Query 012367
Match_columns 465
No_of_seqs 599 out of 3100
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 01:54:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012367.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012367hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0283 WD40 repeat-containing 100.0 9.9E-59 2.1E-63 469.4 30.3 438 6-462 6-531 (712)
2 KOG0286 G-protein beta subunit 100.0 6.1E-30 1.3E-34 231.3 21.4 230 214-454 47-287 (343)
3 KOG0263 Transcription initiati 100.0 1.1E-30 2.4E-35 263.7 17.9 202 208-462 437-648 (707)
4 KOG0272 U4/U6 small nuclear ri 100.0 1.8E-30 3.8E-35 245.1 14.0 261 182-463 184-459 (459)
5 KOG0272 U4/U6 small nuclear ri 100.0 4.5E-30 9.7E-35 242.3 15.6 232 220-463 173-418 (459)
6 KOG0271 Notchless-like WD40 re 100.0 1.2E-29 2.6E-34 236.6 17.6 257 182-453 124-464 (480)
7 KOG0271 Notchless-like WD40 re 100.0 4.5E-29 9.7E-34 232.8 18.1 168 212-425 105-280 (480)
8 KOG0279 G protein beta subunit 100.0 2.9E-28 6.2E-33 219.3 20.1 198 212-462 53-261 (315)
9 KOG0263 Transcription initiati 100.0 1.9E-28 4.1E-33 247.5 15.7 166 211-422 482-650 (707)
10 KOG0285 Pleiotropic regulator 99.9 1.1E-26 2.4E-31 215.1 18.6 201 210-463 139-348 (460)
11 KOG0273 Beta-transducin family 99.9 4.4E-26 9.5E-31 218.0 23.1 230 213-455 267-508 (524)
12 KOG0295 WD40 repeat-containing 99.9 7.7E-27 1.7E-31 216.8 15.8 328 105-462 5-363 (406)
13 KOG0286 G-protein beta subunit 99.9 8.2E-26 1.8E-30 204.6 20.6 193 214-460 137-342 (343)
14 KOG0279 G protein beta subunit 99.9 3.7E-26 8.1E-31 205.7 18.3 210 205-462 88-312 (315)
15 KOG0281 Beta-TrCP (transducin 99.9 5.4E-27 1.2E-31 216.4 10.6 253 191-461 213-475 (499)
16 KOG0265 U5 snRNP-specific prot 99.9 3.8E-25 8.3E-30 201.0 19.7 197 215-462 40-245 (338)
17 KOG0266 WD40 repeat-containing 99.9 6.8E-25 1.5E-29 225.1 23.3 204 214-462 195-408 (456)
18 KOG0266 WD40 repeat-containing 99.9 1.5E-24 3.3E-29 222.6 23.2 201 215-463 151-364 (456)
19 KOG0291 WD40-repeat-containing 99.9 2.4E-24 5.1E-29 216.2 21.7 185 217-454 345-534 (893)
20 KOG0313 Microtubule binding pr 99.9 8.8E-25 1.9E-29 204.2 16.5 248 190-461 164-416 (423)
21 KOG0284 Polyadenylation factor 99.9 2.6E-25 5.7E-30 209.3 12.2 212 190-461 155-378 (464)
22 PTZ00421 coronin; Provisional 99.9 1.8E-23 3.9E-28 214.5 26.6 173 217-428 70-252 (493)
23 PTZ00420 coronin; Provisional 99.9 2.1E-23 4.6E-28 215.3 26.6 211 214-462 66-292 (568)
24 KOG0273 Beta-transducin family 99.9 4.7E-24 1E-28 204.1 18.6 163 213-421 350-523 (524)
25 KOG0316 Conserved WD40 repeat- 99.9 6.6E-24 1.4E-28 187.0 17.8 183 215-454 10-197 (307)
26 KOG0645 WD40 repeat protein [G 99.9 8.5E-23 1.8E-27 183.4 25.0 205 213-421 5-225 (312)
27 KOG0282 mRNA splicing factor [ 99.9 5.4E-25 1.2E-29 211.3 11.1 173 209-425 201-376 (503)
28 KOG0295 WD40 repeat-containing 99.9 9E-24 1.9E-28 196.5 18.5 177 212-434 183-376 (406)
29 KOG0292 Vesicle coat complex C 99.9 6E-24 1.3E-28 216.2 18.5 201 210-462 39-279 (1202)
30 KOG0284 Polyadenylation factor 99.9 1.1E-24 2.5E-29 205.0 11.7 182 216-451 132-317 (464)
31 KOG0318 WD40 repeat stress pro 99.9 1.1E-22 2.5E-27 197.0 24.1 233 219-464 232-603 (603)
32 KOG0315 G-protein beta subunit 99.9 5.2E-23 1.1E-27 182.7 19.9 196 214-463 75-288 (311)
33 KOG0315 G-protein beta subunit 99.9 2.9E-23 6.3E-28 184.3 18.1 212 191-455 16-230 (311)
34 KOG0293 WD40 repeat-containing 99.9 3.3E-23 7.1E-28 195.4 18.4 257 144-462 157-424 (519)
35 KOG0310 Conserved WD40 repeat- 99.9 1.3E-22 2.9E-27 195.3 19.9 222 169-452 64-291 (487)
36 KOG0265 U5 snRNP-specific prot 99.9 6.6E-23 1.4E-27 186.5 16.7 231 181-463 55-296 (338)
37 KOG0276 Vesicle coat complex C 99.9 2.6E-23 5.6E-28 204.9 14.3 174 208-425 83-261 (794)
38 KOG0277 Peroxisomal targeting 99.9 2E-22 4.2E-27 179.6 18.5 191 221-461 59-263 (311)
39 KOG0318 WD40 repeat stress pro 99.9 1.5E-21 3.2E-26 189.4 25.5 211 210-426 47-270 (603)
40 KOG0641 WD40 repeat protein [G 99.9 2.3E-21 4.9E-26 170.0 23.1 207 216-425 83-307 (350)
41 KOG0319 WD40-repeat-containing 99.9 6.2E-23 1.4E-27 205.9 15.3 185 191-421 430-619 (775)
42 PLN00181 protein SPA1-RELATED; 99.9 2.5E-21 5.5E-26 212.6 29.3 239 216-461 477-736 (793)
43 KOG0296 Angio-associated migra 99.9 5.3E-22 1.1E-26 184.9 19.8 261 182-463 73-398 (399)
44 KOG0291 WD40-repeat-containing 99.9 5.4E-22 1.2E-26 199.4 19.6 249 162-425 334-616 (893)
45 KOG0643 Translation initiation 99.9 1.6E-21 3.4E-26 174.9 20.1 186 217-454 5-204 (327)
