Query 012365
Match_columns 465
No_of_seqs 521 out of 2284
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 08:02:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012365.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012365hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.2E-35 4E-40 291.6 39.8 414 9-439 82-593 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.2E-31 4E-36 263.1 32.6 388 23-428 65-548 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.2E-31 4.1E-36 252.6 23.0 192 5-196 19-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 5.5E-30 1.9E-34 241.3 25.2 206 28-265 7-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 4.3E-27 1.5E-31 217.9 39.1 376 17-438 5-381 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1.9E-24 6.3E-29 200.2 41.0 357 8-411 29-388 (388)
7 2gw1_A Mitochondrial precursor 99.9 2.2E-23 7.5E-28 200.4 34.6 414 11-438 6-491 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 4.8E-22 1.7E-26 187.7 34.5 359 10-416 25-445 (450)
9 3fp2_A TPR repeat-containing p 99.9 5.8E-21 2E-25 184.6 37.1 408 11-436 25-502 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 1.5E-21 5.1E-26 184.3 32.2 341 29-437 10-370 (450)
11 2gw1_A Mitochondrial precursor 99.9 2.7E-21 9.2E-26 185.8 29.4 379 46-439 6-458 (514)
12 3ieg_A DNAJ homolog subfamily 99.9 6.7E-19 2.3E-23 160.7 35.6 335 49-438 6-348 (359)
13 3fp2_A TPR repeat-containing p 99.8 2.8E-18 9.6E-23 165.7 32.8 378 46-439 25-471 (537)
14 3hym_B Cell division cycle pro 99.8 3.9E-17 1.3E-21 147.1 29.9 291 79-438 20-312 (330)
15 3spa_A Mtrpol, DNA-directed RN 99.8 5.3E-20 1.8E-24 178.6 11.0 159 46-208 127-306 (1134)
16 3hym_B Cell division cycle pro 99.8 3.8E-17 1.3E-21 147.2 28.3 287 45-411 21-320 (330)
17 3spa_A Mtrpol, DNA-directed RN 99.8 1.1E-19 3.6E-24 176.5 10.8 148 11-163 127-284 (1134)
18 2xm6_A Protein corresponding t 99.8 8.6E-15 3E-19 139.4 43.0 368 28-428 24-435 (490)
19 2ooe_A Cleavage stimulation fa 99.8 3.1E-15 1.1E-19 144.0 40.3 405 10-427 12-494 (530)
20 4g1t_A Interferon-induced prot 99.8 2.5E-15 8.5E-20 142.6 34.9 366 46-431 51-465 (472)
21 1fch_A Peroxisomal targeting s 99.8 5.8E-17 2E-21 148.5 20.5 292 55-423 34-357 (368)
22 3ieg_A DNAJ homolog subfamily 99.8 2.8E-15 9.7E-20 136.5 31.6 298 10-314 2-335 (359)
23 1fch_A Peroxisomal targeting s 99.8 1.9E-16 6.6E-21 145.0 23.4 252 21-278 35-311 (368)
24 1b89_A Protein (clathrin heavy 99.7 3.5E-18 1.2E-22 153.8 10.8 221 23-313 15-235 (449)
25 4eqf_A PEX5-related protein; a 99.7 8.6E-17 3E-21 147.2 19.9 257 47-309 66-351 (365)
26 4eqf_A PEX5-related protein; a 99.7 7.6E-17 2.6E-21 147.6 18.7 268 80-423 64-354 (365)
27 1b89_A Protein (clathrin heavy 99.7 5E-16 1.7E-20 139.9 20.4 363 9-420 30-412 (449)
28 2ooe_A Cleavage stimulation fa 99.7 1.5E-13 5.3E-18 132.1 39.1 378 34-427 2-456 (530)
29 3cv0_A Peroxisome targeting si 99.7 1.4E-15 4.7E-20 136.8 22.9 262 13-311 23-312 (327)
30 2xm6_A Protein corresponding t 99.7 1.9E-13 6.6E-18 130.1 38.2 370 9-407 37-451 (490)
31 3cv0_A Peroxisome targeting si 99.7 6.1E-15 2.1E-19 132.5 25.6 279 46-424 21-314 (327)
32 3mkr_A Coatomer subunit epsilo 99.7 7.3E-15 2.5E-19 129.3 23.8 236 185-434 36-273 (291)
33 3mkr_A Coatomer subunit epsilo 99.7 1.1E-14 3.6E-19 128.2 24.2 56 86-145 39-94 (291)
34 1xi4_A Clathrin heavy chain; a 99.7 6.9E-13 2.4E-17 133.5 37.3 354 16-421 1054-1441(1630)
35 1xi4_A Clathrin heavy chain; a 99.7 4.6E-12 1.6E-16 127.7 42.0 328 45-429 984-1313(1630)
36 3uq3_A Heat shock protein STI1 99.6 7.1E-14 2.4E-18 120.9 20.0 226 183-426 5-237 (258)
37 2pl2_A Hypothetical conserved 99.6 1.3E-13 4.5E-18 115.8 20.6 134 8-144 2-146 (217)
38 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.8E-13 6.2E-18 119.6 20.2 223 21-281 15-244 (275)
39 2ho1_A Type 4 fimbrial biogene 99.6 1.2E-12 4.1E-17 112.8 24.9 201 12-247 38-239 (252)
40 3uq3_A Heat shock protein STI1 99.6 7.1E-13 2.4E-17 114.5 22.7 221 12-278 6-233 (258)
41 2pl2_A Hypothetical conserved 99.6 4.8E-13 1.7E-17 112.3 20.8 199 43-279 2-212 (217)
42 2vq2_A PILW, putative fimbrial 99.6 2.4E-12 8.4E-17 108.6 24.8 209 10-255 7-218 (225)
43 3u4t_A TPR repeat-containing p 99.5 2E-13 6.7E-18 119.2 17.5 245 184-438 4-263 (272)
44 4g1t_A Interferon-induced prot 99.5 4.3E-12 1.5E-16 120.2 27.0 322 47-391 95-460 (472)
45 2q7f_A YRRB protein; TPR, prot 99.5 8.9E-13 3E-17 112.8 20.3 202 10-247 22-223 (243)
46 2vq2_A PILW, putative fimbrial 99.5 3.4E-12 1.2E-16 107.7 22.8 202 45-280 7-210 (225)
47 2ho1_A Type 4 fimbrial biogene 99.5 3.6E-12 1.2E-16 109.8 22.8 199 47-279 38-236 (252)
48 2h6f_A Protein farnesyltransfe 99.5 3.9E-12 1.3E-16 115.7 22.5 229 11-278 97-344 (382)
49 1ouv_A Conserved hypothetical 99.5 6.9E-11 2.4E-15 103.1 29.1 192 10-247 5-216 (273)
50 3u4t_A TPR repeat-containing p 99.5 4.9E-12 1.7E-16 110.2 21.8 231 13-279 5-248 (272)
51 1xnf_A Lipoprotein NLPI; TPR, 99.5 4.3E-12 1.5E-16 110.8 20.7 55 361-419 215-269 (275)
52 1ouv_A Conserved hypothetical 99.5 1.3E-10 4.5E-15 101.3 30.1 192 10-247 37-252 (273)
53 2q7f_A YRRB protein; TPR, prot 99.5 1E-12 3.5E-17 112.5 16.0 209 182-434 22-231 (243)
54 3e4b_A ALGK; tetratricopeptide 99.5 8.5E-12 2.9E-16 117.0 22.7 350 17-391 9-388 (452)
55 3e4b_A ALGK; tetratricopeptide 99.5 2.7E-11 9.2E-16 113.6 25.4 349 52-428 9-390 (452)
56 4e6h_A MRNA 3'-END-processing 99.5 9.6E-10 3.3E-14 106.8 36.7 412 8-428 63-573 (679)
57 2h6f_A Protein farnesyltransfe 99.5 2.3E-11 7.7E-16 110.7 23.8 244 46-327 97-361 (382)
58 3sf4_A G-protein-signaling mod 99.4 1.2E-11 3.9E-16 114.6 22.0 302 79-414 7-365 (406)
59 4a1s_A PINS, partner of inscut 99.4 5E-12 1.7E-16 117.4 17.1 272 13-313 50-371 (411)
60 4abn_A Tetratricopeptide repea 99.4 1.5E-11 5E-16 116.1 20.3 221 199-424 84-320 (474)
61 3ro2_A PINS homolog, G-protein 99.4 3.3E-11 1.1E-15 108.3 21.5 274 83-425 7-332 (338)
62 4a1s_A PINS, partner of inscut 99.4 6.9E-12 2.4E-16 116.5 16.8 277 83-428 50-375 (411)
63 2ond_A Cleavage stimulation fa 99.4 4.8E-11 1.6E-15 106.0 21.0 211 234-459 81-300 (308)
64 3sf4_A G-protein-signaling mod 99.4 3.9E-11 1.3E-15 111.1 20.2 277 113-424 6-335 (406)
65 2ond_A Cleavage stimulation fa 99.4 6E-10 2E-14 98.9 26.7 234 11-281 8-270 (308)
66 3ro2_A PINS homolog, G-protein 99.4 2.4E-11 8.1E-16 109.2 17.5 273 12-313 6-331 (338)
67 3vtx_A MAMA; tetratricopeptide 99.4 2.8E-10 9.4E-15 92.7 21.9 164 9-208 3-166 (184)
68 3vtx_A MAMA; tetratricopeptide 99.4 2E-10 6.8E-15 93.5 21.0 167 45-247 4-171 (184)
69 4abn_A Tetratricopeptide repea 99.3 7.6E-11 2.6E-15 111.2 19.7 212 61-278 83-318 (474)
70 3ulq_A Response regulator aspa 99.3 1.4E-10 4.9E-15 106.5 19.3 229 189-424 109-367 (383)
71 3ulq_A Response regulator aspa 99.3 1.2E-09 4.2E-14 100.2 24.9 301 22-390 23-368 (383)
72 3nf1_A KLC 1, kinesin light ch 99.3 3.9E-11 1.3E-15 106.6 14.0 210 183-424 27-306 (311)
73 3nf1_A KLC 1, kinesin light ch 99.3 1.3E-10 4.4E-15 103.2 16.7 245 10-280 26-306 (311)
74 3as5_A MAMA; tetratricopeptide 99.2 1.4E-09 4.7E-14 88.3 19.6 162 11-208 8-169 (186)
75 4e6h_A MRNA 3'-END-processing 99.2 2.8E-07 9.7E-12 89.6 38.5 388 27-427 48-535 (679)
76 3as5_A MAMA; tetratricopeptide 99.2 1.5E-09 5.1E-14 88.1 19.3 165 47-246 9-173 (186)
77 3q15_A PSP28, response regulat 99.2 3E-09 1E-13 97.4 21.4 33 7-39 6-40 (378)
78 1hz4_A MALT regulatory protein 99.2 7.8E-08 2.7E-12 87.8 30.7 232 54-313 22-281 (373)
79 3q15_A PSP28, response regulat 99.2 4.6E-09 1.6E-13 96.2 21.8 229 189-424 107-364 (378)
80 1hz4_A MALT regulatory protein 99.2 1.3E-08 4.4E-13 93.0 24.7 270 16-313 19-321 (373)
81 2fo7_A Synthetic consensus TPR 99.2 3.6E-09 1.2E-13 80.7 17.5 131 12-145 2-132 (136)
82 4gyw_A UDP-N-acetylglucosamine 99.1 2.2E-09 7.7E-14 105.5 19.4 166 7-208 4-170 (723)
83 4i17_A Hypothetical protein; T 99.1 2.2E-08 7.4E-13 84.5 23.2 134 9-144 5-145 (228)
84 4gyw_A UDP-N-acetylglucosamine 99.1 3.1E-09 1E-13 104.5 20.0 165 45-245 8-173 (723)
85 3mv2_B Coatomer subunit epsilo 99.1 1.4E-08 4.8E-13 87.8 20.3 190 236-434 85-291 (310)
86 4i17_A Hypothetical protein; T 99.1 2.3E-08 8E-13 84.3 21.1 198 223-436 13-220 (228)
87 3edt_B KLC 2, kinesin light ch 99.1 2.2E-09 7.6E-14 93.6 15.1 231 58-313 13-280 (283)
88 3edt_B KLC 2, kinesin light ch 99.1 1.2E-09 4.1E-14 95.3 12.7 176 217-424 43-280 (283)
89 3mv2_B Coatomer subunit epsilo 99.0 8.3E-08 2.9E-12 82.9 20.8 173 17-208 51-236 (310)
90 3qky_A Outer membrane assembly 99.0 1.1E-07 3.9E-12 81.9 20.5 99 182-280 14-125 (261)
91 2fo7_A Synthetic consensus TPR 98.9 6.2E-08 2.1E-12 73.7 16.4 59 84-143 4-62 (136)
92 1qqe_A Vesicular transport pro 98.9 3.8E-08 1.3E-12 86.5 16.2 206 225-438 45-282 (292)
93 3qky_A Outer membrane assembly 98.9 7.5E-08 2.6E-12 83.1 16.4 183 219-429 17-228 (261)
94 2pzi_A Probable serine/threoni 98.9 6E-08 2.1E-12 95.7 17.7 174 22-232 402-583 (681)
95 1qqe_A Vesicular transport pro 98.9 8.4E-08 2.9E-12 84.2 16.7 207 13-245 39-268 (292)
96 2uy1_A Cleavage stimulation fa 98.9 3.2E-06 1.1E-10 79.7 28.3 371 11-423 15-411 (493)
97 2yhc_A BAMD, UPF0169 lipoprote 98.8 7.9E-08 2.7E-12 80.8 14.7 183 220-428 7-216 (225)
98 3urz_A Uncharacterized protein 98.8 4.2E-07 1.4E-11 75.3 18.4 60 85-145 58-117 (208)
99 3urz_A Uncharacterized protein 98.8 1.2E-07 4.3E-12 78.5 14.0 180 220-429 7-190 (208)
100 2pzi_A Probable serine/threoni 98.7 1.6E-07 5.6E-12 92.6 15.6 166 263-439 402-577 (681)
101 4ga2_A E3 SUMO-protein ligase 98.7 2.5E-08 8.5E-13 77.8 7.7 91 339-433 45-137 (150)
102 1hh8_A P67PHOX, NCF-2, neutrop 98.7 6.5E-07 2.2E-11 74.3 17.0 128 12-145 7-150 (213)
103 3rjv_A Putative SEL1 repeat pr 98.7 2.8E-06 9.5E-11 70.5 20.7 178 28-248 3-199 (212)
104 2vsy_A XCC0866; transferase, g 98.7 3.9E-07 1.3E-11 88.3 17.2 119 24-145 2-120 (568)
105 3qou_A Protein YBBN; thioredox 98.7 3.4E-07 1.2E-11 80.0 15.4 94 47-143 118-212 (287)
106 4ga2_A E3 SUMO-protein ligase 98.7 1.2E-07 4.1E-12 74.0 11.1 124 18-144 4-128 (150)
107 3qou_A Protein YBBN; thioredox 98.7 3.5E-07 1.2E-11 80.0 15.2 162 78-243 114-281 (287)
108 2yhc_A BAMD, UPF0169 lipoprote 98.7 3.2E-06 1.1E-10 70.9 20.7 187 182-390 3-213 (225)
109 1a17_A Serine/threonine protei 98.7 7.7E-07 2.6E-11 70.4 16.0 130 11-143 13-144 (166)
110 3dra_A Protein farnesyltransfe 98.7 1E-05 3.5E-10 70.6 23.4 222 21-279 43-285 (306)
111 1na0_A Designed protein CTPR3; 98.7 8.1E-07 2.8E-11 66.3 14.7 114 11-127 9-122 (125)
112 2vsy_A XCC0866; transferase, g 98.7 5.8E-07 2E-11 87.0 17.0 153 59-247 2-158 (568)
113 2uy1_A Cleavage stimulation fa 98.7 5.9E-05 2E-09 71.1 29.9 339 7-389 43-412 (493)
114 2r5s_A Uncharacterized protein 98.7 3.2E-07 1.1E-11 73.7 12.7 160 14-208 9-169 (176)
115 3rjv_A Putative SEL1 repeat pr 98.7 3.1E-06 1E-10 70.2 18.9 171 65-279 5-195 (212)
116 4gco_A Protein STI-1; structur 98.6 1.3E-06 4.4E-11 65.6 14.3 94 49-144 16-109 (126)
117 2vyi_A SGTA protein; chaperone 98.6 1.3E-06 4.4E-11 65.8 14.1 120 10-132 11-130 (131)
118 2lni_A Stress-induced-phosphop 98.6 1E-06 3.5E-11 66.7 13.6 120 8-130 13-132 (133)
119 3dra_A Protein farnesyltransfe 98.6 2.2E-06 7.7E-11 74.7 16.9 226 198-428 48-291 (306)
120 2r5s_A Uncharacterized protein 98.6 4.3E-07 1.5E-11 72.9 11.3 161 220-423 9-171 (176)
121 2e2e_A Formate-dependent nitri 98.6 5.3E-07 1.8E-11 72.5 11.6 122 21-145 20-144 (177)
122 3gyz_A Chaperone protein IPGC; 98.6 5.1E-07 1.7E-11 70.1 10.7 104 45-152 35-138 (151)
123 2c2l_A CHIP, carboxy terminus 98.6 1.8E-06 6E-11 75.2 15.3 190 220-424 7-198 (281)
124 4gco_A Protein STI-1; structur 98.6 3E-06 1E-10 63.6 14.5 114 7-123 8-122 (126)
125 3u3w_A Transcriptional activat 98.5 2.7E-05 9.3E-10 68.1 22.6 164 189-389 81-265 (293)
126 2ifu_A Gamma-SNAP; membrane fu 98.5 9.4E-07 3.2E-11 78.1 13.0 89 339-428 129-226 (307)
127 1p5q_A FKBP52, FK506-binding p 98.5 2.4E-06 8.3E-11 76.4 15.5 131 11-143 147-292 (336)
128 2vgx_A Chaperone SYCD; alterna 98.5 7.6E-07 2.6E-11 69.1 9.9 98 45-144 20-117 (148)
129 2c2l_A CHIP, carboxy terminus 98.5 1.7E-06 6E-11 75.2 13.2 98 45-144 3-100 (281)
130 1hh8_A P67PHOX, NCF-2, neutrop 98.5 2.7E-05 9.1E-10 64.4 19.8 138 48-208 8-146 (213)
131 3gyz_A Chaperone protein IPGC; 98.5 2.1E-06 7.3E-11 66.5 12.0 109 5-117 29-138 (151)
132 3u3w_A Transcriptional activat 98.5 0.00021 7.4E-09 62.3 26.3 165 52-244 81-264 (293)
133 2ifu_A Gamma-SNAP; membrane fu 98.5 1.2E-05 4E-10 71.1 17.9 88 55-143 45-142 (307)
134 1elw_A TPR1-domain of HOP; HOP 98.5 8.5E-06 2.9E-10 59.8 14.6 98 11-110 4-101 (118)
135 4f3v_A ESX-1 secretion system 98.5 2.7E-06 9.1E-11 72.6 12.9 134 293-436 110-247 (282)
136 1na0_A Designed protein CTPR3; 98.4 1.1E-05 3.6E-10 60.0 14.2 98 46-145 9-106 (125)
137 3q7a_A Farnesyltransferase alp 98.4 9.3E-05 3.2E-09 65.3 22.0 130 13-145 56-196 (349)
138 1a17_A Serine/threonine protei 98.4 1.7E-05 5.9E-10 62.5 16.1 98 46-145 13-110 (166)
139 2qfc_A PLCR protein; TPR, HTH, 98.4 3.6E-05 1.2E-09 67.4 18.9 168 185-389 77-265 (293)
140 2qfc_A PLCR protein; TPR, HTH, 98.4 2.6E-05 8.8E-10 68.3 18.0 167 220-423 78-264 (293)
141 3upv_A Heat shock protein STI1 98.3 1.3E-05 4.6E-10 59.9 13.3 95 48-144 6-100 (126)
142 2dba_A Smooth muscle cell asso 98.3 3.1E-05 1E-09 59.6 15.7 99 9-110 26-128 (148)
143 3gw4_A Uncharacterized protein 98.3 4.3E-06 1.5E-10 68.6 11.3 86 339-424 80-175 (203)
144 2xcb_A PCRH, regulatory protei 98.3 6.2E-06 2.1E-10 63.4 11.4 91 16-108 23-113 (142)
145 2e2e_A Formate-dependent nitri 98.3 1.9E-06 6.5E-11 69.2 8.8 125 296-429 21-148 (177)
146 3upv_A Heat shock protein STI1 98.3 1.5E-05 5.2E-10 59.6 13.4 99 10-110 3-101 (126)
147 3gw4_A Uncharacterized protein 98.3 2.1E-05 7E-10 64.4 15.3 159 58-245 4-175 (203)
148 2fbn_A 70 kDa peptidylprolyl i 98.3 1.4E-05 4.8E-10 65.3 14.2 97 46-144 38-150 (198)
149 2lni_A Stress-induced-phosphop 98.3 1.8E-05 6.2E-10 59.6 13.8 101 43-145 13-113 (133)
150 3q49_B STIP1 homology and U bo 98.3 1E-05 3.5E-10 61.5 12.4 98 10-109 8-105 (137)
151 4f3v_A ESX-1 secretion system 98.3 1.9E-05 6.6E-10 67.3 15.0 204 93-314 18-237 (282)
152 2xcb_A PCRH, regulatory protei 98.3 1.2E-05 4.1E-10 61.7 12.7 98 46-145 18-115 (142)
153 2vgx_A Chaperone SYCD; alterna 98.3 9.1E-06 3.1E-10 62.9 12.0 102 7-110 16-118 (148)
154 3q49_B STIP1 homology and U bo 98.3 2.1E-05 7.3E-10 59.7 14.0 99 44-144 7-105 (137)
155 2kck_A TPR repeat; tetratricop 98.3 1.2E-05 4.2E-10 58.3 11.6 98 11-110 6-106 (112)
156 1elr_A TPR2A-domain of HOP; HO 98.3 1E-05 3.5E-10 60.7 11.2 108 12-122 5-118 (131)
157 2vyi_A SGTA protein; chaperone 98.3 2.6E-05 8.9E-10 58.4 13.5 99 45-145 11-109 (131)
158 3sz7_A HSC70 cochaperone (SGT) 98.3 1.4E-05 4.8E-10 63.1 12.3 99 10-110 10-108 (164)
159 1elw_A TPR1-domain of HOP; HOP 98.3 3.6E-05 1.2E-09 56.4 13.8 99 45-145 3-101 (118)
160 2kck_A TPR repeat; tetratricop 98.3 1.2E-05 4E-10 58.5 10.9 99 45-145 5-106 (112)
161 3sz7_A HSC70 cochaperone (SGT) 98.2 2.3E-05 7.8E-10 61.8 13.0 99 45-145 10-108 (164)
162 3dss_A Geranylgeranyl transfer 98.2 0.0012 4E-08 58.1 24.2 120 23-145 41-174 (331)
163 4gcn_A Protein STI-1; structur 98.2 3.6E-05 1.2E-09 57.7 12.7 95 49-144 11-111 (127)
164 4gcn_A Protein STI-1; structur 98.2 2.5E-05 8.4E-10 58.6 11.6 109 11-122 8-122 (127)
165 3q7a_A Farnesyltransferase alp 98.2 0.0012 4E-08 58.4 23.6 87 57-145 65-154 (349)
166 1elr_A TPR2A-domain of HOP; HO 98.2 3E-05 1E-09 58.0 12.0 107 46-155 4-116 (131)
167 2dba_A Smooth muscle cell asso 98.2 2.8E-05 9.5E-10 59.8 11.9 94 338-435 41-138 (148)
168 1hxi_A PEX5, peroxisome target 98.2 2.5E-05 8.6E-10 58.0 11.0 89 53-143 24-112 (121)
169 1p5q_A FKBP52, FK506-binding p 98.1 2.1E-05 7.3E-10 70.3 12.2 143 252-423 147-292 (336)
170 1wao_1 Serine/threonine protei 98.1 1.1E-05 3.7E-10 75.9 10.5 121 290-420 11-134 (477)
171 1hxi_A PEX5, peroxisome target 98.1 2.6E-05 8.8E-10 57.9 10.4 96 13-110 19-114 (121)
172 1wao_1 Serine/threonine protei 98.1 1.3E-05 4.3E-10 75.5 10.4 122 17-141 12-135 (477)
173 3k9i_A BH0479 protein; putativ 98.1 3.5E-06 1.2E-10 62.3 5.3 91 338-430 3-95 (117)
174 4b4t_Q 26S proteasome regulato 98.1 0.00011 3.9E-09 68.1 16.9 201 18-245 11-244 (434)
175 4b4t_Q 26S proteasome regulato 98.0 0.0011 3.9E-08 61.2 22.6 96 183-278 135-242 (434)
176 2xev_A YBGF; tetratricopeptide 98.0 0.00022 7.5E-09 53.2 14.3 92 17-110 8-105 (129)
177 2fbn_A 70 kDa peptidylprolyl i 98.0 5.5E-05 1.9E-09 61.8 11.6 88 338-428 101-189 (198)
178 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 7.6E-05 2.6E-09 69.8 13.9 123 12-136 269-405 (457)
179 3ro3_A PINS homolog, G-protein 98.0 4.1E-05 1.4E-09 59.8 10.2 134 11-144 9-157 (164)
180 3k9i_A BH0479 protein; putativ 98.0 1.4E-05 4.7E-10 59.0 6.9 86 24-110 3-90 (117)
181 3dss_A Geranylgeranyl transfer 98.0 0.00088 3E-08 58.8 19.1 226 195-428 41-307 (331)
182 1ihg_A Cyclophilin 40; ppiase 98.0 9E-05 3.1E-09 67.0 13.3 123 12-136 224-361 (370)
183 2xev_A YBGF; tetratricopeptide 97.9 0.00022 7.4E-09 53.3 12.4 94 50-145 6-105 (129)
184 3rkv_A Putative peptidylprolyl 97.8 0.0002 7E-09 56.1 11.6 64 81-145 63-126 (162)
185 3rkv_A Putative peptidylprolyl 97.8 0.00025 8.4E-09 55.6 12.0 100 11-111 11-127 (162)
186 2if4_A ATFKBP42; FKBP-like, al 97.8 6.6E-05 2.3E-09 67.1 9.4 95 11-108 179-291 (338)
187 1klx_A Cysteine rich protein B 97.8 0.00092 3.2E-08 50.7 14.3 113 24-147 8-128 (138)
188 3ro3_A PINS homolog, G-protein 97.8 9.9E-05 3.4E-09 57.5 9.2 86 339-424 63-157 (164)
189 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 2.9E-05 9.9E-10 72.7 6.5 91 339-430 282-385 (457)
190 3n71_A Histone lysine methyltr 97.7 0.00015 5E-09 67.9 10.6 124 21-144 319-463 (490)
191 1ihg_A Cyclophilin 40; ppiase 97.7 0.00052 1.8E-08 62.0 13.3 73 339-415 287-360 (370)
192 2hr2_A Hypothetical protein; a 97.7 0.00072 2.5E-08 51.9 11.9 95 49-144 14-130 (159)
193 2hr2_A Hypothetical protein; a 97.6 0.00079 2.7E-08 51.7 11.4 98 12-110 12-131 (159)
194 3n71_A Histone lysine methyltr 97.6 0.00031 1.1E-08 65.6 11.1 130 91-245 319-463 (490)
195 1zu2_A Mitochondrial import re 97.6 0.00014 4.9E-09 55.7 6.9 93 339-435 16-130 (158)
196 2kat_A Uncharacterized protein 97.6 0.00036 1.2E-08 50.9 8.6 81 343-427 3-84 (115)
197 2l6j_A TPR repeat-containing p 97.6 0.00041 1.4E-08 50.0 8.8 69 360-429 3-71 (111)
198 2l6j_A TPR repeat-containing p 97.6 0.00042 1.5E-08 49.9 8.9 91 10-102 3-99 (111)
199 2kat_A Uncharacterized protein 97.6 0.00069 2.4E-08 49.4 10.0 77 65-143 4-80 (115)
200 1na3_A Designed protein CTPR2; 97.5 0.0012 4.2E-08 45.4 10.5 62 48-110 11-72 (91)
201 1dce_A Protein (RAB geranylger 97.5 0.0023 7.9E-08 61.3 15.1 171 232-414 44-244 (567)
202 2if4_A ATFKBP42; FKBP-like, al 97.5 0.00028 9.7E-09 63.0 8.2 92 337-432 191-300 (338)
203 1dce_A Protein (RAB geranylger 97.5 0.0078 2.7E-07 57.6 18.5 118 25-145 43-173 (567)
204 1na3_A Designed protein CTPR2; 97.4 0.0014 4.8E-08 45.1 9.9 83 10-94 8-90 (91)
205 1zu2_A Mitochondrial import re 97.4 0.00086 2.9E-08 51.4 8.3 87 22-110 13-120 (158)
206 3ma5_A Tetratricopeptide repea 97.3 0.00087 3E-08 47.5 7.6 67 360-427 6-72 (100)
207 3ma5_A Tetratricopeptide repea 97.2 0.0031 1E-07 44.5 9.1 63 80-143 6-68 (100)
208 1klx_A Cysteine rich protein B 97.1 0.022 7.6E-07 42.9 14.4 80 59-146 8-91 (138)
209 2kc7_A BFR218_protein; tetratr 97.0 0.00092 3.2E-08 47.1 5.3 60 369-429 8-68 (99)
210 3ly7_A Transcriptional activat 97.0 0.02 6.9E-07 50.6 14.4 75 358-434 274-348 (372)
211 3ly7_A Transcriptional activat 97.0 0.02 6.8E-07 50.6 14.3 149 6-159 189-351 (372)
212 3bee_A Putative YFRE protein; 96.9 0.0036 1.2E-07 43.4 7.5 69 359-428 4-75 (93)
213 1pc2_A Mitochondria fission pr 96.8 0.0025 8.6E-08 48.3 6.4 89 339-430 12-105 (152)
214 3qww_A SET and MYND domain-con 96.8 0.0021 7.2E-08 59.0 6.9 87 338-424 311-410 (433)
215 3qww_A SET and MYND domain-con 96.6 0.0068 2.3E-07 55.6 8.6 62 82-143 341-409 (433)
216 3qwp_A SET and MYND domain-con 96.4 0.016 5.5E-07 53.3 10.1 92 53-144 294-399 (429)
217 2kc7_A BFR218_protein; tetratr 96.4 0.021 7.2E-07 39.8 8.6 52 57-109 11-63 (99)
218 2v5f_A Prolyl 4-hydroxylase su 96.4 0.013 4.3E-07 41.7 7.3 78 360-437 4-87 (104)
219 3qwp_A SET and MYND domain-con 96.4 0.018 6.3E-07 52.8 10.0 92 18-109 294-399 (429)
220 3bee_A Putative YFRE protein; 95.8 0.091 3.1E-06 36.2 9.3 65 79-144 4-71 (93)
221 3mkq_A Coatomer beta'-subunit; 95.8 0.34 1.2E-05 48.7 17.3 152 20-207 608-760 (814)
222 1nzn_A CGI-135 protein, fissio 95.5 0.057 2E-06 39.3 7.4 88 340-430 16-108 (126)
223 3mkq_A Coatomer beta'-subunit; 95.5 0.46 1.6E-05 47.7 16.8 24 253-276 682-705 (814)
224 2v5f_A Prolyl 4-hydroxylase su 95.5 0.15 5.3E-06 35.9 9.6 66 10-75 4-75 (104)
225 1pc2_A Mitochondria fission pr 95.5 0.082 2.8E-06 40.0 8.3 84 25-110 12-100 (152)
226 4h7y_A Dual specificity protei 95.1 0.39 1.3E-05 36.0 10.5 62 375-437 74-135 (161)
227 1wy6_A Hypothetical protein ST 94.9 0.77 2.6E-05 33.6 14.1 131 14-148 8-157 (172)
228 3mkq_B Coatomer subunit alpha; 94.8 1.1 3.8E-05 34.8 15.0 45 229-279 17-61 (177)
229 3o48_A Mitochondria fission 1 94.7 0.17 5.7E-06 37.0 7.8 76 356-431 35-113 (134)
230 3u64_A Protein TP_0956; tetrat 94.7 0.15 5.2E-06 43.2 8.6 86 340-428 178-272 (301)
231 1wy6_A Hypothetical protein ST 94.2 1.1 3.9E-05 32.8 15.9 137 94-248 20-156 (172)
232 1y8m_A FIS1; mitochondria, unk 94.2 0.4 1.4E-05 35.6 8.9 73 358-430 36-111 (144)
233 3u64_A Protein TP_0956; tetrat 93.9 0.62 2.1E-05 39.5 10.7 63 48-110 201-269 (301)
234 1nzn_A CGI-135 protein, fissio 93.7 0.68 2.3E-05 33.6 9.3 91 18-110 8-103 (126)
235 2ff4_A Probable regulatory pro 93.3 1.6 5.4E-05 39.4 13.3 72 83-155 173-249 (388)
236 4h7y_A Dual specificity protei 93.1 1.3 4.4E-05 33.2 9.9 30 10-39 12-47 (161)
237 1qsa_A Protein (soluble lytic 92.9 7 0.00024 37.5 23.6 130 298-434 227-356 (618)
238 2ff4_A Probable regulatory pro 92.8 0.58 2E-05 42.2 9.7 71 118-189 173-251 (388)
239 1v54_E Cytochrome C oxidase po 92.2 1.7 5.9E-05 29.8 8.8 45 64-108 28-72 (109)
240 4gns_B Protein CSD3, chitin bi 92.0 1.5 5E-05 43.1 11.8 53 371-424 347-399 (754)
241 1v54_E Cytochrome C oxidase po 91.4 0.99 3.4E-05 31.0 6.9 59 344-404 29-87 (109)
242 3mkq_B Coatomer subunit alpha; 91.4 4.1 0.00014 31.6 17.6 101 90-208 14-114 (177)
243 3lvg_A Clathrin heavy chain 1; 90.5 7.1E-05 2.4E-09 67.4 -17.9 223 11-265 54-276 (624)
244 4ady_A RPN2, 26S proteasome re 90.3 17 0.00057 36.8 20.5 25 14-38 233-257 (963)
245 3o48_A Mitochondria fission 1 89.8 2.5 8.6E-05 30.9 8.4 76 319-397 37-112 (134)
246 4gns_B Protein CSD3, chitin bi 89.7 2.2 7.4E-05 42.0 10.6 129 14-143 251-398 (754)
247 2y69_E Cytochrome C oxidase su 89.1 4 0.00014 29.8 8.8 80 46-126 51-132 (152)
248 1y8m_A FIS1; mitochondria, unk 88.7 4.4 0.00015 30.0 9.1 74 320-396 37-110 (144)
249 3lpz_A GET4 (YOR164C homolog); 86.6 15 0.00053 31.9 19.7 111 184-308 36-159 (336)
250 3ffl_A Anaphase-promoting comp 86.5 9.2 0.00031 29.2 10.3 72 363-434 65-162 (167)
251 2y69_E Cytochrome C oxidase su 85.7 8.5 0.00029 28.1 9.1 72 89-161 60-132 (152)
252 1wdy_A 2-5A-dependent ribonucl 85.0 3.4 0.00011 34.9 8.3 85 190-276 152-240 (285)
253 4fhn_B Nucleoporin NUP120; pro 84.5 22 0.00076 37.3 15.4 99 182-280 841-966 (1139)
254 2qx5_A Nucleoporin NIC96; mRNA 83.9 30 0.001 33.5 14.6 80 122-209 300-382 (661)
255 3lvg_A Clathrin heavy chain 1; 83.6 0.0024 8.1E-08 57.9 -12.3 204 183-424 54-257 (624)
256 4fhn_B Nucleoporin NUP120; pro 83.3 48 0.0016 34.7 17.8 183 223-419 818-1043(1139)
257 1wdy_A 2-5A-dependent ribonucl 79.7 8.3 0.00028 32.3 8.7 86 372-457 190-283 (285)
258 4b4t_R RPN7, 26S proteasome re 79.2 37 0.0013 30.8 14.7 94 220-313 134-236 (429)
259 1zbp_A Hypothetical protein VP 79.0 4.8 0.00016 33.6 6.4 50 338-390 10-60 (273)
260 2p58_C Putative type III secre 78.9 13 0.00045 25.5 7.9 50 56-111 50-99 (116)
261 3ffl_A Anaphase-promoting comp 78.7 10 0.00034 29.0 7.6 70 5-74 12-91 (167)
262 4b4t_R RPN7, 26S proteasome re 78.4 17 0.00057 33.2 10.6 97 48-144 133-236 (429)
263 2uwj_G Type III export protein 78.1 12 0.00042 25.5 6.9 50 56-111 49-98 (115)
264 4b4t_P 26S proteasome regulato 77.4 43 0.0015 30.6 19.3 167 256-427 141-326 (445)
265 1zbp_A Hypothetical protein VP 76.3 8.5 0.00029 32.1 7.1 49 23-72 9-57 (273)
266 3esl_A Checkpoint serine/threo 76.1 11 0.00038 29.8 7.4 75 356-430 72-149 (202)
267 1qsa_A Protein (soluble lytic 75.8 58 0.002 31.3 34.6 338 50-424 76-441 (618)
268 2ion_A PDCD4, programmed cell 74.5 20 0.00069 27.0 8.3 67 185-251 11-79 (152)
269 2nsz_A Programmed cell death p 74.4 22 0.00076 25.8 9.7 66 186-251 10-77 (129)
270 4b4t_P 26S proteasome regulato 74.3 53 0.0018 30.0 18.8 57 187-243 141-203 (445)
271 4ady_A RPN2, 26S proteasome re 72.2 88 0.003 31.7 30.9 82 339-423 538-621 (963)
272 3eiq_C Programmed cell death p 70.2 57 0.0019 28.7 15.0 64 186-249 220-285 (358)
273 2d2s_A Exocyst complex compone 63.4 46 0.0016 27.2 8.9 21 18-38 25-45 (235)
274 3txn_A 26S proteasome regulato 63.4 83 0.0029 28.1 18.3 164 185-352 21-208 (394)
275 2wvi_A Mitotic checkpoint seri 62.9 48 0.0017 25.2 9.1 73 356-431 58-131 (164)
276 2wpv_A GET4, UPF0363 protein Y 58.8 88 0.003 26.9 19.3 26 182-207 133-158 (312)
277 4a1g_A Mitotic checkpoint seri 56.2 61 0.0021 24.3 10.2 73 356-431 63-136 (152)
278 3esl_A Checkpoint serine/threo 55.9 74 0.0025 25.2 10.1 84 67-150 58-149 (202)
279 2uwj_G Type III export protein 55.1 48 0.0016 22.7 8.6 61 261-325 48-108 (115)
280 4g8k_A 2-5A-dependent ribonucl 54.7 43 0.0015 28.9 8.0 50 15-69 26-79 (337)
281 1n11_A Ankyrin; clathrin, BAND 54.6 28 0.00094 31.6 7.0 175 16-207 16-200 (437)
282 2p58_C Putative type III secre 53.8 51 0.0017 22.7 9.2 58 262-323 50-107 (116)
283 2nsz_A Programmed cell death p 53.6 40 0.0014 24.4 6.3 65 13-78 9-75 (129)
284 2fe3_A Peroxide operon regulat 52.1 57 0.002 24.1 7.2 67 199-268 6-72 (145)
285 4aez_C MAD3, mitotic spindle c 52.0 40 0.0014 27.2 6.4 75 341-421 100-175 (223)
286 4ets_A Ferric uptake regulatio 50.3 66 0.0022 24.4 7.3 66 200-268 18-85 (162)
287 2d2s_A Exocyst complex compone 49.6 1.1E+02 0.0036 25.1 8.9 90 52-144 24-119 (235)
288 4g8k_A 2-5A-dependent ribonucl 49.1 1.3E+02 0.0043 25.8 10.4 20 52-71 28-47 (337)
289 1k1a_A B-cell lymphoma 3-encod 47.9 1E+02 0.0036 24.5 9.2 27 88-114 13-39 (241)
290 2zu6_B Programmed cell death p 47.7 1.3E+02 0.0046 25.7 15.5 66 186-251 169-236 (307)
291 2ion_A PDCD4, programmed cell 47.6 32 0.0011 25.8 5.1 64 13-77 11-76 (152)
292 1n11_A Ankyrin; clathrin, BAND 47.3 34 0.0012 30.9 6.4 50 52-105 17-68 (437)
293 3lpz_A GET4 (YOR164C homolog); 46.8 1.4E+02 0.005 25.8 28.2 125 171-313 82-215 (336)
294 3eu9_A Huntingtin-interacting 45.1 57 0.0019 26.0 6.9 53 369-425 182-236 (240)
295 1k1a_A B-cell lymphoma 3-encod 44.4 87 0.003 25.0 8.0 14 407-420 191-204 (241)
296 2xig_A Ferric uptake regulatio 43.8 98 0.0033 23.0 7.8 49 220-268 29-77 (150)
297 3ljn_A Hypothetical protein; a 43.2 20 0.0007 31.5 4.1 18 126-143 91-108 (364)
298 1ug3_A EIF4GI, eukaryotic prot 43.1 1.3E+02 0.0045 26.2 9.1 64 186-249 14-78 (339)
299 1ug3_A EIF4GI, eukaryotic prot 41.9 87 0.003 27.3 7.7 24 253-276 142-165 (339)
300 4ets_A Ferric uptake regulatio 41.8 79 0.0027 24.0 6.6 72 342-414 14-87 (162)
301 2r9g_A AAA ATPase, central reg 40.6 1.3E+02 0.0046 23.7 9.2 17 25-41 28-44 (204)
302 4b4t_O 26S proteasome regulato 39.2 2.1E+02 0.0071 25.5 11.8 79 338-416 89-189 (393)
303 4a1g_A Mitotic checkpoint seri 39.0 1.2E+02 0.0041 22.7 10.0 54 63-116 82-136 (152)
304 2fe3_A Peroxide operon regulat 38.7 1.2E+02 0.004 22.4 7.8 38 94-131 34-71 (145)
305 3eyy_A Putative iron uptake re 38.1 99 0.0034 22.8 6.5 33 98-130 34-66 (145)
306 3mwm_A ZUR, putative metal upt 37.9 39 0.0013 24.8 4.2 44 17-60 19-62 (139)
307 2xig_A Ferric uptake regulatio 37.7 1.2E+02 0.0042 22.4 7.3 60 72-132 18-77 (150)
308 3bge_A Predicted ATPase; struc 37.6 1.5E+02 0.0051 23.3 7.9 29 17-45 10-41 (201)
309 3bqo_A Telomeric repeat-bindin 37.3 1.2E+02 0.004 23.9 6.6 109 318-429 18-150 (211)
310 3eu9_A Huntingtin-interacting 36.0 41 0.0014 27.0 4.6 19 259-277 181-199 (240)
311 3hra_A Ankyrin repeat family p 35.9 54 0.0018 25.4 5.2 19 190-208 9-27 (201)
312 3jxi_A Vanilloid receptor-rela 35.9 14 0.00048 30.5 1.7 56 18-73 9-73 (260)
313 2o03_A Probable zinc uptake re 35.7 78 0.0027 22.8 5.5 48 221-268 14-61 (131)
314 4fke_A Aminopeptidase N; zinc 35.1 3.7E+02 0.013 27.2 14.0 77 63-144 706-786 (909)
315 2o03_A Probable zinc uptake re 35.1 43 0.0015 24.3 4.0 43 18-60 17-59 (131)
316 3ygs_P Procaspase 9; apoptosis 34.7 1E+02 0.0036 20.8 5.6 34 96-133 52-85 (97)
317 3ctd_A Putative ATPase, AAA fa 34.6 1.7E+02 0.006 23.2 10.2 56 297-352 47-102 (213)
318 1rw2_A ATP-dependent DNA helic 34.4 1.1E+02 0.0037 23.0 6.0 54 339-392 72-125 (152)
319 3eyy_A Putative iron uptake re 34.1 1.4E+02 0.0048 22.0 6.9 58 354-413 12-69 (145)
320 2w57_A Ferric uptake regulatio 33.7 1.4E+02 0.005 22.1 6.9 59 354-413 10-69 (150)
321 2ijq_A Hypothetical protein; s 33.5 1.6E+02 0.0053 22.4 8.2 49 59-107 45-101 (161)
322 3txn_A 26S proteasome regulato 32.8 2.7E+02 0.0091 24.9 21.8 26 118-143 21-46 (394)
323 2wpv_A GET4, UPF0363 protein Y 32.7 2.4E+02 0.0081 24.2 26.5 127 170-313 79-216 (312)
324 1mzb_A Ferric uptake regulatio 32.6 57 0.002 23.8 4.4 62 36-98 8-70 (136)
325 3jxi_A Vanilloid receptor-rela 32.6 8.1 0.00028 32.1 -0.4 18 296-313 233-250 (260)
326 3bu8_A Telomeric repeat-bindin 32.5 1.9E+02 0.0066 23.1 11.5 53 377-429 88-147 (235)
327 3mwm_A ZUR, putative metal upt 32.4 73 0.0025 23.4 4.9 49 220-268 16-64 (139)
328 3kea_A K1L; tropism, ANK repea 31.9 2.2E+02 0.0075 23.6 8.8 17 191-207 36-52 (285)
329 1mzb_A Ferric uptake regulatio 31.9 1.5E+02 0.005 21.5 6.7 49 220-268 20-69 (136)
330 2keb_A DNA polymerase subunit 31.7 1.2E+02 0.0042 20.6 6.7 29 31-59 29-57 (101)
331 2cos_A Serine/threonine protei 31.4 36 0.0012 20.1 2.3 37 382-423 11-49 (54)
332 3aji_A 26S proteasome non-ATPa 31.3 64 0.0022 25.7 5.0 20 88-107 10-29 (231)
333 2fu4_A Ferric uptake regulatio 31.0 1.1E+02 0.0036 19.7 7.4 32 97-128 33-64 (83)
334 2qx5_A Nucleoporin NIC96; mRNA 30.7 1.6E+02 0.0055 28.5 8.1 43 188-230 157-199 (661)
335 3hra_A Ankyrin repeat family p 30.1 32 0.0011 26.8 2.8 15 91-105 12-26 (201)
336 3pvs_A Replication-associated 29.3 3.3E+02 0.011 24.8 12.7 34 128-161 267-300 (447)
337 2b7e_A PRE-mRNA processing pro 29.2 44 0.0015 20.3 2.5 29 98-126 3-31 (59)
338 2w57_A Ferric uptake regulatio 29.1 69 0.0023 23.9 4.3 63 35-98 6-69 (150)
339 3f3f_C Nucleoporin NUP85; stru 28.0 2.2E+02 0.0075 26.8 8.1 73 61-135 496-568 (570)
340 2r9g_A AAA ATPase, central reg 27.7 2.3E+02 0.0077 22.4 10.2 35 297-332 26-60 (204)
341 3l6a_A Eukaryotic translation 27.6 2.3E+02 0.0079 24.9 8.0 73 12-85 13-87 (364)
342 4fke_A Aminopeptidase N; zinc 27.5 5E+02 0.017 26.3 15.7 157 85-247 690-861 (909)
343 2f6m_A Suppressor protein STP2 27.0 1.2E+02 0.004 18.9 5.7 50 363-413 4-53 (65)
344 1q2z_A ATP-dependent DNA helic 26.9 1.4E+02 0.0046 21.3 5.3 33 339-371 41-73 (120)
345 3ygs_P Procaspase 9; apoptosis 26.8 1.2E+02 0.004 20.6 4.8 66 32-103 25-90 (97)
346 3bu8_A Telomeric repeat-bindin 26.4 2.5E+02 0.0086 22.5 11.9 20 90-109 123-142 (235)
347 4gq2_M Nucleoporin NUP120; bet 24.6 5.6E+02 0.019 26.1 11.3 28 118-145 899-926 (950)
348 3mv2_A Coatomer subunit alpha; 24.4 3.4E+02 0.012 23.4 11.2 51 340-391 185-237 (325)
349 4b4t_S RPN3, 26S proteasome re 24.2 4.4E+02 0.015 24.6 11.0 65 11-75 231-299 (523)
350 4gq2_M Nucleoporin NUP120; bet 24.1 3.7E+02 0.013 27.5 9.8 47 363-409 899-949 (950)
351 2p22_A Suppressor protein STP2 23.6 1.8E+02 0.0063 22.3 5.7 57 358-415 108-164 (174)
352 3t8k_A Uncharacterized protein 23.4 2.5E+02 0.0086 21.5 8.2 25 88-112 42-66 (186)
353 3bge_A Predicted ATPase; struc 23.3 2.7E+02 0.0094 21.9 9.2 56 297-352 19-74 (201)
354 2wvi_A Mitotic checkpoint seri 23.0 2.5E+02 0.0086 21.3 9.4 31 220-250 99-129 (164)
355 2dah_A Ubiquilin-3; UBA domain 22.8 1.2E+02 0.0043 17.8 3.7 11 409-419 35-45 (54)
356 3ctd_A Putative ATPase, AAA fa 22.2 3E+02 0.01 21.9 9.1 71 339-410 49-124 (213)
357 3l6a_A Eukaryotic translation 22.2 4E+02 0.014 23.4 9.0 64 185-248 14-79 (364)
358 2yru_A Steroid receptor RNA ac 21.9 2E+02 0.0069 20.4 5.3 40 104-143 49-88 (118)
359 2keb_A DNA polymerase subunit 21.8 2E+02 0.0067 19.6 6.9 31 100-130 28-58 (101)
360 3twr_A Tankyrase-2; ankyrin re 21.8 1.6E+02 0.0056 21.6 5.5 17 191-207 13-29 (165)
361 3rjo_A Endoplasmic reticulum a 21.6 4.4E+02 0.015 23.6 15.4 92 48-146 199-297 (419)
362 2ijq_A Hypothetical protein; s 21.5 2.7E+02 0.0091 21.1 8.3 61 83-144 35-103 (161)
363 3utm_A Tankyrase-1; tankyrase, 20.5 3.9E+02 0.013 22.5 9.2 249 50-309 25-301 (351)
364 2pnn_A Transient receptor pote 20.3 68 0.0023 26.5 3.2 190 85-277 14-255 (273)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-35 Score=291.55 Aligned_cols=414 Identities=12% Similarity=0.022 Sum_probs=332.5
Q ss_pred CCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 012365 9 PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88 (465)
Q Consensus 9 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 88 (465)
+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..++.+|...|++++|..+|+.+... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 5788999999999999999999999999985 4678899999999999999999999999988654 68899999999
Q ss_pred HHHhccCCHHHHHHHHHHHH-Hc--------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HH
Q 012365 89 SLNVKIKDFDSAYSLLDDLK-EM--------------NLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD-SQ 152 (465)
Q Consensus 89 ~~~~~~g~~~~a~~~~~~m~-~~--------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~ 152 (465)
.+|.+.|++++|.++|+++. .. +.+++..+|+.++.+|.+.|++++|.++|++|.+.+ |+ ..
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~ 235 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYE 235 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhH
Confidence 99999999999999999532 21 223458899999999999999999999999998753 32 22
Q ss_pred HHHHH--------------------------------------HHhhCChhHHHH---HHHHHHHcCCCCCHHHHHHHHH
Q 012365 153 TFSYL--------------------------------------IHNCSNEEDIIK---YYEQLKSAGGQITKYVFMALIN 191 (465)
Q Consensus 153 ~~~~l--------------------------------------l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~ 191 (465)
.+..+ +..+.+.|+..+ +++.+.+. +++..+++.++.
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 313 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHH
Confidence 22222 333445555443 34433333 467888888888
Q ss_pred HHHhcCCHHHHHHHHHHhc-CC---------------------------------CCChHHHHHHHHHHHHcCCChhHHH
Q 012365 192 AYTTCGEFEKARQVVLDAE-IP---------------------------------VKSRSEVKSALVSALASHGRTSDAI 237 (465)
Q Consensus 192 ~~~~~g~~~~a~~~~~~~~-~~---------------------------------~~~~~~~~~~l~~~~~~~g~~~~a~ 237 (465)
+|.+.|++++|.++|+++. .. .+....+|+.++..|.+.|++++|.
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHH
Confidence 8888888888888887632 11 1122335788888899999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCC-CccchhhHhhHhhhcCChhHHHHHHHHHHHccc
Q 012365 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY-WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFK 316 (465)
Q Consensus 238 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 316 (465)
++|+++.+... .+..++..++.+|.+.|++++|.++|+++.+.+. .+..+..++..|.+.|++++|.++|+++.+..+
T Consensus 394 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 472 (597)
T 2xpi_A 394 RYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472 (597)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99998887652 3577888999999999999999999998876543 455677888889999999999999999988665
Q ss_pred chhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhc----CCCCc--HHHHHHHHHHhHhhhhhhHHHHHHHHHHHc
Q 012365 317 DDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDEL----GLPPS--RKCLDFLLGACVNARDLKRAHLIWKEYENA 390 (465)
Q Consensus 317 ~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~----~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 390 (465)
.+...++.+...+... |++++|+++|+++. .. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.
T Consensus 473 ~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~-~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNK------SDMQTAINHFQNAL-LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp CCHHHHHHHHHHHHHT------TCHHHHHHHHHHHH-HHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHh------CCHHHHHHHHHHHH-HhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 6666666666555443 99999999999998 54 67888 789999999999999999999999999987
Q ss_pred CCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCChhHHHHHHHhh
Q 012365 391 GLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQACKQT 439 (465)
Q Consensus 391 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l~~~~~~ 439 (465)
+ |.+..+|..++.+|.+.|++++|.++++++.+.+|.........+..
T Consensus 546 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 546 S-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593 (597)
T ss_dssp S-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 4 77899999999999999999999999999999888765554444443
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-31 Score=263.12 Aligned_cols=388 Identities=11% Similarity=-0.008 Sum_probs=251.8
Q ss_pred cccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 012365 23 DLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYS 102 (465)
Q Consensus 23 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 102 (465)
+.|.+..+...+..+ ..++...|+.++..+.+.|++++|..+|+++.+. .|+..++..++.+|.+.|++++|..
T Consensus 65 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 65 TDGSFLKERNAQNTD----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccCccCCCCCccccc----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHH
Confidence 344455555555443 2357889999999999999999999999999864 5788999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HC--------------CCCCCHHHHHHHHHhhCC---h
Q 012365 103 LLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME-QA--------------NVKPDSQTFSYLIHNCSN---E 164 (465)
Q Consensus 103 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~--------------~~~p~~~~~~~ll~~~~~---~ 164 (465)
+|+++... +++..+++.++.+|.+.|++++|.++|+++. .. +..++..+++.+..++.+ .
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99998654 6899999999999999999999999999532 11 223457888888888654 4
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHH--------------------------------------HHHHHHHhcCCHHHHHHHH
Q 012365 165 EDIIKYYEQLKSAGGQITKYVFM--------------------------------------ALINAYTTCGEFEKARQVV 206 (465)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~l~~~~~~~g~~~~a~~~~ 206 (465)
+++.+.++.+.+.+.. +...+. .++..|.+.|++++|.++|
T Consensus 217 ~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 217 DRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 5566788888776532 333322 2355677889999999999
Q ss_pred HHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCC---------------------------------CCHH
Q 012365 207 LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN---------------------------------LEPR 253 (465)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~---------------------------------p~~~ 253 (465)
+++...+ +...+|+.++..|.+.|++++|.++|+++.+.+.. .+..
T Consensus 296 ~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 374 (597)
T 2xpi_A 296 SSINGLE-KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAV 374 (597)
T ss_dssp HTSTTGG-GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHhhcCC-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHH
Confidence 9744332 44456999999999999999999999999876521 1344
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHcCCCC-CccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHh
Q 012365 254 AVIALIEHLNSEGELNRLIQLLEEVHDPDY-WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQ 332 (465)
Q Consensus 254 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 332 (465)
++..+...|.+.|++++|.++|+++.+... .+..+..++..+.+.|++++|+++|+++.+..+.+...++.+...+...
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 454 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQL 454 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 445555555555555555555555543221 2334455555555555566666555555554333444444443333332
Q ss_pred hhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHc----CCCCC--hhHHHHHHHHH
Q 012365 333 IATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENA----GLPYN--VLSYLWMYKAF 406 (465)
Q Consensus 333 ~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~l~~~~ 406 (465)
|++++|+++|+++. ... ..+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|
T Consensus 455 ------g~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 455 ------GNILLANEYLQSSY-ALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp ------TCHHHHHHHHHHHH-HHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHH-HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 56666666666655 221 224555666666666666666666666666544 44454 45666666666
Q ss_pred HhcCChhhHHHHHhccCCCCCC
Q 012365 407 LASGNRKSASKLLSKMPKDDPH 428 (465)
Q Consensus 407 ~~~g~~~~A~~~~~~m~~~~~~ 428 (465)
.+.|++++|.++++++.+.+|.
T Consensus 527 ~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 527 RKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHSSC
T ss_pred HHhcCHHHHHHHHHHHHHhCCC
Confidence 6666666666666666555443
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.2e-31 Score=252.63 Aligned_cols=192 Identities=20% Similarity=0.277 Sum_probs=174.9
Q ss_pred cCCCCCH-HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHhh
Q 012365 5 LEITPSS-ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYE---------FNLVRRIYPMICH 74 (465)
Q Consensus 5 ~~~~p~~-~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~ 74 (465)
.++.+++ ..++.+|++|++.|++++|+++|++|.+.|++||..||+.||.+|++.+. +++|.++|++|.+
T Consensus 19 k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~ 98 (501)
T 4g26_A 19 KAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV 98 (501)
T ss_dssp -----CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH
T ss_pred hcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH
Confidence 4555544 46899999999999999999999999999999999999999999987654 7889999999999
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 012365 75 HNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTF 154 (465)
Q Consensus 75 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 154 (465)
.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 99 ~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty 178 (501)
T 4g26_A 99 DKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPEL 178 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCChh---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 012365 155 SYLIHNCSNEE---DIIKYYEQLKSAGGQITKYVFMALINAYTTC 196 (465)
Q Consensus 155 ~~ll~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (465)
+++|.+|++.| ++.++++.|.+.|..|+..||+.++..+...
T Consensus 179 ~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 179 AALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999987655 4667899999999999999999999988764
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=5.5e-30 Score=241.34 Aligned_cols=206 Identities=12% Similarity=0.177 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCC---------H
Q 012365 28 HVALDVVEQMVQGELVPSTE-TINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKD---------F 97 (465)
Q Consensus 28 ~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~ 97 (465)
..+..+.+.+.+.+..+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 34556667777777665543 5788899999999999999999999999999999999999999887654 6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHc
Q 012365 98 DSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA 177 (465)
Q Consensus 98 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 177 (465)
+.|.++|++|...|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~------------------------- 141 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR------------------------- 141 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH-------------------------
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc-------------------------
Confidence 7889999999999999999999999999999999999999999988877655544
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHH
Q 012365 178 GGQITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI 256 (465)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 256 (465)
+|+++|.+|++.|++++|.++|++| .....|+..||++||.+|++.|++++|.+++++|.+.|..|+..||+
T Consensus 142 -------tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~ 214 (501)
T 4g26_A 142 -------SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFD 214 (501)
T ss_dssp -------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHH
T ss_pred -------eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 5556666677777777777777774 33455566678888888888888999999999999999999999999
Q ss_pred HHHHHHHcc
Q 012365 257 ALIEHLNSE 265 (465)
Q Consensus 257 ~ll~~~~~~ 265 (465)
.++..|+..
T Consensus 215 ~l~~~F~s~ 223 (501)
T 4g26_A 215 MIEEWFKSE 223 (501)
T ss_dssp HHHHHHHSH
T ss_pred HHHHHHhcC
Confidence 988888764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=4.3e-27 Score=217.90 Aligned_cols=376 Identities=13% Similarity=0.030 Sum_probs=253.6
Q ss_pred HHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCC
Q 012365 17 LITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKD 96 (465)
Q Consensus 17 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 96 (465)
+...+.+.|++++|++.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3456778999999999999998764 3356677777788889999999999999988865 6788999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHH
Q 012365 97 FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKS 176 (465)
Q Consensus 97 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~ 176 (465)
+++|...|+++.... |.+..+|..+..++.+.|++++|.+.|+++.+. .|+.
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~------------------------- 134 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDL------------------------- 134 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTC-------------------------
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc-------------------------
Confidence 999999999998764 456678999999999999999999999998764 3432
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHH
Q 012365 177 AGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVI 256 (465)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 256 (465)
...+..+...+...|++++|.+.|+++....+....+|..+...+...|++++|...|+++.+.+. .+...+.
T Consensus 135 ------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~ 207 (388)
T 1w3b_A 135 ------YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYI 207 (388)
T ss_dssp ------THHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred ------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHH
Confidence 223333444455555555555555542221222222355555555555556666655555555441 1244455
Q ss_pred HHHHHHHccCcHHHHHHHHHHHcCCCC-CccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhc
Q 012365 257 ALIEHLNSEGELNRLIQLLEEVHDPDY-WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIAT 335 (465)
Q Consensus 257 ~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 335 (465)
.+...+...|++++|...+++.....+ .+..+..+...+...|++++|++.|+++....+.+...+..+...+...
