ~~~~~A~~~~~~m~~~~~~~p~~---~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 390 (465)
++++++..++..|. -+.|+. .++...+ +...|++++|.++|+++.+.
T Consensus 24 ~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 24 ADPYDAQAMLDALR---VLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred CCHHHHHHHHHHHH---HhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 55555555555555 333332 2332222 34556666666666665553
No 259
>PRK11906 transcriptional regulator; Provisional
Probab=93.50 E-value=3.7 Score=38.17 Aligned_cols=99 Identities=16% Similarity=0.222 Sum_probs=74.6
Q ss_pred CCchhhhHHhHHHHHhhcCCCC-cHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHH
Q 012365 338 PPDVQIGLDLLQFIKDELGLPP-SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSAS 416 (465)
Q Consensus 338 ~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 416 (465)
.....+|.++-+... .+.| |+.....+..+....|+++.|...|++....+ |....+|......+.-.|+.++|.
T Consensus 317 ~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~ 392 (458)
T PRK11906 317 ELAAQKALELLDYVS---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEAR 392 (458)
T ss_pred hHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 355666777777777 4444 66666667777777888999999999999873 555567777777788899999999
Q ss_pred HHHhccCCCCCCh--hHHHHHHHhhc
Q 012365 417 KLLSKMPKDDPHV--RFVIQACKQTY 440 (465)
Q Consensus 417 ~~~~~m~~~~~~~--~~~l~~~~~~~ 440 (465)
+.+++.++.+|.- -+++.-|...|
T Consensus 393 ~~i~~alrLsP~~~~~~~~~~~~~~~ 418 (458)
T PRK11906 393 ICIDKSLQLEPRRRKAVVIKECVDMY 418 (458)
T ss_pred HHHHHHhccCchhhHHHHHHHHHHHH
Confidence 9999999988842 55666666443
No 260
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.31 E-value=0.13 Score=28.72 Aligned_cols=26 Identities=8% Similarity=0.091 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhccC
Q 012365 398 SYLWMYKAFLASGNRKSASKLLSKMP 423 (465)
Q Consensus 398 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 423 (465)
+|..|...|.+.|++++|.+++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47788899999999999999998844
No 261
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.24 E-value=2.7 Score=31.42 Aligned_cols=91 Identities=12% Similarity=-0.018 Sum_probs=66.6
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHhcCC
Q 012365 55 ACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNA---IMAGYFRKKD 131 (465)
Q Consensus 55 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~---li~~~~~~g~ 131 (465)
+++..|+++.|++.|.+....- +.....||.-..++--.|+.++|.+=+++..+..-..+.....+ -...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4677899999999999887754 56788899999999989999999888887765432333332222 2345667788
Q ss_pred HHHHHHHHHHHHHCC
Q 012365 132 VQGALMVLKEMEQAN 146 (465)
Q Consensus 132 ~~~a~~~~~~m~~~~ 146 (465)
.+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888888777665
No 262
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.02 E-value=4.6 Score=33.56 Aligned_cols=174 Identities=15% Similarity=0.128 Sum_probs=96.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcC--CCCC-hHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012365 186 FMALINAYTTCGEFEKARQVVLDAEI--PVKS-RSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262 (465)
Q Consensus 186 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 262 (465)
.-.....+...|++++|.+.|+.+.. +..+ .....-.++.++.+.|+++.|...++++.+.-..-....+...+.+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 33445567789999999999998432 2222 22235678889999999999999999988875222222233333333
Q ss_pred Hcc-------------CcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHH
Q 012365 263 NSE-------------GELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEI 329 (465)
Q Consensus 263 ~~~-------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 329 (465)
+.. +...+|...|+.+. .-|-......+|...+..+... .......+..+
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li-------------~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~ 150 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEFEELI-------------KRYPNSEYAEEAKKRLAELRNR----LAEHELYIARF 150 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHHHH-------------HH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHHHHHHH-------------HHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 221 22234455555444 3333555666666666655542 11111112222
Q ss_pred HHhhhcCCCCchhhhHHhHHHHHhhcCCCC-cHHHHHHHHHHhHhhhhhhHHH
Q 012365 330 FCQIATTDPPDVQIGLDLLQFIKDELGLPP-SRKCLDFLLGACVNARDLKRAH 381 (465)
Q Consensus 330 ~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~ 381 (465)
+.. .|.+..|..-++.+.+...-.| .......++.++.+.|..+.|.
T Consensus 151 Y~~-----~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 151 YYK-----RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHC-----TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHH-----cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 222 4888889988888883333222 2235566778888888877554
No 263
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.92 E-value=4.8 Score=37.67 Aligned_cols=59 Identities=17% Similarity=0.155 Sum_probs=44.6
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHcCCCC--ChhHHHHHHHHHHhcCChhhHHHHHhccCC
Q 012365 365 DFLLGACVNARDLKRAHLIWKEYENAGLPY--NVLSYLWMYKAFLASGNRKSASKLLSKMPK 424 (465)
Q Consensus 365 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 424 (465)
..+..++.+.|+.++|.+.+++|.+. .|+ +......|+.+|...+.+.++..++.+--+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke-~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKE-FPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhh-CCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 44666677888888888888888764 233 344777888888888888888888888654
No 264
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.90 E-value=5.3 Score=36.50 Aligned_cols=200 Identities=14% Similarity=0.047 Sum_probs=107.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcC---CC-CCHHHHHHHHHHHHc
Q 012365 189 LINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG---CN-LEPRAVIALIEHLNS 264 (465)
Q Consensus 189 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---~~-p~~~~~~~ll~~~~~ 264 (465)
...+..+.|+|+...+.......... ....+.++... ..++++++...++.....- +. .....|......+.+
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~~~-~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~ 80 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNEDSP-EYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK 80 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCCCh-hHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 35678899999997777664322112 22224433333 7888998888887766531 10 112223333333333
Q ss_pred cCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhh
Q 012365 265 EGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIG 344 (465)
Q Consensus 265 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A 344 (465)
...+.+..++.+-....... ........+.++.=.....++...|..++.-
T Consensus 81 lq~L~Elee~~~~~~~~~~~-------------~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~---------------- 131 (352)
T PF02259_consen 81 LQQLVELEEIIELKSNLSQN-------------PQDLKSLLKRWRSRLPNMQDDFSVWEPILSL---------------- 131 (352)
T ss_pred HhHHHHHHHHHHHHHhhccc-------------HHHHHHHHHHHHHHHHHhccchHHHHHHHHH----------------
Confidence 33333333333322111000 1112222222322222123333344333321
Q ss_pred HHhHHHHHhh--cCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCC---ChhHHHHHHHHHHhcCChhhHHHHH
Q 012365 345 LDLLQFIKDE--LGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPY---NVLSYLWMYKAFLASGNRKSASKLL 419 (465)
Q Consensus 345 ~~~~~~m~~~--~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~ 419 (465)
-..+. . ........+|..+...+.+.|.++.|...+..+.+.+..+ ++.....-++.+...|+..+|...+
T Consensus 132 ---R~~~l-~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L 207 (352)
T PF02259_consen 132 ---RRLVL-SLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKL 207 (352)
T ss_pred ---HHHHH-hcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHH
Confidence 11111 0 0133455688889999999999999999999998754222 4455666677888999999999999
Q ss_pred hccCC
Q 012365 420 SKMPK 424 (465)
Q Consensus 420 ~~m~~ 424 (465)
++..+
T Consensus 208 ~~~~~ 212 (352)
T PF02259_consen 208 RELLK 212 (352)
T ss_pred HHHHH
Confidence 87766
No 265
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.75 E-value=0.091 Score=28.73 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhccCCCC
Q 012365 398 SYLWMYKAFLASGNRKSASKLLSKMPKDD 426 (465)
Q Consensus 398 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 426 (465)
+|..+...|...|++++|...+++.++.+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 34444444555555555555554444433
No 266
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.74 E-value=3.3 Score=35.84 Aligned_cols=116 Identities=9% Similarity=0.129 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh-c-CCHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHhccCCHHHHH
Q 012365 26 KVHVALDVVEQMVQ-GELVPSTETINSILHACEE-S-YEFNLVRRIYPMICH-HNLKPNSETFRSMISLNVKIKDFDSAY 101 (465)
Q Consensus 26 ~~~~A~~~~~~m~~-~~~~p~~~~~~~ll~~~~~-~-~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~ 101 (465)
-+.+|+.+|+...- ..+--|..+...+++.... . .....-.++.+-+.. .+-.++..+...+|..+++.+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34556666653211 2344567777777777665 2 223333444444443 234677777778888888888888888
Q ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012365 102 SLLDDLKEM-NLMPTASMYNAIMAGYFRKKDVQGALMVLKE 141 (465)
Q Consensus 102 ~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 141 (465)
++++..... +...|...|..+|+.-.+.|+..-..++.++
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 888776544 4455777788888888888887665555543
No 267
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.73 E-value=4.1 Score=32.28 Aligned_cols=103 Identities=16% Similarity=0.236 Sum_probs=62.8
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 012365 31 LDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEM 110 (465)
Q Consensus 31 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 110 (465)
++.++.+.+.+++|+...+..++..+.+.|.+....+++ +.++-+|.......+-.+.. ....+.++=-+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 455556667788888888888888888888866554443 55555554443333322222 223344443333321
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012365 111 NLMPTASMYNAIMAGYFRKKDVQGALMVLKEME 143 (465)
Q Consensus 111 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 143 (465)
=...+..++..+...|++-+|+++.+...
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~ 116 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYH 116 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 01146677788888888888888887753
No 268
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.56 E-value=15 Score=38.38 Aligned_cols=84 Identities=13% Similarity=0.137 Sum_probs=39.2
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCccc-hhhHhhHhhhc
Q 012365 220 KSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDG-CCRLILHCVRF 298 (465)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 298 (465)
|.+....+.....+++|.-.|...-+. .-.+.+|..+|+|.+|+.+..++....-..-. -..++.-+...
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHc
Confidence 444455555555566555555443221 13355566666666666666655432111111 12233334445
Q ss_pred CChhHHHHHHHHHH
Q 012365 299 KQLSSATDLLKQLK 312 (465)
Q Consensus 299 ~~~~~a~~~~~~~~ 312 (465)
++.-+|-++..+..
T Consensus 1013 ~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYL 1026 (1265)
T ss_pred ccchhHHHHHHHHh
Confidence 55555555544443
No 269
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.43 E-value=5.9 Score=33.33 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=25.6
Q ss_pred HhHhhhhhhHHHHHHHHHHHcCC---CCChhHHHHHHHHHHhcCChhhHHHHHh
Q 012365 370 ACVNARDLKRAHLIWKEYENAGL---PYNVLSYLWMYKAFLASGNRKSASKLLS 420 (465)
Q Consensus 370 ~~~~~g~~~~A~~~~~~m~~~g~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 420 (465)
.+.-..|+..|...+++--+.+- +-+..+...|+.+| ..|+.+++.+++.
T Consensus 199 v~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 199 VYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 34444566666666655555432 22334555555554 3456565555543
No 270
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.33 E-value=4.1 Score=31.33 Aligned_cols=86 Identities=13% Similarity=0.064 Sum_probs=60.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 012365 49 INSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128 (465)
Q Consensus 49 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 128 (465)
...++..+...+.......+++.+...+ ..+....+.++..|++... ++....++. ..+.......++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 3457777777788888999999888877 4678888999999887643 333344432 1233445557777777
Q ss_pred cCCHHHHHHHHHHH
Q 012365 129 KKDVQGALMVLKEM 142 (465)
Q Consensus 129 ~g~~~~a~~~~~~m 142 (465)
.+.++++..++.++
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 77777777777665
No 271
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.24 E-value=1.1 Score=38.77 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=59.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH
Q 012365 40 GELVPSTETINSILHACEESYEFNLVRRIYPMICHHN---LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTA 116 (465)
Q Consensus 40 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 116 (465)
.|.+.+..+...++..-....+++.+...+-.+.... ..|+... .++++.+. .-+++++..++..=++.|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccch
Confidence 4555555555555555555566666666665554321 1122111 12222222 23556777777777777777777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012365 117 SMYNAIMAGYFRKKDVQGALMVLKEMEQ 144 (465)
Q Consensus 117 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 144 (465)
.+++.+|+.+.+.+++.+|.++.-.|..
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 7777777777777777777777666654
No 272
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=92.23 E-value=7.2 Score=33.86 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=34.8
Q ss_pred hHhhhhhhHHHHHHHHHHHc-------------CCCCChhH--HHHHHHHHHhcCChhhHHHHHh---ccCCCCCChhHH
Q 012365 371 CVNARDLKRAHLIWKEYENA-------------GLPYNVLS--YLWMYKAFLASGNRKSASKLLS---KMPKDDPHVRFV 432 (465)
Q Consensus 371 ~~~~g~~~~A~~~~~~m~~~-------------g~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~---~m~~~~~~~~~~ 432 (465)
|.-.|+...|...++...+. +.+++... +..++-.-+..++.+.-..+.+ ..+++++.|...
T Consensus 151 yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~~~~ 230 (260)
T PF04190_consen 151 YLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSFKEY 230 (260)
T ss_dssp HHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHTHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHHHHHH
Confidence 44557777777777766644 23344332 2233333344454433322222 234566777777
Q ss_pred HHHHHhhc
Q 012365 433 IQACKQTY 440 (465)
Q Consensus 433 l~~~~~~~ 440 (465)
|.-++..|
T Consensus 231 L~~IG~~y 238 (260)
T PF04190_consen 231 LDKIGQLY 238 (260)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777764
No 273
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.12 E-value=5.3 Score=35.69 Aligned_cols=57 Identities=14% Similarity=-0.010 Sum_probs=38.4
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHH----cCCCCC-hhHHHHHHHHHHhcCChhhHHHHHhccC
Q 012365 367 LLGACVNARDLKRAHLIWKEYEN----AGLPYN-VLSYLWMYKAFLASGNRKSASKLLSKMP 423 (465)
Q Consensus 367 ll~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 423 (465)
+.-++...|....|.+.-++..+ .|-.+. ......+.+.|-..|+.+.|+.-+++..
T Consensus 212 maValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 212 MAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 44456677888777777777654 343322 2356677788888888888888887644
No 274
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.10 E-value=0.094 Score=40.77 Aligned_cols=84 Identities=17% Similarity=0.249 Sum_probs=58.3
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChh
Q 012365 223 LVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLS 302 (465)
Q Consensus 223 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (465)
++..+.+.+.+.....+++.+...+...++...+.++..|++.++.++..++++.... .+ ...++..|.+.+.++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~--yd---~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN--YD---LDKALRLCEKHGLYE 87 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS--S----CTHHHHHHHTTTSHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc--cC---HHHHHHHHHhcchHH
Confidence 5667777888888888888888777666788888899999998887777777772222 11 134555566677777
Q ss_pred HHHHHHHHH
Q 012365 303 SATDLLKQL 311 (465)
Q Consensus 303 ~a~~~~~~~ 311 (465)
++.-++.++
T Consensus 88 ~a~~Ly~~~ 96 (143)
T PF00637_consen 88 EAVYLYSKL 96 (143)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHc
Confidence 777776654
No 275
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.77 E-value=0.4 Score=26.64 Aligned_cols=24 Identities=17% Similarity=0.008 Sum_probs=13.6
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHH
Q 012365 14 YKKLITYSCDLLKVHVALDVVEQM 37 (465)
Q Consensus 14 y~~li~~~~~~g~~~~A~~~~~~m 37 (465)
|+.|-..|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455556666666666666666653
No 276
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.76 E-value=3.3 Score=33.73 Aligned_cols=77 Identities=12% Similarity=0.052 Sum_probs=51.8
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHH
Q 012365 58 ESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEM---NLMPTASMYNAIMAGYFRKKDVQG 134 (465)
Q Consensus 58 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~ 134 (465)
+.|+ +.|.+.|-.+...+.--++...-.|...|. ..+.+++..++.+..+. +-.+|+..+..|...+.+.|+.+.
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3444 556666767766665556666666666555 56778888887766533 225678888888888888888877
Q ss_pred HH
Q 012365 135 AL 136 (465)
Q Consensus 135 a~ 136 (465)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 63
No 277
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.69 E-value=8.8 Score=33.77 Aligned_cols=166 Identities=15% Similarity=0.115 Sum_probs=81.7
Q ss_pred HHHHHHHHHcCCChh---HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCccc-hhhHhhH
Q 012365 220 KSALVSALASHGRTS---DAIIVYEEIKEAGCNLE-PRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDG-CCRLILH 294 (465)
Q Consensus 220 ~~~l~~~~~~~g~~~---~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~ 294 (465)
...++.+|...+..+ +|..+++.+.... |+ +..+..-++.+.+.++.+.+.+.+..|...-..++. +..++..
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 556677777766654 3455555554443 33 445555566666677788888888877765433332 2222222
Q ss_pred h--hhcCChhHHHHHHHHHHH-cccchhH-HHH-HHHHHHHHhhhcC----CCCchhhhHHhHHHHHhhcCCCCcHHH--
Q 012365 295 C--VRFKQLSSATDLLKQLKD-KFKDDEM-AME-YHFSEIFCQIATT----DPPDVQIGLDLLQFIKDELGLPPSRKC-- 363 (465)
Q Consensus 295 ~--~~~~~~~~a~~~~~~~~~-~~~~~~~-~~~-~~l~~~~~~~~~~----~~~~~~~A~~~~~~m~~~~~~~p~~~~-- 363 (465)
+ ........+...++.+.. +..+... ... .++...+.. ... ....++...+++..+....+.+.+..+
T Consensus 165 i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~-~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~ 243 (278)
T PF08631_consen 165 IKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLT-TQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS 243 (278)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH-cCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 2 122334455555555444 3222221 111 222222221 111 112255555555544412233333333
Q ss_pred -HHHHHH----HhHhhhhhhHHHHHHHHHH
Q 012365 364 -LDFLLG----ACVNARDLKRAHLIWKEYE 388 (465)
Q Consensus 364 -~~~ll~----~~~~~g~~~~A~~~~~~m~ 388 (465)
..++++ .+.+.++++.|.+.|+-..
T Consensus 244 a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 244 AIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 233433 3457889999999887544
No 278
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.64 E-value=13 Score=35.60 Aligned_cols=118 Identities=10% Similarity=0.058 Sum_probs=74.3
Q ss_pred cCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHccCcHHHHH
Q 012365 196 CGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG---CNLEPRAVIALIEHLNSEGELNRLI 272 (465)
Q Consensus 196 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~~~g~~~~a~ 272 (465)
..+.+.|.++++.+....+......-.-.+.+...|++++|++.|+...... .+.....+.-+.-.+.-..++++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 4467788888887655555444322223345666788888888888655321 1223344556667777888888888
Q ss_pred HHHHHHcCCCCCccchhhHhhH--hhhcCCh-------hHHHHHHHHHHH
Q 012365 273 QLLEEVHDPDYWMDGCCRLILH--CVRFKQL-------SSATDLLKQLKD 313 (465)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-------~~a~~~~~~~~~ 313 (465)
..|..+.+.+.+..++...+.+ +...++. ++|.++|.++..
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 8888888776664444333332 3456666 777888877665
No 279
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.45 E-value=6 Score=31.35 Aligned_cols=54 Identities=13% Similarity=0.090 Sum_probs=28.1
Q ss_pred HhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCC
Q 012365 372 VNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKD 425 (465)
Q Consensus 372 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 425 (465)
...|.++......+-+...+-+.....-..|.-+-.+.|++.+|.++|+.+...
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 344555555544444444333444444555555555666666666666655543
No 280
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.28 E-value=8.4 Score=32.75 Aligned_cols=73 Identities=11% Similarity=0.011 Sum_probs=45.3
Q ss_pred HHHHhcCCHHHHHHHHHHhcCCCCChH---HHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012365 191 NAYTTCGEFEKARQVVLDAEIPVKSRS---EVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263 (465)
Q Consensus 191 ~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 263 (465)
..-.+.|++++|.+.|+.+....+... .+.-.++.++-+.+++++|+..+++....-..-...-|...|.+++
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 345577888888888887543322211 1245566777788888888888888777643333344555555554
No 281
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.19 E-value=0.17 Score=27.52 Aligned_cols=25 Identities=12% Similarity=0.037 Sum_probs=11.3
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHH
Q 012365 365 DFLLGACVNARDLKRAHLIWKEYEN 389 (465)
Q Consensus 365 ~~ll~~~~~~g~~~~A~~~~~~m~~ 389 (465)
..+...+...|++++|++.|++..+
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344444444555555554444444
No 282
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.96 E-value=1.5 Score=30.94 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=38.8
Q ss_pred hHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 012365 347 LLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYK 404 (465)
Q Consensus 347 ~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 404 (465)
-++.+. ...+-|++....+.+++|.+.+++..|.++|+-+..+ ..+....|..+++
T Consensus 32 glN~l~-~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 32 GLNNLF-GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHT-TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHh-ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 334444 5678899999999999999999999999999998865 3344447777765
No 283
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.89 E-value=18 Score=35.84 Aligned_cols=295 Identities=12% Similarity=0.075 Sum_probs=160.5
Q ss_pred ccCCCCCHHHHHH-----HHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhC
Q 012365 4 KLEITPSSASYKK-----LITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY---EFNLVRRIYPMICHH 75 (465)
Q Consensus 4 ~~~~~p~~~~y~~-----li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~ 75 (465)
+.|++-+..-|.. +|+-+...+.+..|+++-..+...-.. ....|.....-+.+.. +-+.+..+-+++...
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 4566666666654 577788889999999998887543222 1456666666665542 222233333333222
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----
Q 012365 76 NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLM----PTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN----- 146 (465)
Q Consensus 76 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----- 146 (465)
. -....|..+.+-...+|+++.|..+++.=...+.. .+..-+..-+.-..+.|+.+-...++-+|...-
T Consensus 504 -~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l 581 (829)
T KOG2280|consen 504 -L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSL 581 (829)
T ss_pred -C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 2 33456777777777889999999887643322210 122234556667778888888888877765421
Q ss_pred ------CCCCHHHHHHHHHhh---------CChhHHHHHHHHHHH--------cCCCCCHHHHHHHHHHHHhcCCHH---
Q 012365 147 ------VKPDSQTFSYLIHNC---------SNEEDIIKYYEQLKS--------AGGQITKYVFMALINAYTTCGEFE--- 200 (465)
Q Consensus 147 ------~~p~~~~~~~ll~~~---------~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~--- 200 (465)
.+.....|.-+++-- ...+....+-....+ .+..|+. ....+.+.+.....
T Consensus 582 ~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ 658 (829)
T KOG2280|consen 582 FMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEA 658 (829)
T ss_pred HHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHH
Confidence 111112222222210 011111111110111 1222222 12223333322211
Q ss_pred -------HHHHHHHHhc--CCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHH
Q 012365 201 -------KARQVVLDAE--IPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRL 271 (465)
Q Consensus 201 -------~a~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 271 (465)
+-.++.+.++ ....-...+.+-.+.-+...|+..+|.++-.+.+ .||...|..=+.+++..+++++-
T Consensus 659 ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeL 734 (829)
T KOG2280|consen 659 KALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEEL 734 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHH
Confidence 1111122111 1111222234556666777788888877666553 37888888888888888888877
Q ss_pred HHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHH
Q 012365 272 IQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLK 312 (465)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 312 (465)
+++-+.... |-+|.-.+.+|.+.|+.++|.+++.+..
T Consensus 735 ekfAkskks----PIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 735 EKFAKSKKS----PIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred HHHHhccCC----CCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 766555543 6677777888888888888888776553
No 284
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.89 E-value=10 Score=33.01 Aligned_cols=121 Identities=13% Similarity=0.109 Sum_probs=61.1
Q ss_pred HHHHhcCCHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHH
Q 012365 191 NAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN 269 (465)
Q Consensus 191 ~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 269 (465)
......|++.+|..+|+. +...+.... .--.++.+|...|+++.|..++..+...--.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~-~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSE-AKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccch-HHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 345667777777777766 223333322 345677777888888888888777655432222222222233334444443
Q ss_pred HHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHH
Q 012365 270 RLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLK 312 (465)
Q Consensus 270 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 312 (465)
+...+-.......-+++.-..+...+...|+.++|.+.+-.+.