46 KOG0772 Uncharacterized conser 99.9 3.6E-22 7.9E-27 193.0 16.4 232 213-451 158-420 (641)
47 cd00200 WD40 WD40 domain, foun 99.9 1.6E-20 3.4E-25 178.0 27.6 224 215-452 2-231 (289)
48 KOG0319 WD40-repeat-containing 99.9 6.3E-22 1.4E-26 198.7 18.4 222 208-434 352-589 (775)
49 KOG0276 Vesicle coat complex C 99.9 6.8E-22 1.5E-26 194.9 17.8 235 215-462 6-256 (794)
50 KOG0275 Conserved WD40 repeat- 99.9 4.1E-23 8.8E-28 189.3 7.8 166 220-423 211-380 (508)
51 KOG2096 WD40 repeat protein [G 99.9 2.7E-21 5.8E-26 177.3 19.1 225 195-421 59-308 (420)
52 KOG0640 mRNA cleavage stimulat 99.9 2.9E-22 6.3E-27 182.9 12.7 217 213-462 103-334 (430)
53 KOG0289 mRNA splicing factor [ 99.9 3.1E-21 6.6E-26 183.3 19.4 197 208-456 247-448 (506)
54 KOG0264 Nucleosome remodeling 99.9 1.1E-21 2.4E-26 187.6 15.6 210 213-463 168-404 (422)
55 KOG0277 Peroxisomal targeting 99.9 6.4E-22 1.4E-26 176.3 12.9 201 212-463 94-308 (311)
56 KOG0306 WD40-repeat-containing 99.9 2E-21 4.2E-26 195.3 17.6 221 207-428 439-671 (888)
57 PTZ00421 coronin; Provisional 99.9 1.1E-20 2.5E-25 193.9 23.7 191 214-456 117-319 (493)
58 KOG0285 Pleiotropic regulator 99.9 3.3E-21 7.1E-26 179.1 16.3 223 189-425 167-393 (460)
59 KOG0274 Cdc4 and related F-box 99.9 1.1E-20 2.5E-25 194.4 22.1 231 216-463 243-482 (537)
60 cd00200 WD40 WD40 domain, foun 99.9 9.6E-20 2.1E-24 172.6 25.8 224 214-452 43-273 (289)
61 KOG0645 WD40 repeat protein [G 99.9 1.7E-20 3.6E-25 168.8 18.7 201 212-461 95-309 (312)
62 KOG1446 Histone H3 (Lys4) meth 99.9 1.3E-19 2.9E-24 166.5 25.0 240 211-463 3-302 (311)
63 KOG0310 Conserved WD40 repeat- 99.9 6E-21 1.3E-25 183.9 16.8 186 214-451 60-249 (487)
64 KOG0643 Translation initiation 99.9 1E-20 2.2E-25 169.8 16.8 235 214-452 44-299 (327)
65 KOG0288 WD40 repeat protein Ti 99.9 3.5E-21 7.5E-26 181.9 13.8 244 191-454 193-445 (459)
66 KOG0300 WD40 repeat-containing 99.9 9.8E-21 2.1E-25 173.3 16.1 216 209-434 177-399 (481)
67 KOG0275 Conserved WD40 repeat- 99.9 1.4E-21 3E-26 179.3 10.4 218 182-452 222-491 (508)
68 KOG0282 mRNA splicing factor [ 99.9 2.8E-21 6E-26 185.9 12.9 186 212-451 248-485 (503)
69 KOG0973 Histone transcription 99.9 2E-20 4.4E-25 195.5 19.0 203 216-453 63-338 (942)
70 KOG0647 mRNA export protein (c 99.9 4.6E-20 9.9E-25 168.2 18.9 199 220-462 25-280 (347)
71 KOG0646 WD40 repeat protein [G 99.9 2E-20 4.4E-25 179.4 17.4 184 205-425 106-311 (476)
72 KOG1407 WD40 repeat protein [F 99.9 2E-20 4.3E-25 167.4 15.9 163 216-422 14-220 (313)
73 PLN00181 protein SPA1-RELATED; 99.8 1.3E-19 2.9E-24 199.0 25.4 200 213-420 566-792 (793)
74 KOG4283 Transcription-coupled 99.8 8.8E-20 1.9E-24 165.7 19.3 214 219-462 40-275 (397)
75 KOG0283 WD40 repeat-containing 99.8 2.7E-20 5.8E-25 190.2 17.8 198 212-462 359-575 (712)
76 KOG0305 Anaphase promoting com 99.8 1E-19 2.2E-24 181.5 21.3 230 221-461 216-459 (484)
77 KOG0281 Beta-TrCP (transducin 99.8 4.3E-21 9.3E-26 177.6 10.6 192 221-425 196-392 (499)
78 KOG0294 WD40 repeat-containing 99.8 9.9E-20 2.2E-24 166.9 19.3 195 213-462 34-280 (362)
79 KOG0296 Angio-associated migra 99.8 1.9E-19 4.2E-24 167.9 20.0 164 216-425 58-224 (399)
80 KOG0278 Serine/threonine kinas 99.8 3.3E-20 7.2E-25 165.0 14.1 191 220-462 98-296 (334)
81 KOG0299 U3 snoRNP-associated p 99.8 1E-19 2.3E-24 174.2 18.6 220 219-453 199-438 (479)
82 KOG0278 Serine/threonine kinas 99.8 1.5E-19 3.2E-24 160.9 17.9 164 215-425 136-301 (334)
83 KOG0316 Conserved WD40 repeat- 99.8 5.8E-20 1.3E-24 162.2 15.1 180 192-427 36-219 (307)
84 KOG0302 Ribosome Assembly prot 99.8 8.2E-20 1.8E-24 170.9 16.0 210 219-463 148-378 (440)
85 KOG0264 Nucleosome remodeling 99.8 1.1E-19 2.4E-24 174.0 16.1 202 220-462 122-346 (422)
86 KOG0293 WD40 repeat-containing 99.8 4E-20 8.7E-25 174.6 12.9 238 182-423 233-515 (519)
87 KOG0267 Microtubule severing p 99.8 1E-20 2.2E-25 189.6 9.0 183 217-452 65-250 (825)
88 PTZ00420 coronin; Provisional 99.8 6E-19 1.3E-23 182.4 22.4 125 301-426 66-202 (568)
89 KOG0292 Vesicle coat complex C 99.8 7.8E-20 1.7E-24 186.5 14.1 160 218-423 5-167 (1202)
90 KOG0313 Microtubule binding pr 99.8 2.3E-19 5.1E-24 168.1 15.9 204 213-463 135-376 (423)
91 KOG0302 Ribosome Assembly prot 99.8 1.3E-19 2.7E-24 169.7 14.1 167 212-421 201-378 (440)
92 KOG0640 mRNA cleavage stimulat 99.8 1.5E-19 3.2E-24 165.3 13.4 170 215-428 165-342 (430)
93 KOG0269 WD40 repeat-containing 99.8 1.1E-19 2.4E-24 183.4 13.9 190 225-462 90-295 (839)