T Consensus 208 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--- 284 (388)
T 1w3b_A 208 NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK--- 284 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---
Confidence 555555555555555555555543322 1233444555555666666666666665553333333333333333222
Q ss_pred CCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhH
Q 012365 336 TDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSA 415 (465)
Q Consensus 336 ~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 415 (465)
|++++|+..|+++. .. .+++..++..+...+...|++++|...++++.+. .|.+..++..+..+|.+.|++++|
T Consensus 285 ---g~~~~A~~~~~~al-~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 285 ---GSVAEAEDCYNTAL-RL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp ---SCHHHHHHHHHHHH-HH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHH
T ss_pred ---CCHHHHHHHHHHHH-hh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHH
Confidence 67777777777766 32 2346677888888888888888888888888875 366677888888888888888888
Q ss_pred HHHHhccCCCCCChhHHHHHHHh
Q 012365 416 SKLLSKMPKDDPHVRFVIQACKQ 438 (465)
Q Consensus 416 ~~~~~~m~~~~~~~~~~l~~~~~ 438 (465)
.+.++++.+.+|.....+...+.
T Consensus 359 ~~~~~~a~~~~p~~~~a~~~lg~ 381 (388)
T 1w3b_A 359 LMHYKEAIRISPTFADAYSNMGN 381 (388)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCHHHHHhHHH
Confidence 88888888887766555544444
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1.9e-24 Score=200.15 Aligned_cols=357 Identities=11% Similarity=0.007 Sum_probs=291.1
Q ss_pred CCC-HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 012365 8 TPS-SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRS 86 (465)
Q Consensus 8 ~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 86 (465)
.|+ ...+..+...+.+.|++++|...++...+.. +.+..+|..+..++...|++++|.+.|+++.+.. +.+..+|..
T Consensus 29 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 106 (388)
T 1w3b_A 29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYIN 106 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHH
Confidence 454 5566677778888999999999999988754 4588899999999999999999999999998865 456788999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhH
Q 012365 87 MISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEED 166 (465)
Q Consensus 87 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 166 (465)
+..++.+.|++++|...|+++.+.+ +.+...+..+...+...|++++|.+.|+++.+. .|
T Consensus 107 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p----------------- 166 (388)
T 1w3b_A 107 LAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QP----------------- 166 (388)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CT-----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CC-----------------
Confidence 9999999999999999999998875 445667888889999999999999999998753 12
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHc
Q 012365 167 IIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA 246 (465)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 246 (465)
.+..++..+...+...|++++|...|++.....+.....|..+...+...|++++|...+.+....
T Consensus 167 --------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 232 (388)
T 1w3b_A 167 --------------NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp --------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred --------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 245677778888899999999999998743223333345888899999999999999999998886
Q ss_pred CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCC-CccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHH
Q 012365 247 GCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY-WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYH 325 (465)
Q Consensus 247 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 325 (465)
.. .+..++..+..++.+.|++++|...++++.+..+ .++.+..+...+.+.|++++|...|+++.+..+.+...+..+
T Consensus 233 ~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 311 (388)
T 1w3b_A 233 SP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311 (388)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred Cc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHH
Confidence 52 2477888899999999999999999999876554 355777888888899999999999999988655555555544
Q ss_pred HHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCC-cHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 012365 326 FSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPP-SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYK 404 (465)
Q Consensus 326 l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 404 (465)
...+.. .|++++|...++++. ...| +..++..+..++.+.|++++|...|+++.+. .|.+...|..+..
T Consensus 312 ~~~~~~------~g~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~a~~~lg~ 381 (388)
T 1w3b_A 312 ANIKRE------QGNIEEAVRLYRKAL---EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-SPTFADAYSNMGN 381 (388)
T ss_dssp HHHHHT------TTCHHHHHHHHHHHT---TSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT-CTTCHHHHHHHHH
T ss_pred HHHHHH------cCCHHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHhHHH
Confidence 433322 499999999999998 3445 5778999999999999999999999999986 3667778888888
Q ss_pred HHHhcCC
Q 012365 405 AFLASGN 411 (465)
Q Consensus 405 ~~~~~g~ 411 (465)
.+...|+
T Consensus 382 ~~~~~~~ 388 (388)
T 1w3b_A 382 TLKEMQD 388 (388)
T ss_dssp HHHHTCC
T ss_pred HHHHccC
Confidence 8777664
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.2e-23 Score=200.39 Aligned_cols=414 Identities=9% Similarity=-0.029 Sum_probs=312.5
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 012365 11 SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL 90 (465)
Q Consensus 11 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 90 (465)
...|......+.+.|++++|+..|+++.+.. |+..++..+..++...|++++|.+.++.+.+.+ +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4567778888999999999999999999865 689999999999999999999999999999876 5678899999999
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------------------CCC--
Q 012365 91 NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQAN-------------------VKP-- 149 (465)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-------------------~~p-- 149 (465)
+.+.|++++|...|+++...+ +++......++..+........+.+.+..+...+ ..|
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999998876 4555555555555554433333333332211110 111
Q ss_pred ----------------------C-HHHHHHHHH-hh-----CChhHHHHHHHHHHH-----cCC--------CCCHHHHH
Q 012365 150 ----------------------D-SQTFSYLIH-NC-----SNEEDIIKYYEQLKS-----AGG--------QITKYVFM 187 (465)
Q Consensus 150 ----------------------~-~~~~~~ll~-~~-----~~~~~~~~~~~~~~~-----~~~--------~~~~~~~~ 187 (465)
+ ...+..... .+ ++...+...++.+.+ ..- +.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 1 111111111 11 223445556666665 211 22356777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 012365 188 ALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEG 266 (465)
Q Consensus 188 ~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 266 (465)
.+...+...|++++|...|++. ...+. ..++..+...+...|++++|...++++..... .+...+..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhC
Confidence 8889999999999999999883 33333 55689999999999999999999999988653 35678888999999999
Q ss_pred cHHHHHHHHHHHcCCCC-CccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhH
Q 012365 267 ELNRLIQLLEEVHDPDY-WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGL 345 (465)
Q Consensus 267 ~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~ 345 (465)
++++|...++...+... .+..+..+...+...|++++|...++++....+.+...+..+...++. .|++++|.
T Consensus 319 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~------~~~~~~A~ 392 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTD------KNDFDKAL 392 (514)
T ss_dssp CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH------TTCHHHHH
T ss_pred CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHH------CCCHHHHH
Confidence 99999999999876543 355667788888899999999999999988544444444444443333 39999999
Q ss_pred HhHHHHHhhcCCCCc----HHHHHHHHHHhHh---hhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHH
Q 012365 346 DLLQFIKDELGLPPS----RKCLDFLLGACVN---ARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKL 418 (465)
Q Consensus 346 ~~~~~m~~~~~~~p~----~~~~~~ll~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 418 (465)
..++++.....-.|+ ...+..+...+.. .|++++|...++++.+.. +.+..++..+...|.+.|++++|...
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 471 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITL 471 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999998832222232 3478889999999 999999999999999873 66788999999999999999999999
Q ss_pred HhccCCCCCChhHHHHHHHh
Q 012365 419 LSKMPKDDPHVRFVIQACKQ 438 (465)
Q Consensus 419 ~~~m~~~~~~~~~~l~~~~~ 438 (465)
++++.+.+|.....+.....
T Consensus 472 ~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 472 FEESADLARTMEEKLQAITF 491 (514)
T ss_dssp HHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHhccccHHHHHHHHH
Confidence 99999999987666655443
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=4.8e-22 Score=187.71 Aligned_cols=359 Identities=10% Similarity=-0.022 Sum_probs=221.8
Q ss_pred CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 012365 10 SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89 (465)
Q Consensus 10 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 89 (465)
+...|..+...+.+.|++++|+.+|+.+.+.. +.+..++..+..++...|++++|...++.+.+.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 45677788888888888888888888887653 3367788888888888888888888888888765 456778888888
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHH------------HHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 012365 90 LNVKIKDFDSAYSLLDDLKEMNLMPTA---SMYNAIMA------------GYFRKKDVQGALMVLKEMEQANVKPDSQTF 154 (465)
Q Consensus 90 ~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~li~------------~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 154 (465)
+|.+.|++++|...|+++...+ +.+. ..+..+.. .+...|++++|...|+++.+..
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------- 173 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-------- 173 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------
Confidence 8888888888888888887654 2333 55555533 3677777777777777776531
Q ss_pred HHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChh
Q 012365 155 SYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTS 234 (465)
Q Consensus 155 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 234 (465)
+.+..++..+..+|.+.|++++|.+.|++.....+....+|..+...|...|+++
T Consensus 174 -------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 228 (450)
T 2y4t_A 174 -------------------------VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHE 228 (450)
T ss_dssp -------------------------TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHH
T ss_pred -------------------------CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 2244555666666666666666666666532212222234666666666667777
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHH------------HHHHHccCcHHHHHHHHHHHcCCCCC-----ccchhhHhhHhh
Q 012365 235 DAIIVYEEIKEAGCNLE-PRAVIAL------------IEHLNSEGELNRLIQLLEEVHDPDYW-----MDGCCRLILHCV 296 (465)
Q Consensus 235 ~a~~~~~~m~~~~~~p~-~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~~~~~ 296 (465)
+|+..|+++.... |+ ...+..+ ...+.+.|++++|...++.+.+..+. ...+..+...+.
T Consensus 229 ~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~ 306 (450)
T 2y4t_A 229 LSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFS 306 (450)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 7777766666543 33 2223222 55666667777777777666543322 113445555666
Q ss_pred hcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCc-HHHHHHHHHH-----
Q 012365 297 RFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS-RKCLDFLLGA----- 370 (465)
Q Consensus 297 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~----- 370 (465)
+.|++++|+..++++....+.+...+..+...+.. .|++++|...++++. ...|+ ...+..+..+
T Consensus 307 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~------~~~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~~ 377 (450)
T 2y4t_A 307 KDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLI------EEMYDEAIQDYETAQ---EHNENDQQIREGLEKAQRLLK 377 (450)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------TTCHHHHHHHHHHHH---TTSSSCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH------hcCHHHHHHHHHHHH---HhCcchHHHHHHHHHHHHHhh
Confidence 67777777777776665433333444433333322 277777777777776 34553 3344444322
Q ss_pred -------hHhhh-----hhhHHHHHHHHHHHcCCCCC----h-------hHHHHHHHHHHhcCChhhHH
Q 012365 371 -------CVNAR-----DLKRAHLIWKEYENAGLPYN----V-------LSYLWMYKAFLASGNRKSAS 416 (465)
Q Consensus 371 -------~~~~g-----~~~~A~~~~~~m~~~g~~p~----~-------~~~~~l~~~~~~~g~~~~A~ 416 (465)
|...| +.+++.+.++++... ..|| . ..+..+..+|...|+.+++.
T Consensus 378 ~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~-~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 378 QSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ-WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp HHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH-SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred cccchhHHHHhCCCccCCHHHHHHHHHHHHHH-hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 22333 456667777763321 1222 1 25666777777777766544
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=5.8e-21 Score=184.58 Aligned_cols=408 Identities=10% Similarity=-0.004 Sum_probs=300.4
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 012365 11 SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL 90 (465)
Q Consensus 11 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 90 (465)
...|..+...+.+.|++++|++.|+++.+... .+...+..+..++...|++++|.+.++.+.+.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 46678888899999999999999999988653 478899999999999999999999999999876 5678999999999
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHh----
Q 012365 91 NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA------NVKPDSQTFSYLIHN---- 160 (465)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p~~~~~~~ll~~---- 160 (465)
+...|++++|...|+.+.. .|+ ..+..+..+...+...+|...++++... ...|+.......+..
T Consensus 103 ~~~~g~~~~A~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSL---NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHHhc---CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 9999999999999974432 233 2233344556666678888888887542 233444433322211
Q ss_pred --------------------------hC-----------ChhHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHhc
Q 012365 161 --------------------------CS-----------NEEDIIKYYEQLKSAGGQIT-------KYVFMALINAYTTC 196 (465)
Q Consensus 161 --------------------------~~-----------~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~ 196 (465)
+. +..++..+++.+.+.... + ..++..+...+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhc
Confidence 11 223344455555554322 2 23566677888999
Q ss_pred CCHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 012365 197 GEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLL 275 (465)
Q Consensus 197 g~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 275 (465)
|++++|.+.|++. ...+. ...|..+...+...|++++|...+.++.+... .+..++..+...+...|++++|...+
T Consensus 257 ~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999883 33333 44588899999999999999999999998763 35788899999999999999999999
Q ss_pred HHHcCCCC-CccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhh
Q 012365 276 EEVHDPDY-WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDE 354 (465)
Q Consensus 276 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~ 354 (465)
+++.+..+ .+..+..+...+...|++++|...|+++....+.+...+..+...+.. .|++++|...|+++...
T Consensus 334 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~------~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 334 QKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTD------RGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH------TTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH------hCCHHHHHHHHHHHHHc
Confidence 99876543 355677888888999999999999999988654444444444333333 49999999999998722
Q ss_pred cCCCC----cHHHHHHHHHHhHhh----------hhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHh
Q 012365 355 LGLPP----SRKCLDFLLGACVNA----------RDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420 (465)
Q Consensus 355 ~~~~p----~~~~~~~ll~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 420 (465)
..-.+ ....+......+... |++++|...|+++.+. .|.+..++..+...|.+.|++++|.+.++
T Consensus 408 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL-DPRSEQAKIGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp HHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 11111 122244455667777 9999999999999987 37778899999999999999999999999
Q ss_pred ccCCCCCChhHHHHHH
Q 012365 421 KMPKDDPHVRFVIQAC 436 (465)
Q Consensus 421 ~m~~~~~~~~~~l~~~ 436 (465)
+..+.+|.....+...
T Consensus 487 ~al~~~~~~~~~~~~~ 502 (537)
T 3fp2_A 487 DSAILARTMDEKLQAT 502 (537)
T ss_dssp HHHHHC--CHHHHHHH
T ss_pred HHHHhCCCcHHHHHHH
Confidence 9999888765554443
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=1.5e-21 Score=184.34 Aligned_cols=341 Identities=10% Similarity=0.006 Sum_probs=218.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 012365 29 VALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLK 108 (465)
Q Consensus 29 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 108 (465)
.+...+....... +.+...+..+...+.+.|++++|..+|+.+.+.. +.+..++..+..++...|++++|...|+++.
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444444432 3356677777777888888888888888877654 4567778888888888888888888888877
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCCH---HH
Q 012365 109 EMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITK---YV 185 (465)
Q Consensus 109 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 185 (465)
+.+ +.+...|..+...|.+.|++++|.+.|+++.+. .|+ +. ..
T Consensus 88 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~-------------------------------~~~~~~~ 133 (450)
T 2y4t_A 88 QLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPS-------------------------------ENEEKEA 133 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCC-------------------------------HHHHHHH
T ss_pred hcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC-------------------------------ChhhHHH
Confidence 765 456777778888888888888888888777653 121 22 45
Q ss_pred HHHHHHH------------HHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHH
Q 012365 186 FMALINA------------YTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPR 253 (465)
Q Consensus 186 ~~~l~~~------------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 253 (465)
+..+... +...|++++|...|+++....+....++..+...|...|++++|.+.|+++.+... .+..
T Consensus 134 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~ 212 (450)
T 2y4t_A 134 QSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTE 212 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH
Confidence 5555333 66667777777776653222222233466666677777777777777776665531 2456
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhh
Q 012365 254 AVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQI 333 (465)
Q Consensus 254 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 333 (465)
++..+...+...|++++|...++++.+..+.. ..+...+..+.. ..........++.
T Consensus 213 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----------------~~~~~~~~~~~~-----~~~~~~~~~~~~~-- 269 (450)
T 2y4t_A 213 AFYKISTLYYQLGDHELSLSEVRECLKLDQDH----------------KRCFAHYKQVKK-----LNKLIESAEELIR-- 269 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------HHHHHHHHHHHH-----HHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh----------------HHHHHHHHHHHH-----HHHHHHHHHHHHH--
Confidence 66666666666666666666666654322111 001111100000 0000011222222
Q ss_pred hcCCCCchhhhHHhHHHHHhhcCCCCc-----HHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 012365 334 ATTDPPDVQIGLDLLQFIKDELGLPPS-----RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLA 408 (465)
Q Consensus 334 ~~~~~~~~~~A~~~~~~m~~~~~~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 408 (465)
.|++++|+..|+++. . ..|+ ...|..+..++.+.|++++|...++++.+. .|.+..+|..+..+|..
T Consensus 270 ----~g~~~~A~~~~~~~l-~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~ 341 (450)
T 2y4t_A 270 ----DGRYTDATSKYESVM-K--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPDNVNALKDRAEAYLI 341 (450)
T ss_dssp ----HTCHHHHHHHHHHHH-H--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred ----cCCHHHHHHHHHHHH-h--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHH
Confidence 399999999999998 3 3454 457888899999999999999999999987 36688999999999999
Q ss_pred cCChhhHHHHHhccCCCCCChhHHHHHHH
Q 012365 409 SGNRKSASKLLSKMPKDDPHVRFVIQACK 437 (465)
Q Consensus 409 ~g~~~~A~~~~~~m~~~~~~~~~~l~~~~ 437 (465)
.|++++|...++++.+.+|.........+
T Consensus 342 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 342 EEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp TTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 99999999999999998887544443333
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.7e-21 Score=185.78 Aligned_cols=379 Identities=8% Similarity=-0.031 Sum_probs=284.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012365 46 TETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125 (465)
Q Consensus 46 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 125 (465)
...+......+...|++++|...|+++.+.. |+..+|..+..++.+.|++++|...|+++.+.+ +.+..+|..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3466677788999999999999999999875 799999999999999999999999999998876 5677899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHH---HH-------------------------------
Q 012365 126 YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK---YY------------------------------- 171 (465)
Q Consensus 126 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~---~~------------------------------- 171 (465)
+.+.|++++|...|+++...+ +++.......+..+........ .+
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999998865 2333333333332221111111 11
Q ss_pred ----HHHHHcCCC--------C-CHHHHHHHHHHHHh---cCCHHHHHHHHHHhcC--------CC------CChHHHHH
Q 012365 172 ----EQLKSAGGQ--------I-TKYVFMALINAYTT---CGEFEKARQVVLDAEI--------PV------KSRSEVKS 221 (465)
Q Consensus 172 ----~~~~~~~~~--------~-~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~--------~~------~~~~~~~~ 221 (465)
..+...... | +...+......+.. .|++++|...|++... .+ +....++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 011110000 1 13444444444444 8999999999987322 22 12233578
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCC-CccchhhHhhHhhhcCC
Q 012365 222 ALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY-WMDGCCRLILHCVRFKQ 300 (465)
Q Consensus 222 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 300 (465)
.+...+...|++++|...++++.+.. |+...+..+...+...|++++|...++.+.+... .+..+..+...+...|+
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC
Confidence 88999999999999999999999887 4478888999999999999999999999887654 35567778888899999
Q ss_pred hhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHH
Q 012365 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRA 380 (465)
Q Consensus 301 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A 380 (465)
+++|...|++.....+.+...+..+...+ ...|++++|+..++++. ... +.+...+..+...+...|++++|
T Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPENIFPYIQLACLA------YRENKFDDCETLFSEAK-RKF-PEAPEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp TTHHHHHHHHHHHTCSSCSHHHHHHHHHT------TTTTCHHHHHHHHHHHH-HHS-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHHHH------HHcCCHHHHHHHHHHHH-HHc-ccCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999885444444443333322 23599999999999998 321 22456788899999999999999
Q ss_pred HHHHHHHHHcCCCCC------hhHHHHHHHHHHh---cCChhhHHHHHhccCCCCCChhHHHHHHHhh
Q 012365 381 HLIWKEYENAGLPYN------VLSYLWMYKAFLA---SGNRKSASKLLSKMPKDDPHVRFVIQACKQT 439 (465)
Q Consensus 381 ~~~~~~m~~~g~~p~------~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~l~~~~~~ 439 (465)
...++++.+.. +.+ ..++..+...|.. .|++++|...++++.+.+|.........+..
T Consensus 392 ~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 458 (514)
T 2gw1_A 392 LKQYDLAIELE-NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQM 458 (514)
T ss_dssp HHHHHHHHHHH-HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhh-hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 99999998752 222 3389999999999 9999999999999998777654444333333
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=6.7e-19 Score=160.69 Aligned_cols=335 Identities=9% Similarity=0.001 Sum_probs=168.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 012365 49 INSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128 (465)
Q Consensus 49 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 128 (465)
+..+...+...|++++|...|+.+.+.. +.+..++..+...+...|++++|...|++..+.. +.+...|..+...+..
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHH
Confidence 3334444444444444444444444432 2234444444444444444444444444444332 2234444444444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 012365 129 KKDVQGALMVLKEMEQANVKP---DSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQV 205 (465)
Q Consensus 129 ~g~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 205 (465)
.|++++|...|++..+. .| +.......+... .. ...+..+...+...|++++|.+.
T Consensus 84 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~---~~----------------~~~~~~~a~~~~~~~~~~~A~~~ 142 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKA---DE----------------MQRLRSQALDAFDGADYTAAITF 142 (359)
T ss_dssp HTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH---HH----------------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHH---HH----------------HHHHHHHHHHHHHccCHHHHHHH
Confidence 55555555555444432 23 111111111000 00 01122334455566666666666
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCc
Q 012365 206 VLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWM 285 (465)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 285 (465)
+++.....+.....+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...++...+..+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~- 220 (359)
T 3ieg_A 143 LDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD- 220 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-
Confidence 655222122222335566666666666666666666666543 124555566666666666666666666665432211
Q ss_pred cchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCc-H---
Q 012365 286 DGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS-R--- 361 (465)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~-~--- 361 (465)
...+...+..+.. ..........++. .|++++|...++++. .. .|+ .
T Consensus 221 ---------------~~~~~~~~~~~~~-----~~~~~~~a~~~~~------~~~~~~A~~~~~~~~-~~--~~~~~~~~ 271 (359)
T 3ieg_A 221 ---------------HKRCFAHYKQVKK-----LNKLIESAEELIR------DGRYTDATSKYESVM-KT--EPSVAEYT 271 (359)
T ss_dssp ---------------CHHHHHHHHHHHH-----HHHHHHHHHHHHH------TTCHHHHHHHHHHHH-HH--CCSSHHHH
T ss_pred ---------------chHHHHHHHHHHH-----HHHHHHHHHHHHH------cCCHHHHHHHHHHHH-hc--CCCchHHH
Confidence 1111111111110 0000000001111 266666666666665 22 222 2
Q ss_pred -HHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCChhHHHHHHHh
Q 012365 362 -KCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQACKQ 438 (465)
Q Consensus 362 -~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l~~~~~ 438 (465)
..+..+..++...|++++|...+++..+. .|.+..++..+...|.+.|++++|.+.++++.+.+|...........
T Consensus 272 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 348 (359)
T 3ieg_A 272 VRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEK 348 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 23445667788888888888888888876 36677888888888888899999999988888888865544444333
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.85 E-value=2.8e-18 Score=165.73 Aligned_cols=378 Identities=10% Similarity=0.026 Sum_probs=271.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012365 46 TETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125 (465)
Q Consensus 46 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 125 (465)
...+..+...+.+.|++++|.+.|+.+.+.. +.++.++..+..+|.+.|++++|...|++..+.+ +.+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567778888999999999999999999876 5689999999999999999999999999998876 5678899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHhhCChhHHHHHHHHHHHc------CCCCCHH-------------
Q 012365 126 YFRKKDVQGALMVLKEMEQANVKPDSQT--FSYLIHNCSNEEDIIKYYEQLKSA------GGQITKY------------- 184 (465)
Q Consensus 126 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~~~~~~~~~------~~~~~~~------------- 184 (465)
+...|++++|...|+.+.. .|+... ...++. ......+...++.+... ...|+..
T Consensus 103 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSL---NGDFDGASIEPMLE-RNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC--------------CHHH-HHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHHcCCHHHHHHHHHHHhc---CCCCChHHHHHHHH-HHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 9999999999999974422 232211 111111 11112233333333221 1112211
Q ss_pred -----------------HHHHHHHHHHh--------cCCHHHHHHHHHHh-cCCCCChH------HHHHHHHHHHHcCCC
Q 012365 185 -----------------VFMALINAYTT--------CGEFEKARQVVLDA-EIPVKSRS------EVKSALVSALASHGR 232 (465)
Q Consensus 185 -----------------~~~~l~~~~~~--------~g~~~~a~~~~~~~-~~~~~~~~------~~~~~l~~~~~~~g~ 232 (465)
....+...+.. .|++++|..++++. ...+.... .++..+...+...|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 22222222222 24789999999884 33333322 136667788889999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCC-CccchhhHhhHhhhcCChhHHHHHHHHH
Q 012365 233 TSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY-WMDGCCRLILHCVRFKQLSSATDLLKQL 311 (465)
Q Consensus 233 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 311 (465)
+++|...+.+..... |+...+..+...+...|++++|...++.+.+..+ .+..+..+...+...|++++|...|++.
T Consensus 259 ~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 259 LLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999876 6688888999999999999999999999876543 3556778888889999999999999999
Q ss_pred HHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcC
Q 012365 312 KDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAG 391 (465)
Q Consensus 312 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 391 (465)
....+.+...+..+...++. .|++++|+..++++. ... +.+...+..+...+...|++++|...++++.+..
T Consensus 337 ~~~~~~~~~~~~~la~~~~~------~g~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 337 QSLNPENVYPYIQLACLLYK------QGKFTESEAFFNETK-LKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHCTTCSHHHHHHHHHHHH------TTCHHHHHHHHHHHH-HHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHH------cCCHHHHHHHHHHHH-HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 88554444455444444333 399999999999998 332 2345678888999999999999999999998652
Q ss_pred -----CCCChhHHHHHHHHHHhc----------CChhhHHHHHhccCCCCCChhHHHHHHHhh
Q 012365 392 -----LPYNVLSYLWMYKAFLAS----------GNRKSASKLLSKMPKDDPHVRFVIQACKQT 439 (465)
Q Consensus 392 -----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~l~~~~~~ 439 (465)
.......+..+...|.+. |++++|...++++.+.+|.........+..
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 471 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQL 471 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 111222345556778888 999999999999998888655444444443
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=3.9e-17 Score=147.12 Aligned_cols=291 Identities=13% Similarity=0.037 Sum_probs=179.1
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012365 79 PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158 (465)
Q Consensus 79 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 158 (465)
.+...+..+...+...|++++|..+|+++.... +.+...+..++..+...|++++|..+++++.+.. |
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~--------- 87 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--P--------- 87 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--T---------
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--c---------
Confidence 344445555555666666666666666665543 3344455555566666666666666666655421 1
Q ss_pred HhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHH
Q 012365 159 HNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCG-EFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAI 237 (465)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 237 (465)
.+...+..+...+...| ++++|.+.|++.....+.....|..+...+...|++++|.
T Consensus 88 ----------------------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 145 (330)
T 3hym_B 88 ----------------------SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAM 145 (330)
T ss_dssp ----------------------TSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHH
T ss_pred ----------------------CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHH
Confidence 12334455555566666 6666666666532222222234666666667777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCC-ccchhhHhhHhhhcCChhHHHHHHHHHHHccc
Q 012365 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW-MDGCCRLILHCVRFKQLSSATDLLKQLKDKFK 316 (465)
Q Consensus 238 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 316 (465)
..+++..+.... +...+..+...+...|++++|...+++..+..+. +..+..+...+...|++++|...+++......
T Consensus 146 ~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 224 (330)
T 3hym_B 146 AAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224 (330)
T ss_dssp HHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhh
Confidence 777766665421 2344555666666666666666666666554322 23344455555566666666666665544100
Q ss_pred chhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCCh
Q 012365 317 DDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNV 396 (465)
Q Consensus 317 ~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 396 (465)
. .++ .........++..+..++...|++++|...+++..+.. +.+.
T Consensus 225 ~--------------------~~~-------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~ 270 (330)
T 3hym_B 225 A--------------------IGN-------------EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNA 270 (330)
T ss_dssp T--------------------TSC-------------SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCS
T ss_pred h--------------------ccc-------------cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccch
Confidence 0 000 01123345678888899999999999999999999873 6678
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHhccCCCCCChhHHHHHHHh
Q 012365 397 LSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQACKQ 438 (465)
Q Consensus 397 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l~~~~~ 438 (465)
.++..+...|.+.|++++|.+.++++.+.+|.........+.
T Consensus 271 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 312 (330)
T 3hym_B 271 STYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH 312 (330)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHH
Confidence 899999999999999999999999999988876544444444
No 15
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.81 E-value=5.3e-20 Score=178.59 Aligned_cols=159 Identities=11% Similarity=0.117 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 012365 46 TETINSILHACEESYEFNLVRRIYPMICH---HNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122 (465)
Q Consensus 46 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 122 (465)
..||+++|.+|++.|++++|.++|+.|.+ .|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||..|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 35899999999999999999999988764 578999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHH--cCCCCC------HHHHHHHHHHH
Q 012365 123 MAGYFRKKDV-QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKS--AGGQIT------KYVFMALINAY 193 (465)
Q Consensus 123 i~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~~l~~~~ 193 (465)
|.++++.|+. ++|.++|++|.+.|+.||..||+.++.++.+. .+++.+.+ .++.|+ ..+...|.+.|
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 9999999985 78999999999999999999999888654433 34444443 344443 45566677777
Q ss_pred HhcC---------CHHHHHHHHHH
Q 012365 194 TTCG---------EFEKARQVVLD 208 (465)
Q Consensus 194 ~~~g---------~~~~a~~~~~~ 208 (465)
.+.+ ..++-.+.|++
T Consensus 283 s~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 283 AKDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp CCCSCCCCCCCSSCHHHHHHHHHH
T ss_pred ccCCCCcCccccCCHHHHHHHHHH
Confidence 7665 24666666654
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=3.8e-17 Score=147.22 Aligned_cols=287 Identities=10% Similarity=0.053 Sum_probs=159.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012365 45 STETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124 (465)
Q Consensus 45 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 124 (465)
+...+..+...+...|++++|.++++.+.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...|..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 34455555556666666666666666665543 3344455555566666666666666666665543 344556666666
Q ss_pred HHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 012365 125 GYFRKK-DVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203 (465)
Q Consensus 125 ~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 203 (465)
.+...| ++++|.+.|++..+.. |+ +...+..+...+...|++++|.
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~--~~-------------------------------~~~~~~~l~~~~~~~~~~~~A~ 145 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE--KT-------------------------------YGPAWIAYGHSFAVESEHDQAM 145 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC--TT-------------------------------CTHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC--Cc-------------------------------cHHHHHHHHHHHHHccCHHHHH
Confidence 666666 6666666666655421 11 2333445555566666666666
Q ss_pred HHHHHh-cCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCC
Q 012365 204 QVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPD 282 (465)
Q Consensus 204 ~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 282 (465)
+.|++. ...+... ..+..+...|...|++++|...+++..+... .+...+..+...+...|++++|...+++..+..
T Consensus 146 ~~~~~a~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 146 AAYFTAAQLMKGCH-LPMLYIGLEYGLTNNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp HHHHHHHHHTTTCS-HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 666552 2222222 2245566666666666666666666665542 235556666666666666666666666554321
Q ss_pred ----------CCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHH
Q 012365 283 ----------YWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIK 352 (465)
Q Consensus 283 ----------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~ 352 (465)
..+..+..+...+...|++++|...|++..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-------------------------------------- 265 (330)
T 3hym_B 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL-------------------------------------- 265 (330)
T ss_dssp TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------------------
T ss_pred hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--------------------------------------
Confidence 11223333444444444444444444444331
Q ss_pred hhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHH-hcCC
Q 012365 353 DELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFL-ASGN 411 (465)
Q Consensus 353 ~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~-~~g~ 411 (465)
. +.+...+..+...+...|++++|...+++..+.. |.+...+..+..++. ..|+
T Consensus 266 ---~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 266 ---I-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp ---S-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC
T ss_pred ---C-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCc
Confidence 1 1234456666677777777777777777777652 556666776766663 3444
No 17
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.80 E-value=1.1e-19 Score=176.48 Aligned_cols=148 Identities=9% Similarity=0.062 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 012365 11 SASYKKLITYSCDLLKVHVALDVVEQMVQ---GELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSM 87 (465)
Q Consensus 11 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 87 (465)
..|||+||++||+.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 46899999999999999999999988864 589999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHh
Q 012365 88 ISLNVKIKDF-DSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD------SQTFSYLIHN 160 (465)
Q Consensus 88 i~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~ll~~ 160 (465)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.+..+. .+++.++++ ..+..|+ ..|...+.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 9999999985 78999999999999999999999998765544 344444444 3445544 3444445454
Q ss_pred hCC
Q 012365 161 CSN 163 (465)
Q Consensus 161 ~~~ 163 (465)
+.+
T Consensus 282 ~s~ 284 (1134)
T 3spa_A 282 YAK 284 (1134)
T ss_dssp HCC
T ss_pred Hcc
Confidence 543
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=8.6e-15 Score=139.42 Aligned_cols=368 Identities=9% Similarity=0.041 Sum_probs=272.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhc----cCCHHH
Q 012365 28 HVALDVVEQMVQGELVPSTETINSILHACEE----SYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVK----IKDFDS 99 (465)
Q Consensus 28 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~ 99 (465)
..+++.+....+.| +...+..+...+.. .+++++|...|+...+.| ++..+..|...|.. .+++++
T Consensus 24 ~~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 24 NVNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp -CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred hHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 34466666666654 66777777777777 788999999999888765 56777788888887 888999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhh-------CChhHHH
Q 012365 100 AYSLLDDLKEMNLMPTASMYNAIMAGYFR----KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC-------SNEEDII 168 (465)
Q Consensus 100 a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-------~~~~~~~ 168 (465)
|...|++..+.| +...+..|...|.. .+++++|.+.|++..+.|. ...+..+-..+ .+...+.
T Consensus 98 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 98 AVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGR---DSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999888754 66777778888887 7889999999998887652 33333333222 2345566
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc----CCChhHHHHHH
Q 012365 169 KYYEQLKSAGGQITKYVFMALINAYTT----CGEFEKARQVVLDAEIPVKSRSEVKSALVSALAS----HGRTSDAIIVY 240 (465)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~ 240 (465)
+.++...+.| +...+..+...|.. .++.++|.+.|++...... ...+..+...|.. .+++++|..+|
T Consensus 172 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 172 EWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGD--ELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 6677666654 67788888888887 8999999999987332222 2246777777775 78999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHc----cCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhc-----CChhHHHHHHHHH
Q 012365 241 EEIKEAGCNLEPRAVIALIEHLNS----EGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRF-----KQLSSATDLLKQL 311 (465)
Q Consensus 241 ~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~a~~~~~~~ 311 (465)
++..+.| ++..+..+-..+.. .++.++|...++...+.+ .++....+...|... +++++|+..|++.
T Consensus 247 ~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 247 SQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG-NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp HHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 9988875 45666667777776 899999999999988765 344555666666665 8999999999998
Q ss_pred HHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHh----hhhhhHHHHHHHHH
Q 012365 312 KDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVN----ARDLKRAHLIWKEY 387 (465)
Q Consensus 312 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~m 387 (465)
.+.+.++ .+. .+..++... ....+.++|++.|++.. +. .++..+..+...|.. .+++++|...|++.
T Consensus 323 ~~~~~~~--a~~-~lg~~y~~~--g~~~~~~~A~~~~~~a~-~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 323 AEQGDAT--AQA-NLGAIYFRL--GSEEEHKKAVEWFRKAA-AK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp HHTTCHH--HHH-HHHHHHHHS--CCHHHHHHHHHHHHHHH-HT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HhcCCHH--HHH-HHHHHHHhC--CCcccHHHHHHHHHHHH-HC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 8853332 222 222222221 11248899999999998 44 356777788888877 78999999999999
Q ss_pred HHcCCCCChhHHHHHHHHHHh----cCChhhHHHHHhccCCCCCC
Q 012365 388 ENAGLPYNVLSYLWMYKAFLA----SGNRKSASKLLSKMPKDDPH 428 (465)
Q Consensus 388 ~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~ 428 (465)
.+.| ++..+..|...|.. .+++++|..+|++..+.++.
T Consensus 394 ~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 394 AEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 9875 57788889999988 89999999999999987743
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=3.1e-15 Score=143.96 Aligned_cols=405 Identities=8% Similarity=0.011 Sum_probs=273.9
Q ss_pred CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 012365 10 SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89 (465)
Q Consensus 10 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 89 (465)
|...|..++. +.+.|++++|..+|+++.+.- +-+...|..++..+.+.|++++|..+|+++.+.. |+...|...+.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 6789999998 478899999999999999863 4478889999999999999999999999999874 68888887775
Q ss_pred HH-hccCCHHHHHH----HHHHHHH-cCCC-CCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHH
Q 012365 90 LN-VKIKDFDSAYS----LLDDLKE-MNLM-PTASMYNAIMAGYFR---------KKDVQGALMVLKEMEQANVKPDSQT 153 (465)
Q Consensus 90 ~~-~~~g~~~~a~~----~~~~m~~-~~~~-~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~~~~p~~~~ 153 (465)
.. ...|+.+.|.+ +|+.... .|.. ++...|...+..... .|+++.|..+|++..+....+....
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 33 34577776655 7776654 3443 356788888876654 7899999999999987321111233
Q ss_pred HHHHHH---hhC----------Ch---hHHHHHHHHHH------HcC---CCCC--------HHHHHHHHHHHHhc----
Q 012365 154 FSYLIH---NCS----------NE---EDIIKYYEQLK------SAG---GQIT--------KYVFMALINAYTTC---- 196 (465)
Q Consensus 154 ~~~ll~---~~~----------~~---~~~~~~~~~~~------~~~---~~~~--------~~~~~~l~~~~~~~---- 196 (465)
|..... ..+ .. ..+..+++.+. +.. ++|+ ...|...+......
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 332211 111 11 11222232211 111 2343 23455544333222
Q ss_pred CCH----HHHHHHHHHh-cCCCCChHHHHHHHHHHHHc-------CCChh-------HHHHHHHHHHHcCCCCCHHHHHH
Q 012365 197 GEF----EKARQVVLDA-EIPVKSRSEVKSALVSALAS-------HGRTS-------DAIIVYEEIKEAGCNLEPRAVIA 257 (465)
Q Consensus 197 g~~----~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~m~~~~~~p~~~~~~~ 257 (465)
++. ..+..+|++. ...+.. ...|..+...+.+ .|+++ +|..+|++..+.-.+-+...+..
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~p~~-~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~ 326 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVLGHH-PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence 222 3666777762 223333 3357777777765 78887 88999998876322234777888
Q ss_pred HHHHHHccCcHHHHHHHHHHHcCCCCC-c-cchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhc
Q 012365 258 LIEHLNSEGELNRLIQLLEEVHDPDYW-M-DGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIAT 335 (465)
Q Consensus 258 ll~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 335 (465)
+...+.+.|++++|..+++.+.+.++. + ..+...+..+.+.|++++|..+|++..+..+.....+.......+..
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~--- 403 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC--- 403 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH---
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH---
Confidence 888889999999999999998875543 2 24555666667889999999999998874222212111111000111
Q ss_pred CCCCchhhhHHhHHHHHhhcCCCC-cHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcC-CCCC--hhHHHHHHHHHHhcCC
Q 012365 336 TDPPDVQIGLDLLQFIKDELGLPP-SRKCLDFLLGACVNARDLKRAHLIWKEYENAG-LPYN--VLSYLWMYKAFLASGN 411 (465)
Q Consensus 336 ~~~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~l~~~~~~~g~ 411 (465)
.|+.++|..+|+... + ..| ++..|..++..+.+.|+.++|+.+|++....+ .+|+ ...|...+....+.|+
T Consensus 404 --~~~~~~A~~~~e~al-~--~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~ 478 (530)
T 2ooe_A 404 --SKDKSVAFKIFELGL-K--KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 478 (530)
T ss_dssp --TCCHHHHHHHHHHHH-H--HHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC
T ss_pred --cCChhHHHHHHHHHH-H--HCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 489999999999888 3 234 56788888888889999999999999998863 2232 3378888888888899
Q ss_pred hhhHHHHHhccCCCCC
Q 012365 412 RKSASKLLSKMPKDDP 427 (465)
Q Consensus 412 ~~~A~~~~~~m~~~~~ 427 (465)
.+.+.++.+++.+.-|
T Consensus 479 ~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 479 LASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHCc
Confidence 9999999988876554
No 20
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=2.5e-15 Score=142.59 Aligned_cols=366 Identities=8% Similarity=-0.047 Sum_probs=188.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--------CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-----C-
Q 012365 46 TETINSILHACEESYEFNLVRRIYPMICHH--------NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEM-----N- 111 (465)
Q Consensus 46 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~- 111 (465)
...|+.+...+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++.... +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345555555555566666666555554321 11223455555666666666666666555554321 0
Q ss_pred -CCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHh------hCChhHHHHHHHHHHHcCCCC
Q 012365 112 -LMPTASMYNAIMAGYFRK--KDVQGALMVLKEMEQANVKPDS-QTFSYLIHN------CSNEEDIIKYYEQLKSAGGQI 181 (465)
Q Consensus 112 -~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~------~~~~~~~~~~~~~~~~~~~~~ 181 (465)
-.....++..+..++... +++++|.+.|++..+. .|+. ..+..+... ..+...+.+.++...+.. +.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 011233444443333332 3455666666655542 2322 111111111 122233333444433332 22
Q ss_pred CHHHHHHHHHHHH----hcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCC-HHHHH
Q 012365 182 TKYVFMALINAYT----TCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLE-PRAVI 256 (465)
Q Consensus 182 ~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~ 256 (465)
+..++..+...+. ..|++++|.+.+++.....+....++..+...|...|++++|...+.+..+.. |+ ..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChHHHHH
Confidence 3444444433333 23456677777765222222222346677777777777777777777777654 33 44444
Q ss_pred HHHHHHHc-------------------cCcHHHHHHHHHHHcCCC-CCccchhhHhhHhhhcCChhHHHHHHHHHHHccc
Q 012365 257 ALIEHLNS-------------------EGELNRLIQLLEEVHDPD-YWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFK 316 (465)
Q Consensus 257 ~ll~~~~~-------------------~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 316 (465)
.+..+|.. .+..+.|...++...+.. .....+..+...+...|++++|+..|++......
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 44333322 233567777777765543 3456777888889999999999999999887543
Q ss_pred chhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCCh
Q 012365 317 DDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNV 396 (465)
Q Consensus 317 ~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 396 (465)
++........ .+........|+.++|+..|++.. .+.|+.... .+....+.++++...+. -|.++
T Consensus 366 ~~~~~~~~~~--~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~~~---------~~~~~~l~~~~~~~l~~-~p~~~ 430 (472)
T 4g1t_A 366 TPVAKQLLHL--RYGNFQLYQMKCEDKAIHHFIEGV---KINQKSREK---------EKMKDKLQKIAKMRLSK-NGADS 430 (472)
T ss_dssp CHHHHHHHHH--HHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCHHH---------HHHHHHHHHHHHHHHHH-CC-CT
T ss_pred CChHHHHHHH--HHHHHHHHHCCCHHHHHHHHHHHH---hcCcccHHH---------HHHHHHHHHHHHHHHHh-CCCCH
Confidence 3332211111 111111123589999999999988 466664332 23344556667777665 37888
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHhccCCCCCChhH
Q 012365 397 LSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRF 431 (465)
Q Consensus 397 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 431 (465)
.+|..+..+|...|++++|.+.|++.++.++..+.
T Consensus 431 ~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 431 EALHVLAFLQELNEKMQQADEDSERGLESGSLIPS 465 (472)
T ss_dssp THHHHHHHHHHHHHHCC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence 99999999999999999999999999988775543
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=5.8e-17 Score=148.50 Aligned_cols=292 Identities=11% Similarity=0.008 Sum_probs=166.5
Q ss_pred HHHhcCCHHHHHH-HHHHHhhCCC-CC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 012365 55 ACEESYEFNLVRR-IYPMICHHNL-KP--NSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130 (465)
Q Consensus 55 ~~~~~~~~~~a~~-~~~~~~~~~~-~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 130 (465)
++...|++++|.+ .++...+... .| +...+..+...+.+.|++++|...|+++.+.. +.+..+|..+...+...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3444566666666 6655443221 01 23445566666777777777777777766654 445666667777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh-
Q 012365 131 DVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA- 209 (465)
Q Consensus 131 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~- 209 (465)
++++|.+.|+++.+.. +.+..++..+...+...|++++|.+.+++.
T Consensus 113 ~~~~A~~~~~~al~~~---------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 113 QELLAISALRRCLELK---------------------------------PDNQTALMALAVSFTNESLQRQACEILRDWL 159 (368)
T ss_dssp CHHHHHHHHHHHHHHC---------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC---------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777776665421 124556666777777777777777777662
Q ss_pred cCCCCChHHHHHH---------------HHHHHHcCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHH
Q 012365 210 EIPVKSRSEVKSA---------------LVSALASHGRTSDAIIVYEEIKEAGCNL-EPRAVIALIEHLNSEGELNRLIQ 273 (465)
Q Consensus 210 ~~~~~~~~~~~~~---------------l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 273 (465)
...+..... +.. .+..+...|++++|...++++.+..... +..++..+...+.
T Consensus 160 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~---------- 228 (368)
T 1fch_A 160 RYTPAYAHL-VTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN---------- 228 (368)
T ss_dssp HTSTTTGGG-CC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH----------
T ss_pred HhCcCcHHH-HHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH----------
Confidence 222222221 211 1222224455555555555554443110 2344444444444
Q ss_pred HHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHh
Q 012365 274 LLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKD 353 (465)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~ 353 (465)
..|++++|...|+++....+.+...+..+...+.. .|++++|+..|+++.
T Consensus 229 -----------------------~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~------~g~~~~A~~~~~~al- 278 (368)
T 1fch_A 229 -----------------------LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN------GNQSEEAVAAYRRAL- 278 (368)
T ss_dssp -----------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------TTCHHHHHHHHHHHH-
T ss_pred -----------------------HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH------cCCHHHHHHHHHHHH-
Confidence 45555555555555444322223333333222222 377777777777776
Q ss_pred hcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCC-----------hhHHHHHHHHHHhcCChhhHHHHHhcc
Q 012365 354 ELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYN-----------VLSYLWMYKAFLASGNRKSASKLLSKM 422 (465)
Q Consensus 354 ~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~m 422 (465)
... +.+...+..+..++...|++++|...|+++.+.. |.+ ..+|..+..+|...|++++|..++++.
T Consensus 279 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 279 ELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 321 2356788889999999999999999999998752 222 679999999999999999999998854
Q ss_pred C
Q 012365 423 P 423 (465)
Q Consensus 423 ~ 423 (465)
+
T Consensus 357 l 357 (368)
T 1fch_A 357 L 357 (368)
T ss_dssp H
T ss_pred H
Confidence 3
No 22
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.76 E-value=2.8e-15 Score=136.51 Aligned_cols=298 Identities=11% Similarity=0.026 Sum_probs=225.4
Q ss_pred CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 012365 10 SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89 (465)
Q Consensus 10 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 89 (465)
|+..+..+...+...|++++|+..|+.+.+... .+..++..+..++...|++++|...++.+.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 466788899999999999999999999988643 378899999999999999999999999999875 457889999999
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCC---CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 012365 90 LNVKIKDFDSAYSLLDDLKEMNLM---PTASMYNAI------------MAGYFRKKDVQGALMVLKEMEQANVKPDSQTF 154 (465)
Q Consensus 90 ~~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 154 (465)
++...|++++|...|++..+.. + .+...+..+ ...+...|++++|.+.|+++.+.. +.+...+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 157 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR 157 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 9999999999999999998764 2 244555555 578899999999999999998642 2344455
Q ss_pred HHHHHhh---CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh-cCCCCChHHHHH---------
Q 012365 155 SYLIHNC---SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKS--------- 221 (465)
Q Consensus 155 ~~ll~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~--------- 221 (465)
..+...+ ++..++...++...+.. +.+..++..+...+...|++++|.+.|++. ...+.... .+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ 235 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR-CFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchH-HHHHHHHHHHHH
Confidence 5444443 34455556666666554 346778888888888888998888888773 33333322 222
Q ss_pred ---HHHHHHHcCCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCcHHHHHHHHHHHcCCCC-CccchhhHhh
Q 012365 222 ---ALVSALASHGRTSDAIIVYEEIKEAGCNLEP----RAVIALIEHLNSEGELNRLIQLLEEVHDPDY-WMDGCCRLIL 293 (465)
Q Consensus 222 ---~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~ 293 (465)
.+...+...|++++|...+++..+.... ++ ..+..+..++.+.|++++|...+++..+..+ .+..+..+..
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 314 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 2256688888888998888888876522 22 2244566788888888888888888876433 3556677777
Q ss_pred HhhhcCChhHHHHHHHHHHHc
Q 012365 294 HCVRFKQLSSATDLLKQLKDK 314 (465)
Q Consensus 294 ~~~~~~~~~~a~~~~~~~~~~ 314 (465)
.+...|++++|...|++..+.
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhc
Confidence 788888888888888888874
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=1.9e-16 Score=145.02 Aligned_cols=252 Identities=12% Similarity=0.016 Sum_probs=145.3
Q ss_pred HhcccCHHHHHH-HHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCC
Q 012365 21 SCDLLKVHVALD-VVEQMVQGEL---VPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKD 96 (465)
Q Consensus 21 ~~~~g~~~~A~~-~~~~m~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 96 (465)
+...|++++|++ .|++..+... ..+...+..+...+...|++++|...++.+.+.. +.+..++..+..++.+.|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 334577888888 7776544321 1134567788889999999999999999999876 5678899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHH---------------HH-
Q 012365 97 FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQ-TFSYL---------------IH- 159 (465)
Q Consensus 97 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l---------------l~- 159 (465)
+++|...|++..+.+ +.+..++..+...+...|++++|.+.|+++.+.. |+.. .+... +.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 999999999998875 5688999999999999999999999999998753 3221 11100 00
Q ss_pred --hhCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHcCCChhH
Q 012365 160 --NCSNEEDIIKYYEQLKSAGGQI-TKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSD 235 (465)
Q Consensus 160 --~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~ 235 (465)
..++...+...++.+.+..... +..++..+...+...|++++|...|++. ...+.. ..+|..+...+...|++++
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND-YLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHcCCHHH
Confidence 1112222333333333322111 3444444444455555555555554441 111111 1234444444455555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHH
Q 012365 236 AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278 (465)
Q Consensus 236 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 278 (465)
|...|+++.+... .+...+..+..++.+.|++++|...+++.
T Consensus 270 A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 311 (368)
T 1fch_A 270 AVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEA 311 (368)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5555554444321 12344444444444445555444444444
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=3.5e-18 Score=153.80 Aligned_cols=221 Identities=8% Similarity=0.006 Sum_probs=57.7
Q ss_pred cccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 012365 23 DLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYS 102 (465)
Q Consensus 23 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 102 (465)
+.|++++|.++++++. ++.+|..+..++.+.|++++|.+.|.+ .+|..+|..++..+...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 4566777777777662 224677777777777777777777743 2456677777777777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCC
Q 012365 103 LLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQIT 182 (465)
Q Consensus 103 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 182 (465)
+++...+. .+++.+.+.++.+|.+.|+++++.++++ .| +
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~p--------------------------------n 121 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GP--------------------------------N 121 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC---------------------------------
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CC--------------------------------c
Confidence 66555543 3455666777777777777777665553 13 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012365 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262 (465)
Q Consensus 183 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 262 (465)
..+|..+.+.|...|++++|...|..+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|
T Consensus 122 ~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aC 187 (449)
T 1b89_A 122 NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFAC 187 (449)
T ss_dssp ---------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHH
Confidence 335555555555555555555555532 12555555555555555555555555 1455555555555
Q ss_pred HccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHH
Q 012365 263 NSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKD 313 (465)
Q Consensus 263 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 313 (465)
...|+++.|......+. ..++....++..|.+.|.+++|+.+++....
T Consensus 188 v~~~ef~lA~~~~l~L~---~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 188 VDGKEFRLAQMCGLHIV---VHADELEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp HHTTCHHHHHHTTTTTT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHcCcHHHHHHHHHHHH---hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 55555555533333211 2233333444555555555655555555544
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=8.6e-17 Score=147.24 Aligned_cols=257 Identities=13% Similarity=0.034 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012365 47 ETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126 (465)
Q Consensus 47 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 126 (465)
..+..+...+.+.|++++|.++|+.+.+.. +.+..++..+..++...|++++|...|++..+.. +.+..+|..+...|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555555666666666666666665543 3455566666666666666666666666655543 33455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHH-----------HHHHHHhhCChhH---HHHHHHHHHHcCCC-CCHHHHHHHHH
Q 012365 127 FRKKDVQGALMVLKEMEQANVKPDSQT-----------FSYLIHNCSNEED---IIKYYEQLKSAGGQ-ITKYVFMALIN 191 (465)
Q Consensus 127 ~~~g~~~~a~~~~~~m~~~~~~p~~~~-----------~~~ll~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~l~~ 191 (465)
...|++++|.+.|+++.+.. |+... +..+...+.+.++ +...++.+.+.... ++..++..+..
T Consensus 144 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 66666666666666655421 21111 1111122222222 22233333333211 25666777777
Q ss_pred HHHhcCCHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHH
Q 012365 192 AYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNR 270 (465)
Q Consensus 192 ~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 270 (465)
.+...|++++|.+.|++. ...+. ...+|..+...|...|++++|...|++..+... .+..++..+..+|.+.|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHH
Confidence 777778888887777763 22333 233577777777778888888888877777641 236667777777777777777
Q ss_pred HHHHHHHHcCCCCC-------------ccchhhHhhHhhhcCChhHHHHHHH
Q 012365 271 LIQLLEEVHDPDYW-------------MDGCCRLILHCVRFKQLSSATDLLK 309 (465)
Q Consensus 271 a~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~a~~~~~ 309 (465)
|...+++..+.... ...+..+...+...|+.+.+..+..
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77777766542211 2233444445555555555554443
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=7.6e-17 Score=147.63 Aligned_cols=268 Identities=12% Similarity=0.028 Sum_probs=176.5
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012365 80 NSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159 (465)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 159 (465)
+...+..+...+.+.|++++|..+|+++.+.. +.+..+|..+...+...|++++|.+.|+++.+.. |
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p---------- 130 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--P---------- 130 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T----------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--C----------
Confidence 34457778888888899999999999888765 5678888888889999999999998888876531 2
Q ss_pred hhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh-cCCCCCh---------HHHHHHHHHHHHc
Q 012365 160 NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSR---------SEVKSALVSALAS 229 (465)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~---------~~~~~~l~~~~~~ 229 (465)
.+..++..+..+|...|++++|.+.|++. ...+... ...+..+...+..
T Consensus 131 ---------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (365)
T 4eqf_A 131 ---------------------NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVD 189 (365)
T ss_dssp ---------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------C
T ss_pred ---------------------CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhh
Confidence 24556777777888888888888888762 1111111 1112334667777
Q ss_pred CCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHH
Q 012365 230 HGRTSDAIIVYEEIKEAGCN-LEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLL 308 (465)
Q Consensus 230 ~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 308 (465)
.|++++|...++++.+.... +++.++..+...+...|++++|...+++..+..
T Consensus 190 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------- 243 (365)
T 4eqf_A 190 SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-------------------------- 243 (365)
T ss_dssp CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------------------
T ss_pred hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------------------------
Confidence 77778888877777776521 146666666666666666666666666554322
Q ss_pred HHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCC-cHHHHHHHHHHhHhhhhhhHHHHHHHHH
Q 012365 309 KQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPP-SRKCLDFLLGACVNARDLKRAHLIWKEY 387 (465)
Q Consensus 309 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m 387 (465)
+.+...+..+...+.. .|++++|+..|+++. . ..| +..++..+..+|...|++++|...|+++
T Consensus 244 -------p~~~~~~~~l~~~~~~------~g~~~~A~~~~~~al-~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 307 (365)
T 4eqf_A 244 -------PEDYSLWNRLGATLAN------GDRSEEAVEAYTRAL-E--IQPGFIRSRYNLGISCINLGAYREAVSNFLTA 307 (365)
T ss_dssp -------TTCHHHHHHHHHHHHH------TTCHHHHHHHHHHHH-H--HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred -------CCCHHHHHHHHHHHHH------cCCHHHHHHHHHHHH-h--cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2222222222222222 266666666666665 2 234 4678888999999999999999999999
Q ss_pred HHcC--C-C--------CChhHHHHHHHHHHhcCChhhHHHHHhccC
Q 012365 388 ENAG--L-P--------YNVLSYLWMYKAFLASGNRKSASKLLSKMP 423 (465)
Q Consensus 388 ~~~g--~-~--------p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 423 (465)
.+.. . . .+..+|..+..++...|+.+.|.+..++-+
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 308 LSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred HHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 8652 0 1 136789999999999999999999887743
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=5e-16 Score=139.88 Aligned_cols=363 Identities=11% Similarity=0.061 Sum_probs=164.7
Q ss_pred CCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 012365 9 PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88 (465)
Q Consensus 9 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 88 (465)
+++.+|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++...+. .+++.+.+.++
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li 101 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELI 101 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHH
Confidence 55679999999999999999999999653 57789999999999999999999988877664 46688899999
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHH
Q 012365 89 SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII 168 (465)
Q Consensus 89 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 168 (465)
.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+ ..|..+..++.+.|+..
T Consensus 102 ~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq 165 (449)
T 1b89_A 102 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQ 165 (449)
T ss_dssp -------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHH
T ss_pred HHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHH
Confidence 99999999999998884 478889999999999999999999999986 37889999988888887
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCC
Q 012365 169 KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC 248 (465)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 248 (465)
+..+...+.+ ++.+|..++.+|...|+++.|...... ....+.. ...++..|.+.|++++|+.+++......
T Consensus 166 ~AVea~~KA~---~~~~Wk~v~~aCv~~~ef~lA~~~~l~--L~~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le- 237 (449)
T 1b89_A 166 AAVDGARKAN---STRTWKEVCFACVDGKEFRLAQMCGLH--IVVHADE--LEELINYYQDRGYFEELITMLEAALGLE- 237 (449)
T ss_dssp HHHHHHHHHT---CHHHHHHHHHHHHHTTCHHHHHHTTTT--TTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTST-
T ss_pred HHHHHHHHcC---CchhHHHHHHHHHHcCcHHHHHHHHHH--HHhCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCc-
Confidence 7777777664 789999999999999999999666543 2222222 3468899999999999999999987654
Q ss_pred CCCHHHHHHHHHHHHcc--CcHHHHHHHHHHHcCCC------CCccchhhHhhHhhhcCChhHHHHHHHHHHHc------
Q 012365 249 NLEPRAVIALIEHLNSE--GELNRLIQLLEEVHDPD------YWMDGCCRLILHCVRFKQLSSATDLLKQLKDK------ 314 (465)
Q Consensus 249 ~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------ 314 (465)
+-....|+-+-.++++- +++.+.++.|..-..-+ .....|..++..|...++++.|....-+-...
T Consensus 238 ~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~ 317 (449)
T 1b89_A 238 RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQ 317 (449)
T ss_dssp TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHH
Confidence 34456666666666554 44445555444222111 11345666777778888888887643222110
Q ss_pred ------ccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHH
Q 012365 315 ------FKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYE 388 (465)
Q Consensus 315 ------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 388 (465)
...+...++..+.-++.. ...++.-+.... ...+.| +.++..+.+.|.+..+..++..+.
T Consensus 318 f~~~~~kv~n~elyYkai~fyl~~--------~p~~l~~ll~~l-~~~ld~-----~r~v~~~~~~~~l~l~~~yl~~v~ 383 (449)
T 1b89_A 318 FKDIITKVANVELYYRAIQFYLEF--------KPLLLNDLLMVL-SPRLDH-----TRAVNYFSKVKQLPLVKPYLRSVQ 383 (449)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHHH--------CGGGHHHHHHHH-GGGCCH-----HHHHHHHHHTTCTTTTHHHHHHHH
T ss_pred HHHHHhchhHHHHHHHHHHHHHhc--------CHHHHHHHHHHH-HhccCc-----HHHHHHHHHcCCcHHHHHHHHHHH
Confidence 112222233333222211 111122111111 111111 233444456666666666666555
Q ss_pred HcCCCCChhHHHHHHHHHHhcCChhhHHHHHh
Q 012365 389 NAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420 (465)
Q Consensus 389 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 420 (465)
+. .+..+-.++-..|....|++.-+.-++
T Consensus 384 ~~---n~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 384 NH---NNKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp TT---CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred Hh---hHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 43 344455555566777777766555554
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=1.5e-13 Score=132.12 Aligned_cols=378 Identities=9% Similarity=0.030 Sum_probs=255.8
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 012365 34 VEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLM 113 (465)
Q Consensus 34 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 113 (465)
|++..+.. +-|...|..++.. ...|++++|..+|+.+.+.. +.+...|..++..+.+.|++++|..+|++.... .