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333434433333233333344444445555555555444333
No 285
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.86 E-value=2 Score=30.07 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=40.9
Q ss_pred hHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 012365 347 LLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYK 404 (465)
Q Consensus 347 ~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 404 (465)
-++.+. ...+-|++....+.+++|.+.+|+..|.++|+-...+ ...+...|..+++
T Consensus 29 ~mN~l~-~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 29 GLNNLF-GYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHh-ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 333444 5567899999999999999999999999999988744 2334556666654
No 286
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.74 E-value=4.3 Score=28.47 Aligned_cols=48 Identities=25% Similarity=0.351 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 012365 26 KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMIC 73 (465)
Q Consensus 26 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 73 (465)
|.-++.+-++.+......|++....+.+++|.+.+|+..|.++++-++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334455555555555556666666666666666666666666666554
No 287
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.69 E-value=5.4 Score=35.19 Aligned_cols=155 Identities=6% Similarity=-0.101 Sum_probs=91.4
Q ss_pred HHccCcHHHHHHHHHHHcCC-CCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCc
Q 012365 262 LNSEGELNRLIQLLEEVHDP-DYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPD 340 (465)
Q Consensus 262 ~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 340 (465)
....|+..+|-..++++.+. +.+.-+....-.+|.-.|+.+.....++++.....++.. .++.+.+.+.- +-.+.|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp-~~sYv~GmyaF-gL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLP-CYSYVHGMYAF-GLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCc-HHHHHHHHHHh-hHHHhcc
Confidence 34566777777777776553 223334444455667788888888888888764333321 22222222211 1122488
Q ss_pred hhhhHHhHHHHHhhcCCCC-cHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCC----hhHHHHHHHHHHhcCChhhH
Q 012365 341 VQIGLDLLQFIKDELGLPP-SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYN----VLSYLWMYKAFLASGNRKSA 415 (465)
Q Consensus 341 ~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~~A 415 (465)
+++|.+.-++.. .+.| |.-.-.++.+.+.-.|+..++.++..+-... .+.. ...|-...-.+...+.++.|
T Consensus 191 y~dAEk~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~a 266 (491)
T KOG2610|consen 191 YDDAEKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKA 266 (491)
T ss_pred chhHHHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHH
Confidence 888888877766 5555 4444556666677778888888776554432 2211 12344444556677888999
Q ss_pred HHHHhcc
Q 012365 416 SKLLSKM 422 (465)
Q Consensus 416 ~~~~~~m 422 (465)
+++|++=
T Consensus 267 leIyD~e 273 (491)
T KOG2610|consen 267 LEIYDRE 273 (491)
T ss_pred HHHHHHH
Confidence 9998764
No 288
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.53 E-value=15 Score=34.51 Aligned_cols=157 Identities=11% Similarity=0.157 Sum_probs=89.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHhhC
Q 012365 87 MISLNVKIKDFDSAYSLLDDLKEMNLMPTAS-MYNAIMAGYFRKKDVQGALMVLKEMEQAN---VKPDSQTFSYLIHNCS 162 (465)
Q Consensus 87 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~ 162 (465)
+|.-..+..+...-.+.-.+..+. .||-. .|..| +--......++.++|++..+.| +..+.. ....+
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILL--AEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~-----~~~~g 244 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEI--NPDCADAYILL--AEEEASTIVEAEELLRQAVKAGEASLGKSQF-----LQHHG 244 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc--ccccccCHHHHHHHHHHHHHHHHHhhchhhh-----hhccc
Confidence 344444555555544444444432 24332 22222 2223455788888888876543 111100 00010
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhc--CCCCChHHHHHHHHHHHHcCCChhHHHHHH
Q 012365 163 NEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAE--IPVKSRSEVKSALVSALASHGRTSDAIIVY 240 (465)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 240 (465)
..++.+......+-..+-..+..++.+.|+.++|.+.|+++- .+..+...+...|+.++...+.+.++..++
T Consensus 245 ------~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 245 ------HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred ------chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 122233333334444555567788889999999999999853 233334445788999999999999999999
Q ss_pred HHHHHcCCCCC--HHHHHHHH
Q 012365 241 EEIKEAGCNLE--PRAVIALI 259 (465)
Q Consensus 241 ~~m~~~~~~p~--~~~~~~ll 259 (465)
.+..+... |. ..+|+..+
T Consensus 319 ~kYdDi~l-pkSAti~YTaAL 338 (539)
T PF04184_consen 319 AKYDDISL-PKSATICYTAAL 338 (539)
T ss_pred HHhccccC-CchHHHHHHHHH
Confidence 99755432 33 34465544
No 289
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.91 E-value=1.3 Score=31.29 Aligned_cols=57 Identities=11% Similarity=0.085 Sum_probs=34.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 012365 169 KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVS 225 (465)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 225 (465)
+-+..+....+.|++.+..+.+.+|.+.+++..|.++|+....+..+....|..+++
T Consensus 31 rglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 31 RGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 344455556778888888888888888888888888887643333333223554443
No 290
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.86 E-value=23 Score=35.37 Aligned_cols=25 Identities=12% Similarity=0.283 Sum_probs=18.2
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHH
Q 012365 221 SALVSALASHGRTSDAIIVYEEIKE 245 (465)
Q Consensus 221 ~~l~~~~~~~g~~~~a~~~~~~m~~ 245 (465)
..|+..|...+++.+|+..+-..++
T Consensus 509 e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 509 EVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHHccChHHHHHHHHhccC
Confidence 4477778888888888877766544
No 291
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=89.48 E-value=8 Score=29.66 Aligned_cols=53 Identities=11% Similarity=0.194 Sum_probs=25.1
Q ss_pred hccCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012365 92 VKIKDFDSAYSLLDDLKEMN--LMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQ 144 (465)
Q Consensus 92 ~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 144 (465)
.+.|++++|.+.|+.+..+- -+-....--.++.+|.+.+++++|...+++..+
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34455555555555554431 011223333445555555555555555555554
No 292
>PRK11906 transcriptional regulator; Provisional
Probab=89.27 E-value=19 Score=33.70 Aligned_cols=131 Identities=11% Similarity=0.116 Sum_probs=86.4
Q ss_pred HHH--HHHHHHHhcc-----cCHHHHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHh
Q 012365 12 ASY--KKLITYSCDL-----LKVHVALDVVEQMVQ-GELVPS-TETINSILHACEE---------SYEFNLVRRIYPMIC 73 (465)
Q Consensus 12 ~~y--~~li~~~~~~-----g~~~~A~~~~~~m~~-~~~~p~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~ 73 (465)
..| ...+.+.... -+.+.|+.+|.+... +...|+ ...|..+..++.. ..+..+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 445 5566665542 246778888888872 223444 3344433333211 234556777777777
Q ss_pred hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012365 74 HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQ 144 (465)
Q Consensus 74 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 144 (465)
+.+ +-|+.....+..+..-.++++.|..+|++....+ |....+|....-...-+|+.++|.+.+++..+
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 776 5678887777777788888999999999888765 34456666666667778999999988888554
No 293
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.26 E-value=0.73 Score=23.32 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhc
Q 012365 398 SYLWMYKAFLASGNRKSASKLLSK 421 (465)
Q Consensus 398 ~~~~l~~~~~~~g~~~~A~~~~~~ 421 (465)
....+..++...|++++|.+++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 344566777777777777777653
No 294
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.12 E-value=11 Score=30.71 Aligned_cols=105 Identities=10% Similarity=0.068 Sum_probs=67.4
Q ss_pred hhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHH-----HHHHhHhhhhhhHHHHHHHHHHHcCC
Q 012365 318 DEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDF-----LLGACVNARDLKRAHLIWKEYENAGL 392 (465)
Q Consensus 318 ~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~-----ll~~~~~~g~~~~A~~~~~~m~~~g~ 392 (465)
+..+.+..+..+...-...+.+++++|...++... + .|....+.. |.+.....|.+|.|+..++.....++
T Consensus 82 n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l---~-~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w 157 (207)
T COG2976 82 NGKTIYAVLAALELAKAEVEANNLDKAEAQLKQAL---A-QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW 157 (207)
T ss_pred ccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH---c-cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH
Confidence 33444444444444445555688888888887766 2 232233333 44556778899999988887776542
Q ss_pred CCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCC
Q 012365 393 PYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPH 428 (465)
Q Consensus 393 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 428 (465)
.......-.+++...|+.++|+.-|++.+..+.+
T Consensus 158 --~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 158 --AAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred --HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 2223334456788999999999999988877643
No 295
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.35 E-value=1.2 Score=24.04 Aligned_cols=29 Identities=14% Similarity=0.006 Sum_probs=25.0
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHc
Q 012365 362 KCLDFLLGACVNARDLKRAHLIWKEYENA 390 (465)
Q Consensus 362 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 390 (465)
.+|..+..++...|++++|...|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46788889999999999999999999885
No 296
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.29 E-value=4.7 Score=35.22 Aligned_cols=89 Identities=21% Similarity=0.223 Sum_probs=40.8
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 012365 75 HNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMN---LMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151 (465)
Q Consensus 75 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 151 (465)
.|.+.+..+...++..-....+++.++..+-+++..- ..|+... .+.++.+ -.-++++++.++..=.+.|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcchhccccch
Confidence 3434444444555554444555555555555554320 1111111 1112211 222455555555555555666666
Q ss_pred HHHHHHHHhhCChh
Q 012365 152 QTFSYLIHNCSNEE 165 (465)
Q Consensus 152 ~~~~~ll~~~~~~~ 165 (465)
++++.+|+.+.+.+
T Consensus 136 f~~c~l~D~flk~~ 149 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKE 149 (418)
T ss_pred hhHHHHHHHHHhcc
Confidence 66666666554443
No 297
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.24 E-value=0.67 Score=26.50 Aligned_cols=29 Identities=21% Similarity=0.202 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHhccCC
Q 012365 396 VLSYLWMYKAFLASGNRKSASKLLSKMPK 424 (465)
Q Consensus 396 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 424 (465)
..+++.|...|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35788888899999999999998887653
No 298
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.09 E-value=1 Score=24.64 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=13.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHH
Q 012365 113 MPTASMYNAIMAGYFRKKDVQGAL 136 (465)
Q Consensus 113 ~~~~~~~~~li~~~~~~g~~~~a~ 136 (465)
|-+...|+.+...|...|++++|.
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 345555666666666666665553
No 299
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=87.98 E-value=14 Score=30.59 Aligned_cols=62 Identities=18% Similarity=0.155 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012365 81 SETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME 143 (465)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 143 (465)
+..||-|.-.+...|+++.|.+.|+...+.+-.-+-...|--| ++---|++.-|.+=|-..-
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fY 160 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFY 160 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHH
Confidence 5667777777777777777777777776553111111111111 2223466666665554443
No 300
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.75 E-value=12 Score=30.31 Aligned_cols=63 Identities=13% Similarity=0.113 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012365 82 ETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPT--ASMYNAIMAGYFRKKDVQGALMVLKEMEQ 144 (465)
Q Consensus 82 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 144 (465)
..+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3555666667777777777777776665433332 33455666666666677666666665543
No 301
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=87.04 E-value=16 Score=30.31 Aligned_cols=199 Identities=19% Similarity=0.134 Sum_probs=100.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCcc-chhhHhh-Hhh
Q 012365 220 KSALVSALASHGRTSDAIIVYEEIKEA-GCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD-GCCRLIL-HCV 296 (465)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~-~~~ 296 (465)
+......+...+.+..+...+...... ........+......+...+....+...+........... ....... .+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALY 141 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 344444444455555555444444431 1112233333444444444445555555554444332221 1111122 344
Q ss_pred hcCChhHHHHHHHHHHHcccc---hhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCc--HHHHHHHHHHh
Q 012365 297 RFKQLSSATDLLKQLKDKFKD---DEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS--RKCLDFLLGAC 371 (465)
Q Consensus 297 ~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~--~~~~~~ll~~~ 371 (465)
..++++.+...+.+... ..+ .............. ..++.+.+...+.... ...|+ ...+..+...+
T Consensus 142 ~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~ 212 (291)
T COG0457 142 ELGDYEEALELYEKALE-LDPELNELAEALLALGALLE-----ALGRYEEALELLEKAL---KLNPDDDAEALLNLGLLY 212 (291)
T ss_pred HcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHH-----HhcCHHHHHHHHHHHH---hhCcccchHHHHHhhHHH
Confidence 55666666666665533 222 11111111111011 1267777777777776 33333 55666677777
Q ss_pred HhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCC
Q 012365 372 VNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPH 428 (465)
Q Consensus 372 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 428 (465)
...++++.|...+....... +.....+..+...+...|..+++...+++.....+.
T Consensus 213 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 213 LKLGKYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHcccHHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 77778888888888887752 222445555555555666788888887777765553
No 302
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.56 E-value=1.7 Score=24.67 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHH
Q 012365 12 ASYKKLITYSCDLLKVHVALDVVEQMV 38 (465)
Q Consensus 12 ~~y~~li~~~~~~g~~~~A~~~~~~m~ 38 (465)
.+++.|...|...|++++|+.++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 455555556666666666666665553
No 303
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=86.55 E-value=32 Score=33.20 Aligned_cols=388 Identities=11% Similarity=0.060 Sum_probs=204.7
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 012365 11 SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTET-INSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89 (465)
Q Consensus 11 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 89 (465)
-..|+.+|.---...+++.+..++..++.. -|..+- |.....-=.+.|..+.+.++|++.+. +++.+...|...+.
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLA 121 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHH
Confidence 345677777666666778888888888754 344433 33333334567888888899988775 45667777776665
Q ss_pred HHh-ccCCHHHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH---HHh---
Q 012365 90 LNV-KIKDFDSAYSLLDDLKEM-NL-MPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYL---IHN--- 160 (465)
Q Consensus 90 ~~~-~~g~~~~a~~~~~~m~~~-~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l---l~~--- 160 (465)
.+. ..|+.+...+.|+...+. |. -.+...|...|.--...+++.....+|+...+....-=...|... +..
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~ 201 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEE 201 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCCh
Confidence 544 347777888888776543 21 134567888888888888888888888888764211111111111 111
Q ss_pred --hCChhHHHHHH--------------------HHHHHcCCCCCH--HHHHHHH-------HHHHhcCCHHHHHHHHHHh
Q 012365 161 --CSNEEDIIKYY--------------------EQLKSAGGQITK--YVFMALI-------NAYTTCGEFEKARQVVLDA 209 (465)
Q Consensus 161 --~~~~~~~~~~~--------------------~~~~~~~~~~~~--~~~~~l~-------~~~~~~g~~~~a~~~~~~~ 209 (465)
....+.+.++- ..+...+-+.+. ...+.+- .++-..-...+....|+..
T Consensus 202 ~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~ 281 (577)
T KOG1258|consen 202 KILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEG 281 (577)
T ss_pred hhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhh
Confidence 01111111111 111111100000 0111111 1111122222222223321
Q ss_pred ------cCCC--CChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCC
Q 012365 210 ------EIPV--KSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDP 281 (465)
Q Consensus 210 ------~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 281 (465)
...+ .....+|+.-+.--...|+++.+.-+|+...-.--.-+.. |--.+.-....|+.+-|..++....+-
T Consensus 282 IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~ef-Wiky~~~m~~~~~~~~~~~~~~~~~~i 360 (577)
T KOG1258|consen 282 IKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEF-WIKYARWMESSGDVSLANNVLARACKI 360 (577)
T ss_pred ccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHH-HHHHHHHHHHcCchhHHHHHHHhhhhh
Confidence 1111 1122247777777788888888888888765422111222 222333333347777777666554432
Q ss_pred CCCccchhhHhh--HhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhH---HhHHHHHhhcC
Q 012365 282 DYWMDGCCRLIL--HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGL---DLLQFIKDELG 356 (465)
Q Consensus 282 ~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~---~~~~~m~~~~~ 356 (465)
-..-.....+.. .+-..|+++.|..+++.+.... |+.+.....-.....+ .|+.+.+. +++.... ...
T Consensus 361 ~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r-----~~~~~~~~~~~~l~s~~~-~~~ 433 (577)
T KOG1258|consen 361 HVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERR-----KGNLEDANYKNELYSSIY-EGK 433 (577)
T ss_pred cCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHH-----hcchhhhhHHHHHHHHhc-ccc
Confidence 222111222221 2335678999999999988865 4433322221222222 36666666 4444444 222
Q ss_pred CCCcHH--HHHHHHH-HhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 012365 357 LPPSRK--CLDFLLG-ACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASG 410 (465)
Q Consensus 357 ~~p~~~--~~~~ll~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 410 (465)
..+... .+.-..+ .+.-.++.+.|..++.++.+. ++++...|..+++.....+
T Consensus 434 ~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 434 ENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 222211 1112222 133457889999999999987 7888888988888765554
No 304
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=85.85 E-value=11 Score=28.98 Aligned_cols=82 Identities=20% Similarity=0.192 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-----CCCHHHHHHHHHHHhccCC-HHHHHHHHHHHHHcCCCCCHHHHHH
Q 012365 48 TINSILHACEESYEFNLVRRIYPMICHHNL-----KPNSETFRSMISLNVKIKD-FDSAYSLLDDLKEMNLMPTASMYNA 121 (465)
Q Consensus 48 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~ 121 (465)
..+.++.-....+++.-...+++.+..... ..+...|.+++.+.++..- --.+..+|+-|++.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 444555555555555555555555432110 2344566666666655544 3345566666666666666666777
Q ss_pred HHHHHHhc
Q 012365 122 IMAGYFRK 129 (465)
Q Consensus 122 li~~~~~~ 129 (465)
+|.++.+-
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 77665544
No 305
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.83 E-value=2.5 Score=22.67 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHhccCCCCCC
Q 012365 397 LSYLWMYKAFLASGNRKSASKLLSKMPKDDPH 428 (465)
Q Consensus 397 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 428 (465)
..|..+...|...|++++|.+.+++.++.+|.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 46778889999999999999999998776653
No 306
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.24 E-value=16 Score=28.65 Aligned_cols=69 Identities=9% Similarity=0.000 Sum_probs=35.9
Q ss_pred hcccCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhcc
Q 012365 22 CDLLKVHVALDVVEQMVQGELVPSTETINS-ILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKI 94 (465)
Q Consensus 22 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 94 (465)
.+.++.+++..++..+.-. .|....... -...+...|++.+|..+|+.+.... |.......|+..|...
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYA 90 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHH
Confidence 3456777777777776553 233222211 1223446677777777777765543 3333444444444443
No 307
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.17 E-value=0.52 Score=25.54 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=11.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHhcc
Q 012365 399 YLWMYKAFLASGNRKSASKLLSKM 422 (465)
Q Consensus 399 ~~~l~~~~~~~g~~~~A~~~~~~m 422 (465)
|..+...|...|++++|.+.|++.
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a 27 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444455555555544443
No 308
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=85.06 E-value=23 Score=30.22 Aligned_cols=53 Identities=8% Similarity=0.126 Sum_probs=30.0
Q ss_pred hcCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 012365 58 ESYEFNLVRRIYPMICHHNL--KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEM 110 (465)
Q Consensus 58 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 110 (465)
+.|++++|.+.|+.+..... +-...+.-.++-++-+.++++.|...+++....
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 55667777777766664321 112334444555566666677776666665543
No 309
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=85.00 E-value=16 Score=31.57 Aligned_cols=124 Identities=11% Similarity=0.007 Sum_probs=82.9
Q ss_pred HHHHHHhcccCHHHHHHHHHHHHhCC-----CCCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 012365 16 KLITYSCDLLKVHVALDVVEQMVQGE-----LVPST--------ETINSILHACEESYEFNLVRRIYPMICHHNLKPNSE 82 (465)
Q Consensus 16 ~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~--------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 82 (465)
.-.+-+.-..|+..|++..++-.+.= ...+. .....-|.+++..+++.++....-+--+..-+..+.
T Consensus 40 ~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpk 119 (309)
T PF07163_consen 40 EAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPK 119 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHH
Confidence 33344555688899988888765421 11111 122334788899999999877665554433344566
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-----cCCHHHHHHHH
Q 012365 83 TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR-----KKDVQGALMVL 139 (465)
Q Consensus 83 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-----~g~~~~a~~~~ 139 (465)
+...-|-.|.+.+.+..+.++-......--..+...|.++...|.. .|.+++|.++.
T Consensus 120 IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 120 ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 7777777899999999999988877654222344558877776655 69999998877
No 310
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.97 E-value=17 Score=28.57 Aligned_cols=18 Identities=39% Similarity=0.608 Sum_probs=9.1
Q ss_pred hccCCHHHHHHHHHHHHH
Q 012365 92 VKIKDFDSAYSLLDDLKE 109 (465)
Q Consensus 92 ~~~g~~~~a~~~~~~m~~ 109 (465)
.+.|++.+|.++|+++..
T Consensus 55 i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHhCCHHHHHHHHHHHhc
Confidence 444555555555555443
No 311
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.52 E-value=0.33 Score=37.66 Aligned_cols=84 Identities=11% Similarity=0.155 Sum_probs=50.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 012365 52 ILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131 (465)
Q Consensus 52 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 131 (465)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.. +..-...++..+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45555566667777777777776554556777777777777777666666666511 11233445666666666
Q ss_pred HHHHHHHHHHH
Q 012365 132 VQGALMVLKEM 142 (465)
Q Consensus 132 ~~~a~~~~~~m 142 (465)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666666554
No 312
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.93 E-value=10 Score=30.84 Aligned_cols=100 Identities=13% Similarity=-0.022 Sum_probs=72.0
Q ss_pred CCchhhhHHhHHHHHhhcCCCCc---HHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhh
Q 012365 338 PPDVQIGLDLLQFIKDELGLPPS---RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKS 414 (465)
Q Consensus 338 ~~~~~~A~~~~~~m~~~~~~~p~---~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 414 (465)
+|++++|..-|....+...-.|. ...|..-..++.+.+.++.|..-..+.++.+ |........-..+|.+..++++
T Consensus 108 ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek~ee 186 (271)
T KOG4234|consen 108 NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEKYEE 186 (271)
T ss_pred cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhhHHH
Confidence 48888888888877711111111 2344444556778899999998888888864 4444555555678999999999
Q ss_pred HHHHHhccCCCCCChhHHHHHHHh
Q 012365 415 ASKLLSKMPKDDPHVRFVIQACKQ 438 (465)
Q Consensus 415 A~~~~~~m~~~~~~~~~~l~~~~~ 438 (465)
|+.=|+++++.+|...-+-.+|..
T Consensus 187 aleDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 187 ALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHh
Confidence 999999999999987766666655
No 313
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=83.62 E-value=4 Score=27.38 Aligned_cols=46 Identities=9% Similarity=0.120 Sum_probs=24.2
Q ss_pred hhhhhhHHHHHHHHHHHcCCC-CCh-hHHHHHHHHHHhcCChhhHHHH
Q 012365 373 NARDLKRAHLIWKEYENAGLP-YNV-LSYLWMYKAFLASGNRKSASKL 418 (465)
Q Consensus 373 ~~g~~~~A~~~~~~m~~~g~~-p~~-~~~~~l~~~~~~~g~~~~A~~~ 418 (465)
...+..+|+..|+...+.-.. |+. .++..|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666554211 111 1555566666666666665543
No 314
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=83.60 E-value=24 Score=29.24 Aligned_cols=54 Identities=20% Similarity=0.188 Sum_probs=24.3
Q ss_pred HHhcCCHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHHcCCChhHHHHHHHHHHHc
Q 012365 193 YTTCGEFEKARQVVLDAEIPVKS-RSEVKSALVSALASHGRTSDAIIVYEEIKEA 246 (465)
Q Consensus 193 ~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 246 (465)
+...++.+.+...+......... ....+..+...+...++++.+...+......