94 KOG0268 Sof1-like rRNA process 99.8 1.1E-19 2.4E-24 169.3 12.2 249 190-462 84-344 (433)
95 KOG0303 Actin-binding protein 99.8 7.7E-19 1.7E-23 165.3 16.9 205 218-461 77-292 (472)
96 KOG0305 Anaphase promoting com 99.8 6.2E-19 1.4E-23 175.8 17.1 161 217-423 296-463 (484)
97 KOG1332 Vesicle coat complex C 99.8 4.3E-19 9.3E-24 157.5 13.7 168 213-423 47-243 (299)
98 KOG0973 Histone transcription 99.8 6.7E-19 1.4E-23 184.3 17.5 200 221-456 12-235 (942)
99 KOG0269 WD40 repeat-containing 99.8 3.5E-19 7.5E-24 179.9 14.6 203 192-450 107-319 (839)
100 KOG0268 Sof1-like rRNA process 99.8 1.4E-19 3.1E-24 168.5 10.8 229 217-462 61-301 (433)
101 KOG0301 Phospholipase A2-activ 99.8 8.8E-19 1.9E-23 175.2 16.8 160 210-421 89-249 (745)
102 KOG0306 WD40-repeat-containing 99.8 2.5E-18 5.3E-23 173.2 20.0 220 216-451 367-603 (888)
103 KOG1332 Vesicle coat complex C 99.8 2.3E-19 5.1E-24 159.2 10.6 186 218-451 7-218 (299)
104 KOG0274 Cdc4 and related F-box 99.8 7.4E-18 1.6E-22 173.7 22.0 185 220-462 206-399 (537)
105 KOG0288 WD40 repeat protein Ti 99.8 1.8E-18 3.8E-23 163.8 14.6 202 208-418 247-458 (459)
106 KOG0301 Phospholipase A2-activ 99.8 2.9E-18 6.3E-23 171.5 16.8 173 189-422 116-289 (745)
107 KOG0294 WD40 repeat-containing 99.8 1.2E-17 2.5E-22 153.4 18.7 186 186-425 54-285 (362)
108 KOG1407 WD40 repeat protein [F 99.8 1.7E-17 3.7E-22 148.7 19.1 197 215-412 57-293 (313)
109 KOG0289 mRNA splicing factor [ 99.8 1.5E-17 3.3E-22 158.3 19.5 165 214-422 295-463 (506)
110 KOG2106 Uncharacterized conser 99.8 5.1E-17 1.1E-21 157.3 22.8 230 216-463 281-520 (626)
111 KOG0308 Conserved WD40 repeat- 99.8 1.5E-18 3.3E-23 172.3 12.5 189 192-425 44-247 (735)
112 KOG0772 Uncharacterized conser 99.8 2.9E-18 6.3E-23 166.2 13.1 200 217-463 263-487 (641)
113 KOG0650 WD40 repeat nucleolar 99.8 3E-17 6.4E-22 161.8 19.3 250 207-458 385-674 (733)
114 KOG0299 U3 snoRNP-associated p 99.8 2.7E-17 5.9E-22 157.7 18.3 246 215-462 135-409 (479)
115 KOG4378 Nuclear protein COP1 [ 99.8 2.6E-17 5.6E-22 158.9 18.1 204 191-452 97-305 (673)
116 KOG1036 Mitotic spindle checkp 99.8 4.1E-17 8.9E-22 149.5 18.5 177 221-451 12-188 (323)
117 KOG0270 WD40 repeat-containing 99.8 1.6E-17 3.4E-22 158.7 16.3 163 218-425 239-408 (463)
118 KOG0641 WD40 repeat protein [G 99.8 1.1E-16 2.4E-21 140.6 19.8 201 220-457 30-296 (350)
119 KOG0300 WD40 repeat-containing 99.8 1.5E-17 3.2E-22 152.6 14.7 199 212-462 138-385 (481)
120 KOG0267 Microtubule severing p 99.8 1.2E-18 2.5E-23 174.9 8.0 195 215-462 21-225 (825)
121 KOG0270 WD40 repeat-containing 99.8 1.9E-17 4E-22 158.2 15.7 200 234-463 192-404 (463)
122 KOG0308 Conserved WD40 repeat- 99.8 2.3E-17 5E-22 164.0 16.9 192 191-423 91-287 (735)
123 KOG0647 mRNA export protein (c 99.8 4.7E-17 1E-21 148.7 17.5 189 212-454 62-307 (347)
124 KOG0639 Transducin-like enhanc 99.8 1.5E-17 3.3E-22 160.7 14.5 232 220-465 417-665 (705)
125 KOG1273 WD40 repeat protein [G 99.7 5.9E-17 1.3E-21 148.7 16.4 152 225-421 26-226 (405)
126 KOG0646 WD40 repeat protein [G 99.7 1.4E-16 3E-21 153.2 18.9 196 221-461 80-305 (476)
127 KOG1274 WD40 repeat protein [G 99.7 3.5E-16 7.6E-21 161.2 22.4 230 220-462 11-261 (933)
128 KOG4328 WD40 protein [Function 99.7 8.3E-17 1.8E-21 154.3 14.8 174 207-421 171-399 (498)
129 KOG2445 Nuclear pore complex c 99.7 9.7E-16 2.1E-20 140.5 19.9 239 219-464 10-319 (361)
130 KOG1274 WD40 repeat protein [G 99.7 8.1E-16 1.8E-20 158.5 19.7 188 217-461 91-291 (933)
131 KOG1446 Histone H3 (Lys4) meth 99.7 3E-15 6.6E-20 137.9 20.9 211 204-423 82-305 (311)
132 KOG4283 Transcription-coupled 99.7 4.4E-16 9.5E-21 141.8 14.9 164 219-428 98-283 (397)
133 KOG4227 WD40 repeat protein [G 99.7 3.1E-16 6.7E-21 147.5 14.1 204 211-454 45-258 (609)
134 KOG1036 Mitotic spindle checkp 99.7 4E-15 8.8E-20 136.6 20.4 213 200-463 33-261 (323)
135 KOG2055 WD40 repeat protein [G 99.7 2.8E-15 6.1E-20 144.0 20.2 231 220-463 211-467 (514)
136 KOG1539 WD repeat protein [Gen 99.7 1.1E-15 2.3E-20 156.1 17.7 185 222-457 448-634 (910)
137 KOG0642 Cell-cycle nuclear pro 99.7 7.4E-16 1.6E-20 151.4 14.7 201 191-427 312-567 (577)
138 KOG1408 WD40 repeat protein [F 99.7 1.8E-15 3.8E-20 151.9 16.5 201 220-421 457-713 (1080)
139 KOG0771 Prolactin regulatory e 99.7 1.1E-15 2.3E-20 145.8 14.1 177 226-455 148-339 (398)
140 KOG2048 WD40 repeat protein [G 99.7 2.2E-14 4.8E-19 143.7 22.8 197 221-462 24-232 (691)
141 KOG1007 WD repeat protein TSSC 99.6 1.4E-14 3.1E-19 131.8 17.6 210 210-421 110-361 (370)