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 34444443 3378899988884 77899999999999999874 667889999999999999999999999999876 4
Q ss_pred CCHHHHHHHHHHH-HhcCCHHHHHH----HHHHHHH-CCCCCC-HHHHHHHHHhh------------CChhHHHHHHHHH
Q 012365 114 PTASMYNAIMAGY-FRKKDVQGALM----VLKEMEQ-ANVKPD-SQTFSYLIHNC------------SNEEDIIKYYEQL 174 (465)
Q Consensus 114 ~~~~~~~~li~~~-~~~g~~~~a~~----~~~~m~~-~~~~p~-~~~~~~ll~~~------------~~~~~~~~~~~~~ 174 (465)
|+...|...+... ...|+.++|.+ +|+.... .|..|+ ...|...+... ++...+..+++..
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 7888888877533 35677776655 7776654 355543 44554444332 2334456677777
Q ss_pred HHcCCCCCHHHHHHHHHHH-------------HhcCCHHHHHHHHHH-------hcC-----CCCC------hHHHHHHH
Q 012365 175 KSAGGQITKYVFMALINAY-------------TTCGEFEKARQVVLD-------AEI-----PVKS------RSEVKSAL 223 (465)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~~-------------~~~g~~~~a~~~~~~-------~~~-----~~~~------~~~~~~~l 223 (465)
.+.........|....... .+.+++..|..+++. ... ++.. ....|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 6631111123443332211 134567777776654 111 1111 01245555
Q ss_pred HHHHHcC----CCh----hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-------cCcHH-------HHHHHHHHHcC-
Q 012365 224 VSALASH----GRT----SDAIIVYEEIKEAGCNLEPRAVIALIEHLNS-------EGELN-------RLIQLLEEVHD- 280 (465)
Q Consensus 224 ~~~~~~~----g~~----~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-------~g~~~-------~a~~~~~~~~~- 280 (465)
+...... ++. ..+..+|++..... +-++..|..+...+.+ .|+++ +|..+++...+
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 5433322 232 36778899888764 2356777777777764 78887 89999999986
Q ss_pred CCC-CccchhhHhhHhhhcCChhHHHHHHHHHHHcccch-hHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCC
Q 012365 281 PDY-WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDD-EMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLP 358 (465)
Q Consensus 281 ~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~ 358 (465)
..+ .+..+...+..+.+.|++++|..+|+++....+.+ ...|......... .|++++|..+|++.. + ..
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~------~~~~~~A~~~~~~Al-~--~~ 386 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR------AEGIKSGRMIFKKAR-E--DA 386 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH-T--CT
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHH------hcCHHHHHHHHHHHH-h--cc
Confidence 332 34456677777888999999999999999843322 2344444333222 389999999999998 3 33
Q ss_pred Cc-HHHHHHHHHH-hHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCC
Q 012365 359 PS-RKCLDFLLGA-CVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDP 427 (465)
Q Consensus 359 p~-~~~~~~ll~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 427 (465)
|+ ...|...... +...|+.++|..+|++..+. .|.++..|..++..+.+.|+.++|..+|++.+..++
T Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~-~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 387 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 43 2333222222 33589999999999999986 366788999999999999999999999999987654
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=1.4e-15 Score=136.78 Aligned_cols=262 Identities=9% Similarity=-0.046 Sum_probs=158.0
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHh
Q 012365 13 SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92 (465)
Q Consensus 13 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 92 (465)
.|..+...+...|++++|+.+|+++.+... .+...+..+..++...|++++|.+.++.+.+.. +.+..++..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 344555666666777777777776665432 255566666666666666666666666666553 345666666666666
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 012365 93 KIKDFDSAYSLLDDLKEMNLMPTASMYNAI--------------MA-GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYL 157 (465)
Q Consensus 93 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 157 (465)
..|++++|...+++..... +.+...+..+ .. .+...|++++|.+.++++
T Consensus 101 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~--------------- 164 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA--------------- 164 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHH---------------
T ss_pred HcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHH---------------
Confidence 6666666666666665542 1222222222 11 133333444444444333
Q ss_pred HHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHH
Q 012365 158 IHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAI 237 (465)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 237 (465)
.+.. +.+..++..+...+...|++++|.+.+++.....+....+|..+...+...|++++|.
T Consensus 165 -----------------~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 165 -----------------LEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp -----------------HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred -----------------HhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 3322 2256677777788888888888888887732222223335777888888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCC-------------ccchhhHhhHhhhcCChhHH
Q 012365 238 IVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW-------------MDGCCRLILHCVRFKQLSSA 304 (465)
Q Consensus 238 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~a 304 (465)
..++++.+... .+...+..+...+...|++++|...+++..+.... +..+..+...+...|++++|
T Consensus 227 ~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 305 (327)
T 3cv0_A 227 DAYNRALDINP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV 305 (327)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence 88888877652 34667777778888888888888888776543222 23344555566666666666
Q ss_pred HHHHHHH
Q 012365 305 TDLLKQL 311 (465)
Q Consensus 305 ~~~~~~~ 311 (465)
..++++.
T Consensus 306 ~~~~~~~ 312 (327)
T 3cv0_A 306 ELTYAQN 312 (327)
T ss_dssp HHHTTCC
T ss_pred HHHHHHH
Confidence 6666543
No 30
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.71 E-value=1.9e-13 Score=130.07 Aligned_cols=370 Identities=11% Similarity=0.033 Sum_probs=280.5
Q ss_pred CCHHHHHHHHHHHhc----ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCC
Q 012365 9 PSSASYKKLITYSCD----LLKVHVALDVVEQMVQGELVPSTETINSILHACEE----SYEFNLVRRIYPMICHHNLKPN 80 (465)
Q Consensus 9 p~~~~y~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 80 (465)
-++..+..+-..|.. .+++++|+..|+...+.| +...+..|...+.. .+++++|.+.|++..+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 377788888888888 899999999999998875 56788888888888 899999999999999876 6
Q ss_pred HHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHH
Q 012365 81 SETFRSMISLNVK----IKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR----KKDVQGALMVLKEMEQANVKPDSQ 152 (465)
Q Consensus 81 ~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~ 152 (465)
+..+..|...|.. .+++++|...|++..+.| +...+..|...|.. .++.++|.+.|++..+.| +..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 7778888888887 789999999999998865 67788888888887 889999999999998875 344
Q ss_pred HHHHHHHhh-------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhcCCCCChHHHHH
Q 012365 153 TFSYLIHNC-------SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTT----CGEFEKARQVVLDAEIPVKSRSEVKS 221 (465)
Q Consensus 153 ~~~~ll~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~ 221 (465)
.+..+-..+ .+...+.+.++...+.+ +...+..+...|.. .+++++|.+.|++......+ ..+.
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~--~a~~ 259 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNS--IAQF 259 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCH--HHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH--HHHH
Confidence 444333332 34455666777776665 56778888888876 88999999999974333322 2366
Q ss_pred HHHHHHHc----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-----CcHHHHHHHHHHHcCCCCCccchhhHh
Q 012365 222 ALVSALAS----HGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE-----GELNRLIQLLEEVHDPDYWMDGCCRLI 292 (465)
Q Consensus 222 ~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~ 292 (465)
.+...|.. .+++++|+.+|++..+.| ++..+..+-..+... ++.++|...++...+.+. ++....+.
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~-~~a~~~lg 335 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD-ATAQANLG 335 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC-HHHHHHHH
Confidence 67777777 899999999999998776 566777777788776 899999999999887653 34556666
Q ss_pred hHhhhcC---ChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHH
Q 012365 293 LHCVRFK---QLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLG 369 (465)
Q Consensus 293 ~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~ 369 (465)
..|...| ++++|++.|++..+.+. ...++.+-..+.. +....+++++|++.|++.. +.+ ++..+..|..
T Consensus 336 ~~y~~~g~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~y~~--g~g~~~~~~~A~~~~~~A~-~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 336 AIYFRLGSEEEHKKAVEWFRKAAAKGE--KAAQFNLGNALLQ--GKGVKKDEQQAAIWMRKAA-EQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHH--TSSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHH
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHCCC--HHHHHHHHHHHHc--CCCCCCCHHHHHHHHHHHH-hCC---CHHHHHHHHH
Confidence 6665545 78999999999988532 2233332222222 1222589999999999998 544 4667777888
Q ss_pred HhHh----hhhhhHHHHHHHHHHHcCCC-C-ChhHHHHHHHHHH
Q 012365 370 ACVN----ARDLKRAHLIWKEYENAGLP-Y-NVLSYLWMYKAFL 407 (465)
Q Consensus 370 ~~~~----~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~l~~~~~ 407 (465)
.|.. .++.++|...|++..+.+.. | +......+...+.
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH
Confidence 8877 79999999999999987632 2 4445555544433
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=6.1e-15 Score=132.52 Aligned_cols=279 Identities=10% Similarity=0.004 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012365 46 TETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125 (465)
Q Consensus 46 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 125 (465)
...+..+...+...|++++|..+++.+.+.. +.+..++..+..++...|++++|...|++..+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3456677788899999999999999998865 5578899999999999999999999999998875 5678899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhcCCHHHH
Q 012365 126 YFRKKDVQGALMVLKEMEQANVKPDSQ-TFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALIN--AYTTCGEFEKA 202 (465)
Q Consensus 126 ~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a 202 (465)
+...|++++|.+.++++.+.. |+.. .+..+... .|+......+.. .+...|++++|
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQA-------------------DVDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS--TTTTTC---------------------------------------CCTTSHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHH-------------------HHHHHHHHHHHHhHHHHHcccHHHH
Confidence 999999999999999998752 3211 11111000 011111111211 25556666667
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCC
Q 012365 203 RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPD 282 (465)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 282 (465)
.+.+++.....+....++..+...+...|++++|.+.++++.+... .+..++..+...+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~------------------ 218 (327)
T 3cv0_A 158 RTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLAN------------------ 218 (327)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHH------------------
Confidence 6666652222222223456666666666666666666666655431 123334333333333
Q ss_pred CCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHH
Q 012365 283 YWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRK 362 (465)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~ 362 (465)
.|++++|...|++..+ . .+.+..
T Consensus 219 ---------------~~~~~~A~~~~~~a~~-----------------------------------------~-~~~~~~ 241 (327)
T 3cv0_A 219 ---------------GNRPQEALDAYNRALD-----------------------------------------I-NPGYVR 241 (327)
T ss_dssp ---------------TTCHHHHHHHHHHHHH-----------------------------------------H-CTTCHH
T ss_pred ---------------cCCHHHHHHHHHHHHH-----------------------------------------c-CCCCHH
Confidence 3333333333333322 1 122455
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCC------------ChhHHHHHHHHHHhcCChhhHHHHHhccCC
Q 012365 363 CLDFLLGACVNARDLKRAHLIWKEYENAGLPY------------NVLSYLWMYKAFLASGNRKSASKLLSKMPK 424 (465)
Q Consensus 363 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 424 (465)
.+..+...+...|++++|.+.++++.+.. |. +..+|..+..+|.+.|++++|..++++.++
T Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 242 VMYNMAVSYSNMSQYDLAAKQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 67778888889999999999999988753 22 477899999999999999999999988765
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=7.3e-15 Score=129.28 Aligned_cols=236 Identities=11% Similarity=0.086 Sum_probs=183.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 012365 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLE-PRAVIALIEHLN 263 (465)
Q Consensus 185 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~ 263 (465)
....+..+|...|+++.|...++. ...+...++..+...+...|+.++|++.++++...+..|+ +..+..+..++.
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~ 112 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYF 112 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH
Confidence 344567889999999999987753 2333444678888899999999999999999988775565 455566668889
Q ss_pred ccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhh
Q 012365 264 SEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQI 343 (465)
Q Consensus 264 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 343 (465)
..|++++|.+.++. +..++.+..++..+.+.|++++|.+.|+++.... |+.. ...+...++.... ..|++++
T Consensus 113 ~~g~~~~Al~~l~~----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-p~~~-~~~l~~a~~~l~~--~~~~~~e 184 (291)
T 3mkr_A 113 YDQNPDAALRTLHQ----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD-EDAT-LTQLATAWVSLAA--GGEKLQD 184 (291)
T ss_dssp HTTCHHHHHHHHTT----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-HHHHHHHHHHHHH--CTTHHHH
T ss_pred HCCCHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-cCcH-HHHHHHHHHHHHh--CchHHHH
Confidence 99999999999987 4456677778888889999999999999998753 3322 1111111111111 2489999
Q ss_pred hHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhh-HHHHHhcc
Q 012365 344 GLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKS-ASKLLSKM 422 (465)
Q Consensus 344 A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~m 422 (465)
|..+|+++. .. .+.+...++.+..++.+.|++++|...|++..+. -|.++.++..++..+...|+.++ +.++++++
T Consensus 185 A~~~~~~~l-~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 185 AYYIFQEMA-DK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK-DSGHPETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp HHHHHHHHH-HH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHH-Hh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999999 43 4457888999999999999999999999999987 37788899999999999999976 67999999
Q ss_pred CCCCCChhHHHH
Q 012365 423 PKDDPHVRFVIQ 434 (465)
Q Consensus 423 ~~~~~~~~~~l~ 434 (465)
++.+|....+.+
T Consensus 262 ~~~~P~~~~~~d 273 (291)
T 3mkr_A 262 KDAHRSHPFIKE 273 (291)
T ss_dssp HHHCTTCHHHHH
T ss_pred HHhCCCChHHHH
Confidence 998887665554
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=1.1e-14 Score=128.24 Aligned_cols=56 Identities=4% Similarity=-0.023 Sum_probs=25.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 012365 86 SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145 (465)
Q Consensus 86 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 145 (465)
.+..+|...|+++.|...++.. -+|+..++..+...+...|+.++|++.++++...
T Consensus 39 ~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~ 94 (291)
T 3mkr_A 39 FLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSR 94 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Confidence 3344444455554444433221 1334444444444455555555555555554443
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.67 E-value=6.9e-13 Score=133.51 Aligned_cols=354 Identities=11% Similarity=0.047 Sum_probs=263.1
Q ss_pred HHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccC
Q 012365 16 KLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIK 95 (465)
Q Consensus 16 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 95 (465)
.+...+...|.+++|..+|++.. -.....+.++. ..+++++|.++.++. -++.+|..+..++...|
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCC
Confidence 34566777899999999998852 12223333333 667899999888754 35789999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHH
Q 012365 96 DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLK 175 (465)
Q Consensus 96 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~ 175 (465)
++++|.+.|.+. .|...|..++.++.+.|++++|.+.|...++.. +++...+.+..+|++.++... ++...
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rlee-le~fI 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAE-LEEFI 1190 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHH-HHHHH
Confidence 999999999553 478889999999999999999999999877654 333333347777777776665 33333
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHH
Q 012365 176 SAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV 255 (465)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 255 (465)
+ .++...+..+...|...|++++|..+|... ..|..+...|++.|++++|.+.+++. .+..+|
T Consensus 1191 ~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aW 1253 (1630)
T 1xi4_A 1191 N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTW 1253 (1630)
T ss_pred h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHH
Confidence 2 446677778999999999999999999853 24999999999999999999999877 367899
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhc
Q 012365 256 IALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIAT 335 (465)
Q Consensus 256 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 335 (465)
..+-.+|...|++..|......+. ..++.+..++..|.+.|.+++|+.+++...... +.......-+..++..
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~Ii---v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK--- 1326 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHIV---VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK--- 1326 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhh---cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh---
Confidence 999999999999999988766532 345667788899999999999999998877632 3333333333333333
Q ss_pred CCCCchhhhHHhHHHHHhhcCCCC------cHHHHHHHHHHhHhhhhhhHHHH-------------HHHHHHHcCCCCCh
Q 012365 336 TDPPDVQIGLDLLQFIKDELGLPP------SRKCLDFLLGACVNARDLKRAHL-------------IWKEYENAGLPYNV 396 (465)
Q Consensus 336 ~~~~~~~~A~~~~~~m~~~~~~~p------~~~~~~~ll~~~~~~g~~~~A~~-------------~~~~m~~~g~~p~~ 396 (465)
..+++..++++.|..-. .+.| +...|.-+.-.|.+.|+++.|.. .|++... ...|+
T Consensus 1327 y~peklmEhlk~f~~ri---ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~ 1401 (1630)
T 1xi4_A 1327 FKPQKMREHLELFWSRV---NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANV 1401 (1630)
T ss_pred CCHHHHHHHHHHHHHhc---ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccH
Confidence 34678888888887554 4444 45678889999999999999872 2223222 25677
Q ss_pred hHHHHHHHHHHhcC---------------ChhhHHHHHhc
Q 012365 397 LSYLWMYKAFLASG---------------NRKSASKLLSK 421 (465)
Q Consensus 397 ~~~~~l~~~~~~~g---------------~~~~A~~~~~~ 421 (465)
..|.-.+.-|...+ +++.+.+++++
T Consensus 1402 elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~ 1441 (1630)
T 1xi4_A 1402 ELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSK 1441 (1630)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHH
Confidence 77777777777666 67777777664
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.66 E-value=4.6e-12 Score=127.70 Aligned_cols=328 Identities=13% Similarity=0.112 Sum_probs=244.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 012365 45 STETINSILHACEESYEFNLVRRIYPMICHHN--LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122 (465)
Q Consensus 45 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 122 (465)
|+.-....+++|...|.+.++.++++++.-.+ +.-+....+.++.+..+. +..+..++.+++... + ...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHH
Confidence 34444567788889999999999999998432 113456777777777777 567777776666532 2 3347
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 012365 123 MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKA 202 (465)
Q Consensus 123 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 202 (465)
...+...|.+++|..+|++.. -.....+.++....+.+++.++.+.. -++.+|..+..++...|++++|
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHH
Confidence 778888999999999999952 23334466666666666555555533 2578899999999999999999
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCC
Q 012365 203 RQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPD 282 (465)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 282 (465)
.+.|.+. . +...|..++.++.+.|++++|.+++....+.. +++...+.+..+|++.+++++...+++ +
T Consensus 1125 IdsYiKA----d-D~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~-----~ 1192 (1630)
T 1xi4_A 1125 IDSYIKA----D-DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-----G 1192 (1630)
T ss_pred HHHHHhc----C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh-----C
Confidence 9999742 2 22348889999999999999999999877765 444444468899999999886555432 3
Q ss_pred CCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHH
Q 012365 283 YWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRK 362 (465)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~ 362 (465)
.....+..+...|...|++++|..+|.... .|..+...+... |++++|.+.+++.. +..
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~--------ny~rLA~tLvkL------ge~q~AIEaarKA~-------n~~ 1251 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS--------NFGRLASTLVHL------GEYQAAVDGARKAN-------STR 1251 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhh--------HHHHHHHHHHHh------CCHHHHHHHHHHhC-------CHH
Confidence 344566678888999999999999998852 344444444433 88999999998775 457
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCCh
Q 012365 363 CLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHV 429 (465)
Q Consensus 363 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 429 (465)
+|..+-.+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++..+..++..
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH 1313 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAH 1313 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhH
Confidence 898888999999999998876543 34567778899999999999999999999988776543
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=7.1e-14 Score=120.86 Aligned_cols=226 Identities=13% Similarity=0.062 Sum_probs=180.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCC--CCC----HHHH
Q 012365 183 KYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC--NLE----PRAV 255 (465)
Q Consensus 183 ~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~p~----~~~~ 255 (465)
...+..+...+...|++++|...|++. ... ....+|..+...+...|++++|...+.+..+... .|+ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 456777888999999999999999873 223 3344588999999999999999999999877541 122 5778
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhc
Q 012365 256 IALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIAT 335 (465)
Q Consensus 256 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 335 (465)
..+...+...|++++|...++...+.... ...+...|++++|...++.+....+.+...+..+...++.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFT---- 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH----
Confidence 88999999999999999999998764433 2345578889999999999888443333334433333333
Q ss_pred CCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhH
Q 012365 336 TDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSA 415 (465)
Q Consensus 336 ~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 415 (465)
.|++++|+..+++.. ... +.+...|..+..++...|++++|...+++..+.. |.+..+|..+...|.+.|++++|
T Consensus 152 --~~~~~~A~~~~~~a~-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 152 --KSDWPNAVKAYTEMI-KRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp --TTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred --hcCHHHHHHHHHHHH-hcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHH
Confidence 399999999999998 322 2357788899999999999999999999999873 67788999999999999999999
Q ss_pred HHHHhccCCCC
Q 012365 416 SKLLSKMPKDD 426 (465)
Q Consensus 416 ~~~~~~m~~~~ 426 (465)
...+++..+.+
T Consensus 227 ~~~~~~a~~~~ 237 (258)
T 3uq3_A 227 LETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999998776
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.60 E-value=1.3e-13 Score=115.81 Aligned_cols=134 Identities=13% Similarity=0.020 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 012365 8 TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSM 87 (465)
Q Consensus 8 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 87 (465)
+++...+..+...+.+.|++++|+..|++..+..+. +...+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 455566666666666677777777777766665332 55666666666666677777777776666654 3455666666
Q ss_pred HHHHhcc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012365 88 ISLNVKI-----------KDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQ 144 (465)
Q Consensus 88 i~~~~~~-----------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 144 (465)
..++... |++++|...|++..+.. |-+...|..+...+...|++++|+..|++..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 146 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALA 146 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 6666666 66666666665555443 33445555555555556666666555555543
No 38
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.58 E-value=1.8e-13 Score=119.60 Aligned_cols=223 Identities=14% Similarity=0.031 Sum_probs=148.5
Q ss_pred HhcccCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCH
Q 012365 21 SCDLLKVHVALDVVEQMVQGELV---PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDF 97 (465)
Q Consensus 21 ~~~~g~~~~A~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 97 (465)
+...|++++|++.|+.+.+.... .+..++..+...+...|++++|...|+.+.+.. +.+..++..+...+...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 34568999999999999886421 245678888889999999999999999998875 55789999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHc
Q 012365 98 DSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA 177 (465)
Q Consensus 98 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 177 (465)
++|...|++..+.. +.+...|..+...+...|++++|.+.|+++.+. .|+......
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~--------------------- 149 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSL--------------------- 149 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH---------------------
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHH---------------------
Confidence 99999999998865 457889999999999999999999999998864 233222111
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCC---CHH
Q 012365 178 GGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNL---EPR 253 (465)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~ 253 (465)
.+..+...|++++|...+++ ....+.... .+ .++..+...++.++|...+.+........ +..
T Consensus 150 -----------~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 216 (275)
T 1xnf_A 150 -----------WLYLAEQKLDEKQAKEVLKQHFEKSDKEQW-GW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSE 216 (275)
T ss_dssp -----------HHHHHHHHHCHHHHHHHHHHHHHHSCCCST-HH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred -----------HHHHHHHhcCHHHHHHHHHHHHhcCCcchH-HH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccH
Confidence 11122333555555555543 111111111 12 24444455555555555555554332100 124
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHcCC
Q 012365 254 AVIALIEHLNSEGELNRLIQLLEEVHDP 281 (465)
Q Consensus 254 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 281 (465)
.+..+...+...|++++|...+++....
T Consensus 217 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 217 TNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 4455555555556666666655555543
No 39
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.58 E-value=1.2e-12 Score=112.81 Aligned_cols=201 Identities=12% Similarity=0.032 Sum_probs=102.3
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 012365 12 ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLN 91 (465)
Q Consensus 12 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 91 (465)
..|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 344445555555555555555555554432 1244455555555555555555555555555443 23445555555555
Q ss_pred hccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHH
Q 012365 92 VKIKDFDSAYSLLDDLKEMNLMP-TASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY 170 (465)
Q Consensus 92 ~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 170 (465)
...|++++|..+|++....+..| +...+..+...+...|++++|.+.|++..+..
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------------------------ 171 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN------------------------ 171 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------------------------
Confidence 55555555555555554411122 33444455555555555555555555544321
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcC
Q 012365 171 YEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247 (465)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 247 (465)
+.+...+..+...+...|++++|...+++.....+.....+..+...+...|++++|.+.++++.+..
T Consensus 172 ---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 172 ---------RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp ---------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 11344455555666666666666666665322222223335555666666666666666666666544
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=7.1e-13 Score=114.50 Aligned_cols=221 Identities=13% Similarity=0.008 Sum_probs=116.1
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCC----HHHHH
Q 012365 12 ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNL--KPN----SETFR 85 (465)
Q Consensus 12 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 85 (465)
..|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|.+.++...+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 445555566666666666666666665544 4555566666666666666666666665554320 111 34555
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChh
Q 012365 86 SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE 165 (465)
Q Consensus 86 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 165 (465)
.+...+...|++++|...|++.... .|+. ..+.+.|++++|.+.++++....
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~------------------- 135 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN------------------- 135 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-------------------
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-------------------
Confidence 5555555555555555555555543 2332 22333444555555555444320
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 012365 166 DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244 (465)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 244 (465)
+.+...+..+...+...|++++|.+.|++. ...+.. ..+|..+...|...|++++|...+++..
T Consensus 136 --------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 136 --------------PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-ARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp --------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --------------cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 112334455555666666666666666652 222222 2235566666666666666666666665
Q ss_pred HcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHH
Q 012365 245 EAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEV 278 (465)
Q Consensus 245 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 278 (465)
+... .+...+..+..++.+.|++++|...++..
T Consensus 201 ~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 201 EKDP-NFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5441 23445555555555555555555555444
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.57 E-value=4.8e-13 Score=112.33 Aligned_cols=199 Identities=16% Similarity=0.145 Sum_probs=143.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 012365 43 VPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122 (465)
Q Consensus 43 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 122 (465)
+++...+..+...+...|++++|...|+...+.. +.+...+..+..++.+.|++++|...|++..+.. |.+...|..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4567788888888999999999999999998876 5678899999999999999999999999988775 5567888888
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012365 123 MAGYFRK-----------KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALIN 191 (465)
Q Consensus 123 i~~~~~~-----------g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (465)
...+... |++++|+..|++..+. .| -+...+..+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P-------------------------------~~~~~~~~lg~ 126 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NP-------------------------------RYAPLHLQRGL 126 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CT-------------------------------TCHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--Cc-------------------------------ccHHHHHHHHH
Confidence 8888888 7888887777776653 12 24556667777
Q ss_pred HHHhcCCHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHH
Q 012365 192 AYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNR 270 (465)
Q Consensus 192 ~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 270 (465)
++...|++++|+..|++ +... .....+..+...|...|++++|+..|++..+... .+...+..+...+...|++++
T Consensus 127 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~ 203 (217)
T 2pl2_A 127 VYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEE 203 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC------
T ss_pred HHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHH
Confidence 88888888888888887 3333 3344577888888888888888888888887652 246677777888888888888
Q ss_pred HHHHHHHHc
Q 012365 271 LIQLLEEVH 279 (465)
Q Consensus 271 a~~~~~~~~ 279 (465)
|...+++..
T Consensus 204 A~~~~~~~~ 212 (217)
T 2pl2_A 204 AARAAALEH 212 (217)
T ss_dssp ---------
T ss_pred HHHHHHHHh
Confidence 888777654
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.56 E-value=2.4e-12 Score=108.57 Aligned_cols=209 Identities=9% Similarity=-0.092 Sum_probs=151.4
Q ss_pred CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 012365 10 SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89 (465)
Q Consensus 10 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 89 (465)
+...|..+...+...|++++|++.|+...+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45677788888888888888888888887754 2357778888888888888888888888887764 456778888888
Q ss_pred HHhcc-CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHH
Q 012365 90 LNVKI-KDFDSAYSLLDDLKEMNLMP-TASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDI 167 (465)
Q Consensus 90 ~~~~~-g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 167 (465)
.+... |++++|...++++.+.+..| +...+..+...+...|++++|.+.|+++.+.. |
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~------------------ 144 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--P------------------ 144 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--T------------------
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C------------------
Confidence 88888 88888888888887632223 35677778888888888888888888776431 1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHc
Q 012365 168 IKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA 246 (465)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 246 (465)
.+...+..+...+...|++++|.+.+++. ...+......+..+...+...|+.+.|..+++.+...
T Consensus 145 -------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 145 -------------QFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp -------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 13455666777788888888888888763 2233123334666777777888888888888887765
Q ss_pred CCCCCHHHH
Q 012365 247 GCNLEPRAV 255 (465)
Q Consensus 247 ~~~p~~~~~ 255 (465)
. |+...+
T Consensus 212 ~--p~~~~~ 218 (225)
T 2vq2_A 212 F--PYSEEL 218 (225)
T ss_dssp C--TTCHHH
T ss_pred C--CCCHHH
Confidence 4 444433
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.55 E-value=2e-13 Score=119.23 Aligned_cols=245 Identities=10% Similarity=-0.034 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCC--HHHHHHHHH
Q 012365 184 YVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLE--PRAVIALIE 260 (465)
Q Consensus 184 ~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~ 260 (465)
..+......+...|++++|...|++ +...+.... .+..+...|...|++++|+..+++..+....|+ ...+..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPY-IYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCST-THHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 3445566778888888888888887 333333332 477788888888899999888888887432222 334777888
Q ss_pred HHHccCcHHHHHHHHHHHcCCCC-CccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCC
Q 012365 261 HLNSEGELNRLIQLLEEVHDPDY-WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPP 339 (465)
Q Consensus 261 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 339 (465)
.+...|++++|...++...+..+ .+..+..+...+...|++++|+..|++..+..+.+...+..+-...+.. +
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~------~ 156 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN------K 156 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT------T
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH------H
Confidence 88888889988888888766443 3456677777888888999999888888775333333333333133333 6
Q ss_pred chhhhHHhHHHHHhhcCCCC-cHHHHHHHHHHhHhhhh---hhHHHHHHHHHHHcC-CCCC------hhHHHHHHHHHHh
Q 012365 340 DVQIGLDLLQFIKDELGLPP-SRKCLDFLLGACVNARD---LKRAHLIWKEYENAG-LPYN------VLSYLWMYKAFLA 408 (465)
Q Consensus 340 ~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~~~~~l~~~~~~ 408 (465)
++++|+..|+++. + ..| +...+..+..++...|+ .++|...+++..+.. -.|+ ..+|..+...|..
T Consensus 157 ~~~~A~~~~~~a~-~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 157 EYVKADSSFVKVL-E--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp CHHHHHHHHHHHH-H--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-H--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 8999999999888 3 344 35667777778888888 888999998887641 1233 2578888899999
Q ss_pred cCChhhHHHHHhccCCCCCChhHHHHHHHh
Q 012365 409 SGNRKSASKLLSKMPKDDPHVRFVIQACKQ 438 (465)
Q Consensus 409 ~g~~~~A~~~~~~m~~~~~~~~~~l~~~~~ 438 (465)
.|++++|.+.++++++.+|...........
T Consensus 234 ~~~~~~A~~~~~~al~~~p~~~~a~~~l~~ 263 (272)
T 3u4t_A 234 NRDKVKADAAWKNILALDPTNKKAIDGLKM 263 (272)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHhcCccHHHHHHHhhh
Confidence 999999999999999888876655544433
No 44
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.54 E-value=4.3e-12 Score=120.22 Aligned_cols=322 Identities=11% Similarity=-0.043 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhC-----C-C-CCCHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHcCCCCCHH
Q 012365 47 ETINSILHACEESYEFNLVRRIYPMICHH-----N-L-KPNSETFRSMISLNVKI--KDFDSAYSLLDDLKEMNLMPTAS 117 (465)
Q Consensus 47 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~-~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~~~~~ 117 (465)
.+|+.+..++...|++++|...+++..+. + . .....++..+..++... +++++|...|++..... |-+..
T Consensus 95 ~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~ 173 (472)
T 4g1t_A 95 VTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPE 173 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHH
Confidence 44555555555555555555555444321 0 0 11233444333333322 34555555555554432 22233
Q ss_pred HHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhh-------CChhHHHHHHHHHHHcCCCCCHHHHH
Q 012365 118 MYNAIMAG---YFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC-------SNEEDIIKYYEQLKSAGGQITKYVFM 187 (465)
Q Consensus 118 ~~~~li~~---~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (465)
.+..+... +...++.++|++.+++..+.. +.+...+..+...+ .+...+.+.++...... +.+..++.
T Consensus 174 ~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~ 251 (472)
T 4g1t_A 174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLR 251 (472)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHH
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHH
Confidence 33333322 223344455555555544321 11222222221111 11233444444444433 33566677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHc-------------------CCChhHHHHHHHHHHHcC
Q 012365 188 ALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALAS-------------------HGRTSDAIIVYEEIKEAG 247 (465)
Q Consensus 188 ~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~-------------------~g~~~~a~~~~~~m~~~~ 247 (465)
.+...|...|++++|.+.+++. ...+... .++..+...|.. .+.++.|...+....+..
T Consensus 252 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 330 (472)
T 4g1t_A 252 SAAKFYRRKDEPDKAIELLKKALEYIPNNA-YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN 330 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHhCCChH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC
Confidence 7778888888888888888763 3333332 235555444432 123566777777777655
Q ss_pred CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCccch----hhHh-hHhhhcCChhHHHHHHHHHHHcccchhHHH
Q 012365 248 CNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGC----CRLI-LHCVRFKQLSSATDLLKQLKDKFKDDEMAM 322 (465)
Q Consensus 248 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 322 (465)
. .+..++..+...+...|++++|...|++..+....+... ..+. ......|++++|+..|.+..+.. |.....
T Consensus 331 ~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~-~~~~~~ 408 (472)
T 4g1t_A 331 D-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN-QKSREK 408 (472)
T ss_dssp T-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC-CCCHHH
T ss_pred C-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHH
Confidence 2 234566778888999999999999999887655443321 1221 12346788999999999887732 222221
Q ss_pred HHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcC
Q 012365 323 EYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAG 391 (465)
Q Consensus 323 ~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 391 (465)
. +....+.++++... . .-+.++.+|..+...|...|++++|.+.|++..+.|
T Consensus 409 ~---------------~~~~~l~~~~~~~l-~-~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 409 E---------------KMKDKLQKIAKMRL-S-KNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp H---------------HHHHHHHHHHHHHH-H-HCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred H---------------HHHHHHHHHHHHHH-H-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 1 22233444555544 2 123366789999999999999999999999999864
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=8.9e-13 Score=112.85 Aligned_cols=202 Identities=7% Similarity=0.035 Sum_probs=131.7
Q ss_pred CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 012365 10 SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89 (465)
Q Consensus 10 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 89 (465)
+...|..+...+...|++++|+..|+++.+... .+...+..+...+...|++++|.+.++.+.+.. +.+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 455677777777888888888888888877533 367777777778888888888888888877764 456777888888
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHH
Q 012365 90 LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK 169 (465)
Q Consensus 90 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 169 (465)
.+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++++.+.. |
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~-------------------- 156 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--E-------------------- 156 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--T--------------------
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--C--------------------
Confidence 8888888888888888877654 4567777778888888888888888887776431 1
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcC
Q 012365 170 YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247 (465)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 247 (465)
.+...+..+...+...|++++|.+.|++.....+....++..+...|...|++++|...++++.+..
T Consensus 157 -----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 157 -----------NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp -----------TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred -----------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 1344566667777778888888888876322222223347777778888888888888888877765
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=3.4e-12 Score=107.65 Aligned_cols=202 Identities=8% Similarity=0.006 Sum_probs=150.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012365 45 STETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124 (465)
Q Consensus 45 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 124 (465)
+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|...|++..... +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45667777888888899999999988888764 4567888888888888899999999988887764 456778888888
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 012365 125 GYFRK-KDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203 (465)
Q Consensus 125 ~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 203 (465)
.+... |++++|...++++.+.+..| .+...+..+..++...|++++|.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~~~~~~~~A~ 133 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYP-------------------------------TPYIANLNKGICSAKQGQFGLAE 133 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCS-------------------------------CHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCc-------------------------------chHHHHHHHHHHHHHcCCHHHHH
Confidence 88888 88999888888887621111 12455666777788888888888
Q ss_pred HHHHHh-cCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcC
Q 012365 204 QVVLDA-EIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280 (465)
Q Consensus 204 ~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 280 (465)
+.|++. ...+.. ...+..+...+...|++++|...+++..+.....+...+..+...+...|+.+.+..+++.+.+
T Consensus 134 ~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 134 AYLKRSLAAQPQF-PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHSTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCC-chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 888773 223332 3347778888888888888888888887765313566666666777777777777777777653
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.52 E-value=3.6e-12 Score=109.76 Aligned_cols=199 Identities=10% Similarity=0.015 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012365 47 ETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126 (465)
Q Consensus 47 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 126 (465)
..+..+...+...|++++|.+.++.+.+.. +.+..++..+...+...|++++|...|++..+.. +.+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 344455555555666666666666655543 3345555555566666666666666666555443 33455555555556
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012365 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206 (465)
Q Consensus 127 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 206 (465)
...|++++|.+.|+++.+.+..|+ +...+..+...+...|++++|.+.|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~-------------------------------~~~~~~~la~~~~~~g~~~~A~~~~ 164 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPE-------------------------------RSRVFENLGLVSLQMKKPAQAKEYF 164 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTT-------------------------------HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcc-------------------------------cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666666555544111111 2233444445555555666665555
Q ss_pred HHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHc
Q 012365 207 LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279 (465)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 279 (465)
++.....+.....+..+...+...|++++|...++++.+... .+...+..+...+...|+.++|...++.+.
T Consensus 165 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 165 EKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 542111111222355555555555555555555555554331 234444445555555555555555555443
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.50 E-value=3.9e-12 Score=115.72 Aligned_cols=229 Identities=10% Similarity=0.068 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 012365 11 SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYE-FNLVRRIYPMICHHNLKPNSETFRSMIS 89 (465)
Q Consensus 11 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~ 89 (465)
...|+.+...+.+.|++++|++.|++..+.... +...|+.+..++...|+ +++|+..++++.+.. +-+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 466778888888889999999999999886533 67888888888888896 999999999998876 557888999999
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHH
Q 012365 90 LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK 169 (465)
Q Consensus 90 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 169 (465)
++...|++++|...|++....+ +-+...|..+..++.+.|++++|+..|+++.+.. |+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~------------------- 232 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VR------------------- 232 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TT-------------------
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CC-------------------
Confidence 9999999999999999988776 5678889999999999999999999998887642 22
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHH-----HHHHHH-hcCCCCChHHHHHHHHHHHHcCC--ChhHHHHHH
Q 012365 170 YYEQLKSAGGQITKYVFMALINAYTT-CGEFEKA-----RQVVLD-AEIPVKSRSEVKSALVSALASHG--RTSDAIIVY 240 (465)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a-----~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~ 240 (465)
+...|+.+..++.. .|..++| ++.|++ +...+.... .|+.+...+...| ++++|++.+
T Consensus 233 ------------~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~-a~~~l~~ll~~~g~~~~~~a~~~~ 299 (382)
T 2h6f_A 233 ------------NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES-AWNYLKGILQDRGLSKYPNLLNQL 299 (382)
T ss_dssp ------------CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHH-HHHHHHHHHTTTCGGGCHHHHHHH
T ss_pred ------------CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHccCccchHHHHHHH
Confidence 44555666666666 4444555 355655 334444433 4777777777777 578888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccC---------cHHHHHHHHHHH
Q 012365 241 EEIKEAGCNLEPRAVIALIEHLNSEG---------ELNRLIQLLEEV 278 (465)
Q Consensus 241 ~~m~~~~~~p~~~~~~~ll~~~~~~g---------~~~~a~~~~~~~ 278 (465)
.++ +.. ..+...+..+...+.+.| ..++|.++++.+
T Consensus 300 ~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 300 LDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHh-ccC-CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 777 322 234666777777776653 235566666655
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.49 E-value=6.9e-11 Score=103.06 Aligned_cols=192 Identities=13% Similarity=0.017 Sum_probs=108.9
Q ss_pred CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 012365 10 SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEE----SYEFNLVRRIYPMICHHNLKPNSETFR 85 (465)
Q Consensus 10 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 85 (465)
+..++..+-..+...|++++|++.|++..+.+ +...+..+...+.. .+++++|.+.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34555566666666666666666666666522 34555556666666 666666666666666654 555666
Q ss_pred HHHHHHhc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 012365 86 SMISLNVK----IKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR----KKDVQGALMVLKEMEQANVKPDSQTFSYL 157 (465)
Q Consensus 86 ~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 157 (465)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|++.|++..+.+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----------- 144 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----------- 144 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-----------
Confidence 66666666 666666666666665543 55556666666666 666666666665544321
Q ss_pred HHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc----
Q 012365 158 IHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTT----CGEFEKARQVVLDAEIPVKSRSEVKSALVSALAS---- 229 (465)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 229 (465)
+...+..+...|.. .+++++|.+.|++..... ....+..+...|..
T Consensus 145 ------------------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 145 ------------------------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp ------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSS
T ss_pred ------------------------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCC
Confidence 23344555555555 566666666665421111 11224455555555
Q ss_pred CCChhHHHHHHHHHHHcC
Q 012365 230 HGRTSDAIIVYEEIKEAG 247 (465)
Q Consensus 230 ~g~~~~a~~~~~~m~~~~ 247 (465)
.+++++|+..|++..+.+
T Consensus 199 ~~~~~~A~~~~~~a~~~~ 216 (273)
T 1ouv_A 199 TKNFKEALARYSKACELE 216 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHhCC
Confidence 556666666665555543
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.49 E-value=4.9e-12 Score=110.24 Aligned_cols=231 Identities=13% Similarity=0.039 Sum_probs=130.4
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--CHHHHHHHHHH
Q 012365 13 SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKP--NSETFRSMISL 90 (465)
Q Consensus 13 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~ 90 (465)
.+......+...|++++|+..|+...+.... +...+..+..++...|++++|.+.++...+.+-.+ ...+|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3444556667777777777777777765432 44466667777777777777777777777632111 13346677777
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHH
Q 012365 91 NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY 170 (465)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 170 (465)
+...|++++|...|++..+.. +.+..+|..+...+...|++++|.+.|++..+. .|+
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~-------------------- 140 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTT-------------------- 140 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCC--------------------
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCC--------------------
Confidence 777777777777777776654 345566777777777777777777777665543 221
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHcCCC---hhHHHHHHHHHHHc
Q 012365 171 YEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASHGR---TSDAIIVYEEIKEA 246 (465)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~ 246 (465)
+...+..+...+...+++++|.+.|++. ...+.. ...+..+...+...|+ +++|...+++..+.
T Consensus 141 -----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 141 -----------DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI-YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp -----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred -----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 2233333331222233666666666652 222222 2234555555555555 55566666655443
Q ss_pred C-CCCC------HHHHHHHHHHHHccCcHHHHHHHHHHHc
Q 012365 247 G-CNLE------PRAVIALIEHLNSEGELNRLIQLLEEVH 279 (465)
Q Consensus 247 ~-~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 279 (465)
. -.|+ ...+..+...+...|++++|...+++..
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 248 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNIL 248 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 1122 1234444444455555555555554443
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.48 E-value=4.3e-12 Score=110.77 Aligned_cols=55 Identities=16% Similarity=0.003 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHH
Q 012365 361 RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLL 419 (465)
Q Consensus 361 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 419 (465)
...+..+...+...|++++|...|+++.+.. |.+.. ....++...|++++|.+-+
T Consensus 215 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 215 SETNFYLGKYYLSLGDLDSATALFKLAVANN-VHNFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CTTCH---HHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-chhHH---HHHHHHHHHHHHHhhHHHH
Confidence 3566677777778888888888888887652 22333 2345566777777777665
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.48 E-value=1.3e-10 Score=101.27 Aligned_cols=192 Identities=14% Similarity=0.052 Sum_probs=162.1
Q ss_pred CHHHHHHHHHHHhc----ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCH
Q 012365 10 SSASYKKLITYSCD----LLKVHVALDVVEQMVQGELVPSTETINSILHACEE----SYEFNLVRRIYPMICHHNLKPNS 81 (465)
Q Consensus 10 ~~~~y~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 81 (465)
+...+..+...|.. .+++++|++.|++..+.+ +...+..+...+.. .+++++|.+.|+...+.+ +.
T Consensus 37 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~ 110 (273)
T 1ouv_A 37 ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YA 110 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---Cc
Confidence 46778888888999 999999999999999876 77888899999999 999999999999999875 78
Q ss_pred HHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHH
Q 012365 82 ETFRSMISLNVK----IKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR----KKDVQGALMVLKEMEQANVKPDSQT 153 (465)
Q Consensus 82 ~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~ 153 (465)
..+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+
T Consensus 111 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~------- 180 (273)
T 1ouv_A 111 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK------- 180 (273)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------
T ss_pred cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------
Confidence 899999999999 999999999999999865 67788888888888 899999999999877542
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc
Q 012365 154 FSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTT----CGEFEKARQVVLDAEIPVKSRSEVKSALVSALAS 229 (465)
Q Consensus 154 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (465)
+...+..+...|.. .+++++|.+.|++...... ...+..+...|..
T Consensus 181 ----------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 181 ----------------------------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYN 230 (273)
T ss_dssp ----------------------------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHT
T ss_pred ----------------------------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHc
Confidence 23445556677777 8999999999987322222 3347788888988
Q ss_pred ----CCChhHHHHHHHHHHHcC
Q 012365 230 ----HGRTSDAIIVYEEIKEAG 247 (465)
Q Consensus 230 ----~g~~~~a~~~~~~m~~~~ 247 (465)
.+++++|.+.|++..+.|
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHT
T ss_pred CCCcccCHHHHHHHHHHHHHcC
Confidence 999999999999999887
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.48 E-value=1e-12 Score=112.47 Aligned_cols=209 Identities=15% Similarity=0.057 Sum_probs=124.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012365 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEH 261 (465)
Q Consensus 182 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 261 (465)
....+..+...+...|++++|...|++.....+.....+..+...+...|++++|.+.+++..+... .+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence 3455666666777777777777777764333333334567777777777777777777777776542 245566666666
Q ss_pred HHccCcHHHHHHHHHHHcCCCC-CccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCc
Q 012365 262 LNSEGELNRLIQLLEEVHDPDY-WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPD 340 (465)
Q Consensus 262 ~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 340 (465)
+...|++++|...++++.+... .+..+..+...+... |+
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~----------------------------------------~~ 140 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKL----------------------------------------EQ 140 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHT----------------------------------------SC
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----------------------------------------cc
Confidence 6666666666666665543221 111222222223333 66
Q ss_pred hhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHh
Q 012365 341 VQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLS 420 (465)
Q Consensus 341 ~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 420 (465)
+++|+..++++. .. ...+...+..+...+...|++++|...++++.+. .+.+..++..+...|.+.|++++|.+.++
T Consensus 141 ~~~A~~~~~~~~-~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 217 (243)
T 2q7f_A 141 PKLALPYLQRAV-EL-NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ-DPGHADAFYNAGVTYAYKENREKALEMLD 217 (243)
T ss_dssp HHHHHHHHHHHH-HH-CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHH-Hh-CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 666666666655 22 1235667777888888889999999999988876 36677788888889999999999999999
Q ss_pred ccCCCCCChhHHHH
Q 012365 421 KMPKDDPHVRFVIQ 434 (465)
Q Consensus 421 ~m~~~~~~~~~~l~ 434 (465)
++.+.+|.......
T Consensus 218 ~~~~~~p~~~~~~~ 231 (243)
T 2q7f_A 218 KAIDIQPDHMLALH 231 (243)
T ss_dssp HHHHHCTTCHHHHH
T ss_pred HHHccCcchHHHHH
Confidence 98887776554443
No 54
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.47 E-value=8.5e-12 Score=117.03 Aligned_cols=350 Identities=12% Similarity=0.030 Sum_probs=162.5
Q ss_pred HHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHhhCCCCCCHHHHHHHHHHHhc
Q 012365 17 LITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEF---NLVRRIYPMICHHNLKPNSETFRSMISLNVK 93 (465)
Q Consensus 17 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 93 (465)
+...+.+.|++++|+++|++..+.|. ...+..|...+...|+. ++|.+.|+...+. ++..+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 45566778999999999998877663 33444555556666777 8888888887754 45555666664444
Q ss_pred cC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHhhCChh
Q 012365 94 IK-----DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ---GALMVLKEMEQANVKPDSQTFSYLIHNCSNEE 165 (465)
Q Consensus 94 ~g-----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 165 (465)
.+ ++++|...|++..+.|. ++ .+..|...|...+..+ ++.+.+......|..........+...-....
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcc
Confidence 44 77889999988887662 32 6666777666655433 34444554444443222222222222212111
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcC----CChhHHHH
Q 012365 166 DIIKYYEQLKSAGGQITKYVFMALINAYTTCG---EFEKARQVVLDAEIPVKSRSEVKSALVSALASH----GRTSDAII 238 (465)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~ 238 (465)
........+.+.-...++..+..|...|...| +.++|.+.|++......+....+..+...|... +++++|.+
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 11111111111111112225556666666666 666777766653222222222234455555433 46667777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHH-H--HccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcC-----ChhHHHHHHHH
Q 012365 239 VYEEIKEAGCNLEPRAVIALIEH-L--NSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFK-----QLSSATDLLKQ 310 (465)
Q Consensus 239 ~~~~m~~~~~~p~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~a~~~~~~ 310 (465)
+|++.. .| ++..+..+-.. + ...++.++|...|++..+.+ .+.....+...|. .| ++++|...|++
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD-QPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 776665 33 33344444443 2 34666667777666665544 3334444444443 33 66666666666
Q ss_pred HHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHh----hhhhhHHHHHHHH
Q 012365 311 LKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVN----ARDLKRAHLIWKE 386 (465)
Q Consensus 311 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~ 386 (465)
.. .+ +....+ .+..++.. +.....+.++|...|++.. ..|. |+ ....|...|.. ..+.++|...|+.
T Consensus 313 Aa-~g--~~~A~~-~Lg~~y~~-G~g~~~d~~~A~~~~~~Aa-~~g~-~~--A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 313 AV-GR--EVAADY-YLGQIYRR-GYLGKVYPQKALDHLLTAA-RNGQ-NS--ADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp TT-TT--CHHHHH-HHHHHHHT-TTTSSCCHHHHHHHHHHHH-TTTC-TT--HHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred Hh-CC--CHHHHH-HHHHHHHC-CCCCCcCHHHHHHHHHHHH-hhCh-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 55 21 111111 12222222 1112346666666666666 4332 22 22233333332 3356666666666
Q ss_pred HHHcC
Q 012365 387 YENAG 391 (465)
Q Consensus 387 m~~~g 391 (465)
..+.|
T Consensus 384 A~~~g 388 (452)
T 3e4b_A 384 AKAQD 388 (452)
T ss_dssp HHTTC
T ss_pred HHHCC
Confidence 66655
No 55
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.46 E-value=2.7e-11 Score=113.60 Aligned_cols=349 Identities=11% Similarity=0.047 Sum_probs=219.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 012365 52 ILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDF---DSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128 (465)
Q Consensus 52 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 128 (465)
+...+.+.|++++|.++|+...+.| ++..+..|...|...|+. ++|...|++..+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5566778899999999999998876 334445566666777887 8999999988853 55667777775555
Q ss_pred cC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCC---hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---
Q 012365 129 KK-----DVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLKSAGGQITKYVFMALINAYTTCG--- 197 (465)
Q Consensus 129 ~g-----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 197 (465)
.+ +.++|++.|++..+.|...-......+...... ...+.+.+......|. ......+...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcc
Confidence 55 789999999999987754433333333322111 2223444444545553 445556667777777
Q ss_pred -CHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC---ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc----CcHH
Q 012365 198 -EFEKARQVVLDAEIPVKSRSEVKSALVSALASHG---RTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE----GELN 269 (465)
Q Consensus 198 -~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----g~~~ 269 (465)
+.+.+..+++...... +. .+..+...|...| ++++|++.|.+..+.|. ++...+..+-..|... ++.+
T Consensus 159 ~~~~~a~~~~~~a~~~~-~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 159 QHLDDVERICKAALNTT-DI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp GGHHHHHHHHHHHTTTC-TT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred cCHHHHHHHHHHHHcCC-HH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHH
Confidence 4555666665433222 22 4778888999999 99999999999999884 4555545666666554 7999
Q ss_pred HHHHHHHHHcCCCCCccchhhHhhH-h--hhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHH
Q 012365 270 RLIQLLEEVHDPDYWMDGCCRLILH-C--VRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLD 346 (465)
Q Consensus 270 ~a~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~ 346 (465)
+|...|+... .-.+.....+... + ...+++++|+..|++..+.+.+. ....+..++.. +.....++++|+.
T Consensus 235 ~A~~~~~~aa--~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~-G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 235 TAQALLEKIA--PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPR---AELLLGKLYYE-GKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHHHHG--GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHH---HHHHHHHHHHH-CSSSCCCHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHc-CCCCCCCHHHHHH
Confidence 9999999998 3345555555554 4 56899999999999988744222 22223333332 2222349999999
Q ss_pred hHHHHHhhcCCCCcHHHHHHHHHHhHh----hhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCChhhHHHH
Q 012365 347 LLQFIKDELGLPPSRKCLDFLLGACVN----ARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLA----SGNRKSASKL 418 (465)
Q Consensus 347 ~~~~m~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~ 418 (465)
.|++.. .-++..+..|...|.. ..+.++|...|++..+.| +......|...|.. ..+.++|..+
T Consensus 309 ~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 380 (452)
T 3e4b_A 309 HFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVF 380 (452)
T ss_dssp HHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHH
T ss_pred HHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 998764 3455666666666655 338999999999999876 45566777777764 4589999999
Q ss_pred HhccCCCCCC
Q 012365 419 LSKMPKDDPH 428 (465)
Q Consensus 419 ~~~m~~~~~~ 428 (465)
+++..+.+..
T Consensus 381 ~~~A~~~g~~ 390 (452)
T 3e4b_A 381 SQLAKAQDTP 390 (452)
T ss_dssp HHHHHTTCCH
T ss_pred HHHHHHCCCH
Confidence 9998887763
No 56
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.46 E-value=9.6e-10 Score=106.84 Aligned_cols=412 Identities=9% Similarity=0.036 Sum_probs=269.8
Q ss_pred CCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCC-CCCCHHH
Q 012365 8 TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYE---FNLVRRIYPMICHHN-LKPNSET 83 (465)
Q Consensus 8 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~ 83 (465)
+-|..+|..++..+.+.+.++.+..+|+++... .+.+...|...+..-.+.++ ++.+..+|+...... .+|++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 347889999999999999999999999999886 55577888888888888888 999999999998864 2489999
Q ss_pred HHHHHHHHhccCCH--------HHHHHHHHHHH-HcCC-CC-CHHHHHHHHHHHH---------hcCCHHHHHHHHHHHH
Q 012365 84 FRSMISLNVKIKDF--------DSAYSLLDDLK-EMNL-MP-TASMYNAIMAGYF---------RKKDVQGALMVLKEME 143 (465)
Q Consensus 84 ~~~li~~~~~~g~~--------~~a~~~~~~m~-~~~~-~~-~~~~~~~li~~~~---------~~g~~~~a~~~~~~m~ 143 (465)
|...+....+.++. +.+.++|+... ..|. .+ +...|...+.... ..++.+.+..+|+...
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 98888766665543 34557887754 4465 44 4578888887544 2345678889999887
Q ss_pred HCCCCCCHHHH---HHHHHhhCCh-------------hHHHHHHHHHHH--cCCC---------------C-----C---
Q 012365 144 QANVKPDSQTF---SYLIHNCSNE-------------EDIIKYYEQLKS--AGGQ---------------I-----T--- 182 (465)
Q Consensus 144 ~~~~~p~~~~~---~~ll~~~~~~-------------~~~~~~~~~~~~--~~~~---------------~-----~--- 182 (465)
......-..+| ..+....... ..+...+..+.. .++. | +
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 53222122333 2222222110 011122222221 1111 1 0
Q ss_pred HHHHHHHHHHHHhcC-------CHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHH-HHHHHHHHcCCCCCHHH
Q 012365 183 KYVFMALINAYTTCG-------EFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAI-IVYEEIKEAGCNLEPRA 254 (465)
Q Consensus 183 ~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~~~~p~~~~ 254 (465)
...|...+..--..+ ..+.+..+|++.-...+.....|...+.-+...|+.++|. ++|.+..... +.+...
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~L 380 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHH
Confidence 134444444333322 1233455676622222223335878888888889999997 9999998754 334555
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHcCCCC---------Cc--------------cchhhHhhHhhhcCChhHHHHHHHHH
Q 012365 255 VIALIEHLNSEGELNRLIQLLEEVHDPDY---------WM--------------DGCCRLILHCVRFKQLSSATDLLKQL 311 (465)
Q Consensus 255 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---------~~--------------~~~~~~~~~~~~~~~~~~a~~~~~~~ 311 (465)
+...+....+.|++++|.++|+.+.+... .| ..+...+....+.+..+.|..+|.+.
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66677888889999999999998875310 01 12334444455788999999999999
Q ss_pred HHc-ccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHc
Q 012365 312 KDK-FKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENA 390 (465)
Q Consensus 312 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 390 (465)
.+. .......| +.. ..+.....++.+.|..+|+... +. ..-+...|...+......|+.+.|+.+|+...+.
T Consensus 461 ~~~~~~~~~~ly---i~~--A~lE~~~~~d~e~Ar~ife~~L-k~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 461 RRLKKLVTPDIY---LEN--AYIEYHISKDTKTACKVLELGL-KY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHTGGGSCTHHH---HHH--HHHHHTTTSCCHHHHHHHHHHH-HH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHhcCCCChHHH---HHH--HHHHHHhCCCHHHHHHHHHHHH-HH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 874 11111122 111 1111111356999999999988 32 3335566778888888899999999999999986
Q ss_pred CCCC--ChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCC
Q 012365 391 GLPY--NVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPH 428 (465)
Q Consensus 391 g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 428 (465)
..++ ....|...+..-.+.|+.+.+.++.+++.+..|.
T Consensus 534 ~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 534 ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3211 3457888888888899999999999999876664
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.46 E-value=2.3e-11 Score=110.69 Aligned_cols=244 Identities=12% Similarity=0.019 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012365 46 TETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKD-FDSAYSLLDDLKEMNLMPTASMYNAIMA 124 (465)
Q Consensus 46 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~li~ 124 (465)
...|..+...+...|++++|.+.++++++.. +-+..+|+.+..++...|+ +++|+..|++..... +.+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4567778888889999999999999999876 5578899999999999997 999999999998876 567889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012365 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204 (465)
Q Consensus 125 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 204 (465)
++...|++++|+..|+++.+.. | -+...|..+..++...|++++|+.
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld--P-------------------------------~~~~a~~~lg~~~~~~g~~~eAl~ 221 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD--A-------------------------------KNYHAWQHRQWVIQEFKLWDNELQ 221 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC--T-------------------------------TCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC--c-------------------------------cCHHHHHHHHHHHHHcCChHHHHH
Confidence 9999999999999999987632 2 256777888888999999999999
Q ss_pred HHHH-hcCCCCChHHHHHHHHHHHHc-CCChhHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHccC--cHHHHHHHH
Q 012365 205 VVLD-AEIPVKSRSEVKSALVSALAS-HGRTSDA-----IIVYEEIKEAGCNLEPRAVIALIEHLNSEG--ELNRLIQLL 275 (465)
Q Consensus 205 ~~~~-~~~~~~~~~~~~~~l~~~~~~-~g~~~~a-----~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g--~~~~a~~~~ 275 (465)
.|++ +...+.... .|+.+..++.. .|..++| +..|++...... -+...|..+...+...| ++++|.+.+
T Consensus 222 ~~~~al~l~P~~~~-a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~ 299 (382)
T 2h6f_A 222 YVDQLLKEDVRNNS-VWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQL 299 (382)
T ss_dssp HHHHHHHHCTTCHH-HHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHH
T ss_pred HHHHHHHhCCCCHH-HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHH
Confidence 9998 444555444 58999999999 6666888 588888888662 24667888888888888 689999999
Q ss_pred HHHcCCCC-CccchhhHhhHhhhcC---------ChhHHHHHHHHH-HHcccchhHHHHHHHH
Q 012365 276 EEVHDPDY-WMDGCCRLILHCVRFK---------QLSSATDLLKQL-KDKFKDDEMAMEYHFS 327 (465)
Q Consensus 276 ~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~ 327 (465)
.++ +... .+..+..+...+.+.+ .+++|+++|+++ .+..+.....|.....
T Consensus 300 ~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 300 LDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGR 361 (382)
T ss_dssp HHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 998 3332 2334456666666653 358999999999 5533333333443333
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.45 E-value=1.2e-11 Score=114.62 Aligned_cols=302 Identities=14% Similarity=0.044 Sum_probs=179.4
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 012365 79 PNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPT----ASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTF 154 (465)
Q Consensus 79 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 154 (465)
.....+......+...|++++|...|++....+ +.+ ...|..+...+...|++++|...+++..+..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------- 77 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA-------- 77 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--------
Confidence 445556666667777777788877777776653 223 2466777777888888888888877764310
Q ss_pred HHHHHhhCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHh-c-----CCCCChHHHHHHHHHHH
Q 012365 155 SYLIHNCSNEEDIIKYYEQLKSAGGQ-ITKYVFMALINAYTTCGEFEKARQVVLDA-E-----IPVKSRSEVKSALVSAL 227 (465)
Q Consensus 155 ~~ll~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~-----~~~~~~~~~~~~l~~~~ 227 (465)
...+.. ....++..+...+...|++++|...+++. . ........++..+...|
T Consensus 78 --------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 137 (406)
T 3sf4_A 78 --------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVY 137 (406)
T ss_dssp --------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred --------------------HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 000000 01234555666667777777777766541 1 01111122466666777
Q ss_pred HcCCC--------------------hhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHcCCC
Q 012365 228 ASHGR--------------------TSDAIIVYEEIKEA----GCNLE-PRAVIALIEHLNSEGELNRLIQLLEEVHDPD 282 (465)
Q Consensus 228 ~~~g~--------------------~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 282 (465)
...|+ +++|.+.+.+.... +..|. ..++..+...+...|++++|...+++..+..