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 231 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL 231 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh
Confidence 34445555555555442221111 1222444455555555555555555555443
No 315
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.16 E-value=21 Score=29.23 Aligned_cols=78 Identities=15% Similarity=0.164 Sum_probs=52.4
Q ss_pred HHhcCCHHHHHHHHHHhcCCC-CChHHHHHHHHHHHHcCCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHccCcH
Q 012365 193 YTTCGEFEKARQVVLDAEIPV-KSRSEVKSALVSALASHGRTSDAIIVYEEIKEA---GCNLEPRAVIALIEHLNSEGEL 268 (465)
Q Consensus 193 ~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~g~~ 268 (465)
+.+.|+-+ |.+.|-.++..+ -.+...... +..|....+.++++.++....+. +-.+|+..+.+|...+.+.|++
T Consensus 117 Wsr~~d~~-A~~~fL~~E~~~~l~t~elq~a-LAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGDQE-ALRRFLQLEGTPELETAELQYA-LATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCcHH-HHHHHHHHcCCCCCCCHHHHHH-HHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 45556644 555555444333 334433344 44455577899999998887654 3468899999999999999999
Q ss_pred HHHH
Q 012365 269 NRLI 272 (465)
Q Consensus 269 ~~a~ 272 (465)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8875
No 316
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.78 E-value=11 Score=31.22 Aligned_cols=75 Identities=8% Similarity=0.054 Sum_probs=40.6
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCCHHHHHHHHHH
Q 012365 15 KKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHH--NLKPNSETFRSMISL 90 (465)
Q Consensus 15 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~ 90 (465)
+..++.+.+.+++.+|+...+.-.+..+ .|...-+.+++.++-.|++++|..-++...+. ...+...+|..+|.+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4445556666666666666666555432 24445555666666666666666555444332 122334555555553
No 317
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.54 E-value=4.4 Score=32.91 Aligned_cols=72 Identities=17% Similarity=0.129 Sum_probs=55.6
Q ss_pred HHhHhhhhhhHHHHHHHHHHHcCCCCChh-----HHHHHHHHHHhcCChhhHHHHHhccCCCCCChhHHHHHHHhhcc
Q 012365 369 GACVNARDLKRAHLIWKEYENAGLPYNVL-----SYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQACKQTYT 441 (465)
Q Consensus 369 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l~~~~~~~~ 441 (465)
.-+.+.|++++|..-|...++. +|+... .|..-..++.+.+.|+.|+.-..+.++.+|+|.-.|.--..+|.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 3456889999999999999987 565544 45555568899999999999999999999998666554334443
No 318
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.48 E-value=0.71 Score=24.67 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=13.7
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHc
Q 012365 367 LLGACVNARDLKRAHLIWKEYENA 390 (465)
Q Consensus 367 ll~~~~~~g~~~~A~~~~~~m~~~ 390 (465)
+..++.+.|+.++|.+.|+++.+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 344455566666666666666543
No 319
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.04 E-value=13 Score=30.90 Aligned_cols=53 Identities=8% Similarity=0.023 Sum_probs=25.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 012365 53 LHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDD 106 (465)
Q Consensus 53 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 106 (465)
++.+.+.+.+.+++.....-++.. +.|...-..++..+|-.|++++|..-++-
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHH
Confidence 344444455555555554444433 33444444555555555555555544443
No 320
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=81.72 E-value=7.2 Score=29.43 Aligned_cols=72 Identities=13% Similarity=0.155 Sum_probs=34.3
Q ss_pred CcHHHHHHHHHHhHhh---hhhhHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCChhhHHHHHhccCCCCCChh
Q 012365 359 PSRKCLDFLLGACVNA---RDLKRAHLIWKEYENAGLPYNVL-SYLWMYKAFLASGNRKSASKLLSKMPKDDPHVR 430 (465)
Q Consensus 359 p~~~~~~~ll~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 430 (465)
++..+--.+.+++.+. .++.+...+++++.+...|.... ...-|.-++.|.|+++++.++++.+++..|.|.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 3333333444444443 23444555666665422122222 222333455566666666666666666555553
No 321
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=80.94 E-value=44 Score=30.44 Aligned_cols=64 Identities=16% Similarity=0.119 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCC---CC-hHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 012365 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPV---KS-RSEVKSALVSALASHGRTSDAIIVYEEIKE 245 (465)
Q Consensus 182 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 245 (465)
...++..+...+.+.|.++.|...+....... .. ...+...-+..+-..|+..+|+..+++...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566667777777788877777776633211 00 111233445566667777777777777666
No 322
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.07 E-value=2.2 Score=21.90 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=12.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHhccCC
Q 012365 399 YLWMYKAFLASGNRKSASKLLSKMPK 424 (465)
Q Consensus 399 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 424 (465)
|..+...|...|++++|...+++..+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 33444444445555555555444433
No 323
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=79.88 E-value=23 Score=26.92 Aligned_cols=70 Identities=17% Similarity=0.324 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCc--HHHHHHHHHHhHhhhhhhHHHHHHHHHHHc
Q 012365 319 EMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS--RKCLDFLLGACVNARDLKRAHLIWKEYENA 390 (465)
Q Consensus 319 ~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 390 (465)
..+..+.+.-+.+.....+..++.+.+.+++.+. + .-.|+ ......|.-++.+.|+++.++++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~-~-~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLL-K-SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHh-h-hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3344444444455555556788999999999998 4 23332 233445556789999999999999999985
No 324
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=79.08 E-value=27 Score=26.95 Aligned_cols=91 Identities=13% Similarity=0.228 Sum_probs=48.9
Q ss_pred HhhCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 012365 72 ICHHNLKPNSE--TFRSMISLNVKIKDFDSAYSLLDDLKEMN-----LMPTASMYNAIMAGYFRKKD-VQGALMVLKEME 143 (465)
Q Consensus 72 ~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~ 143 (465)
|.+.+..++.. ..|.++.-.+..+++.-...+++.+.-.. -..+..+|++++.+..+..- ---+..+|.-|+
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 33444444432 35666666666677777776666663211 02244456666666644443 233455566666
Q ss_pred HCCCCCCHHHHHHHHHhhC
Q 012365 144 QANVKPDSQTFSYLIHNCS 162 (465)
Q Consensus 144 ~~~~~p~~~~~~~ll~~~~ 162 (465)
+.+.+++..-|..++.++.
T Consensus 108 ~~~~~~t~~dy~~li~~~l 126 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAAL 126 (145)
T ss_pred HcCCCCCHHHHHHHHHHHH
Confidence 5555666666666666543
No 325
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=78.67 E-value=9.8 Score=33.76 Aligned_cols=88 Identities=14% Similarity=0.003 Sum_probs=64.7
Q ss_pred CCchhhhHHhHHHHHhhcCCCC-cHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHH
Q 012365 338 PPDVQIGLDLLQFIKDELGLPP-SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSAS 416 (465)
Q Consensus 338 ~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 416 (465)
+|.+++|+..|.... .+.| |++++..-..+|.+...+..|..-.+..+..+ ..-...|+.-+.+-...|...+|.
T Consensus 110 QgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~EAK 185 (536)
T KOG4648|consen 110 QGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNMEAK 185 (536)
T ss_pred ccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 488899998888777 5677 88888888889999999998887777776542 222335555555555667788888
Q ss_pred HHHhccCCCCCCh
Q 012365 417 KLLSKMPKDDPHV 429 (465)
Q Consensus 417 ~~~~~m~~~~~~~ 429 (465)
+=++..+...|..
T Consensus 186 kD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 186 KDCETVLALEPKN 198 (536)
T ss_pred HhHHHHHhhCccc
Confidence 8888888777754
No 326
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.52 E-value=5.7 Score=20.94 Aligned_cols=29 Identities=14% Similarity=0.313 Sum_probs=22.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHhccCCCCC
Q 012365 399 YLWMYKAFLASGNRKSASKLLSKMPKDDP 427 (465)
Q Consensus 399 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 427 (465)
+-.+..+|.+.|++++|.+.|+++.+.-|
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 34566778888999999999988876554
No 327
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=78.24 E-value=64 Score=30.75 Aligned_cols=185 Identities=11% Similarity=0.080 Sum_probs=127.9
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHH
Q 012365 250 LEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEI 329 (465)
Q Consensus 250 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 329 (465)
.|.....+++..+...-+..-+..+..+|...|-.--.+..++..|... ..+.-..+++++.+-.. +......-+...
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~ 141 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADK 141 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHH
Confidence 4666777888888888888888889999988777666777777778666 77788888988877333 334444444455
Q ss_pred HHhhhcCCCCchhhhHHhHHHHHhhcCCCC------cHHHHHHHHHHhHhhhhhhHHHHHHHHHHH-cCCCCChhHHHHH
Q 012365 330 FCQIATTDPPDVQIGLDLLQFIKDELGLPP------SRKCLDFLLGACVNARDLKRAHLIWKEYEN-AGLPYNVLSYLWM 402 (465)
Q Consensus 330 ~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p------~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l 402 (465)
+.. ++.+.+...|.++. . .+-| =...|.-+... -..+.+.-..+..++.. .|...-...+..+
T Consensus 142 yEk------ik~sk~a~~f~Ka~-y-rfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv 211 (711)
T COG1747 142 YEK------IKKSKAAEFFGKAL-Y-RFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDV 211 (711)
T ss_pred HHH------hchhhHHHHHHHHH-H-HhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 555 67777888887776 2 2222 12355555532 23567777777777764 4666666677788
Q ss_pred HHHHHhcCChhhHHHHHhccCCCCCC--h--hHHHHHHHhhccccchh
Q 012365 403 YKAFLASGNRKSASKLLSKMPKDDPH--V--RFVIQACKQTYTIPSLQ 446 (465)
Q Consensus 403 ~~~~~~~g~~~~A~~~~~~m~~~~~~--~--~~~l~~~~~~~~~~~~~ 446 (465)
..-|....++.+|++++..+++.+-. | ..++...+..|..+..+
T Consensus 212 ~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~ 259 (711)
T COG1747 212 YKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQL 259 (711)
T ss_pred HHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhH
Confidence 88899999999999999999987653 3 45666666655544333
No 328
>PHA02875 ankyrin repeat protein; Provisional
Probab=78.20 E-value=17 Score=34.18 Aligned_cols=75 Identities=15% Similarity=0.177 Sum_probs=32.6
Q ss_pred hcccCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHhccCCH
Q 012365 22 CDLLKVHVALDVVEQMVQGELVPSTET--INSILHACEESYEFNLVRRIYPMICHHNLKPNSE--TFRSMISLNVKIKDF 97 (465)
Q Consensus 22 ~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~ 97 (465)
++.|+.+.+ +.+.+.|..|+... ..+.+..++..|+.+-+. .+.+.|..|+.. .....+...+..|+.
T Consensus 10 ~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~----~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIK----LLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHH----HHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 345555433 33344566555422 223344444556654333 333444434322 112234444555665
Q ss_pred HHHHHHH
Q 012365 98 DSAYSLL 104 (465)
Q Consensus 98 ~~a~~~~ 104 (465)
+.+..++
T Consensus 82 ~~v~~Ll 88 (413)
T PHA02875 82 KAVEELL 88 (413)
T ss_pred HHHHHHH
Confidence 5544444
No 329
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=77.95 E-value=57 Score=30.01 Aligned_cols=134 Identities=14% Similarity=0.146 Sum_probs=81.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHh----------cC-----CC-----------CChHHHH---HHHHHHHHcC
Q 012365 180 QITKYVFMALINAYTTCGEFEKARQVVLDA----------EI-----PV-----------KSRSEVK---SALVSALASH 230 (465)
Q Consensus 180 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----------~~-----~~-----------~~~~~~~---~~l~~~~~~~ 230 (465)
+-...++-.+-..+...|+.+.|.+++++. .. .. ......| -..|..+.+.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~R 116 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRR 116 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhc
Confidence 445566666677777888877777776541 01 00 0001112 2345677788
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HccCcHHHHHHHHHHHcC--CC----CCccchhhHhhHhhhcCCh--
Q 012365 231 GRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL-NSEGELNRLIQLLEEVHD--PD----YWMDGCCRLILHCVRFKQL-- 301 (465)
Q Consensus 231 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~-- 301 (465)
|-+..|+++.+-+..-+..-|+.....+|..| .++++++-.+++.+.... .. .-|+.......++...++.
T Consensus 117 G~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~ 196 (360)
T PF04910_consen 117 GCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEES 196 (360)
T ss_pred CcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccc
Confidence 88899999888888877555676666677666 566777777777776544 11 1234444555555555555
Q ss_pred -------------hHHHHHHHHHHH
Q 012365 302 -------------SSATDLLKQLKD 313 (465)
Q Consensus 302 -------------~~a~~~~~~~~~ 313 (465)
+.|...+.+...
T Consensus 197 ~~~~~~~~~~~~~~~A~~~L~~Ai~ 221 (360)
T PF04910_consen 197 SQSSAQSGRSENSESADEALQKAIL 221 (360)
T ss_pred cccccccccccchhHHHHHHHHHHH
Confidence 666666665544
No 330
>PRK09687 putative lyase; Provisional
Probab=77.83 E-value=49 Score=29.17 Aligned_cols=218 Identities=11% Similarity=0.020 Sum_probs=100.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCH----HHHHHHHHHHHHcCCCCCHHHH
Q 012365 44 PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDF----DSAYSLLDDLKEMNLMPTASMY 119 (465)
Q Consensus 44 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~~~~~~~~~~ 119 (465)
+|.......+.++...|..+-.. .+..+.+ .+|...-...+.+++..|+. +++..++..+... .|+...-
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~-~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFR-LAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHH-HHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 35555555666666665433322 2333332 23555555666666666653 3456666555322 3555555
Q ss_pred HHHHHHHHhcCCH-----HHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhH--HHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012365 120 NAIMAGYFRKKDV-----QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED--IIKYYEQLKSAGGQITKYVFMALINA 192 (465)
Q Consensus 120 ~~li~~~~~~g~~-----~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (465)
...+.++...+.. ..+.+.+..... .++...--..+.++++.+. +...+-.+.+ .++..+-...+.+
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~---d~~~~VR~~A~~a 182 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDEAAIPLLINLLK---DPNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCHHHHHHHHHHhc---CCCHHHHHHHHHH
Confidence 5555555544321 223333333322 2233333444444444332 2222222222 3444555555555
Q ss_pred HHhcC-CHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHH
Q 012365 193 YTTCG-EFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRL 271 (465)
Q Consensus 193 ~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 271 (465)
+.+.+ +...+...+...-...... +-...+.++.+.|+ ..|+..+-...+.+ + .....+.++...|.. ++
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~D~~~~--VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a 253 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQDKNEE--IRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TL 253 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhcCCChH--HHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hH
Confidence 55542 1334444444322222222 24555666666665 34555444444433 1 223566666666664 46
Q ss_pred HHHHHHHcCCC
Q 012365 272 IQLLEEVHDPD 282 (465)
Q Consensus 272 ~~~~~~~~~~~ 282 (465)
...+..+.+..
T Consensus 254 ~p~L~~l~~~~ 264 (280)
T PRK09687 254 LPVLDTLLYKF 264 (280)
T ss_pred HHHHHHHHhhC
Confidence 66666655433
No 331
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=77.59 E-value=18 Score=26.99 Aligned_cols=54 Identities=15% Similarity=0.071 Sum_probs=38.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHH
Q 012365 169 KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSA 222 (465)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 222 (465)
+.+..+...++.|++.+....+.++.+.+|+..|.++|+-...+..+....|-.
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y 123 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPY 123 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 445555567788888888889999999999999999998655444443333433
No 332
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.09 E-value=42 Score=32.60 Aligned_cols=24 Identities=21% Similarity=0.011 Sum_probs=13.3
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHH
Q 012365 220 KSALVSALASHGRTSDAIIVYEEI 243 (465)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~m 243 (465)
|..|..+....|++..|.+.|...
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhh
Confidence 555555555555555555555443
No 333
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.98 E-value=6 Score=23.21 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=11.8
Q ss_pred HHHHHhcccCHHHHHHHHHHHHh
Q 012365 17 LITYSCDLLKVHVALDVVEQMVQ 39 (465)
Q Consensus 17 li~~~~~~g~~~~A~~~~~~m~~ 39 (465)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 33445555555555555555544
No 334
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.73 E-value=40 Score=27.55 Aligned_cols=128 Identities=17% Similarity=0.161 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH----
Q 012365 12 ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINS--ILHACEESYEFNLVRRIYPMICHHNLKPNSETFR---- 85 (465)
Q Consensus 12 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---- 85 (465)
..|..++.... .+.+ +.....+.+........-..+.. +.+.+...|++++|..-+++.... |....+.
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~ 129 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAA 129 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHH
Confidence 44666666554 3333 55555556655432212222222 234467789999999998887754 2223333
Q ss_pred -HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 012365 86 -SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146 (465)
Q Consensus 86 -~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 146 (465)
.|.+.....|.+|+|..+++.....+. .......-.+.+...|+-++|..-|++..+.+
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 344566777999999999887775432 22223444567888999999999999888765
No 335
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=76.64 E-value=7.1 Score=20.84 Aligned_cols=28 Identities=11% Similarity=-0.088 Sum_probs=24.5
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHc
Q 012365 363 CLDFLLGACVNARDLKRAHLIWKEYENA 390 (465)
Q Consensus 363 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 390 (465)
+|..+...|...|++++|...|++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5677888899999999999999998874
No 336
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.44 E-value=6.7 Score=23.00 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=15.8
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHcC
Q 012365 223 LVSALASHGRTSDAIIVYEEIKEAG 247 (465)
Q Consensus 223 l~~~~~~~g~~~~a~~~~~~m~~~~ 247 (465)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4566666666666666666666543
No 337
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.98 E-value=1e+02 Score=31.99 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=19.8
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHh
Q 012365 14 YKKLITYSCDLLKVHVALDVVEQMVQ 39 (465)
Q Consensus 14 y~~li~~~~~~g~~~~A~~~~~~m~~ 39 (465)
|..|+..|...|+.++|+++|.+...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 66777777777888888888777755
No 338
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.29 E-value=1e+02 Score=31.48 Aligned_cols=172 Identities=14% Similarity=0.152 Sum_probs=102.4
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 012365 15 KKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHA----CEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL 90 (465)
Q Consensus 15 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 90 (465)
..-|..+++...++-|+.+-+. .+. +..+...++.. +.+.|++++|..-|-+-... +.|+ .+|.-
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~---~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~k 406 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKS---QHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKK 406 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHh---cCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHH
Confidence 3456666667777777766543 232 44455555544 45679999998877665432 1222 34555
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHhhCChhHHHH
Q 012365 91 NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN-VKPDSQTFSYLIHNCSNEEDIIK 169 (465)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~ 169 (465)
|....++..--.+++.+.+.|+ .+...-+.|+.+|.+.++.++-.++.+.-. .| ..-|..+---++. +.+-..+
T Consensus 407 fLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr---~snyl~~ 481 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILR---KSNYLDE 481 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHH---HhChHHH
Confidence 6667777777888888888885 566777889999999999988877776644 23 2223333322322 2222222
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012365 170 YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVL 207 (465)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 207 (465)
......+.+. +......+ +-..+++++|.+.+.
T Consensus 482 a~~LA~k~~~--he~vl~il---le~~~ny~eAl~yi~ 514 (933)
T KOG2114|consen 482 AELLATKFKK--HEWVLDIL---LEDLHNYEEALRYIS 514 (933)
T ss_pred HHHHHHHhcc--CHHHHHHH---HHHhcCHHHHHHHHh
Confidence 2222222221 34444444 345678899998887
No 339
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=75.14 E-value=3.5 Score=25.34 Aligned_cols=27 Identities=11% Similarity=0.132 Sum_probs=13.3
Q ss_pred HHHHHhcCChhhHHHHHhccCCCCCCh
Q 012365 403 YKAFLASGNRKSASKLLSKMPKDDPHV 429 (465)
Q Consensus 403 ~~~~~~~g~~~~A~~~~~~m~~~~~~~ 429 (465)
.-++.+.|++++|.++++.+++..|.+
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 334455555555555555555555544
No 340
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=74.74 E-value=77 Score=29.91 Aligned_cols=53 Identities=8% Similarity=-0.007 Sum_probs=26.6
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 012365 57 EESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEM 110 (465)
Q Consensus 57 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 110 (465)
...|+++.+.+.+....+. +.....+...+++...+.|+++.|..+-+-|...
T Consensus 334 ~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ 386 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSN 386 (831)
T ss_pred HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcc
Confidence 3455666655555444321 1233445555555555555555555555555443
No 341
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.65 E-value=28 Score=30.36 Aligned_cols=52 Identities=12% Similarity=0.043 Sum_probs=22.2
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012365 90 LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEM 142 (465)
Q Consensus 90 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 142 (465)
.|..+|.+.+|.++-++....+ +.+...|-.++..+...|+--.+.+-++.+
T Consensus 288 ~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 288 AYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3444444444444444444333 334444444444444444444444443333
No 342
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=74.48 E-value=13 Score=24.99 Aligned_cols=46 Identities=17% Similarity=0.178 Sum_probs=31.5
Q ss_pred cCCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCcHHHHHHH
Q 012365 229 SHGRTSDAIIVYEEIKEAGCNLE--PRAVIALIEHLNSEGELNRLIQL 274 (465)
Q Consensus 229 ~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~ 274 (465)
..++.++|+..|....+.-..|. -.++..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888887776643332 23567778888888888777664
No 343
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=74.47 E-value=22 Score=26.49 Aligned_cols=50 Identities=24% Similarity=0.324 Sum_probs=38.8
Q ss_pred hcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 012365 354 ELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYK 404 (465)
Q Consensus 354 ~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 404 (465)
...+-|++.....-+++|.+.+|+..|.++|+-+..+ ..+-...|-.+++
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 5678899999999999999999999999999988864 3343335555543
No 344
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=74.03 E-value=3.3 Score=31.07 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=19.8
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012365 24 LLKVHVALDVVEQMVQGELVPSTETINSILHAC 56 (465)
Q Consensus 24 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 56 (465)
.|.-..|-.+|..|++.|-+|| .|+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 4555566777777777777766 556665543
No 345
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.72 E-value=40 Score=26.16 Aligned_cols=18 Identities=22% Similarity=0.421 Sum_probs=7.8
Q ss_pred hccCCHHHHHHHHHHHHH
Q 012365 92 VKIKDFDSAYSLLDDLKE 109 (465)
Q Consensus 92 ~~~g~~~~a~~~~~~m~~ 109 (465)
...|++++|.++|+++.+
T Consensus 55 i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 55 IARGNYDEAARILRELLS 72 (153)
T ss_pred HHcCCHHHHHHHHHhhhc
Confidence 334444444444444443
No 346
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=73.26 E-value=63 Score=28.20 Aligned_cols=51 Identities=20% Similarity=0.243 Sum_probs=35.1
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHHccCcHHHHHH
Q 012365 223 LVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI-------ALIEHLNSEGELNRLIQ 273 (465)
Q Consensus 223 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-------~ll~~~~~~g~~~~a~~ 273 (465)
+.+-.++.+++++|+..+.++...|+..|..+.+ .+...|...|+.....+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH
Confidence 5566778889999999999999998877766543 34445555555444333
No 347
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=73.10 E-value=1.1e+02 Score=30.79 Aligned_cols=66 Identities=18% Similarity=0.258 Sum_probs=37.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCC-------hhHHHHHHHHHHHcCCCCCHH
Q 012365 188 ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGR-------TSDAIIVYEEIKEAGCNLEPR 253 (465)
Q Consensus 188 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~a~~~~~~m~~~~~~p~~~ 253 (465)
.+|-.|.++|++++|.++..+...........+...+..|..+.+ -++...-|++..+.....|+.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 355678899999999999955333333332336777888877533 224455555555544322554
No 348
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=73.09 E-value=28 Score=24.06 Aligned_cols=65 Identities=11% Similarity=0.083 Sum_probs=31.8
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 012365 65 VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135 (465)
Q Consensus 65 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 135 (465)
+.++++.+.+.|+ .+......+-.+-...|+.+.|.+++..+. +| |+ .|...+.++...|.-+-|
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~~--aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK--EG--WFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--Cc--HHHHHHHHHHHcCchhhh
Confidence 3445555555553 333333333333334455666666666655 32 32 355555555555554443
No 349
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=72.91 E-value=59 Score=28.33 Aligned_cols=87 Identities=14% Similarity=0.098 Sum_probs=60.0
Q ss_pred HHHHHHhcccCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhc
Q 012365 16 KLITYSCDLLKVHVALDVVEQMVQ--GELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVK 93 (465)
Q Consensus 16 ~li~~~~~~g~~~~A~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 93 (465)
.=|++++..|+|.+++...-+--+ ..++|..--.. |-.|++.+.+..+.++-..-.+..-..+..-|..+...|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLC--ILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELC--ILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHH--HHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 347889999999998877655533 23454433333 34577999999999888877664323344457777766655
Q ss_pred -----cCCHHHHHHHH
Q 012365 94 -----IKDFDSAYSLL 104 (465)
Q Consensus 94 -----~g~~~~a~~~~ 104 (465)
.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 49999999987
No 350
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=72.63 E-value=72 Score=28.61 Aligned_cols=76 Identities=18% Similarity=0.219 Sum_probs=51.3
Q ss_pred CchhhhHHhHHHHHhh--cCCCCcHHHHH--HHHHHhHhhhhhhHHHHHHHHHHH-----cCCCCChh-HHHHHHHHHHh
Q 012365 339 PDVQIGLDLLQFIKDE--LGLPPSRKCLD--FLLGACVNARDLKRAHLIWKEYEN-----AGLPYNVL-SYLWMYKAFLA 408 (465)
Q Consensus 339 ~~~~~A~~~~~~m~~~--~~~~p~~~~~~--~ll~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~-~~~~l~~~~~~ 408 (465)
++.++|+++++++.+. .--.|+.+.|. ....++-..||..++++++++..+ .|++|++. .|..+..-|.+
T Consensus 89 ~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk 168 (380)
T KOG2908|consen 89 SDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYK 168 (380)
T ss_pred ccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHH
Confidence 5777888888877732 23356666664 345566678999999999988887 57888665 46666655544
Q ss_pred -cCChhh
Q 012365 409 -SGNRKS 414 (465)
Q Consensus 409 -~g~~~~ 414 (465)
.|++..
T Consensus 169 ~~~d~a~ 175 (380)
T KOG2908|consen 169 KIGDFAS 175 (380)
T ss_pred HHHhHHH
Confidence 466554
No 351
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=72.26 E-value=1e+02 Score=30.08 Aligned_cols=376 Identities=10% Similarity=0.084 Sum_probs=200.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012365 45 STETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124 (465)
Q Consensus 45 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 124 (465)
+...+..|+.---...+.+.+..++..+...- |.--.-|......=.+.|..+.+.++|++-.. |++.+...|...+.
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKY-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLA 121 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHH
Confidence 44456666655444556677888888888652 33344667777777888999999999999876 56778888887776
Q ss_pred HHH-hcCCHHHHHHHHHHHHH-CCCCC-CHHHHHHHH---HhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---
Q 012365 125 GYF-RKKDVQGALMVLKEMEQ-ANVKP-DSQTFSYLI---HNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTT--- 195 (465)
Q Consensus 125 ~~~-~~g~~~~a~~~~~~m~~-~~~~p-~~~~~~~ll---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 195 (465)
.+. ..|+.+...+.|+.... .|..- ....+...| ..+.+...+..+++.+++.-..--...|.......-.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~ 201 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEE 201 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCCh
Confidence 554 46788888888888775 23221 222333333 3445555555566665543211111111111111111
Q ss_pred --cCCHHHHHHHH-----------------------HHhcCCCCChHHHHHHHH-------HHHHcCCChhHHHHHHHHH
Q 012365 196 --CGEFEKARQVV-----------------------LDAEIPVKSRSEVKSALV-------SALASHGRTSDAIIVYEEI 243 (465)
Q Consensus 196 --~g~~~~a~~~~-----------------------~~~~~~~~~~~~~~~~l~-------~~~~~~g~~~~a~~~~~~m 243 (465)
....+++.++- +....+.+......+.+- ..+-..-........|++-
T Consensus 202 ~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~ 281 (577)
T KOG1258|consen 202 KILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEG 281 (577)
T ss_pred hhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhh
Confidence 11122222211 111111111111111111 1111222222233333333
Q ss_pred HHc---CCCC----CHHHHHHHHHHHHccCcHHHHHHHHHHHcCCC-CCccchhhHhhHhhhcCChhHHHHHHHHHHHcc
Q 012365 244 KEA---GCNL----EPRAVIALIEHLNSEGELNRLIQLLEEVHDPD-YWMDGCCRLILHCVRFKQLSSATDLLKQLKDKF 315 (465)
Q Consensus 244 ~~~---~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 315 (465)
..+ .++| +..+|...+.--.+.|+.+.+..+++...-.- .-...+...+......|+.+-|..++....+-.