142 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 4.5E-14 9.8E-19 136.5 22.7 190 216-454 25-220 (300)
143 KOG4328 WD40 protein [Function 99.6 6E-15 1.3E-19 141.7 15.8 226 190-426 205-455 (498)
144 KOG0303 Actin-binding protein 99.6 2.1E-15 4.5E-20 142.4 12.4 128 303-430 75-212 (472)
145 KOG1539 WD repeat protein [Gen 99.6 2.9E-15 6.3E-20 153.0 14.0 155 219-420 490-647 (910)
146 KOG0639 Transducin-like enhanc 99.6 2.9E-15 6.3E-20 145.1 13.3 246 192-454 437-688 (705)
147 KOG1063 RNA polymerase II elon 99.6 8.9E-15 1.9E-19 146.7 17.1 194 213-452 516-735 (764)
148 KOG1034 Transcriptional repres 99.6 8.1E-15 1.8E-19 135.5 14.9 186 220-454 87-367 (385)
149 KOG2055 WD40 repeat protein [G 99.6 2.9E-14 6.3E-19 137.1 17.5 238 216-462 251-511 (514)
150 KOG1310 WD40 repeat protein [G 99.6 2.5E-15 5.5E-20 146.9 10.3 170 207-421 35-231 (758)
151 KOG1523 Actin-related protein 99.6 1.5E-14 3.3E-19 133.4 14.3 190 221-455 9-221 (361)
152 KOG0321 WD40 repeat-containing 99.6 1.4E-14 3E-19 144.1 15.1 163 227-428 54-255 (720)
153 KOG0642 Cell-cycle nuclear pro 99.6 7.9E-15 1.7E-19 144.2 13.0 194 216-454 288-545 (577)
154 KOG1188 WD40 repeat protein [G 99.6 1.8E-14 3.9E-19 133.9 14.7 172 210-424 58-245 (376)
155 KOG1009 Chromatin assembly com 99.6 1E-14 2.2E-19 138.3 13.0 167 214-410 57-249 (434)
156 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 3.5E-13 7.5E-18 130.3 24.0 194 225-426 75-284 (300)
157 KOG0644 Uncharacterized conser 99.6 1.2E-15 2.6E-20 155.5 6.4 119 212-380 180-300 (1113)
158 KOG0307 Vesicle coat complex C 99.6 6.1E-15 1.3E-19 155.6 11.8 188 215-452 109-308 (1049)
159 KOG2106 Uncharacterized conser 99.6 1E-13 2.2E-18 134.7 19.0 174 223-454 247-461 (626)
160 KOG1063 RNA polymerase II elon 99.6 7.9E-14 1.7E-18 140.0 16.7 233 213-463 182-437 (764)
161 PF08662 eIF2A: Eukaryotic tra 99.6 4.2E-13 9.1E-18 121.8 20.1 114 308-425 58-183 (194)
162 KOG0649 WD40 repeat protein [G 99.6 3.3E-13 7E-18 120.3 18.2 196 218-422 58-275 (325)
163 KOG0290 Conserved WD40 repeat- 99.6 7E-14 1.5E-18 127.4 14.0 188 220-453 148-348 (364)
164 KOG0321 WD40 repeat-containing 99.6 6.6E-14 1.4E-18 139.4 14.9 165 218-427 96-307 (720)
165 KOG1034 Transcriptional repres 99.5 1.4E-13 3E-18 127.4 15.6 167 215-424 31-214 (385)
166 KOG2096 WD40 repeat protein [G 99.5 2.7E-13 5.9E-18 125.0 16.7 190 219-419 184-400 (420)
167 KOG4378 Nuclear protein COP1 [ 99.5 2.1E-14 4.6E-19 139.0 9.8 175 225-455 85-265 (673)
168 KOG2048 WD40 repeat protein [G 99.5 6E-13 1.3E-17 133.6 19.7 195 208-450 96-301 (691)
169 KOG1273 WD40 repeat protein [G 99.5 1.6E-12 3.5E-17 119.8 20.5 210 208-426 51-285 (405)
170 KOG1009 Chromatin assembly com 99.5 1.7E-13 3.8E-18 130.0 14.4 167 222-425 13-199 (434)
171 KOG1408 WD40 repeat protein [F 99.5 8.2E-13 1.8E-17 133.0 19.6 155 301-463 493-713 (1080)
172 KOG1538 Uncharacterized conser 99.5 5.6E-13 1.2E-17 133.2 17.4 215 208-424 39-296 (1081)
173 KOG2445 Nuclear pore complex c 99.5 9.1E-13 2E-17 121.1 17.3 239 182-424 22-321 (361)
174 KOG1524 WD40 repeat-containing 99.5 1.3E-13 2.8E-18 134.8 12.4 188 216-425 98-290 (737)
175 KOG1445 Tumor-specific antigen 99.5 9.9E-14 2.2E-18 137.8 11.5 165 221-424 626-801 (1012)
176 KOG0307 Vesicle coat complex C 99.5 6.4E-14 1.4E-18 148.0 10.0 186 222-452 64-265 (1049)
177 COG2319 FOG: WD40 repeat [Gene 99.5 6.2E-12 1.3E-16 125.2 23.6 170 212-428 145-321 (466)
178 KOG1007 WD repeat protein TSSC 99.5 6.6E-13 1.4E-17 121.0 14.2 208 214-421 55-289 (370)
179 KOG1524 WD40 repeat-containing 99.5 5.8E-13 1.3E-17 130.3 14.6 220 220-451 12-238 (737)
180 COG2319 FOG: WD40 repeat [Gene 99.5 3.3E-11 7.1E-16 120.0 27.8 221 217-450 60-294 (466)
181 KOG0649 WD40 repeat protein [G 99.5 8.5E-13 1.8E-17 117.6 13.9 202 223-463 11-235 (325)
182 KOG1188 WD40 repeat protein [G 99.5 8.2E-13 1.8E-17 123.0 13.7 143 235-423 41-198 (376)
183 KOG2919 Guanine nucleotide-bin 99.5 1E-12 2.3E-17 121.4 14.1 159 225-422 161-328 (406)
184 KOG1538 Uncharacterized conser 99.4 1.2E-12 2.7E-17 130.8 13.8 175 224-453 14-189 (1081)
185 KOG2394 WD40 protein DMR-N9 [G 99.4 2.4E-12 5.3E-17 126.1 15.3 188 222-427 219-458 (636)
186 KOG1587 Cytoplasmic dynein int 99.4 4E-12 8.6E-17 130.7 17.5 229 193-423 263-518 (555)
187 KOG0322 G-protein beta subunit 99.4 2.9E-12 6.3E-17 115.6 11.6 165 220-420 148-322 (323)
188 KOG2110 Uncharacterized conser 99.4 2.7E-11 5.9E-16 114.1 18.3 157 222-424 87-251 (391)