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 138 HAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 77777 77777777665432 11111 2345566667777777777777777664321
Q ss_pred CC-------ccchhhHhhHhhhcCChhHHHHHHHHHHHcccc--h---hHHHHHHHHHHHHhhhcCCCCchhhhHHhHHH
Q 012365 283 YW-------MDGCCRLILHCVRFKQLSSATDLLKQLKDKFKD--D---EMAMEYHFSEIFCQIATTDPPDVQIGLDLLQF 350 (465)
Q Consensus 283 ~~-------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~ 350 (465)
.. ...+..+...+...|++++|...+++....... + .......+..++.. .|++++|...+++
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~ 292 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL-----LQDYEKAIDYHLK 292 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHH-----hCcHHHHHHHHHH
Confidence 11 114455666677788888888888776652111 1 01112222222222 4888888888887
Q ss_pred HHhhcCCCCc----HHHHHHHHHHhHhhhhhhHHHHHHHHHHHc----CC-CCChhHHHHHHHHHHhcCChhh
Q 012365 351 IKDELGLPPS----RKCLDFLLGACVNARDLKRAHLIWKEYENA----GL-PYNVLSYLWMYKAFLASGNRKS 414 (465)
Q Consensus 351 m~~~~~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~l~~~~~~~g~~~~ 414 (465)
......-.++ ..++..+...+...|++++|...+++..+. +. +....++..+...|...|+...
T Consensus 293 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 7621111111 456778888899999999999999988754 21 2223477788888888887643
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.42 E-value=5e-12 Score=117.44 Aligned_cols=272 Identities=13% Similarity=0.041 Sum_probs=182.1
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC-CCCHHH
Q 012365 13 SYKKLITYSCDLLKVHVALDVVEQMVQGELVPST----ETINSILHACEESYEFNLVRRIYPMICHH----NL-KPNSET 83 (465)
Q Consensus 13 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~ 83 (465)
.+..+...+...|++++|+..|++..+.... +. ..+..+...+...|++++|.+.+++..+. +- +....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3444556677788888888888888775332 33 45667777777888888888888776642 11 223456
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHH
Q 012365 84 FRSMISLNVKIKDFDSAYSLLDDLKEM----N-LMPTASMYNAIMAGYFRKKD-----------------VQGALMVLKE 141 (465)
Q Consensus 84 ~~~li~~~~~~g~~~~a~~~~~~m~~~----~-~~~~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~ 141 (465)
+..+...|...|++++|...|++.... + .+....++..+...|...|+ +++|.+.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 777777788888888888887776533 1 01224466777777777787 6666666655
Q ss_pred HHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHh-cC-----CCC
Q 012365 142 MEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGG-QITKYVFMALINAYTTCGEFEKARQVVLDA-EI-----PVK 214 (465)
Q Consensus 142 m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~-----~~~ 214 (465)
..+. ..+.+. .....++..+...+...|++++|.+.+++. .. ...
T Consensus 209 al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 209 NLKL----------------------------MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp HHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHH----------------------------HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 4321 111111 112346777888899999999999999862 11 111
Q ss_pred ChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCC-----
Q 012365 215 SRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN-LE----PRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW----- 284 (465)
Q Consensus 215 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----- 284 (465)
....++..+...|...|++++|...+++....... .+ ..++..+...+...|++++|...+++.......
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 340 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI 340 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH
Confidence 11224788889999999999999999887654210 11 456777888899999999999998877543211
Q ss_pred --ccchhhHhhHhhhcCChhHHHHHHHHHHH
Q 012365 285 --MDGCCRLILHCVRFKQLSSATDLLKQLKD 313 (465)
Q Consensus 285 --~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 313 (465)
...+..+...+...|++++|...|++..+
T Consensus 341 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 341 GEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 22455677778888999999999888776
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.41 E-value=1.5e-11 Score=116.14 Aligned_cols=221 Identities=10% Similarity=-0.110 Sum_probs=149.9
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 012365 199 FEKARQVVLDAEIPVKSRSEVKSALVSALASHGRT-SDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEE 277 (465)
Q Consensus 199 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 277 (465)
++++...+++.....+.....+..+...+...|++ ++|++.|++..+... -+...+..+..+|...|++++|...|+.
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44445555443333333333466666666666666 666666666666541 1355666666666666777777776666
Q ss_pred HcCCCCCccchhhHhhHhhhc---------CChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCC--CCchhhhHH
Q 012365 278 VHDPDYWMDGCCRLILHCVRF---------KQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTD--PPDVQIGLD 346 (465)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~A~~ 346 (465)
..+..+....+..+...+... |++++|+..|++..+..+.+...+..+-..++..+.... .|++++|+.
T Consensus 163 al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~ 242 (474)
T 4abn_A 163 ALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS 242 (474)
T ss_dssp HHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 665554444445555555566 778888888887777544444444444333332211112 288999999
Q ss_pred hHHHHHhhcCCCC----cHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhcc
Q 012365 347 LLQFIKDELGLPP----SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422 (465)
Q Consensus 347 ~~~~m~~~~~~~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 422 (465)
.|++.. . +.| +...|..+..+|...|++++|.+.|++..+.. |.+...+..+..++...|++++|.+.+.++
T Consensus 243 ~~~~al-~--~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 243 AYAQAE-K--VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHH-H--HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHH-H--hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999998 3 345 67888999999999999999999999999873 667778999999999999999999988877
Q ss_pred CC
Q 012365 423 PK 424 (465)
Q Consensus 423 ~~ 424 (465)
..
T Consensus 319 ~~ 320 (474)
T 4abn_A 319 KP 320 (474)
T ss_dssp CH
T ss_pred cC
Confidence 53
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.41 E-value=3.3e-11 Score=108.28 Aligned_cols=274 Identities=14% Similarity=0.025 Sum_probs=168.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012365 83 TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPT----ASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158 (465)
Q Consensus 83 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 158 (465)
.+......+...|++++|...|++..+.+ +.+ ...+..+...+...|++++|.+.+++..+..
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------ 73 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA------------ 73 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh------------
Confidence 34445566777888888888888887653 223 3567788888888999999998888865310
Q ss_pred HhhCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHh-c----CCC-CChHHHHHHHHHHHHcCC
Q 012365 159 HNCSNEEDIIKYYEQLKSAGGQ-ITKYVFMALINAYTTCGEFEKARQVVLDA-E----IPV-KSRSEVKSALVSALASHG 231 (465)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~----~~~-~~~~~~~~~l~~~~~~~g 231 (465)
...+.. ....++..+...+...|++++|.+.+++. . ... .....++..+...+...|
T Consensus 74 ----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~ 137 (338)
T 3ro2_A 74 ----------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG 137 (338)
T ss_dssp ----------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC
Confidence 000000 12345666778888889999998888762 1 111 111224677778888888
Q ss_pred C--------------------hhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCC--
Q 012365 232 R--------------------TSDAIIVYEEIKEA----GCNL-EPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW-- 284 (465)
Q Consensus 232 ~--------------------~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-- 284 (465)
+ +++|.+.+.+.... +..| ....+..+...+...|++++|...+++..+....
T Consensus 138 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 8 77777777765432 1111 1223445555555566666665555544321000
Q ss_pred -----ccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhc---C
Q 012365 285 -----MDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDEL---G 356 (465)
Q Consensus 285 -----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~---~ 356 (465)
...+..+...+... |++++|...+++..... +
T Consensus 218 ~~~~~~~~~~~l~~~~~~~----------------------------------------g~~~~A~~~~~~al~~~~~~~ 257 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFL----------------------------------------GEFETASEYYKKTLLLARQLK 257 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHH----------------------------------------TCHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHHc----------------------------------------CCHHHHHHHHHHHHHHHHhhc
Confidence 00111222222222 66666666666655111 1
Q ss_pred CCC-cHHHHHHHHHHhHhhhhhhHHHHHHHHHHHc----CCC-CChhHHHHHHHHHHhcCChhhHHHHHhccCCC
Q 012365 357 LPP-SRKCLDFLLGACVNARDLKRAHLIWKEYENA----GLP-YNVLSYLWMYKAFLASGNRKSASKLLSKMPKD 425 (465)
Q Consensus 357 ~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 425 (465)
..+ ...++..+...+...|++++|...+++..+. +.+ ....++..+...|.+.|++++|...+++..+.
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 258 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 111 1456777888899999999999999998754 111 11347888999999999999999999987654
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.40 E-value=6.9e-12 Score=116.49 Aligned_cols=277 Identities=14% Similarity=0.014 Sum_probs=175.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012365 83 TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTA----SMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLI 158 (465)
Q Consensus 83 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 158 (465)
.+..+...+...|++++|...|++..+.+ +.+. ..|..+...|...|++++|.+.|++..+..
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------ 116 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA------------ 116 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------------
Confidence 44456667788899999999999888764 2333 467888888889999999999988875420
Q ss_pred HhhCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhc-C-----CCCChHHHHHHHHHHHHcCC
Q 012365 159 HNCSNEEDIIKYYEQLKSAGG-QITKYVFMALINAYTTCGEFEKARQVVLDAE-I-----PVKSRSEVKSALVSALASHG 231 (465)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~-----~~~~~~~~~~~l~~~~~~~g 231 (465)
...+. .....++..+...|...|++++|.+.+++.. . .......++..+...|...|
T Consensus 117 ----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 180 (411)
T 4a1s_A 117 ----------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG 180 (411)
T ss_dssp ----------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC
Confidence 00000 1123456667778888889888888887621 1 11222334777788888888
Q ss_pred C-----------------hhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCC-cc--
Q 012365 232 R-----------------TSDAIIVYEEIKEA----GCNL-EPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW-MD-- 286 (465)
Q Consensus 232 ~-----------------~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~-- 286 (465)
+ +++|++.+.+..+. +-.+ ...++..+...+...|++++|...+++..+.... .+
T Consensus 181 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 8 77777777765432 1111 1234555556666666666666666554331100 00
Q ss_pred ----chhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhc---CCC-
Q 012365 287 ----GCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDEL---GLP- 358 (465)
Q Consensus 287 ----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~---~~~- 358 (465)
.+..+...+... |++++|...+++..... +..
T Consensus 261 ~~~~~~~~la~~~~~~----------------------------------------g~~~~A~~~~~~al~~~~~~~~~~ 300 (411)
T 4a1s_A 261 AERRANSNLGNSHIFL----------------------------------------GQFEDAAEHYKRTLALAVELGERE 300 (411)
T ss_dssp HHHHHHHHHHHHHHTT----------------------------------------TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHC----------------------------------------cCHHHHHHHHHHHHHHHHHcCCHH
Confidence 122222223333 66666666665554111 111
Q ss_pred CcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHc----CC-CCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCC
Q 012365 359 PSRKCLDFLLGACVNARDLKRAHLIWKEYENA----GL-PYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPH 428 (465)
Q Consensus 359 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 428 (465)
....++..+...+...|++++|...+++..+. +. .....++..+...|.+.|++++|.+++++..+....
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 301 VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 12456778888999999999999999998764 11 112347888999999999999999999998765543
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=4.8e-11 Score=106.05 Aligned_cols=211 Identities=8% Similarity=-0.016 Sum_probs=126.7
Q ss_pred hHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCC-cc-chhhHhhHhhhcCChhHHHHHHH
Q 012365 234 SDAIIVYEEIKEA-GCNL-EPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW-MD-GCCRLILHCVRFKQLSSATDLLK 309 (465)
Q Consensus 234 ~~a~~~~~~m~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~a~~~~~ 309 (465)
++|..+|++.... . | +...|..+...+.+.|++++|..+|++..+..+. +. .+..++..+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLL--KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTT--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 6666666666652 2 3 3345556666666666666666666666554332 22 34455555556666777777776
Q ss_pred HHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHH
Q 012365 310 QLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYEN 389 (465)
Q Consensus 310 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 389 (465)
+..+..+.....+... .... ....|++++|..+|++.. +.. +-+...|..++..+.+.|++++|+.+|++..+
T Consensus 159 ~a~~~~p~~~~~~~~~---a~~~--~~~~~~~~~A~~~~~~al-~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 231 (308)
T 2ond_A 159 KAREDARTRHHVYVTA---ALME--YYCSKDKSVAFKIFELGL-KKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHTSTTCCTHHHHHH---HHHH--HHTSCCHHHHHHHHHHHH-HHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHH---HHHH--HHHcCCHHHHHHHHHHHH-HhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6665332222222111 1110 001378888888888877 221 12566777888888888899999999998888
Q ss_pred cC-CCC--ChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCChhHH--HHHHHhhccccchhhhcCCCCCcchhh
Q 012365 390 AG-LPY--NVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFV--IQACKQTYTIPSLQKERGFEKDRDTLL 459 (465)
Q Consensus 390 ~g-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~pd~~t~~ 459 (465)
.. ++| ....|..++..+.+.|+.++|..+++++.+..|..... +..+. .+.+-.+..|+....+
T Consensus 232 ~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~~~~~~------~r~~~l~~~P~~~~~l 300 (308)
T 2ond_A 232 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLV------DRYKFMDLYPCSASEL 300 (308)
T ss_dssp SSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCHHHHHH------TTTCBTTBCSSCHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccchHHHHH------HHHHhcccCCCCHHHH
Confidence 52 455 35578888888888899999998888887766632111 12221 2233355677766655
No 64
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.38 E-value=3.9e-11 Score=111.07 Aligned_cols=277 Identities=13% Similarity=0.035 Sum_probs=196.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012365 113 MPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPD-SQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALIN 191 (465)
Q Consensus 113 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (465)
.+....+......+...|++++|...|++..+.+ |+ ... -..++..+..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~----------------------------~~~~~~~l~~ 55 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKT----------------------------LSAIYSQLGN 55 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHH----------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHH----------------------------HHHHHHHHHH
Confidence 4556677778888999999999999999987642 22 110 1245667778
Q ss_pred HHHhcCCHHHHHHHHHHh-----cCC-CCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHH
Q 012365 192 AYTTCGEFEKARQVVLDA-----EIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC-NLE----PRAVIALIE 260 (465)
Q Consensus 192 ~~~~~g~~~~a~~~~~~~-----~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~ 260 (465)
.+...|++++|...+++. ... ......++..+...|...|++++|...+.+..+... .++ ..++..+..
T Consensus 56 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 135 (406)
T 3sf4_A 56 AYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 135 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 889999999999998762 111 122233578889999999999999999998765420 012 346778888
Q ss_pred HHHccCc--------------------HHHHHHHHHHHcCC----CCC---ccchhhHhhHhhhcCChhHHHHHHHHHHH
Q 012365 261 HLNSEGE--------------------LNRLIQLLEEVHDP----DYW---MDGCCRLILHCVRFKQLSSATDLLKQLKD 313 (465)
Q Consensus 261 ~~~~~g~--------------------~~~a~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 313 (465)
.+...|+ +++|...+++..+. +.. ...+..+...+...|++++|...+++...
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8999999 99999988876432 111 22456777788899999999999998876
Q ss_pred ccc--ch---hHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCc----HHHHHHHHHHhHhhhhhhHHHHHH
Q 012365 314 KFK--DD---EMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS----RKCLDFLLGACVNARDLKRAHLIW 384 (465)
Q Consensus 314 ~~~--~~---~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~ 384 (465)
... ++ .......+..++.. .|++++|...+++......-.++ ..++..+...+...|++++|...+
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 290 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIF-----LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYH 290 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 311 11 11122222222222 49999999999987721111111 457778888999999999999999
Q ss_pred HHHHHc----CCCC-ChhHHHHHHHHHHhcCChhhHHHHHhccCC
Q 012365 385 KEYENA----GLPY-NVLSYLWMYKAFLASGNRKSASKLLSKMPK 424 (465)
Q Consensus 385 ~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 424 (465)
++..+. +.++ ...++..+...|...|++++|.+.+++..+
T Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 291 LKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 998764 1111 145788899999999999999999999775
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.37 E-value=6e-10 Score=98.94 Aligned_cols=234 Identities=12% Similarity=0.105 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHhcc----cCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHH
Q 012365 11 SASYKKLITYSCDL----LKV----HVALDVVEQMVQGELVPSTETINSILHACEE-------SYEF-------NLVRRI 68 (465)
Q Consensus 11 ~~~y~~li~~~~~~----g~~----~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-------~~~~-------~~a~~~ 68 (465)
...|...+..-.+. ++. ++|..+|++..+.. +-+...|..+...+.. .|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 45677777765443 243 78999999998853 3477888888777653 5775 899999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 012365 69 YPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPT-AS-MYNAIMAGYFRKKDVQGALMVLKEMEQAN 146 (465)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 146 (465)
|++..+.-.+-+...|..+...+.+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+..
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 999998322456779999999999999999999999999875 454 43 89999999999999999999999988643
Q ss_pred CCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHh-cCCCCChHHHHHHHH
Q 012365 147 VKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINA-YTTCGEFEKARQVVLDA-EIPVKSRSEVKSALV 224 (465)
Q Consensus 147 ~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~l~ 224 (465)
- ++...|. ..... +...|+.++|.++|++. ...+.. ...|..++
T Consensus 165 p-~~~~~~~--------------------------------~~a~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~ 210 (308)
T 2ond_A 165 R-TRHHVYV--------------------------------TAALMEYYCSKDKSVAFKIFELGLKKYGDI-PEYVLAYI 210 (308)
T ss_dssp T-CCTHHHH--------------------------------HHHHHHHHTSCCHHHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred C-CCHHHHH--------------------------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHH
Confidence 1 1111111 11111 11246777777777652 222222 23466677
Q ss_pred HHHHcCCChhHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHccCcHHHHHHHHHHHcCC
Q 012365 225 SALASHGRTSDAIIVYEEIKEAG-CNL--EPRAVIALIEHLNSEGELNRLIQLLEEVHDP 281 (465)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~m~~~~-~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 281 (465)
..+.+.|++++|..+|++..... +.| ....|..++....+.|+.+.|..+++.+.+.
T Consensus 211 ~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 211 DYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777776652 334 2445666666666677777777777766543
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.36 E-value=2.4e-11 Score=109.19 Aligned_cols=273 Identities=12% Similarity=0.017 Sum_probs=183.0
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC-CCHH
Q 012365 12 ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPS----TETINSILHACEESYEFNLVRRIYPMICHH----NLK-PNSE 82 (465)
Q Consensus 12 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~ 82 (465)
..+......+...|++++|+..|++..+.... + ...+..+...+...|++++|.+.+++..+. +.. ....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 34555666778899999999999999876432 3 356778888889999999999998887642 211 2255
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHH
Q 012365 83 TFRSMISLNVKIKDFDSAYSLLDDLKEMNL-MPT----ASMYNAIMAGYFRKKD--------------------VQGALM 137 (465)
Q Consensus 83 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~--------------------~~~a~~ 137 (465)
++..+...+...|++++|...+++.....- .++ ..++..+...+...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 778888889999999999999888654210 122 3367778888888888 777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhc-C----
Q 012365 138 VLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGG-QITKYVFMALINAYTTCGEFEKARQVVLDAE-I---- 211 (465)
Q Consensus 138 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~---- 211 (465)
.+++.... ....+. .....++..+...+...|++++|.+.+++.. .
T Consensus 165 ~~~~a~~~----------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 165 LYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHHHHHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----------------------------HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 76664321 001110 1123456677788888999999998887621 1
Q ss_pred -CCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCC-
Q 012365 212 -PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCN-LE----PRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW- 284 (465)
Q Consensus 212 -~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~- 284 (465)
.......++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+....
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 11111224777888888999999999988887653210 11 445667777888888888888888776542111
Q ss_pred ------ccchhhHhhHhhhcCChhHHHHHHHHHHH
Q 012365 285 ------MDGCCRLILHCVRFKQLSSATDLLKQLKD 313 (465)
Q Consensus 285 ------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 313 (465)
...+..+...+...|++++|...+++..+
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 12344555666677777777777776655
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.36 E-value=2.8e-10 Score=92.68 Aligned_cols=164 Identities=13% Similarity=0.060 Sum_probs=135.7
Q ss_pred CCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 012365 9 PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88 (465)
Q Consensus 9 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 88 (465)
-++..|..+-..|.+.|++++|++.|++..+..+. +..++..+..++...|++++|...+....... +.+...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 36778999999999999999999999999886543 78888889999999999999999999988765 45678888888
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHH
Q 012365 89 SLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDII 168 (465)
Q Consensus 89 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 168 (465)
..+...++++.|...+++..... +.+...+..+...+.+.|++++|++.|++..+. .|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p------------------- 138 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KP------------------- 138 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT-------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cc-------------------
Confidence 88999999999999999887765 567888899999999999999999999887753 12
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012365 169 KYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208 (465)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 208 (465)
.+..++..+..+|.+.|++++|.+.|++
T Consensus 139 ------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 166 (184)
T 3vtx_A 139 ------------GFIRAYQSIGLAYEGKGLRDEAVKYFKK 166 (184)
T ss_dssp ------------TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------hhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2455667777778888888888888876
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.36 E-value=2e-10 Score=93.53 Aligned_cols=167 Identities=17% Similarity=0.157 Sum_probs=116.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012365 45 STETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124 (465)
Q Consensus 45 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 124 (465)
+...|..+...+...|++++|.+.|++..+.. +-+..++..+..+|.+.|++++|...++...... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 55677777777777778888877777777664 4467777777777777777777777777776554 445666666677
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012365 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204 (465)
Q Consensus 125 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 204 (465)
.+...++++.|.+.+.+..+. . +.+...+..+...+.+.|++++|++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~-------------------------------~~~~~~~~~lg~~~~~~g~~~~A~~ 128 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--N-------------------------------TVYADAYYKLGLVYDSMGEHDKAIE 128 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--C-------------------------------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--C-------------------------------ccchHHHHHHHHHHHHhCCchhHHH
Confidence 777777777777777665542 1 2244556666777788888888888
Q ss_pred HHHH-hcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcC
Q 012365 205 VVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAG 247 (465)
Q Consensus 205 ~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 247 (465)
.|++ ....+... .+|..+...|...|++++|++.|++..+..
T Consensus 129 ~~~~~l~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 129 AYEKTISIKPGFI-RAYQSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcchhh-hHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 8876 33333333 347777888888888888888888877643
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.33 E-value=7.6e-11 Score=111.25 Aligned_cols=212 Identities=12% Similarity=0.066 Sum_probs=145.1
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012365 61 EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDF-DSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVL 139 (465)
Q Consensus 61 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 139 (465)
.++++.+.++...... +.+...+..+...+...|++ ++|...|++..+.. +.+...|..+...|...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3556666666555443 34666777777777777777 77777777766554 345667777777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHhhCCh---------hHHH---HHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CCH
Q 012365 140 KEMEQANVKPDSQTFSYLIHNCSNE---------EDII---KYYEQLKSAGGQITKYVFMALINAYTTC--------GEF 199 (465)
Q Consensus 140 ~~m~~~~~~p~~~~~~~ll~~~~~~---------~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~ 199 (465)
++..+. .|+...+..+-..+... ++.. ..++...+.. +-+...+..+..+|... |++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 777654 35555555555555444 4433 3444444443 33577888888888888 999
Q ss_pred HHHHHHHHHh-cCCCC--ChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 012365 200 EKARQVVLDA-EIPVK--SRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLE 276 (465)
Q Consensus 200 ~~a~~~~~~~-~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 276 (465)
++|.+.|++. ...+. .....|..+...|...|++++|.+.|++..+... -+...+..+..++...|++++|.+.+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999883 33331 3444588999999999999999999999988762 246677788888888888888877554
Q ss_pred HH
Q 012365 277 EV 278 (465)
Q Consensus 277 ~~ 278 (465)
.+
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 43
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.30 E-value=1.4e-10 Score=106.48 Aligned_cols=229 Identities=10% Similarity=-0.079 Sum_probs=159.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcC-----CCCC-hHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCC-CCC-----HHHHH
Q 012365 189 LINAYTTCGEFEKARQVVLDAEI-----PVKS-RSEVKSALVSALASHGRTSDAIIVYEEIKEAGC-NLE-----PRAVI 256 (465)
Q Consensus 189 l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~-----~~~~~ 256 (465)
....+...|++++|.+.|++... +..+ ...++..+...|...|++++|...+.+..+.-. .++ ..++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 45667889999999999987322 1111 233588889999999999999999998765411 111 34677
Q ss_pred HHHHHHHccCcHHHHHHHHHHHcCCCCC-------ccchhhHhhHhhhcCChhHHHHHHHHHHH-----cccchhHHHHH
Q 012365 257 ALIEHLNSEGELNRLIQLLEEVHDPDYW-------MDGCCRLILHCVRFKQLSSATDLLKQLKD-----KFKDDEMAMEY 324 (465)
Q Consensus 257 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 324 (465)
.+...|...|++++|...+++..+.... ...+..+...|...|++++|...|++... ...|.......
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7888899999999999999877643211 12566788888899999999999998877 23233333333
Q ss_pred HHHHHHHhhhcCCCCchhhhHHhHHHHHhhc---CCCCcHHHHHHHHHHhHhhhh---hhHHHHHHHHHHHcCCCCChhH
Q 012365 325 HFSEIFCQIATTDPPDVQIGLDLLQFIKDEL---GLPPSRKCLDFLLGACVNARD---LKRAHLIWKEYENAGLPYNVLS 398 (465)
Q Consensus 325 ~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~---~~~p~~~~~~~ll~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~ 398 (465)
.+...+.. .|++++|...+++..... +-......+..+...+...|+ +++|..++++... .+.....
T Consensus 269 ~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~~~~ 341 (383)
T 3ulq_A 269 LITQIHYK-----LGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADLEDF 341 (383)
T ss_dssp HHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHHHHH
T ss_pred HHHHHHHH-----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHHHHH
Confidence 34433333 499999999998877211 111122335667777888888 7777777766521 2333447
Q ss_pred HHHHHHHHHhcCChhhHHHHHhccCC
Q 012365 399 YLWMYKAFLASGNRKSASKLLSKMPK 424 (465)
Q Consensus 399 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 424 (465)
+..+...|...|++++|..++++..+
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88899999999999999999987653
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.29 E-value=1.2e-09 Score=100.21 Aligned_cols=301 Identities=9% Similarity=0.023 Sum_probs=184.8
Q ss_pred hcccCHHHHHHHHHHHHhC--CCCCCH--HHHHHHHHH--HHhcCCHHHHH-----------HHHHHHhhCCCCCCHHH-
Q 012365 22 CDLLKVHVALDVVEQMVQG--ELVPST--ETINSILHA--CEESYEFNLVR-----------RIYPMICHHNLKPNSET- 83 (465)
Q Consensus 22 ~~~g~~~~A~~~~~~m~~~--~~~p~~--~~~~~ll~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~- 83 (465)
.+.+++++|..+++++.+. .+..|. ..|-.++.. ..-.++++.+. +.++.+.... .+...
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~~ 100 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTGL 100 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchhH
Confidence 4589999999999998653 232343 333444433 11223444444 6666665432 11121
Q ss_pred -----HHHHHHHHhccCCHHHHHHHHHHHHHcC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 012365 84 -----FRSMISLNVKIKDFDSAYSLLDDLKEMN-LMP----TASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQT 153 (465)
Q Consensus 84 -----~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 153 (465)
+......+...|++++|...|++....- -.+ ...+|..+...|...|++++|.+.+++..+.-
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------- 173 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIY------- 173 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-------
Confidence 1225556778899999999999886531 012 24678888999999999999999998876420
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHh-c----CC-CCChHHHHHHHHH
Q 012365 154 FSYLIHNCSNEEDIIKYYEQLKSAGG--QITKYVFMALINAYTTCGEFEKARQVVLDA-E----IP-VKSRSEVKSALVS 225 (465)
Q Consensus 154 ~~~ll~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~----~~-~~~~~~~~~~l~~ 225 (465)
.+.+. .....+++.+...|...|++++|.+.|++. . .+ ......++..+..
T Consensus 174 ---------------------~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 232 (383)
T 3ulq_A 174 ---------------------KEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGL 232 (383)
T ss_dssp ---------------------HTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------------HhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 00000 012346677788899999999999988762 1 11 1112224778888
Q ss_pred HHHcCCChhHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCC
Q 012365 226 ALASHGRTSDAIIVYEEIKEA----GC-NLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQ 300 (465)
Q Consensus 226 ~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (465)
.|...|++++|.+.+++..+. +. +....++..+...+.+.|++++|...+++..+.
T Consensus 233 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------------- 293 (383)
T 3ulq_A 233 CKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY------------------- 293 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------------------
Confidence 899999999999998887662 22 223556667777777777777777776655321
Q ss_pred hhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCc---hhhhHHhHHHHHhhcCCCC-cHHHHHHHHHHhHhhhh
Q 012365 301 LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPD---VQIGLDLLQFIKDELGLPP-SRKCLDFLLGACVNARD 376 (465)
Q Consensus 301 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~ 376 (465)
.... ..+........+..++.. .|+ +++|+.++++.. ..| ....+..+...|...|+
T Consensus 294 -------~~~~---~~~~~~~~~~~l~~~~~~-----~~~~~~~~~al~~~~~~~----~~~~~~~~~~~la~~y~~~g~ 354 (383)
T 3ulq_A 294 -------SQKA---GDVIYLSEFEFLKSLYLS-----GPDEEAIQGFFDFLESKM----LYADLEDFAIDVAKYYHERKN 354 (383)
T ss_dssp -------HHHH---TCHHHHHHHHHHHHHHTS-----SCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHTTC
T ss_pred -------HHHc---CCHHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHCc----CHHHHHHHHHHHHHHHHHCCC
Confidence 0000 011111111112222221 355 666777766553 333 33466778888999999
Q ss_pred hhHHHHHHHHHHHc
Q 012365 377 LKRAHLIWKEYENA 390 (465)
Q Consensus 377 ~~~A~~~~~~m~~~ 390 (465)
+++|...+++..+.
T Consensus 355 ~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 355 FQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988753
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.29 E-value=3.9e-11 Score=106.61 Aligned_cols=210 Identities=13% Similarity=0.067 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhcC--------CCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHc------CC
Q 012365 183 KYVFMALINAYTTCGEFEKARQVVLDAEI--------PVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA------GC 248 (465)
Q Consensus 183 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------~~ 248 (465)
..++..+...+...|++++|..+|++... .......++..+...|...|++++|...+++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 35566666667777777777777765211 22222334666666667777777777776666543 11
Q ss_pred CC-CHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHH
Q 012365 249 NL-EPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFS 327 (465)
Q Consensus 249 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 327 (465)
.| ...++..+...+...|++++|...+++..+. .........+........+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------------------------~~~~~~~~~~~~~~~~~~la 160 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI--------------------------REKVLGKDHPDVAKQLNNLA 160 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------------------------HHHHHCTTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--------------------------HHHhcCCCChHHHHHHHHHH
Confidence 11 1334445555555555555555555544321 00000000111111222222
Q ss_pred HHHHhhhcCCCCchhhhHHhHHHHHhhc------CCCC-cHHHHHHHHHHhHhhhhhhHHHHHHHHHHHc----------
Q 012365 328 EIFCQIATTDPPDVQIGLDLLQFIKDEL------GLPP-SRKCLDFLLGACVNARDLKRAHLIWKEYENA---------- 390 (465)
Q Consensus 328 ~~~~~~~~~~~~~~~~A~~~~~~m~~~~------~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~---------- 390 (465)
.++.. .|++++|+..+++.. .. +..| ...++..+...+...|++++|...++++.+.
T Consensus 161 ~~~~~-----~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 161 LLCQN-----QGKYEEVEYYYQRAL-EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHT-----TTCHHHHHHHHHHHH-HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHH-----cCCHHHHHHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 22222 477788887777776 32 2233 3346777888888889999999888888753
Q ss_pred --------------------------------------CCCCChhHHHHHHHHHHhcCChhhHHHHHhccCC
Q 012365 391 --------------------------------------GLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424 (465)
Q Consensus 391 --------------------------------------g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 424 (465)
..+.+..++..+..+|.+.|++++|.+++++.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1233455788888999999999999999987654
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.27 E-value=1.3e-10 Score=103.25 Aligned_cols=245 Identities=10% Similarity=0.041 Sum_probs=163.7
Q ss_pred CHHHHHHHHHHHhcccCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------C
Q 012365 10 SSASYKKLITYSCDLLKVHVALDVVEQMVQG-------ELVPSTETINSILHACEESYEFNLVRRIYPMICHH------N 76 (465)
Q Consensus 10 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 76 (465)
+..++..+...+...|++++|+.+|+++.+. ..+.....+..+...+...|++++|...++...+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4678889999999999999999999998763 23334567888888999999999999999998764 2
Q ss_pred C-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 012365 77 L-KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEM------NL-MPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148 (465)
Q Consensus 77 ~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 148 (465)
- +....++..+...|...|++++|...|++..+. +- +.....+..+...+...|++++|.+.|++..+.-
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-- 183 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY-- 183 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH--
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--
Confidence 1 234568888999999999999999999988754 21 2235668888899999999999999999886420
Q ss_pred CCHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC----------CCCChH-
Q 012365 149 PDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEI----------PVKSRS- 217 (465)
Q Consensus 149 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------~~~~~~- 217 (465)
+.......+....++..+...+...|++++|.+.+++... .+....
T Consensus 184 -----------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 240 (311)
T 3nf1_A 184 -----------------------QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPI 240 (311)
T ss_dssp -----------------------HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCH
T ss_pred -----------------------HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Confidence 0000000011234566777888889999999888876211 111110
Q ss_pred ----HHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcC
Q 012365 218 ----EVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHD 280 (465)
Q Consensus 218 ----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 280 (465)
..+..+...+...+.+.++...+....... ..+..++..+..+|.+.|++++|...+++..+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 012333344445566667777777666543 12456677888899999999999999887643
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.24 E-value=1.4e-09 Score=88.32 Aligned_cols=162 Identities=13% Similarity=0.030 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 012365 11 SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL 90 (465)
Q Consensus 11 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 90 (465)
...|..+...+...|++++|++.|+.+.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3567777888888999999999998887653 3367788888888889999999999999888764 4578888888888
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHH
Q 012365 91 NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY 170 (465)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 170 (465)
+...|++++|...+++..... +.+...+..+...+...|++++|.+.+++..+..
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------------------ 140 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR------------------------ 140 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC------------------------
Confidence 999999999999999887764 5677888888888999999999999988876531
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012365 171 YEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208 (465)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 208 (465)
+.+..++..+...+...|++++|.+.+++
T Consensus 141 ---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 141 ---------PNEGKVHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp ---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---------ccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 12345566677777778888888877765
No 75
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.23 E-value=2.8e-07 Score=89.62 Aligned_cols=388 Identities=8% Similarity=0.015 Sum_probs=249.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCC---HHHHHHH
Q 012365 27 VHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKD---FDSAYSL 103 (465)
Q Consensus 27 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~ 103 (465)
..+-+..|++.+..+. -|..+|..++..+.+.+.++.+..+|+.+...- +.+...|...+..-.+.++ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 3344555666666554 499999999999999999999999999999874 7788899999999888898 9999999
Q ss_pred HHHHHHcC-CCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHH-CCC-CCC-HHHHHHHHHhhC---------
Q 012365 104 LDDLKEMN-LMPTASMYNAIMAGYFRKKDV--------QGALMVLKEMEQ-ANV-KPD-SQTFSYLIHNCS--------- 162 (465)
Q Consensus 104 ~~~m~~~~-~~~~~~~~~~li~~~~~~g~~--------~~a~~~~~~m~~-~~~-~p~-~~~~~~ll~~~~--------- 162 (465)
|++..... .+|++..|...+....+.++. +.+.++|+.... .|. .|+ ...|...+.-..
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 99988653 248999999888766665543 334477777653 566 564 455555554321
Q ss_pred ---ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHh-------cCC-CC----
Q 012365 163 ---NEEDIIKYYEQLKSAGGQITKYVFMALINAYTT-------------CGEFEKARQVVLDA-------EIP-VK---- 214 (465)
Q Consensus 163 ---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~a~~~~~~~-------~~~-~~---- 214 (465)
+.+.+..+++............+|......-.. ..+++.|...+.+. ... +.
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 123345567766643222122333322111111 12234445555431 100 00
Q ss_pred ------C--------hHHHHHHHHHHHHcCCC-------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHH-
Q 012365 215 ------S--------RSEVKSALVSALASHGR-------TSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLI- 272 (465)
Q Consensus 215 ------~--------~~~~~~~l~~~~~~~g~-------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~- 272 (465)
| ....|...+.---..+. .+.+..+|++..... .-++..|.....-+...|+.++|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 0 01235555554433331 234566788877764 236777777778788889988996
Q ss_pred HHHHHHcCCCCCc-cchhhHhhHhhhcCChhHHHHHHHHHHHcc----------cch------------hHHHHHHHHHH
Q 012365 273 QLLEEVHDPDYWM-DGCCRLILHCVRFKQLSSATDLLKQLKDKF----------KDD------------EMAMEYHFSEI 329 (465)
Q Consensus 273 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----------~~~------------~~~~~~~l~~~ 329 (465)
.+++......+.. ..+...+....+.|+++.|.++|+++.... .|. ...|...+. +
T Consensus 365 ~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~-~ 443 (679)
T 4e6h_A 365 KYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMN-T 443 (679)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHH-H
Confidence 9999887543321 123345555668899999999999988732 121 112322222 2
Q ss_pred HHhhhcCCCCchhhhHHhHHHHHhhc--CCCCcHHHHHHHHHHhHhh-hhhhHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 012365 330 FCQIATTDPPDVQIGLDLLQFIKDEL--GLPPSRKCLDFLLGACVNA-RDLKRAHLIWKEYENAGLPYNVLSYLWMYKAF 406 (465)
Q Consensus 330 ~~~~~~~~~~~~~~A~~~~~~m~~~~--~~~p~~~~~~~ll~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 406 (465)
... .|+.+.|..+|.... +. ...+......+.+. .+. ++.+.|..+|+...+. ++.+...|...++..
T Consensus 444 erR-----~~~l~~AR~vf~~A~-~~~~~~~~~lyi~~A~lE--~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe 514 (679)
T 4e6h_A 444 MKR-----IQGLAASRKIFGKCR-RLKKLVTPDIYLENAYIE--YHISKDTKTACKVLELGLKY-FATDGEYINKYLDFL 514 (679)
T ss_dssp HHH-----HHCHHHHHHHHHHHH-HTGGGSCTHHHHHHHHHH--HTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHH-----cCCHHHHHHHHHHHH-HhcCCCChHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence 222 378999999999998 43 22233333333333 233 5599999999999987 677788888999988
Q ss_pred HhcCChhhHHHHHhccCCCCC
Q 012365 407 LASGNRKSASKLLSKMPKDDP 427 (465)
Q Consensus 407 ~~~g~~~~A~~~~~~m~~~~~ 427 (465)
...|+.+.|..+|++.....+
T Consensus 515 ~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 515 IYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHTCHHHHHHHHHHHTTTSS
T ss_pred HhCCCHHHHHHHHHHHHHhcC
Confidence 899999999999999998776
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.22 E-value=1.5e-09 Score=88.09 Aligned_cols=165 Identities=15% Similarity=0.090 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012365 47 ETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGY 126 (465)
Q Consensus 47 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 126 (465)
..+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345556666777777777777777776553 4466777777777777777777777777776653 44566777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012365 127 FRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVV 206 (465)
Q Consensus 127 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 206 (465)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~---------------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~ 133 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN---------------------------------PINFNVRFRLGVALDNLGRFDEAIDSF 133 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC---------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC---------------------------------cHhHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 77777777777777665421 113344555556666666666666666
Q ss_pred HHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHc
Q 012365 207 LDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA 246 (465)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 246 (465)
++.....+....++..+...+...|++++|...+++..+.
T Consensus 134 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6521111222233556666666666666666666665543
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.19 E-value=3e-09 Score=97.45 Aligned_cols=33 Identities=21% Similarity=0.074 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHHHH--hcccCHHHHHHHHHHHHh
Q 012365 7 ITPSSASYKKLITYS--CDLLKVHVALDVVEQMVQ 39 (465)
Q Consensus 7 ~~p~~~~y~~li~~~--~~~g~~~~A~~~~~~m~~ 39 (465)
+.|+..+=+.|-..| .+.+++++|..+++++.+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~ 40 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQ 40 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 345556666666666 667777777777777654
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.18 E-value=7.8e-08 Score=87.78 Aligned_cols=232 Identities=8% Similarity=0.024 Sum_probs=145.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHH
Q 012365 54 HACEESYEFNLVRRIYPMICHHNLKPNSE----TFRSMISLNVKIKDFDSAYSLLDDLKEMNL-MPT----ASMYNAIMA 124 (465)
Q Consensus 54 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~ 124 (465)
..+...|++++|...+++.....-..+.. +++.+...+...|++++|...+++.....- .++ ..++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34556788888888888876654222222 455666777788888888888887653210 112 233566778
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCCC--C-CHHHHHHHHHHHHhcCCHHH
Q 012365 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQ--I-TKYVFMALINAYTTCGEFEK 201 (465)
Q Consensus 125 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~ 201 (465)
.+...|++++|...+++..+. ..+.+.. | ....+..+...+...|++++
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 153 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQL----------------------------INEQHLEQLPMHEFLVRIRAQLLWAWARLDE 153 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH----------------------------HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH----------------------------HHHhccccCcHHHHHHHHHHHHHHHhcCHHH
Confidence 888999999999999887642 1111111 1 23455667788899999999
Q ss_pred HHHHHHHh-cCC----CCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHccCcHHH
Q 012365 202 ARQVVLDA-EIP----VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLE--PRAVI----ALIEHLNSEGELNR 270 (465)
Q Consensus 202 a~~~~~~~-~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~----~ll~~~~~~g~~~~ 270 (465)
|...+++. ... +.....++..+...+...|++++|...+++.......++ ..... .....+...|++++
T Consensus 154 A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 233 (373)
T 1hz4_A 154 AEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAA 233 (373)
T ss_dssp HHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHH
Confidence 99999872 111 111233577788889999999999999998875421111 12111 23344778999999
Q ss_pred HHHHHHHHcCCCCCcc-----chhhHhhHhhhcCChhHHHHHHHHHHH
Q 012365 271 LIQLLEEVHDPDYWMD-----GCCRLILHCVRFKQLSSATDLLKQLKD 313 (465)
Q Consensus 271 a~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~a~~~~~~~~~ 313 (465)
|...+++......... .+..+...+...|++++|...+++...
T Consensus 234 A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 234 AANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999998876442211 112333444555666666666555443
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.17 E-value=4.6e-09 Score=96.18 Aligned_cols=229 Identities=11% Similarity=0.033 Sum_probs=157.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcCC----CC--ChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcC--C---CC-CHHHHH
Q 012365 189 LINAYTTCGEFEKARQVVLDAEIP----VK--SRSEVKSALVSALASHGRTSDAIIVYEEIKEAG--C---NL-EPRAVI 256 (465)
Q Consensus 189 l~~~~~~~g~~~~a~~~~~~~~~~----~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~---~p-~~~~~~ 256 (465)
....+...|++++|...|++.... +. ....++..+...|...|+++.|...+.+..+.. . .+ ...++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 345667899999999999873211 11 122357888999999999999999999876531 1 11 144677
Q ss_pred HHHHHHHccCcHHHHHHHHHHHcCC----CC---CccchhhHhhHhhhcCChhHHHHHHHHHHHc----ccchhHHHHHH
Q 012365 257 ALIEHLNSEGELNRLIQLLEEVHDP----DY---WMDGCCRLILHCVRFKQLSSATDLLKQLKDK----FKDDEMAMEYH 325 (465)
Q Consensus 257 ~ll~~~~~~g~~~~a~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ 325 (465)
.+..+|...|++++|...+++..+. +. ....+..+...|...|++++|+..|++.... ..|........
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 8888999999999999999877542 11 1224567778888999999999999988771 22332333333
Q ss_pred HHHHHHhhhcCCCCchhhhHHhHHHHHhhcCC--CC-cHHHHHHHHHHhHhhhh---hhHHHHHHHHHHHcCCCCChhHH
Q 012365 326 FSEIFCQIATTDPPDVQIGLDLLQFIKDELGL--PP-SRKCLDFLLGACVNARD---LKRAHLIWKEYENAGLPYNVLSY 399 (465)
Q Consensus 326 l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~--~p-~~~~~~~ll~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~ 399 (465)
+...+.. .|++++|...+++......- .| ....+..+...+...|+ +.+|..++++.. ..+.....+
T Consensus 267 la~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~ 339 (378)
T 3q15_A 267 LSWTLCK-----AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACA 339 (378)
T ss_dssp HHHHHHH-----TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHH-----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHH
Confidence 3333333 49999999999998832221 12 23345556666767777 777777776621 122333467
Q ss_pred HHHHHHHHhcCChhhHHHHHhccCC
Q 012365 400 LWMYKAFLASGNRKSASKLLSKMPK 424 (465)
Q Consensus 400 ~~l~~~~~~~g~~~~A~~~~~~m~~ 424 (465)
..+...|...|++++|...+++..+
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7889999999999999999988754
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.17 E-value=1.3e-08 Score=93.00 Aligned_cols=270 Identities=10% Similarity=-0.059 Sum_probs=165.3
Q ss_pred HHHHHHhcccCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCH----HHHHH
Q 012365 16 KLITYSCDLLKVHVALDVVEQMVQGELVPSTE----TINSILHACEESYEFNLVRRIYPMICHHNL-KPNS----ETFRS 86 (465)
Q Consensus 16 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~ 86 (465)
.....+...|++++|...+++........+.. .++.+...+...|++++|.+.+++..+..- ..+. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445667899999999999988764333332 455666778889999999999998775210 1122 34667
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012365 87 MISLNVKIKDFDSAYSLLDDLKEM----NLM--P-TASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159 (465)
Q Consensus 87 li~~~~~~g~~~~a~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 159 (465)
+...+...|++++|...+++.... +.+ | ....+..+...+...|++++|...+++..+..-...
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------- 169 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ--------- 169 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC---------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC---------
Confidence 778889999999999999887543 222 2 234567788889999999999999998875321110
Q ss_pred hhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhc---CCCCChHHHHH----HHHHHHHcCCC
Q 012365 160 NCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAE---IPVKSRSEVKS----ALVSALASHGR 232 (465)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~~~----~l~~~~~~~g~ 232 (465)
......++..+...+...|++++|...+++.. ........... ..+..+...|+
T Consensus 170 -------------------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 230 (373)
T 1hz4_A 170 -------------------PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD 230 (373)
T ss_dssp -------------------GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred -------------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCC
Confidence 00112344555666677777777777776521 11111111111 22334567777
Q ss_pred hhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCcHHHHHHHHHHHcCC----CCC---ccchhhHhhHhhhcCChh
Q 012365 233 TSDAIIVYEEIKEAGCNL---EPRAVIALIEHLNSEGELNRLIQLLEEVHDP----DYW---MDGCCRLILHCVRFKQLS 302 (465)
Q Consensus 233 ~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~ 302 (465)
+++|...+.+.......+ ....+..+...+...|++++|...++..... +.. ...+..+...+...|+.+
T Consensus 231 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 310 (373)
T 1hz4_A 231 KAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS 310 (373)
T ss_dssp HHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHH
Confidence 777777776665433111 1223455566677777777777777665431 111 112233444555667777
Q ss_pred HHHHHHHHHHH
Q 012365 303 SATDLLKQLKD 313 (465)
Q Consensus 303 ~a~~~~~~~~~ 313 (465)
+|...+++...
T Consensus 311 ~A~~~l~~al~ 321 (373)
T 1hz4_A 311 DAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777766554
No 81
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.16 E-value=3.6e-09 Score=80.71 Aligned_cols=131 Identities=12% Similarity=0.151 Sum_probs=115.4
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 012365 12 ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLN 91 (465)
Q Consensus 12 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 91 (465)
..|..+...+...|++++|+.+|+.+.+... .+...+..+...+...|++++|...++.+.+.+ +.+...+..+...+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 3577888999999999999999999987643 367888888999999999999999999998865 56788899999999
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 012365 92 VKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145 (465)
Q Consensus 92 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 145 (465)
...|++++|...++++.... +.+...+..+...+...|++++|...|+++.+.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 99999999999999998765 457888999999999999999999999998764
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.14 E-value=2.2e-09 Score=105.50 Aligned_cols=166 Identities=9% Similarity=0.079 Sum_probs=138.3
Q ss_pred CCCC-HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 012365 7 ITPS-SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85 (465)
Q Consensus 7 ~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 85 (465)
-.|+ ..+|+.+-..|.+.|++++|++.|++..+.... +..++..+..++.+.|++++|.+.|++..+.. +-+...|.
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~ 81 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYS 81 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 3454 678999999999999999999999999886433 68899999999999999999999999999875 45688999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChh
Q 012365 86 SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEE 165 (465)
Q Consensus 86 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 165 (465)
.+..+|.+.|++++|.+.|++..+.. +-+...|+.+...|.+.|++++|++.|++..+. .|+
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~--------------- 143 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPD--------------- 143 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSC---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC---------------
Confidence 99999999999999999999998775 557889999999999999999999999998763 233
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012365 166 DIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208 (465)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 208 (465)
+...+..+..++...|++++|.+.+++
T Consensus 144 ----------------~~~a~~~L~~~l~~~g~~~~A~~~~~k 170 (723)
T 4gyw_A 144 ----------------FPDAYCNLAHCLQIVCDWTDYDERMKK 170 (723)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred ----------------ChHHHhhhhhHHHhcccHHHHHHHHHH
Confidence 345566666667777777766666654
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.14 E-value=2.2e-08 Score=84.47 Aligned_cols=134 Identities=8% Similarity=-0.000 Sum_probs=98.2
Q ss_pred CCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 012365 9 PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMI 88 (465)
Q Consensus 9 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 88 (465)
.|+..|......+.+.|++++|++.|+...+...+++...+..+..++...|++++|.+.++...+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 35677777777788888888888888888776544567777777777778888888888888877764 34566777778
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012365 89 SLNVKIKDFDSAYSLLDDLKEMNLMPTA-------SMYNAIMAGYFRKKDVQGALMVLKEMEQ 144 (465)
Q Consensus 89 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~ 144 (465)
.+|...|++++|...|++..+.. +.+. ..|..+...+...|++++|.+.|++..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 88888888888888888777653 3344 3466666777777777777777777654
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.14 E-value=3.1e-09 Score=104.54 Aligned_cols=165 Identities=13% Similarity=0.089 Sum_probs=141.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012365 45 STETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124 (465)
Q Consensus 45 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 124 (465)
+..+|+.+..++...|++++|.+.|++..+.. +-+..+|..+..+|.+.|++++|...|++..+.+ +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 46789999999999999999999999999875 4568899999999999999999999999998775 456889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012365 125 GYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQ 204 (465)
Q Consensus 125 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 204 (465)
.+.+.|++++|++.|++..+. .|+ +...++.+..+|...|++++|++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~-------------------------------~~~a~~~Lg~~~~~~g~~~eAi~ 132 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPA-------------------------------FADAHSNLASIHKDSGNIPEAIA 132 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTT-------------------------------CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCC-------------------------------CHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999988753 222 56678888999999999999999
Q ss_pred HHHH-hcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 012365 205 VVLD-AEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKE 245 (465)
Q Consensus 205 ~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 245 (465)
.|++ +...+.... .|..+...|...|++++|.+.+++..+
T Consensus 133 ~~~~Al~l~P~~~~-a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 133 SYRTALKLKPDFPD-AYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHCSCCHH-HHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHhCCCChH-HHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 9998 444444444 589999999999999999999888764
No 85
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.11 E-value=1.4e-08 Score=87.76 Aligned_cols=190 Identities=14% Similarity=0.077 Sum_probs=133.5
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCC---CccchhhHhhHhhhcCChhHHHHHHHHHH
Q 012365 236 AIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDY---WMDGCCRLILHCVRFKQLSSATDLLKQLK 312 (465)
Q Consensus 236 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 312 (465)
|+..|++....+ .++..++..+..++...|++++|++++.+....+. .++.+...+..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667777766554 35566666777788888888888888888766553 45566677777888899999999998887
Q ss_pred Hcccc-----hhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHH
Q 012365 313 DKFKD-----DEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEY 387 (465)
Q Consensus 313 ~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m 387 (465)
+. .| +..+...+..+.+.... ..+++.+|..+|+++. .-.|+..+-..++.++...|++++|.+.++.+
T Consensus 164 ~~-~~d~~~~~d~~l~~Laea~v~l~~--g~~~~q~A~~~f~El~---~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 164 NA-IEDTVSGDNEMILNLAESYIKFAT--NKETATSNFYYYEELS---QTFPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HH-SCHHHHHHHHHHHHHHHHHHHHHH--TCSTTTHHHHHHHHHH---TTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hc-CccccccchHHHHHHHHHHHHHHh--CCccHHHHHHHHHHHH---HhCCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 63 23 23333333333222221 1258999999999998 44565444445555889999999999999977
Q ss_pred HHc-----C----CCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCChhHHHH
Q 012365 388 ENA-----G----LPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQ 434 (465)
Q Consensus 388 ~~~-----g----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l~ 434 (465)
.+. . -+.|+.++..+|......|+ +|.++++++.+..|..+.++.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 653 1 15677788777777777787 899999999998886554443
No 86
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.09 E-value=2.3e-08 Score=84.28 Aligned_cols=198 Identities=10% Similarity=-0.031 Sum_probs=99.2
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCC-ccchhhHhhHhhhcCCh
Q 012365 223 LVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW-MDGCCRLILHCVRFKQL 301 (465)
Q Consensus 223 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 301 (465)
....+...|++++|+..|++..+....++...+..+..++...|++++|...++...+..+. +..+..+...+...|++
T Consensus 13 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 92 (228)
T 4i17_A 13 EGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNN 92 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccH
Confidence 33334444444444444444443332223333333344444444444444444443332211 22233344444445555
Q ss_pred hHHHHHHHHHHHcccchhHH------HHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCc---HHHHHHHHHHhH
Q 012365 302 SSATDLLKQLKDKFKDDEMA------MEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS---RKCLDFLLGACV 372 (465)
Q Consensus 302 ~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~---~~~~~~ll~~~~ 372 (465)
++|+..|++..+..+.+... ....+...+.. .|++++|+..|++.. ...|+ ...|..+..++.
T Consensus 93 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 93 QEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ-----AGNIEKAEENYKHAT---DVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHH-----hccHHHHHHHHHHHH---hcCCCcccHHHHHHHHHHHH
Confidence 55555555544422222211 11111222222 489999999999988 56676 456666766776
Q ss_pred hhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCChhHHHHHH
Q 012365 373 NARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQAC 436 (465)
Q Consensus 373 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l~~~ 436 (465)
..|+ .+++++...+ +.+...|.... ....+.+++|...+++..+.+|.....+...
T Consensus 165 ~~~~-----~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 220 (228)
T 4i17_A 165 NNGA-----DVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQ 220 (228)
T ss_dssp HHHH-----HHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHH-----HHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 5554 3455555543 44444554443 3356778999999999998888765444433
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.09 E-value=2.2e-09 Score=93.64 Aligned_cols=231 Identities=15% Similarity=0.069 Sum_probs=136.1
Q ss_pred hcCCHHHHHHHHHHHhh-------CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHH
Q 012365 58 ESYEFNLVRRIYPMICH-------HNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEM------NL-MPTASMYNAIM 123 (465)
Q Consensus 58 ~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~-~~~~~~~~~li 123 (465)
..|++++|...+++..+ ...+....++..+...|...|++++|...|++.... +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34555555555555443 221234567777888888888888888888877643 11 22356788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 012365 124 AGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKAR 203 (465)
Q Consensus 124 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 203 (465)
..+...|++++|.+.|++..+.. +.......+....++..+...+...|++++|.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~-------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 147 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIR-------------------------EKVLGKFHPDVAKQLNNLALLCQNQGKAEEVE 147 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHH-------------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHH-------------------------HHHcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998876420 00000001112456677778888889999888
Q ss_pred HHHHHh-cC------C-CCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHc-------CCCCCHHH-HHHHHHHHHccC-
Q 012365 204 QVVLDA-EI------P-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA-------GCNLEPRA-VIALIEHLNSEG- 266 (465)
Q Consensus 204 ~~~~~~-~~------~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-------~~~p~~~~-~~~ll~~~~~~g- 266 (465)
+.+++. .. + .+....++..+...|...|++++|...+++..+. ...+.... +..+.......+
T Consensus 148 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (283)
T 3edt_B 148 YYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDK 227 (283)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCc
Confidence 888762 11 1 2223335778888888999999999988887653 11222222 222222222221
Q ss_pred -----cHHHHHHHHHHHcCCC-CCccchhhHhhHhhhcCChhHHHHHHHHHHH
Q 012365 267 -----ELNRLIQLLEEVHDPD-YWMDGCCRLILHCVRFKQLSSATDLLKQLKD 313 (465)
Q Consensus 267 -----~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 313 (465)
.+..+...++...... ..+..+..+...+...|++++|...|++..+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 228 RRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2223333333322211 1123456677778888999999988887764
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.07 E-value=1.2e-09 Score=95.35 Aligned_cols=176 Identities=11% Similarity=0.059 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCccchh
Q 012365 217 SEVKSALVSALASHGRTSDAIIVYEEIKEA------GCNL-EPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCC 289 (465)
Q Consensus 217 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 289 (465)
..++..+...|...|++++|...+.+..+. +-.| ...++..+...+...|++++|...+++..+.
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------- 114 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI-------- 114 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------
Confidence 334677777777777777777777776544 1112 2334555666666666666666665554321
Q ss_pred hHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhc------CCCC-cHH
Q 012365 290 RLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDEL------GLPP-SRK 362 (465)
Q Consensus 290 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~------~~~p-~~~ 362 (465)
+++......|........+...+.. .|++++|+..+++.. .. +..| ...
T Consensus 115 ------------------~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 115 ------------------REKVLGKFHPDVAKQLNNLALLCQN-----QGKAEEVEYYYRRAL-EIYATRLGPDDPNVAK 170 (283)
T ss_dssp ------------------HHHHHCTTCHHHHHHHHHHHHHHHT-----TTCHHHHHHHHHHHH-HHHHHHSCTTCHHHHH
T ss_pred ------------------HHHHcCCCChHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHH-HHHHHhcCCCCHHHHH
Confidence 1111000012222222222222222 377777777777766 32 2233 345
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHc------------------------------------------------CCCC
Q 012365 363 CLDFLLGACVNARDLKRAHLIWKEYENA------------------------------------------------GLPY 394 (465)
Q Consensus 363 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~------------------------------------------------g~~p 394 (465)
++..+...+...|++++|...+++..+. ..+.
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH
Confidence 6777888888999999999998888753 1123
Q ss_pred ChhHHHHHHHHHHhcCChhhHHHHHhccCC
Q 012365 395 NVLSYLWMYKAFLASGNRKSASKLLSKMPK 424 (465)
Q Consensus 395 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 424 (465)
...++..+...|...|++++|.+++++.++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344788888899999999999999988654
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.00 E-value=8.3e-08 Score=82.92 Aligned_cols=173 Identities=10% Similarity=0.051 Sum_probs=101.7
Q ss_pred HHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCC
Q 012365 17 LITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKD 96 (465)
Q Consensus 17 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 96 (465)
+.+++...|++... ....|....+..+...+ ..+ +...+++..+.+ .++..++..+..++...|+
T Consensus 51 ~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~ 115 (310)
T 3mv2_B 51 KAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEELENLLKDK-QNSPYELYLLATAQAILGD 115 (310)
T ss_dssp HHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 44666666666531 12334443444333332 322 677777776665 5566666677788888888
Q ss_pred HHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHhh-------CC
Q 012365 97 FDSAYSLLDDLKEMNL-MPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP-----DSQTFSYLIHNC-------SN 163 (465)
Q Consensus 97 ~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-----~~~~~~~ll~~~-------~~ 163 (465)
+++|.+++.+....|- .-+...+..++..+.+.|+.+.|.+.+++|.+. .| +..+...+..++ .+
T Consensus 116 ~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~ 193 (310)
T 3mv2_B 116 LDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKET 193 (310)
T ss_dssp HHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCST
T ss_pred HHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCcc
Confidence 8888888888765541 135667778888888888888888888888764 45 234433333331 13
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012365 164 EEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208 (465)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 208 (465)
..++..+|+++.+. .|+......++.++.+.|++++|++.++.