T Consensus 282 IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~ 361 (577)
T KOG1258|consen 282 IKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH 361 (577)
T ss_pred ccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc
Confidence 322 1222 34567777777788899998888888765321 112233333443445588888888777666532
Q ss_pred cchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHH-HHHHHHhHhhhhhhHHHH---HHHHHHHcC
Q 012365 316 KDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCL-DFLLGACVNARDLKRAHL---IWKEYENAG 391 (465)
Q Consensus 316 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~-~~ll~~~~~~g~~~~A~~---~~~~m~~~g 391 (465)
.+... ...++.+.++.+ .|+...|..+++.+. . .. |+..-. ..-+....+.|+.+.+.. ++....+.
T Consensus 362 ~k~~~-~i~L~~a~f~e~----~~n~~~A~~~lq~i~-~-e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~- 432 (577)
T KOG1258|consen 362 VKKTP-IIHLLEARFEES----NGNFDDAKVILQRIE-S-EY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG- 432 (577)
T ss_pred CCCCc-HHHHHHHHHHHh----hccHHHHHHHHHHHH-h-hC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc-
Confidence 22222 222233333332 589999999999998 3 33 655422 223444567788887773 33333321
Q ss_pred CCCChhHHHHHH----H-HHHhcCChhhHHHHHhccCCCCCChhHH
Q 012365 392 LPYNVLSYLWMY----K-AFLASGNRKSASKLLSKMPKDDPHVRFV 432 (465)
Q Consensus 392 ~~p~~~~~~~l~----~-~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 432 (465)
.-+......+. . .+.-.++.+.|..++.++.+..+....+
T Consensus 433 -~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~ 477 (577)
T KOG1258|consen 433 -KENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVL 477 (577)
T ss_pred -ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHH
Confidence 22222333222 2 2344688999999999999988865433
No 352
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=72.08 E-value=13 Score=32.25 Aligned_cols=60 Identities=15% Similarity=0.091 Sum_probs=49.9
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccC
Q 012365 363 CLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMP 423 (465)
Q Consensus 363 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 423 (465)
+++.....|..+|.+.+|.++.+...... |.+...|-.|+..|...||--+|.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 44556677889999999999999999874 7888899999999999999888888777764
No 353
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=71.69 E-value=19 Score=21.56 Aligned_cols=33 Identities=12% Similarity=0.202 Sum_probs=17.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012365 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159 (465)
Q Consensus 127 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 159 (465)
.+.|-.+++..++++|.+.|+.-+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345555555556666655555555555554443
No 354
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=71.67 E-value=40 Score=25.32 Aligned_cols=63 Identities=13% Similarity=0.129 Sum_probs=43.5
Q ss_pred CCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCChhhHHHHHhc
Q 012365 356 GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVL-SYLWMYKAFLASGNRKSASKLLSK 421 (465)
Q Consensus 356 ~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 421 (465)
..+-|+.....-|.-- ...+...++|..|.+.|+--... .|......+...|++.+|.++++.
T Consensus 61 ~YknD~RyLkiWi~ya---~~~~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 61 RYKNDPRYLKIWLKYA---DNCDEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred hhcCCHHHHHHHHHHH---HhcCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 5666665444433211 12255788999999987755544 677777788899999999999863
No 355
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=71.43 E-value=37 Score=24.75 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=21.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHH
Q 012365 220 KSALVSALASHGRTSDAIIVYEEIKE 245 (465)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 245 (465)
|..++.-|...|..++|++++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 77888888888888888888888776
No 356
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.41 E-value=1.1e+02 Score=29.91 Aligned_cols=100 Identities=14% Similarity=0.205 Sum_probs=66.1
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHH
Q 012365 91 NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY 170 (465)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 170 (465)
..+.|+++.|.++..+.. +..-|..|.++....|++..|.+.|....+.+ ..-.+-.+.++.+.+..+
T Consensus 647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~------~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARDLG------SLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcchh------hhhhhhhhcCChhHHHHH
Confidence 345688888877765443 66779999999999999999999998866432 111222223333334445
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012365 171 YEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208 (465)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 208 (465)
-....+.|. .|....+|...|+++++.+++.+
T Consensus 715 a~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 715 ASLAKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 555555553 24445567888999999999863
No 357
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=70.05 E-value=19 Score=21.59 Aligned_cols=32 Identities=3% Similarity=0.099 Sum_probs=17.7
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 012365 58 ESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89 (465)
Q Consensus 58 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 89 (465)
+.|-.+++..+++.|.+.|+..+...|..++.
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 44555555555555555555555555555543
No 358
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=69.61 E-value=99 Score=28.97 Aligned_cols=73 Identities=15% Similarity=0.086 Sum_probs=51.3
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCC-ChhHHHHHHH
Q 012365 364 LDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDP-HVRFVIQACK 437 (465)
Q Consensus 364 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~l~~~~ 437 (465)
...|+.-|...|++.+|.+..+++--- +--....+.+++.+..+.|+-..-+.++++.-+.+. +.+.|-..+.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf~ 585 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTKGFE 585 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhhhhh
Confidence 456888899999999999887765421 223455888899999999998778888877766554 3444443333
No 359
>PRK11619 lytic murein transglycosylase; Provisional
Probab=69.53 E-value=1.3e+02 Score=30.34 Aligned_cols=90 Identities=10% Similarity=0.049 Sum_probs=55.0
Q ss_pred hhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHh
Q 012365 341 VQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420 (465)
Q Consensus 341 ~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 420 (465)
..+|...+.... ....+......-+......++++.+...+..|-.. ..-...-.--+.+++...|+.++|..+|+
T Consensus 295 ~~~a~~w~~~~~---~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~-~~~~~rw~YW~aRa~~~~g~~~~A~~~~~ 370 (644)
T PRK11619 295 TDEQAKWRDDVI---MRSQSTSLLERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLEQGRKAEAEEILR 370 (644)
T ss_pred CHHHHHHHHhcc---cccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHh-hccCHhhHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555543 11123334444444445778888888888777543 23344556667778777899999999998
Q ss_pred ccCCCCCChhHHHHH
Q 012365 421 KMPKDDPHVRFVIQA 435 (465)
Q Consensus 421 ~m~~~~~~~~~~l~~ 435 (465)
+... ..++...|.+
T Consensus 371 ~~a~-~~~fYG~LAa 384 (644)
T PRK11619 371 QLMQ-QRGFYPMVAA 384 (644)
T ss_pred HHhc-CCCcHHHHHH
Confidence 8744 4455555443
No 360
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.43 E-value=69 Score=27.12 Aligned_cols=59 Identities=19% Similarity=0.264 Sum_probs=38.7
Q ss_pred hHhhhhhhHHHHHHHHHHHcCCCCChhHHHHH---H-HHHHh--cCChhhHHHHHhccCCCCCCh
Q 012365 371 CVNARDLKRAHLIWKEYENAGLPYNVLSYLWM---Y-KAFLA--SGNRKSASKLLSKMPKDDPHV 429 (465)
Q Consensus 371 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l---~-~~~~~--~g~~~~A~~~~~~m~~~~~~~ 429 (465)
-+..+++.+|..+|+++....+..+..-|..- + .++|. .++.-.+...+++-.+.+|++
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 34568889999999998876555555544421 1 12222 356666777788888888865
No 361
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.77 E-value=1.4e+02 Score=30.20 Aligned_cols=99 Identities=10% Similarity=0.100 Sum_probs=50.1
Q ss_pred CCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHHcC
Q 012365 40 GELVPSTETINS-----ILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKD---FDSAYSLLDDLKEMN 111 (465)
Q Consensus 40 ~~~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~ 111 (465)
-|++.+..-|.. ++.-+...+.+..|.++-..+...-.. +..+|.....-+.+..+ .+.+..+-+++...
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~- 503 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK- 503 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-
Confidence 455555544443 344455666777777766655432211 14455555555554422 22222233333321
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012365 112 LMPTASMYNAIMAGYFRKKDVQGALMVLKE 141 (465)
Q Consensus 112 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 141 (465)
. -...+|..+.+.....|+.+-|..+++.
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 1 2344566666666677777777666654
No 362
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=68.67 E-value=93 Score=28.29 Aligned_cols=94 Identities=10% Similarity=0.077 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCC--CCCcc------
Q 012365 220 KSALVSALASHGRTSDAIIVYEEIKEAGC-----NLEPRAVIALIEHLNSEGELNRLIQLLEEVHDP--DYWMD------ 286 (465)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~------ 286 (465)
..++..+....+.++++++.|+...+.-- -..-..+..|-..|....++++|.-+.....+. .+..+
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 34456666667778888887776554311 111234666667777777777766555443221 11111
Q ss_pred ---chhhHhhHhhhcCChhHHHHHHHHHHH
Q 012365 287 ---GCCRLILHCVRFKQLSSATDLLKQLKD 313 (465)
Q Consensus 287 ---~~~~~~~~~~~~~~~~~a~~~~~~~~~ 313 (465)
....+..++...|....|.+..++..+
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~k 234 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMK 234 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 112344455566666666666666665
No 363
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=67.16 E-value=13 Score=32.50 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=33.4
Q ss_pred CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012365 113 MPTASM-YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158 (465)
Q Consensus 113 ~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 158 (465)
.||..+ |+.-|....+.||+++|++++++.++.|+.--..+|-..+
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 345444 5688888888888888888888888888766666655443
No 364
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=67.03 E-value=19 Score=29.60 Aligned_cols=36 Identities=17% Similarity=0.115 Sum_probs=24.2
Q ss_pred CCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCC
Q 012365 392 LPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDP 427 (465)
Q Consensus 392 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 427 (465)
..|++.+|..++.++...|+.++|.+..+++...-|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 367777777777777777777777777666655444
No 365
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=66.59 E-value=45 Score=23.84 Aligned_cols=52 Identities=19% Similarity=0.161 Sum_probs=26.2
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 012365 89 SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN 146 (465)
Q Consensus 89 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 146 (465)
+.+...|++++|..+.+.+. .||...|-+|.. .+.|..+++..-+..|...|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 33455566666655555442 355555554443 24454555555555554443
No 366
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=66.38 E-value=50 Score=26.69 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=24.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 012365 87 MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131 (465)
Q Consensus 87 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 131 (465)
.+..|.+.|.+++|.+++++..+ .|+......-+....+..+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
Confidence 44557777777777777777765 2444444444444444433
No 367
>PHA02875 ankyrin repeat protein; Provisional
Probab=66.22 E-value=41 Score=31.61 Aligned_cols=109 Identities=17% Similarity=0.160 Sum_probs=51.1
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHhhCCh
Q 012365 90 LNVKIKDFDSAYSLLDDLKEMNLMPTASM--YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ---TFSYLIHNCSNE 164 (465)
Q Consensus 90 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~ 164 (465)
..++.|+.+-+..++ +.|..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. ..+.+..+ ...
T Consensus 8 ~A~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A-~~~ 78 (413)
T PHA02875 8 DAILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDA-VEE 78 (413)
T ss_pred HHHHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHH-HHC
Confidence 345567765554444 4566665432 233444555667765 344445556555432 12222222 222
Q ss_pred hHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHH
Q 012365 165 EDIIKYYEQLKSAGGQITKY---VFMALINAYTTCGEFEKARQVVLD 208 (465)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~ 208 (465)
|..+ ..+.+.+.|...+.. .-.+.+...+..|+.+-+..+++.
T Consensus 79 g~~~-~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~ 124 (413)
T PHA02875 79 GDVK-AVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIAR 124 (413)
T ss_pred CCHH-HHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence 3322 344455554322211 112344555667777666666653
No 368
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=65.96 E-value=14 Score=19.15 Aligned_cols=29 Identities=24% Similarity=0.333 Sum_probs=19.0
Q ss_pred hhhhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 012365 375 RDLKRAHLIWKEYENAGLPYNVLSYLWMYK 404 (465)
Q Consensus 375 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 404 (465)
|+.+.|..+|+++.+. .+-+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~-~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEK-FPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHH-CCCChHHHHHHHH
Confidence 4567777888887765 3556666665554
No 369
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=65.26 E-value=72 Score=25.76 Aligned_cols=62 Identities=11% Similarity=0.023 Sum_probs=37.2
Q ss_pred hhhhHHhHHHHHhhcCCCCcH-HHHHHHHHHhHhhhh-----------hhHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 012365 341 VQIGLDLLQFIKDELGLPPSR-KCLDFLLGACVNARD-----------LKRAHLIWKEYENAGLPYNVLSYLWMYKAFL 407 (465)
Q Consensus 341 ~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~g~-----------~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 407 (465)
+++|..-|++.. .+.|+- .++..+..++...+. +++|...|++..+ ..|+..+|+.-+....
T Consensus 51 iedAisK~eeAL---~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 51 IEDAISKFEEAL---KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHH---HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH
Confidence 455555566655 577765 566666666665442 5556666666666 4799999988777653
No 370
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=64.54 E-value=43 Score=27.46 Aligned_cols=54 Identities=7% Similarity=0.087 Sum_probs=38.8
Q ss_pred HhcCCHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 012365 57 EESYEFNLVRRIYPMICH-HNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEM 110 (465)
Q Consensus 57 ~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 110 (465)
...++.+......+.+.+ ....|++.+|..++.++...|+.++|.++..++...
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355555555555444443 223689999999999999999999999998888765
No 371
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=64.38 E-value=1e+02 Score=27.09 Aligned_cols=96 Identities=7% Similarity=0.024 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHH----cCCCCCHHHHH-HHHHHHHccCcHHHHHHHHHHHcCCCCCccchhh--
Q 012365 218 EVKSALVSALASHGRTSDAIIVYEEIKE----AGCNLEPRAVI-ALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCR-- 290 (465)
Q Consensus 218 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-- 290 (465)
..|..+..-|++.++.+.+.++.++..+ .|.+.|..... -|--.|....-+++-++..+.|.+.|.+.+..+.
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK 195 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYK 195 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHH
Confidence 3477777888888888877776665443 35554433211 1122233344456677777777777765443322
Q ss_pred --HhhHhhhcCChhHHHHHHHHHHH
Q 012365 291 --LILHCVRFKQLSSATDLLKQLKD 313 (465)
Q Consensus 291 --~~~~~~~~~~~~~a~~~~~~~~~ 313 (465)
-...+....++.+|-.++-....
T Consensus 196 ~Y~Gi~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 196 VYKGIFKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 22233455667777777666554
No 372
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=63.92 E-value=26 Score=31.30 Aligned_cols=86 Identities=10% Similarity=-0.055 Sum_probs=38.0
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 012365 56 CEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135 (465)
Q Consensus 56 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 135 (465)
|.++|.+++|...|....... +-|++++..-..+|.+...+..|+.=.+.....+ ..-+-.|.--+.+-...|...+|
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHHH
Confidence 445555555555555443332 1244555555555555555544444333333221 11122344444444444555555
Q ss_pred HHHHHHHH
Q 012365 136 LMVLKEME 143 (465)
Q Consensus 136 ~~~~~~m~ 143 (465)
.+-++...
T Consensus 185 KkD~E~vL 192 (536)
T KOG4648|consen 185 KKDCETVL 192 (536)
T ss_pred HHhHHHHH
Confidence 54444444
No 373
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=63.68 E-value=1.6e+02 Score=29.76 Aligned_cols=126 Identities=13% Similarity=0.222 Sum_probs=63.7
Q ss_pred HHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH----------HHHHHHHHHhccCCHH
Q 012365 32 DVVEQMVQGELVP---STETINSILHACEESYEFNLVRRIYPMICHHNLKPNSE----------TFRSMISLNVKIKDFD 98 (465)
Q Consensus 32 ~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~li~~~~~~g~~~ 98 (465)
..+++|+++--.| +..+...++-.|....+++...++.+.+.+. ||.. .|...+.--.+-|+-+
T Consensus 184 ~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRa 260 (1226)
T KOG4279|consen 184 DYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRA 260 (1226)
T ss_pred HHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHH
Confidence 3455565542223 3455566666676777777777777777653 2211 2222333333446667
Q ss_pred HHHHHHHHHHHcC--CCCCHHHH-----HH--HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHhhC
Q 012365 99 SAYSLLDDLKEMN--LMPTASMY-----NA--IMAGYFRKKDVQGALMVLKEMEQANVKPDS---QTFSYLIHNCS 162 (465)
Q Consensus 99 ~a~~~~~~m~~~~--~~~~~~~~-----~~--li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~ 162 (465)
+|+.+.-.+.+.. +.||.... -- +-+.|...+..+.|.+.|++.-+ +.|.. ..+..++.+.+
T Consensus 261 kAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 261 KALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAG 334 (1226)
T ss_pred HHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhh
Confidence 7776665554432 34443321 11 11233344556667777776654 34433 23445555433
No 374
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=63.61 E-value=2.1e+02 Score=30.51 Aligned_cols=45 Identities=18% Similarity=0.062 Sum_probs=26.2
Q ss_pred hHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhc
Q 012365 371 CVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSK 421 (465)
Q Consensus 371 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 421 (465)
-..+.|+.+=+-+++++.+. +|+..-|. |+ ...|++++|++-+.+
T Consensus 882 q~SQkDPKEYLPfL~~L~~l--~~~~rry~--ID--~hLkRy~kAL~~L~~ 926 (928)
T PF04762_consen 882 QQSQKDPKEYLPFLQELQKL--PPLYRRYK--ID--DHLKRYEKALRHLSA 926 (928)
T ss_pred HHhccChHHHHHHHHHHHhC--Chhheeee--Hh--hhhCCHHHHHHHHHh
Confidence 34456677767777776663 44443332 22 246778888776654
No 375
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=63.47 E-value=1.7e+02 Score=29.41 Aligned_cols=150 Identities=12% Similarity=0.115 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHh-cccCHHHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCCC
Q 012365 11 SASYKKLITYSC-DLLKVHVALDVVEQMVQGELVPSTE-----TINSILHACEESYEFNLVRRIYPMICHH----NLKPN 80 (465)
Q Consensus 11 ~~~y~~li~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~ 80 (465)
..++-.+...+. ...+++.|...+++.....-.++-. .-..++..+.+.+... |...++...+. +..+-
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w 137 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAW 137 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhH
Confidence 344555666665 4688999999999775433223322 1223455565555544 88888876652 22223
Q ss_pred HHHHHHH-HHHHhccCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCC--------
Q 012365 81 SETFRSM-ISLNVKIKDFDSAYSLLDDLKEMN---LMPTASMYNAIMAGYF--RKKDVQGALMVLKEMEQAN-------- 146 (465)
Q Consensus 81 ~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~~-------- 146 (465)
...|..+ +..+...+++..|.+.++.+...- ..|-...+-.++.+.. ..+..+++.+.++++....
T Consensus 138 ~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~ 217 (608)
T PF10345_consen 138 YYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPS 217 (608)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCC
Confidence 3344444 333434479999999998876432 2344455555555544 4566677777777764321
Q ss_pred -CCCCHHHHHHHHHhh
Q 012365 147 -VKPDSQTFSYLIHNC 161 (465)
Q Consensus 147 -~~p~~~~~~~ll~~~ 161 (465)
-.|-...+..++..+
T Consensus 218 ~~~~qL~~~~lll~l~ 233 (608)
T PF10345_consen 218 VHIPQLKALFLLLDLC 233 (608)
T ss_pred CCcHHHHHHHHHHHHH
Confidence 134456666666654
No 376
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=63.37 E-value=23 Score=22.61 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012365 98 DSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME 143 (465)
Q Consensus 98 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 143 (465)
+...++++.+... .-|-.-.-.+|.++...|++++|.++++++.
T Consensus 7 ~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 7 EELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444444332 1233334456677777777777777766664
No 377
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=62.94 E-value=12 Score=23.88 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=10.6
Q ss_pred HHHHHHHHhcCChhhHHHHHhcc
Q 012365 400 LWMYKAFLASGNRKSASKLLSKM 422 (465)
Q Consensus 400 ~~l~~~~~~~g~~~~A~~~~~~m 422 (465)
-.++.+|...|++++|.++++++
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 33444555555555555554443
No 378
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=62.64 E-value=63 Score=25.08 Aligned_cols=65 Identities=22% Similarity=0.298 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc
Q 012365 200 EKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGE 267 (465)
Q Consensus 200 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 267 (465)
..+.+.+++.+....+. -..++..+...+..-.|.++++++.+.+...+..|.-.-+..+...|-
T Consensus 6 ~~~~~~lk~~glr~T~q---R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 6 EDAIERLKEAGLRLTPQ---RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHHcCCCcCHH---HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 44555565434443333 456888888888889999999999999877777776666666666653
No 379
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=62.44 E-value=2e+02 Score=29.80 Aligned_cols=260 Identities=13% Similarity=0.086 Sum_probs=136.2
Q ss_pred HHHHhcccCHHHHHHHHHHHHh---CC-----------CCCCHHHHH----HHHHH--HHhcCCHHHHHHHHHHHhhCCC
Q 012365 18 ITYSCDLLKVHVALDVVEQMVQ---GE-----------LVPSTETIN----SILHA--CEESYEFNLVRRIYPMICHHNL 77 (465)
Q Consensus 18 i~~~~~~g~~~~A~~~~~~m~~---~~-----------~~p~~~~~~----~ll~~--~~~~~~~~~a~~~~~~~~~~~~ 77 (465)
|+..++.|+++.|-.++++... .+ --|+....+ .++.+ .....++++|..+++++...--
T Consensus 367 I~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~ 446 (894)
T COG2909 367 IDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLK 446 (894)
T ss_pred HHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhC
Confidence 4444567888888877777511 11 112221111 12222 3456889999999888765322
Q ss_pred CCC----HH---HHHHHHHH-HhccCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 012365 78 KPN----SE---TFRSMISL-NVKIKDFDSAYSLLDDLKEM----NLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145 (465)
Q Consensus 78 ~~~----~~---~~~~li~~-~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 145 (465)
.|+ .. .++.+-.. ....|+++.|.++-+..... -..+....+..+..+..-.|+.++|..+..+..+.
T Consensus 447 ~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 447 APMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred cCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 222 11 33333222 33458888888887765432 22345666777888888899999999888776654
Q ss_pred CCCCCHHHHHHHHHh-----hCChhH---H--HHHHHHHHHc-----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHH---
Q 012365 146 NVKPDSQTFSYLIHN-----CSNEED---I--IKYYEQLKSA-----G-GQITKYVFMALINAYTTCGEFEKARQVV--- 206 (465)
Q Consensus 146 ~~~p~~~~~~~ll~~-----~~~~~~---~--~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~--- 206 (465)
.-.-+...+...... +-..|+ + +..+...... . ..+-..++..+..++.+ ++.+..-.
T Consensus 527 a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~ 603 (894)
T COG2909 527 ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLG 603 (894)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhc
Confidence 323344433333221 222222 1 1122222211 1 01223445555555555 33333222
Q ss_pred -HHhc-CCCCChHH--HHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCC----HHHHHHHHH--HHHccCcHHHHHHHHH
Q 012365 207 -LDAE-IPVKSRSE--VKSALVSALASHGRTSDAIIVYEEIKEAGCNLE----PRAVIALIE--HLNSEGELNRLIQLLE 276 (465)
Q Consensus 207 -~~~~-~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~--~~~~~g~~~~a~~~~~ 276 (465)
.-.. ..+.+... .+..|+......|+.++|...++++..-...++ -.+-...+. .....|+.+.+.....
T Consensus 604 ~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~ 683 (894)
T COG2909 604 IEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLL 683 (894)
T ss_pred chhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHH
Confidence 2111 11222221 133677888899999999999998876543332 222222222 2355677777777666
Q ss_pred HHcC
Q 012365 277 EVHD 280 (465)
Q Consensus 277 ~~~~ 280 (465)
+-..
T Consensus 684 ~s~~ 687 (894)
T COG2909 684 KSGD 687 (894)
T ss_pred hccC
Confidence 5433
No 380
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=62.22 E-value=1.1e+02 Score=28.41 Aligned_cols=54 Identities=15% Similarity=0.053 Sum_probs=34.4
Q ss_pred HHHcCCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHH--HccCcHHHHHHHHHHHcC
Q 012365 226 ALASHGRTSDAIIVYEEIKEAGCNLEPR--AVIALIEHL--NSEGELNRLIQLLEEVHD 280 (465)
Q Consensus 226 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~--~~~g~~~~a~~~~~~~~~ 280 (465)
.+.+.+++..|.++|+.+..+ ++++.. .+..+..+| ...-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 444677888888888888776 444443 344555555 344566677777776654
No 381
>PF13934 ELYS: Nuclear pore complex assembly
Probab=62.21 E-value=98 Score=26.25 Aligned_cols=109 Identities=12% Similarity=0.130 Sum_probs=60.5
Q ss_pred CCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH
Q 012365 40 GELVPSTETINSILHACE--ESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTAS 117 (465)
Q Consensus 40 ~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 117 (465)
.++++ .|...+.++. ..+++++|.+.+. ...+.|+ .-..++.++...|+.+.|..+++...-.. .+..