189 KOG2110 Uncharacterized conser 99.4 7.9E-11 1.7E-15 111.0 20.7 217 221-455 4-233 (391)
190 KOG2919 Guanine nucleotide-bin 99.4 4.8E-11 1E-15 110.6 18.0 199 225-427 52-287 (406)
191 PRK01742 tolB translocation pr 99.4 3.2E-11 7E-16 123.4 18.9 196 215-421 196-401 (429)
192 PRK05137 tolB translocation pr 99.4 6.7E-11 1.5E-15 121.4 20.9 183 216-454 195-390 (435)
193 KOG2321 WD40 repeat protein [G 99.4 5.6E-11 1.2E-15 117.6 19.0 234 201-454 31-285 (703)
194 KOG0290 Conserved WD40 repeat- 99.4 2.2E-11 4.8E-16 111.3 14.9 198 220-463 94-318 (364)
195 KOG1445 Tumor-specific antigen 99.3 6.2E-12 1.3E-16 125.2 11.3 133 301-434 71-213 (1012)
196 KOG1517 Guanine nucleotide bin 99.3 1.1E-10 2.5E-15 122.4 19.6 238 222-462 1109-1379(1387)
197 KOG0322 G-protein beta subunit 99.3 5E-11 1.1E-15 107.6 14.8 239 214-461 6-321 (323)
198 PRK04922 tolB translocation pr 99.3 1.1E-10 2.5E-15 119.6 19.6 164 216-426 197-373 (433)
199 KOG1963 WD40 repeat protein [G 99.3 1.5E-10 3.2E-15 119.9 20.0 234 210-454 45-306 (792)
200 KOG1523 Actin-related protein 99.3 3.9E-11 8.4E-16 111.1 14.0 169 213-424 46-239 (361)
201 PF08662 eIF2A: Eukaryotic tra 99.3 1.5E-10 3.3E-15 105.0 16.7 115 221-385 58-184 (194)
202 KOG0644 Uncharacterized conser 99.3 4.6E-12 9.9E-17 129.7 6.9 226 190-425 207-472 (1113)
203 KOG2394 WD40 protein DMR-N9 [G 99.3 1.6E-10 3.4E-15 113.7 17.1 134 309-450 219-384 (636)
204 PRK03629 tolB translocation pr 99.3 3.6E-10 7.8E-15 115.6 20.8 164 216-426 192-368 (429)
205 KOG1587 Cytoplasmic dynein int 99.3 3.4E-10 7.3E-15 116.6 20.1 232 221-463 241-516 (555)
206 KOG1272 WD40-repeat-containing 99.3 2.5E-11 5.4E-16 117.3 10.9 189 226-424 133-326 (545)
207 KOG1240 Protein kinase contain 99.3 3.4E-10 7.4E-15 120.7 19.8 216 212-428 1038-1280(1431)
208 KOG4227 WD40 repeat protein [G 99.3 1.3E-10 2.9E-15 110.0 14.9 232 188-463 71-322 (609)
209 KOG1517 Guanine nucleotide bin 99.3 1.5E-09 3.2E-14 114.3 23.7 203 218-423 1060-1289(1387)
210 KOG0650 WD40 repeat nucleolar 99.3 5E-11 1.1E-15 118.3 12.3 186 219-451 518-716 (733)
211 PRK11028 6-phosphogluconolacto 99.2 1.7E-09 3.6E-14 107.0 23.2 189 221-454 33-241 (330)
212 TIGR02800 propeller_TolB tol-p 99.2 5E-10 1.1E-14 114.3 19.9 163 216-425 183-358 (417)
213 PRK02889 tolB translocation pr 99.2 6.3E-10 1.4E-14 113.8 19.9 183 216-454 189-384 (427)
214 KOG0771 Prolactin regulatory e 99.2 1.3E-10 2.9E-15 111.3 13.4 190 181-422 152-355 (398)
215 KOG1963 WD40 repeat protein [G 99.2 4.1E-10 8.8E-15 116.7 17.9 193 220-454 203-412 (792)
216 KOG2139 WD40 repeat protein [G 99.2 3.6E-10 7.8E-15 106.3 15.7 184 221-458 97-298 (445)
217 KOG1334 WD40 repeat protein [G 99.2 2.2E-10 4.7E-15 111.5 14.5 206 212-421 132-366 (559)
218 KOG1310 WD40 repeat protein [G 99.2 3.6E-11 7.8E-16 118.2 9.1 124 301-424 42-181 (758)
219 PRK11028 6-phosphogluconolacto 99.2 3.2E-09 7E-14 104.9 21.4 184 224-454 81-287 (330)
220 KOG2111 Uncharacterized conser 99.2 1.8E-08 3.9E-13 93.6 24.0 175 192-381 72-257 (346)
221 KOG1272 WD40-repeat-containing 99.2 5.3E-11 1.2E-15 115.0 7.5 177 224-451 211-390 (545)
222 KOG2111 Uncharacterized conser 99.2 6.2E-09 1.3E-13 96.7 20.6 97 327-424 156-259 (346)
223 KOG3881 Uncharacterized conser 99.2 3.2E-09 7E-14 100.9 18.8 201 217-426 100-325 (412)
224 KOG0974 WD-repeat protein WDR6 99.2 2.6E-10 5.7E-15 120.0 12.5 195 223-425 88-292 (967)
225 KOG2139 WD40 repeat protein [G 99.1 4.4E-09 9.5E-14 99.1 18.3 201 222-457 140-362 (445)
226 KOG2321 WD40 repeat protein [G 99.1 6.8E-10 1.5E-14 110.0 13.5 169 220-422 173-344 (703)
227 KOG1409 Uncharacterized conser 99.1 3.6E-09 7.8E-14 99.1 15.4 167 209-381 101-271 (404)
228 PRK00178 tolB translocation pr 99.1 1.3E-08 2.8E-13 104.4 20.8 164 216-426 192-368 (430)
229 PRK03629 tolB translocation pr 99.1 1E-08 2.2E-13 105.0 19.9 156 221-424 241-409 (429)
230 PRK01742 tolB translocation pr 99.1 3.9E-09 8.5E-14 108.1 16.2 119 304-423 198-324 (429)
231 KOG4547 WD40 repeat-containing 99.0 1.7E-08 3.8E-13 100.8 19.4 189 231-422 2-221 (541)
232 PRK04792 tolB translocation pr 99.0 1.8E-08 3.9E-13 103.6 19.7 163 216-425 211-386 (448)
233 KOG0974 WD-repeat protein WDR6 99.0 1.8E-09 3.9E-14 113.8 11.0 118 217-381 170-289 (967)
234 KOG1354 Serine/threonine prote 99.0 7.5E-09 1.6E-13 97.0 13.7 211 222-463 25-301 (433)
235 KOG4497 Uncharacterized conser 99.0 2.1E-09 4.5E-14 100.1 8.8 137 227-411 13-153 (447)
236 PRK04922 tolB translocation pr 99.0 3.6E-08 7.9E-13 101.1 19.1 158 218-423 243-413 (433)