T Consensus 194 ~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 194 ATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp TTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444455554332 22322233333356666666666666654
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.96 E-value=1.1e-07 Score=81.89 Aligned_cols=99 Identities=11% Similarity=0.051 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhcC-CCCC--hHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCC-CCC-HHHHH
Q 012365 182 TKYVFMALINAYTTCGEFEKARQVVLDAEI-PVKS--RSEVKSALVSALASHGRTSDAIIVYEEIKEAGC-NLE-PRAVI 256 (465)
Q Consensus 182 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~-~~~~~ 256 (465)
+...+..+...+.+.|++++|...|++... .+.. ....+..+..+|...|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 456666677788888899999988887432 2222 133477788888888999999988888887642 112 34555
Q ss_pred HHHHHHHc--------cCcHHHHHHHHHHHcC
Q 012365 257 ALIEHLNS--------EGELNRLIQLLEEVHD 280 (465)
Q Consensus 257 ~ll~~~~~--------~g~~~~a~~~~~~~~~ 280 (465)
.+..++.. .|++++|...|+++.+
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 125 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFID 125 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 66666666 6777777777776654
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.94 E-value=6.2e-08 Score=73.68 Aligned_cols=59 Identities=15% Similarity=0.254 Sum_probs=28.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012365 84 FRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME 143 (465)
Q Consensus 84 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 143 (465)
+..+...+...|++++|..+|+++...+ +.+...+..+...+...|++++|...|+++.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 62 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3344444455555555555555544432 2344444445555555555555555555443
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.92 E-value=3.8e-08 Score=86.49 Aligned_cols=206 Identities=11% Similarity=-0.048 Sum_probs=123.3
Q ss_pred HHHHcCCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCC-------ccchhhHh
Q 012365 225 SALASHGRTSDAIIVYEEIKEA----GCNLE-PRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW-------MDGCCRLI 292 (465)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-------~~~~~~~~ 292 (465)
..|...|++++|...|.+..+. |-.++ ..+|..+..+|.+.|++++|...+++..+.... ...+..+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455566666666666655432 21111 345566666666666666666666655432110 12344566
Q ss_pred hHhhhc-CChhHHHHHHHHHHHcccch----h-HHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCC-CcH----
Q 012365 293 LHCVRF-KQLSSATDLLKQLKDKFKDD----E-MAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLP-PSR---- 361 (465)
Q Consensus 293 ~~~~~~-~~~~~a~~~~~~~~~~~~~~----~-~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~-p~~---- 361 (465)
..|... |++++|+..|++..+..+.. . ......+..++.. .|++++|+..|++.. ..... +..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~-----~g~~~~A~~~~~~al-~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL-----DGQYIEASDIYSKLI-KSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHH-HTTSSCTTTGGGH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHH-HHHhcCCcccHHH
Confidence 666664 88888888888776632111 0 1112222223333 489999999999988 33222 221
Q ss_pred -HHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChh------HHHHHHHHHH--hcCChhhHHHHHhccCCCCCChhHH
Q 012365 362 -KCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVL------SYLWMYKAFL--ASGNRKSASKLLSKMPKDDPHVRFV 432 (465)
Q Consensus 362 -~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~~~~l~~~~~--~~g~~~~A~~~~~~m~~~~~~~~~~ 432 (465)
..|..+..++...|++++|...|++..+. .|+.. .+..++.+|. ..+++++|.+.|+++...+|....+
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 276 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI 276 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHH
Confidence 25677777888999999999999998864 33322 3455666665 4578999999999999988876555
Q ss_pred HHHHHh
Q 012365 433 IQACKQ 438 (465)
Q Consensus 433 l~~~~~ 438 (465)
+.-...
T Consensus 277 ~~~~k~ 282 (292)
T 1qqe_A 277 LNKIKE 282 (292)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544333
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.88 E-value=7.5e-08 Score=83.06 Aligned_cols=183 Identities=10% Similarity=0.043 Sum_probs=119.5
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCC----ccchhh
Q 012365 219 VKSALVSALASHGRTSDAIIVYEEIKEAGCNLE----PRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW----MDGCCR 290 (465)
Q Consensus 219 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~ 290 (465)
.+..+...+...|++++|+..|+++.+.. |+ ...+..+..++.+.|++++|...|+...+..+. +..+..
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 35667777888888888888888888765 33 556677778888888888888888887654321 234445
Q ss_pred HhhHhhh--------cCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHH
Q 012365 291 LILHCVR--------FKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRK 362 (465)
Q Consensus 291 ~~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~ 362 (465)
+...+.. .|++++|+..|+++....+.+....... ..+.... . --..
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~--------------------~~~~~~~-~----~~~~ 149 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDAT--------------------QKIRELR-A----KLAR 149 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHH--------------------HHHHHHH-H----HHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHH--------------------HHHHHHH-H----HHHH
Confidence 5555556 6777777777777766433222222211 1111111 0 0011
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCC---ChhHHHHHHHHHHhc----------CChhhHHHHHhccCCCCCCh
Q 012365 363 CLDFLLGACVNARDLKRAHLIWKEYENAGLPY---NVLSYLWMYKAFLAS----------GNRKSASKLLSKMPKDDPHV 429 (465)
Q Consensus 363 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~~ 429 (465)
.+..+...|...|++++|...|+++.+.. |. ....+..+..+|... |++++|...++++.+..|..
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAY-PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 23456677888899999999999988752 22 234677788888766 88899999999988877754
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.88 E-value=6e-08 Score=95.72 Aligned_cols=174 Identities=11% Similarity=-0.047 Sum_probs=106.9
Q ss_pred hcccCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhc
Q 012365 22 CDLLKVHVALDVVEQMV--------QGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVK 93 (465)
Q Consensus 22 ~~~g~~~~A~~~~~~m~--------~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 93 (465)
...|++++|++.|++.. +.. +.+...+..+..++...|++++|.+.|+++.+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 55677777777777766 322 2245566666666677777777777777766654 3456666666677777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHH
Q 012365 94 IKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQ 173 (465)
Q Consensus 94 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~ 173 (465)
.|++++|...|++..+.. +-+...|..+..++.+.|++++ .+.|++..+.+
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--------------------------- 530 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--------------------------- 530 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC---------------------------
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC---------------------------
Confidence 777777777777766554 3455666666667777777766 66666655421
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCC
Q 012365 174 LKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGR 232 (465)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 232 (465)
+-+...+..+..++.+.|++++|.+.|++.....+.....|..+..++...++
T Consensus 531 ------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 531 ------DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred ------CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 12455666777777788888888888876333333333346666666655444
No 95
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.87 E-value=8.4e-08 Score=84.24 Aligned_cols=207 Identities=7% Similarity=-0.082 Sum_probs=114.2
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---CC--CHH
Q 012365 13 SYKKLITYSCDLLKVHVALDVVEQMVQG----ELVPS-TETINSILHACEESYEFNLVRRIYPMICHHNL---KP--NSE 82 (465)
Q Consensus 13 ~y~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~ 82 (465)
.|+.....|...|++++|++.|++..+. |-+++ ..+|+.+..++...|++++|...+++..+... .+ -..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4566666666667777777777665432 22111 34666666667777777777776666654210 11 134
Q ss_pred HHHHHHHHHhcc-CCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 012365 83 TFRSMISLNVKI-KDFDSAYSLLDDLKEMNL-MPT----ASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSY 156 (465)
Q Consensus 83 ~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 156 (465)
+++.+..+|... |++++|...|++.....- ..+ ..+|+.+...+.+.|++++|+..|++..+.........+
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-- 196 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW-- 196 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG--
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH--
Confidence 566666666664 777777777766543210 001 235666666777777777777777766653211100000
Q ss_pred HHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh-cCCCCChHH----HHHHHHHHHH--c
Q 012365 157 LIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKSRSE----VKSALVSALA--S 229 (465)
Q Consensus 157 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~----~~~~l~~~~~--~ 229 (465)
.....+..+..++...|++++|...|++. ...+..... .+..++.++. .
T Consensus 197 ------------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~ 252 (292)
T 1qqe_A 197 ------------------------SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGD 252 (292)
T ss_dssp ------------------------GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTC
T ss_pred ------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCC
Confidence 00124566677788899999999999873 222221111 2344555554 3
Q ss_pred CCChhHHHHHHHHHHH
Q 012365 230 HGRTSDAIIVYEEIKE 245 (465)
Q Consensus 230 ~g~~~~a~~~~~~m~~ 245 (465)
.+++++|+..|+.+..
T Consensus 253 ~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 253 SEQLSEHCKEFDNFMR 268 (292)
T ss_dssp TTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhccCCc
Confidence 4567777777766543
No 96
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.87 E-value=3.2e-06 Score=79.72 Aligned_cols=371 Identities=9% Similarity=-0.060 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhh-CCC-CCCHHHHHHH
Q 012365 11 SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYE-FNLVRRIYPMICH-HNL-KPNSETFRSM 87 (465)
Q Consensus 11 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~-~~~-~~~~~~~~~l 87 (465)
...|...+..+-. |+++.+..+|++.... .|+...|...+.-..+.++ .+.+..+|+.... .|. ..+...|...
T Consensus 15 R~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 15 SAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 4556666665544 6677777777777663 3577777766666555542 3445666666554 232 2356666666
Q ss_pred HHHHhc----cCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 012365 88 ISLNVK----IKDFDSAYSLLDDLKEMNLMPT--ASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC 161 (465)
Q Consensus 88 i~~~~~----~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 161 (465)
+..+.. .++.+.+.++|++.... |+. ...|...... .+..+...+.+++.+...
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~~----------------- 151 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFENF-ELELNKITGKKIVGDTLP----------------- 151 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHHH-----------------
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHH-HHHhccccHHHHHHHHhH-----------------
Confidence 665432 35566677777777652 221 1122222111 111122222222222110
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChh
Q 012365 162 SNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCG-------EFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTS 234 (465)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 234 (465)
....+..+++.+...-...+...|...+..-...+ ..+.+..+|++.-...+.....|...+.-+.+.|+++
T Consensus 152 -~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~ 230 (493)
T 2uy1_A 152 -IFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKE 230 (493)
T ss_dssp -HHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHH
T ss_pred -HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 00001111111111000012233433333322110 0234555666522211222334777777777788888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCC-----C-C----ccchhhHhhHhhhcCChhHH
Q 012365 235 DAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPD-----Y-W----MDGCCRLILHCVRFKQLSSA 304 (465)
Q Consensus 235 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~-~----~~~~~~~~~~~~~~~~~~~a 304 (465)
.|..++.+.... |....+......+.+.+.. ...+.+...... . . ...+...+....+.+..+.|
T Consensus 231 ~ar~i~erAi~~---P~~~~l~~~y~~~~e~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~A 305 (493)
T 2uy1_A 231 KAKKVVERGIEM---SDGMFLSLYYGLVMDEEAV--YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELF 305 (493)
T ss_dssp HHHHHHHHHHHH---CCSSHHHHHHHHHTTCTHH--HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHhC---CCcHHHHHHHHhhcchhHH--HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888776 3333222211111111111 111111111000 0 0 01222333334456778899
Q ss_pred HHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHH
Q 012365 305 TDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIW 384 (465)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 384 (465)
..+|++. .........|... +.+.... .++.+.|..+|+......+- ++..|...++-....|+.+.|+.+|
T Consensus 306 R~i~~~A-~~~~~~~~v~i~~--A~lE~~~---~~d~~~ar~ife~al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~ 377 (493)
T 2uy1_A 306 RKLFIEL-GNEGVGPHVFIYC--AFIEYYA---TGSRATPYNIFSSGLLKHPD--STLLKEEFFLFLLRIGDEENARALF 377 (493)
T ss_dssp HHHHHHH-TTSCCCHHHHHHH--HHHHHHH---HCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHh-hCCCCChHHHHHH--HHHHHHH---CCChHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999888 3111111112110 1111110 14689999999998833322 3445666777777889999999999
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccC
Q 012365 385 KEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMP 423 (465)
Q Consensus 385 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 423 (465)
+.+. .....|...+..-...|+.+.+.++++++.
T Consensus 378 er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 378 KRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9872 356778888877777899999988888765
No 97
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.84 E-value=7.9e-08 Score=80.82 Aligned_cols=183 Identities=10% Similarity=-0.018 Sum_probs=119.2
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCcc----chhhHhh
Q 012365 220 KSALVSALASHGRTSDAIIVYEEIKEAGCN-LE-PRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMD----GCCRLIL 293 (465)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~ 293 (465)
+..+...+...|++++|+..|+++.+.... |. ...+..+..++.+.|++++|...|+.+.+..+... .+..+..
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~ 86 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGL 86 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHH
Confidence 555677788889999999999988876522 11 34666777888888888888888888765433211 2222222
Q ss_pred HhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHH-HH--------
Q 012365 294 HCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRK-CL-------- 364 (465)
Q Consensus 294 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~-~~-------- 364 (465)
.+...+.. .+.... .+.. ...+.|+.++|+..|+++. ...|+.. .+
T Consensus 87 ~~~~~~~~-----~~~~~~------------~~~~-----~~~~~~~~~~A~~~~~~~l---~~~P~~~~a~~a~~~l~~ 141 (225)
T 2yhc_A 87 TNMALDDS-----ALQGFF------------GVDR-----SDRDPQQARAAFSDFSKLV---RGYPNSQYTTDATKRLVF 141 (225)
T ss_dssp HHHHHHC------------------------------------CCHHHHHHHHHHHHHH---TTCTTCTTHHHHHHHHHH
T ss_pred HHHhhhhh-----hhhhhh------------ccch-----hhcCcHHHHHHHHHHHHHH---HHCcCChhHHHHHHHHHH
Confidence 33222110 000000 0000 1113588999999999988 3344322 11
Q ss_pred ---------HHHHHHhHhhhhhhHHHHHHHHHHHcCCCCCh---hHHHHHHHHHHhcCChhhHHHHHhccCCCCCC
Q 012365 365 ---------DFLLGACVNARDLKRAHLIWKEYENAGLPYNV---LSYLWMYKAFLASGNRKSASKLLSKMPKDDPH 428 (465)
Q Consensus 365 ---------~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 428 (465)
..+...+.+.|++++|...|+++.+. .|.+. ..+..+..+|.+.|++++|.+.++++...+|.
T Consensus 142 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 142 LKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD-YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH-CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 23455678899999999999999986 23333 46888999999999999999999988876663
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.82 E-value=4.2e-07 Score=75.27 Aligned_cols=60 Identities=15% Similarity=0.164 Sum_probs=46.8
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 012365 85 RSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145 (465)
Q Consensus 85 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 145 (465)
..+..+|.+.|++++|...|++..+.. |.+...|..+...+...|++++|...|++..+.
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 347777888888888888888877765 456778888888888888888888888887763
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.79 E-value=1.2e-07 Score=78.48 Aligned_cols=180 Identities=14% Similarity=0.056 Sum_probs=103.2
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhc
Q 012365 220 KSALVSALASHGRTSDAIIVYEEIKEAGCNLEPR-AVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRF 298 (465)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (465)
+......+...|++++|+..|++..+.. |+.. .+.. . .. ..... ..+.....+...+.+.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~-~-~~--~~~~~-------------~~~~~~~~lg~~~~~~ 67 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYW-T-NV--DKNSE-------------ISSKLATELALAYKKN 67 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHH-H-HS--CTTSH-------------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHH-h-hh--cchhh-------------hhHHHHHHHHHHHHHC
Confidence 3445567778999999999999988865 5432 2222 0 00 00000 0011122345556677
Q ss_pred CChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCC-cHHHHHHHHHHhHhhhh-
Q 012365 299 KQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPP-SRKCLDFLLGACVNARD- 376 (465)
Q Consensus 299 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~- 376 (465)
|++++|+..|++..+..+.+...+..+-..++.. |++++|+..|++.. .+.| +...|..+..++...|+
T Consensus 68 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCR------GQEKDALRMYEKIL---QLEADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH------TCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHHhHH
Confidence 7777777777777664444444444443333333 77778887777777 2344 45566667666655543
Q ss_pred -hhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCCh
Q 012365 377 -LKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHV 429 (465)
Q Consensus 377 -~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 429 (465)
...+...++.... .+|....+..+..++...|++++|...|++.++.+|..
T Consensus 139 ~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 139 EKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 3344555555432 22333344455666777888888888888888887764
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.74 E-value=1.6e-07 Score=92.62 Aligned_cols=166 Identities=12% Similarity=0.016 Sum_probs=116.7
Q ss_pred HccCcHHHHHHHHHHHc--------CCC-CCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhh
Q 012365 263 NSEGELNRLIQLLEEVH--------DPD-YWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQI 333 (465)
Q Consensus 263 ~~~g~~~~a~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 333 (465)
...|++++|.+.+++.. +.. .....+..+...+...|++++|+..|++..+..+.+...++.+-..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~- 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT- 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc-
Confidence 56677777777777765 222 22345556666677778888888888777775444444444444433333
Q ss_pred hcCCCCchhhhHHhHHHHHhhcCCCC-cHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Q 012365 334 ATTDPPDVQIGLDLLQFIKDELGLPP-SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNR 412 (465)
Q Consensus 334 ~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 412 (465)
|++++|+..|++.. ...| +...|..+..++...|++++ .+.|++..+.+ |.+...|..+..+|.+.|++
T Consensus 481 -----g~~~~A~~~~~~al---~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 481 -----GDYDSATKHFTEVL---DTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDR 550 (681)
T ss_dssp -----TCHHHHHHHHHHHH---HHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred -----CCHHHHHHHHHHHH---HhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCH
Confidence 88888888888877 3344 45667778888888899988 88888888863 66777888888889999999
Q ss_pred hhHHHHHhccCCCCCChhHHHHHHHhh
Q 012365 413 KSASKLLSKMPKDDPHVRFVIQACKQT 439 (465)
Q Consensus 413 ~~A~~~~~~m~~~~~~~~~~l~~~~~~ 439 (465)
++|.+.+++.++.+|.+.......+..
T Consensus 551 ~~A~~~~~~al~l~P~~~~a~~~~~~~ 577 (681)
T 2pzi_A 551 VGAVRTLDEVPPTSRHFTTARLTSAVT 577 (681)
T ss_dssp HHHHHHHHTSCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCcccHHHHHHHHHH
Confidence 999999999988888765544444444
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.74 E-value=2.5e-08 Score=77.85 Aligned_cols=91 Identities=11% Similarity=0.028 Sum_probs=62.6
Q ss_pred CchhhhHHhHHHHHhhcCCCC-cHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHH
Q 012365 339 PDVQIGLDLLQFIKDELGLPP-SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASK 417 (465)
Q Consensus 339 ~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 417 (465)
|++++|++.|++.. .+.| +...|..+..++...|++++|...|++..+.. |.+..+|..+...|.+.|++++|.+
T Consensus 45 ~~~~~A~~~~~~al---~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~ 120 (150)
T 4ga2_A 45 KEYDLAKKYICTYI---NVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAK 120 (150)
T ss_dssp TCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHH
T ss_pred CCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHH
Confidence 66666666666666 2334 45667777777788888888888888887763 5566777778888888888776555
Q ss_pred H-HhccCCCCCChhHHH
Q 012365 418 L-LSKMPKDDPHVRFVI 433 (465)
Q Consensus 418 ~-~~~m~~~~~~~~~~l 433 (465)
. +++..+.+|....+.
T Consensus 121 ~~~~~al~l~P~~~~~~ 137 (150)
T 4ga2_A 121 YWVERAAKLFPGSPAVY 137 (150)
T ss_dssp HHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHhCcCCHHHH
Confidence 4 577777776554443
No 102
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.73 E-value=6.5e-07 Score=74.32 Aligned_cols=128 Identities=13% Similarity=0.011 Sum_probs=111.4
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 012365 12 ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLN 91 (465)
Q Consensus 12 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 91 (465)
..+..+...+...|++++|++.|++. +.|+...+..+..++...|++++|.+.++...+.. +.+...+..+..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 44566777888999999999999876 36688999999999999999999999999998875 56788999999999
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 012365 92 VKIKDFDSAYSLLDDLKEMNLMPTA----------------SMYNAIMAGYFRKKDVQGALMVLKEMEQA 145 (465)
Q Consensus 92 ~~~g~~~~a~~~~~~m~~~~~~~~~----------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 145 (465)
...|++++|...|++..+.. +.+. ..+..+...+.+.|++++|.+.|++..+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 99999999999999998753 2222 78889999999999999999999999865
No 103
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.73 E-value=2.8e-06 Score=70.48 Aligned_cols=178 Identities=11% Similarity=0.050 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccC----CHHHHHHH
Q 012365 28 HVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIK----DFDSAYSL 103 (465)
Q Consensus 28 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~ 103 (465)
.+|++.|++..+.| +...+..+...+...+++++|.+.|+...+.| ++..+..|-..|.. + ++++|...
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35777888887765 67788888888888899999999999988876 67777788888877 6 89999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCC
Q 012365 104 LDDLKEMNLMPTASMYNAIMAGYFR----KKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGG 179 (465)
Q Consensus 104 ~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 179 (465)
|++..+.| +...+..|...|.. .+++++|++.|++..+.|...
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~------------------------------ 122 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESD------------------------------ 122 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH------------------------------
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc------------------------------
Confidence 99887754 67778888888876 788888888888876653210
Q ss_pred CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHcC-C-----ChhHHHHHHHHHHHcCC
Q 012365 180 QITKYVFMALINAYTT----CGEFEKARQVVLDA-EIPVKSRSEVKSALVSALASH-G-----RTSDAIIVYEEIKEAGC 248 (465)
Q Consensus 180 ~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 248 (465)
.++..+..|...|.. .++.++|...|++. ..+..+. .+..|...|... | ++++|..+|+...+.|.
T Consensus 123 -~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~--a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 123 -AAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGY--AEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp -HHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTH--HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred -chHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHH--HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 013445555556665 67889999999873 3322222 356666666543 3 78899999998888873
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.72 E-value=3.9e-07 Score=88.26 Aligned_cols=119 Identities=8% Similarity=-0.111 Sum_probs=87.8
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 012365 24 LLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103 (465)
Q Consensus 24 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 103 (465)
.|++++|++.|++..+... -+...+..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999999877543 367888889999999999999999999998875 55688999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 012365 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145 (465)
Q Consensus 104 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 145 (465)
|++..+.. +.+...|..+...+.+.|++++|.+.|++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 120 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL 120 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99988765 556788999999999999999999999998764
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.72 E-value=3.4e-07 Score=80.03 Aligned_cols=94 Identities=6% Similarity=0.013 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HH
Q 012365 47 ETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM-AG 125 (465)
Q Consensus 47 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li-~~ 125 (465)
..+..+...+...|++++|...|++..+.. +-+...+..+...+.+.|++++|...+++..... |+........ ..
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~~ 194 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHHH
Confidence 334444444555555555555555554443 2344455555555555555555555555544332 3322222111 12
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 012365 126 YFRKKDVQGALMVLKEME 143 (465)
Q Consensus 126 ~~~~g~~~~a~~~~~~m~ 143 (465)
+...++.++|...|++..
T Consensus 195 l~~~~~~~~a~~~l~~al 212 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQV 212 (287)
T ss_dssp HHHHHTSCHHHHHHHHHH
T ss_pred HHhhcccCccHHHHHHHH
Confidence 334444455555554444
No 106
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.72 E-value=1.2e-07 Score=73.95 Aligned_cols=124 Identities=10% Similarity=0.023 Sum_probs=100.1
Q ss_pred HHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCH
Q 012365 18 ITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDF 97 (465)
Q Consensus 18 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 97 (465)
-..+...|++++|++.++....... -+...+..+...|...|++++|.+.|++..+.. +-+..+|..+..+|.+.|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 3456678999999999998765421 134455668888999999999999999999876 56789999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHH
Q 012365 98 DSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMV-LKEMEQ 144 (465)
Q Consensus 98 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~ 144 (465)
++|...|++..+.+ |-+...|..+...|.+.|+.++|.+. +++..+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999998875 55688999999999999998876655 576665
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.71 E-value=3.5e-07 Score=80.01 Aligned_cols=162 Identities=12% Similarity=0.116 Sum_probs=100.1
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 012365 78 KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYL 157 (465)
Q Consensus 78 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 157 (465)
+.+...+..+...+.+.|++++|...|++..... |-+...+..+...+...|++++|...+++.... .|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 4456777788888999999999999999998765 557888999999999999999999999987653 3554322221
Q ss_pred HHh----hCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh-cCCCCC-hHHHHHHHHHHHHcCC
Q 012365 158 IHN----CSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA-EIPVKS-RSEVKSALVSALASHG 231 (465)
Q Consensus 158 l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~-~~~~~~~l~~~~~~~g 231 (465)
... ..+...+...++...+.. +.+...+..+...+...|++++|.+.|++. ...+.. ....+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 111 112222333444444433 224555555556666666666666666552 222211 1223555555565566
Q ss_pred ChhHHHHHHHHH
Q 012365 232 RTSDAIIVYEEI 243 (465)
Q Consensus 232 ~~~~a~~~~~~m 243 (465)
+.++|...+++.
T Consensus 270 ~~~~a~~~~r~a 281 (287)
T 3qou_A 270 TGDALASXYRRQ 281 (287)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCcHHHHHHHH
Confidence 655555555543
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.71 E-value=3.2e-06 Score=70.85 Aligned_cols=187 Identities=11% Similarity=-0.015 Sum_probs=114.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhc-CCCCC--hHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCH--HHHH
Q 012365 182 TKYVFMALINAYTTCGEFEKARQVVLDAE-IPVKS--RSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEP--RAVI 256 (465)
Q Consensus 182 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~ 256 (465)
+...+..+...+.+.|++++|...|++.. ..+.. ....+..+..+|...|++++|+..|+++.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34455666778899999999999999832 22222 2234777889999999999999999999887622111 2333
Q ss_pred HHHHHHHc------------------cCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccch
Q 012365 257 ALIEHLNS------------------EGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDD 318 (465)
Q Consensus 257 ~ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 318 (465)
.+..++.. .|+.++|...|+++.+..+... ....+......+.. .
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~-------------~a~~a~~~l~~~~~----~ 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ-------------YTTDATKRLVFLKD----R 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCT-------------THHHHHHHHHHHHH----H
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh-------------hHHHHHHHHHHHHH----H
Confidence 34444433 4667777777777765432211 01111111111111 0
Q ss_pred hHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCC-cHHHHHHHHHHhHhhhhhhHHHHHHHHHHHc
Q 012365 319 EMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPP-SRKCLDFLLGACVNARDLKRAHLIWKEYENA 390 (465)
Q Consensus 319 ~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 390 (465)
.......+..++.. .|++++|+..|+++.+...-.| ....+..+..++.+.|+.++|.+.++.+...
T Consensus 146 ~~~~~~~~a~~~~~-----~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 146 LAKYEYSVAEYYTE-----RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH-----cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 00000111112222 3999999999999982222222 1256778889999999999999999998876
No 109
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.71 E-value=7.7e-07 Score=70.44 Aligned_cols=130 Identities=8% Similarity=-0.022 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 012365 11 SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL 90 (465)
Q Consensus 11 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 90 (465)
...|..+...+...|++++|...|+...+... .+...+..+..++...|++++|...++...+.. +.+...+..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 45677788888899999999999999887643 367888888889999999999999999988865 5578889999999
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 012365 91 NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI--MAGYFRKKDVQGALMVLKEME 143 (465)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l--i~~~~~~g~~~~a~~~~~~m~ 143 (465)
+...|++++|...|++..... +.+...+..+ ...+.+.|++++|.+.+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999988764 3455555443 344778899999999888764
No 110
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.69 E-value=1e-05 Score=70.60 Aligned_cols=222 Identities=8% Similarity=-0.060 Sum_probs=137.7
Q ss_pred HhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH----hcc
Q 012365 21 SCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY--EFNLVRRIYPMICHHNLKPNSETFRSMISLN----VKI 94 (465)
Q Consensus 21 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~ 94 (465)
..+....++|+++++.+....+. +...|+.--.++...+ +++++++.++.+...+ +-+..+|+.--..+ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhc
Confidence 33344457899999999886543 5667777777777778 8999999999998865 44566666554444 444
Q ss_pred ---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHH
Q 012365 95 ---KDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ--GALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK 169 (465)
Q Consensus 95 ---g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 169 (465)
++++++..+++.+.+.. +.+..+|+.-.-.+.+.|.++ ++++.++++.+.+. -|...++
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~-------------- 184 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWS-------------- 184 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHH--------------
T ss_pred cccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHH--------------
Confidence 78889999999988776 678888888887778888887 88888888876432 1222222
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHH-hcCCCCChHHHHHHHHHHHHcCCChhH-HHHHHH
Q 012365 170 YYEQLKSAGGQITKYVFMALINAYTTCGE------FEKARQVVLD-AEIPVKSRSEVKSALVSALASHGRTSD-AIIVYE 241 (465)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~ 241 (465)
--...+...+. ++++++.+++ +...+.+.. .|+-+-..+.+.|+... +..+..
T Consensus 185 ------------------~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~S-aW~y~~~ll~~~~~~~~~~~~~~~ 245 (306)
T 3dra_A 185 ------------------HRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPS-TWNYLLGIHERFDRSITQLEEFSL 245 (306)
T ss_dssp ------------------HHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHH-HHHHHHHHHHHTTCCGGGGHHHHH
T ss_pred ------------------HHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCcc-HHHHHHHHHHhcCCChHHHHHHHH
Confidence 21112222222 4555555554 233333333 36666666666665433 334444
Q ss_pred HHHHcC--CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHc
Q 012365 242 EIKEAG--CNLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279 (465)
Q Consensus 242 ~m~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 279 (465)
++...+ -..++..+..+..++.+.|+.++|.++++.+.
T Consensus 246 ~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 246 QFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp TTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 443322 12345556666666666666666666666554
No 111
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.69 E-value=8.1e-07 Score=66.26 Aligned_cols=114 Identities=11% Similarity=0.091 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 012365 11 SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL 90 (465)
Q Consensus 11 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 90 (465)
...|..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|..+++.+.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4566667777777777777777777776643 2356666667777777777777777777776654 4456666777777
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012365 91 NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127 (465)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 127 (465)
+...|++++|...|++..... +.+...+..+...+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 777777777777777766543 334444444444443
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.67 E-value=5.8e-07 Score=87.00 Aligned_cols=153 Identities=8% Similarity=0.014 Sum_probs=105.5
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 012365 59 SYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMV 138 (465)
Q Consensus 59 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 138 (465)
.|++++|.+.+++..+.. +.+...+..+...+.+.|++++|...|++..+.. +.+...|..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478889999999887764 4568899999999999999999999999998765 55688899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-hcCCCCChH
Q 012365 139 LKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRS 217 (465)
Q Consensus 139 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~ 217 (465)
|++..+.. |+ +...+..+..++.+.|++++|.+.|++ ....+.. .
T Consensus 80 ~~~al~~~--p~-------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~ 125 (568)
T 2vsy_A 80 LQQASDAA--PE-------------------------------HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE-P 125 (568)
T ss_dssp HHHHHHHC--TT-------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H
T ss_pred HHHHHhcC--CC-------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-H
Confidence 99887631 22 455666777778888888888888877 3333333 3
Q ss_pred HHHHHHHHHHHcC---CChhHHHHHHHHHHHcC
Q 012365 218 EVKSALVSALASH---GRTSDAIIVYEEIKEAG 247 (465)
Q Consensus 218 ~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~~ 247 (465)
..+..+...+... |++++|.+.+++..+.+
T Consensus 126 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 126 YITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 3477778888888 88888888888887765
No 113
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.67 E-value=5.9e-05 Score=71.06 Aligned_cols=339 Identities=11% Similarity=0.027 Sum_probs=189.7
Q ss_pred CCCCHHHHHHHHHHHhcccC-HHHHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHhhCCCCC
Q 012365 7 ITPSSASYKKLITYSCDLLK-VHVALDVVEQMVQG-EL-VPSTETINSILHACE----ESYEFNLVRRIYPMICHHNLKP 79 (465)
Q Consensus 7 ~~p~~~~y~~li~~~~~~g~-~~~A~~~~~~m~~~-~~-~p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~ 79 (465)
..|++..|...+....+.++ .+....+|+..... |. .++...|...+..+. ..++.+.+.++|+..++.....
T Consensus 43 ~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~ 122 (493)
T 2uy1_A 43 KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGS 122 (493)
T ss_dssp TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTT
T ss_pred cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhh
Confidence 35899999999998888774 46678888887653 43 336677777776543 3467899999999999843211
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012365 80 NSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIH 159 (465)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 159 (465)
-...|...... -.......+..++.+.. +.+..|..+++++...--..+...|...+.
T Consensus 123 ~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~ 180 (493)
T 2uy1_A 123 LSELWKDFENF-ELELNKITGKKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLID 180 (493)
T ss_dssp HHHHHHHHHHH-HHHHCHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHhccccHHHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 12233322221 11122223333332211 112223333332221000001122222222
Q ss_pred hh-CC---------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-hcCCCCChHHHHHHHHHHHH
Q 012365 160 NC-SN---------EEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD-AEIPVKSRSEVKSALVSALA 228 (465)
Q Consensus 160 ~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~ 228 (465)
-- .. ...+..+++...... +.+...|...+..+.+.|+.+.|.+++++ ... |.... .|. .|.
T Consensus 181 ~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~-l~~----~y~ 253 (493)
T 2uy1_A 181 LEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMF-LSL----YYG 253 (493)
T ss_dssp HHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSH-HHH----HHH
T ss_pred HHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHH-HHH----HHH
Confidence 11 10 123455777776654 44578888888888999999999999998 333 33322 232 222
Q ss_pred cCCChhHHHHHHHHHHHcC---------CCC---CHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCccchhhHh-hHh
Q 012365 229 SHGRTSDAIIVYEEIKEAG---------CNL---EPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLI-LHC 295 (465)
Q Consensus 229 ~~g~~~~a~~~~~~m~~~~---------~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~ 295 (465)
.....++. ++.+.+.- ..+ ....|...+....+.+..+.|..+|+.....+.....+.... .-+
T Consensus 254 ~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 254 LVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEY 330 (493)
T ss_dssp HHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred hhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHH
Confidence 21122222 33332221 011 123455666666677889999999999932222122222111 112
Q ss_pred hhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhh
Q 012365 296 VRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNAR 375 (465)
Q Consensus 296 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g 375 (465)
...++.+.|..+|+...+..+.....+...+. .... .|+.+.|..+|+... .....|...+.--...|
T Consensus 331 ~~~~d~~~ar~ife~al~~~~~~~~~~~~yid-~e~~-----~~~~~~aR~l~er~~------k~~~lw~~~~~fE~~~G 398 (493)
T 2uy1_A 331 YATGSRATPYNIFSSGLLKHPDSTLLKEEFFL-FLLR-----IGDEENARALFKRLE------KTSRMWDSMIEYEFMVG 398 (493)
T ss_dssp HHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHH-HHHH-----HTCHHHHHHHHHHSC------CBHHHHHHHHHHHHHHS
T ss_pred HHCCChHHHHHHHHHHHHHCCCCHHHHHHHHH-HHHH-----cCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHCC
Confidence 23447999999999988854332222333333 2222 388999999999875 25678888888777889
Q ss_pred hhhHHHHHHHHHHH
Q 012365 376 DLKRAHLIWKEYEN 389 (465)
Q Consensus 376 ~~~~A~~~~~~m~~ 389 (465)
+.+.+..++++..+
T Consensus 399 ~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 399 SMELFRELVDQKMD 412 (493)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988875
No 114
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.67 E-value=3.2e-07 Score=73.68 Aligned_cols=160 Identities=11% Similarity=0.032 Sum_probs=115.2
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-Hh
Q 012365 14 YKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL-NV 92 (465)
Q Consensus 14 y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~ 92 (465)
+......+.+.|++++|+..|++..+... -+...+..+..++...|++++|...++...+.. |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 44566778889999999999998876432 367788889999999999999999999887654 355544333222 22
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHH
Q 012365 93 KIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYE 172 (465)
Q Consensus 93 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~ 172 (465)
..+....|...|++..+.. |.+...+..+...+...|++++|...|+++.+.. |+
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~---------------------- 140 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVN--LG---------------------- 140 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TT----------------------
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--cc----------------------
Confidence 3233445788888887764 4568899999999999999999999999988653 22
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012365 173 QLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208 (465)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 208 (465)
..+...+..+...+...|+.++|...|++
T Consensus 141 -------~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 141 -------AQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp -------TTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred -------cChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 01233455566666667777777666653
No 115
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.67 E-value=3.1e-06 Score=70.23 Aligned_cols=171 Identities=12% Similarity=0.020 Sum_probs=97.1
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 012365 65 VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK----DVQGALMVLK 140 (465)
Q Consensus 65 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~ 140 (465)
|.+.|++..+.| ++..+..+-..|...+++++|...|++..+.| +...+..|...|.. + ++++|++.|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 455566655553 55666666666666666666666666666543 45555555555555 4 5666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhcCCCCC-
Q 012365 141 EMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTT----CGEFEKARQVVLDAEIPVKS- 215 (465)
Q Consensus 141 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~- 215 (465)
+..+.| +...+..|...|.. .+++++|.+.|++.......
T Consensus 78 ~A~~~g-----------------------------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 122 (212)
T 3rjv_A 78 KAVEAG-----------------------------------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESD 122 (212)
T ss_dssp HHHHTT-----------------------------------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH
T ss_pred HHHHCC-----------------------------------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc
Confidence 554321 45556666666665 66777777777763333221
Q ss_pred -hHHHHHHHHHHHHc----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-C-----cHHHHHHHHHHHc
Q 012365 216 -RSEVKSALVSALAS----HGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSE-G-----ELNRLIQLLEEVH 279 (465)
Q Consensus 216 -~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~ 279 (465)
....+..|...|.. .+++++|..+|++..+.+ .++..+..|-..|... | +.++|...++...
T Consensus 123 ~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~ 195 (212)
T 3rjv_A 123 AAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSC 195 (212)
T ss_dssp HHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence 12345666666666 666777777777776652 2333444444444332 1 4555555554443
No 116
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.63 E-value=1.3e-06 Score=65.62 Aligned_cols=94 Identities=12% Similarity=0.056 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 012365 49 INSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128 (465)
Q Consensus 49 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 128 (465)
+......+.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|...|++..+.+ +.+...|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 3334444444444444444444444433 2344444444444444455555555544444433 3334444444445555
Q ss_pred cCCHHHHHHHHHHHHH
Q 012365 129 KKDVQGALMVLKEMEQ 144 (465)
Q Consensus 129 ~g~~~~a~~~~~~m~~ 144 (465)
.|++++|.+.|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555555555544443
No 117
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.62 E-value=1.3e-06 Score=65.80 Aligned_cols=120 Identities=6% Similarity=-0.017 Sum_probs=90.4
Q ss_pred CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 012365 10 SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89 (465)
Q Consensus 10 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 89 (465)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|.+.++...+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 45667777788888888888888888887653 2367777778888888888888888888887754 445777888888
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 012365 90 LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132 (465)
Q Consensus 90 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 132 (465)
++...|++++|...|++..... +.+...+..+...+.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 8888888888888888877664 44666777777777766653
No 118
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.62 E-value=1e-06 Score=66.70 Aligned_cols=120 Identities=7% Similarity=0.005 Sum_probs=78.2
Q ss_pred CCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 012365 8 TPSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSM 87 (465)
Q Consensus 8 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 87 (465)
+.+...|..+...+.+.|++++|++.|++..+... .+...+..+..++...|++++|.+.++...+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 34556677777777777777777777777766532 256666667777777777777777777776654 3456677777
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 012365 88 ISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130 (465)
Q Consensus 88 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 130 (465)
..++.+.|++++|...|++..... +.+...+..+...+...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 777777777777777777766543 223445555555554443
No 119
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.61 E-value=2.2e-06 Score=74.73 Aligned_cols=226 Identities=10% Similarity=-0.003 Sum_probs=150.5
Q ss_pred CHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHcCC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hcc---Cc
Q 012365 198 EFEKARQVVLD-AEIPVKSRSEVKSALVSALASHG--RTSDAIIVYEEIKEAGCNLEPRAVIALIEHL----NSE---GE 267 (465)
Q Consensus 198 ~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~---g~ 267 (465)
..++|+++++. +...+.... .|+.--..+...| +++++++.++.+...+.+ +...|+.--..+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~t-aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINELASHYT-IWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHCcHHHH-HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 34678888876 344444443 4887777777777 899999999988887632 223333222222 333 67
Q ss_pred HHHHHHHHHHHcCCCCC-ccchhhHhhHhhhcCChh--HHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhh
Q 012365 268 LNRLIQLLEEVHDPDYW-MDGCCRLILHCVRFKQLS--SATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIG 344 (465)
Q Consensus 268 ~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A 344 (465)
+++++.+++.+.+..+. ..++..-.....+.+.++ ++++.++++.+..+.+...|+.-...+...........++++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 88888888888764432 334444444445667777 999999999987777777776543322221000000127889
Q ss_pred HHhHHHHHhhcCCCC-cHHHHHHHHHHhHhhhhhhH-HHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCChhhHHHHHh
Q 012365 345 LDLLQFIKDELGLPP-SRKCLDFLLGACVNARDLKR-AHLIWKEYENAG--LPYNVLSYLWMYKAFLASGNRKSASKLLS 420 (465)
Q Consensus 345 ~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~~~~-A~~~~~~m~~~g--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 420 (465)
++.++++. ...| |...|+.+-..+.+.|+... +..+.+++.+.+ -+.++..+..++++|.+.|+.++|.++++
T Consensus 206 l~~~~~aI---~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 206 LNYVKDKI---VKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHH---HHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHH---HhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 99988888 3344 67778888777878777444 556777666542 25577789999999999999999999999
Q ss_pred ccCC-CCCC
Q 012365 421 KMPK-DDPH 428 (465)
Q Consensus 421 ~m~~-~~~~ 428 (465)
.+.+ -+|.
T Consensus 283 ~l~~~~Dpi 291 (306)
T 3dra_A 283 LLKSKYNPI 291 (306)
T ss_dssp HHHHTTCGG
T ss_pred HHHhccChH
Confidence 9885 5774
No 120
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.59 E-value=4.3e-07 Score=72.93 Aligned_cols=161 Identities=11% Similarity=-0.035 Sum_probs=93.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcC
Q 012365 220 KSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFK 299 (465)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (465)
+......+...|++++|...|++..+... -+...+..+..++...|++++|...++......+.+.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~------------- 74 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNS------------- 74 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHH-------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChH-------------
Confidence 34455556666666666666666554431 1345555566666666666666666665543221000
Q ss_pred ChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCC-cHHHHHHHHHHhHhhhhhh
Q 012365 300 QLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPP-SRKCLDFLLGACVNARDLK 378 (465)
Q Consensus 300 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~~~ 378 (465)
+......+ .... .+...+|+..+++.. ...| +...+..+..++...|+++
T Consensus 75 ----------------------~~~~~~~~-~~~~---~~~~~~a~~~~~~al---~~~P~~~~~~~~la~~~~~~g~~~ 125 (176)
T 2r5s_A 75 ----------------------YKSLIAKL-ELHQ---QAAESPELKRLEQEL---AANPDNFELACELAVQYNQVGRDE 125 (176)
T ss_dssp ----------------------HHHHHHHH-HHHH---HHTSCHHHHHHHHHH---HHSTTCHHHHHHHHHHHHHTTCHH
T ss_pred ----------------------HHHHHHHH-HHHh---hcccchHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcccHH
Confidence 00000000 0000 011223455565555 2345 4667778888888899999
Q ss_pred HHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCChhhHHHHHhccC
Q 012365 379 RAHLIWKEYENAGLP-YNVLSYLWMYKAFLASGNRKSASKLLSKMP 423 (465)
Q Consensus 379 ~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 423 (465)
+|...|+++.+..-. .+...+..+...|...|+.++|...|++.+
T Consensus 126 ~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 126 EALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 999999988876311 135578888888999999999988887654
No 121
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.58 E-value=5.3e-07 Score=72.46 Aligned_cols=122 Identities=7% Similarity=0.095 Sum_probs=101.7
Q ss_pred HhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HhccCCH--
Q 012365 21 SCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL-NVKIKDF-- 97 (465)
Q Consensus 21 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~-- 97 (465)
+...|++++|+..|+...+... .+...+..+...+...|++++|...|+...+.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 4567899999999999887643 477889999999999999999999999998865 4578888888888 7789998
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 012365 98 DSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145 (465)
Q Consensus 98 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 145 (465)
++|...|++..... +.+...+..+...+...|++++|...|++..+.
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 99999999998775 456788999999999999999999999999875
No 122
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.57 E-value=5.1e-07 Score=70.11 Aligned_cols=104 Identities=12% Similarity=0.026 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012365 45 STETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124 (465)
Q Consensus 45 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 124 (465)
+...+..+...+...|++++|...|+...+.. +.+...|..+..+|...|++++|...|++..... |.+...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 34567777788889999999999999999876 5678999999999999999999999999998775 557888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 012365 125 GYFRKKDVQGALMVLKEMEQANVKPDSQ 152 (465)
Q Consensus 125 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 152 (465)
+|.+.|++++|...|++..+. .|+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 999999999999999998874 35543
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.56 E-value=1.8e-06 Score=75.21 Aligned_cols=190 Identities=8% Similarity=-0.065 Sum_probs=96.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCC-ccchhhHhhHhhhc
Q 012365 220 KSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYW-MDGCCRLILHCVRF 298 (465)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 298 (465)
+..+...+...|++++|+..|++...... -+...+..+..++.+.|++++|...++...+.... +..+..+...+...
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM 85 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 44455555556666666666665555431 14455555555566666666666666665544322 33444555555566
Q ss_pred CChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhh
Q 012365 299 KQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLK 378 (465)
Q Consensus 299 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~ 378 (465)
|++++|...|++.....+.+...+...+...+.. .++.. +.... .....++......+ ..+ ..|+.+
T Consensus 86 g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~---------~~~~~-~~~~~-~~~~~~~~~i~~~l-~~l-~~~~~~ 152 (281)
T 2c2l_A 86 ESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI---------AKKKR-WNSIE-ERRIHQESELHSYL-TRL-IAAERE 152 (281)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH---------HHHHH-HHHHH-HTCCCCCCHHHHHH-HHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH---------HHHHH-HHHHH-HHHHhhhHHHHHHH-HHH-HHHHHH
Confidence 6666666666665542211111111111111111 11111 11122 22333343333333 222 368888
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-CChhhHHHHHhccCC
Q 012365 379 RAHLIWKEYENAGLPYNVLSYLWMYKAFLAS-GNRKSASKLLSKMPK 424 (465)
Q Consensus 379 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~ 424 (465)
+|.+.+++..+.. |.+......+...+.+. +.+++|.++|+++.+
T Consensus 153 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8888888777652 33444444454455555 678888988887765
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.56 E-value=3e-06 Score=63.59 Aligned_cols=114 Identities=9% Similarity=0.030 Sum_probs=96.2
Q ss_pred CCCC-HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 012365 7 ITPS-SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85 (465)
Q Consensus 7 ~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 85 (465)
+-|+ ...|...-..|.+.|++++|++.|++..+... .+...|..+..++...|++++|...++...+.. +.+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHH
Confidence 3454 46688888999999999999999999988653 378899999999999999999999999999876 56789999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012365 86 SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123 (465)
Q Consensus 86 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 123 (465)
.+..++...|++++|...|++..+.. |-+...+..+-
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~ 122 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVD-PSNEEAREGVR 122 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHH
Confidence 99999999999999999999998864 44555555443
No 125
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.55 E-value=2.7e-05 Score=68.14 Aligned_cols=164 Identities=6% Similarity=-0.078 Sum_probs=94.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcCC-CCChH-----HHHHHHHHHHHcCCChhHHHHHHHHHHHcCCC-CC----HHHHHH
Q 012365 189 LINAYTTCGEFEKARQVVLDAEIP-VKSRS-----EVKSALVSALASHGRTSDAIIVYEEIKEAGCN-LE----PRAVIA 257 (465)
Q Consensus 189 l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~ 257 (465)
.+..+...|++++|.+++++.... +..+. ..+..+...+...|++++|+..+.+....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 356677788888888888763222 21111 12334555666667788888888877763211 22 224666
Q ss_pred HHHHHHccCcHHHHHHHHHHHcC----C-CC---CccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHH
Q 012365 258 LIEHLNSEGELNRLIQLLEEVHD----P-DY---WMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEI 329 (465)
Q Consensus 258 ll~~~~~~g~~~~a~~~~~~~~~----~-~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 329 (465)
+...|...|++++|...++++.+ . +. ....+..+...|.+.|++++|...+++..+.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~--------------- 225 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI--------------- 225 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---------------
Confidence 77777777777777777776652 0 00 0113344444455555555555555544330
Q ss_pred HHhhhcCCCCchhhhHHhHHHHHhhcCCCC-cHHHHHHHHHHhHhhhh-hhHHHHHHHHHHH
Q 012365 330 FCQIATTDPPDVQIGLDLLQFIKDELGLPP-SRKCLDFLLGACVNARD-LKRAHLIWKEYEN 389 (465)
Q Consensus 330 ~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~-~~~A~~~~~~m~~ 389 (465)
.. ..+..+ -..+|..+..++.+.|+ +++|.+.+++...
T Consensus 226 ---------------------~~-~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 226 ---------------------SC-RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp ---------------------HH-HTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ---------------------HH-HcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 00 112222 25677778888888884 5888888887764
No 126
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.54 E-value=9.4e-07 Score=78.14 Aligned_cols=89 Identities=10% Similarity=-0.034 Sum_probs=56.8
Q ss_pred CchhhhHHhHHHHHhhc---CCCC-cHHHHHHHHHHhHhhhhhhHHHHHHHHHHHc----CCCCC-hhHHHHHHHHHHhc
Q 012365 339 PDVQIGLDLLQFIKDEL---GLPP-SRKCLDFLLGACVNARDLKRAHLIWKEYENA----GLPYN-VLSYLWMYKAFLAS 409 (465)
Q Consensus 339 ~~~~~A~~~~~~m~~~~---~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~ 409 (465)
|++++|+..|++..... +..+ ...++..+...+...|++++|...|++..+. +..++ ...+..++..+...
T Consensus 129 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~ 208 (307)
T 2ifu_A 129 LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHR 208 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHc
Confidence 67777777776665111 1111 1346667777788888888888888887753 11111 12566666677777
Q ss_pred CChhhHHHHHhccCCCCCC
Q 012365 410 GNRKSASKLLSKMPKDDPH 428 (465)
Q Consensus 410 g~~~~A~~~~~~m~~~~~~ 428 (465)
|++++|...+++.+ .+|.
T Consensus 209 g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 209 ADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp TCHHHHHHHHHHHT-TSTT
T ss_pred CCHHHHHHHHHHHh-CCCC
Confidence 88888888888877 6664
No 127
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.53 E-value=2.4e-06 Score=76.43 Aligned_cols=131 Identities=11% Similarity=-0.019 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 012365 11 SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPS--------------TETINSILHACEESYEFNLVRRIYPMICHHN 76 (465)
Q Consensus 11 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 76 (465)
...|..+-..+.+.|++++|+..|++..+...... ...|..+..++.+.|++++|...++...+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45677778888888889999988888877543321 4778888888888888888888888888765
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 012365 77 LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA-LMVLKEME 143 (465)
Q Consensus 77 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 143 (465)
+.+...|..+..+|...|++++|...|++..+.. +.+...+..+...+.+.|+.++| ...|+.|.
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888888888888888887764 45677788888888888888877 44566554
No 128
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.49 E-value=7.6e-07 Score=69.11 Aligned_cols=98 Identities=11% Similarity=0.105 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012365 45 STETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124 (465)
Q Consensus 45 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 124 (465)
+...+..+...+...|++++|...|+...+.. +.+...|..+..+|...|++++|...|++....+ +.+...|..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 34456666677778888888888888877765 4577778888888888888888888888877664 456677778888
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 012365 125 GYFRKKDVQGALMVLKEMEQ 144 (465)
Q Consensus 125 ~~~~~g~~~~a~~~~~~m~~ 144 (465)
+|...|++++|.+.|++..+
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888887765
No 129
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.49 E-value=1.7e-06 Score=75.24 Aligned_cols=98 Identities=8% Similarity=-0.015 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012365 45 STETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124 (465)
Q Consensus 45 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 124 (465)
+...+..+...+...|++++|...|+...+.. +.+...|..+..+|.+.|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34555666666667777777777777766653 3456677777777777777777777777766553 445666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 012365 125 GYFRKKDVQGALMVLKEMEQ 144 (465)
Q Consensus 125 ~~~~~g~~~~a~~~~~~m~~ 144 (465)
++...|++++|...|++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777654
No 130
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.48 E-value=2.7e-05 Score=64.40 Aligned_cols=138 Identities=12% Similarity=0.058 Sum_probs=104.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012365 48 TINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127 (465)
Q Consensus 48 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 127 (465)
.+..+...+...|++++|.+.|+... .|+..++..+...+.+.|++++|...|++..... +.+...|..+...+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34556677889999999999998763 6788999999999999999999999999988775 567889999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 012365 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQI-TKYVFMALINAYTTCGEFEKARQVV 206 (465)
Q Consensus 128 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 206 (465)
..|++++|.+.|++..+.. |+..... +...+ ....| ....+..+..++...|++++|.+.|
T Consensus 83 ~~~~~~~A~~~~~~al~~~--~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 144 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL--RGNQLID-----YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQL 144 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT--TTCSEEE-----CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHhC--CCccHHH-----HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHH
Confidence 9999999999999988742 2110000 00000 00112 2356667777888888888888888
Q ss_pred HH
Q 012365 207 LD 208 (465)
Q Consensus 207 ~~ 208 (465)
+.
T Consensus 145 ~~ 146 (213)
T 1hh8_A 145 AL 146 (213)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 131
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.47 E-value=2.1e-06 Score=66.54 Aligned_cols=109 Identities=7% Similarity=-0.013 Sum_probs=94.1
Q ss_pred cCCCCC-HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 012365 5 LEITPS-SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSET 83 (465)
Q Consensus 5 ~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 83 (465)
.++.|+ ...+..+-..+.+.|++++|+..|+...+..+. +...|..+..++...|++++|...|++..+.. +.++..
T Consensus 29 l~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~ 106 (151)
T 3gyz_A 29 NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTP 106 (151)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHH
T ss_pred hCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHH
Confidence 345564 457778888999999999999999999987543 78899999999999999999999999999876 557889
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH
Q 012365 84 FRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTAS 117 (465)
Q Consensus 84 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 117 (465)
|..+..+|.+.|++++|...|++..+.. |+..
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 9999999999999999999999998864 6654
No 132
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.47 E-value=0.00021 Score=62.35 Aligned_cols=165 Identities=12% Similarity=0.039 Sum_probs=105.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCC-CCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 012365 52 ILHACEESYEFNLVRRIYPMICHHNL-KPNS----ETFRSMISLNVKIKDFDSAYSLLDDLKEMNLM-PT----ASMYNA 121 (465)
Q Consensus 52 ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~~ 121 (465)
.+..+...|++++|..+++...+... .|+. ..+..+...+...|++++|...|++....... ++ ..+|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667788899999999888876431 1221 13344666677778889999988888763222 22 236888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHc-CCC-CCHHHHHHHHHHHHhcCCH
Q 012365 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSA-GGQ-ITKYVFMALINAYTTCGEF 199 (465)
Q Consensus 122 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~ 199 (465)
+...|...|++++|+..|++..+. ..+. +.. ....++..+...|.+.|++
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQ----------------------------LEALHDNEEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH----------------------------HHHSSCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH----------------------------HHhcccchhHHHHHHHHHHHHHHHHhHH
Confidence 888888899999999888887631 0000 000 1123566677778888888
Q ss_pred HHHHHHHHHh-----cC-CCCChHHHHHHHHHHHHcCCC-hhHHHHHHHHHH
Q 012365 200 EKARQVVLDA-----EI-PVKSRSEVKSALVSALASHGR-TSDAIIVYEEIK 244 (465)
Q Consensus 200 ~~a~~~~~~~-----~~-~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~m~ 244 (465)
++|.+.+++. .. .......+|..+..+|...|+ +++|.+.+++..
T Consensus 213 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 213 EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 8888877651 11 112223346777777777774 477777776654
No 133
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.46 E-value=1.2e-05 Score=71.06 Aligned_cols=88 Identities=9% Similarity=0.051 Sum_probs=39.2
Q ss_pred HHHhcCCHHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHH
Q 012365 55 ACEESYEFNLVRRIYPMICHH----NLKP-NSETFRSMISLNVKIKDFDSAYSLLDDLKEM----NLMP-TASMYNAIMA 124 (465)
Q Consensus 55 ~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~ 124 (465)
.+...|++++|...|.+..+. +-.+ -..+|+.+..+|...|++++|...|++.... |-+. -..+++.+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555555544331 1000 1234455555555555555555555543321 1000 1234445555
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 012365 125 GYFRKKDVQGALMVLKEME 143 (465)
Q Consensus 125 ~~~~~g~~~~a~~~~~~m~ 143 (465)
.|.. |++++|++.|++..
T Consensus 125 ~~~~-g~~~~A~~~~~~Al 142 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAA 142 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHH
Confidence 5555 55555555555544
No 134
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.46 E-value=8.5e-06 Score=59.85 Aligned_cols=98 Identities=6% Similarity=-0.047 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 012365 11 SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL 90 (465)
Q Consensus 11 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 90 (465)
...|..+...+...|++++|...|+...+... .+...+..+..++...|++++|...++...+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 44555566666666666666666666655432 245555556666666666666666666665543 3345556666666
Q ss_pred HhccCCHHHHHHHHHHHHHc
Q 012365 91 NVKIKDFDSAYSLLDDLKEM 110 (465)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~ 110 (465)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 66666666666666665544
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.45 E-value=2.7e-06 Score=72.58 Aligned_cols=134 Identities=12% Similarity=-0.067 Sum_probs=89.6
Q ss_pred hHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCc--HHHHHHHHHH
Q 012365 293 LHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPS--RKCLDFLLGA 370 (465)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~--~~~~~~ll~~ 370 (465)
..+...|++++|.++|+.+.... |.....+..-..++. .+++++|+..|+... ... .|. ...+..+..+
T Consensus 110 ~~L~~~g~y~eA~~~l~~~~~~~-p~~~~~~~~a~l~~~------~~r~~dA~~~l~~a~-~~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 110 ACEAAQGNYADAMEALEAAPVAG-SEHLVAWMKAVVYGA------AERWTDVIDQVKSAG-KWP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHTCHHHHHHHHTSSCCTT-CHHHHHHHHHHHHHH------TTCHHHHHHHHTTGG-GCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH------cCCHHHHHHHHHHhh-ccC-CcccHHHHHHHHHHH
Confidence 44557778888888877766533 322222222222222 388888888887655 211 221 2356677788
Q ss_pred hHhhhhhhHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCChhhHHHHHhccCCCCCChhHHHHHH
Q 012365 371 CVNARDLKRAHLIWKEYENAGLPYN--VLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQAC 436 (465)
Q Consensus 371 ~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l~~~ 436 (465)
+...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...+|. ...-.+.
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 8999999999999999885433243 346777788889999999999999999988887 5444433
No 136
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.41 E-value=1.1e-05 Score=60.01 Aligned_cols=98 Identities=14% Similarity=0.205 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012365 46 TETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125 (465)
Q Consensus 46 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 125 (465)
...+..+...+...|++++|.+.++.+.+.. +.+..++..+...+.+.|++++|...|+++.... +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 5678888889999999999999999998865 4578899999999999999999999999998765 5678889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 012365 126 YFRKKDVQGALMVLKEMEQA 145 (465)
Q Consensus 126 ~~~~g~~~~a~~~~~~m~~~ 145 (465)
+...|++++|...|+++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999998864
No 137
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.41 E-value=9.3e-05 Score=65.30 Aligned_cols=130 Identities=12% Similarity=0.007 Sum_probs=93.0
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 012365 13 SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY-EFNLVRRIYPMICHHNLKPNSETFRSMISLN 91 (465)
Q Consensus 13 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 91 (465)
.++.+-....+.+..++|+++++.+...... +...|+.--.++...| ++++++++++.+...+ +-+..+|+.-..++
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 3444444445556667899999999886544 6667777777777777 5899999999998876 56788888777777
Q ss_pred hcc-C-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHC
Q 012365 92 VKI-K-DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ--------GALMVLKEMEQA 145 (465)
Q Consensus 92 ~~~-g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~ 145 (465)
.+. + +++++..+++.+.+.. +.|..+|+.-.-.+.+.|.++ ++++.++++.+.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~ 196 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV 196 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh
Confidence 666 6 7888999999888765 567777876665555555554 666666666653
No 138
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.40 E-value=1.7e-05 Score=62.46 Aligned_cols=98 Identities=10% Similarity=0.080 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012365 46 TETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125 (465)
Q Consensus 46 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 125 (465)
...+..+...+...|++++|...++...+.. +.+..++..+..++...|++++|...+++..... +.+...|..+...
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3456677778889999999999999998865 4578899999999999999999999999988765 5678889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 012365 126 YFRKKDVQGALMVLKEMEQA 145 (465)
Q Consensus 126 ~~~~g~~~~a~~~~~~m~~~ 145 (465)
+...|++++|.+.|++..+.