T Consensus 73 f~ip~---~~~~~~~g~W~LD~~~~~~A~~~L~---~ps~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~ 142 (226)
T PF13934_consen 73 FGIPP---KYIKFIQGFWLLDHGDFEEALELLS---HPSLIPW--FPDKILQALLRRGDPKLALRYLRAVGPPL--SSPE 142 (226)
T ss_pred hCCCH---HHHHHHHHHHHhChHhHHHHHHHhC---CCCCCcc--cHHHHHHHHHHCCChhHHHHHHHhcCCCC--CCHH
Confidence 34553 3445566644 3466777776662 2222222 22246777777888888888887765321 1222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhC
Q 012365 118 MYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS 162 (465)
Q Consensus 118 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 162 (465)
.-..++.. ..++.+.+|..+-+...+.. ....+..++..+-
T Consensus 143 ~~~~~~~~-La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 143 ALTLYFVA-LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 33333444 66788888888777765421 1344555555443
No 382
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=61.11 E-value=35 Score=22.12 Aligned_cols=56 Identities=7% Similarity=0.033 Sum_probs=42.8
Q ss_pred CCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChh
Q 012365 357 LPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRK 413 (465)
Q Consensus 357 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 413 (465)
+.|+...++.++..+++..-.+.+...+.+..+.|. -+..+|.--++.+++..-+.
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaReQF~~ 59 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAREQFLK 59 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHH
Confidence 346667789999999999999999999999999884 56777777777776654433
No 383
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=61.09 E-value=69 Score=24.13 Aligned_cols=63 Identities=16% Similarity=0.138 Sum_probs=42.7
Q ss_pred CCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHhc
Q 012365 356 GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNV-LSYLWMYKAFLASGNRKSASKLLSK 421 (465)
Q Consensus 356 ~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 421 (465)
..+-|......-+. |+. ..+.+.++|+.|.+.|+--.. ..|......+...|++++|.++++.
T Consensus 61 ~Y~nD~RylkiWi~-ya~--~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 61 RYKNDERYLKIWIK-YAD--LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp GGTT-HHHHHHHHH-HHT--TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hhcCCHHHHHHHHH-HHH--HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 44555554444443 222 233899999999988765444 4788888888999999999999864
No 384
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=60.39 E-value=10 Score=28.52 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=14.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012365 95 KDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124 (465)
Q Consensus 95 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 124 (465)
|.-.+|-.+|++|.+.|-+|| .|+.|+.
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLK 136 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHH
Confidence 334455566666666665554 3555544
No 385
>PRK11619 lytic murein transglycosylase; Provisional
Probab=60.35 E-value=2e+02 Score=29.14 Aligned_cols=337 Identities=9% Similarity=0.001 Sum_probs=166.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 012365 52 ILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131 (465)
Q Consensus 52 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 131 (465)
.+..+.+.+++....+++. . .+.+...-.....+....|+.++|......+=-.| .......+.++..+.+.|.
T Consensus 105 ~l~~La~~~~w~~~~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 105 FVNELARREDWRGLLAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGK 178 (644)
T ss_pred HHHHHHHccCHHHHHHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCC
Confidence 4445566677776666331 1 14455555666677777787776665555543333 2345566667777666555
Q ss_pred HHHHHHHHHHH---HHCC-----------CCCC-HHHHHHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH--HH
Q 012365 132 VQGALMVLKEM---EQAN-----------VKPD-SQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINA--YT 194 (465)
Q Consensus 132 ~~~a~~~~~~m---~~~~-----------~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 194 (465)
+.... ++.+| ...| +.++ ......++....+...+...... +.++...-..++.+ -.
T Consensus 179 lt~~d-~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rl 252 (644)
T PRK11619 179 QDPLA-YLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFASV 252 (644)
T ss_pred CCHHH-HHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHH
Confidence 43322 12222 1221 1111 11122222222222222222111 12232111111111 22
Q ss_pred hcCCHHHHHHHHHHhcCCCC----ChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHH
Q 012365 195 TCGEFEKARQVVLDAEIPVK----SRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNR 270 (465)
Q Consensus 195 ~~g~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 270 (465)
...+.+.|..++........ ....++..+.......+...++...++...... .|......-+..-...++++.
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHH
Confidence 34456888888876322221 111224445444444433566666666654333 233444444445558888888
Q ss_pred HHHHHHHHcCCCC-CccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhh--hHHh
Q 012365 271 LIQLLEEVHDPDY-WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQI--GLDL 347 (465)
Q Consensus 271 a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--A~~~ 347 (465)
+...+..|..... ..........+....|+.++|...|+.+.. + .+++.++..--. +.. -.+.. .-..
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~--~~fYG~LAa~~L--g~~--~~~~~~~~~~~ 401 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---Q--RGFYPMVAAQRL--GEE--YPLKIDKAPKP 401 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---C--CCcHHHHHHHHc--CCC--CCCCCCCCCch
Confidence 8888888754322 223345666676678999999999998754 1 345555443111 100 00000 0000
Q ss_pred HHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhcc
Q 012365 348 LQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422 (465)
Q Consensus 348 ~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 422 (465)
. . .....| -..-+..+...|....|...|..+.+. .+......+...-.+.|.++.+.....+.
T Consensus 402 -~--~-~~~~~~----~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 402 -D--S-ALTQGP----EMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred -h--h-hhccCh----HHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 0 0 000011 111234456778888999888888874 34445555555555778777777666543
No 386
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=60.23 E-value=30 Score=22.40 Aligned_cols=52 Identities=6% Similarity=0.093 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 012365 7 ITPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEES 59 (465)
Q Consensus 7 ~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 59 (465)
+.|+...++.++..+++..-.+.++..+.+..+.|.- +..+|..-++.+++.
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLARE 55 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH
Confidence 3466777888888888888888888888888877753 666776666666553
No 387
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=59.42 E-value=56 Score=22.53 Aligned_cols=42 Identities=17% Similarity=0.285 Sum_probs=23.2
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 012365 67 RIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLK 108 (465)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 108 (465)
++|+.....|+..|+..|..++....-+=.++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555554
No 388
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=58.99 E-value=64 Score=23.09 Aligned_cols=86 Identities=9% Similarity=0.045 Sum_probs=60.4
Q ss_pred cCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 012365 25 LKVHVALDVVEQMVQGELVPSTETINSIL--HACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYS 102 (465)
Q Consensus 25 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 102 (465)
...++|..+-+.+...+-. .-...+| ..+.+.|++++|..+.+.. ..||...|-+|-. .+.|..+++..
T Consensus 19 HcHqEA~tIAdwL~~~~~~---~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~ 89 (115)
T TIGR02508 19 HCHQEANTIADWLHLKGES---EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALES 89 (115)
T ss_pred hHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHH
Confidence 3467888888887765422 2223344 4567889999999887654 3688888877754 67888888888
Q ss_pred HHHHHHHcCCCCCHHHHH
Q 012365 103 LLDDLKEMNLMPTASMYN 120 (465)
Q Consensus 103 ~~~~m~~~~~~~~~~~~~ 120 (465)
-+.+|...| .|....|.
T Consensus 90 rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 90 RLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHHhCC-CHHHHHHH
Confidence 888888877 46555553
No 389
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=58.77 E-value=1.6e+02 Score=27.67 Aligned_cols=65 Identities=14% Similarity=0.054 Sum_probs=44.1
Q ss_pred CchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 012365 339 PDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLAS 409 (465)
Q Consensus 339 ~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 409 (465)
|++.+|.+.+++.. -..--....+.+++.+.-+.|+-...+.++++..+.| ..|-+.|-.+|.|.
T Consensus 523 GdisEA~~CikeLg--mPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQMtkGf~RV 587 (645)
T KOG0403|consen 523 GDISEACHCIKELG--MPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQMTKGFERV 587 (645)
T ss_pred cchHHHHHHHHHhC--CCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHHhhhhhhhh
Confidence 88888888877654 2222345677788888888888777777777666654 45666677766654
No 390
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=58.52 E-value=1.6e+02 Score=27.45 Aligned_cols=55 Identities=22% Similarity=0.280 Sum_probs=39.0
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHHC
Q 012365 90 LNVKIKDFDSAYSLLDDLKEMNLMPTAS--MYNAIMAGYF--RKKDVQGALMVLKEMEQA 145 (465)
Q Consensus 90 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~--~~g~~~~a~~~~~~m~~~ 145 (465)
.+.+.+++..|.++|+.+... ++++.. .+..+..+|. ...++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345778999999999998876 555554 4455555554 367788888888887654
No 391
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=58.46 E-value=64 Score=25.06 Aligned_cols=44 Identities=14% Similarity=0.049 Sum_probs=18.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 012365 87 MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130 (465)
Q Consensus 87 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 130 (465)
++..+...++.-.|.++++++.+.+...+..|--.-++.+...|
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 33334444444444555555444433333333333333444443
No 392
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=58.39 E-value=37 Score=23.74 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=21.8
Q ss_pred CCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCCh
Q 012365 393 PYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHV 429 (465)
Q Consensus 393 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 429 (465)
|.|......+...+...|++++|++.+-++.+.++.|
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 5555666666666666666666666666666666555
No 393
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=58.26 E-value=1.7e+02 Score=27.79 Aligned_cols=101 Identities=15% Similarity=0.189 Sum_probs=53.2
Q ss_pred CCchhhhHHhHHHHHhhcCCCCcHHH----HHHHHHHhHhhhh-hhHH---HHHHHHHHHcCCCCCh-hHHHHHHHHH--
Q 012365 338 PPDVQIGLDLLQFIKDELGLPPSRKC----LDFLLGACVNARD-LKRA---HLIWKEYENAGLPYNV-LSYLWMYKAF-- 406 (465)
Q Consensus 338 ~~~~~~A~~~~~~m~~~~~~~p~~~~----~~~ll~~~~~~g~-~~~A---~~~~~~m~~~g~~p~~-~~~~~l~~~~-- 406 (465)
.|++++|+.++-..+ .++||..- |..+++.+-...+ -... .+-++-..+. +..|. ..|..-..++
T Consensus 711 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 786 (831)
T PRK15180 711 EGRLDEALSVLISLK---RIEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKL-LVFDSENAYALKYAALNA 786 (831)
T ss_pred cccHHHHHHHHHhhh---ccCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhh-eeeccchHHHHHHHHhhH
Confidence 689999999988887 78898752 3333333322111 0000 1111111111 11111 1222111111
Q ss_pred HhcCChhhHHHHHhccCC-CCCC--hhHHHHHHHhhccc
Q 012365 407 LASGNRKSASKLLSKMPK-DDPH--VRFVIQACKQTYTI 442 (465)
Q Consensus 407 ~~~g~~~~A~~~~~~m~~-~~~~--~~~~l~~~~~~~~~ 442 (465)
....++..|.++|+++.+ +||+ +..-+..|..+...
T Consensus 787 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (831)
T PRK15180 787 MHLRDYTQALQYWQRLEKVNGPTEPVTRQISTCITALQK 825 (831)
T ss_pred hHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHhh
Confidence 234688999999999886 4564 46678888876543
No 394
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=58.07 E-value=1.3e+02 Score=26.37 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=24.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 012365 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFS 155 (465)
Q Consensus 122 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 155 (465)
+.+-.++.+++++|...+.+....|+..|..+.+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~n 42 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLN 42 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhh
Confidence 4455667788888888888888888777665543
No 395
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=57.80 E-value=1.8e+02 Score=27.88 Aligned_cols=250 Identities=10% Similarity=0.035 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHH
Q 012365 26 KVHVALDVVEQMVQGELVPSTETINSILHACEES------YEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDS 99 (465)
Q Consensus 26 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 99 (465)
+.+...++|+...+ ..|+...|+..|..|-.. ........+++...+.+ ......+......+..-....+
T Consensus 297 k~s~~~~v~ee~v~--~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~-~l~~~~~~~ys~~~l~~~t~~~ 373 (568)
T KOG2396|consen 297 KESRCCAVYEEAVK--TLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELK-LLSECLYKQYSVLLLCLNTLNE 373 (568)
T ss_pred hHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhc-ccccchHHHHHHHHHHHhccch
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HhhCChhHHHHHHHHHHH
Q 012365 100 AYSLLDDLKEMNLMPTASMYNAIMAGYFRK--KDVQGALMVLKEMEQANVKPDSQTFSYLI-HNCSNEEDIIKYYEQLKS 176 (465)
Q Consensus 100 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~~~~~~~~ 176 (465)
+...-..+...++.-|...|-.-+....+. .---.-.++|...+..-..+-...++... ...........++..+.+
T Consensus 374 ~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s 453 (568)
T KOG2396|consen 374 AREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLS 453 (568)
T ss_pred HhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHH
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHH---HHHHcCCChhHHHHHHHHHHHcCCCCCHH
Q 012365 177 AGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALV---SALASHGRTSDAIIVYEEIKEAGCNLEPR 253 (465)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 253 (465)
.+..-....-+.+++.+.+.|-..+|..++..+...|++....|.-+| ......| ..-+.++++.|...-- .|+.
T Consensus 454 ~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg-~d~~ 531 (568)
T KOG2396|consen 454 VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG-ADSD 531 (568)
T ss_pred hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC-CChH
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHcC
Q 012365 254 AVIALIEHLNSEGELNRLIQLLEEVHD 280 (465)
Q Consensus 254 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 280 (465)
.|...+.-=...|..+.+-.++....+
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHH
No 396
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=55.73 E-value=33 Score=30.16 Aligned_cols=39 Identities=13% Similarity=0.212 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 012365 220 KSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258 (465)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 258 (465)
|+.-|..-.+.|++++|+.++++.++.|+.--..+|..-
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 788899999999999999999999998876555555433
No 397
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.32 E-value=1.3e+02 Score=25.57 Aligned_cols=63 Identities=19% Similarity=0.332 Sum_probs=34.9
Q ss_pred hHhhHhhhcCChhHHHHHHHHHHHcccc-hhHHHH---HHHHHHHHhhhcCCCCchhhhHHhHHHHH
Q 012365 290 RLILHCVRFKQLSSATDLLKQLKDKFKD-DEMAME---YHFSEIFCQIATTDPPDVQIGLDLLQFIK 352 (465)
Q Consensus 290 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~---~~l~~~~~~~~~~~~~~~~~A~~~~~~m~ 352 (465)
.+..+-...+++..|+++|+++...... +..-|. .++...++.++..+.-+...|++-++++.
T Consensus 159 KvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 159 KVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 3444556788999999999988774222 222222 24455555554333334444555555443
No 398
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=55.08 E-value=1.5e+02 Score=26.27 Aligned_cols=114 Identities=17% Similarity=0.259 Sum_probs=66.1
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChh
Q 012365 86 SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE 165 (465)
Q Consensus 86 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 165 (465)
.++....+.++.......++.+. ....-...+..+...|++..|++++.+..+. + -+...|+++=.--.+..
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l-~~l~~~~c~~~L~~~L~ 174 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQL-L-EELKGYSCVRHLSSQLQ 174 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-H-HhcccchHHHHHhHHHH
Confidence 34455555566666666666555 3344556677888999999999999887752 1 01111111111112223
Q ss_pred HHHHHHHHHHH-----cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012365 166 DIIKYYEQLKS-----AGGQITKYVFMALINAYTTCGEFEKARQVVL 207 (465)
Q Consensus 166 ~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 207 (465)
+.....+.+.+ .-..-|+..|..++.+|.-.|+...+.+-+.
T Consensus 175 e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~ 221 (291)
T PF10475_consen 175 ETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQ 221 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 32222222221 1125688999999999999998777665544
No 399
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=54.73 E-value=88 Score=27.68 Aligned_cols=57 Identities=16% Similarity=0.250 Sum_probs=33.3
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhC
Q 012365 101 YSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCS 162 (465)
Q Consensus 101 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 162 (465)
.++|+.|...++.|.-.++.-+.-.+.+.-.+.+.+.+++.+... ..-|..++..|+
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHH
Confidence 456666666666666666655555566666666666666666532 222555555544
No 400
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=54.62 E-value=81 Score=22.91 Aligned_cols=79 Identities=13% Similarity=0.027 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 012365 26 KVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLD 105 (465)
Q Consensus 26 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 105 (465)
..++|..+.+.+.+.+.. ....--+-+..+.+.|++++| +..-... -.||...|-+|- -.+.|-.+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~-~~pdL~p~~AL~--a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEA---LLLPQCH-CYPDLEPWAALC--AWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHH---HHHHTTS---GGGHHHHHHH--HHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHH---HHhcccC-CCccHHHHHHHH--HHhhccHHHHHHHHH
Confidence 345555555555554321 111111122234455565555 1111111 234555444432 245555555555555
Q ss_pred HHHHcC
Q 012365 106 DLKEMN 111 (465)
Q Consensus 106 ~m~~~~ 111 (465)
++...|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 555443
No 401
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=54.03 E-value=1.2e+02 Score=24.61 Aligned_cols=41 Identities=7% Similarity=0.170 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcC
Q 012365 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAG 178 (465)
Q Consensus 133 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 178 (465)
++|.+.|++..+ ..|+..+|..-+..+.+ +.+++.++.+.+
T Consensus 97 ~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~k---ap~lh~e~~~~~ 137 (186)
T PF06552_consen 97 EKATEYFQKAVD--EDPNNELYRKSLEMAAK---APELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHT---HHHHHHHHHHSS
T ss_pred HHHHHHHHHHHh--cCCCcHHHHHHHHHHHh---hHHHHHHHHHHH
Confidence 344444444443 36777777777666543 344444444443
No 402
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=53.99 E-value=2.5e+02 Score=28.29 Aligned_cols=180 Identities=13% Similarity=0.114 Sum_probs=100.1
Q ss_pred HHHHHHHHHHH-hCCCCCCH--HHHHHHHHHHH-hcCCHHHHHHHHHHHhhCCCCCCHH-----HHHHHHHHHhccCCHH
Q 012365 28 HVALDVVEQMV-QGELVPST--ETINSILHACE-ESYEFNLVRRIYPMICHHNLKPNSE-----TFRSMISLNVKIKDFD 98 (465)
Q Consensus 28 ~~A~~~~~~m~-~~~~~p~~--~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~ 98 (465)
..|+..++.+. +..++|.. .++-.+...+. ...+++.|+..+++.....-+++.. ....++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 35677777777 34444433 34444555554 6789999999999876543233322 2335566666666655
Q ss_pred HHHHHHHHHHHcC----CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHhh-----CChh
Q 012365 99 SAYSLLDDLKEMN----LMPTASMYNAI-MAGYFRKKDVQGALMVLKEMEQAN---VKPDSQTFSYLIHNC-----SNEE 165 (465)
Q Consensus 99 ~a~~~~~~m~~~~----~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~-----~~~~ 165 (465)
|...+++..+.- ..+=...|..+ +..+...++...|.+.++.+...- ..|-...+..++.+. ...+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 888888765431 11222233333 333333489999999999987532 233344444444442 2234
Q ss_pred HHHHHHHHHHHcC---------CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHH
Q 012365 166 DIIKYYEQLKSAG---------GQITKYVFMALINAY--TTCGEFEKARQVVLD 208 (465)
Q Consensus 166 ~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~ 208 (465)
+..+..+.+.... ..|-..++..+++.+ ...|+++.+...+++
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~ 250 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQ 250 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444444332211 233456666666554 467776666665543
No 403
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=53.82 E-value=1.5e+02 Score=30.13 Aligned_cols=35 Identities=3% Similarity=-0.043 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHhccCCCCCChhHHHH
Q 012365 399 YLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQ 434 (465)
Q Consensus 399 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l~ 434 (465)
...|+.++. .|+...++.+++++...+..+..++.
T Consensus 249 If~LldAL~-~~d~~~al~~l~~L~~~G~d~~~~l~ 283 (709)
T PRK08691 249 LYELLTGII-NQDGAALLAKAQEMAACAVGFDNALG 283 (709)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 333444333 36677777777777777766544333
No 404
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.95 E-value=1.2e+02 Score=31.45 Aligned_cols=36 Identities=11% Similarity=0.030 Sum_probs=18.2
Q ss_pred hhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 012365 373 NARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLA 408 (465)
Q Consensus 373 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 408 (465)
.....+-+..+++.+....-.++....+.++..|++
T Consensus 603 ~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 603 KSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 444555555556655544334444555555554443
No 405
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=52.47 E-value=1.2e+02 Score=29.57 Aligned_cols=135 Identities=11% Similarity=0.054 Sum_probs=83.4
Q ss_pred CCHHHHHHHHHHHhcc--cCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 012365 9 PSSASYKKLITYSCDL--LKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS 86 (465)
Q Consensus 9 p~~~~y~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 86 (465)
|+..+-.+++.-+... -..+-+-.++..|... +.|-..+.|...--....|+...|...+....-..-....+..-.
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~-~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~ 647 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINKP-NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVN 647 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCC-CCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHH
Confidence 5566666665555443 2344555666666543 344444444322223346888888887776554321122233444
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 012365 87 MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145 (465)
Q Consensus 87 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 145 (465)
|.....+.|....|-.++.+-.... ...+.++-.+.+++....++++|++.|++..+.
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 5566666777888888887766554 345567778888999999999999999988765
No 406
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=51.66 E-value=41 Score=33.32 Aligned_cols=63 Identities=16% Similarity=0.287 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 012365 44 PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLK 108 (465)
Q Consensus 44 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 108 (465)
.+......++..|.+.|-.+.+.++.+.+-..-+ ...-|...+..+.++|+...+..+-+.+.
T Consensus 403 ~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 403 DTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp -SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3555566666777777777777777766554422 23445566666667776666555544443
No 407
>PHA03100 ankyrin repeat protein; Provisional
Probab=50.04 E-value=2.2e+02 Score=27.45 Aligned_cols=15 Identities=20% Similarity=0.076 Sum_probs=8.1
Q ss_pred hcCChhhHHHHHhcc
Q 012365 408 ASGNRKSASKLLSKM 422 (465)
Q Consensus 408 ~~g~~~~A~~~~~~m 422 (465)
|....+.|...++..
T Consensus 428 r~~~i~~~~~~~~~~ 442 (480)
T PHA03100 428 RKKLIKKIIKKLNNL 442 (480)
T ss_pred HHHHHHHHHHHHHhh
Confidence 444455666665553
No 408
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=49.93 E-value=3.2e+02 Score=28.41 Aligned_cols=226 Identities=15% Similarity=0.059 Sum_probs=117.0
Q ss_pred HHHhcCCHHHHHHHHHHh----cCCC----CChHHHHHHHHH-HHHcCCChhHHHHHHHHHHHc----CCCCCHHHHHHH
Q 012365 192 AYTTCGEFEKARQVVLDA----EIPV----KSRSEVKSALVS-ALASHGRTSDAIIVYEEIKEA----GCNLEPRAVIAL 258 (465)
Q Consensus 192 ~~~~~g~~~~a~~~~~~~----~~~~----~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~l 258 (465)
......++++|..++.+. ..+. ......|+.+-. .....|+++.|.++.+..... -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 345677888888888762 2211 111112444432 234568888888887776543 233455566777
Q ss_pred HHHHHccCcHHHHHHHHHHHcCCCCCccc-----hhhH--hhHhhhcCC--hhHHHHHHHHHHHc---ccch----hHHH
Q 012365 259 IEHLNSEGELNRLIQLLEEVHDPDYWMDG-----CCRL--ILHCVRFKQ--LSSATDLLKQLKDK---FKDD----EMAM 322 (465)
Q Consensus 259 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~--~~~a~~~~~~~~~~---~~~~----~~~~ 322 (465)
..+..-.|++++|..+.++..+..-..+. +..+ ...+...|+ +.+.+..|...... ..|- ....
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 78888889999999888877654222222 2221 122345553 33444445444431 1111 1111
Q ss_pred HHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHH--HHHHHHhHhhhhhhHHHHHHHHHHHcCCCC----Ch
Q 012365 323 EYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCL--DFLLGACVNARDLKRAHLIWKEYENAGLPY----NV 396 (465)
Q Consensus 323 ~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~--~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p----~~ 396 (465)
..++.+.++ + .+...++..-++--. .....|-...+ ..|+......|+.++|...++++......+ +.
T Consensus 584 ~~ll~~~~r-~----~~~~~ear~~~~~~~-~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 584 AQLLRAWLR-L----DLAEAEARLGIEVGS-VYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred HHHHHHHHH-H----hhhhHHhhhcchhhh-hcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
Confidence 111111111 1 122233332232222 12222322222 256777888999999999999998653333 22
Q ss_pred hHHHHHHH--HHHhcCChhhHHHHHhccC
Q 012365 397 LSYLWMYK--AFLASGNRKSASKLLSKMP 423 (465)
Q Consensus 397 ~~~~~l~~--~~~~~g~~~~A~~~~~~m~ 423 (465)
.+-...+. .....|+.++|.....+-.
T Consensus 658 ~a~~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 658 LAAAYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred HHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 23233333 2345688888887777643
No 409
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=49.91 E-value=2.1e+02 Score=26.38 Aligned_cols=128 Identities=15% Similarity=0.087 Sum_probs=66.7
Q ss_pred CCCCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhh-cCCCCchhhhHHhHHHHHhhcCCC
Q 012365 280 DPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIA-TTDPPDVQIGLDLLQFIKDELGLP 358 (465)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~A~~~~~~m~~~~~~~ 358 (465)
+.+..+++...+...+...|+...|.+++++..-. +...+...|..+. ....|... + .....