237 PRK05137 tolB translocation pr 98.9 8.2E-08 1.8E-12 98.6 20.8 143 303-454 195-347 (435)
238 KOG1064 RAVE (regulator of V-A 98.9 3.4E-09 7.4E-14 116.8 10.4 190 219-425 2205-2402(2439)
239 PRK02889 tolB translocation pr 98.9 8.3E-08 1.8E-12 98.3 19.2 156 220-421 237-403 (427)
240 KOG0280 Uncharacterized conser 98.9 1.9E-08 4.1E-13 92.6 12.7 158 225-426 124-289 (339)
241 PRK01029 tolB translocation pr 98.8 3.5E-07 7.6E-12 93.5 19.2 114 311-425 282-407 (428)
242 KOG1354 Serine/threonine prote 98.8 9.9E-08 2.1E-12 89.6 12.9 204 222-436 84-316 (433)
243 KOG3914 WD repeat protein WDR4 98.8 8.6E-08 1.9E-12 91.8 12.7 160 224-426 64-228 (390)
244 TIGR02800 propeller_TolB tol-p 98.8 4.9E-07 1.1E-11 92.2 19.4 157 218-422 229-398 (417)
245 KOG2315 Predicted translation 98.8 8.9E-07 1.9E-11 88.2 20.2 115 308-426 269-395 (566)
246 KOG1240 Protein kinase contain 98.8 3.2E-07 7E-12 98.6 17.9 235 190-425 1066-1338(1431)
247 PF00400 WD40: WD domain, G-be 98.8 1.1E-08 2.3E-13 67.0 4.5 37 214-250 3-39 (39)
248 KOG3881 Uncharacterized conser 98.8 9.9E-08 2.1E-12 91.0 12.3 133 225-402 205-342 (412)
249 KOG1409 Uncharacterized conser 98.8 1.1E-07 2.3E-12 89.4 12.2 209 214-425 16-274 (404)
250 KOG4190 Uncharacterized conser 98.7 2.8E-08 6.1E-13 98.2 6.8 170 216-425 729-910 (1034)
251 PLN02919 haloacid dehalogenase 98.7 2.1E-06 4.5E-11 96.7 21.5 175 226-432 686-900 (1057)
252 PRK01029 tolB translocation pr 98.6 2.1E-06 4.4E-11 87.9 19.3 135 311-454 232-384 (428)
253 KOG2041 WD40 repeat protein [G 98.6 1.9E-07 4.1E-12 95.0 11.0 173 220-423 12-188 (1189)
254 KOG4714 Nucleoporin [Nuclear s 98.6 1.9E-07 4.2E-12 84.6 9.8 195 219-419 86-316 (319)
255 COG5170 CDC55 Serine/threonine 98.6 2.5E-07 5.4E-12 85.9 10.5 200 221-462 25-308 (460)
256 PF02239 Cytochrom_D1: Cytochr 98.6 6.9E-06 1.5E-10 82.1 21.8 145 302-454 29-185 (369)
257 KOG0280 Uncharacterized conser 98.6 1.8E-06 3.8E-11 79.8 15.6 117 312-428 124-248 (339)
258 KOG4497 Uncharacterized conser 98.6 1.2E-06 2.7E-11 81.9 14.6 194 223-417 211-428 (447)
259 PRK00178 tolB translocation pr 98.6 2.1E-06 4.6E-11 88.1 17.9 125 300-425 189-323 (430)
260 PRK04792 tolB translocation pr 98.6 3.7E-06 8E-11 86.6 18.9 118 307-425 215-342 (448)
261 KOG3914 WD repeat protein WDR4 98.5 1E-06 2.2E-11 84.6 12.6 159 216-386 67-229 (390)
262 PF02239 Cytochrom_D1: Cytochr 98.5 3.5E-06 7.5E-11 84.2 17.2 129 323-453 9-140 (369)
263 PF10282 Lactonase: Lactonase, 98.5 4.8E-05 1E-09 75.7 24.5 188 225-454 39-258 (345)
264 KOG0309 Conserved WD40 repeat- 98.5 1.9E-07 4E-12 95.5 6.5 121 216-380 108-232 (1081)
265 COG5170 CDC55 Serine/threonine 98.5 5.6E-07 1.2E-11 83.6 9.0 203 223-435 86-323 (460)
266 KOG4532 WD40-like repeat conta 98.5 7.8E-06 1.7E-10 74.7 15.6 130 322-455 130-265 (344)
267 TIGR02658 TTQ_MADH_Hv methylam 98.5 3.8E-05 8.3E-10 75.5 21.8 199 225-426 107-335 (352)
268 PRK04043 tolB translocation pr 98.4 3E-05 6.6E-10 78.9 21.4 174 223-454 188-381 (419)
269 KOG1334 WD40 repeat protein [G 98.4 1.1E-06 2.3E-11 86.2 9.7 210 216-425 226-470 (559)
270 PF00400 WD40: WD domain, G-be 98.4 1.1E-06 2.3E-11 57.3 6.1 38 340-378 1-39 (39)
271 PF10282 Lactonase: Lactonase, 98.4 0.00013 2.9E-09 72.5 24.0 193 224-454 88-305 (345)
272 COG2706 3-carboxymuconate cycl 98.4 0.00013 2.8E-09 69.7 22.2 194 218-455 35-258 (346)
273 KOG4547 WD40 repeat-containing 98.4 5.4E-06 1.2E-10 83.2 13.3 115 219-381 99-221 (541)
274 KOG0309 Conserved WD40 repeat- 98.4 9.2E-07 2E-11 90.5 7.8 202 221-426 23-237 (1081)
275 KOG2695 WD40 repeat protein [G 98.4 8.9E-07 1.9E-11 83.4 7.1 139 308-449 251-401 (425)
276 KOG1275 PAB-dependent poly(A) 98.4 3.8E-06 8.3E-11 88.1 12.3 148 224-419 179-340 (1118)
277 KOG2041 WD40 repeat protein [G 98.4 4.2E-06 9.1E-11 85.5 12.2 205 208-464 57-297 (1189)
278 KOG4190 Uncharacterized conser 98.3 6.1E-07 1.3E-11 89.0 5.9 193 190-426 752-953 (1034)
279 PF15492 Nbas_N: Neuroblastoma 98.3 5E-05 1.1E-09 70.4 18.0 198 225-426 46-264 (282)
280 KOG1064 RAVE (regulator of V-A 98.3 8.6E-07 1.9E-11 98.5 6.4 151 223-386 2252-2404(2439)
281 COG4946 Uncharacterized protei 98.2 0.0003 6.6E-09 69.2 21.6 194 230-425 274-481 (668)
282 COG4946 Uncharacterized protei 98.2 8.1E-05 1.8E-09 73.2 17.5 144 220-410 357-507 (668)
283 PF11768 DUF3312: Protein of u 98.2 1.1E-05 2.5E-10 81.5 11.6 137 311-450 207-367 (545)
284 COG5354 Uncharacterized protei 98.2 8.3E-05 1.8E-09 73.7 17.1 200 223-425 174-399 (561)