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHh
Confidence 99999999999999998764
No 139
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.38 E-value=3.6e-05 Score=67.36 Aligned_cols=168 Identities=6% Similarity=-0.075 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH-hcCCCCChH-----HHHHHHHHHHHcCCChhHHHHHHHHHHHcCC---CCC--HH
Q 012365 185 VFMALINAYTTCGEFEKARQVVLD-AEIPVKSRS-----EVKSALVSALASHGRTSDAIIVYEEIKEAGC---NLE--PR 253 (465)
Q Consensus 185 ~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~---~p~--~~ 253 (465)
.+...+..+...|++++|.+.+++ ....+.... ..+..+...+...|++++|+..+.+...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456667777777777777765 222222111 1133344556666777777777777654321 111 33
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHcCC----CCC----ccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHH
Q 012365 254 AVIALIEHLNSEGELNRLIQLLEEVHDP----DYW----MDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYH 325 (465)
Q Consensus 254 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 325 (465)
+++.+...|...|++++|...+++..+. +.. +..+..+...|...|++++|...+++.....
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~---------- 226 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS---------- 226 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH----------
Confidence 5566666666666666666666655410 000 1233344444445555555555554443300
Q ss_pred HHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCC-cHHHHHHHHHHhHhhhhhhHH-HHHHHHHHH
Q 012365 326 FSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPP-SRKCLDFLLGACVNARDLKRA-HLIWKEYEN 389 (465)
Q Consensus 326 l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A-~~~~~~m~~ 389 (465)
. ..+..+ -..+|..+..+|...|++++| ...+++...
T Consensus 227 --------------------------~-~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 227 --------------------------C-RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp --------------------------H-HTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred --------------------------H-hcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 0 111111 255777888888899999998 777777653
No 140
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.38 E-value=2.6e-05 Score=68.29 Aligned_cols=167 Identities=9% Similarity=-0.099 Sum_probs=111.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHccCcHHHHHHHHHHHcCCCCC-------ccc
Q 012365 220 KSALVSALASHGRTSDAIIVYEEIKEAGCNLEP-----RAVIALIEHLNSEGELNRLIQLLEEVHDPDYW-------MDG 287 (465)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-------~~~ 287 (465)
+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...+++..+.... ...
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 455677888999999999999988775422111 12333445567778888888888776543211 113
Q ss_pred hhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCC--cHHHHH
Q 012365 288 CCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPP--SRKCLD 365 (465)
Q Consensus 288 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p--~~~~~~ 365 (465)
+..+...|...|++++|...|++..+. + +..+..+ ...++.
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~---------------------------------~----~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQ---------------------------------L----EALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------------------H----HHSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---------------------------------H----HhcCccccchHHHHH
Confidence 344555556666666666666655430 0 0111112 124778
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHcC----CCC-ChhHHHHHHHHHHhcCChhhH-HHHHhccC
Q 012365 366 FLLGACVNARDLKRAHLIWKEYENAG----LPY-NVLSYLWMYKAFLASGNRKSA-SKLLSKMP 423 (465)
Q Consensus 366 ~ll~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 423 (465)
.+...|...|++++|...+++..+.. ... -..+|..+...|.+.|++++| ...+++..
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 88889999999999999999987541 111 156889999999999999999 77787765
No 141
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.34 E-value=1.3e-05 Score=59.90 Aligned_cols=95 Identities=11% Similarity=0.061 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 012365 48 TINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYF 127 (465)
Q Consensus 48 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 127 (465)
.+..+...+...|++++|...|+...+.. +.+...|..+..++.+.|++++|...|++..+.+ +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34444444555555555555555555443 3345555555555555555555555555555443 334555555555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 012365 128 RKKDVQGALMVLKEMEQ 144 (465)
Q Consensus 128 ~~g~~~~a~~~~~~m~~ 144 (465)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55666665555555543
No 142
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=3.1e-05 Score=59.60 Aligned_cols=99 Identities=9% Similarity=-0.055 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 012365 9 PSSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPS----TETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETF 84 (465)
Q Consensus 9 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 84 (465)
.+...+..+...+.+.|++++|++.|++..+.. |+ ...+..+..++...|++++|...++...+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 356677777777777888888888888777643 44 4566666677777777777777777776653 3456677
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHc
Q 012365 85 RSMISLNVKIKDFDSAYSLLDDLKEM 110 (465)
Q Consensus 85 ~~li~~~~~~g~~~~a~~~~~~m~~~ 110 (465)
..+..++...|++++|...|++....
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777777777777777777777655
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.33 E-value=4.3e-06 Score=68.58 Aligned_cols=86 Identities=8% Similarity=-0.091 Sum_probs=58.9
Q ss_pred CchhhhHHhHHHHHhh---cCCCC--cHHHHHHHHHHhHhhhhhhHHHHHHHHHHHc----CCCC-ChhHHHHHHHHHHh
Q 012365 339 PDVQIGLDLLQFIKDE---LGLPP--SRKCLDFLLGACVNARDLKRAHLIWKEYENA----GLPY-NVLSYLWMYKAFLA 408 (465)
Q Consensus 339 ~~~~~A~~~~~~m~~~---~~~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~ 408 (465)
|++++|...+++.... .+-.| ....+..+...+...|++++|...+++..+. +.+. -..++..+...+..
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 5666666666554411 12122 2345677888899999999999999988743 2111 12246788889999
Q ss_pred cCChhhHHHHHhccCC
Q 012365 409 SGNRKSASKLLSKMPK 424 (465)
Q Consensus 409 ~g~~~~A~~~~~~m~~ 424 (465)
.|++++|.+.+++..+
T Consensus 160 ~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 160 EKNLLEAQQHWLRARD 175 (203)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999988764
No 144
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.33 E-value=6.2e-06 Score=63.38 Aligned_cols=91 Identities=9% Similarity=-0.053 Sum_probs=41.7
Q ss_pred HHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccC
Q 012365 16 KLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIK 95 (465)
Q Consensus 16 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 95 (465)
.+...+.+.|++++|+..|+....... .+...|..+..++...|++++|...|+...+.. +.++..+..+..+|...|
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLG 100 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 333444444555555555554444322 134444444444444455555555555444433 233444444444444455
Q ss_pred CHHHHHHHHHHHH
Q 012365 96 DFDSAYSLLDDLK 108 (465)
Q Consensus 96 ~~~~a~~~~~~m~ 108 (465)
++++|...|+...
T Consensus 101 ~~~~A~~~~~~al 113 (142)
T 2xcb_A 101 DLDGAESGFYSAR 113 (142)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555555444443
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.33 E-value=1.9e-06 Score=69.15 Aligned_cols=125 Identities=8% Similarity=-0.024 Sum_probs=92.7
Q ss_pred hhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHH-hHhh
Q 012365 296 VRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGA-CVNA 374 (465)
Q Consensus 296 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~-~~~~ 374 (465)
...|++++|...+++.....+.+...+..+-..++. .|++++|+..|++.. ... +.+...+..+..+ +...
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~------~~~~~~A~~~~~~al-~~~-p~~~~~~~~la~~l~~~~ 92 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLW------QNDYSNSLLAYRQAL-QLR-GENAELYAALATVLYYQA 92 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHH------TTCHHHHHHHHHHHH-HHH-CSCHHHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH------cCCHHHHHHHHHHHH-HcC-CCCHHHHHHHHHHHHHhc
Confidence 467889999999988887554454555444444333 399999999999988 322 2256677777777 7788
Q ss_pred hhh--hHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCCh
Q 012365 375 RDL--KRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHV 429 (465)
Q Consensus 375 g~~--~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 429 (465)
|++ ++|...++++.+.. |.+...+..+...|...|++++|...++++.+.+|..
T Consensus 93 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 93 SQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp TTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred CCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 998 99999999999873 6678889999999999999999999999998877643
No 146
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.33 E-value=1.5e-05 Score=59.59 Aligned_cols=99 Identities=9% Similarity=0.020 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 012365 10 SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89 (465)
Q Consensus 10 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 89 (465)
+...|..+...+.+.|++++|+..|++..+... .+...|..+..++...|++++|...++...+.. +.+...|..+..
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 356778888899999999999999999988643 378899999999999999999999999999875 557889999999
Q ss_pred HHhccCCHHHHHHHHHHHHHc
Q 012365 90 LNVKIKDFDSAYSLLDDLKEM 110 (465)
Q Consensus 90 ~~~~~g~~~~a~~~~~~m~~~ 110 (465)
++...|++++|...|++....
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 999999999999999988764
No 147
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.33 E-value=2.1e-05 Score=64.44 Aligned_cols=159 Identities=12% Similarity=0.016 Sum_probs=97.6
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhcCCH
Q 012365 58 ESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEM----NL-MPTASMYNAIMAGYFRKKDV 132 (465)
Q Consensus 58 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~ 132 (465)
..|++++|.++++.+... ......++..+...+...|++++|...+++.... +. +....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456777777744444331 1234566777777777778888887777766541 11 12345677788888899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 012365 133 QGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQI--TKYVFMALINAYTTCGEFEKARQVVLDAE 210 (465)
Q Consensus 133 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 210 (465)
++|.+.+++..+. ..+.+-.+ ...++..+...+...|++++|.+.+++..
T Consensus 83 ~~A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 83 DAARRCFLEEREL----------------------------LASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHH----------------------------HHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----------------------------HHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999888876542 01111010 12345667778888889988888887621
Q ss_pred ----CCCCCh--HHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 012365 211 ----IPVKSR--SEVKSALVSALASHGRTSDAIIVYEEIKE 245 (465)
Q Consensus 211 ----~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 245 (465)
....+. ..++..+...+...|++++|.+.+++..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 111111 12356677778888888888888776654
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.33 E-value=1.4e-05 Score=65.35 Aligned_cols=97 Identities=10% Similarity=-0.050 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----------------HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 012365 46 TETINSILHACEESYEFNLVRRIYPMICHHNLKPN----------------SETFRSMISLNVKIKDFDSAYSLLDDLKE 109 (465)
Q Consensus 46 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 109 (465)
...+..+...+...|++++|...|++..+.. +.+ ..++..+..+|.+.|++++|...+++...
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3444444555555555555555555555432 111 14555555555555555555555555554
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012365 110 MNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQ 144 (465)
Q Consensus 110 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 144 (465)
.. +.+...|..+..++...|++++|.+.|++..+
T Consensus 117 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 117 ID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 43 33445555555555555555555555555544
No 149
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.32 E-value=1.8e-05 Score=59.56 Aligned_cols=101 Identities=12% Similarity=0.115 Sum_probs=89.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 012365 43 VPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122 (465)
Q Consensus 43 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 122 (465)
+.+...+..+...+...|++++|...++...+.. +.+..++..+..++...|++++|...+++..... +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 3456788888899999999999999999998875 4578899999999999999999999999988765 5578899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 012365 123 MAGYFRKKDVQGALMVLKEMEQA 145 (465)
Q Consensus 123 i~~~~~~g~~~~a~~~~~~m~~~ 145 (465)
...+...|++++|.+.|++..+.
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999999998764
No 150
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.32 E-value=1e-05 Score=61.50 Aligned_cols=98 Identities=7% Similarity=-0.106 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 012365 10 SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89 (465)
Q Consensus 10 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 89 (465)
+...|..+...+...|++++|+..|+...+... .+...+..+..++...|++++|...++...+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 455666666666666666666666666655432 245566666666666666666666666666543 334556666666
Q ss_pred HHhccCCHHHHHHHHHHHHH
Q 012365 90 LNVKIKDFDSAYSLLDDLKE 109 (465)
Q Consensus 90 ~~~~~g~~~~a~~~~~~m~~ 109 (465)
++...|++++|...|++...
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666665543
No 151
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.32 E-value=1.9e-05 Score=67.31 Aligned_cols=204 Identities=12% Similarity=0.017 Sum_probs=128.2
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHh-hCCh
Q 012365 93 KIKDFDSAYSLLDDLKEMNLMPTASMYNAI-------MAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHN-CSNE 164 (465)
Q Consensus 93 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~ 164 (465)
..++...|.+.|.+..... |-....|..+ ...+...++..+++..+..- .++.|+......-|.+ |+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~--l~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGS--VQISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHT--TTCCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHH--hcCChhhhhhhhccCCccccc
Confidence 5688888888888887765 4456677666 33444444444443333222 2233332110000000 0000
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 012365 165 EDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIK 244 (465)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 244 (465)
..-+.--....-.+...+...|++++|.++|+......+... ....+...+.+.+++++|+..|+...
T Consensus 95 -----------~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~ 162 (282)
T 4f3v_A 95 -----------TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAG 162 (282)
T ss_dssp -----------EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGG
T ss_pred -----------ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhh
Confidence 000001123445567788899999999999986544443333 45556668889999999999998543
Q ss_pred HcCCCCCH----HHHHHHHHHHHccCcHHHHHHHHHHHcCCCC----CccchhhHhhHhhhcCChhHHHHHHHHHHHc
Q 012365 245 EAGCNLEP----RAVIALIEHLNSEGELNRLIQLLEEVHDPDY----WMDGCCRLILHCVRFKQLSSATDLLKQLKDK 314 (465)
Q Consensus 245 ~~~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 314 (465)
.. |++ ..+..+-.++...|++++|+..|++....+. .++.......++.+.|+.++|...|+++...
T Consensus 163 ~~---~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 163 KW---PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp GC---SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cc---CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 32 333 3566778889999999999999999875443 2335567777888999999999999999884
No 152
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.31 E-value=1.2e-05 Score=61.73 Aligned_cols=98 Identities=9% Similarity=0.096 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012365 46 TETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125 (465)
Q Consensus 46 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 125 (465)
...+..+...+...|++++|...|+...+.. +.+...|..+..++.+.|++++|...|++....+ +.+...|..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 3455666777889999999999999998875 5688899999999999999999999999998875 5677889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 012365 126 YFRKKDVQGALMVLKEMEQA 145 (465)
Q Consensus 126 ~~~~g~~~~a~~~~~~m~~~ 145 (465)
+...|++++|.+.|+...+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999998753
No 153
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.31 E-value=9.1e-06 Score=62.91 Aligned_cols=102 Identities=10% Similarity=-0.038 Sum_probs=88.1
Q ss_pred CCC-CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 012365 7 ITP-SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFR 85 (465)
Q Consensus 7 ~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 85 (465)
+.| +...+..+...+.+.|++++|+..|+....... .+...|..+..++...|++++|...|+...+.. +.++..+.
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~ 93 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPF 93 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHH
Confidence 344 345677788889999999999999999988643 378888899999999999999999999999875 55788899
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHc
Q 012365 86 SMISLNVKIKDFDSAYSLLDDLKEM 110 (465)
Q Consensus 86 ~li~~~~~~g~~~~a~~~~~~m~~~ 110 (465)
.+..+|...|++++|...|++..+.
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998765
No 154
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.31 E-value=2.1e-05 Score=59.68 Aligned_cols=99 Identities=9% Similarity=0.011 Sum_probs=89.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012365 44 PSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123 (465)
Q Consensus 44 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 123 (465)
.+...+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...|++....+ +.+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 467888889999999999999999999998875 5578899999999999999999999999998875 55788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 012365 124 AGYFRKKDVQGALMVLKEMEQ 144 (465)
Q Consensus 124 ~~~~~~g~~~~a~~~~~~m~~ 144 (465)
..+...|++++|...|++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999875
No 155
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.28 E-value=1.2e-05 Score=58.33 Aligned_cols=98 Identities=11% Similarity=-0.043 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--CHHHHHHHH
Q 012365 11 SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKP--NSETFRSMI 88 (465)
Q Consensus 11 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li 88 (465)
...|..+...+.+.|++++|+..|++..+... .+...+..+..++...|++++|.+.+++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 34555566666677777777777777665432 245566666666666777777777777666653 33 466666666
Q ss_pred HHHhcc-CCHHHHHHHHHHHHHc
Q 012365 89 SLNVKI-KDFDSAYSLLDDLKEM 110 (465)
Q Consensus 89 ~~~~~~-g~~~~a~~~~~~m~~~ 110 (465)
.++.+. |++++|.+.+++....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 666667 7777777777666654
No 156
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.27 E-value=1e-05 Score=60.73 Aligned_cols=108 Identities=10% Similarity=0.070 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCC----HHHHH
Q 012365 12 ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNL--KPN----SETFR 85 (465)
Q Consensus 12 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 85 (465)
..|..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...++...+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 455666666666777777777777666543 22555666666666666777777666666655321 111 45566
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 012365 86 SMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122 (465)
Q Consensus 86 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 122 (465)
.+..++...|++++|...|++.... .|+...+..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 6666666666666666666666554 2444444333
No 157
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.27 E-value=2.6e-05 Score=58.38 Aligned_cols=99 Identities=11% Similarity=0.062 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012365 45 STETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124 (465)
Q Consensus 45 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 124 (465)
+...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..... +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 45677778888899999999999999998765 4578899999999999999999999999988764 556888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 012365 125 GYFRKKDVQGALMVLKEMEQA 145 (465)
Q Consensus 125 ~~~~~g~~~~a~~~~~~m~~~ 145 (465)
.+...|++++|...|++..+.
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999998764
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.26 E-value=1.4e-05 Score=63.09 Aligned_cols=99 Identities=11% Similarity=0.005 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 012365 10 SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89 (465)
Q Consensus 10 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 89 (465)
+...|..+...+.+.|++++|++.|++..+.... +...|..+..++...|++++|...++...+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3455666666666667777777777666654322 55566666666666666666666666666654 334666666666
Q ss_pred HHhccCCHHHHHHHHHHHHHc
Q 012365 90 LNVKIKDFDSAYSLLDDLKEM 110 (465)
Q Consensus 90 ~~~~~g~~~~a~~~~~~m~~~ 110 (465)
+|...|++++|...|++....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 666666666666666665543
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.26 E-value=3.6e-05 Score=56.36 Aligned_cols=99 Identities=10% Similarity=-0.006 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012365 45 STETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124 (465)
Q Consensus 45 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 124 (465)
+...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..... +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 34567778888999999999999999998865 4578899999999999999999999999988765 456888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 012365 125 GYFRKKDVQGALMVLKEMEQA 145 (465)
Q Consensus 125 ~~~~~g~~~~a~~~~~~m~~~ 145 (465)
.+...|++++|.+.|++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHc
Confidence 999999999999999998864
No 160
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.25 E-value=1.2e-05 Score=58.45 Aligned_cols=99 Identities=5% Similarity=-0.059 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC--CHHHHHHH
Q 012365 45 STETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMP--TASMYNAI 122 (465)
Q Consensus 45 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~l 122 (465)
+...+..+...+...|++++|...++...+.. +.+...+..+..++...|++++|...|++..+.. +. +...|..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 34566778888899999999999999998865 5578889999999999999999999999998764 44 68889999
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHC
Q 012365 123 MAGYFRK-KDVQGALMVLKEMEQA 145 (465)
Q Consensus 123 i~~~~~~-g~~~~a~~~~~~m~~~ 145 (465)
...+... |++++|.+.+++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 9999999 9999999999998865
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.23 E-value=2.3e-05 Score=61.85 Aligned_cols=99 Identities=11% Similarity=0.059 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012365 45 STETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMA 124 (465)
Q Consensus 45 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 124 (465)
+...+..+...+...|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|...|++..... +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45677888888999999999999999999875 5578999999999999999999999999998875 557889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 012365 125 GYFRKKDVQGALMVLKEMEQA 145 (465)
Q Consensus 125 ~~~~~g~~~~a~~~~~~m~~~ 145 (465)
++...|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999998764
No 162
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.21 E-value=0.0012 Score=58.05 Aligned_cols=120 Identities=8% Similarity=-0.030 Sum_probs=77.5
Q ss_pred cccCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 012365 23 DLLKVH-VALDVVEQMVQGELVPSTETINSILHACEESYE----------FNLVRRIYPMICHHNLKPNSETFRSMISLN 91 (465)
Q Consensus 23 ~~g~~~-~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 91 (465)
+.|.+. +|+++++.+...++. +...|+.--..+...+. ++++..+++.+.... +-+..+|+.-..++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 345444 778888888775433 44455543333333222 567777777777654 45677777766666
Q ss_pred hccC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHC
Q 012365 92 VKIK--DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD-VQGALMVLKEMEQA 145 (465)
Q Consensus 92 ~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~ 145 (465)
.+.+ +++++..+++.+.+.. +.|..+|+.-.-.+...|. ++++++.+.++.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~ 174 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 174 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 6666 3677888888877765 5677777776666666776 47777777777754
No 163
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.19 E-value=3.6e-05 Score=57.66 Aligned_cols=95 Identities=11% Similarity=0.114 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CCCC----HHHHHHH
Q 012365 49 INSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMN--LMPT----ASMYNAI 122 (465)
Q Consensus 49 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~----~~~~~~l 122 (465)
+..+...+.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|...|++..+.+ ..++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3334444444445555554444444432 2334444444444555555555555444443221 0011 1234444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 012365 123 MAGYFRKKDVQGALMVLKEMEQ 144 (465)
Q Consensus 123 i~~~~~~g~~~~a~~~~~~m~~ 144 (465)
..++...|++++|++.|++...
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4555555555555555555443
No 164
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.19 E-value=2.5e-05 Score=58.60 Aligned_cols=109 Identities=8% Similarity=0.006 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCC----HHHH
Q 012365 11 SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHN--LKPN----SETF 84 (465)
Q Consensus 11 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~ 84 (465)
..++..+-..+.+.|++++|++.|++..+..+ -+...|..+..++...|++++|.+.++...+.. ..++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 45678888999999999999999999988643 378889999999999999999999999987642 1222 2467
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 012365 85 RSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAI 122 (465)
Q Consensus 85 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 122 (465)
..+..++...|++++|.+.|++.... .||......+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 78888899999999999999998764 4776654433
No 165
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.17 E-value=0.0012 Score=58.36 Aligned_cols=87 Identities=9% Similarity=0.120 Sum_probs=69.5
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-CHH
Q 012365 57 EESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIK-DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK-K-DVQ 133 (465)
Q Consensus 57 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g-~~~ 133 (465)
...+..++|+++++.+...+ +-+..+|+.--..+...| ++++++.+++.+.... +.+..+|+.-...+... + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 34455578999999999876 556778888777777778 5999999999998876 67888888877777766 6 889
Q ss_pred HHHHHHHHHHHC
Q 012365 134 GALMVLKEMEQA 145 (465)
Q Consensus 134 ~a~~~~~~m~~~ 145 (465)
+++++++.+.+.
T Consensus 143 ~EL~~~~k~L~~ 154 (349)
T 3q7a_A 143 SEIEYIHGSLLP 154 (349)
T ss_dssp HHHHHHHHHTSS
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
No 166
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.17 E-value=3e-05 Score=58.04 Aligned_cols=107 Identities=11% Similarity=0.168 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--CCC----HHHH
Q 012365 46 TETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNL--MPT----ASMY 119 (465)
Q Consensus 46 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~----~~~~ 119 (465)
...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++.....- +++ ..+|
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4567778888999999999999999998865 56788999999999999999999999999876531 122 7788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 012365 120 NAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFS 155 (465)
Q Consensus 120 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 155 (465)
..+...+...|++++|.+.|++..+. .|+.....
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 116 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLK 116 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHH
Confidence 89999999999999999999998874 35544433
No 167
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=2.8e-05 Score=59.84 Aligned_cols=94 Identities=14% Similarity=-0.009 Sum_probs=80.3
Q ss_pred CCchhhhHHhHHHHHhhcCCCCc----HHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChh
Q 012365 338 PPDVQIGLDLLQFIKDELGLPPS----RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRK 413 (465)
Q Consensus 338 ~~~~~~A~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 413 (465)
.|++++|...|++.. ...|+ ...|..+..++...|++++|...+++..+. .+.+...+..+..+|...|+++
T Consensus 41 ~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~ 116 (148)
T 2dba_A 41 CGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-DGGDVKALYRRSQALEKLGRLD 116 (148)
T ss_dssp TTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSCCHHHHHHHHHHHHHHTCHH
T ss_pred hCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-CccCHHHHHHHHHHHHHcCCHH
Confidence 499999999999988 45676 577888888999999999999999999987 3667889999999999999999
Q ss_pred hHHHHHhccCCCCCChhHHHHH
Q 012365 414 SASKLLSKMPKDDPHVRFVIQA 435 (465)
Q Consensus 414 ~A~~~~~~m~~~~~~~~~~l~~ 435 (465)
+|...+++.++.+|........
T Consensus 117 ~A~~~~~~al~~~p~~~~~~~~ 138 (148)
T 2dba_A 117 QAVLDLQRCVSLEPKNKVFQEA 138 (148)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHH
Confidence 9999999999888866544443
No 168
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.15 E-value=2.5e-05 Score=57.97 Aligned_cols=89 Identities=11% Similarity=0.110 Sum_probs=45.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 012365 53 LHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132 (465)
Q Consensus 53 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 132 (465)
...+.+.|++++|...++...+.. +.+...|..+..++...|++++|...|++..... +.+...+..+..++...|++
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 334445555555555555555443 2344555555555555555555555555554443 23444555555555555555
Q ss_pred HHHHHHHHHHH
Q 012365 133 QGALMVLKEME 143 (465)
Q Consensus 133 ~~a~~~~~~m~ 143 (465)
++|...|++..
T Consensus 102 ~~A~~~~~~al 112 (121)
T 1hxi_A 102 NAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 169
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.14 E-value=2.1e-05 Score=70.27 Aligned_cols=143 Identities=11% Similarity=-0.046 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccch-hHHHHHHHHHHH
Q 012365 252 PRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDD-EMAMEYHFSEIF 330 (465)
Q Consensus 252 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 330 (465)
...+..+...+.+.|++++|...|++..+........ ..+.+..+- +. ...+..+-..++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-----------~~~~~~~~~--------~~~~~~~~nla~~~~ 207 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF-----------SNEEAQKAQ--------ALRLASHLNLAMCHL 207 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC-----------CSHHHHHHH--------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC-----------ChHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 4456666677777777777777777665433221000 001111000 11 122333333222
Q ss_pred HhhhcCCCCchhhhHHhHHHHHhhcCCCC-cHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 012365 331 CQIATTDPPDVQIGLDLLQFIKDELGLPP-SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLAS 409 (465)
Q Consensus 331 ~~~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 409 (465)
. .|++++|+..+++.. . +.| +...|..+..+|...|++++|...|++..+. .|.+...+..+..++.+.
T Consensus 208 ~------~g~~~~A~~~~~~al-~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~~~a~~~l~~~~~~~ 277 (336)
T 1p5q_A 208 K------LQAFSAAIESCNKAL-E--LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-YPNNKAAKTQLAVCQQRI 277 (336)
T ss_dssp H------TTCHHHHHHHHHHHH-H--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHH
T ss_pred H------cCCHHHHHHHHHHHH-H--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHH
Confidence 2 399999999999988 3 334 6778889999999999999999999999987 367788999999999999
Q ss_pred CChhhH-HHHHhccC
Q 012365 410 GNRKSA-SKLLSKMP 423 (465)
Q Consensus 410 g~~~~A-~~~~~~m~ 423 (465)
|++++| ..++++|.
T Consensus 278 ~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 278 RRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998 55666665
No 170
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.13 E-value=1.1e-05 Score=75.92 Aligned_cols=121 Identities=8% Similarity=-0.086 Sum_probs=89.6
Q ss_pred hHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCC-cHHHHHHHH
Q 012365 290 RLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPP-SRKCLDFLL 368 (465)
Q Consensus 290 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll 368 (465)
.+...+.+.|++++|++.|++..+..+.+...+..+-..++. .|++++|++.+++.. + +.| +...|..+.
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~------~g~~~~A~~~~~~al-~--l~p~~~~~~~~lg 81 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR------TECYGYALGDATRAI-E--LDKKYIKGYYRRA 81 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------TTCHHHHHHHHHHHH-H--SCTTCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH------hcCHHHHHHHHHHHH-H--hCCCCHHHHHHHH
Confidence 344455688999999999999888544444445444444333 399999999999998 3 345 567888899
Q ss_pred HHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHH--HHhcCChhhHHHHHh
Q 012365 369 GACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKA--FLASGNRKSASKLLS 420 (465)
Q Consensus 369 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 420 (465)
.+|...|++++|.+.|++..+.. |.+...+..+..+ +.+.|++++|.+.++
T Consensus 82 ~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 82 ASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999873 5566677777766 888999999999999
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.12 E-value=2.6e-05 Score=57.90 Aligned_cols=96 Identities=11% Similarity=-0.064 Sum_probs=83.5
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHh
Q 012365 13 SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNV 92 (465)
Q Consensus 13 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 92 (465)
.+..+...+.+.|++++|+..|++..+.... +...+..+..++...|++++|...|++..+.. +.+...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3455667888999999999999999886433 78888889999999999999999999999876 457889999999999
Q ss_pred ccCCHHHHHHHHHHHHHc
Q 012365 93 KIKDFDSAYSLLDDLKEM 110 (465)
Q Consensus 93 ~~g~~~~a~~~~~~m~~~ 110 (465)
..|++++|...|++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999998864
No 172
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.11 E-value=1.3e-05 Score=75.47 Aligned_cols=122 Identities=7% Similarity=-0.036 Sum_probs=97.7
Q ss_pred HHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCC
Q 012365 17 LITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKD 96 (465)
Q Consensus 17 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 96 (465)
+...+.+.|++++|++.|++..+... -+...|..+..++.+.|++++|.+.+++..+.. +.+..++..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 34456778999999999999988643 368899999999999999999999999999875 5678899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHH
Q 012365 97 FDSAYSLLDDLKEMNLMPTASMYNAIMAG--YFRKKDVQGALMVLKE 141 (465)
Q Consensus 97 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~ 141 (465)
+++|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.+++
T Consensus 90 ~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 90 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999988764 3345566666655 8888999999999883
No 173
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.11 E-value=3.5e-06 Score=62.31 Aligned_cols=91 Identities=11% Similarity=0.063 Sum_probs=73.8
Q ss_pred CCchhhhHHhHHHHHhhcCC-CC-cHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhH
Q 012365 338 PPDVQIGLDLLQFIKDELGL-PP-SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSA 415 (465)
Q Consensus 338 ~~~~~~A~~~~~~m~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 415 (465)
.|++++|+..|++.. ..+. .| +...+..+..++...|++++|...|++..+. .|.+..++..+..+|...|++++|
T Consensus 3 ~g~~~~A~~~~~~al-~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAI-ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-FPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHH-HcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHcCCHHHH
Confidence 488999999999998 3321 24 4567788889999999999999999999987 377788999999999999999999
Q ss_pred HHHHhccCCCCCChh
Q 012365 416 SKLLSKMPKDDPHVR 430 (465)
Q Consensus 416 ~~~~~~m~~~~~~~~ 430 (465)
...+++.+...|...
T Consensus 81 ~~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 81 VELLLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHhCCCcH
Confidence 999999988766543
No 174
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.10 E-value=0.00011 Score=68.09 Aligned_cols=201 Identities=12% Similarity=0.023 Sum_probs=138.2
Q ss_pred HHHHhcccCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCC
Q 012365 18 ITYSCDLLKVHVALDVVEQMVQGELVPS----------------TETINSILHACEESYEFNLVRRIYPMICHHN-LKPN 80 (465)
Q Consensus 18 i~~~~~~g~~~~A~~~~~~m~~~~~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 80 (465)
...+.+.|++++|++.|..+.+...... ...+..+...|...|++++|.+.+..+.+.- -.++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3557789999999999999987532211 1247788899999999999999998876521 1122
Q ss_pred H----HHHHHHHHHHhccCCHHHHHHHHHHHHH----cCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 012365 81 S----ETFRSMISLNVKIKDFDSAYSLLDDLKE----MNLMP-TASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151 (465)
Q Consensus 81 ~----~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 151 (465)
. .+.+.+-..+...|+++.|..+++.... .+..+ -..++..+...+...|++++|..++++....-...+
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~- 169 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD- 169 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS-
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc-
Confidence 2 2334444455567899999999887643 22222 245778899999999999999999988763210000
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh-----cCCCCC--hHHHHHHHH
Q 012365 152 QTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA-----EIPVKS--RSEVKSALV 224 (465)
Q Consensus 152 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-----~~~~~~--~~~~~~~l~ 224 (465)
.-.....++..++..|...|++++|..++++. ....++ ....+..+.
T Consensus 170 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g 223 (434)
T 4b4t_Q 170 --------------------------DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSG 223 (434)
T ss_dssp --------------------------CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred --------------------------cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Confidence 00112356777888999999999999998762 122211 123466777
Q ss_pred HHHHcCCChhHHHHHHHHHHH
Q 012365 225 SALASHGRTSDAIIVYEEIKE 245 (465)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~m~~ 245 (465)
..+...|++++|...|.+..+
T Consensus 224 ~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 224 ILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 788889999999988877654
No 175
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.05 E-value=0.0011 Score=61.25 Aligned_cols=96 Identities=6% Similarity=-0.030 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHh-----cCC-CCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHc--CCCCC---
Q 012365 183 KYVFMALINAYTTCGEFEKARQVVLDA-----EIP-VKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA--GCNLE--- 251 (465)
Q Consensus 183 ~~~~~~l~~~~~~~g~~~~a~~~~~~~-----~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~p~--- 251 (465)
..++..+...|...|++++|..++++. ... ......++..++..|...|++++|..++++.... .+..+
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 214 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQT 214 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHH
Confidence 345556666667777777777666651 111 1222234666666666677777776666655432 11111
Q ss_pred -HHHHHHHHHHHHccCcHHHHHHHHHHH
Q 012365 252 -PRAVIALIEHLNSEGELNRLIQLLEEV 278 (465)
Q Consensus 252 -~~~~~~ll~~~~~~g~~~~a~~~~~~~ 278 (465)
...+..+...+...|++++|...+.+.
T Consensus 215 ~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 215 VAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 122333334445555555555554443
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.03 E-value=0.00022 Score=53.24 Aligned_cols=92 Identities=7% Similarity=-0.055 Sum_probs=56.5
Q ss_pred HHHHHhcccCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHHH
Q 012365 17 LITYSCDLLKVHVALDVVEQMVQGELVPST---ETINSILHACEESYEFNLVRRIYPMICHHNLKPN---SETFRSMISL 90 (465)
Q Consensus 17 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~ 90 (465)
+...+.+.|++++|.+.|+...+.... +. ..+..+..++...|++++|...++...+.. +.+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 444556667777777777776654322 22 355556666666777777777777666543 222 4556666666
Q ss_pred HhccCCHHHHHHHHHHHHHc
Q 012365 91 NVKIKDFDSAYSLLDDLKEM 110 (465)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~ 110 (465)
+...|++++|...|++....
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66677777777777666654
No 177
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.02 E-value=5.5e-05 Score=61.77 Aligned_cols=88 Identities=14% Similarity=-0.065 Sum_probs=57.7
Q ss_pred CCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHH-
Q 012365 338 PPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSAS- 416 (465)
Q Consensus 338 ~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~- 416 (465)
.|++++|+..+++.. .. ...+...+..+..++...|++++|...|++..+. .|.+...+..+..++...|+.+++.
T Consensus 101 ~~~~~~A~~~~~~al-~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~~~ 177 (198)
T 2fbn_A 101 NKDYPKAIDHASKVL-KI-DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL-NPNNLDIRNSYELCVNKLKEARKKDK 177 (198)
T ss_dssp TTCHHHHHHHHHHHH-HH-STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHHHHHC---
T ss_pred hcCHHHHHHHHHHHH-Hh-CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 388888888888887 32 1235667778888888899999999999988876 3667778888888888888887777
Q ss_pred HHHhccCCCCCC
Q 012365 417 KLLSKMPKDDPH 428 (465)
Q Consensus 417 ~~~~~m~~~~~~ 428 (465)
..+..|...+..
T Consensus 178 ~~~~~~f~~~~~ 189 (198)
T 2fbn_A 178 LTFGGMFDKGPL 189 (198)
T ss_dssp ------------
T ss_pred HHHHHHhcccch
Confidence 666666655443
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.02 E-value=7.6e-05 Score=69.78 Aligned_cols=123 Identities=12% Similarity=-0.029 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 012365 12 ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPS--------------TETINSILHACEESYEFNLVRRIYPMICHHNL 77 (465)
Q Consensus 12 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 77 (465)
..|..+-..+.+.|++++|+..|++..+...... ...|..+..++.+.|++++|...++...+..
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 3566666677777777777777777765322211 4566666666777777777777777766654
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 012365 78 KPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGAL 136 (465)
Q Consensus 78 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 136 (465)
+.+...|..+..+|...|++++|...|++..+.. +.+...+..+..++.+.++.+++.
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667777777777777777777766543 334555666666666666666554
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.00 E-value=4.1e-05 Score=59.79 Aligned_cols=134 Identities=10% Similarity=-0.013 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-C
Q 012365 11 SASYKKLITYSCDLLKVHVALDVVEQMVQGELV-PS----TETINSILHACEESYEFNLVRRIYPMICHH----NLKP-N 80 (465)
Q Consensus 11 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~ 80 (465)
..++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|.+.++...+. +.++ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 456788888899999999999999988653111 12 146777888889999999999999987653 1111 1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012365 81 SETFRSMISLNVKIKDFDSAYSLLDDLKEM----NLM-PTASMYNAIMAGYFRKKDVQGALMVLKEMEQ 144 (465)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 144 (465)
..++..+...+...|++++|...+++.... +.+ ....++..+...+...|++++|.+.+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456778888899999999999999887533 111 1245677888899999999999999988764
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.00 E-value=1.4e-05 Score=58.98 Aligned_cols=86 Identities=8% Similarity=-0.050 Sum_probs=53.5
Q ss_pred ccCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 012365 24 LLKVHVALDVVEQMVQGE--LVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAY 101 (465)
Q Consensus 24 ~g~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 101 (465)
.|++++|+..|++..+.+ -+-+...+..+..++...|++++|...+++..+.. +-+..++..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 466677777777776653 12234556666666777777777777777776654 345666666777777777777777
Q ss_pred HHHHHHHHc
Q 012365 102 SLLDDLKEM 110 (465)
Q Consensus 102 ~~~~~m~~~ 110 (465)
..|++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777766544
No 181
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.99 E-value=0.00088 Score=58.81 Aligned_cols=226 Identities=10% Similarity=-0.043 Sum_probs=143.9
Q ss_pred hcCCH-HHHHHHHHHh-cCCCCChHHHHHHHHHHHHcCCC----------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012365 195 TCGEF-EKARQVVLDA-EIPVKSRSEVKSALVSALASHGR----------TSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262 (465)
Q Consensus 195 ~~g~~-~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 262 (465)
+.|.+ ++|+++++.+ ...|... .+|+.--..+...+. +++++.+++.+.....+ +..+|+.--..+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~y-taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFA-TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCH-HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhH-HHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 44444 4678888774 3444443 346543333332222 57888888888887632 566666555556
Q ss_pred HccC--cHHHHHHHHHHHcCCCCC-ccchhhHhhHhhhcCC-hhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhh----
Q 012365 263 NSEG--ELNRLIQLLEEVHDPDYW-MDGCCRLILHCVRFKQ-LSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIA---- 334 (465)
Q Consensus 263 ~~~g--~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 334 (465)
.+.+ .+++++.+++.+.+..+. ..+++.-.......+. ++++++.++.+.+..+.+...|+.....+.....
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~ 198 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 198 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC--
T ss_pred hccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccc
Confidence 6666 478888988888765432 3345444444455666 5899999999998777787777665443333211
Q ss_pred ----cCCCCchhhhHHhHHHHHhhcCCCC-cHHHHHHHHHHhHhh-----------hhhhHHHHHHHHHHHcCCCCChhH
Q 012365 335 ----TTDPPDVQIGLDLLQFIKDELGLPP-SRKCLDFLLGACVNA-----------RDLKRAHLIWKEYENAGLPYNVLS 398 (465)
Q Consensus 335 ----~~~~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~~ 398 (465)
....+.++++++.+.... ...| |...|+-+-..+.+. +.++++++.++++.+. .||. .
T Consensus 199 ~~~~~~~~~~~~eEle~~~~ai---~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~-~ 272 (331)
T 3dss_A 199 GPQGRLPENVLLKELELVQNAF---FTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN-K 272 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHH---HHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC-H
T ss_pred ccccccchHHHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc-c
Confidence 111156888999998888 3445 566666554444444 6788999999999986 4554 3
Q ss_pred HHHHHHH-----HHhcCChhhHHHHHhccCCCCCC
Q 012365 399 YLWMYKA-----FLASGNRKSASKLLSKMPKDDPH 428 (465)
Q Consensus 399 ~~~l~~~-----~~~~g~~~~A~~~~~~m~~~~~~ 428 (465)
|..+..+ ....|..+++...++++.+.||.
T Consensus 273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 273 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 4332222 22457788999999999988883
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.99 E-value=9e-05 Score=67.03 Aligned_cols=123 Identities=8% Similarity=-0.010 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 012365 12 ASYKKLITYSCDLLKVHVALDVVEQMVQG---------------ELVPSTETINSILHACEESYEFNLVRRIYPMICHHN 76 (465)
Q Consensus 12 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~---------------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 76 (465)
..|..+-..+.+.|++++|++.|++..+. --+.+...|..+..++.+.|++++|.+.+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 34667777788888888888888887651 011134556666666777777777777777777654
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 012365 77 LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGAL 136 (465)
Q Consensus 77 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 136 (465)
+.+...+..+..+|...|++++|...|++..+.. +.+...+..+...+...++.+++.
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777777777766553 334555555555555555555443
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.92 E-value=0.00022 Score=53.26 Aligned_cols=94 Identities=7% Similarity=0.033 Sum_probs=78.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 012365 50 NSILHACEESYEFNLVRRIYPMICHHNLKPNS---ETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPT---ASMYNAIM 123 (465)
Q Consensus 50 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li 123 (465)
..+...+...|++++|...|+.+.+.. +.+. ..+..+..++.+.|++++|...|++..... +.+ ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 345667788999999999999998854 2233 577888899999999999999999998764 333 67788889
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 012365 124 AGYFRKKDVQGALMVLKEMEQA 145 (465)
Q Consensus 124 ~~~~~~g~~~~a~~~~~~m~~~ 145 (465)
.++...|++++|...|++..+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998864
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.85 E-value=0.0002 Score=56.11 Aligned_cols=64 Identities=11% Similarity=0.018 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 012365 81 SETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQA 145 (465)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 145 (465)
..+|..+..+|.+.|++++|...+++....+ +.+...|..+..+|...|++++|...|++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3566666667777777777777777766654 445666777777777777777777777766653
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.84 E-value=0.00025 Score=55.63 Aligned_cols=100 Identities=7% Similarity=-0.028 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHhC--------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 012365 11 SASYKKLITYSCDLLKVHVALDVVEQMVQG--------E---------LVPSTETINSILHACEESYEFNLVRRIYPMIC 73 (465)
Q Consensus 11 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~--------~---------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 73 (465)
...+...-..+.+.|++++|+..|....+. . -+.+...|..+..++.+.|++++|...++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456778888999999999999999998764 1 01134678888889999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 012365 74 HHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMN 111 (465)
Q Consensus 74 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 111 (465)
+.. +.+...|..+..+|...|++++|...|++.....
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 875 5678999999999999999999999999988764
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.83 E-value=6.6e-05 Score=67.11 Aligned_cols=95 Identities=9% Similarity=-0.028 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHH------------------HHHHHHHHHHhcCCHHHHHHHHHHH
Q 012365 11 SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTE------------------TINSILHACEESYEFNLVRRIYPMI 72 (465)
Q Consensus 11 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------------------~~~~ll~~~~~~~~~~~a~~~~~~~ 72 (465)
...|..+-..+.+.|++++|+..|++..+. .|+.. .|..+..++.+.|++++|...++..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345666777778888888888888887764 23332 3333444444444444444444444
Q ss_pred hhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 012365 73 CHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLK 108 (465)
Q Consensus 73 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 108 (465)
.+.. +.+...|..+..+|...|++++|...|++..
T Consensus 257 l~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al 291 (338)
T 2if4_A 257 LTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291 (338)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4332 2234444444444444444444444444443
No 187
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.81 E-value=0.00092 Score=50.68 Aligned_cols=113 Identities=9% Similarity=0.006 Sum_probs=95.1
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhc----cCCHHH
Q 012365 24 LLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVK----IKDFDS 99 (465)
Q Consensus 24 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~ 99 (465)
.+++++|++.|++..+.|. |+.. |-..+...+.+++|.+.|++..+.| ++..+..|-..|.. .+++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 4678999999999999883 3433 6666667788899999999999876 67888888888887 899999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 012365 100 AYSLLDDLKEMNLMPTASMYNAIMAGYFR----KKDVQGALMVLKEMEQANV 147 (465)
Q Consensus 100 a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~ 147 (465)
|..+|++..+.| +...+..|...|.. .++.++|.+.|++..+.|.
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999998865 67888889888988 8999999999999988764
No 188
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.81 E-value=9.9e-05 Score=57.51 Aligned_cols=86 Identities=10% Similarity=-0.077 Sum_probs=61.0
Q ss_pred CchhhhHHhHHHHHhhc---CCCC-cHHHHHHHHHHhHhhhhhhHHHHHHHHHHHc----CCCC-ChhHHHHHHHHHHhc
Q 012365 339 PDVQIGLDLLQFIKDEL---GLPP-SRKCLDFLLGACVNARDLKRAHLIWKEYENA----GLPY-NVLSYLWMYKAFLAS 409 (465)
Q Consensus 339 ~~~~~A~~~~~~m~~~~---~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~ 409 (465)
|++++|...+++..... +..+ ....+..+...+...|++++|...+++..+. +.++ ...++..+...|...
T Consensus 63 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 142 (164)
T 3ro3_A 63 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 142 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHc
Confidence 77777777776655211 1111 1346677888899999999999999988754 2111 134678888999999
Q ss_pred CChhhHHHHHhccCC
Q 012365 410 GNRKSASKLLSKMPK 424 (465)
Q Consensus 410 g~~~~A~~~~~~m~~ 424 (465)
|++++|.+.+++..+
T Consensus 143 g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 143 GNHDQAMHFAEKHLE 157 (164)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999987653
No 189
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.78 E-value=2.9e-05 Score=72.65 Aligned_cols=91 Identities=13% Similarity=-0.031 Sum_probs=69.4
Q ss_pred CchhhhHHhHHHHHhhcCCCCc-------------HHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 012365 339 PDVQIGLDLLQFIKDELGLPPS-------------RKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKA 405 (465)
Q Consensus 339 ~~~~~A~~~~~~m~~~~~~~p~-------------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 405 (465)
|++++|+..|++......-.++ ...|..+..+|.+.|++++|...+++..+.. |.+...|..+..+
T Consensus 282 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a 360 (457)
T 1kt0_A 282 GKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEA 360 (457)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHH
Confidence 8888888888887721222111 4677788888889999999999999998873 6678888899999
Q ss_pred HHhcCChhhHHHHHhccCCCCCChh
Q 012365 406 FLASGNRKSASKLLSKMPKDDPHVR 430 (465)
Q Consensus 406 ~~~~g~~~~A~~~~~~m~~~~~~~~ 430 (465)
|...|++++|...|++.++.+|...
T Consensus 361 ~~~~g~~~~A~~~~~~al~l~P~~~ 385 (457)
T 1kt0_A 361 QLLMNEFESAKGDFEKVLEVNPQNK 385 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC----
T ss_pred HHHccCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999988887543
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.75 E-value=0.00015 Score=67.91 Aligned_cols=124 Identities=4% Similarity=-0.021 Sum_probs=90.2
Q ss_pred HhcccCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCC-CCC-HHHHHH
Q 012365 21 SCDLLKVHVALDVVEQMVQG---ELVP----STETINSILHACEESYEFNLVRRIYPMICH-----HNL-KPN-SETFRS 86 (465)
Q Consensus 21 ~~~~g~~~~A~~~~~~m~~~---~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~-~~~-~~~~~~ 86 (465)
+...|++++|+.++++.++. -..| ...+++.|..+|...|++++|..++++..+ .|- .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 55789999999999887542 1222 246788888899999999999998888764 221 222 457888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012365 87 MISLNVKIKDFDSAYSLLDDLKEM---NLMPT----ASMYNAIMAGYFRKKDVQGALMVLKEMEQ 144 (465)
Q Consensus 87 li~~~~~~g~~~~a~~~~~~m~~~---~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 144 (465)
|...|...|++++|+.++++..+. -+-|+ ..+.+.+-.++...+.+++|+.+|..+++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988876432 11122 33455666777788889999999988875
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.70 E-value=0.00052 Score=62.03 Aligned_cols=73 Identities=15% Similarity=0.014 Sum_probs=33.3
Q ss_pred CchhhhHHhHHHHHhhcCCCC-cHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhH
Q 012365 339 PDVQIGLDLLQFIKDELGLPP-SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSA 415 (465)
Q Consensus 339 ~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 415 (465)
|++++|+..+++.. ...| +...|..+..+|...|++++|...|++..+. .|.+...+..+..++.+.++.+++
T Consensus 287 g~~~~A~~~~~~al---~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l-~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 287 SDWQGAVDSCLEAL---EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-APEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TCHHHHHHHHHHHH---TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554444 2223 2334444444455555555555555555443 133444444444444444444444
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.70 E-value=0.00072 Score=51.92 Aligned_cols=95 Identities=9% Similarity=-0.029 Sum_probs=65.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCC------CCH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHc-------
Q 012365 49 INSILHACEESYEFNLVRRIYPMICHHNLK------PNS-----ETFRSMISLNVKIKDFDSAYSLLDDLKEM------- 110 (465)
Q Consensus 49 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~------- 110 (465)
+......+...|++++|...|+...+..-. .+. ..|+.+..++.+.|++++|...+++....
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 334444455566666666666665553211 022 37778888888888888888888877765
Q ss_pred CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 012365 111 NLMPTASMY----NAIMAGYFRKKDVQGALMVLKEMEQ 144 (465)
Q Consensus 111 ~~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 144 (465)
+ +-+...| .....++...|++++|+..|++..+
T Consensus 94 ~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 N-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp T-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3 3345677 8888899999999999999998764
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.64 E-value=0.00079 Score=51.73 Aligned_cols=98 Identities=9% Similarity=-0.117 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCC------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHhhC-----
Q 012365 12 ASYKKLITYSCDLLKVHVALDVVEQMVQGELVP------ST-----ETINSILHACEESYEFNLVRRIYPMICHH----- 75 (465)
Q Consensus 12 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p------~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----- 75 (465)
..+...-..+.+.|++++|++.|++..+..... +. ..|..+..++.+.|++++|+..++..++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 445666777888999999999999998743221 22 38888999999999999999999999885
Q ss_pred --CCCCCHHHH----HHHHHHHhccCCHHHHHHHHHHHHHc
Q 012365 76 --NLKPNSETF----RSMISLNVKIKDFDSAYSLLDDLKEM 110 (465)
Q Consensus 76 --~~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~~ 110 (465)
. +-+...| .....++...|++++|...|++..+.
T Consensus 92 e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 92 ELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4 3346678 88999999999999999999988653
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.64 E-value=0.00031 Score=65.64 Aligned_cols=130 Identities=9% Similarity=0.034 Sum_probs=84.7
Q ss_pred HhccCCHHHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCC
Q 012365 91 NVKIKDFDSAYSLLDDLKEMN---LMP----TASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN 163 (465)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~---~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 163 (465)
+...|++++|+.++++..+.. +.| ...+++.|...|...|++++|..++++..+.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i------------------ 380 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG------------------ 380 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH------------------
Confidence 457799999999988765431 112 2467899999999999999999999886531
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh--------cCCCCChHHHHHHHHHHHHcCCChhH
Q 012365 164 EEDIIKYYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDA--------EIPVKSRSEVKSALVSALASHGRTSD 235 (465)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~ 235 (465)
++...-...+-...+++.|...|...|++++|+.++++. +...+....+.+.+-.++...+.+++
T Consensus 381 -------~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ 453 (490)
T 3n71_A 381 -------YMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQ 453 (490)
T ss_dssp -------HHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111112456777788888888888888887651 11222222235566666767777777
Q ss_pred HHHHHHHHHH
Q 012365 236 AIIVYEEIKE 245 (465)
Q Consensus 236 a~~~~~~m~~ 245 (465)
|..++..+++
T Consensus 454 ae~~~~~~~~ 463 (490)
T 3n71_A 454 NEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777755
No 195
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.61 E-value=0.00014 Score=55.73 Aligned_cols=93 Identities=11% Similarity=0.034 Sum_probs=74.4
Q ss_pred CchhhhHHhHHHHHhhcCCCC-cHHHHHHHHHHhHhhhhh----------hHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 012365 339 PDVQIGLDLLQFIKDELGLPP-SRKCLDFLLGACVNARDL----------KRAHLIWKEYENAGLPYNVLSYLWMYKAFL 407 (465)
Q Consensus 339 ~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~~----------~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 407 (465)
+.+++|++.++... ...| +...|..+..++...+++ ++|+..|++..+.. |.+..+|..+..+|.
T Consensus 16 ~~feeA~~~~~~Ai---~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 16 LLFEQIRQDAENTY---KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 56788888888887 3445 667777777788887765 59999999999973 667789999999999
Q ss_pred hcC-----------ChhhHHHHHhccCCCCCChhHHHHH
Q 012365 408 ASG-----------NRKSASKLLSKMPKDDPHVRFVIQA 435 (465)
Q Consensus 408 ~~g-----------~~~~A~~~~~~m~~~~~~~~~~l~~ 435 (465)
..| ++++|.+.|++.++.+|.......+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a 130 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS 130 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 875 8999999999999988876444433
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.58 E-value=0.00036 Score=50.92 Aligned_cols=81 Identities=11% Similarity=0.050 Sum_probs=68.7
Q ss_pred hhHHhHHHHHhhcCCCC-cHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhc
Q 012365 343 IGLDLLQFIKDELGLPP-SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSK 421 (465)
Q Consensus 343 ~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 421 (465)
.|+..|++.. ...| +...+..+...+...|++++|...|++..+.. |.+...|..+..+|...|++++|...+++
T Consensus 3 ~a~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAML---AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHH---TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHH---HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4667777776 3445 56788889999999999999999999999873 66788999999999999999999999999
Q ss_pred cCCCCC
Q 012365 422 MPKDDP 427 (465)
Q Consensus 422 m~~~~~ 427 (465)
..+..+
T Consensus 79 al~~~~ 84 (115)
T 2kat_A 79 GLAAAQ 84 (115)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 887554
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.00041 Score=50.03 Aligned_cols=69 Identities=12% Similarity=0.016 Sum_probs=50.7
Q ss_pred cHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCCh
Q 012365 360 SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHV 429 (465)
Q Consensus 360 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 429 (465)
+...+..+...+...|++++|...|++..+. .|.+...|..+..+|.+.|++++|.+.+++.++.+|..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA-QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 4456666777777778888888888877776 35567777777777888888888888888777766654
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.00042 Score=49.95 Aligned_cols=91 Identities=7% Similarity=-0.094 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC------HHH
Q 012365 10 SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPN------SET 83 (465)
Q Consensus 10 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~ 83 (465)
+...|..+...+.+.|++++|++.|++..+... .+...+..+..++...|++++|.+.++...+.. +.+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHH
Confidence 455666666677777777777777777666432 255666666666677777777777777766543 222 334
Q ss_pred HHHHHHHHhccCCHHHHHH
Q 012365 84 FRSMISLNVKIKDFDSAYS 102 (465)
Q Consensus 84 ~~~li~~~~~~g~~~~a~~ 102 (465)
+..+..++...|+.+.|..
T Consensus 81 ~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHhHhhhHh
Confidence 4444444444444444433
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.56 E-value=0.00069 Score=49.38 Aligned_cols=77 Identities=10% Similarity=0.026 Sum_probs=41.8
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012365 65 VRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME 143 (465)
Q Consensus 65 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 143 (465)
+.+.|+...+.. +.+...+..+...|...|++++|...|++..... +.+...|..+..++...|++++|...|++..
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344455444433 3345555555555555666666666665555443 3345555555556666666666666665554
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.53 E-value=0.0012 Score=45.39 Aligned_cols=62 Identities=15% Similarity=0.168 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 012365 48 TINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEM 110 (465)
Q Consensus 48 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 110 (465)
.+..+...+...|++++|...++...+.. +.+...+..+..++.+.|++++|...|++....
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444445555555555555544432 233444455555555555555555555554443
No 201
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.49 E-value=0.0023 Score=61.30 Aligned_cols=171 Identities=7% Similarity=-0.071 Sum_probs=110.0
Q ss_pred ChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCc----------HHHHHHHHHHHcCCCCC-ccchhhHhhHhhhcC
Q 012365 232 RTSDAIIVYEEIKEAGCNLEPR-AVIALIEHLNSEGE----------LNRLIQLLEEVHDPDYW-MDGCCRLILHCVRFK 299 (465)
Q Consensus 232 ~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 299 (465)
..++|++.++++...+ |+.. .|+.--.++.+.|+ ++++++.++.+.+..+. ...|..-.....+.+
T Consensus 44 ~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 3446677777777665 4433 33332333333333 67777777776654432 234444344444556
Q ss_pred --ChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCC-chhhhHHhHHHHHhhcCCCC-cHHHHHHHHHHhHhh-
Q 012365 300 --QLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPP-DVQIGLDLLQFIKDELGLPP-SRKCLDFLLGACVNA- 374 (465)
Q Consensus 300 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~- 374 (465)
+++++++.++++.+..+.+...|+.--..+... | .++++++.++++. ...| |...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l------~~~~~~el~~~~~~I---~~~p~n~saW~~r~~ll~~l~ 192 (567)
T 1dce_A 122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQA------AVAPAEELAFTDSLI---TRNFSNYSSWHYRSCLLPQLH 192 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------CCCHHHHHHHHHTTT---TTTCCCHHHHHHHHHHHHHHS
T ss_pred cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHc------CCChHHHHHHHHHHH---HHCCCCccHHHHHHHHHHhhc
Confidence 568888888888887777777776543322222 5 6788888888887 3444 566676655555442
Q ss_pred -------------hhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhh
Q 012365 375 -------------RDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKS 414 (465)
Q Consensus 375 -------------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 414 (465)
+.++++.+.+++.... .|-|...|..+...+.+.++.++
T Consensus 193 ~~~~~~~~~~~~~~~~~eel~~~~~ai~~-~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 193 PQPDSGPQGRLPENVLLKELELVQNAFFT-DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCCCSSSCCSSCHHHHHHHHHHHHHHHHH-CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccccccHHHHHHHHHHHHHHHhh-CCCCccHHHHHHHHHhcCCCccc
Confidence 7789999999999987 37788899998888888888666
No 202
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.48 E-value=0.00028 Score=62.97 Aligned_cols=92 Identities=12% Similarity=0.021 Sum_probs=72.7
Q ss_pred CCCchhhhHHhHHHHHhhcCCCCcHH------------------HHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhH
Q 012365 337 DPPDVQIGLDLLQFIKDELGLPPSRK------------------CLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLS 398 (465)
Q Consensus 337 ~~~~~~~A~~~~~~m~~~~~~~p~~~------------------~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 398 (465)
..|++++|+..|++.. ...|+.. .|..+..++.+.|++++|...+++..+.. +.+...
T Consensus 191 ~~g~~~~A~~~y~~Al---~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a 266 (338)
T 2if4_A 191 KEEKLEEAMQQYEMAI---AYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKA 266 (338)
T ss_dssp SSSCCHHHHHHHHHHH---HHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHH
T ss_pred hcCCHHHHHHHHHHHH---HHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 3588899998888877 3445543 77888889999999999999999999873 668889
Q ss_pred HHHHHHHHHhcCChhhHHHHHhccCCCCCChhHH
Q 012365 399 YLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFV 432 (465)
Q Consensus 399 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 432 (465)
|..+..+|...|++++|...|++.++.+|.....
T Consensus 267 ~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a 300 (338)
T 2if4_A 267 LFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAI 300 (338)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHH
Confidence 9999999999999999999999999988865433
No 203
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.47 E-value=0.0078 Score=57.63 Aligned_cols=118 Identities=8% Similarity=-0.040 Sum_probs=92.4
Q ss_pred cCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhcc
Q 012365 25 LKVHVALDVVEQMVQGELVPSTETINSILHACEESYE----------FNLVRRIYPMICHHNLKPNSETFRSMISLNVKI 94 (465)
Q Consensus 25 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 94 (465)
...++|++.++.+.+.... +...|+.--.++...|+ ++++.+.++.+.+.. +-+..+|+.-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3456889999999886544 56677766666666666 888999999988876 56788888888888888
Q ss_pred C--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHC
Q 012365 95 K--DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK-DVQGALMVLKEMEQA 145 (465)
Q Consensus 95 g--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~ 145 (465)
+ +++++.+.++++.+.+ +.+..+|+.-...+.+.| .++++++.++++.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~ 173 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 173 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 8 6699999999998876 578888888887778888 788888888887754
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.44 E-value=0.0014 Score=45.08 Aligned_cols=83 Identities=11% Similarity=0.066 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 012365 10 SSASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMIS 89 (465)
Q Consensus 10 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 89 (465)
+...|..+...+.+.|++++|+..|++..+... .+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 356788888899999999999999999987643 367888889999999999999999999998865 456777777666
Q ss_pred HHhcc
Q 012365 90 LNVKI 94 (465)
Q Consensus 90 ~~~~~ 94 (465)
++.+.