T Consensus 35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~-------~e~~~~~~F~~~~~~~~~g~~r--------L--~~~~~ 97 (360)
T PF04910_consen 35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFA-------FERAFHPSFSPFRSNLTSGNCR--------L--DYRRP 97 (360)
T ss_pred HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------HHHHHHHHhhhhhcccccCccc--------c--CCccc
Confidence 34555666666777777788888887777765431 1111111110000 00001000 0 11122
Q ss_pred CcHHHHHHH---HHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHH-HhcCChhhHHHHHhccCC
Q 012365 359 PSRKCLDFL---LGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAF-LASGNRKSASKLLSKMPK 424 (465)
Q Consensus 359 p~~~~~~~l---l~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~m~~ 424 (465)
-|...|-++ +..+.+.|-+..|.++.+-+...+-.-|+.....+|+.| .++++++--.++.+....
T Consensus 98 eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 98 ENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred cchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 244444443 455667778888888888887764333566555566654 356677766666665443
No 410
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=49.91 E-value=84 Score=21.71 Aligned_cols=42 Identities=12% Similarity=0.083 Sum_probs=20.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012365 102 SLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME 143 (465)
Q Consensus 102 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 143 (465)
++|+-....|+..|...|..++....-+=-++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444444444444455555554444444444444444444443
No 411
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=49.47 E-value=1.7e+02 Score=25.01 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=24.1
Q ss_pred CCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCCh
Q 012365 358 PPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNV 396 (465)
Q Consensus 358 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 396 (465)
.|.+.....++..| ..+++++|.+++.++.+.|+.|..
T Consensus 236 ~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 236 EPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred CCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHH
Confidence 46666666666654 346777777777777777765543
No 412
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=49.12 E-value=95 Score=22.63 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012365 118 MYNAIMAGYFRKKDVQGALMVLKEMEQ 144 (465)
Q Consensus 118 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 144 (465)
-|..|+..|...|.+++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 388889999999999999999988876
No 413
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=48.94 E-value=1.6e+02 Score=24.74 Aligned_cols=69 Identities=12% Similarity=0.040 Sum_probs=46.1
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 012365 42 LVPS-TETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMN 111 (465)
Q Consensus 42 ~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 111 (465)
+.|+ +..||-|.--+...|+++.|.+.|+...+....-+-...|.-|. +.--|++.-|.+=|...-+.+
T Consensus 94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D 163 (297)
T COG4785 94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDD 163 (297)
T ss_pred cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcC
Confidence 4454 46777777778889999999999999988752222223333333 334588988888777665543
No 414
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=48.92 E-value=43 Score=18.08 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHHHcCCCCChhHHHHHH
Q 012365 376 DLKRAHLIWKEYENAGLPYNVLSYLWMY 403 (465)
Q Consensus 376 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 403 (465)
.++.|..+|+..+.. .|++.+|....
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHHHHH
Confidence 456777777777763 47776665443
No 415
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=48.55 E-value=1.8e+02 Score=28.21 Aligned_cols=61 Identities=21% Similarity=0.277 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHH--HHHHHHHHHHcCCChhHHHHHHHHHHHc
Q 012365 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSE--VKSALVSALASHGRTSDAIIVYEEIKEA 246 (465)
Q Consensus 186 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 246 (465)
...++.-|.+.+++++|..++..|.-....... ..+.+.+.+.+..--++....++.+...
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 345777899999999999999876554432221 2445555666665455555555555544
No 416
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=47.95 E-value=1.8e+02 Score=24.92 Aligned_cols=58 Identities=16% Similarity=0.113 Sum_probs=37.9
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HccCcHHHHHHHHHHHc
Q 012365 222 ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL-NSEGELNRLIQLLEEVH 279 (465)
Q Consensus 222 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~ 279 (465)
.++..+-+.|+++++...+.++...+...+..--+.|..+| ..-|....+++++..+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 46677778889999999999888887666666666666665 23345555666665554
No 417
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=47.63 E-value=1.6e+02 Score=29.33 Aligned_cols=75 Identities=9% Similarity=0.037 Sum_probs=45.1
Q ss_pred HHHHHHhcccCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHhhCCCCCCHHHHHHH
Q 012365 16 KLITYSCDLLKVHVALDVVEQMVQG--ELVPSTETINSILHACEESYEFN------LVRRIYPMICHHNLKPNSETFRSM 87 (465)
Q Consensus 16 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 87 (465)
+|+.+|..+|++.++.++++.+... |-+.=...||..++...+.|.++ .+.+++++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 6777777788888887777777543 22223456666777777777643 2333343332 34466677776
Q ss_pred HHHHhc
Q 012365 88 ISLNVK 93 (465)
Q Consensus 88 i~~~~~ 93 (465)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665444
No 418
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=47.41 E-value=72 Score=29.90 Aligned_cols=182 Identities=15% Similarity=0.206 Sum_probs=81.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHH-----------HHHHHcCCCCC-HHHHH
Q 012365 189 LINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY-----------EEIKEAGCNLE-PRAVI 256 (465)
Q Consensus 189 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-----------~~m~~~~~~p~-~~~~~ 256 (465)
+..-+...|.++.|.+++.+ +....+....-..++..|..+.-+-.+..-+ ++--..+..|- ..++.
T Consensus 124 laadhvAAGsFetAm~LLnr-QiGivnF~PLk~~Fl~~y~~s~~~l~~~~~~p~l~~~~~r~~~~~~~~~~lP~i~~~l~ 202 (422)
T PF06957_consen 124 LAADHVAAGSFETAMQLLNR-QIGIVNFEPLKPLFLEVYQASRTYLPALPSLPPLPSYIRRNWDESNPKNGLPAIPLSLS 202 (422)
T ss_dssp SHHHHHHCT-HHHHHHHHHH-HC-B---GGGHHHHHHHHCCTEEEE-SSTTTS-EEEEEBCTTTTSSSCCG-BB----HH
T ss_pred cHHHHHHhCCHHHHHHHHHH-HhCccccHHHHHHHHHHHHhhceecccCCCCCCccccccCCccccccccCCCcCcCCHH
Confidence 45567889999999999987 2222222222345666665432111110000 00000111222 23333
Q ss_pred HHHH----H--HHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHH
Q 012365 257 ALIE----H--LNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIF 330 (465)
Q Consensus 257 ~ll~----~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 330 (465)
.|.. + +...|++.+|+..|+.+...- .+.......+.+++.+++...++ | ++. +-
T Consensus 203 ~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i--------~l~vv~~~~E~~e~~eli~icrE--------Y--ilg-l~ 263 (422)
T PF06957_consen 203 SLEERLKEGYKLFTAGKFEEAIEIFRSILHSI--------PLLVVESREEEDEAKELIEICRE--------Y--ILG-LS 263 (422)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH--------HC--BSSCHHHHHHHHHHHHHHH--------H--HHH-HH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--------heeeecCHHHHHHHHHHHHHHHH--------H--HHH-HH
Confidence 3332 2 366788889988888775311 00011122233444444433322 0 000 00
Q ss_pred HhhhcCC--CC---chhhhHHhHHHHHhhcCCCCcHH--HHHHHHHHhHhhhhhhHHHHHHHHHHHcC
Q 012365 331 CQIATTD--PP---DVQIGLDLLQFIKDELGLPPSRK--CLDFLLGACVNARDLKRAHLIWKEYENAG 391 (465)
Q Consensus 331 ~~~~~~~--~~---~~~~A~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 391 (465)
.-..+.. .. +..+.+++-.-+- ..+++|... ++..-|..+.+.+++..|-.+-+++++.+
T Consensus 264 iEl~Rr~l~~~~~~~~kR~lELAAYFT-hc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~ 330 (422)
T PF06957_consen 264 IELERRELPKDPVEDQKRNLELAAYFT-HCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELN 330 (422)
T ss_dssp HHHHHCTS-TTTHHHHHHHHHHHHHHC-CS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT-
T ss_pred HHHHHHhccccchhhHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcC
Confidence 0001110 01 1223334444444 456666543 45667888889999999999999999864
No 419
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=47.06 E-value=44 Score=24.52 Aligned_cols=45 Identities=16% Similarity=0.031 Sum_probs=26.1
Q ss_pred HHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 012365 17 LITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYE 61 (465)
Q Consensus 17 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 61 (465)
++..+...+..-.|.++++.+.+.+..++..|.-..++.+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 444555555556666666666666655555555555555555554
No 420
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=46.91 E-value=75 Score=22.29 Aligned_cols=53 Identities=13% Similarity=0.107 Sum_probs=33.5
Q ss_pred HhhhhhhHHHHHHHHHHH----cCCCCC----hhHHHHHHHHHHhcCChhhHHHHHhccCC
Q 012365 372 VNARDLKRAHLIWKEYEN----AGLPYN----VLSYLWMYKAFLASGNRKSASKLLSKMPK 424 (465)
Q Consensus 372 ~~~g~~~~A~~~~~~m~~----~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 424 (465)
.+.|++..|.+.+.+..+ .+..+. ....-.+.......|++++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 466788887655555543 222221 12333455567788999999999998774
No 421
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.43 E-value=2.8e+02 Score=26.78 Aligned_cols=60 Identities=7% Similarity=-0.083 Sum_probs=27.9
Q ss_pred CchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhh------HHHHHHHHHHHcCCCCChhHH
Q 012365 339 PDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLK------RAHLIWKEYENAGLPYNVLSY 399 (465)
Q Consensus 339 ~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~------~A~~~~~~m~~~g~~p~~~~~ 399 (465)
++++.|+.++..|. ..|..|....-..+..++-..|..+ .+..+++...+.|+|-.....
T Consensus 257 ~d~~~Al~~l~~ll-~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~~i~~~e~~~~l 322 (472)
T PRK14962 257 GDVKRVFTVLDDVY-YSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNILREIKFAEEKRLV 322 (472)
T ss_pred CCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhCCcchHHHH
Confidence 56666666666666 5555555443333333333333222 233344444445555444433
No 422
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=45.99 E-value=2.3e+02 Score=25.64 Aligned_cols=125 Identities=10% Similarity=-0.014 Sum_probs=82.0
Q ss_pred hcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHH-HHHHHHHHhHhhh
Q 012365 297 RFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRK-CLDFLLGACVNAR 375 (465)
Q Consensus 297 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~g 375 (465)
..+-++++..++++......|..+.....+..+.........-++..-..+|+-.. .+.|+++ +.|--+ +..+..
T Consensus 268 ~r~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~---~~apSPvV~LNRAV-Ala~~~ 343 (415)
T COG4941 268 DRALIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALE---QAAPSPVVTLNRAV-ALAMRE 343 (415)
T ss_pred hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHH---HhCCCCeEeehHHH-HHHHhh
Confidence 34556788888888887777777777777777776666666677888888888777 4555543 344333 234444
Q ss_pred hhhHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCChhhHHHHHhccCCC
Q 012365 376 DLKRAHLIWKEYENAG-LPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKD 425 (465)
Q Consensus 376 ~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 425 (465)
-...++.+.+-+...+ +.--...+..-...+.+.|+.++|..-|++....
T Consensus 344 Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 344 GPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred hHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 5666677777666542 1112223344445677899999999999987653
No 423
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=45.66 E-value=1.5e+02 Score=27.71 Aligned_cols=60 Identities=18% Similarity=0.212 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhcCCCCC--------hHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 012365 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKS--------RSEVKSALVSALASHGRTSDAIIVYEEIK 244 (465)
Q Consensus 185 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 244 (465)
+...|++.++-.||+..|+++++.+....+. ..+++.-+.-+|...+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788899999999999999865443221 22246677888899999999999998764
No 424
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=45.49 E-value=2.3e+02 Score=25.44 Aligned_cols=60 Identities=15% Similarity=0.030 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 012365 47 ETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKE 109 (465)
Q Consensus 47 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 109 (465)
..-..++....+.|+.+....+++..... ++......++.+.+...+.+...++++....
T Consensus 170 dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 170 DLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp HHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 33333444444444444333333333322 2344444555555555555555555544444
No 425
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=45.37 E-value=1.8e+02 Score=24.37 Aligned_cols=75 Identities=12% Similarity=-0.031 Sum_probs=45.0
Q ss_pred HHHHHHHHhHhhhh-------hhHHHHHHHHHHHcCCCC----Ch-hHHHHHHHHHHhcCChhhHHHHHhccCCCCCC--
Q 012365 363 CLDFLLGACVNARD-------LKRAHLIWKEYENAGLPY----NV-LSYLWMYKAFLASGNRKSASKLLSKMPKDDPH-- 428 (465)
Q Consensus 363 ~~~~ll~~~~~~g~-------~~~A~~~~~~m~~~g~~p----~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-- 428 (465)
.+--+.+.|...|+ ...|.+.|.+..+..-.| +. ...-.+.....+.|++++|.+.|.++....-.
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 34445666766666 445666777766543222 22 23334555677899999999999998865432
Q ss_pred hhHHHHHHH
Q 012365 429 VRFVIQACK 437 (465)
Q Consensus 429 ~~~~l~~~~ 437 (465)
...+++..+
T Consensus 200 ~~~l~~~AR 208 (214)
T PF09986_consen 200 EPKLKDMAR 208 (214)
T ss_pred cHHHHHHHH
Confidence 235554443
No 426
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=45.28 E-value=1.3e+02 Score=24.10 Aligned_cols=67 Identities=12% Similarity=0.232 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHH
Q 012365 200 EKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN 269 (465)
Q Consensus 200 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 269 (465)
+.+.++++..+....+. -..++..+...++.-.|.++++.+.+.+..++..|..--|..+...|-+.
T Consensus 11 ~~~~~~L~~~GlR~T~q---R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 11 AQAEKLCAQRNVRLTPQ---RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHHHHHHcCCCCCHH---HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 34445555333322222 34566666666777889999999999887778888777777777777553
No 427
>PRK09857 putative transposase; Provisional
Probab=45.27 E-value=2e+02 Score=25.61 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=41.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 012365 84 FRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD 150 (465)
Q Consensus 84 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 150 (465)
+..++....+.++.++..++++.+.+. +++.....-++..-+.+.|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 455565556667766667777666554 233333344555666666766778888888888887655
No 428
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=45.15 E-value=81 Score=20.18 Aligned_cols=15 Identities=20% Similarity=0.155 Sum_probs=7.1
Q ss_pred ccCHHHHHHHHHHHH
Q 012365 24 LLKVHVALDVVEQMV 38 (465)
Q Consensus 24 ~g~~~~A~~~~~~m~ 38 (465)
.|++-+|-++++.+-
T Consensus 12 ~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 12 AGDFFEAHEVLEELW 26 (62)
T ss_dssp TT-HHHHHHHHHHHC
T ss_pred CCCHHHhHHHHHHHH
Confidence 455555555555543
No 429
>PRK13342 recombination factor protein RarA; Reviewed
Probab=44.73 E-value=2.8e+02 Score=26.22 Aligned_cols=42 Identities=19% Similarity=0.163 Sum_probs=27.4
Q ss_pred HHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012365 118 MYNAIMAGYFR---KKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159 (465)
Q Consensus 118 ~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 159 (465)
.+..+++++.+ .++.+.|+.++..|.+.|..|....-..++.
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~ 273 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVII 273 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34445555555 4788888999999988887776544443333
No 430
>PF13934 ELYS: Nuclear pore complex assembly
Probab=44.67 E-value=2e+02 Score=24.46 Aligned_cols=70 Identities=17% Similarity=0.175 Sum_probs=33.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012365 189 LINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLN 263 (465)
Q Consensus 189 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 263 (465)
++.++...|+.+.|..+++..+........ -..++.. ..++.+.+|..+-+...+.. ....+..++..+.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~-~~~~~~~-La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGPPLSSPEA-LTLYFVA-LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCCCCCCHHH-HHHHHHH-HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 445555566777777777643333333321 2223333 45566666666555544321 1334444554444
No 431
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=44.59 E-value=74 Score=23.31 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=37.4
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHH
Q 012365 222 ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELN 269 (465)
Q Consensus 222 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 269 (465)
.++..+...+..-.|.++++.+.+.+..++..|..-.+..+.+.|-+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 456666667778889999999999887778888777777877777543
No 432
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=44.23 E-value=1.7e+02 Score=23.50 Aligned_cols=37 Identities=22% Similarity=0.155 Sum_probs=17.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 012365 94 IKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130 (465)
Q Consensus 94 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 130 (465)
.++.-.|.++++.+.+.+...+..|----|..+...|
T Consensus 38 ~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 38 QPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred cCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3444455555555555543334433333334444444
No 433
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.14 E-value=3.9e+02 Score=27.79 Aligned_cols=165 Identities=16% Similarity=0.201 Sum_probs=80.5
Q ss_pred HHhcccCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCH
Q 012365 20 YSCDLLKVHVALDVVEQMVQGELVPSTE--TINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDF 97 (465)
Q Consensus 20 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 97 (465)
.|...|+++.|++.-+. .|+.- .+..-...|...+++..|-++|.++.+ .|..+.--+....+.
T Consensus 367 ~yLd~g~y~kAL~~ar~------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~~~~~ 432 (911)
T KOG2034|consen 367 TYLDKGEFDKALEIART------RPDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLEINQE 432 (911)
T ss_pred HHHhcchHHHHHHhccC------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHhcCCH
Confidence 45568888888876542 23332 222223346777889999988888732 222333233344444
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHH-----HHHHHH-hcCCH----HHHHHHHHH------------HHHCCCCCCHHHHH
Q 012365 98 DSAYSLLDDLKEMNLMPTASMYNA-----IMAGYF-RKKDV----QGALMVLKE------------MEQANVKPDSQTFS 155 (465)
Q Consensus 98 ~~a~~~~~~m~~~~~~~~~~~~~~-----li~~~~-~~g~~----~~a~~~~~~------------m~~~~~~p~~~~~~ 155 (465)
+ +.+.|-.=+-..++|...+-.. ++..|. +.++. +++.+-++. +.......|..|..
T Consensus 433 ~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~ 511 (911)
T KOG2034|consen 433 R-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVY 511 (911)
T ss_pred H-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHH
Confidence 3 3333221111122333222222 122221 11222 222222211 11222344555555
Q ss_pred HHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012365 156 YLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208 (465)
Q Consensus 156 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 208 (465)
.++..+++...+..+-..+. -|..++.-+.+.+.+++|++++..
T Consensus 512 ~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 512 QLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666555444333332 355677788888999999888753
No 434
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=44.13 E-value=71 Score=26.52 Aligned_cols=82 Identities=15% Similarity=0.238 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHHhhCCCCC-CHHHHHHH
Q 012365 26 KVHVALDVVEQMVQG--------ELVPSTETINSILHACEESY---------EFNLVRRIYPMICHHNLKP-NSETFRSM 87 (465)
Q Consensus 26 ~~~~A~~~~~~m~~~--------~~~p~~~~~~~ll~~~~~~~---------~~~~a~~~~~~~~~~~~~~-~~~~~~~l 87 (465)
..+.|+.++..|--. |.. ...-|..+..+|.+.| +.+...++++..++.|++. =++.|+++
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~-~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssi 214 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLK-HLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSI 214 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcc-cHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceec
Confidence 467788888887432 222 5667888888888876 4566677777777777532 35677777
Q ss_pred HHHHhccCCHHHHHHHHHHHH
Q 012365 88 ISLNVKIKDFDSAYSLLDDLK 108 (465)
Q Consensus 88 i~~~~~~g~~~~a~~~~~~m~ 108 (465)
|+--.-.-+++++.++|..++
T Consensus 215 IDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 215 IDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred cccccCCCCHHHHHHHHHHhh
Confidence 765555566777777776554
No 435
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=44.00 E-value=1e+02 Score=26.62 Aligned_cols=58 Identities=7% Similarity=-0.015 Sum_probs=39.8
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHc----CC-CCChhHHHHHHHHHHhcCChhhHHHHHhcc
Q 012365 365 DFLLGACVNARDLKRAHLIWKEYENA----GL-PYNVLSYLWMYKAFLASGNRKSASKLLSKM 422 (465)
Q Consensus 365 ~~ll~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 422 (465)
-.+...|...|++++|.++|+.+... |. .+...+...+..++.+.|+.++...+.=++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34666788889999999999888532 32 334445666677777888888777665443
No 436
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=43.87 E-value=1.8e+02 Score=25.12 Aligned_cols=58 Identities=16% Similarity=0.216 Sum_probs=37.0
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHccCcHHHHHHHHHHH
Q 012365 221 SALVSALASHGRTSDAIIVYEEIKEA----G-CNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278 (465)
Q Consensus 221 ~~l~~~~~~~g~~~~a~~~~~~m~~~----~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 278 (465)
-.+..-|...|++++|.++|+.+... | ..+...+...+..+..+.|+.+....+.-++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45667777888888888888776422 2 2234445566667777777777766654443
No 437
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=43.24 E-value=2.5e+02 Score=25.38 Aligned_cols=92 Identities=20% Similarity=0.308 Sum_probs=56.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHc---CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 012365 84 FRSMISLNVKIKDFDSAYSLLDDLKEM---NLMPTASMYN--AIMAGYFRKKDVQGALMVLKEMEQ-----ANVKPDSQT 153 (465)
Q Consensus 84 ~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~ 153 (465)
...++...-+.++.++|.++++++... .-.|+...|. ...+.+...|+..++.+++.+... .+++|+..+
T Consensus 78 vei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 78 VEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHS 157 (380)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhh
Confidence 344455555667889999988887642 1246666654 445666778999999999888876 567775443
Q ss_pred -HHHHHHh-hCChhHHHHHHHHHH
Q 012365 154 -FSYLIHN-CSNEEDIIKYYEQLK 175 (465)
Q Consensus 154 -~~~ll~~-~~~~~~~~~~~~~~~ 175 (465)
|..+-.- |...++...++....
T Consensus 158 ~fY~lssqYyk~~~d~a~yYr~~L 181 (380)
T KOG2908|consen 158 SFYSLSSQYYKKIGDFASYYRHAL 181 (380)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3333222 334455555554443
No 438
>PRK13342 recombination factor protein RarA; Reviewed
Probab=42.30 E-value=3e+02 Score=25.97 Aligned_cols=70 Identities=17% Similarity=0.083 Sum_probs=36.1
Q ss_pred CchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhh-----hhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 012365 339 PDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARD-----LKRAHLIWKEYENAGLPYNVLSYLWMYKAFLAS 409 (465)
Q Consensus 339 ~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~-----~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 409 (465)
++.+.|+..+..|. +.|..|....-..+..++-..|. ...|...++.....|+|--.......+-.++.+
T Consensus 244 sd~~aal~~l~~~l-~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~pe~~~~l~~~~~~l~~~ 318 (413)
T PRK13342 244 SDPDAALYYLARML-EAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPEGRIALAQAVIYLALA 318 (413)
T ss_pred CCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHcC
Confidence 56777777777777 66766665544444444433332 333444555555566544443333333333333
No 439
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=41.23 E-value=48 Score=32.80 Aligned_cols=28 Identities=4% Similarity=-0.114 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHHhcccCHHHHHHHHHH
Q 012365 8 TPSSASYKKLITYSCDLLKVHVALDVVEQ 36 (465)
Q Consensus 8 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~ 36 (465)
..++..|+ .+..+.-.|.++.|.+++..
T Consensus 146 ~~~p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 146 EHDPDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp SGSHHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred ccchhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 34467787 67777778999999888843
No 440
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=41.22 E-value=2.7e+02 Score=28.75 Aligned_cols=15 Identities=13% Similarity=0.027 Sum_probs=8.0
Q ss_pred CCchhhhHHhHHHHH
Q 012365 338 PPDVQIGLDLLQFIK 352 (465)
Q Consensus 338 ~~~~~~A~~~~~~m~ 352 (465)
.|++..|+.++++..