285 PLN02919 haloacid dehalogenase 98.2 0.00024 5.1E-09 80.4 23.3 139 312-453 685-871 (1057)
286 PF04762 IKI3: IKI3 family; I 98.2 0.00014 3E-09 80.9 20.5 199 221-428 119-340 (928)
287 KOG4532 WD40-like repeat conta 98.2 0.00017 3.6E-09 66.2 17.2 140 312-452 161-314 (344)
288 KOG2315 Predicted translation 98.2 0.00019 4.1E-09 72.0 18.7 132 311-454 219-368 (566)
289 KOG4714 Nucleoporin [Nuclear s 98.2 1.1E-05 2.3E-10 73.6 9.1 92 332-423 161-256 (319)
290 KOG2695 WD40 repeat protein [G 98.2 5.3E-06 1.1E-10 78.3 7.3 138 221-400 251-401 (425)
291 KOG2066 Vacuolar assembly/sort 98.2 0.00014 3.1E-09 75.8 18.3 150 219-421 55-233 (846)
292 KOG1912 WD40 repeat protein [G 98.2 8.2E-05 1.8E-09 77.1 16.3 196 209-456 42-288 (1062)
293 KOG0882 Cyclophilin-related pe 98.1 4.1E-05 8.9E-10 74.7 12.6 224 193-426 28-310 (558)
294 COG5354 Uncharacterized protei 98.1 0.00033 7.2E-09 69.6 18.9 97 331-430 256-357 (561)
295 KOG1832 HIV-1 Vpr-binding prot 98.1 2.2E-06 4.7E-11 89.4 3.6 199 207-425 1086-1295(1516)
296 KOG2066 Vacuolar assembly/sort 98.1 3.4E-05 7.5E-10 80.2 11.8 148 221-426 38-192 (846)
297 PF08450 SGL: SMP-30/Gluconola 98.0 0.0016 3.5E-08 61.3 22.1 148 227-425 4-168 (246)
298 PRK04043 tolB translocation pr 98.0 0.00074 1.6E-08 68.8 19.3 106 314-423 281-402 (419)
299 KOG1645 RING-finger-containing 97.9 0.00013 2.8E-09 70.4 12.4 54 205-258 176-230 (463)
300 COG2706 3-carboxymuconate cycl 97.9 0.0037 8.1E-08 59.9 22.1 190 226-454 92-304 (346)
301 KOG2314 Translation initiation 97.9 8.4E-05 1.8E-09 74.3 11.0 138 313-463 214-366 (698)
302 KOG1912 WD40 repeat protein [G 97.9 0.00024 5.2E-09 73.8 13.8 150 225-421 18-186 (1062)
303 KOG0882 Cyclophilin-related pe 97.8 8.5E-05 1.8E-09 72.6 9.4 190 220-454 7-215 (558)
304 KOG2114 Vacuolar assembly/sort 97.8 0.0012 2.6E-08 69.6 17.7 162 224-434 27-214 (933)
305 PF13360 PQQ_2: PQQ-like domai 97.8 0.0077 1.7E-07 56.0 22.0 182 233-427 35-236 (238)
306 PF08450 SGL: SMP-30/Gluconola 97.7 0.013 2.8E-07 55.1 22.5 130 309-448 85-232 (246)
307 TIGR02658 TTQ_MADH_Hv methylam 97.7 0.0013 2.9E-08 64.7 15.8 122 330-454 27-169 (352)
308 smart00320 WD40 WD40 repeats. 97.7 6.4E-05 1.4E-09 47.1 3.9 36 215-250 5-40 (40)
309 PF04762 IKI3: IKI3 family; I 97.6 0.005 1.1E-07 68.7 20.6 200 221-423 208-458 (928)
310 PF11768 DUF3312: Protein of u 97.6 0.0012 2.6E-08 67.2 13.7 95 307-403 257-369 (545)
311 PF07433 DUF1513: Protein of u 97.5 0.01 2.2E-07 56.8 18.6 101 326-427 134-253 (305)
312 TIGR03300 assembly_YfgL outer 97.5 0.017 3.7E-07 58.1 21.6 102 320-427 241-344 (377)
313 KOG1275 PAB-dependent poly(A) 97.5 0.0013 2.9E-08 69.6 13.5 133 312-454 180-326 (1118)
314 KOG2314 Translation initiation 97.5 0.0077 1.7E-07 60.8 17.9 222 220-455 248-507 (698)
315 PF15492 Nbas_N: Neuroblastoma 97.5 0.019 4.2E-07 53.6 19.3 150 313-463 47-259 (282)
316 TIGR03300 assembly_YfgL outer 97.5 0.025 5.5E-07 56.8 22.2 106 320-428 190-304 (377)
317 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.0089 1.9E-07 48.2 14.4 101 225-375 2-109 (111)
318 KOG1008 Uncharacterized conser 97.5 6.1E-05 1.3E-09 76.6 2.5 162 219-421 99-275 (783)
319 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.011 2.5E-07 47.5 14.9 99 312-416 2-109 (111)
320 PF13360 PQQ_2: PQQ-like domai 97.4 0.0062 1.4E-07 56.6 15.9 108 319-428 35-147 (238)
321 PF04053 Coatomer_WDAD: Coatom 97.3 0.0031 6.8E-08 64.4 13.3 145 220-422 30-174 (443)
322 KOG1645 RING-finger-containing 97.3 0.0005 1.1E-08 66.5 6.9 82 301-382 185-268 (463)
323 KOG4640 Anaphase-promoting com 97.3 0.00089 1.9E-08 68.4 9.0 79 348-427 19-98 (665)
324 KOG1920 IkappaB kinase complex 97.2 0.035 7.5E-07 61.2 19.9 120 313-434 199-336 (1265)
325 KOG1008 Uncharacterized conser 97.2 7.1E-05 1.5E-09 76.2 -0.4 184 222-452 56-255 (783)
326 KOG4640 Anaphase-promoting com 97.2 0.0018 3.8E-08 66.3 9.3 91 309-401 20-115 (665)
327 KOG3617 WD40 and TPR repeat-co 97.1 0.0056 1.2E-07 64.6 12.6 182 225-452 62-367 (1416)
328 PF08596 Lgl_C: Lethal giant l 97.1 0.057 1.2E-06 54.5 19.5 199 224-430 3-252 (395)
329 smart00320 WD40 WD40 repeats. 97.1 0.0017 3.8E-08 40.1 5.8 37 341-378 3-40 (40)
330 PF06977 SdiA-regulated: SdiA- 97.1 0.08 1.7E-06 49.8 19.0 199 216-418 15-247 (248)
331 PF08596 Lgl_C: Lethal giant l 97.1 0.043 9.3E-07 55.3 18.2 196 216-453 80-319 (395)
332 KOG2114 Vacuolar assembly/sort 97.1 0.011 2.5E-07 62.5 14.2 179 212-426 54-248 (933)
333 KOG3617 WD40 and TPR repeat-co 97.1 0.0009 2E-08 70.3 5.9 106 314-421 20-131 (1416)