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 65543
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.36 E-value=0.00086 Score=51.41 Aligned_cols=87 Identities=9% Similarity=0.049 Sum_probs=51.9
Q ss_pred hcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH----------HHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 012365 22 CDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFN----------LVRRIYPMICHHNLKPNSETFRSMISLN 91 (465)
Q Consensus 22 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~----------~a~~~~~~~~~~~~~~~~~~~~~li~~~ 91 (465)
.+.+.+++|++.++...+.... +...|..+..++...++++ +|+..|++.++.. +-+..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 3456677888888877776433 6777777777777666543 6666666665554 33455566666655
Q ss_pred hccC-----------CHHHHHHHHHHHHHc
Q 012365 92 VKIK-----------DFDSAYSLLDDLKEM 110 (465)
Q Consensus 92 ~~~g-----------~~~~a~~~~~~m~~~ 110 (465)
...| ++++|.+.|++..+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 5543 455555555544443
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.31 E-value=0.00087 Score=47.45 Aligned_cols=67 Identities=13% Similarity=0.064 Sum_probs=59.0
Q ss_pred cHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCC
Q 012365 360 SRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDP 427 (465)
Q Consensus 360 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 427 (465)
+...+..+..++...|++++|...|++..+.. |.+...|..+..+|...|++++|.+.+++.++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 56678888899999999999999999999874 66788999999999999999999999999876443
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.16 E-value=0.0031 Score=44.54 Aligned_cols=63 Identities=16% Similarity=0.128 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012365 80 NSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME 143 (465)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 143 (465)
+...+..+..+|...|++++|...|++..+.+ +.+...|..+..+|...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555566666666666666666655543 3345556666666666666666666665554
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.15 E-value=0.022 Score=42.87 Aligned_cols=80 Identities=15% Similarity=0.118 Sum_probs=64.2
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHH
Q 012365 59 SYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR----KKDVQG 134 (465)
Q Consensus 59 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~ 134 (465)
.+++++|.+.|+...+.| .|+.. |-..|..-+.+++|.+.|++..+.| +...+..|...|.. .++.++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 357889999999999888 44444 6677777788888999999988865 67788888888887 789999
Q ss_pred HHHHHHHHHHCC
Q 012365 135 ALMVLKEMEQAN 146 (465)
Q Consensus 135 a~~~~~~m~~~~ 146 (465)
|++.|++..+.|
T Consensus 80 A~~~~~~Aa~~g 91 (138)
T 1klx_A 80 AAQYYSKACGLN 91 (138)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC
Confidence 999998887654
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.03 E-value=0.00092 Score=47.05 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=36.9
Q ss_pred HHhHhhhhhhHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCChhhHHHHHhccCCCCCCh
Q 012365 369 GACVNARDLKRAHLIWKEYENAGLPYNVL-SYLWMYKAFLASGNRKSASKLLSKMPKDDPHV 429 (465)
Q Consensus 369 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 429 (465)
..+...|++++|...+++..+. .|.+.. .+..+..+|...|++++|.+.|++.++.+|..
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQT-EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH-CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 3445566666666666666654 244455 66666666666666666666666666655544
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.01 E-value=0.02 Score=50.56 Aligned_cols=75 Identities=8% Similarity=-0.017 Sum_probs=65.2
Q ss_pred CCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCChhHHHH
Q 012365 358 PPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQ 434 (465)
Q Consensus 358 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l~ 434 (465)
..++.+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++....+|..++..-
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHHH
Confidence 5577788888777777899999999999999975 88888888899999999999999999999999998765443
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.00 E-value=0.02 Score=50.60 Aligned_cols=149 Identities=11% Similarity=-0.010 Sum_probs=102.1
Q ss_pred CCCCCHHHHHHHHHHHhc--c---cCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cC--CHHHH---HHHHHHH
Q 012365 6 EITPSSASYKKLITYSCD--L---LKVHVALDVVEQMVQGELVPSTETINSILHACEE---SY--EFNLV---RRIYPMI 72 (465)
Q Consensus 6 ~~~p~~~~y~~li~~~~~--~---g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~---~~--~~~~a---~~~~~~~ 72 (465)
+.+.|...|...+++... . .+..+|..+|++..+..+. ....|..+.-++.- .+ ..... ...++..
T Consensus 189 ~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 189 ILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp HSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 355677888888877643 2 3468999999999886432 34555544444321 11 11111 1122221
Q ss_pred hh-CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 012365 73 CH-HNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDS 151 (465)
Q Consensus 73 ~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 151 (465)
.. ...+.++.+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++.... .|..
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~ 343 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGA 343 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCc
Confidence 11 1225678888888877888899999999999999885 88888888889999999999999999988864 5777
Q ss_pred HHHHHHHH
Q 012365 152 QTFSYLIH 159 (465)
Q Consensus 152 ~~~~~ll~ 159 (465)
.||...-.
T Consensus 344 ~t~~~~~~ 351 (372)
T 3ly7_A 344 NTLYWIEN 351 (372)
T ss_dssp HHHHHHHH
T ss_pred ChHHHHhC
Confidence 77655444
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.95 E-value=0.0036 Score=43.39 Aligned_cols=69 Identities=10% Similarity=0.015 Sum_probs=57.8
Q ss_pred CcHHHHHHHHHHhHhhhh---hhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCC
Q 012365 359 PSRKCLDFLLGACVNARD---LKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPH 428 (465)
Q Consensus 359 p~~~~~~~ll~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 428 (465)
+++..+..+..++...++ .++|..++++..+.. |.++..+..+...+.+.|++++|...|+++++.+|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 466677777777655544 789999999999974 778889999999999999999999999999987774
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.85 E-value=0.0025 Score=48.27 Aligned_cols=89 Identities=13% Similarity=0.075 Sum_probs=69.7
Q ss_pred CchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhh---hhhHHHHHHHHHHHcCCCC--ChhHHHHHHHHHHhcCChh
Q 012365 339 PDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNAR---DLKRAHLIWKEYENAGLPY--NVLSYLWMYKAFLASGNRK 413 (465)
Q Consensus 339 ~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~ 413 (465)
..+..+.+-|.+.. ..+. ++..+.-.+.+++++.+ +++++..++++..+.+ .| +...+-.|.-+|.+.|+++
T Consensus 12 ~~l~~~~~~y~~e~-~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 12 EDLLKFEKKFQSEK-AAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHH-HTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHH-ccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHH
Confidence 34455566666655 3333 67777778888888877 7889999999999874 34 4567777888999999999
Q ss_pred hHHHHHhccCCCCCChh
Q 012365 414 SASKLLSKMPKDDPHVR 430 (465)
Q Consensus 414 ~A~~~~~~m~~~~~~~~ 430 (465)
+|.++++.+++.+|.+.
T Consensus 89 ~A~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 89 KALKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHhcCCCCH
Confidence 99999999999999774
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.80 E-value=0.0021 Score=59.03 Aligned_cols=87 Identities=11% Similarity=0.082 Sum_probs=67.6
Q ss_pred CCchhhhHHhHHHHHhh--cCCC---Cc-HHHHHHHHHHhHhhhhhhHHHHHHHHHHHc-----C--CCCChhHHHHHHH
Q 012365 338 PPDVQIGLDLLQFIKDE--LGLP---PS-RKCLDFLLGACVNARDLKRAHLIWKEYENA-----G--LPYNVLSYLWMYK 404 (465)
Q Consensus 338 ~~~~~~A~~~~~~m~~~--~~~~---p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-----g--~~p~~~~~~~l~~ 404 (465)
.|++++|+.++++.... .-+. |+ ..+++.|..+|..+|++++|..++++..+. | .|....+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 47888888888876621 1222 32 367889999999999999999999998742 2 1223348999999
Q ss_pred HHHhcCChhhHHHHHhccCC
Q 012365 405 AFLASGNRKSASKLLSKMPK 424 (465)
Q Consensus 405 ~~~~~g~~~~A~~~~~~m~~ 424 (465)
.|...|++++|..++++.++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999998775
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.58 E-value=0.0068 Score=55.64 Aligned_cols=62 Identities=13% Similarity=0.137 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHc-----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012365 82 ETFRSMISLNVKIKDFDSAYSLLDDLKEM-----N-LMP-TASMYNAIMAGYFRKKDVQGALMVLKEME 143 (465)
Q Consensus 82 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 143 (465)
.+++.|..+|...|++++|+.++++..+. | -.| ...+++.|...|...|++++|+.++++..
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 45556666666666666666665554321 1 011 13346666666666666666666666554
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.44 E-value=0.016 Score=53.25 Aligned_cols=92 Identities=10% Similarity=0.053 Sum_probs=62.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCC---CCC----CHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-----C-CCC-CHHH
Q 012365 53 LHACEESYEFNLVRRIYPMICHHN---LKP----NSETFRSMISLNVKIKDFDSAYSLLDDLKEM-----N-LMP-TASM 118 (465)
Q Consensus 53 l~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~~-~~~~ 118 (465)
+..+...|++++|+.++++..+.. +.| ...+++.|..+|...|++++|+.++++.... | -.| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556778888888888776521 122 2457778888888888888888888766432 2 112 2456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012365 119 YNAIMAGYFRKKDVQGALMVLKEMEQ 144 (465)
Q Consensus 119 ~~~li~~~~~~g~~~~a~~~~~~m~~ 144 (465)
++.|...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77888888888888888888887653
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.40 E-value=0.021 Score=39.78 Aligned_cols=52 Identities=10% Similarity=0.056 Sum_probs=21.6
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 012365 57 EESYEFNLVRRIYPMICHHNLKPNSE-TFRSMISLNVKIKDFDSAYSLLDDLKE 109 (465)
Q Consensus 57 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~ 109 (465)
...|++++|.+.++...+.. +.+.. .+..+..+|...|++++|...|++..+
T Consensus 11 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 11 INQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33444444444444444332 22333 444444444444444444444444433
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.39 E-value=0.013 Score=41.68 Aligned_cols=78 Identities=15% Similarity=-0.008 Sum_probs=59.8
Q ss_pred cHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcC------CCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCChhHHH
Q 012365 360 SRKCLDFLLGACVNARDLKRAHLIWKEYENAG------LPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVI 433 (465)
Q Consensus 360 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l 433 (465)
+..-+-.+...+.+.|++..|...|++..+.- -.+....+..|..+|.+.|++++|..++++.++.+|.....+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 33444567777888999999999998887641 134556888999999999999999999999998888776665
Q ss_pred HHHH
Q 012365 434 QACK 437 (465)
Q Consensus 434 ~~~~ 437 (465)
....
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5443
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.36 E-value=0.018 Score=52.84 Aligned_cols=92 Identities=12% Similarity=0.033 Sum_probs=60.8
Q ss_pred HHHHhcccCHHHHHHHHHHHHhCC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CC-CCCC-HHH
Q 012365 18 ITYSCDLLKVHVALDVVEQMVQGE---LVP----STETINSILHACEESYEFNLVRRIYPMICH-----HN-LKPN-SET 83 (465)
Q Consensus 18 i~~~~~~g~~~~A~~~~~~m~~~~---~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~-~~~~-~~~ 83 (465)
+..+.+.|++++|++++++..+.. ..| ...+++.+..+|...|++++|+.++++..+ .| ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445556778888888887776421 122 235677777777778888888888777664 22 1222 346
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHH
Q 012365 84 FRSMISLNVKIKDFDSAYSLLDDLKE 109 (465)
Q Consensus 84 ~~~li~~~~~~g~~~~a~~~~~~m~~ 109 (465)
++.|...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77777778888888888877777665
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.84 E-value=0.091 Score=36.18 Aligned_cols=65 Identities=11% Similarity=0.040 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHhccCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012365 79 PNSETFRSMISLNVKIKD---FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQ 144 (465)
Q Consensus 79 ~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 144 (465)
.|+..+..+..++...++ .++|..++++..+.+ +-++.....+...+.+.|++++|+..|+++.+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444444444433322 455555555555543 34455555555555566666666666666554
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.81 E-value=0.34 Score=48.68 Aligned_cols=152 Identities=16% Similarity=0.265 Sum_probs=92.8
Q ss_pred HHhcccCHHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHH
Q 012365 20 YSCDLLKVHVALD-VVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFD 98 (465)
Q Consensus 20 ~~~~~g~~~~A~~-~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 98 (465)
.....+++++|.+ ++.. + |+......++..+.+.|.++.|.++.+ +.. .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCCHH
Confidence 3345889999977 5522 1 112334677788888999999887653 111 1133456789999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcC
Q 012365 99 SAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAG 178 (465)
Q Consensus 99 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 178 (465)
.|.++.+.+ .+...|..+...+.+.|+++.|.+.|..+.+ ......+.....+.+.+.++.+.....|
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999986433 4678999999999999999999999998753 2222222222333333333333333333
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012365 179 GQITKYVFMALINAYTTCGEFEKARQVVL 207 (465)
Q Consensus 179 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 207 (465)
- ++....+|.+.|++++|.+++.
T Consensus 738 ~------~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 738 K------FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp C------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred c------hHHHHHHHHHcCCHHHHHHHHH
Confidence 1 2333344555555555555554
No 222
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.52 E-value=0.057 Score=39.27 Aligned_cols=88 Identities=14% Similarity=0.025 Sum_probs=63.1
Q ss_pred chhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhh---HHHHHHHHHHHcCCCC--ChhHHHHHHHHHHhcCChhh
Q 012365 340 DVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLK---RAHLIWKEYENAGLPY--NVLSYLWMYKAFLASGNRKS 414 (465)
Q Consensus 340 ~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~---~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~ 414 (465)
.+..+.+-|.+.. ..+. |+..+--.+.+++.+..+.. ++..+++++.+.+ .| .....-.|.-++.+.|++++
T Consensus 16 ~l~~~~~~y~~e~-~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 16 DLLKFEKKFQSEK-AAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHH-HHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHh-ccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 3444555555554 3333 66766667777877766544 5889999988764 23 33455667779999999999
Q ss_pred HHHHHhccCCCCCChh
Q 012365 415 ASKLLSKMPKDDPHVR 430 (465)
Q Consensus 415 A~~~~~~m~~~~~~~~ 430 (465)
|.++++.+++..|.+.
T Consensus 93 A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNN 108 (126)
T ss_dssp HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHhCCCCH
Confidence 9999999999999774
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.48 E-value=0.46 Score=47.73 Aligned_cols=24 Identities=13% Similarity=-0.085 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHH
Q 012365 253 RAVIALIEHLNSEGELNRLIQLLE 276 (465)
Q Consensus 253 ~~~~~ll~~~~~~g~~~~a~~~~~ 276 (465)
..|..+...+.+.++++.|.+.|.
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~ 705 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFT 705 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHH
Confidence 333344444444444444443333
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.47 E-value=0.15 Score=35.85 Aligned_cols=66 Identities=6% Similarity=-0.055 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 012365 10 SSASYKKLITYSCDLLKVHVALDVVEQMVQGE------LVPSTETINSILHACEESYEFNLVRRIYPMICHH 75 (465)
Q Consensus 10 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 75 (465)
+...+-.+...+.+.|++..|...|+...+.- -.+....+..+..++.+.|+++.|...++.+.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 33344445555555566666665555544310 1123344445555555555555555555555443
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.46 E-value=0.082 Score=40.01 Aligned_cols=84 Identities=8% Similarity=-0.014 Sum_probs=52.0
Q ss_pred cCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHHhccCCHHH
Q 012365 25 LKVHVALDVVEQMVQGELVPSTETINSILHACEESY---EFNLVRRIYPMICHHNLKP--NSETFRSMISLNVKIKDFDS 99 (465)
Q Consensus 25 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~ 99 (465)
.....+.+-|.+..+.|. ++..+...+..++++.+ +.+++..+++...+.. .| +...+-.|.-+|.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHH
Confidence 345556666666655554 46666666666777766 5557777777776654 23 23444445555677777777
Q ss_pred HHHHHHHHHHc
Q 012365 100 AYSLLDDLKEM 110 (465)
Q Consensus 100 a~~~~~~m~~~ 110 (465)
|.+.++.+.+.
T Consensus 90 A~~y~~~lL~i 100 (152)
T 1pc2_A 90 ALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 77777777664
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.06 E-value=0.39 Score=35.97 Aligned_cols=62 Identities=13% Similarity=0.101 Sum_probs=38.5
Q ss_pred hhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCChhHHHHHHH
Q 012365 375 RDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQACK 437 (465)
Q Consensus 375 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l~~~~ 437 (465)
+|+++|+++|+.+++.+-.. ...|.....--.+.|+...|.+++.+....++.+.-++....
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 66777777777776543333 556666666666677777777777777666666555544433
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.90 E-value=0.77 Score=33.64 Aligned_cols=131 Identities=15% Similarity=0.063 Sum_probs=91.4
Q ss_pred HHHHHHH--HhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---------------
Q 012365 14 YKKLITY--SCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHN--------------- 76 (465)
Q Consensus 14 y~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------------- 76 (465)
...|+.+ +.-.|.+++..++..+..... +..-||-++-.....-+-+-..++++.+-+.-
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~ 84 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECG 84 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHH
Confidence 3444544 334688999999999887643 44556655555555555555555555543210
Q ss_pred --CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 012365 77 --LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVK 148 (465)
Q Consensus 77 --~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 148 (465)
...+....+..++.+...|.-+.-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.+.-+.|++
T Consensus 85 ~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 85 VINNTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 1124556677888888889999999998886443 3788899999999999999999999999999988863
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.77 E-value=1.1 Score=34.81 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=22.3
Q ss_pred cCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHc
Q 012365 229 SHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVH 279 (465)
Q Consensus 229 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 279 (465)
..|+++.|.++.+++ -+...|..|-......|+++-|.+.|....
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 345555555544433 234455555555555555555555555443
No 229
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.72 E-value=0.17 Score=37.00 Aligned_cols=76 Identities=7% Similarity=0.013 Sum_probs=55.8
Q ss_pred CCCCcHHHHHHHHHHhHhh---hhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCChhH
Q 012365 356 GLPPSRKCLDFLLGACVNA---RDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRF 431 (465)
Q Consensus 356 ~~~p~~~~~~~ll~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 431 (465)
+-.|+..+--.+.+++.+. .+..++..+++++.+.+-.-....+-.|.-++.+.|++++|.++.+.+++..|.+.-
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 4445555555555666554 466789999999988651123446677778999999999999999999999998743
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.69 E-value=0.15 Score=43.18 Aligned_cols=86 Identities=16% Similarity=0.142 Sum_probs=68.7
Q ss_pred chhhhHHhHHHHHhhcCCCCc---HHHHHHHHHHhHh-----hhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-C
Q 012365 340 DVQIGLDLLQFIKDELGLPPS---RKCLDFLLGACVN-----ARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLAS-G 410 (465)
Q Consensus 340 ~~~~A~~~~~~m~~~~~~~p~---~~~~~~ll~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-g 410 (465)
....|...+++.. .+.|+ ...|..+...|.. -|+.++|.+.|++..+.+-.-+..++..+...|++. |
T Consensus 178 ~l~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 178 TVHAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred hHHHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 4556667777776 56676 5678888888888 499999999999999963112488999999999995 9
Q ss_pred ChhhHHHHHhccCCCCCC
Q 012365 411 NRKSASKLLSKMPKDDPH 428 (465)
Q Consensus 411 ~~~~A~~~~~~m~~~~~~ 428 (465)
+.++|.+++++.+..++.
T Consensus 255 d~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHHcCCCC
Confidence 999999999999987765
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.23 E-value=1.1 Score=32.75 Aligned_cols=137 Identities=15% Similarity=0.173 Sum_probs=72.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHH
Q 012365 94 IKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQ 173 (465)
Q Consensus 94 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~ 173 (465)
.|..++..++..+.... .+..-||-+|.-....-+-+-..++++..-.. -| +..|++...+..-+-
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD-------is~C~NlKrVi~C~~- 85 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD-------LDKCQNLKSVVECGV- 85 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC-------GGGCSCTHHHHHHHH-
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC-------cHhhhcHHHHHHHHH-
Confidence 45566666666665542 34444555555555555555555555544321 11 122333333222221
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCC
Q 012365 174 LKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGC 248 (465)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 248 (465)
..+ .+...+...++.+...|+-++-.+++.++.....+..+..-.+..+|.+.|+..+|.+++.+..++|+
T Consensus 86 --~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 86 --INN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp --HTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred --Hhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 111 23444555666777777777777777663223332333355667777777777777777777777775
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.22 E-value=0.4 Score=35.55 Aligned_cols=73 Identities=5% Similarity=0.006 Sum_probs=55.0
Q ss_pred CCcHHHHHHHHHHhHhh---hhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCChh
Q 012365 358 PPSRKCLDFLLGACVNA---RDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVR 430 (465)
Q Consensus 358 ~p~~~~~~~ll~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 430 (465)
.|+..+--.+.+++.+. .+..++..+++++.+.+-.-.....-.|.-++.+.|++++|.++.+.+++..|.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 56666655666666665 46678999999998854222334556677799999999999999999999999874
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.91 E-value=0.62 Score=39.50 Aligned_cols=63 Identities=5% Similarity=-0.043 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhc-----CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHc
Q 012365 48 TINSILHACEES-----YEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKI-KDFDSAYSLLDDLKEM 110 (465)
Q Consensus 48 ~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~ 110 (465)
.|..+...|... |+.++|.+.|++..+.+-.-+..++......+++. |+.+.+.+.+++....
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 444444444442 55555555555555443111244444444444442 5555555555555443
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.71 E-value=0.68 Score=33.62 Aligned_cols=91 Identities=7% Similarity=-0.046 Sum_probs=51.8
Q ss_pred HHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHhhCCCCC--CHHHHHHHHHHHh
Q 012365 18 ITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNL---VRRIYPMICHHNLKP--NSETFRSMISLNV 92 (465)
Q Consensus 18 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~li~~~~ 92 (465)
+..-.....+..+.+-|......|. |+..+--.+..++.+.++... +..+++.+.+.+ .| .....-.|.-++.
T Consensus 8 l~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~y 85 (126)
T 1nzn_A 8 LNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNY 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHH
Confidence 3333344455556666665555443 455555556666666655544 666676666653 22 2233334445566
Q ss_pred ccCCHHHHHHHHHHHHHc
Q 012365 93 KIKDFDSAYSLLDDLKEM 110 (465)
Q Consensus 93 ~~g~~~~a~~~~~~m~~~ 110 (465)
+.|+++.|.+.++.+.+.
T Consensus 86 klg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 86 RLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHh
Confidence 777777777777776654
No 235
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.32 E-value=1.6 Score=39.39 Aligned_cols=72 Identities=8% Similarity=0.176 Sum_probs=58.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHHHH
Q 012365 83 TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME-----QANVKPDSQTFS 155 (465)
Q Consensus 83 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~~~~ 155 (465)
+...++..+...|++++|...+..+.... +-+...|..+|.++.+.|+..+|++.|+... +.|+.|+..+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 34456777888899999998888887665 6688899999999999999999999998875 358999887654
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.06 E-value=1.3 Score=33.20 Aligned_cols=30 Identities=7% Similarity=-0.006 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHHhcccCH------HHHHHHHHHHHh
Q 012365 10 SSASYKKLITYSCDLLKV------HVALDVVEQMVQ 39 (465)
Q Consensus 10 ~~~~y~~li~~~~~~g~~------~~A~~~~~~m~~ 39 (465)
|..+|=..+..+-+.|++ ++.+++|++...
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia 47 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE 47 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH
Confidence 445555566666555666 566666665544
No 237
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.86 E-value=7 Score=37.55 Aligned_cols=130 Identities=8% Similarity=0.012 Sum_probs=70.0
Q ss_pred cCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhh
Q 012365 298 FKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDL 377 (465)
Q Consensus 298 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~ 377 (465)
..+.+.|...+.........+......+- ..+.. .....+...++...+.... ... ++.....-.+....+.|++
T Consensus 227 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~-~~ia~-~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~e~~~r~Alr~~d~ 301 (618)
T 1qsa_A 227 RQDAENARLMIPSLAQAQQLNEDQIQELR-DIVAW-RLMGNDVTDEQAKWRDDAI-MRS--QSTSLIERRVRMALGTGDR 301 (618)
T ss_dssp HHCHHHHHHHHHHHHHHTTCCHHHHHHHH-HHHHH-TSCSTTCCHHHHHHHHHHH-HTC--CCHHHHHHHHHHHHHHTCH
T ss_pred hcCHHHHHHHHHhhhhccCCCHHHHHHHH-HHHHH-HHHHcCCChHHHHHHHhcc-ccC--CChHHHHHHHHHHHHCCCH
Confidence 34677888888777653222222222221 11221 1111232455556666544 222 3333333344444466888
Q ss_pred hHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCCCCCChhHHHH
Q 012365 378 KRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRFVIQ 434 (465)
Q Consensus 378 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l~ 434 (465)
+.|...|+.|.... .....-.--+..++...|+.++|..+|+++... .++..++.
T Consensus 302 ~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~-~~fYg~lA 356 (618)
T 1qsa_A 302 RGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ-RGFYPMVA 356 (618)
T ss_dssp HHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-CSHHHHHH
T ss_pred HHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC-CChHHHHH
Confidence 88888887776531 223444556667777888888888888887653 35554443
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.79 E-value=0.58 Score=42.24 Aligned_cols=71 Identities=11% Similarity=0.043 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCC---hhHHHHHHHHHH-----HcCCCCCHHHHHHH
Q 012365 118 MYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSN---EEDIIKYYEQLK-----SAGGQITKYVFMAL 189 (465)
Q Consensus 118 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~---~~~~~~~~~~~~-----~~~~~~~~~~~~~l 189 (465)
....++..+...|+++++...+..+.... +-+...+..+|.++.. ..++.+.|+.+. +.|+.|...+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 45567788888999999998888887542 4477788888888554 445555555544 35899988776543
No 239
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.25 E-value=1.7 Score=29.83 Aligned_cols=45 Identities=20% Similarity=0.332 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 012365 64 LVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLK 108 (465)
Q Consensus 64 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 108 (465)
+..+-++.+....+.|++.+..+.+.+|-|.+++..|.++|+-++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444444555555555555555555555555554443
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.01 E-value=1.5 Score=43.11 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=47.5
Q ss_pred hHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhccCC
Q 012365 371 CVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKMPK 424 (465)
Q Consensus 371 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 424 (465)
|...|+++.|+++-++.+.. .|-+-.+|..|..+|...|+++.|+-.++-++.
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 55679999999999999987 477788999999999999999999999999863
No 241
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.40 E-value=0.99 Score=30.98 Aligned_cols=59 Identities=19% Similarity=0.174 Sum_probs=43.8
Q ss_pred hHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 012365 344 GLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYK 404 (465)
Q Consensus 344 A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 404 (465)
..+-++.+. ...+-|++....+.+++|.+.+++..|.++|+-+..+ ..+...+|..+++
T Consensus 29 ~rrglN~l~-~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 29 LRKGMNTLV-GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHT-TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHh-ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 333344444 5678899999999999999999999999999988865 3444556777765
No 242
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.36 E-value=4.1 Score=31.61 Aligned_cols=101 Identities=10% Similarity=0.142 Sum_probs=63.0
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHH
Q 012365 90 LNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIK 169 (465)
Q Consensus 90 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 169 (465)
.....|+++.|.++.+++ .+...|..|.......|+++-|.+.|.... |......+-...++.+...+
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~------D~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH------SFDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC------CHHHHHHHHHHhCCHHHHHH
Confidence 345568888888877655 256778888888888888888888887754 33333333333444444444
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012365 170 YYEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLD 208 (465)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 208 (465)
+-+.....| -++.....+...|+++++.++|.+
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 433333333 145555666777888888887763
No 243
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=90.46 E-value=7.1e-05 Score=67.42 Aligned_cols=223 Identities=12% Similarity=0.094 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 012365 11 SASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISL 90 (465)
Q Consensus 11 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 90 (465)
+..|..|-.+..+.|++.+|++.|-+. -|+..|..++.++.+.|.++.-...+....+.. .++.+=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 456777888888888888887766321 155578889999999999999998887766553 344455588899
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHH
Q 012365 91 NVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKY 170 (465)
Q Consensus 91 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 170 (465)
|++.++..+.++++. .||..-...+..-|...|.++.|.-+|..+.. |..|-.++.+.++....
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHH
Confidence 999998777655542 46766677778888888888877766655432 12222223334443333
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCC
Q 012365 171 YEQLKSAGGQITKYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNL 250 (465)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 250 (465)
.+..++.+ ++.||-.+-.+|...+.+.-|.-.--.+-..+... ..++..|-..|.+++.+.+++.-... -+.
T Consensus 190 VdaArKAn---s~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL----~elv~~YE~~G~f~ELIsLlEaglgl-ErA 261 (624)
T 3lvg_A 190 VDGARKAN---STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADEL----EELINYYQDRGYFEELITMLEAALGL-ERA 261 (624)
T ss_dssp TTTTTTCC---SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCC----SGGGSSSSTTCCCTTSTTTHHHHTTS-TTC
T ss_pred HHHHHhcC---ChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHH----HHHHHHHHhCCCHHHHHHHHHHHhCC-Cch
Confidence 33333322 44556666666666665554433322211222111 22444555666666666655554421 123
Q ss_pred CHHHHHHHHHHHHcc
Q 012365 251 EPRAVIALIEHLNSE 265 (465)
Q Consensus 251 ~~~~~~~ll~~~~~~ 265 (465)
..-.|+-|.-.|++-
T Consensus 262 HmGmFTELaILYsKY 276 (624)
T 3lvg_A 262 HMGMFTELAILYSKF 276 (624)
T ss_dssp CHHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHHHHhc
Confidence 344555555555543
No 244
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.28 E-value=17 Score=36.76 Aligned_cols=25 Identities=20% Similarity=0.297 Sum_probs=17.4
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHH
Q 012365 14 YKKLITYSCDLLKVHVALDVVEQMV 38 (465)
Q Consensus 14 y~~li~~~~~~g~~~~A~~~~~~m~ 38 (465)
|-.+++...+.++.+.+.++|..+.
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445566666678888888888765
No 245
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.80 E-value=2.5 Score=30.86 Aligned_cols=76 Identities=20% Similarity=0.248 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChh
Q 012365 319 EMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVL 397 (465)
Q Consensus 319 ~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 397 (465)
.++..+.+.-+++........+..+++.+++... +.+-.-....+-.|.-++.+.|+++.|+++.+.+.+. .|+-.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~-~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIY-KEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH-HHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH-hcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCCH
Confidence 3333444444444444445568889999999988 5442123455666777899999999999999999985 55443
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.72 E-value=2.2 Score=41.96 Aligned_cols=129 Identities=9% Similarity=0.137 Sum_probs=78.3
Q ss_pred HHHHHHHHhcccC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhC------CCC-CCHH--
Q 012365 14 YKKLITYSCDLLK-VHVALDVVEQMVQGELVPSTETINSILHACEESY-EFNLVRRIYPMICHH------NLK-PNSE-- 82 (465)
Q Consensus 14 y~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~------~~~-~~~~-- 82 (465)
-..++..+...|+ ++.|+.+|+++.+.....+......++..+...+ +--+|.+++.+..+. ..+ .+..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3445555555666 6889999999988643322222222333322222 222334444333211 111 1211
Q ss_pred --------HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012365 83 --------TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME 143 (465)
Q Consensus 83 --------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 143 (465)
..+.=...+...|+++.|+.+-++....- |-+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11222344667899999999999987663 4457899999999999999999999998873
No 247
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=89.11 E-value=4 Score=29.79 Aligned_cols=80 Identities=15% Similarity=0.233 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHH-hcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012365 46 TETINSILHACE-ESY-EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIM 123 (465)
Q Consensus 46 ~~~~~~ll~~~~-~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 123 (465)
..-|..--..+. +.. |.-+..+-++.+....+.|++.+..+.+.+|-+.+|+..|.++|+-.+..- .+....|..++
T Consensus 51 ~EeFdaRy~~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 51 DEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 334443333333 333 556677788888888888999999999999999999999999998887543 34455687777
Q ss_pred HHH
Q 012365 124 AGY 126 (465)
Q Consensus 124 ~~~ 126 (465)
.-.
T Consensus 130 qEl 132 (152)
T 2y69_E 130 QEL 132 (152)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 248
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.71 E-value=4.4 Score=30.02 Aligned_cols=74 Identities=20% Similarity=0.264 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCCh
Q 012365 320 MAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNV 396 (465)
Q Consensus 320 ~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 396 (465)
.+..+.+.-+++........+..+++.+++... +.+-.-.....-.|.-++.+.|+++.|+++.+.+.+. .|+-
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~-~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n 110 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIY-KEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 110 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHH-HHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-hcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCc
Confidence 333444444444444445678889999999988 5332223444555667899999999999999999995 5544
No 249
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.58 E-value=15 Score=31.85 Aligned_cols=111 Identities=13% Similarity=0.051 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHH----HHHHHcCCCCCHHHHHHHH
Q 012365 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVY----EEIKEAGCNLEPRAVIALI 259 (465)
Q Consensus 184 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~m~~~~~~p~~~~~~~ll 259 (465)
.+|.++..=|.+.+++++|.+++.. -...+.+.|+...+-++. +-+.+.++++|..+...++
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~--------------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILAS--------------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH--------------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH--------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3566677778888899998888742 223344556665555443 4455667778877777777
Q ss_pred HHHHccCcHH-HHHHHHHHHcC----CC----CCccchhhHhhHhhhcCChhHHHHHH
Q 012365 260 EHLNSEGELN-RLIQLLEEVHD----PD----YWMDGCCRLILHCVRFKQLSSATDLL 308 (465)
Q Consensus 260 ~~~~~~g~~~-~a~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~a~~~~ 308 (465)
..+.....-+ .-..+++.+.+ .| -.|+....+...|.+.+++.+|...|
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 7665544311 11222222221 11 12333345666677777777777665
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.55 E-value=9.2 Score=29.22 Aligned_cols=72 Identities=13% Similarity=0.235 Sum_probs=51.2
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHc--CC----------------------CCChhHHHHHHHHHHhcCChhhHHHH
Q 012365 363 CLDFLLGACVNARDLKRAHLIWKEYENA--GL----------------------PYNVLSYLWMYKAFLASGNRKSASKL 418 (465)
Q Consensus 363 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~--g~----------------------~p~~~~~~~l~~~~~~~g~~~~A~~~ 418 (465)
++..+.+++...|++.+|...|++..+. .+ .++...---+..+|.+.|++++|+.+
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~ 144 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAI 144 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHH
Confidence 5566778888999999999999986422 11 11112334467789999999999999
Q ss_pred HhccCC--CCCChhHHHH
Q 012365 419 LSKMPK--DDPHVRFVIQ 434 (465)
Q Consensus 419 ~~~m~~--~~~~~~~~l~ 434 (465)
++.++. +.|..+.+|+
T Consensus 145 Le~Ip~k~Rt~kvnm~La 162 (167)
T 3ffl_A 145 LDGIPSRQRTPKINMLLA 162 (167)
T ss_dssp HHTSCGGGCCHHHHHHHH
T ss_pred HhcCCchhcCHHHHHHHH
Confidence 999875 4455566664
No 251
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.73 E-value=8.5 Score=28.10 Aligned_cols=72 Identities=18% Similarity=0.291 Sum_probs=55.8
Q ss_pred HHHhccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 012365 89 SLNVKIK-DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC 161 (465)
Q Consensus 89 ~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 161 (465)
..+.+.. |.=+..+-++.+...++.|++....+.+++|-+.+++.-|.++|+-.+.. +.+....|..++.-.
T Consensus 60 ~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 60 TYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 132 (152)
T ss_dssp HHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHH
Confidence 3333444 45567777888888899999999999999999999999999999998853 234455688777753
No 252
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=84.97 E-value=3.4 Score=34.87 Aligned_cols=85 Identities=14% Similarity=0.110 Sum_probs=45.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhcCCC--CChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHcc
Q 012365 190 INAYTTCGEFEKARQVVLDAEIPV--KSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRA--VIALIEHLNSE 265 (465)
Q Consensus 190 ~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~ 265 (465)
+...+..|+.+-...+++...... .+... .+. +...+..+......++++.+.+.|..++... -.+.+...++.
T Consensus 152 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g-~t~-l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 229 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMG-RNA-LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTSCCCTTCCCTTS-CCH-HHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCCCccCCCC-CCH-HHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc
Confidence 444556777777777776322211 11110 222 3333455666666777778888876554321 12334445566
Q ss_pred CcHHHHHHHHH
Q 012365 266 GELNRLIQLLE 276 (465)
Q Consensus 266 g~~~~a~~~~~ 276 (465)
|+.+-+..+++
T Consensus 230 ~~~~~v~~Ll~ 240 (285)
T 1wdy_A 230 KHLGLVQRLLE 240 (285)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 77776666655
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.55 E-value=22 Score=37.26 Aligned_cols=99 Identities=11% Similarity=-0.023 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCC-----------------------CChHHHHHHHHHHHHcCCChhHHHH
Q 012365 182 TKYVFMALINAYTTCGEFEKARQVVLDAEIPV-----------------------KSRSEVKSALVSALASHGRTSDAII 238 (465)
Q Consensus 182 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----------------------~~~~~~~~~l~~~~~~~g~~~~a~~ 238 (465)
+....-.+..++...|++++|.+.|++..... .....-|..++..+-+.+.++.+.+
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~ 920 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE 920 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 33333444566677777777777776521110 0000114455555556666666665
Q ss_pred HHHHHHHcCCCCCH----HHHHHHHHHHHccCcHHHHHHHHHHHcC
Q 012365 239 VYEEIKEAGCNLEP----RAVIALIEHLNSEGELNRLIQLLEEVHD 280 (465)
Q Consensus 239 ~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 280 (465)
+-....+..-.-+. ..|..+.+++...|++++|...+-.+.+
T Consensus 921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST 966 (1139)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence 55544433211111 1244555555666666666555555443
No 254
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=83.95 E-value=30 Score=33.51 Aligned_cols=80 Identities=8% Similarity=-0.042 Sum_probs=45.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCC
Q 012365 122 IMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYVFMALINAYTT---CGE 198 (465)
Q Consensus 122 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~ 198 (465)
....+.-.|+++.|.+.+-.. ...+.+++.+.+.-++-.+. -+.+......-...-+..||..|.+ ..+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~----~~~lls~~~~~~~lN~arLI~~Yt~~F~~td 371 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI----DSSTRLTKKPKRDIRFANILANYTKSFRYSD 371 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC---------------------CHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC----CCcccccCCCcccccHHHHHHHHHHHhhcCC
Confidence 445556689999999987754 35677788888877665543 1111111100012235667777764 578
Q ss_pred HHHHHHHHHHh
Q 012365 199 FEKARQVVLDA 209 (465)
Q Consensus 199 ~~~a~~~~~~~ 209 (465)
...|.+.|--+
T Consensus 372 ~~~Al~Y~~li 382 (661)
T 2qx5_A 372 PRVAVEYLVLI 382 (661)
T ss_dssp HHHHHHHHHGG
T ss_pred HHHHHHHHHHH
Confidence 88888887654
No 255
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=83.63 E-value=0.0024 Score=57.87 Aligned_cols=204 Identities=13% Similarity=0.067 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012365 183 KYVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHL 262 (465)
Q Consensus 183 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 262 (465)
+.+|..|..+..+.+++.+|++.|- +..++.. |..++.+..+.|.+++-.+++...++..-.| ..=+.|+-+|
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI----kA~Dps~-y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ay 126 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI----KADDPSS-YMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFAL 126 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC----CCSCCCS-SSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH----hCCChHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHH
Confidence 4566677777777777777766652 2222221 6667777777777777777766655543222 3334667777
Q ss_pred HccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchh
Q 012365 263 NSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQ 342 (465)
Q Consensus 263 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 342 (465)
++.+++.+..+++ .+........+..-|...|.++.|.-+|..+.. ..-..+ ....-|++.
T Consensus 127 Ak~~rL~elEefl-----~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAs---------tLV~L~~yq 187 (624)
T 3lvg_A 127 AKTNRLAELEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLAS---------TLVHLGEYQ 187 (624)
T ss_dssp HTSCSSSTTTSTT-----SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSS---------SSSSCSGGG
T ss_pred HhhCcHHHHHHHH-----cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHH---------HHHHHHHHH
Confidence 7777654322221 122222334555555566666666665544322 000000 000124444
Q ss_pred hhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhcc
Q 012365 343 IGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSKM 422 (465)
Q Consensus 343 ~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 422 (465)
.|.+. ..-..++.||..+-.+|...+.+..|.-.--.++-. +.-...++.-|...|.+++-+.+++.-
T Consensus 188 ~AVda-------ArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 188 AAVDG-------ARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp SSTTT-------TTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred HHHHH-------HHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 44332 223446778999999999999888876654444422 223445667788999999999999876
Q ss_pred CC
Q 012365 423 PK 424 (465)
Q Consensus 423 ~~ 424 (465)
+.
T Consensus 256 lg 257 (624)
T 3lvg_A 256 LG 257 (624)
T ss_dssp TT
T ss_pred hC
Confidence 63
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.26 E-value=48 Score=34.75 Aligned_cols=183 Identities=10% Similarity=0.022 Sum_probs=106.2
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCC----CCCc-------------
Q 012365 223 LVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDP----DYWM------------- 285 (465)
Q Consensus 223 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~------------- 285 (465)
++..+...+.++-+.++..- ++-++..--.+..++...|++++|...|++.... +...
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 44455556666655543322 2234444445667889999999999999876421 0000
Q ss_pred -------cchhhHhhHhhhcCChhHHHHHHHHHHHcccchhH-----HHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHh
Q 012365 286 -------DGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEM-----AMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKD 353 (465)
Q Consensus 286 -------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~ 353 (465)
.-|..++..+.+.+.++.+.++-....+...++.. .|..++...+.. |++++|...+-.+.
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l------~~ye~Ay~aL~~~p- 965 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA------GKFDAAHVALMVLS- 965 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH------CCSGGGGHHHHHHH-
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhh------CCHHHHHHHHHhCC-
Confidence 12345666677888888888887766653222211 345555655555 99999999998887
Q ss_pred hcCCCCcHHHHHHHHHHhHhhhhhhH------------HHHHHHHHHHc--CCCCChhHHHHHHHHHHhcCChhhHHHHH
Q 012365 354 ELGLPPSRKCLDFLLGACVNARDLKR------------AHLIWKEYENA--GLPYNVLSYLWMYKAFLASGNRKSASKLL 419 (465)
Q Consensus 354 ~~~~~p~~~~~~~ll~~~~~~g~~~~------------A~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 419 (465)
....+ ...+..|+..+|..|..+. ..+++..-.+. .....+.-|..|..-+...|++..|..++
T Consensus 966 d~~~r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vm 1043 (1139)
T 4fhn_B 966 TTPLK--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAII 1043 (1139)
T ss_dssp HSSSC--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CHHHH--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHH
Confidence 43333 3456667776666654433 33333332221 11122234566666667788887765544
No 257
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=79.70 E-value=8.3 Score=32.34 Aligned_cols=86 Identities=16% Similarity=0.061 Sum_probs=48.2
Q ss_pred HhhhhhhHHHHHHHHHHHcCCCCChhH--HHHHHHHHHhcCChhhHHHHHhccC-C---CCC-ChhHHHHHHHhh-cccc
Q 012365 372 VNARDLKRAHLIWKEYENAGLPYNVLS--YLWMYKAFLASGNRKSASKLLSKMP-K---DDP-HVRFVIQACKQT-YTIP 443 (465)
Q Consensus 372 ~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~m~-~---~~~-~~~~~l~~~~~~-~~~~ 443 (465)
+..|+.....++.+.+.+.|..++... -...+...++.|+.+-+..++++.. . .+. ..+.+--|+... ....
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~ 269 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIA 269 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHH
Confidence 345565556677788888877666532 1223344456788888888877322 1 111 123343343332 3344
Q ss_pred chhhhcCCCCCcch
Q 012365 444 SLQKERGFEKDRDT 457 (465)
Q Consensus 444 ~~~~~~~~~pd~~t 457 (465)
+.+.+.|..||...
T Consensus 270 ~~Ll~~Ga~~~~~d 283 (285)
T 1wdy_A 270 ELLCKRGASTDCGD 283 (285)
T ss_dssp HHHHHHSSCSCCSS
T ss_pred HHHHHcCCCCCccc
Confidence 66677888877543
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.23 E-value=37 Score=30.85 Aligned_cols=94 Identities=13% Similarity=0.033 Sum_probs=51.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCcHHHHHHHHHHHcC---CCCCccch----hh
Q 012365 220 KSALVSALASHGRTSDAIIVYEEIKEAGCNLE--PRAVIALIEHLNSEGELNRLIQLLEEVHD---PDYWMDGC----CR 290 (465)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~----~~ 290 (465)
+..+...|.+.|+++.|.+.+.++...-..+. ...+..+++.+...+++..+...+.++.. .+..++.. ..
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~ 213 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTY 213 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH
Confidence 44566666666666666666666665422222 33455566666666666666666665432 22222211 12
Q ss_pred HhhHhhhcCChhHHHHHHHHHHH
Q 012365 291 LILHCVRFKQLSSATDLLKQLKD 313 (465)
Q Consensus 291 ~~~~~~~~~~~~~a~~~~~~~~~ 313 (465)
.+..+...+++..|...|-+...
T Consensus 214 ~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 214 YGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHHHhc
Confidence 22233456777777777766555
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.01 E-value=4.8 Score=33.60 Aligned_cols=50 Identities=16% Similarity=0.070 Sum_probs=27.5
Q ss_pred CCchhhhHHhHHHHHhhcCCCC-cHHHHHHHHHHhHhhhhhhHHHHHHHHHHHc
Q 012365 338 PPDVQIGLDLLQFIKDELGLPP-SRKCLDFLLGACVNARDLKRAHLIWKEYENA 390 (465)
Q Consensus 338 ~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 390 (465)
.|++++|++....-. .-.| |...-..++..+|-.|++++|.+-++...+.
T Consensus 10 ~g~L~~al~~~~~~V---R~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 10 EGQLQQALELLIEAI---KASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp TTCHHHHHHHHHHHH---HTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---HhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 456666665555444 1223 4444455566666666666666666665553
No 260
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=78.85 E-value=13 Score=25.45 Aligned_cols=50 Identities=10% Similarity=0.054 Sum_probs=21.6
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 012365 56 CEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMN 111 (465)
Q Consensus 56 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 111 (465)
+.+.|++++|..+.+... .||...|-+|-. .+.|..++++.-+.++...|
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 334455555554443221 344444444322 34444444444444444433
No 261
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=78.75 E-value=10 Score=29.01 Aligned_cols=70 Identities=7% Similarity=-0.048 Sum_probs=45.0
Q ss_pred cCCCCCHHH--HHHHHHHHhcccCHHHHHHHHHHHHhC-CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 012365 5 LEITPSSAS--YKKLITYSCDLLKVHVALDVVEQMVQG-ELVPS-------TETINSILHACEESYEFNLVRRIYPMICH 74 (465)
Q Consensus 5 ~~~~p~~~~--y~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 74 (465)
.|+.|.-.. +-.-++.+...|.++.|+-+.+.+... +..|+ ..++..+..++...+++.+|...|++..+
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 356665444 344577788899999999998887542 12233 13556677888999999999999999754
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.38 E-value=17 Score=33.19 Aligned_cols=97 Identities=7% Similarity=-0.066 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC-CCCCHHHHHHH--
Q 012365 48 TINSILHACEESYEFNLVRRIYPMICHHN--LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMN-LMPTASMYNAI-- 122 (465)
Q Consensus 48 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~l-- 122 (465)
+...+...+.+.|+++.|.+.|.++.... ...-...+-.+|+.+...+++..+...+++....- -.++....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 55567777888888888888888877632 22335677777888888888888888877764321 01232222211
Q ss_pred --HHHHHhcCCHHHHHHHHHHHHH
Q 012365 123 --MAGYFRKKDVQGALMVLKEMEQ 144 (465)
Q Consensus 123 --i~~~~~~g~~~~a~~~~~~m~~ 144 (465)
...+...+++..|.+.|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 1223456788888887777654
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=78.10 E-value=12 Score=25.54 Aligned_cols=50 Identities=8% Similarity=-0.106 Sum_probs=21.3
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 012365 56 CEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMN 111 (465)
Q Consensus 56 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 111 (465)
+.+.|++++|..+.+... .||...|-+|-. .+.|..++++.-+.++...|
T Consensus 49 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 334455555544432211 344444443322 34444444444444444443
No 264
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.43 E-value=43 Score=30.61 Aligned_cols=167 Identities=14% Similarity=0.009 Sum_probs=84.7
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHcCC--CC-----CccchhhHhhHhhhcCChhHHHHHHHHHHHc----ccch-hH-HH
Q 012365 256 IALIEHLNSEGELNRLIQLLEEVHDP--DY-----WMDGCCRLILHCVRFKQLSSATDLLKQLKDK----FKDD-EM-AM 322 (465)
Q Consensus 256 ~~ll~~~~~~g~~~~a~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~-~~ 322 (465)
..|...+...|++.+|..++.++... +. ..+.+...+..|...+++..|..+++++... ..++ .. .+
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34556667777777777777766421 11 1223344555666777777777777776431 1111 11 12
Q ss_pred HHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHH----HHhHhhhhhhHHHHHHHHHHHcCCCCChhH
Q 012365 323 EYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLL----GACVNARDLKRAHLIWKEYENAGLPYNVLS 398 (465)
Q Consensus 323 ~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 398 (465)
......+... .+++.+|-..|.++.+.....-+...+..++ .+..-.+..+.--.+.........-++...
T Consensus 221 ~~~~~~~~~~-----e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~ 295 (445)
T 4b4t_P 221 YNLLVKISLH-----KREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLES 295 (445)
T ss_dssp HHHHHHHHHH-----HCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHH
T ss_pred HHHHHHHHHH-----hhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHH
Confidence 2222222221 3677777766666552222222332222211 111111111111222223222222356778
Q ss_pred HHHHHHHHHhc--CChhhHHHHHhccCCCCC
Q 012365 399 YLWMYKAFLAS--GNRKSASKLLSKMPKDDP 427 (465)
Q Consensus 399 ~~~l~~~~~~~--g~~~~A~~~~~~m~~~~~ 427 (465)
|..++.+|... .+|+.+.+.++..+..++
T Consensus 296 ~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~ 326 (445)
T 4b4t_P 296 QESLVKLFTTNELMRWPIVQKTYEPVLNEDD 326 (445)
T ss_dssp HHHHHHHHHHCCSSSHHHHHHHTCSSTTTCC
T ss_pred HHHHHHHHHhchHhhhHHHHHHHHHHhcccc
Confidence 99999998765 578888888888776554
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=76.26 E-value=8.5 Score=32.14 Aligned_cols=49 Identities=8% Similarity=0.031 Sum_probs=19.1
Q ss_pred cccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012365 23 DLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMI 72 (465)
Q Consensus 23 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 72 (465)
+.|++++|++....-++..+ -|...=..++..+|-.|++++|.+=++..
T Consensus 9 ~~g~L~~al~~~~~~VR~~P-~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34444444444444333321 13333333444444444444444333333
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.12 E-value=11 Score=29.84 Aligned_cols=75 Identities=13% Similarity=0.037 Sum_probs=52.3
Q ss_pred CCCCcHHHHHHHHHHhH--hhhhhhHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHhccCCCCCChh
Q 012365 356 GLPPSRKCLDFLLGACV--NARDLKRAHLIWKEYENAGLPYNV-LSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVR 430 (465)
Q Consensus 356 ~~~p~~~~~~~ll~~~~--~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 430 (465)
..+-|+.....-+.--. ..++...+..+|..|...|+--.. ..|......+...|++.+|.++|+.=.+++..+-
T Consensus 72 rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 72 TYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp GGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 45566654444333211 234466889999999988764444 4678888888899999999999998887776553
No 267
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=75.78 E-value=58 Score=31.27 Aligned_cols=338 Identities=9% Similarity=0.008 Sum_probs=177.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 012365 50 NSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129 (465)
Q Consensus 50 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 129 (465)
...+..+.+.+++.....++.. .+.+...-.....+....|+..+|......+=-.| ......++.++..+.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHC
Confidence 3455667778888877765432 24466666666777777888777766666554333 23445677777777766
Q ss_pred CCHHH--HHHHHHHHHHCC-----------CCCCHH-HHHHHHHhhCChhHHHHHHHHHHHcCCCCCHHH---HHHHHHH
Q 012365 130 KDVQG--ALMVLKEMEQAN-----------VKPDSQ-TFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYV---FMALINA 192 (465)
Q Consensus 130 g~~~~--a~~~~~~m~~~~-----------~~p~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~ 192 (465)
|.+.. ...=++.+...| +.++.. ....++....+...+..... . ..++... +...+.-
T Consensus 150 g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~---~--~~~~~~~~~~~~~~~~r 224 (618)
T 1qsa_A 150 GKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFAR---T--TGATDFTRQMAAVAFAS 224 (618)
T ss_dssp TCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHH---H--SCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHh---c--cCCChhhHHHHHHHHHH
Confidence 65433 222222222322 111111 11112222222222221111 1 1223221 2222333
Q ss_pred HHhcCCHHHHHHHHHHhcCC-CCChHH---HHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcH
Q 012365 193 YTTCGEFEKARQVVLDAEIP-VKSRSE---VKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGEL 268 (465)
Q Consensus 193 ~~~~g~~~~a~~~~~~~~~~-~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 268 (465)
+.+ .+.+.|...+...... .-+... .+..+...+...+...++...+....... ++.....-.+....+.|++
T Consensus 225 lar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~ 301 (618)
T 1qsa_A 225 VAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDR 301 (618)
T ss_dssp HHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCH
T ss_pred HHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCH
Confidence 333 3778999998764211 112221 13334444444554556677777655443 4444444444445577999
Q ss_pred HHHHHHHHHHcCCCCC-ccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHh
Q 012365 269 NRLIQLLEEVHDPDYW-MDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDL 347 (465)
Q Consensus 269 ~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~ 347 (465)
+.|...|+.|...... .........+....|+.++|..+|..+.. + .+++.++..- .++.. -.+..
T Consensus 302 ~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~---~--~~fYg~lAa~--~Lg~~--~~~~~---- 368 (618)
T 1qsa_A 302 RGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---Q--RGFYPMVAAQ--RIGEE--YELKI---- 368 (618)
T ss_dssp HHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---S--CSHHHHHHHH--HTTCC--CCCCC----
T ss_pred HHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc---C--CChHHHHHHH--HcCCC--CCCCC----
Confidence 9999999999774432 23345666677789999999999999976 2 2455555431 11110 00000
Q ss_pred HHHHHhhcCCCC---cHH---HHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHhc
Q 012365 348 LQFIKDELGLPP---SRK---CLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSASKLLSK 421 (465)
Q Consensus 348 ~~~m~~~~~~~p---~~~---~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 421 (465)
....+ ... .--.-+..+...|....|...|..+.+. . +......+.......|.++.+.....+
T Consensus 369 -------~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 369 -------DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp -------CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------CCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 00001 000 1112234566789999999999888764 2 333334455555567777777665554
Q ss_pred cCC
Q 012365 422 MPK 424 (465)
Q Consensus 422 m~~ 424 (465)
...
T Consensus 439 ~~~ 441 (618)
T 1qsa_A 439 GKL 441 (618)
T ss_dssp TTC
T ss_pred HHh
Confidence 443
No 268
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=74.47 E-value=20 Score=26.98 Aligned_cols=67 Identities=18% Similarity=0.224 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCC--hhHHHHHHHHHHHcCCCCC
Q 012365 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGR--TSDAIIVYEEIKEAGCNLE 251 (465)
Q Consensus 185 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~p~ 251 (465)
....++.-|...|+.++|.+.++++..+.-....+...+..++-+.+. .+.+..++..+...|+-+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 345678889999999999999998766543333345556666665433 3457778888877775433
No 269
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=74.37 E-value=22 Score=25.81 Aligned_cols=66 Identities=18% Similarity=0.237 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCC--hhHHHHHHHHHHHcCCCCC
Q 012365 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGR--TSDAIIVYEEIKEAGCNLE 251 (465)
Q Consensus 186 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~p~ 251 (465)
...++.-|...|+.++|.+.++++..+.-....+...+..++-+.+. .+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 45678888899999999999998765543333345556666666542 3567788888887775433
No 270
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.27 E-value=53 Score=30.04 Aligned_cols=57 Identities=12% Similarity=0.193 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhcC--C-C---CChHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 012365 187 MALINAYTTCGEFEKARQVVLDAEI--P-V---KSRSEVKSALVSALASHGRTSDAIIVYEEI 243 (465)
Q Consensus 187 ~~l~~~~~~~g~~~~a~~~~~~~~~--~-~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 243 (465)
..|...+...|++.+|.+++.++.. . . ..-...+..-++.|...+++.+|..+++..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKI 203 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3455566666666666666654211 0 0 111112444455555555555555555554
No 271
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=72.18 E-value=88 Score=31.73 Aligned_cols=82 Identities=6% Similarity=-0.025 Sum_probs=40.0
Q ss_pred CchhhhHHhHHHHHhhcCCCCcHHHHH--HHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHH
Q 012365 339 PDVQIGLDLLQFIKDELGLPPSRKCLD--FLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSAS 416 (465)
Q Consensus 339 ~~~~~A~~~~~~m~~~~~~~p~~~~~~--~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 416 (465)
|+.+.+..+.+.+. . ...|....-. ++.-+|+..|+.....+++..+.+. ...++.-...+.-++.-.|+.+.+.
T Consensus 538 g~~e~~~~li~~L~-~-~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 538 GRQELADDLITKML-A-SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TCGGGGHHHHHHHH-H-CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred CChHHHHHHHHHHH-h-CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHH
Confidence 66666666666665 2 1222222222 2233455666666666666666653 1223333333333444456655555
Q ss_pred HHHhccC
Q 012365 417 KLLSKMP 423 (465)
Q Consensus 417 ~~~~~m~ 423 (465)
++++.+.
T Consensus 615 rlv~~L~ 621 (963)
T 4ady_A 615 RIVQLLS 621 (963)
T ss_dssp HHTTTGG
T ss_pred HHHHHHH
Confidence 6555444
No 272
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=70.19 E-value=57 Score=28.70 Aligned_cols=64 Identities=19% Similarity=0.265 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCC--hhHHHHHHHHHHHcCCC
Q 012365 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGR--TSDAIIVYEEIKEAGCN 249 (465)
Q Consensus 186 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~ 249 (465)
...++.-|...|+.++|.+.++++..+.-....+...+..++-+.++ .+.+.+++..+...|+-
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 45566667777777777777776655433333334444555544332 23455666666666654
No 273
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=63.43 E-value=46 Score=27.24 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=12.0
Q ss_pred HHHHhcccCHHHHHHHHHHHH
Q 012365 18 ITYSCDLLKVHVALDVVEQMV 38 (465)
Q Consensus 18 i~~~~~~g~~~~A~~~~~~m~ 38 (465)
++.+....++++|.+++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 445555566666666666553
No 274
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=63.37 E-value=83 Score=28.12 Aligned_cols=164 Identities=11% Similarity=0.035 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhcC----CCCC-hHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHcCCCCCHHHH---
Q 012365 185 VFMALINAYTTCGEFEKARQVVLDAEI----PVKS-RSEVKSALVSALASHG-RTSDAIIVYEEIKEAGCNLEPRAV--- 255 (465)
Q Consensus 185 ~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~--- 255 (465)
....|...|.+.|+.++..+++..... -++. ....-..++..+.... ..+.-.++..+..+..- -+..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 445566777777777777777765211 1111 1112345566655533 23333344443332110 011222
Q ss_pred ---HHHHHHHHccCcHHHHHHHHHHHcCCC-------CCccchhhHhhHhhhcCChhHHHHHHHHHHHc---c-cchhHH
Q 012365 256 ---IALIEHLNSEGELNRLIQLLEEVHDPD-------YWMDGCCRLILHCVRFKQLSSATDLLKQLKDK---F-KDDEMA 321 (465)
Q Consensus 256 ---~~ll~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~-~~~~~~ 321 (465)
.-+...|...|++.+|.+++..+.+.- .-.+.+..-+..|...+++..+...+...... . .|+...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 256677778888888877776664421 11223344455566778888888887776552 1 222221
Q ss_pred HHHHHHHHHHhhhcC-CCCchhhhHHhHHHHH
Q 012365 322 MEYHFSEIFCQIATT-DPPDVQIGLDLLQFIK 352 (465)
Q Consensus 322 ~~~~l~~~~~~~~~~-~~~~~~~A~~~~~~m~ 352 (465)
+.+... ....+. ..+++..|...|-+..
T Consensus 180 --a~i~~~-~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 180 --GALDLQ-SGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp --HHHHHH-HHHHHHHTTSCHHHHHHHHHHHH
T ss_pred --HHHHHH-hhHHHHHhccCHHHHHHHHHHHH
Confidence 222211 111222 3588888877766553
No 275
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=62.90 E-value=48 Score=25.24 Aligned_cols=73 Identities=11% Similarity=0.083 Sum_probs=50.4
Q ss_pred CCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHhccCCCCCChhH
Q 012365 356 GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNV-LSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRF 431 (465)
Q Consensus 356 ~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 431 (465)
..+-|+.....-|.- +. ..+.+..+|..|.+.|+--.. ..|......|...|++.+|.++|+.-.+.+..+..