T Consensus 211 ~GsmRdALsLLdQAi 225 (830)
T PRK07003 211 QGSMRDALSLTDQAI 225 (830)
T ss_pred CCCHHHHHHHHHHHH
Confidence 455555555555443
No 441
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=40.87 E-value=46 Score=24.70 Aligned_cols=44 Identities=14% Similarity=0.067 Sum_probs=19.7
Q ss_pred HHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 012365 17 LITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60 (465)
Q Consensus 17 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 60 (465)
++..+...+.+-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 44444444445555555555555554444444333344444433
No 442
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.78 E-value=2.8e+02 Score=27.88 Aligned_cols=24 Identities=4% Similarity=0.113 Sum_probs=15.1
Q ss_pred cCChhhHHHHHhccCCCCCChhHH
Q 012365 409 SGNRKSASKLLSKMPKDDPHVRFV 432 (465)
Q Consensus 409 ~g~~~~A~~~~~~m~~~~~~~~~~ 432 (465)
.|+...++++++++...+..+..+
T Consensus 263 ~~d~~~al~~l~~l~~~G~~~~~i 286 (618)
T PRK14951 263 QGDGRTVVETADELRLNGLSAAST 286 (618)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHH
Confidence 366677777777776666655433
No 443
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=40.57 E-value=1.3e+02 Score=21.12 Aligned_cols=20 Identities=10% Similarity=-0.129 Sum_probs=11.5
Q ss_pred HhHhhhhhhHHHHHHHHHHH
Q 012365 370 ACVNARDLKRAHLIWKEYEN 389 (465)
Q Consensus 370 ~~~~~g~~~~A~~~~~~m~~ 389 (465)
.....|+.++|...+++.++
T Consensus 50 ~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 34455666666666666553
No 444
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=40.02 E-value=1.4e+02 Score=21.59 Aligned_cols=61 Identities=13% Similarity=0.189 Sum_probs=32.8
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHhhCCC
Q 012365 15 KKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEES--YEFNLVRRIYPMICHHNL 77 (465)
Q Consensus 15 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~ 77 (465)
..+|.-|...|+.++|...+.++... .-.......++..+... ..-+.+..++..+.+.+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 45666777789999999988876322 11223333444444433 223334555666665553
No 445
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=39.90 E-value=2.9e+02 Score=25.12 Aligned_cols=64 Identities=14% Similarity=-0.080 Sum_probs=51.3
Q ss_pred hhhhHHhHHHHHhhcCCCCcH----HHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 012365 341 VQIGLDLLQFIKDELGLPPSR----KCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFL 407 (465)
Q Consensus 341 ~~~A~~~~~~m~~~~~~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 407 (465)
.++.+.++..+. ..-|+. ..|-++++.....|.++....+|++++..|..|-...-..+++.+-
T Consensus 119 ~eei~~~L~~li---~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLI---KNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHH---hcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 456777777766 344554 4678888889999999999999999999999998888887777765
No 446
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=39.78 E-value=98 Score=20.53 Aligned_cols=50 Identities=18% Similarity=0.130 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 012365 198 EFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIAL 258 (465)
Q Consensus 198 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 258 (465)
+.+.|..++.++....+..+..||++...+.+++- .-..+.||.....-+
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RHkF-----------~iskl~pd~~~LG~L 61 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRHKF-----------QISKLQPDENILGEL 61 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHccc-----------hhhhcCccHHHHHHH
Confidence 56778888887776666666678888777766531 122356777766443
No 447
>PHA03100 ankyrin repeat protein; Provisional
Probab=39.30 E-value=3.6e+02 Score=25.94 Aligned_cols=42 Identities=12% Similarity=0.071 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHH
Q 012365 167 IIKYYEQLKSAGGQITKYV--FMALINAYTTCGEFEKARQVVLD 208 (465)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~ 208 (465)
-.++.+.+.+.|..++... -.+.+...+..|+.+-+.-+++.
T Consensus 155 ~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ 198 (480)
T PHA03100 155 DLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDN 198 (480)
T ss_pred hHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 3456666777776554322 12345566677777766666653
No 448
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=39.27 E-value=58 Score=17.98 Aligned_cols=31 Identities=13% Similarity=0.118 Sum_probs=13.7
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHH
Q 012365 384 WKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKL 418 (465)
Q Consensus 384 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 418 (465)
++++.+.|++++ ..-.+|.. ..|+.+.|..+
T Consensus 6 v~~L~~mGf~~~-~~~~AL~~---~~~nve~A~~~ 36 (37)
T PF00627_consen 6 VQQLMEMGFSRE-QAREALRA---CNGNVERAVDW 36 (37)
T ss_dssp HHHHHHHTS-HH-HHHHHHHH---TTTSHHHHHHH
T ss_pred HHHHHHcCCCHH-HHHHHHHH---cCCCHHHHHHh
Confidence 344455565544 23322222 34466666654
No 449
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=39.05 E-value=2.1e+02 Score=23.29 Aligned_cols=67 Identities=12% Similarity=0.150 Sum_probs=39.1
Q ss_pred hhhhHHhHHHHHhhcCCCCcH--HHH-----HHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 012365 341 VQIGLDLLQFIKDELGLPPSR--KCL-----DFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGN 411 (465)
Q Consensus 341 ~~~A~~~~~~m~~~~~~~p~~--~~~-----~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 411 (465)
++-|+.+|+.+. +..-.|.. ... ...+..|.+.|.+++|.+++++..+ .|+......-+....+..+
T Consensus 85 LESAl~v~~~I~-~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIE-KEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
Confidence 456777777777 33333311 111 2244568888999999998888886 3444444444444444443
No 450
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=39.01 E-value=67 Score=23.78 Aligned_cols=49 Identities=16% Similarity=0.310 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcH
Q 012365 220 KSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGEL 268 (465)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 268 (465)
-..++..+...+.+-.|.++++.+.+.+...+..|.---+..+.+.|-+
T Consensus 10 R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 10 RLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 3567777788788899999999999999888888877777777776644
No 451
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=38.79 E-value=4.6e+02 Score=27.08 Aligned_cols=153 Identities=19% Similarity=0.156 Sum_probs=75.2
Q ss_pred CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCC-CccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHH
Q 012365 247 GCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY-WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYH 325 (465)
Q Consensus 247 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 325 (465)
++..+......++... .|+..+++.+++.+..... ..... ..=..+.+.+.+..............+..
T Consensus 192 ~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~--------i~It~~~~~e~l~~~~~~ydk~gd~hyd~ 261 (725)
T PRK13341 192 KVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGL--------IDITLAIAEESIQQRAVLYDKEGDAHFDT 261 (725)
T ss_pred ccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCc--------eeccHHHHHHHHHHhhhhcccCCCCCHHH
Confidence 4555666666665543 7888888888877542110 00000 00011112222222111011111223333
Q ss_pred HHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhh-----hhHHHHHHHHHHHcCCCCChhHHH
Q 012365 326 FSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARD-----LKRAHLIWKEYENAGLPYNVLSYL 400 (465)
Q Consensus 326 l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~-----~~~A~~~~~~m~~~g~~p~~~~~~ 400 (465)
+.+++..+. .++++.|+..+.+|. ..|..|....-..++.+.-..|. ...|...++.....|+|--.....
T Consensus 262 Isa~~ksir---gsD~daAl~~la~ml-~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~pE~~~~la 337 (725)
T PRK13341 262 ISAFIKSLR---GSDPDAALYWLARMV-EAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGLPEGLYPLA 337 (725)
T ss_pred HHHHHHHHh---cCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCCcchhhHHH
Confidence 333333322 278899999999999 88888866555555544434443 233445555556667655555555
Q ss_pred HHHHHHHhcCChh
Q 012365 401 WMYKAFLASGNRK 413 (465)
Q Consensus 401 ~l~~~~~~~g~~~ 413 (465)
...-.++.+-+-.
T Consensus 338 q~~~~la~apKSn 350 (725)
T PRK13341 338 QAALYLATAPKSN 350 (725)
T ss_pred HHHHHHHcCCCcc
Confidence 4444444444333
No 452
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=38.48 E-value=1.1e+02 Score=19.64 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=28.7
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH-----hccCCHHHHHHHH
Q 012365 56 CEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLN-----VKIKDFDSAYSLL 104 (465)
Q Consensus 56 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-----~~~g~~~~a~~~~ 104 (465)
+...|++-++-++++.+-...-.+....+..+|.+. .+.|+...|.+++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 446778888888888877543334455566666543 3446666665543
No 453
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=38.34 E-value=4.5e+02 Score=26.87 Aligned_cols=116 Identities=10% Similarity=0.147 Sum_probs=66.4
Q ss_pred HHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCC--hHHH------HHHHHHHHHcCCChhH
Q 012365 167 IIKYYEQLKSAGGQIT---KYVFMALINAYTTCGEFEKARQVVLDAEIPVKS--RSEV------KSALVSALASHGRTSD 235 (465)
Q Consensus 167 ~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~------~~~l~~~~~~~g~~~~ 235 (465)
...++..|..+--.|+ ..+...++-.|....+++...++.+.++.-+.. .+.+ |...++--.+-|+-++
T Consensus 182 l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRak 261 (1226)
T KOG4279|consen 182 LNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAK 261 (1226)
T ss_pred HHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHH
Confidence 4456677776543443 456666777778888888888888875443311 1111 3333333344577778
Q ss_pred HHHHHHHHHHcC--CCCCHHHH-----HH--HHHHHHccCcHHHHHHHHHHHcCCC
Q 012365 236 AIIVYEEIKEAG--CNLEPRAV-----IA--LIEHLNSEGELNRLIQLLEEVHDPD 282 (465)
Q Consensus 236 a~~~~~~m~~~~--~~p~~~~~-----~~--ll~~~~~~g~~~~a~~~~~~~~~~~ 282 (465)
|+.+.-.|.+.. +.||..+. .- +-+.|...+..+.|.+.|++.-+..
T Consensus 262 AL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeve 317 (1226)
T KOG4279|consen 262 ALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVE 317 (1226)
T ss_pred HHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccC
Confidence 888777776652 55665432 11 1123445556667777777665543
No 454
>PRK09857 putative transposase; Provisional
Probab=38.31 E-value=2.9e+02 Score=24.60 Aligned_cols=63 Identities=5% Similarity=0.079 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChh---HHHHHHHHHHHcCCCCC
Q 012365 119 YNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE---DIIKYYEQLKSAGGQIT 182 (465)
Q Consensus 119 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~~~~~~~~~~~~~~ 182 (465)
+..++.-....++.++..++++.+.+. +++.....-++..-+.+.| ...++...|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344554445566666666666666543 2222222222223332222 34456777777787654
No 455
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=38.11 E-value=1.1e+02 Score=22.18 Aligned_cols=61 Identities=10% Similarity=0.244 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCC--hhHHHHHHHHHHHcCC
Q 012365 187 MALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGR--TSDAIIVYEEIKEAGC 248 (465)
Q Consensus 187 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~ 248 (465)
..++..|...|+.++|..-++++..+ ......-..++......++ -+.+..++..+...+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~-~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP-SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G-GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC-ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 45566777888999998888876555 3332233444444444422 2234566666666664
No 456
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.09 E-value=4.1e+02 Score=26.32 Aligned_cols=91 Identities=14% Similarity=0.091 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHH--H-HhccCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcC-
Q 012365 62 FNLVRRIYPMICHHNLKPNSETFRSMIS--L-NVKIKDFDSAYSLLDDLKE-------MNLMPTASMYNAIMAGYFRKK- 130 (465)
Q Consensus 62 ~~~a~~~~~~~~~~~~~~~~~~~~~li~--~-~~~~g~~~~a~~~~~~m~~-------~~~~~~~~~~~~li~~~~~~g- 130 (465)
...+.++++...+.|. ........++. + +....+++.|..+|+.... .| ......-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 4678888888877762 22222222222 2 4466788888888888765 44 2334555666665532
Q ss_pred ----CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 012365 131 ----DVQGALMVLKEMEQANVKPDSQTFSYL 157 (465)
Q Consensus 131 ----~~~~a~~~~~~m~~~~~~p~~~~~~~l 157 (465)
+.+.|+.++...-+.|. |+...+...
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~ 333 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGN-PDAQYLLGV 333 (552)
T ss_pred CccccHHHHHHHHHHHHhcCC-chHHHHHHH
Confidence 55667888777776653 444443333
No 457
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=37.96 E-value=2.6e+02 Score=23.99 Aligned_cols=85 Identities=12% Similarity=-0.080 Sum_probs=47.1
Q ss_pred HHcCCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHccCcHHHHHHHHHHHcCCCCC-ccchhhHhhHhhhcCChhHH
Q 012365 227 LASHGRTSDAIIVYEEIKEAGCNLEPRAV-IALIEHLNSEGELNRLIQLLEEVHDPDYW-MDGCCRLILHCVRFKQLSSA 304 (465)
Q Consensus 227 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a 304 (465)
|....+++.|+..+.+....+ |+..+| +.=+.++.+..+++.+..--....+...+ .-...-+.........+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 444566777887666666544 666544 44455556666666665544444332211 11223344445566677777
Q ss_pred HHHHHHHHH
Q 012365 305 TDLLKQLKD 313 (465)
Q Consensus 305 ~~~~~~~~~ 313 (465)
+..+.+...
T Consensus 98 I~~Lqra~s 106 (284)
T KOG4642|consen 98 IKVLQRAYS 106 (284)
T ss_pred HHHHHHHHH
Confidence 777766644
No 458
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=37.91 E-value=1.3e+02 Score=29.32 Aligned_cols=86 Identities=13% Similarity=0.077 Sum_probs=42.8
Q ss_pred cCCHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHH
Q 012365 196 CGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQL 274 (465)
Q Consensus 196 ~g~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 274 (465)
.|+...|.+.+... ...+.........|.......|..-+|..++.+...-. ...+.++.++-.++.-..+++.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 45555555555441 11111111113334444555555556666665555443 23445555556666666666666666
Q ss_pred HHHHcCCC
Q 012365 275 LEEVHDPD 282 (465)
Q Consensus 275 ~~~~~~~~ 282 (465)
|++..+..
T Consensus 699 ~~~a~~~~ 706 (886)
T KOG4507|consen 699 FRQALKLT 706 (886)
T ss_pred HHHHHhcC
Confidence 66655443
No 459
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=37.43 E-value=46 Score=28.01 Aligned_cols=54 Identities=13% Similarity=0.147 Sum_probs=28.9
Q ss_pred hhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCC
Q 012365 373 NARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDP 427 (465)
Q Consensus 373 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 427 (465)
+.|+.+.|.+++.+.... .|.....|-.+...-.+.|+++.|.+-+++.++.+|
T Consensus 7 ~~~D~~aaaely~qal~l-ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 7 ESGDAEAAAELYNQALEL-APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred ccCChHHHHHHHHHHhhc-CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 445555555555555554 344444555555555555555555555555555444
No 460
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=37.21 E-value=2.6e+02 Score=23.69 Aligned_cols=100 Identities=11% Similarity=0.149 Sum_probs=52.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC---CHHHHH--HHHHHHhccCCHHHHHHHHHHHHHcCCCCCH
Q 012365 42 LVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKP---NSETFR--SMISLNVKIKDFDSAYSLLDDLKEMNLMPTA 116 (465)
Q Consensus 42 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 116 (465)
+.+...-+|.|+--|.-...+.+|-+.|.. ..|+.| +..+++ .-|......|+++.|.+....+...=+.-|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 344555566655555555455555555543 344433 333332 3455567778888877777666432222333
Q ss_pred HHHHHHH----HHHHhcCCHHHHHHHHHHHH
Q 012365 117 SMYNAIM----AGYFRKKDVQGALMVLKEME 143 (465)
Q Consensus 117 ~~~~~li----~~~~~~g~~~~a~~~~~~m~ 143 (465)
..+-.|. --..+.|..++|+++.+.=.
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 2222221 12456677777777776543
No 461
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=37.14 E-value=7.8e+02 Score=29.27 Aligned_cols=116 Identities=9% Similarity=0.037 Sum_probs=69.8
Q ss_pred HHHHHhcccCHHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHh
Q 012365 17 LITYSCDLLKVHVALDVVEQM----VQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92 (465)
Q Consensus 17 li~~~~~~g~~~~A~~~~~~m----~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 92 (465)
+-.+-.+.+.+.+|+..++.- .+... ....|-.+...|+..+++|.+..+...-.. +...++. |....
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~--~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~q-il~~e 1460 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKET--EEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQQ-ILEHE 1460 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHH--HHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHHH-HHHHH
Confidence 444555677888888888773 22111 123344444478888888888777764111 2223333 33356
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012365 93 KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKE 141 (465)
Q Consensus 93 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 141 (465)
..|++..|...|+.+.+.+ ++...+++-++......|.++.+.-..+-
T Consensus 1461 ~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg 1508 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDG 1508 (2382)
T ss_pred hhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcc
Confidence 6788888888888888765 34466677666666666666665554433
No 462
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.75 E-value=4.2e+02 Score=26.07 Aligned_cols=106 Identities=18% Similarity=0.139 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhH-hhhhhhHHHHHHHHHHHc---CCCC
Q 012365 319 EMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACV-NARDLKRAHLIWKEYENA---GLPY 394 (465)
Q Consensus 319 ~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~-~~g~~~~A~~~~~~m~~~---g~~p 394 (465)
+..++..+...+..+++ .|-+..|++.-+-+. ...-.-|+...-.+|+-|+ +..++.-..++++..... ..-|
T Consensus 338 NR~FyL~l~r~m~~l~~--RGC~rTA~E~cKlll-sLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~P 414 (665)
T KOG2422|consen 338 NRQFYLALFRYMQSLAQ--RGCWRTALEWCKLLL-SLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLP 414 (665)
T ss_pred hHHHHHHHHHHHHHHHh--cCChHHHHHHHHHHh-hcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcC
Confidence 33344444444444443 488899998888877 3333335666667777665 567888888888877543 3456
Q ss_pred ChhHHHHHHHHHHhcCC---hhhHHHHHhccCCCCC
Q 012365 395 NVLSYLWMYKAFLASGN---RKSASKLLSKMPKDDP 427 (465)
Q Consensus 395 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~ 427 (465)
|-.--.+|...|.+... -+.|...+.+.++.-|
T Consensus 415 N~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 415 NFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred CchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 66555566666666554 4566666666665444
No 463
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=36.28 E-value=1.5e+02 Score=20.65 Aligned_cols=65 Identities=15% Similarity=0.004 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHH
Q 012365 168 IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAI 237 (465)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 237 (465)
.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. ..+. +|..+++++...|+-+-|.
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~---aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEG---WFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCc---HHHHHHHHHHHcCchhhhh
Confidence 4455666666532 33333333322335577777777777655 2222 3667777777776655443
No 464
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=35.76 E-value=4.3e+02 Score=25.84 Aligned_cols=61 Identities=8% Similarity=-0.039 Sum_probs=34.3
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 012365 15 KKLITYSCDLLKVHVALDVVEQMVQGELVP-STETINSILHACEESYEFNLVRRIYPMICHH 75 (465)
Q Consensus 15 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 75 (465)
..++.-|.+.+++++|..++..|.=.-... --...+.+++.+.+..--++.+..++.+...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 457778999999999999998884321110 1122333344444444344445555555443
No 465
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=35.75 E-value=2.5e+02 Score=28.10 Aligned_cols=75 Identities=15% Similarity=0.115 Sum_probs=37.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcC---CCCChHHHHHHHHHHHHcCCChhH--HHHHHHH-HHHcCCCCCHHHHHHHHHH
Q 012365 188 ALINAYTTCGEFEKARQVVLDAEI---PVKSRSEVKSALVSALASHGRTSD--AIIVYEE-IKEAGCNLEPRAVIALIEH 261 (465)
Q Consensus 188 ~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~--a~~~~~~-m~~~~~~p~~~~~~~ll~~ 261 (465)
+|+.+|..+|++..+.++++..-. ..+.....+|..|+.+.+.|.++- ...-..+ +....+.-|..||..++++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 566777777777777777665211 112222236666777777665542 1111111 1222244466666655544
Q ss_pred H
Q 012365 262 L 262 (465)
Q Consensus 262 ~ 262 (465)
-
T Consensus 113 s 113 (1117)
T COG5108 113 S 113 (1117)
T ss_pred h
Confidence 3
No 466
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=35.34 E-value=3.7e+02 Score=24.97 Aligned_cols=79 Identities=16% Similarity=0.142 Sum_probs=54.3
Q ss_pred CCchhhhHHhHHHHHhhcCCCCcHHHHHH------------HHHHhHhhhhhhHHHHHHHHHHHcCC-CCChh-----HH
Q 012365 338 PPDVQIGLDLLQFIKDELGLPPSRKCLDF------------LLGACVNARDLKRAHLIWKEYENAGL-PYNVL-----SY 399 (465)
Q Consensus 338 ~~~~~~A~~~~~~m~~~~~~~p~~~~~~~------------ll~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~-----~~ 399 (465)
.|++++|..++.+.. +.||.+ =++.|...+|+-.|--+-+++...=+ .||.. -|
T Consensus 144 ~Gdi~~Aa~il~el~--------VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY 215 (439)
T KOG1498|consen 144 QGDIAEAADILCELQ--------VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYY 215 (439)
T ss_pred cCCHHHHHHHHHhcc--------hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHH
Confidence 699999998888765 233333 24567778888888877777765422 44443 57
Q ss_pred HHHHHHHHhcCChhhHHHHHhccCC
Q 012365 400 LWMYKAFLASGNRKSASKLLSKMPK 424 (465)
Q Consensus 400 ~~l~~~~~~~g~~~~A~~~~~~m~~ 424 (465)
+.++......+.+-++-+.++..-.
T Consensus 216 ~lmI~l~lh~~~Yl~v~~~Yraiy~ 240 (439)
T KOG1498|consen 216 ELMIRLGLHDRAYLNVCRSYRAIYD 240 (439)
T ss_pred HHHHHhcccccchhhHHHHHHHHhc
Confidence 7777777777778777777777654
No 467
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=35.03 E-value=5.1e+02 Score=26.49 Aligned_cols=135 Identities=10% Similarity=0.220 Sum_probs=65.4
Q ss_pred ccCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHhcCCHHHHHH---------HHHH-
Q 012365 4 KLEITPSSASYKKLITYSCDLLKVHVALDVVEQMV-QGELVPS-TETINSILHACEESYEFNLVRR---------IYPM- 71 (465)
Q Consensus 4 ~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~-~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~---------~~~~- 71 (465)
.+.+.++...+.+++.-|... -.+.+.+.++.-. ..++.|- ....+.++..|...+++..+.. +++.
T Consensus 88 ~F~Vd~~S~y~etivak~id~-yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~A 166 (929)
T KOG2062|consen 88 DFDVDENSDYVETIVAKCIDM-YIETASETYKNPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEA 166 (929)
T ss_pred cccccCccchhhHHHHHHHHH-HHHHHHHHhcCccccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHH
Confidence 466777788888777766533 1223333333211 1111111 1233444444444444444332 2222
Q ss_pred HhhCCCCCCHHHHHHHHHHHhccC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 012365 72 ICHHNLKPNSETFRSMISLNVKIK-----DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145 (465)
Q Consensus 72 ~~~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 145 (465)
+.+.. .+....+.++..+.... +.+.-..++....... .|| |..+..+|.-..+.+.+.++++++.+.
T Consensus 167 il~~d--~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~-~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 167 ILKSD--SVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLP-SPD---YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred hcccc--ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCC-CCC---eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 22222 12223334444433332 2222222333333221 344 667788888999999999999999874
No 468
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=34.91 E-value=4e+02 Score=25.17 Aligned_cols=30 Identities=7% Similarity=-0.052 Sum_probs=15.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012365 178 GGQITKYVFMALINAYTTCGEFEKARQVVL 207 (465)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 207 (465)
.+.||..+.|-+...+...-..+-...+++
T Consensus 178 kitPd~Y~lnWf~sLFas~~Stev~~a~Wd 207 (669)
T KOG3636|consen 178 KITPDMYTLNWFASLFASSMSTEVCHALWD 207 (669)
T ss_pred ccCchHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 455565555555554444444444444444
No 469
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=34.60 E-value=2.7e+02 Score=23.10 Aligned_cols=48 Identities=8% Similarity=0.216 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHhccCC
Q 012365 48 TINSILHACEESYEFNLVRRIYPMICHHNLKPNSE-TFRSMISLNVKIKD 96 (465)
Q Consensus 48 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~ 96 (465)
..+.+++.|.-.|+++.|.++|.-+.+.. +.|.. .|..=+..+.+.+.
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~ 91 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGE 91 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCC
Confidence 45566777777778888877777777654 33432 33433444444433
No 470
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.46 E-value=4.4e+02 Score=25.54 Aligned_cols=101 Identities=9% Similarity=0.013 Sum_probs=60.5
Q ss_pred HHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 012365 28 HVALDVVEQM-VQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDD 106 (465)
Q Consensus 28 ~~A~~~~~~m-~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 106 (465)
+...+.++.. ...|+..+......+... ..|++..|+.+++++...+ ....++..+.. ++
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~-------------~l-- 243 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAIVFT--DSKLTGVKIRK-------------MI-- 243 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHHHhC--CCCcCHHHHHH-------------Hh--
Confidence 3344444444 346777788777666544 5699999999999875432 11122222211 11
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 012365 107 LKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ 152 (465)
Q Consensus 107 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 152 (465)
|+ .+...+..++.+....+....|+.++.+|.+.|..|...
T Consensus 244 ----g~-~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 244 ----GY-HGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred ----CC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 32 355556666666655555677888888888888766544
No 471
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=34.42 E-value=87 Score=27.71 Aligned_cols=44 Identities=11% Similarity=0.184 Sum_probs=21.5
Q ss_pred HHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHH
Q 012365 345 LDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYEN 389 (465)
Q Consensus 345 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 389 (465)
.++++.+. +.++.|.-..|.-+.-.+.+.=.+.....+|+.+..
T Consensus 263 ~EL~~~L~-~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLE-EKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHH-hcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 34455555 555555554444333334444445555555555543
No 472
>PRK09462 fur ferric uptake regulator; Provisional
Probab=34.09 E-value=2.2e+02 Score=22.05 Aligned_cols=59 Identities=15% Similarity=0.143 Sum_probs=41.4
Q ss_pred hcCCCCcHHHHHHHHHHhHhh-hhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChh
Q 012365 354 ELGLPPSRKCLDFLLGACVNA-RDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRK 413 (465)
Q Consensus 354 ~~~~~p~~~~~~~ll~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 413 (465)
..|++++..-. .++..+... +..-.|.++++.+.+.+...+..|...-++.+...|-..