T Consensus 58 ~YknD~RyLklWl~y-a~--~~~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 58 RYYSDPRFLNLWLKL-GR--LCNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp GGTTCHHHHHHHHHH-HH--HCSCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred hhccCHHHHHHHHHH-HH--hcCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 455666554444422 11 125578899999988765444 46778888888999999999999988877765533
No 276
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=58.83 E-value=88 Score=26.89 Aligned_cols=26 Identities=8% Similarity=0.048 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012365 182 TKYVFMALINAYTTCGEFEKARQVVL 207 (465)
Q Consensus 182 ~~~~~~~l~~~~~~~g~~~~a~~~~~ 207 (465)
++.....+...|.+.|++.+|+..|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 56667777777788888888777663
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=56.22 E-value=61 Score=24.30 Aligned_cols=73 Identities=15% Similarity=0.106 Sum_probs=50.4
Q ss_pred CCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHhccCCCCCChhH
Q 012365 356 GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNV-LSYLWMYKAFLASGNRKSASKLLSKMPKDDPHVRF 431 (465)
Q Consensus 356 ~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 431 (465)
..+-|+.....-+.--. ..+.+..+|..|...|+--.. ..|......+...|++.+|.++++.=.+++..+-.
T Consensus 63 ~YknD~RyLklWl~ya~---~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 63 KYHNDPRFISYCLKFAE---YNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp GGTTCHHHHHHHHHHHT---TBSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred cccCCHHHHHHHHHHHH---hcCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 45566665444443221 224588999999988764444 46778888888899999999999888777765533
No 278
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=55.90 E-value=74 Score=25.18 Aligned_cols=84 Identities=8% Similarity=0.023 Sum_probs=59.8
Q ss_pred HHHHHHhh-----CCCCCCHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 012365 67 RIYPMICH-----HNLKPNSETFRSMISLNVK--IKDFDSAYSLLDDLKEMNLMP-TASMYNAIMAGYFRKKDVQGALMV 138 (465)
Q Consensus 67 ~~~~~~~~-----~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~ 138 (465)
.++++..+ ...+-|+.-....|..--. .+....+..+|..|...|+-- -..-|......+-..|++.+|.++
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~V 137 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVL 137 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45555544 2235566655544443222 455779999999998887644 456688888889999999999999
Q ss_pred HHHHHHCCCCCC
Q 012365 139 LKEMEQANVKPD 150 (465)
Q Consensus 139 ~~~m~~~~~~p~ 150 (465)
|+.-.+.+..|-
T Consensus 138 y~~GI~~~A~P~ 149 (202)
T 3esl_A 138 LELGAENNCRPY 149 (202)
T ss_dssp HHHHHHTTCBSH
T ss_pred HHHHHHcCCccH
Confidence 999988887774
No 279
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=55.14 E-value=48 Score=22.75 Aligned_cols=61 Identities=10% Similarity=0.008 Sum_probs=32.7
Q ss_pred HHHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHHHH
Q 012365 261 HLNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAMEYH 325 (465)
Q Consensus 261 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 325 (465)
.+...|++++|..+.+..- .|+....+..+-.+.|..+.+..-+.++..++.|....+..-
T Consensus 48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~rlGl~s~le~rL~~la~sg~p~~q~Fa~g 108 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP----WPALEPWFALCEWHLGLGAALDRRLAGLGGSSDPALADFAAG 108 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHHHTTCHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHHHhcccHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3455566666555443332 344444444444466666666666666666555555554433
No 280
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=54.66 E-value=43 Score=28.92 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=27.0
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHH
Q 012365 15 KKLITYSCDLLKVHVALDVVEQMVQGELVPSTE----TINSILHACEESYEFNLVRRIY 69 (465)
Q Consensus 15 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~ 69 (465)
++.+..-++.|+++.+..+++ .|..||.. -++.| ...+..|+.+-+.-++
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~----~Gadvn~~~~~~g~TpL-h~A~~~g~~~iv~~Ll 79 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPL-HNAVQMSREDIVELLL 79 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH----HTCCTTCCCTTTCCCHH-HHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHH----CCCCCCccCCCCCcCHH-HHHHHcCCHHHHHHHH
Confidence 445555577898876655554 45555421 12333 3344667766554444
No 281
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=54.55 E-value=28 Score=31.57 Aligned_cols=175 Identities=10% Similarity=0.100 Sum_probs=81.0
Q ss_pred HHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhc
Q 012365 16 KLITYSCDLLKVHVALDVVEQMVQGELVPSTET--INSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVK 93 (465)
Q Consensus 16 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 93 (465)
+.+..-+..|+.+-+..++ +.|..|+... ..+.+...+..|+.+-+..+++.-...+. .+.. -.+.+...++
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~-g~t~L~~A~~ 89 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLL----QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA-KAKD-DQTPLHCAAR 89 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHH----HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSC-CCTT-SCCHHHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-CCCC-CCCHHHHHHH
Confidence 3455556778876554444 4565554321 12234455567887776666654221111 1111 1233445567
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHhhCChhHH
Q 012365 94 IKDFDSAYSLLDDLKEMNLMPT---ASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKP---DSQTFSYLIHNCSNEEDI 167 (465)
Q Consensus 94 ~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~ 167 (465)
.|+.+-+.-+++ .|..++ ...++ .+...+..|+.+-+..+++ .+..+ +....+.+..++. .+.
T Consensus 90 ~g~~~~v~~Ll~----~ga~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~-~g~- 158 (437)
T 1n11_A 90 IGHTNMVKLLLE----NNANPNLATTAGHT-PLHIAAREGHVETVLALLE----KEASQACMTKKGFTPLHVAAK-YGK- 158 (437)
T ss_dssp HTCHHHHHHHHH----HTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHHHH-TTC-
T ss_pred CCCHHHHHHHHh----CCCCCCCCCCCCCc-HHHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCCCHHHHHHH-cCC-
Confidence 788765555544 343332 22222 3334456677765555443 33222 1111122222211 111
Q ss_pred HHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHH
Q 012365 168 IKYYEQLKSAGGQITKYV--FMALINAYTTCGEFEKARQVVL 207 (465)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~ 207 (465)
.++.+.+.+.|..++... -.+.+...+..|+.+-..-+++
T Consensus 159 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 200 (437)
T 1n11_A 159 VRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP 200 (437)
T ss_dssp HHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGG
T ss_pred HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 235556666665544211 1123445566777776655554
No 282
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=53.77 E-value=51 Score=22.65 Aligned_cols=58 Identities=17% Similarity=0.074 Sum_probs=26.4
Q ss_pred HHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHHcccchhHHHH
Q 012365 262 LNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKDKFKDDEMAME 323 (465)
Q Consensus 262 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 323 (465)
+...|++++|..+.+..- .|+....+..+-.+.|..+.+..-+.++..++.|....+.
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~rlGl~s~le~rL~~la~sg~p~~q~Fa 107 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALCEYRLGLGSALESRLNRLARSQDPRIQTFV 107 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHHHHTCHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHHHhcccHHHHHHHHHHHHhCCCHHHHHHH
Confidence 344455555544443332 3333333333334555555555555555554444444443
No 283
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=53.64 E-value=40 Score=24.42 Aligned_cols=65 Identities=8% Similarity=0.041 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCC
Q 012365 13 SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY--EFNLVRRIYPMICHHNLK 78 (465)
Q Consensus 13 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~ 78 (465)
..+.++.-|...|+.++|...++++...... .......+..++-+.+ ..+.+..++..+.+.|+-
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4567888888899999999999988521111 2233333444444433 245667777777766643
No 284
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=52.09 E-value=57 Score=24.13 Aligned_cols=67 Identities=12% Similarity=0.198 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcH
Q 012365 199 FEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGEL 268 (465)
Q Consensus 199 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 268 (465)
.+.+.+.+++.+....+. -..++..+...+..-.|.++++.+.+.+...+..|..--+..+...|-+
T Consensus 6 ~~~~~~~l~~~g~r~T~q---R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 6 LKEALETLKETGVRITPQ---RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHHHHHHTTCCCCHH---HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHcCCCCCHH---HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 344555555433333332 3556777777777888999999998888777888877777777777654
No 285
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=51.97 E-value=40 Score=27.23 Aligned_cols=75 Identities=8% Similarity=-0.048 Sum_probs=0.0
Q ss_pred hhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCChhhHHHHH
Q 012365 341 VQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVL-SYLWMYKAFLASGNRKSASKLL 419 (465)
Q Consensus 341 ~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~ 419 (465)
++++...|.... ..+-|+.....-|.---.+ +.+..+|..|...|+--... .|......|...|++.+|.++|
T Consensus 100 LErc~~~F~~~~---rYknD~RyLklWl~Ya~~~---~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy 173 (223)
T 4aez_C 100 LERCTREFVRNP---LYKDDVRYLRIWMQYVNYI---DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVY 173 (223)
T ss_dssp HHHHHHHTTTCG---GGTTCHHHHHHHHHHHTTC---SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcccc---cccCCHHHHHHHHHHHHcc---CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q ss_pred hc
Q 012365 420 SK 421 (465)
Q Consensus 420 ~~ 421 (465)
+.
T Consensus 174 ~~ 175 (223)
T 4aez_C 174 QK 175 (223)
T ss_dssp HH
T ss_pred HH
No 286
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=50.31 E-value=66 Score=24.41 Aligned_cols=66 Identities=17% Similarity=0.248 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCcH
Q 012365 200 EKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEA--GCNLEPRAVIALIEHLNSEGEL 268 (465)
Q Consensus 200 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~ 268 (465)
+.+.+.+++.+....+. -..++..+...+..-.|.++++.+.+. +...+..|.---+..+...|-+
T Consensus 18 ~~~~~~L~~~g~r~T~q---R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 18 ERFKKILRQGGLKYTKQ---REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHTCCCCHH---HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHcCCCCCHH---HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 34555555444444332 456778888888888999999999988 7667788877777777777754
No 287
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=49.56 E-value=1.1e+02 Score=25.06 Aligned_cols=90 Identities=10% Similarity=0.025 Sum_probs=58.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhh--CCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012365 52 ILHACEESYEFNLVRRIYPMICH--HNLKP----NSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAG 125 (465)
Q Consensus 52 ll~~~~~~~~~~~a~~~~~~~~~--~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 125 (465)
-+..+....++++|.+++++..+ .++++ +.......+..-.....-.-+..+.+++.. .++...-...+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 46778889999999999988764 22222 111222333333333444455556666633 4567777778899
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 012365 126 YFRKKDVQGALMVLKEMEQ 144 (465)
Q Consensus 126 ~~~~g~~~~a~~~~~~m~~ 144 (465)
+.+.|+.++|.++|-+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 9999999999999977653
No 288
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=49.13 E-value=1.3e+02 Score=25.83 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=11.3
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 012365 52 ILHACEESYEFNLVRRIYPM 71 (465)
Q Consensus 52 ll~~~~~~~~~~~a~~~~~~ 71 (465)
.+...++.|+.+.+..+++.
T Consensus 28 ~L~~Av~~g~~~~V~~LL~~ 47 (337)
T 4g8k_A 28 LLIKAVQNEDVDLVQQLLEG 47 (337)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHC
Confidence 33344566777666665543
No 289
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=47.89 E-value=1e+02 Score=24.52 Aligned_cols=27 Identities=7% Similarity=0.073 Sum_probs=14.8
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCC
Q 012365 88 ISLNVKIKDFDSAYSLLDDLKEMNLMP 114 (465)
Q Consensus 88 i~~~~~~g~~~~a~~~~~~m~~~~~~~ 114 (465)
+...++.|+.+.+..+++.+.+.|..+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 344455566666666666555554333
No 290
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=47.71 E-value=1.3e+02 Score=25.69 Aligned_cols=66 Identities=17% Similarity=0.240 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCC--hhHHHHHHHHHHHcCCCCC
Q 012365 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGR--TSDAIIVYEEIKEAGCNLE 251 (465)
Q Consensus 186 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~p~ 251 (465)
...++.-|...|+.++|.+.++++..+.-....+...+..++-+.++ .+.+.+++..+...|+-+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 45678888888999999999998776533333345555555555433 3456678888887776443
No 291
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=47.59 E-value=32 Score=25.83 Aligned_cols=64 Identities=9% Similarity=0.071 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHhhCCC
Q 012365 13 SYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYE--FNLVRRIYPMICHHNL 77 (465)
Q Consensus 13 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~ 77 (465)
..+.+|.-|...|+.++|...++++...... ...+...+..++-+.++ .+.+..++..+.+.++
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 4567888888899999999999888521111 22333334444444222 4456677777766664
No 292
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=47.28 E-value=34 Score=30.95 Aligned_cols=50 Identities=16% Similarity=0.239 Sum_probs=27.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHH
Q 012365 52 ILHACEESYEFNLVRRIYPMICHHNLKPNSE--TFRSMISLNVKIKDFDSAYSLLD 105 (465)
Q Consensus 52 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~ 105 (465)
.+...+..|+.+-+..+++ .|..++.. .....+...+..|+.+-+.-+++
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~----~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 68 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQ----RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ 68 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHH----TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 4445556778776665554 45444422 12234555667787766555554
No 293
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=46.77 E-value=1.4e+02 Score=25.84 Aligned_cols=125 Identities=10% Similarity=0.092 Sum_probs=63.6
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHH
Q 012365 171 YEQLKSAGGQITKYVFMALINAYTTCGE--------FEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEE 242 (465)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 242 (465)
++.+.+.++++|.....-++..+..... +++|++.=......+..+......+...|.+.+++.+|...|-
T Consensus 82 vevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i- 160 (336)
T 3lpz_A 82 VDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV- 160 (336)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-
Confidence 3444455555555555555554444332 1222222222222223333345667777888888888777662
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHcCCCCCccc-hhhHhhHhhhcCChhHHHHHHHHHHH
Q 012365 243 IKEAGCNLEPRAVIALIEHLNSEGELNRLIQLLEEVHDPDYWMDG-CCRLILHCVRFKQLSSATDLLKQLKD 313 (465)
Q Consensus 243 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~ 313 (465)
.|-.+.+..|..++.-+...+...+ .+. ....+.-|...++...|..+|+...+
T Consensus 161 ---lg~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 161 ---LGTKESPEVLARMEYEWYKQDESHT--------------APLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ---TSCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---hcCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2333344666555555444332111 121 23445555677788888877766554
No 294
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=45.14 E-value=57 Score=26.05 Aligned_cols=53 Identities=11% Similarity=-0.109 Sum_probs=23.1
Q ss_pred HHhHhhhhhhHHHHHHHHHHHcCCCCChhHH--HHHHHHHHhcCChhhHHHHHhccCCC
Q 012365 369 GACVNARDLKRAHLIWKEYENAGLPYNVLSY--LWMYKAFLASGNRKSASKLLSKMPKD 425 (465)
Q Consensus 369 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~ 425 (465)
...+..|+.+-+ +.+.+.|..++.... ..-+....+.|+.+-+.-+++.-.+.
T Consensus 182 ~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 182 HWAVLAGNTTVI----SLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp HHHHHHTCHHHH----HHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred HHHHHcCCHHHH----HHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 334455665543 333444554443211 11223334566666666665554443
No 295
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=44.41 E-value=87 Score=25.00 Aligned_cols=14 Identities=14% Similarity=0.062 Sum_probs=7.3
Q ss_pred HhcCChhhHHHHHh
Q 012365 407 LASGNRKSASKLLS 420 (465)
Q Consensus 407 ~~~g~~~~A~~~~~ 420 (465)
++.|+.+-+.-+++
T Consensus 191 ~~~~~~~~v~~Ll~ 204 (241)
T 1k1a_A 191 SGRGLLPLVRTLVR 204 (241)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 34566555555544
No 296
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=43.77 E-value=98 Score=23.02 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcH
Q 012365 220 KSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGEL 268 (465)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 268 (465)
-..++..+...+.+-.|.++++.+.+.+...+..|..--+..+...|-+
T Consensus 29 R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 29 REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 4567777777778889999999999988777888877777777777654
No 297
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=43.23 E-value=20 Score=31.47 Aligned_cols=18 Identities=0% Similarity=-0.010 Sum_probs=9.1
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 012365 126 YFRKKDVQGALMVLKEME 143 (465)
Q Consensus 126 ~~~~g~~~~a~~~~~~m~ 143 (465)
.+..|+.+-+..+++.-.
T Consensus 91 A~~~g~~~~v~~Ll~~~~ 108 (364)
T 3ljn_A 91 AVMANKTDLVVALVEGAK 108 (364)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhcc
Confidence 344556555555555433
No 298
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=43.09 E-value=1.3e+02 Score=26.15 Aligned_cols=64 Identities=19% Similarity=0.148 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHcCCC
Q 012365 186 FMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHG-RTSDAIIVYEEIKEAGCN 249 (465)
Q Consensus 186 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~~~~ 249 (465)
...++.-|...|+.++|.+.++++..+......+...+..++-+.. .-+.+..++..+.+.|+-
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 4567888999999999999999765443222222333333333322 133456677777766653
No 299
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=41.94 E-value=87 Score=27.30 Aligned_cols=24 Identities=8% Similarity=0.093 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHH
Q 012365 253 RAVIALIEHLNSEGELNRLIQLLE 276 (465)
Q Consensus 253 ~~~~~ll~~~~~~g~~~~a~~~~~ 276 (465)
..+..++..+.+....+.+.++|+
T Consensus 142 ~fl~~vl~~l~~~~g~~~l~~~~~ 165 (339)
T 1ug3_A 142 SLLLEILGLLCKSMGPKKVGTLWR 165 (339)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHH
Confidence 344445555555555555555555
No 300
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=41.82 E-value=79 Score=23.95 Aligned_cols=72 Identities=14% Similarity=0.142 Sum_probs=50.0
Q ss_pred hhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHc--CCCCChhHHHHHHHHHHhcCChhh
Q 012365 342 QIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENA--GLPYNVLSYLWMYKAFLASGNRKS 414 (465)
Q Consensus 342 ~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~~~~ 414 (465)
+.+++-+.+...+.|++++..- ..++..+...++.-.|.++++.+.+. +...+..|.-.-++.+...|-..+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 4444444444337788887753 34556666777888999999999887 656677777777788888886543
No 301
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=40.61 E-value=1.3e+02 Score=23.68 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=9.4
Q ss_pred cCHHHHHHHHHHHHhCC
Q 012365 25 LKVHVALDVVEQMVQGE 41 (465)
Q Consensus 25 g~~~~A~~~~~~m~~~~ 41 (465)
.|++.|+-.+.+|.+.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 45555555555555555
No 302
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.25 E-value=2.1e+02 Score=25.51 Aligned_cols=79 Identities=15% Similarity=0.093 Sum_probs=49.3
Q ss_pred CCchhhhHHhHHHHHhhc---------------CCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHc-----CCCCChh
Q 012365 338 PPDVQIGLDLLQFIKDEL---------------GLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENA-----GLPYNVL 397 (465)
Q Consensus 338 ~~~~~~A~~~~~~m~~~~---------------~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~ 397 (465)
..+.++|++.++++.... ...+-......+...|...|+.+.|..++++.... +++|...
T Consensus 89 ~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~ 168 (393)
T 4b4t_O 89 SKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRIT 168 (393)
T ss_dssp TTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHH
Confidence 367888888887764110 11233445556677788899999999999988742 3333222
Q ss_pred --HHHHHHHHHHhcCChhhHH
Q 012365 398 --SYLWMYKAFLASGNRKSAS 416 (465)
Q Consensus 398 --~~~~l~~~~~~~g~~~~A~ 416 (465)
.|......|.+.+++..+.
T Consensus 169 ~~~y~~~~~~~~~~~~~a~~y 189 (393)
T 4b4t_O 169 NSFYSTNSQYFKFKNDFNSFY 189 (393)
T ss_dssp HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHH
Confidence 4555555666677766543
No 303
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=39.04 E-value=1.2e+02 Score=22.71 Aligned_cols=54 Identities=9% Similarity=0.129 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH
Q 012365 63 NLVRRIYPMICHHNLKPN-SETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTA 116 (465)
Q Consensus 63 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 116 (465)
+...++|..|...|+... ...|......+-..|++.+|.++|+.-++.+-.|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 347889999988887544 567888888888899999999999998888777743
No 304
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=38.70 E-value=1.2e+02 Score=22.41 Aligned_cols=38 Identities=5% Similarity=-0.120 Sum_probs=17.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 012365 94 IKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKD 131 (465)
Q Consensus 94 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 131 (465)
.+..-.|.++++.+.+.+...+..|-.--+..+...|-
T Consensus 34 ~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 34 SMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp CSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 33344455555555444333344444444444444443
No 305
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=38.10 E-value=99 Score=22.81 Aligned_cols=33 Identities=6% Similarity=-0.051 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 012365 98 DSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130 (465)
Q Consensus 98 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 130 (465)
-.|.++++.+.+.+...+..|----+..+...|
T Consensus 34 ~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 34 ATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp BCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 344444444444332333333333333344433
No 306
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=37.94 E-value=39 Score=24.84 Aligned_cols=44 Identities=7% Similarity=0.027 Sum_probs=22.5
Q ss_pred HHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 012365 17 LITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60 (465)
Q Consensus 17 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 60 (465)
++..+...++.-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 44444444445555566665555554445544444445554444
No 307
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=37.70 E-value=1.2e+02 Score=22.45 Aligned_cols=60 Identities=12% Similarity=0.078 Sum_probs=26.2
Q ss_pred HhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 012365 72 ICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDV 132 (465)
Q Consensus 72 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 132 (465)
+.+.|++++. .-..++..+...+..-.|.++++.+.+.+...+..|----+..+...|-+
T Consensus 18 l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 18 IKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3445543332 22233334444444555555665555544334444444444555555443
No 308
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=37.60 E-value=1.5e+02 Score=23.35 Aligned_cols=29 Identities=17% Similarity=0.000 Sum_probs=19.0
Q ss_pred HHHHHhc---ccCHHHHHHHHHHHHhCCCCCC
Q 012365 17 LITYSCD---LLKVHVALDVVEQMVQGELVPS 45 (465)
Q Consensus 17 li~~~~~---~g~~~~A~~~~~~m~~~~~~p~ 45 (465)
+|+++.| -.|++.|+-.+.+|.+.|-.|.
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~ 41 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPL 41 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHH
Confidence 5555544 3677777777777777775543
No 309
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=37.26 E-value=1.2e+02 Score=23.94 Aligned_cols=109 Identities=16% Similarity=0.164 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhh-------------------hh
Q 012365 318 DEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARD-------------------LK 378 (465)
Q Consensus 318 ~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~-------------------~~ 378 (465)
+.-........++........+++.+...+++.+. .|..+-...-.-.+..|.-.-+ ++
T Consensus 18 n~WvlDfyf~~~c~aFR~~r~~dFrq~rdi~eall--~~~~~~~a~~~k~i~icQfL~RI~eG~~LD~~Fd~d~~lTPLE 95 (211)
T 3bqo_A 18 AGWMLDFLCLSLCRAFRDGRSEDFRRTRNSAEAII--HGLSSLTACQLRTIYICQFLTRIAAGKTLDAQFENDERITPLE 95 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HTCSCCCHHHHHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH--hccccccccccchHHHHHHHHHHHcCCCCCCccCCCCCCChHH
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHH-----HHHhcCChhhHHHHHhccCCCCCCh
Q 012365 379 RAHLIWKEYENAGLPYNVLSYLWMYK-----AFLASGNRKSASKLLSKMPKDDPHV 429 (465)
Q Consensus 379 ~A~~~~~~m~~~g~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~m~~~~~~~ 429 (465)
.|+.+|+.+.+. .++-......|+. .|.+.|.+++|.+++++....+.++
T Consensus 96 SAl~v~~~I~~e-~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~ 150 (211)
T 3bqo_A 96 SALMIWGSIEKE-HDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSH 150 (211)
T ss_dssp HHHHHHTTSCSC-CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----C
T ss_pred HHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCc
No 310
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=35.99 E-value=41 Score=26.95 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=9.8
Q ss_pred HHHHHccCcHHHHHHHHHH
Q 012365 259 IEHLNSEGELNRLIQLLEE 277 (465)
Q Consensus 259 l~~~~~~g~~~~a~~~~~~ 277 (465)
+...+..|+.+-+.-+++.
T Consensus 181 L~~A~~~~~~~~v~~Ll~~ 199 (240)
T 3eu9_A 181 LHWAVLAGNTTVISLLLEA 199 (240)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3444455666655555443
No 311
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=35.90 E-value=54 Score=25.41 Aligned_cols=19 Identities=11% Similarity=0.225 Sum_probs=12.6
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 012365 190 INAYTTCGEFEKARQVVLD 208 (465)
Q Consensus 190 ~~~~~~~g~~~~a~~~~~~ 208 (465)
+...+..|+.+....++..
T Consensus 9 L~~A~~~g~~~~v~~ll~~ 27 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQD 27 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTC
T ss_pred HHHHHHhccHHHHHHHHHc
Confidence 3445567778877777764
No 312
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=35.89 E-value=14 Score=30.53 Aligned_cols=56 Identities=4% Similarity=-0.120 Sum_probs=31.6
Q ss_pred HHHHhcccCHHHHHHHHHHHHhCCCCCCHHH-------HHHHHHHHH--hcCCHHHHHHHHHHHh
Q 012365 18 ITYSCDLLKVHVALDVVEQMVQGELVPSTET-------INSILHACE--ESYEFNLVRRIYPMIC 73 (465)
Q Consensus 18 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~~ 73 (465)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 4444567777777777776666555544322 233333332 4566666666666543
No 313
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=35.66 E-value=78 Score=22.84 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=38.2
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcH
Q 012365 221 SALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGEL 268 (465)
Q Consensus 221 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 268 (465)
..++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|-+
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 456777777778889999999999988777888877777777777654
No 314
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=35.13 E-value=3.7e+02 Score=27.25 Aligned_cols=77 Identities=10% Similarity=0.047 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhC----CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 012365 63 NLVRRIYPMICHH----NLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMV 138 (465)
Q Consensus 63 ~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 138 (465)
+.|.+.|+..... .++||.. ..+...-.+.|..++-..+++..... .+..--..++.+++...+.....++
T Consensus 706 ~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ll~aL~~~~d~~~l~~~ 780 (909)
T 4fke_A 706 NLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKLRSALACSNEVWLLNRY 780 (909)
T ss_dssp HHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHHHHHhCCCCCHHHHHHH
Confidence 4455555554432 1344432 12222233446655555566666552 3444455666666666666666666
Q ss_pred HHHHHH
Q 012365 139 LKEMEQ 144 (465)
Q Consensus 139 ~~~m~~ 144 (465)
++....
T Consensus 781 L~~~l~ 786 (909)
T 4fke_A 781 LGYTLN 786 (909)
T ss_dssp HHHTTC
T ss_pred HHHHhC
Confidence 665544
No 315
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=35.12 E-value=43 Score=24.27 Aligned_cols=43 Identities=14% Similarity=0.023 Sum_probs=20.1
Q ss_pred HHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 012365 18 ITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESY 60 (465)
Q Consensus 18 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 60 (465)
+..+...+..-.|.++++.+.+.+...+..|.-..++.+...|
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3334334444455555555555444444444444444444443
No 316
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=34.65 E-value=1e+02 Score=20.82 Aligned_cols=34 Identities=15% Similarity=0.067 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 012365 96 DFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQ 133 (465)
Q Consensus 96 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 133 (465)
..+.|.++++.+...| ...|..++.++...|+..
T Consensus 52 ~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 52 RRDQARQLIIDLETRG----SQALPLFISCLEDTGQDM 85 (97)
T ss_dssp HHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHH
T ss_pred hHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHH
Confidence 3455555555555432 234455555554444433
No 317
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=34.59 E-value=1.7e+02 Score=23.24 Aligned_cols=56 Identities=11% Similarity=0.076 Sum_probs=31.9
Q ss_pred hcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHH
Q 012365 297 RFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIK 352 (465)
Q Consensus 297 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~ 352 (465)
+..+.+.|+-.+.+|.+.+..+...+..++..+...++-.++.-+..|...++...
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~ 102 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFD 102 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 55667777777777777666666666666665555544443333333444444333
No 318
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=34.38 E-value=1.1e+02 Score=22.95 Aligned_cols=54 Identities=15% Similarity=0.258 Sum_probs=25.8
Q ss_pred CchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCC
Q 012365 339 PDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGL 392 (465)
Q Consensus 339 ~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~ 392 (465)
..+++|.+.+..|++.....-.+..||..|..+...-.-.....+|..+++.++
T Consensus 72 ~~y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~LK~~l~~~~l~~FW~~Iv~~~l 125 (152)
T 1rw2_A 72 PYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQLNHFWEIVVQDGI 125 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHSCCHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhHHHHHHHHHHCCc
Confidence 466677777777762222222445566666544321111112445555554433
No 319
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=34.07 E-value=1.4e+02 Score=21.99 Aligned_cols=58 Identities=12% Similarity=0.037 Sum_probs=41.7
Q ss_pred hcCCCCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChh
Q 012365 354 ELGLPPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRK 413 (465)
Q Consensus 354 ~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 413 (465)
+.|++++..-. .++..+...+ .-.|.++++.+.+.+...+..|...-++.+...|-..
T Consensus 12 ~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 12 QRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp TTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 67888877532 3344444555 7789999999998776667777777778888888543
No 320
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=33.70 E-value=1.4e+02 Score=22.06 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=43.3
Q ss_pred hcCCCCcHHHHHHHHHHhHhhh-hhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChh
Q 012365 354 ELGLPPSRKCLDFLLGACVNAR-DLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRK 413 (465)
Q Consensus 354 ~~~~~p~~~~~~~ll~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 413 (465)
..|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-..
T Consensus 10 ~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 10 DAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 66888877643 3444555555 67789999999998866677777777778888888654
No 321
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=33.53 E-value=1.6e+02 Score=22.37 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=23.3
Q ss_pred cCCHHHHHHHHHHHhhCCCCC--CHHHHHHHHH-H-----HhccCCHHHHHHHHHHH
Q 012365 59 SYEFNLVRRIYPMICHHNLKP--NSETFRSMIS-L-----NVKIKDFDSAYSLLDDL 107 (465)
Q Consensus 59 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~m 107 (465)
.|++-++-++++..-...-.+ ....|..||. + ..+.|+...|..++.+.
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~A 101 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTS 101 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 355555555555555443233 2334444444 1 12345555555555554
No 322
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=32.83 E-value=2.7e+02 Score=24.87 Aligned_cols=26 Identities=8% Similarity=-0.119 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012365 118 MYNAIMAGYFRKKDVQGALMVLKEME 143 (465)
Q Consensus 118 ~~~~li~~~~~~g~~~~a~~~~~~m~ 143 (465)
....|...|.+.|+.++..+++...+
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34556677777777777777776653
No 323
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=32.72 E-value=2.4e+02 Score=24.22 Aligned_cols=127 Identities=10% Similarity=0.030 Sum_probs=68.4
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHH
Q 012365 170 YYEQLKSAGGQITKYVFMALINAYTTCGE--------FEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYE 241 (465)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 241 (465)
+.+.+.+.+++++......++..+..... +.+|.+.-.+.......+......+...|.+.|++.+|...|-
T Consensus 79 lvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 79 LLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 34445555666666555555555444221 2233333332222223333347788888899999988887664
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcc---CcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHHHHHH
Q 012365 242 EIKEAGCNLEPRAVIALIEHLNSE---GELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLKQLKD 313 (465)
Q Consensus 242 ~m~~~~~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 313 (465)
. |-.-|+..+..++.-+.+. |...++--+ ....+.-|...++...|..+|+...+
T Consensus 159 ~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf-------------~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 159 L----GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEF-------------FSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp T----SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHH-------------HHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred h----CCCccHHHHHHHHHHHHHhcCCCCcchHHHH-------------HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 1 2111355666666555444 443332211 12334445567888888888887654
No 324
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=32.64 E-value=57 Score=23.78 Aligned_cols=62 Identities=8% Similarity=0.045 Sum_probs=38.3
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHH
Q 012365 36 QMVQGELVPSTETINSILHACEESY-EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFD 98 (465)
Q Consensus 36 ~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 98 (465)
.+.+.|.+++..=. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+.
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 35667777665443 3455555555 56677888888877665566666666666666666543
No 325
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=32.60 E-value=8.1 Score=32.06 Aligned_cols=18 Identities=0% Similarity=0.097 Sum_probs=10.9
Q ss_pred hhcCChhHHHHHHHHHHH
Q 012365 296 VRFKQLSSATDLLKQLKD 313 (465)
Q Consensus 296 ~~~~~~~~a~~~~~~~~~ 313 (465)
++.|+.+-+.-++++-..
T Consensus 233 ~~~g~~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 233 AKTGKIGIFQHIIRREIA 250 (260)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHhCCC
Confidence 366666666666665544
No 326
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=32.52 E-value=1.9e+02 Score=23.12 Aligned_cols=53 Identities=23% Similarity=0.142 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHcC-CCCChh-HH-----HHHHHHHHhcCChhhHHHHHhccCCCCCCh
Q 012365 377 LKRAHLIWKEYENAG-LPYNVL-SY-----LWMYKAFLASGNRKSASKLLSKMPKDDPHV 429 (465)
Q Consensus 377 ~~~A~~~~~~m~~~g-~~p~~~-~~-----~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 429 (465)
++.|+.+|+.+.+.- ++.+.. .. ...+..|.+.|.+++|.+++++....++++
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~ 147 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTT 147 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGG
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCc
Confidence 567888888887642 111111 11 233346788999999999999988876654
No 327
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=32.38 E-value=73 Score=23.36 Aligned_cols=49 Identities=20% Similarity=0.259 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcH
Q 012365 220 KSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGEL 268 (465)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 268 (465)
-..++..+...+..-.|.++++.+.+.+...+..|..--+..+...|-+
T Consensus 16 R~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 16 RAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3556777777777889999999999988778888877777777777754
No 328
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=31.92 E-value=2.2e+02 Score=23.62 Aligned_cols=17 Identities=0% Similarity=-0.209 Sum_probs=8.1
Q ss_pred HHHHhcCCHHHHHHHHH
Q 012365 191 NAYTTCGEFEKARQVVL 207 (465)
Q Consensus 191 ~~~~~~g~~~~a~~~~~ 207 (465)
...+..|+.+-+..+++
T Consensus 36 ~~A~~~g~~~~v~~Ll~ 52 (285)
T 3kea_A 36 YYAIADNNVRLVCTLLN 52 (285)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHh
Confidence 33444555555544444
No 329
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=31.90 E-value=1.5e+02 Score=21.53 Aligned_cols=49 Identities=22% Similarity=0.347 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcH
Q 012365 220 KSALVSALASHG-RTSDAIIVYEEIKEAGCNLEPRAVIALIEHLNSEGEL 268 (465)
Q Consensus 220 ~~~l~~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 268 (465)
-..++..+...+ ..-.|.++++.+.+.+...+..|..--+..+.+.|-+
T Consensus 20 R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 20 RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 456777777776 7888999999999988777888877777777776644
No 330
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=31.72 E-value=1.2e+02 Score=20.59 Aligned_cols=29 Identities=14% Similarity=0.173 Sum_probs=13.4
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 012365 31 LDVVEQMVQGELVPSTETINSILHACEES 59 (465)
Q Consensus 31 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 59 (465)
.++.+++..-|+.|+..+...++..|...
T Consensus 29 e~L~eEfdefGi~~~d~VldKc~ELC~~y 57 (101)
T 2keb_A 29 QQLAEELQIFGLDCEEALIEKLVELCVQY 57 (101)
T ss_dssp HHHHHHHHHHTCBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Confidence 33444444445555555444444444433
No 331
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=31.43 E-value=36 Score=20.06 Aligned_cols=37 Identities=27% Similarity=0.322 Sum_probs=20.2
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCC--hhhHHHHHhccC
Q 012365 382 LIWKEYENAGLPYNVLSYLWMYKAFLASGN--RKSASKLLSKMP 423 (465)
Q Consensus 382 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~ 423 (465)
+.++.+.+.|+++. ....++.+.|. .+.|.+++.+|-
T Consensus 11 qmlq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~~ 49 (54)
T 2cos_A 11 QMLQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKMS 49 (54)
T ss_dssp HHHHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHhc
Confidence 34555555665553 22234445555 677777777664
No 332
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=31.26 E-value=64 Score=25.70 Aligned_cols=20 Identities=10% Similarity=-0.167 Sum_probs=12.5
Q ss_pred HHHHhccCCHHHHHHHHHHH
Q 012365 88 ISLNVKIKDFDSAYSLLDDL 107 (465)
Q Consensus 88 i~~~~~~g~~~~a~~~~~~m 107 (465)
+...++.|+.+....+++.-
T Consensus 10 l~~A~~~g~~~~v~~ll~~~ 29 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILAD 29 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHHhc
Confidence 44556667777776666543
No 333
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=31.02 E-value=1.1e+02 Score=19.67 Aligned_cols=32 Identities=16% Similarity=0.060 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 012365 97 FDSAYSLLDDLKEMNLMPTASMYNAIMAGYFR 128 (465)
Q Consensus 97 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 128 (465)
.-.+.++++.+.+.+...+..|-.-.+..+.+
T Consensus 33 ~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~ 64 (83)
T 2fu4_A 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (83)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 33444455444443322333333333333333
No 334
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=30.69 E-value=1.6e+02 Score=28.49 Aligned_cols=43 Identities=26% Similarity=0.239 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcC
Q 012365 188 ALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASH 230 (465)
Q Consensus 188 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 230 (465)
.+|-.|.++|++++|.++.++...........+...+..|+.+
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC---
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhC
Confidence 3556788999999999999875433332222356667777643
No 335
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=30.09 E-value=32 Score=26.81 Aligned_cols=15 Identities=13% Similarity=0.233 Sum_probs=7.8
Q ss_pred HhccCCHHHHHHHHH
Q 012365 91 NVKIKDFDSAYSLLD 105 (465)
Q Consensus 91 ~~~~g~~~~a~~~~~ 105 (465)
.+..|+.+.+..++.
T Consensus 12 A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 12 AANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHTTCHHHHHHHHT
T ss_pred HHHhccHHHHHHHHH
Confidence 344566555555543
No 336
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=29.26 E-value=3.3e+02 Score=24.77 Aligned_cols=34 Identities=18% Similarity=0.043 Sum_probs=22.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 012365 128 RKKDVQGALMVLKEMEQANVKPDSQTFSYLIHNC 161 (465)
Q Consensus 128 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 161 (465)
+.++.+.|+.++.+|.+.|..|....-..+..+.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~ 300 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIAS 300 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3467888888888888877666544444444443
No 337
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=29.19 E-value=44 Score=20.28 Aligned_cols=29 Identities=10% Similarity=0.060 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 012365 98 DSAYSLLDDLKEMNLMPTASMYNAIMAGY 126 (465)
Q Consensus 98 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 126 (465)
++|++.|.+|....-.++..||...|+..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45556665554333234445566665555
No 338
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=29.13 E-value=69 Score=23.89 Aligned_cols=63 Identities=8% Similarity=0.046 Sum_probs=39.0
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHH
Q 012365 35 EQMVQGELVPSTETINSILHACEESY-EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFD 98 (465)
Q Consensus 35 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 98 (465)
+.+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-|..+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 345667777665443 3445555554 56677888888777665566666666666666666543
No 339
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=28.05 E-value=2.2e+02 Score=26.82 Aligned_cols=73 Identities=12% Similarity=0.100 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 012365 61 EFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRKKDVQGA 135 (465)
Q Consensus 61 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 135 (465)
+........+.+..+=---+..--..++..|.+.|-.+.|.++++.+-..-+ .+...| .-+..|+++|+++.+
T Consensus 496 ~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l-~~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 496 TRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQML-SAHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp CHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred chhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH-HCccHH-HHHHHHHHcCChhhc
Confidence 3444444555544432122344556666677777777777777766654332 222333 444556666666554
No 340
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=27.67 E-value=2.3e+02 Score=22.41 Aligned_cols=35 Identities=14% Similarity=0.008 Sum_probs=19.1
Q ss_pred hcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHh
Q 012365 297 RFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQ 332 (465)
Q Consensus 297 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 332 (465)
+..+.+.|+-.+.+|.+.+ .+...+..++..+...
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsED 60 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYED 60 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhh
Confidence 4556666666666666655 4444444444443333
No 341
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=27.59 E-value=2.3e+02 Score=24.94 Aligned_cols=73 Identities=7% Similarity=0.054 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHhhCCCCCCHHHHH
Q 012365 12 ASYKKLITYSCDLLKVHVALDVVEQMVQGELVPSTETINSILHACEESYE--FNLVRRIYPMICHHNLKPNSETFR 85 (465)
Q Consensus 12 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~ 85 (465)
..-..+|.-|...|+.++|...++++...+.-.....+..+..++ ..++ .+.+-.++..+...++-+......
T Consensus 13 k~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aL-er~~~~re~~~~LL~~L~~~~~ls~~~~~~ 87 (364)
T 3l6a_A 13 KLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSL-DRSDEDKEKASSLISLLKQEGIATSDNFMQ 87 (364)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 345778899999999999999999985311000122333333333 3222 244556666666655433333333
No 342
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=27.52 E-value=5e+02 Score=26.33 Aligned_cols=157 Identities=11% Similarity=-0.033 Sum_probs=80.3
Q ss_pred HHHHHHHhccCC---HHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 012365 85 RSMISLNVKIKD---FDSAYSLLDDLKEMN----LMPTASMYNAIMAGYFRKKDVQGALMVLKEMEQANVKPDSQTFSYL 157 (465)
Q Consensus 85 ~~li~~~~~~g~---~~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 157 (465)
..++...|+.|+ .+.|.+.|+.....+ ++||.. ..+...-.+.|..++-..+++...... +..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHH
Confidence 345555666665 456788888776532 556643 333444456677777677777777643 33334455
Q ss_pred HHhhCCh---hHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH----hcCCCCChHHHHHHHHHHHHc
Q 012365 158 IHNCSNE---EDIIKYYEQLKSAG-GQITKYVFMALINAYTTCGEFEKARQVVLD----AEIPVKSRSEVKSALVSALAS 229 (465)
Q Consensus 158 l~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~~~~~~~~~~~~l~~~~~~ 229 (465)
+.+++.. ..+.++++...... +++. .....+.......-..+.|.+.+.+ +..........+..++.....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~q-d~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~ 843 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQ-DATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTR 843 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGG-GHHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHT
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchh-hHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 5553332 33445555554432 2222 2222222222222335667777765 111111111125677877777
Q ss_pred CCChhHHHHHHHHHHHcC
Q 012365 230 HGRTSDAIIVYEEIKEAG 247 (465)
Q Consensus 230 ~g~~~~a~~~~~~m~~~~ 247 (465)
.-.-++-.+-++...+..
T Consensus 844 ~~~t~~~~~~~~~f~~~~ 861 (909)
T 4fke_A 844 RFSSEFELQQLEQFKKNN 861 (909)
T ss_dssp TCCSHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHHHHhhC
Confidence 665555555566655443
No 343
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=26.95 E-value=1.2e+02 Score=18.86 Aligned_cols=50 Identities=8% Similarity=-0.017 Sum_probs=38.9
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChh
Q 012365 363 CLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRK 413 (465)
Q Consensus 363 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 413 (465)
.++.++..++...-++.+.-.++++.+.| ..+...|.--++.+++..-..
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaReQF~~ 53 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQQFLV 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH
Confidence 45678888888888999999999999987 677777877777766654433
No 344
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=26.89 E-value=1.4e+02 Score=21.30 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=17.7
Q ss_pred CchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHh
Q 012365 339 PDVQIGLDLLQFIKDELGLPPSRKCLDFLLGAC 371 (465)
Q Consensus 339 ~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~ 371 (465)
..+++|.+.+..|++.....-.+..||..|..+
T Consensus 41 ~~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~L 73 (120)
T 1q2z_A 41 PYFMKSIDCIRAFREEAIKFSEEQRFNNFLKAL 73 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 356666666666662222223555666666554
No 345
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=26.85 E-value=1.2e+02 Score=20.57 Aligned_cols=66 Identities=15% Similarity=0.089 Sum_probs=45.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 012365 32 DVVEQMVQGELVPSTETINSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSL 103 (465)
Q Consensus 32 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 103 (465)
.+++.+.+.|+- +......+-. .......++|.++++.+.++| +..|..++.++...|...-|..+
T Consensus 25 ~vld~L~~~~vl-t~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 25 QLWDVLLSRELF-RPHMIEDIQR-AGSGSRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp TTHHHHHHTTSS-CHHHHHHHHT-STTCCHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHHHh-ccCCChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHHHHH
Confidence 478888888876 5555544322 111247899999999998876 35788888888777776665544
No 346
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=26.38 E-value=2.5e+02 Score=22.48 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=9.8
Q ss_pred HHhccCCHHHHHHHHHHHHH
Q 012365 90 LNVKIKDFDSAYSLLDDLKE 109 (465)
Q Consensus 90 ~~~~~g~~~~a~~~~~~m~~ 109 (465)
.|.+.|.+++|.+++++...
T Consensus 123 VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHST
T ss_pred HHHHhcchHHHHHHHHHHhc
Confidence 34445555555555554443
No 347
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.61 E-value=5.6e+02 Score=26.13 Aligned_cols=28 Identities=14% Similarity=0.116 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 012365 118 MYNAIMAGYFRKKDVQGALMVLKEMEQA 145 (465)
Q Consensus 118 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 145 (465)
=|..++..+-+.+-++.+.++-+...+.
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 4677888888888888888887777653
No 348
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=24.42 E-value=3.4e+02 Score=23.36 Aligned_cols=51 Identities=14% Similarity=0.231 Sum_probs=28.3
Q ss_pred chhhhHHhHHHHHhhcCCCCcHH--HHHHHHHHhHhhhhhhHHHHHHHHHHHcC
Q 012365 340 DVQIGLDLLQFIKDELGLPPSRK--CLDFLLGACVNARDLKRAHLIWKEYENAG 391 (465)
Q Consensus 340 ~~~~A~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 391 (465)
+..+.+++-.-+- ..+++|... +...-|..+.+.+++..|-.+-+++.+.+
T Consensus 185 ~~kR~lELAAYFT-~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 185 NTVRMLELAAYFT-KAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp CHHHHHHHHHHGG-GSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHhc-cCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 3344455555554 455555432 33445555666667776666666666653
No 349
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.15 E-value=4.4e+02 Score=24.56 Aligned_cols=65 Identities=8% Similarity=0.006 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCC-CCCH--HHHH-HHHHHHHhcCCHHHHHHHHHHHhhC
Q 012365 11 SASYKKLITYSCDLLKVHVALDVVEQMVQGEL-VPST--ETIN-SILHACEESYEFNLVRRIYPMICHH 75 (465)
Q Consensus 11 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~--~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~ 75 (465)
...+|.+++.|...+.++.|..+.....--.. .+|. ..|. -+.+...-.+++.+|.+.+....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 35677777777777888888877776631100 1111 1222 1234445567777777777776654
No 350
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.10 E-value=3.7e+02 Score=27.49 Aligned_cols=47 Identities=9% Similarity=-0.231 Sum_probs=28.0
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChh----HHHHHHHHHHhc
Q 012365 363 CLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVL----SYLWMYKAFLAS 409 (465)
Q Consensus 363 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~l~~~~~~~ 409 (465)
-|..++..+-+.+-++.+.++-+...+.--+.|.. .|..+.++.+..
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 56667777777777777777777777642222332 444555544443
No 351
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=23.62 E-value=1.8e+02 Score=22.30 Aligned_cols=57 Identities=7% Similarity=-0.045 Sum_probs=46.2
Q ss_pred CCcHHHHHHHHHHhHhhhhhhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhH
Q 012365 358 PPSRKCLDFLLGACVNARDLKRAHLIWKEYENAGLPYNVLSYLWMYKAFLASGNRKSA 415 (465)
Q Consensus 358 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 415 (465)
.|....++.++..++...-++.+.-++.+..+.| ..+..+|.--++.+++..-+..|
T Consensus 108 ~~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaReQF~~ra 164 (174)
T 2p22_A 108 VAKTDGLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELARQQFLVRW 164 (174)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 3445567999999999999999999999999998 67888888888877776655544
No 352
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=23.44 E-value=2.5e+02 Score=21.46 Aligned_cols=25 Identities=8% Similarity=-0.000 Sum_probs=10.9
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCC
Q 012365 88 ISLNVKIKDFDSAYSLLDDLKEMNL 112 (465)
Q Consensus 88 i~~~~~~g~~~~a~~~~~~m~~~~~ 112 (465)
+...+..|+.+.-.++.+.+.+.|.
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~Ga 66 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKGA 66 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCcchHHHHHHHHHHCCC
Confidence 3333444444443444444444443
No 353
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=23.31 E-value=2.7e+02 Score=21.88 Aligned_cols=56 Identities=13% Similarity=0.061 Sum_probs=35.2
Q ss_pred hcCChhHHHHHHHHHHHcccchhHHHHHHHHHHHHhhhcCCCCchhhhHHhHHHHH
Q 012365 297 RFKQLSSATDLLKQLKDKFKDDEMAMEYHFSEIFCQIATTDPPDVQIGLDLLQFIK 352 (465)
Q Consensus 297 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~m~ 352 (465)
+..+.+.|+-.+.+|.+.+..+...+..++..+...++-.++.-+..|...++...
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~ 74 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFT 74 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 66778888888888888777777777777766655554443333333444443333
No 354
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=22.99 E-value=2.5e+02 Score=21.31 Aligned_cols=31 Identities=6% Similarity=0.006 Sum_probs=14.2
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCC
Q 012365 220 KSALVSALASHGRTSDAIIVYEEIKEAGCNL 250 (465)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 250 (465)
|......+-..|++.+|.++|..-.+.+..|
T Consensus 99 Y~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 99 YISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4444444444444444444444444444443
No 355
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.82 E-value=1.2e+02 Score=17.81 Aligned_cols=11 Identities=27% Similarity=0.404 Sum_probs=5.8
Q ss_pred cCChhhHHHHH
Q 012365 409 SGNRKSASKLL 419 (465)
Q Consensus 409 ~g~~~~A~~~~ 419 (465)
.|+.+.|.+++
T Consensus 35 ~Gdv~~Ave~L 45 (54)
T 2dah_A 35 GGDVDAAVEKL 45 (54)
T ss_dssp TSCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 45555555544
No 356
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=22.23 E-value=3e+02 Score=21.92 Aligned_cols=71 Identities=17% Similarity=0.152 Sum_probs=49.1
Q ss_pred CchhhhHHhHHHHHhhcCCCCcHHHHHHHHHHhHhhhhh-----hHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 012365 339 PDVQIGLDLLQFIKDELGLPPSRKCLDFLLGACVNARDL-----KRAHLIWKEYENAGLPYNVLSYLWMYKAFLASG 410 (465)
Q Consensus 339 ~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~-----~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 410 (465)
++.+.|+-.+.+|. +.|-.|....-..++-+.-..|.. ..|...++.....|.|--.......+--++.+-
T Consensus 49 SDpDAALywLaRMl-~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~LaqaviyLA~AP 124 (213)
T 3ctd_A 49 SDPDATLYWLANMV-EAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLFFLSQASLYLAISP 124 (213)
T ss_dssp TCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC
Confidence 78999999999999 888888777666677676666653 346667777777886655554444444444443
No 357
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=22.20 E-value=4e+02 Score=23.39 Aligned_cols=64 Identities=14% Similarity=0.219 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHcCC
Q 012365 185 VFMALINAYTTCGEFEKARQVVLDAEIPVKS-RSEVKSALVSALASHGR-TSDAIIVYEEIKEAGC 248 (465)
Q Consensus 185 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~-~~~a~~~~~~m~~~~~ 248 (465)
....++.-|...|+.++|.+.++++..+..- ....+..+..++-+... -+.+..++..+...++
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ 79 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGI 79 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCC
Confidence 3456788888889999999999887655322 12223333333333211 1334556666666554
No 358
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.92 E-value=2e+02 Score=20.37 Aligned_cols=40 Identities=8% Similarity=-0.021 Sum_probs=16.9
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012365 104 LDDLKEMNLMPTASMYNAIMAGYFRKKDVQGALMVLKEME 143 (465)
Q Consensus 104 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 143 (465)
|+.+....+.|++..--.-+......++++.|.++...+.
T Consensus 49 fdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~ 88 (118)
T 2yru_A 49 REQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLM 88 (118)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444443443333322223333444555555555554444
No 359
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=21.81 E-value=2e+02 Score=19.62 Aligned_cols=31 Identities=13% Similarity=0.145 Sum_probs=14.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 012365 100 AYSLLDDLKEMNLMPTASMYNAIMAGYFRKK 130 (465)
Q Consensus 100 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 130 (465)
|.++.+++...|+.|+..+...++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 3444444444555555555555554444433
No 360
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=21.78 E-value=1.6e+02 Score=21.58 Aligned_cols=17 Identities=12% Similarity=0.274 Sum_probs=9.6
Q ss_pred HHHHhcCCHHHHHHHHH
Q 012365 191 NAYTTCGEFEKARQVVL 207 (465)
Q Consensus 191 ~~~~~~g~~~~a~~~~~ 207 (465)
...++.|+.+....+++
T Consensus 13 ~~A~~~g~~~~v~~ll~ 29 (165)
T 3twr_A 13 LEAAKAGDVETVKKLCT 29 (165)
T ss_dssp HHHHHHTCHHHHHHHCC
T ss_pred HHHHHhCCHHHHHHHHH
Confidence 34455566666666654
No 361
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=21.60 E-value=4.4e+02 Score=23.58 Aligned_cols=92 Identities=9% Similarity=0.023 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCC---HHHHHHHHHHHhhCC----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 012365 48 TINSILHACEESYE---FNLVRRIYPMICHHN----LKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYN 120 (465)
Q Consensus 48 ~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 120 (465)
.-..++...|..|+ .+.|.+.|+.....+ ++||... .+...-.+ ..++-..+++.... ..+..--.
T Consensus 199 lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~--~Vy~~~~~--~~~~~~~l~~~y~~---s~~~~ek~ 271 (419)
T 3rjo_A 199 LRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTL--AVFAVGAQ--STEGWDFLYSKYQF---SLSSTEKS 271 (419)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHH--HHHHHHTT--SHHHHHHHHHHHHH---CCCHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcce--eEEeeeeC--CHHHHHHHHHHHhc---CCCHHHHH
Confidence 33445555555554 445556666554422 4444321 11111111 23334455555554 24555566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC
Q 012365 121 AIMAGYFRKKDVQGALMVLKEMEQAN 146 (465)
Q Consensus 121 ~li~~~~~~g~~~~a~~~~~~m~~~~ 146 (465)
.++.+++...+.....++++......
T Consensus 272 ~ll~aL~~s~d~~ll~~~L~~~l~~~ 297 (419)
T 3rjo_A 272 QIEFALCRTQNKEKLQWLLDESFKGD 297 (419)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCCCHHHHHHHHHHHhCCC
Confidence 67777777777777777776666544
No 362
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.53 E-value=2.7e+02 Score=21.08 Aligned_cols=61 Identities=11% Similarity=0.088 Sum_probs=38.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 012365 83 TFRSMISLNVKIKDFDSAYSLLDDLKEMNLMP--TASMYNAIMA-G-----YFRKKDVQGALMVLKEMEQ 144 (465)
Q Consensus 83 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~m~~ 144 (465)
.|..-+..|-. |++=+|-++|+..=...-.+ ....|..||. . ..+.|+...|..++.+...
T Consensus 35 ~~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444444444 88888888888764332234 4456666666 2 2357888888888888764
No 363
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=20.54 E-value=3.9e+02 Score=22.55 Aligned_cols=249 Identities=12% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 012365 50 NSILHACEESYEFNLVRRIYPMICHHNLKPNSETFRSMISLNVKIKDFDSAYSLLDDLKEMNLMPTASMYNAIMAGYFRK 129 (465)
Q Consensus 50 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 129 (465)
...+...++.|+.+.+..++.. ....+......-.+.+...+..|+.+-+..+++.-.... .+|...++.|..+....
T Consensus 25 ~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g 102 (351)
T 3utm_A 25 KDELLEAARSGNEEKLMALLTP-LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH-AKDKGGLVPLHNACSYG 102 (351)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCT-TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTT
T ss_pred chhHHHHHHcCCHHHHHHHHHh-cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCcHHHHHHHCC
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHhhCChhHHHHHHHHHHHcCCCCCH-----------------------
Q 012365 130 KDVQGALMVLKEMEQANVKPDSQ---TFSYLIHNCSNEEDIIKYYEQLKSAGGQITK----------------------- 183 (465)
Q Consensus 130 g~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 183 (465)
. .++++.+.+.|..++.. -++.+..++.... .++.+.+.+.|..|+.
T Consensus 103 ~-----~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~ 175 (351)
T 3utm_A 103 H-----YEVTELLLKHGACVNAMDLWQFTPLHEAASKNR--VEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTY 175 (351)
T ss_dssp C-----HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC--HHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHH
T ss_pred C-----HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC--HHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHh
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCHHHH--HHHHHH
Q 012365 184 YVFMALINAYTTCGEFEKARQVVLDAEIPVKSRSEVKSALVSALASHGRTSDAIIVYEEIKEAGCNLEPRAV--IALIEH 261 (465)
Q Consensus 184 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--~~ll~~ 261 (465)
.....-+...+..++.+....++............-.+.+..+..... ..-.++.+.+.+.|..++.... .+.+..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~--~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~ 253 (351)
T 3utm_A 176 EFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLH--PKRKQVAELLLRKGANVNEKNKDFMTPLHV 253 (351)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCS--TTHHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred hhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhC--ccHHHHHHHHHHcCCCcCCcCCCCCCHHHH
Q ss_pred HHccCcHHHHHHHHHHHcCCCCCccchhhHhhHhhhcCChhHHHHHHH
Q 012365 262 LNSEGELNRLIQLLEEVHDPDYWMDGCCRLILHCVRFKQLSSATDLLK 309 (465)
Q Consensus 262 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 309 (465)
.+..|+.+-+.-+++.-...+..-..-...+...+..|+.+-+.-+++
T Consensus 254 A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~ 301 (351)
T 3utm_A 254 AAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLS 301 (351)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
No 364
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=20.29 E-value=68 Score=26.49 Aligned_cols=190 Identities=14% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCC-------CHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCC-------
Q 012365 85 RSMISLNVKIKDFDSAYSLLDDLKEMNLMP-------TASMYNAIMAGYFR--KKDVQGALMVLKEMEQANVK------- 148 (465)
Q Consensus 85 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-------~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~------- 148 (465)
...+...++.|+.+.+..+++...+.+... +..-++.|..+... .|+.+-+.-+++.-...+..
T Consensus 14 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~ 93 (273)
T 2pnn_A 14 RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNAS 93 (273)
T ss_dssp HHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCC
T ss_pred chHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcc
Q ss_pred ---CCHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCCHHH----------------HHHHHHHHHhcCCHHHHHHHHH--
Q 012365 149 ---PDSQTFSYLIHNCSNEEDIIKYYEQLKSAGGQITKYV----------------FMALINAYTTCGEFEKARQVVL-- 207 (465)
Q Consensus 149 ---p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~l~~~~~~~g~~~~a~~~~~-- 207 (465)
.|..-.+.+..++.... .++.+.+.+.|..++... -.+.+...+..|+.+-+.-+++
T Consensus 94 ~~~~d~~g~tpL~~A~~~g~--~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 171 (273)
T 2pnn_A 94 YTDSYYKGQTALHIAIERRN--MTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNS 171 (273)
T ss_dssp CCSTTTTTCCHHHHHHHTTC--HHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCS
T ss_pred cccccCCCCCHHHHHHHcCC--HHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Q ss_pred -H-hcCCCCChHHHHHHHHHHHHcCCChhHH----HHHHHHHHHcCCCCC---------HHHHHHHHHHHHccCcHHHHH
Q 012365 208 -D-AEIPVKSRSEVKSALVSALASHGRTSDA----IIVYEEIKEAGCNLE---------PRAVIALIEHLNSEGELNRLI 272 (465)
Q Consensus 208 -~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a----~~~~~~m~~~~~~p~---------~~~~~~ll~~~~~~g~~~~a~ 272 (465)
. ......+... ++.|..+.........- .++++.+.+.|..++ ...-.+-+...++.|+.+-+.
T Consensus 172 ~~gad~~~~d~~g-~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~ 250 (273)
T 2pnn_A 172 WQPADISARDSVG-NTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLA 250 (273)
T ss_dssp SCCCCTTCCCTTS-CCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred cCCCCceeeCCCC-CcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHH
Q ss_pred HHHHH
Q 012365 273 QLLEE 277 (465)
Q Consensus 273 ~~~~~ 277 (465)
.+++.
T Consensus 251 ~Ll~~ 255 (273)
T 2pnn_A 251 YILQR 255 (273)
T ss_dssp HHHHH
T ss_pred HHHHC
Done!