T Consensus 10 ~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 10 KAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 56777766533 334444443 567889999999998876677777777778888888653
No 473
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=34.02 E-value=3.4e+02 Score=24.22 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=16.0
Q ss_pred HHHHHHHHHHcCCChhHHHH
Q 012365 219 VKSALVSALASHGRTSDAII 238 (465)
Q Consensus 219 ~~~~l~~~~~~~g~~~~a~~ 238 (465)
+|..|+.+++..|+.+-.+-
T Consensus 323 ~yaPLL~af~s~g~sEL~Ll 342 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELELL 342 (412)
T ss_pred hhhHHHHHHhcCChHHHHHH
Confidence 48889999999998776553
No 474
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=33.93 E-value=1.2e+02 Score=18.73 Aligned_cols=35 Identities=17% Similarity=0.091 Sum_probs=22.8
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012365 223 LVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALI 259 (465)
Q Consensus 223 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 259 (465)
+.-++.+.|++++|.+..+.+.+.. |+-.....|-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~e--P~N~Qa~~L~ 41 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIE--PDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHT--TS-HHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhC--CCcHHHHHHH
Confidence 5556778888888888888887755 6655554443
No 475
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=33.31 E-value=1.5e+02 Score=19.76 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=19.8
Q ss_pred CchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhh
Q 012365 339 PDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNAR 375 (465)
Q Consensus 339 ~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g 375 (465)
++.+.+.+++++.. ..|..|.......+..+..+.|
T Consensus 15 ~d~~~~~~~~~~~l-~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 15 GDEEEAEALLEEAL-AQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp T-CCHHHHHHHHHH-HCSSSTTHHHHHTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHH
Confidence 66666666666666 4456665555555554444443
No 476
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=33.04 E-value=52 Score=30.85 Aligned_cols=284 Identities=11% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 012365 53 LHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132 (465)
Q Consensus 53 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 132 (465)
+.+.+..|.++-+.-+++.- ..+..+..|-+.=+.+.|-.|+++-+.-+++.--+-.+ +|..-.+.|+-++.+..
T Consensus 88 LWaAsaAGHl~vVk~L~~~g--a~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~I-anrhGhTcLmIa~ykGh-- 162 (615)
T KOG0508|consen 88 LWAASAAGHLEVVKLLLRRG--ASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEI-ANRHGHTCLMIACYKGH-- 162 (615)
T ss_pred hhHHhccCcHHHHHHHHHhc--CccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcc-cccCCCeeEEeeeccCc--
Q ss_pred HHHHHHHHHHHHCCCCCCHHHH--HHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHh
Q 012365 133 QGALMVLKEMEQANVKPDSQTF--SYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMAL-INAYTTCGEFEKARQVVLDA 209 (465)
Q Consensus 133 ~~a~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~ 209 (465)
.++.+.+.+.|..++..++ |+.++-|+..|.++ +.+.+.+.|.+.+..-+..- +-.....|..+-.+.+++..
T Consensus 163 ---~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vd-ivq~Ll~~ga~i~~d~~GmtPL~~Aa~tG~~~iVe~L~~~~ 238 (615)
T KOG0508|consen 163 ---VDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVD-IVQLLLKHGAKIDVDGHGMTPLLLAAVTGHTDIVERLLQCE 238 (615)
T ss_pred ---hHHHHHHHHhCCCcchhcccCchHHHhhhhcccHH-HHHHHHhCCceeeecCCCCchHHHHhhhcchHHHHHHhcCC
Q ss_pred cCCCCChHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCC
Q 012365 210 EIPVKSRSEVKSALVSALASHGR-TSDAIIVYEEIKEAGCN-----LEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY 283 (465)
Q Consensus 210 ~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~m~~~~~~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 283 (465)
......... ...+...|....+ .-.|+..|.+..+.... +...++ ..+.+|..........++=.-..+
T Consensus 239 ~sr~~riea-lEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~-~p~~ay~~~re~~~~~elE~lv~D--- 313 (615)
T KOG0508|consen 239 TSRESRIEA-LELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPL-EPVLAYGYGREVNNREELEELVED--- 313 (615)
T ss_pred cchhhHHHH-HHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCC-CchhhhhhhhhcCCHHHHHHHhcC---
Q ss_pred CccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHH---HHhhcCCCC-
Q 012365 284 WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQF---IKDELGLPP- 359 (465)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~---m~~~~~~~p- 359 (465)
....--.|+-+-+++.....|+..-+-..-...++. .|+++..+++|.. |+ +..+.|
T Consensus 314 -------------~d~~RmqaLiirerILgpsh~d~sYyir~rgavyad-----~g~~~rCi~LWkyAL~mq-Qk~l~Pl 374 (615)
T KOG0508|consen 314 -------------PDEMRMQALIIRERILGPSHPDVSYYIRYRGAVYAD-----SGEFERCIRLWKYALDMQ-QKNLEPL 374 (615)
T ss_pred -------------hHHHHHHHHHHHHHHhCCCCCCceeEEEeeeeeecC-----CccHHHHHHHHHHHHHHH-HhhcCCC
Q ss_pred cHHHHHHHHH
Q 012365 360 SRKCLDFLLG 369 (465)
Q Consensus 360 ~~~~~~~ll~ 369 (465)
++.|-+++++
T Consensus 375 spmT~sslls 384 (615)
T KOG0508|consen 375 SPMTASSLLS 384 (615)
T ss_pred CcccHHHHHH
No 477
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=32.86 E-value=4.7e+02 Score=25.62 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=10.2
Q ss_pred CChhhHHHHHhccCCCCCCh
Q 012365 410 GNRKSASKLLSKMPKDDPHV 429 (465)
Q Consensus 410 g~~~~A~~~~~~m~~~~~~~ 429 (465)
|+..+|..+++++...|..+
T Consensus 271 ~d~~~Al~~l~~L~~~g~~~ 290 (507)
T PRK06645 271 RETEKAINLINKLYGSSVNL 290 (507)
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 45555555555555444443
No 478
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=32.84 E-value=1.9e+02 Score=21.21 Aligned_cols=31 Identities=16% Similarity=0.136 Sum_probs=20.7
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHH
Q 012365 87 MISLNVKIKDFDSAYSLLDDLKEMNLMPTASM 118 (465)
Q Consensus 87 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 118 (465)
+|+.+-++...++|+++.+.|...| ..+...
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~ 97 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEE 97 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHH
Confidence 4555667777788888888887777 344433
No 479
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=32.76 E-value=1.1e+02 Score=28.70 Aligned_cols=58 Identities=12% Similarity=0.161 Sum_probs=32.8
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHcCC---------CCCccchhhHhhHhhhcCChhHHHHHHHHHHH
Q 012365 256 IALIEHLNSEGELNRLIQLLEEVHDP---------DYWMDGCCRLILHCVRFKQLSSATDLLKQLKD 313 (465)
Q Consensus 256 ~~ll~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 313 (465)
..|++..+-.|++..|+++++.+.-. +..+..+..+..+|.-.+++.+|++.|..+..
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555544211 12234556667777777777777777766543
No 480
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=32.68 E-value=2e+02 Score=21.15 Aligned_cols=39 Identities=5% Similarity=0.019 Sum_probs=28.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 012365 52 ILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLN 91 (465)
Q Consensus 52 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 91 (465)
++.-+.+....++|+++++.|.++| ..+...-+.|-..+
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L 105 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSIL 105 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 5566677788999999999999998 56666555554433
No 481
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=32.64 E-value=2.8e+02 Score=22.81 Aligned_cols=16 Identities=19% Similarity=0.150 Sum_probs=9.2
Q ss_pred hhhhhHHHHHHHHHHH
Q 012365 374 ARDLKRAHLIWKEYEN 389 (465)
Q Consensus 374 ~g~~~~A~~~~~~m~~ 389 (465)
.|+++.|.+.++-|.+
T Consensus 134 ~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 134 KGSFEEAERFLKFMEK 149 (204)
T ss_pred hccHHHHHHHHHHHHH
Confidence 4556666666655553
No 482
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=32.31 E-value=9.4e+02 Score=28.72 Aligned_cols=113 Identities=10% Similarity=0.054 Sum_probs=59.9
Q ss_pred HHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHH
Q 012365 20 YSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDS 99 (465)
Q Consensus 20 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 99 (465)
.|..-++++...-+...-.. +...+. -|-.....|++..|...|+.+.+.+ ++....++-++......|.++.
T Consensus 1429 lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t 1501 (2382)
T KOG0890|consen 1429 LYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLST 1501 (2382)
T ss_pred HHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhH
Confidence 56666666666555553111 111222 2334456678888888888887765 4446666666666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHH
Q 012365 100 AYSLLDDLKEMNLMPTASMYNAI-MAGYFRKKDVQGALMVLK 140 (465)
Q Consensus 100 a~~~~~~m~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~ 140 (465)
+....+.....- .+....|+.+ +.+--+.++++...+...
T Consensus 1502 ~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1502 EILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 666555444321 2223333322 333345566655554433
No 483
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=31.83 E-value=3.9e+02 Score=24.17 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=0.0
Q ss_pred cCHHHHHHHHHHHHhCCCCC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCCCCHHHHHHHHHH
Q 012365 25 LKVHVALDVVEQMVQGELVP-------------STETINSILHACEESYEFNLVRRIYPMICH-HNLKPNSETFRSMISL 90 (465)
Q Consensus 25 g~~~~A~~~~~~m~~~~~~p-------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~ 90 (465)
++.+....+++.+++.++.| |...++.+..+ +..+.++-.+..+...+ .|-.--...+-.....
T Consensus 36 ~~~~~~e~l~~~Ird~~Map~Ye~lce~~~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeY 113 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAPLYEYLCESLVIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEY 113 (393)
T ss_pred cCHHHHHHHHHHHHhcccchHHHHHHhhcceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q ss_pred HhccCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCC
Q 012365 91 NVKIKDFDSAYSLLDDLKEM----NLMPTASMYNAIMA-GYFRKKDVQGALMVLKEMEQAN 146 (465)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~ 146 (465)
||+-||-+.|++.+.+..+. |...|+..+.+-+. .|....-..+-++..+.+.+.|
T Consensus 114 ycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~G 174 (393)
T KOG0687|consen 114 YCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEG 174 (393)
T ss_pred HHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
No 484
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=31.54 E-value=1.2e+02 Score=26.08 Aligned_cols=80 Identities=16% Similarity=0.117 Sum_probs=48.5
Q ss_pred hhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCC----------CC---------------C
Q 012365 341 VQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGL----------PY---------------N 395 (465)
Q Consensus 341 ~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~----------~p---------------~ 395 (465)
+++|+..++.-. .-..++.+...+..++...|+-..+..+++.+.+... .. +
T Consensus 115 i~kA~~~L~~~~---~~~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~ 191 (246)
T PF07678_consen 115 INKALNYLERHL---DNIQDPYTLALVAYALALAGDSPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLD 191 (246)
T ss_dssp HHHHHHHHHHHH---GCTSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHH
T ss_pred HHHHHHHHHHhc---cccCCHHHHHHHHHHHHhhcccchHHHHHHHHHHhhhhccccCcccCCcccccccccccccchHH
Confidence 455566665443 4456777777777777788888888888888764300 00 1
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHhccC
Q 012365 396 VLSYLWMYKAFLASGNRKSASKLLSKMP 423 (465)
Q Consensus 396 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 423 (465)
+.+=.-.+-++.+.++.+.|..+.+=+.
T Consensus 192 vEtTaYaLLa~l~~~~~~~~~~iv~WL~ 219 (246)
T PF07678_consen 192 VETTAYALLALLKRGDLEEASPIVRWLI 219 (246)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 1222222334556699888888776554
No 485
>PRK09462 fur ferric uptake regulator; Provisional
Probab=31.42 E-value=2.5e+02 Score=21.79 Aligned_cols=35 Identities=14% Similarity=0.044 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 012365 96 DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130 (465)
Q Consensus 96 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 130 (465)
..-.|.++++.+.+.+...+..|----|..+...|
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34455555555555543334443333334444433
No 486
>COG0819 TenA Putative transcription activator [Transcription]
Probab=31.37 E-value=3.2e+02 Score=23.05 Aligned_cols=22 Identities=9% Similarity=0.218 Sum_probs=11.0
Q ss_pred CCCHHHHHHHHHHHhccCCHHH
Q 012365 78 KPNSETFRSMISLNVKIKDFDS 99 (465)
Q Consensus 78 ~~~~~~~~~li~~~~~~g~~~~ 99 (465)
.|....|...|...+..|++.+
T Consensus 106 ~~~~~aYt~ym~~~~~~g~~~~ 127 (218)
T COG0819 106 SPANKAYTRYLLDTAYSGSFAE 127 (218)
T ss_pred CchHHHHHHHHHHHHhcCCHHH
Confidence 3444555555555555555433
No 487
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=30.15 E-value=3.9e+02 Score=23.67 Aligned_cols=100 Identities=13% Similarity=0.133 Sum_probs=46.8
Q ss_pred chhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcH----H
Q 012365 287 GCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSR----K 362 (465)
Q Consensus 287 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~----~ 362 (465)
+.-.+..+|++-++.+.+.+..++..+.......-...++...-..+...+..-+++.++..+.|. +.|...+. .
T Consensus 117 a~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~i-EkGgDWeRrNRyK 195 (412)
T COG5187 117 ADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDII-EKGGDWERRNRYK 195 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhCCCHHhhhhHH
Confidence 344566667777777777766665544211111111111111111111222334555666666666 44443322 2
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHH
Q 012365 363 CLDFLLGACVNARDLKRAHLIWKEYEN 389 (465)
Q Consensus 363 ~~~~ll~~~~~~g~~~~A~~~~~~m~~ 389 (465)
+|..+- +....++.+|-.++-+...
T Consensus 196 ~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 196 VYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 343332 2344677777777766654
No 488
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=30.01 E-value=3.4e+02 Score=22.97 Aligned_cols=98 Identities=11% Similarity=0.147 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHH-hcCCC-CChHHHH--HHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHH
Q 012365 180 QITKYVFMALINAYTTCGEFEKARQVVLD-AEIPV-KSRSEVK--SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255 (465)
Q Consensus 180 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~-~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 255 (465)
.+...-+|.|+--|.-...+.+|-+.|.. .+..+ ..+..++ ..-|......|+.+.|++..+.+...-+.-|...+
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~ 102 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELF 102 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHH
Confidence 34444555555445444445555555543 33333 2222222 34566678888888888888877655444444333
Q ss_pred HHHHH----HHHccCcHHHHHHHHHH
Q 012365 256 IALIE----HLNSEGELNRLIQLLEE 277 (465)
Q Consensus 256 ~~ll~----~~~~~g~~~~a~~~~~~ 277 (465)
..|.. -..+.|..++|+++.+.
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 32221 12445556666665554
No 489
>PRK09687 putative lyase; Provisional
Probab=29.23 E-value=4e+02 Score=23.51 Aligned_cols=218 Identities=13% Similarity=0.007 Sum_probs=113.2
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHCCCCCCHHHH
Q 012365 79 PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV----QGALMVLKEMEQANVKPDSQTF 154 (465)
Q Consensus 79 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~~~~p~~~~~ 154 (465)
+|.......+..+...|.. .+...+..+.. .+|...-...+.++.+.|+. .++...+..+... .|+...-
T Consensus 35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 4555666666666666653 33333333433 34555556666666666653 4566666666332 3555555
Q ss_pred HHHHHhhCChhH-----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc
Q 012365 155 SYLIHNCSNEED-----IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALAS 229 (465)
Q Consensus 155 ~~ll~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (465)
...+.+++..+. ...+.+.+...-..++..+-...+.++.+.++. .+...+-..-....+. .-...+.++.+
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d~~~~--VR~~A~~aLg~ 185 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDE-AAIPLLINLLKDPNGD--VRNWAAFALNS 185 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcCCCHH--HHHHHHHHHhc
Confidence 555555544321 112333333333344666666777777777764 4444444322222222 23444555554
Q ss_pred CC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHH
Q 012365 230 HG-RTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLL 308 (465)
Q Consensus 230 ~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 308 (465)
.+ ....+...+..+... ++...-...+.++.+.|+..-...+.+.+.. +. .....+.+....|.. +|...+
T Consensus 186 ~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~-~~---~~~~a~~ALg~ig~~-~a~p~L 257 (280)
T PRK09687 186 NKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKDKRVLSVLIKELKK-GT---VGDLIIEAAGELGDK-TLLPVL 257 (280)
T ss_pred CCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCChhHHHHHHHHHcC-Cc---hHHHHHHHHHhcCCH-hHHHHH
Confidence 42 234555555555532 4666666777777777775444444444433 22 234555666666664 577777
Q ss_pred HHHHH
Q 012365 309 KQLKD 313 (465)
Q Consensus 309 ~~~~~ 313 (465)
..+..
T Consensus 258 ~~l~~ 262 (280)
T PRK09687 258 DTLLY 262 (280)
T ss_pred HHHHh
Confidence 76665
No 490
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=28.90 E-value=3e+02 Score=23.66 Aligned_cols=79 Identities=10% Similarity=0.028 Sum_probs=43.7
Q ss_pred CchhhhHHhHHHHHhhcCCCCcHHHH-HHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCChhhHH
Q 012365 339 PDVQIGLDLLQFIKDELGLPPSRKCL-DFLLGACVNARDLKRAHLIWKEYENAGLPYNVL-SYLWMYKAFLASGNRKSAS 416 (465)
Q Consensus 339 ~~~~~A~~~~~~m~~~~~~~p~~~~~-~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~ 416 (465)
.++..|...|.+.. -+.|+..+| +.=+-++.+..+++.+.+--....+. .||.. ....+..++.....+++|+
T Consensus 24 k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred hhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHHH
Confidence 44555555444444 566666444 33444555566666666655555553 34433 4444555566666667777
Q ss_pred HHHhcc
Q 012365 417 KLLSKM 422 (465)
Q Consensus 417 ~~~~~m 422 (465)
..+.+.
T Consensus 99 ~~Lqra 104 (284)
T KOG4642|consen 99 KVLQRA 104 (284)
T ss_pred HHHHHH
Confidence 666665
No 491
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=28.39 E-value=3.4e+02 Score=22.47 Aligned_cols=49 Identities=6% Similarity=-0.154 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCC
Q 012365 12 ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTE-TINSILHACEESYE 61 (465)
Q Consensus 12 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~ 61 (465)
...+.+++.+.-.|+++.|-+.|.-+.+.. +.|.. .|..-+..+.+.+.
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~ 91 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGE 91 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCC
Confidence 456789999999999999999999998753 33432 34433444444433
No 492
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.38 E-value=5.6e+02 Score=24.87 Aligned_cols=87 Identities=11% Similarity=0.085 Sum_probs=48.9
Q ss_pred hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 012365 74 HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQT 153 (465)
Q Consensus 74 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 153 (465)
+.|+..+......+.. ...|+...|+.+++.....+ ....++..+...+ |+ ++...
T Consensus 195 ~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~~l-------------------g~-~~~~~ 250 (484)
T PRK14956 195 IENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFT--DSKLTGVKIRKMI-------------------GY-HGIEF 250 (484)
T ss_pred HcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhC--CCCcCHHHHHHHh-------------------CC-CCHHH
Confidence 3567777777766654 45599999999999876432 1223444433322 22 23344
Q ss_pred HHHHHHhhCCh---hHHHHHHHHHHHcCCCCCHH
Q 012365 154 FSYLIHNCSNE---EDIIKYYEQLKSAGGQITKY 184 (465)
Q Consensus 154 ~~~ll~~~~~~---~~~~~~~~~~~~~~~~~~~~ 184 (465)
+..++.+.... ..+..+++.+.+.|..|...
T Consensus 251 ~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 251 LTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 44444443322 23555667777777665443
No 493
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.24 E-value=2.3e+02 Score=20.33 Aligned_cols=49 Identities=6% Similarity=-0.092 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCC
Q 012365 376 DLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424 (465)
Q Consensus 376 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 424 (465)
+.....+.+++....+.+.-+.....|.-.|.+.|+.+.|.+-|+.=+.
T Consensus 52 Q~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa 100 (121)
T COG4259 52 QTAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA 100 (121)
T ss_pred HHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh
Confidence 3444455566665554333344445555666677777777776665443
No 494
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.17 E-value=5.8e+02 Score=25.01 Aligned_cols=92 Identities=12% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC-------------CCCCHHHHHHHHHHHHhc
Q 012365 63 NLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMN-------------LMPTASMYNAIMAGYFRK 129 (465)
Q Consensus 63 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-------------~~~~~~~~~~li~~~~~~ 129 (465)
+-...+-..+.+.|+..+......++... .|+...|..++++....| -.++......++.+...
T Consensus 182 ~i~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~- 258 (509)
T PRK14958 182 QIAAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAA- 258 (509)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc-
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 012365 130 KDVQGALMVLKEMEQANVKPDSQTFSYL 157 (465)
Q Consensus 130 g~~~~a~~~~~~m~~~~~~p~~~~~~~l 157 (465)
|+.+.++.++++|.+.|..|.......+
T Consensus 259 ~d~~~~l~~~~~l~~~g~~~~~il~~l~ 286 (509)
T PRK14958 259 KAGDRLLGCVTRLVEQGVDFSNALADLL 286 (509)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHH
No 495
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.87 E-value=5.9e+02 Score=24.66 Aligned_cols=71 Identities=14% Similarity=0.112 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH--HH----HHHHHHHHHHCCCCCCHHH
Q 012365 82 ETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV--QG----ALMVLKEMEQANVKPDSQT 153 (465)
Q Consensus 82 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--~~----a~~~~~~m~~~~~~p~~~~ 153 (465)
.....++.+ .+.++++.|..++.+|...|..|....-..+..++-.-|.- .. +...++...+-|.+-....
T Consensus 245 ~~i~~li~s-i~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~~i~~~e~~~~ 321 (472)
T PRK14962 245 EVVRDYINA-IFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNILREIKFAEEKRL 321 (472)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhCCcchHHH
Confidence 444455554 45588888888888888888766655444444444333322 22 3333334444565544443
No 496
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=26.80 E-value=4.7e+02 Score=23.53 Aligned_cols=91 Identities=12% Similarity=0.111 Sum_probs=63.2
Q ss_pred hHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHH----------HHH--HHHhcCChhh
Q 012365 347 LLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLW----------MYK--AFLASGNRKS 414 (465)
Q Consensus 347 ~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~----------l~~--~~~~~g~~~~ 414 (465)
.++.+-.+.|+.-|...+..++. ...|+..+|...++.+...|-+-+...-+. +.. -.+..+++.+
T Consensus 196 rL~~Ia~~E~v~~d~~al~~I~~--~S~GdLR~Ait~Lqsls~~gk~It~~~~~e~~~GvVp~~~l~~lle~a~S~d~~~ 273 (346)
T KOG0989|consen 196 RLEKIASKEGVDIDDDALKLIAK--ISDGDLRRAITTLQSLSLLGKRITTSLVNEELAGVVPDEKLLDLLELALSADTPN 273 (346)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHH--HcCCcHHHHHHHHHHhhccCcccchHHHHHHHhccCCHHHHHHHHHHHHccChHH
Confidence 34444436688888888887775 456899999998888876554444222222 222 2467899999
Q ss_pred HHHHHhccCCCCCChhHHHHHHHhh
Q 012365 415 ASKLLSKMPKDDPHVRFVIQACKQT 439 (465)
Q Consensus 415 A~~~~~~m~~~~~~~~~~l~~~~~~ 439 (465)
-.++.+++.+.+..+..+++-....
T Consensus 274 ~v~~~Rei~~sg~~~~~lmsQLa~v 298 (346)
T KOG0989|consen 274 TVKRVREIMRSGYSPLQLMSQLAEV 298 (346)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHH
Confidence 9999999999998887777665553
No 497
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.50 E-value=2.1e+02 Score=19.44 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=17.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcC
Q 012365 86 SMISLNVKIKDFDSAYSLLDDLKEMN 111 (465)
Q Consensus 86 ~li~~~~~~g~~~~a~~~~~~m~~~~ 111 (465)
++++.+.++.-.++|+++++.|.++|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 34555666677777777777777766
No 498
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.41 E-value=8.8e+02 Score=26.53 Aligned_cols=18 Identities=33% Similarity=0.226 Sum_probs=13.3
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 012365 191 NAYTTCGEFEKARQVVLD 208 (465)
Q Consensus 191 ~~~~~~g~~~~a~~~~~~ 208 (465)
.+|...|...+|+..|.+
T Consensus 928 ~~yl~tge~~kAl~cF~~ 945 (1480)
T KOG4521|consen 928 IAYLGTGEPVKALNCFQS 945 (1480)
T ss_pred eeeecCCchHHHHHHHHH
Confidence 457777888888888765
No 499
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=26.33 E-value=1.1e+02 Score=20.48 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHH
Q 012365 268 LNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKD 313 (465)
Q Consensus 268 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 313 (465)
+++|..++++....+ ..|++++|+++|....+
T Consensus 3 l~kai~Lv~~A~~eD--------------~~gny~eA~~lY~~ale 34 (75)
T cd02680 3 LERAHFLVTQAFDED--------------EKGNAEEAIELYTEAVE 34 (75)
T ss_pred HHHHHHHHHHHHHhh--------------HhhhHHHHHHHHHHHHH
Confidence 455666666554433 56777777777766655
No 500
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=26.22 E-value=4.3e+02 Score=22.86 Aligned_cols=66 Identities=23% Similarity=0.148 Sum_probs=51.7
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCChhHHH
Q 012365 367 LLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVI 433 (465)
Q Consensus 367 ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l 433 (465)
+-.++...|++-++++--.++..+ .+-|+..|-.-..+.+..=+..+|.+=|.+.++.+|...++.
T Consensus 236 y~QC~L~~~e~yevleh~seiL~~-~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 236 YCQCLLKKEEYYEVLEHCSEILRH-HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 334555678898999888888887 477888888888887777788899999999999988654443
Done!