334 PRK11138 outer membrane biogen 97.0 0.18 3.9E-06 51.0 22.3 103 320-428 256-360 (394)
335 KOG3621 WD40 repeat-containing 96.9 0.0041 8.9E-08 64.4 9.0 103 319-422 44-155 (726)
336 PF08553 VID27: VID27 cytoplas 96.7 0.077 1.7E-06 57.5 17.3 126 292-420 504-646 (794)
337 PRK02888 nitrous-oxide reducta 96.7 0.071 1.5E-06 55.9 16.3 120 308-428 319-481 (635)
338 PF07433 DUF1513: Protein of u 96.6 0.26 5.6E-06 47.4 18.2 182 226-454 8-230 (305)
339 PF03178 CPSF_A: CPSF A subuni 96.6 0.15 3.2E-06 50.1 17.4 110 308-422 87-203 (321)
340 PRK11138 outer membrane biogen 96.6 0.27 5.8E-06 49.8 19.5 185 234-427 120-318 (394)
341 KOG4649 PQQ (pyrrolo-quinoline 96.4 0.13 2.9E-06 47.5 14.1 106 321-428 24-130 (354)
342 PF08553 VID27: VID27 cytoplas 96.4 0.04 8.6E-07 59.7 12.4 123 325-455 499-633 (794)
343 COG0823 TolB Periplasmic compo 96.3 0.21 4.5E-06 50.9 16.7 109 314-424 242-361 (425)
344 PRK02888 nitrous-oxide reducta 96.3 0.19 4.2E-06 52.7 16.3 94 328-422 294-405 (635)
345 KOG1832 HIV-1 Vpr-binding prot 96.1 0.0066 1.4E-07 64.4 4.8 123 300-426 1092-1219(1516)
346 PF00780 CNH: CNH domain; Int 96.1 0.35 7.6E-06 46.1 16.5 111 311-425 37-169 (275)
347 COG3391 Uncharacterized conser 96.1 1.1 2.4E-05 45.2 20.6 115 311-426 117-244 (381)
348 PF12894 Apc4_WD40: Anaphase-p 96.1 0.022 4.8E-07 38.5 5.6 35 389-423 9-43 (47)
349 PF04841 Vps16_N: Vps16, N-ter 96.0 1.7 3.6E-05 44.3 21.6 32 392-423 217-248 (410)
350 KOG3621 WD40 repeat-containing 95.9 0.021 4.7E-07 59.3 7.3 104 348-453 32-137 (726)
351 KOG2079 Vacuolar assembly/sort 95.9 0.026 5.7E-07 61.3 7.9 98 321-421 100-203 (1206)
352 PF12894 Apc4_WD40: Anaphase-p 95.8 0.031 6.7E-07 37.8 5.5 31 222-252 11-41 (47)
353 KOG2395 Protein involved in va 95.7 0.71 1.5E-05 47.0 16.5 119 299-421 366-500 (644)
354 PF04841 Vps16_N: Vps16, N-ter 95.6 3 6.5E-05 42.5 22.1 55 348-403 215-271 (410)
355 KOG3630 Nuclear pore complex, 95.6 0.19 4.1E-06 55.4 13.2 136 311-450 102-253 (1405)
356 COG0823 TolB Periplasmic compo 95.4 0.25 5.4E-06 50.4 13.0 118 308-426 191-319 (425)
357 PF06977 SdiA-regulated: SdiA- 95.4 0.96 2.1E-05 42.5 15.8 147 304-452 16-182 (248)
358 COG3391 Uncharacterized conser 95.2 2.4 5.1E-05 42.8 19.3 156 224-426 117-288 (381)
359 KOG2395 Protein involved in va 95.1 0.28 6E-06 49.9 11.7 134 322-464 348-501 (644)
360 KOG4649 PQQ (pyrrolo-quinoline 95.1 1.8 4E-05 40.3 15.9 99 319-418 62-162 (354)
361 KOG2444 WD40 repeat protein [G 95.1 0.064 1.4E-06 48.7 6.4 102 321-422 71-178 (238)
362 PF03178 CPSF_A: CPSF A subuni 95.1 0.78 1.7E-05 45.0 14.9 115 330-452 62-184 (321)
363 TIGR02604 Piru_Ver_Nterm putat 95.0 0.8 1.7E-05 45.9 15.2 98 311-410 73-202 (367)
364 PRK13616 lipoprotein LpqB; Pro 94.9 0.89 1.9E-05 48.5 15.8 105 312-421 399-525 (591)
365 KOG1920 IkappaB kinase complex 94.9 0.72 1.6E-05 51.3 15.0 142 310-453 69-266 (1265)
366 PF08728 CRT10: CRT10; InterP 94.9 1.7 3.7E-05 46.7 17.4 109 311-420 102-245 (717)
367 KOG2444 WD40 repeat protein [G 94.7 0.14 3E-06 46.6 7.5 55 321-383 115-169 (238)
368 cd00216 PQQ_DH Dehydrogenases 94.5 1.6 3.4E-05 45.6 16.2 102 322-428 303-431 (488)
369 COG3490 Uncharacterized protei 94.4 0.65 1.4E-05 43.8 11.4 69 348-419 278-346 (366)
370 PF00930 DPPIV_N: Dipeptidyl p 94.4 0.16 3.5E-06 50.6 8.3 90 329-420 22-130 (353)
371 PF14870 PSII_BNR: Photosynthe 94.2 5.8 0.00013 38.5 18.9 148 222-418 144-301 (302)
372 PF00780 CNH: CNH domain; Int 93.9 2.5 5.4E-05 40.2 15.2 120 320-449 7-147 (275)
373 PF04053 Coatomer_WDAD: Coatom 93.9 1.3 2.7E-05 45.5 13.6 110 311-426 146-267 (443)
374 PF15390 DUF4613: Domain of un 93.8 1.9 4.2E-05 44.7 14.4 114 307-421 54-186 (671)
375 PF02897 Peptidase_S9_N: Proly 93.6 4.6 0.0001 41.0 17.5 111 311-423 125-262 (414)
376 PF06433 Me-amine-dh_H: Methyl 93.4 8.5 0.00019 37.7 17.9 107 321-427 196-326 (342)
377 KOG2079 Vacuolar assembly/sort 93.4 0.33 7.1E-06 53.3 8.5 69 308-379 129-202 (1206)
378 COG3204 Uncharacterized protei 93.3 7.7 0.00017 37.0 19.1 199 215-463 78-303 (316)
379 PF10313 DUF2415: Uncharacteri 93.3 0.27 5.9E-06 32.3 4.9 31 223-253 1-34 (43)
380 PF14781 BBS2_N: Ciliary BBSom 93.2 3.9 8.5E-05 34.2 12.8 103 322-425 12-129 (136)
381 cd00216 PQQ_DH Dehydrogenases 93.0 4.2 9.1E-05 42.5 16.2 105 321-428 111-271 (488)
382 PF12234 Rav1p_C: RAVE protein 92.8 2.9 6.2E-05 44.5 14.5 105 314-420 34-155 (631)
383 KOG4499 Ca2+-binding protein R 92.8 5.6 0.00012 36.7 14.2 97 313-410 161-273 (310)
384 COG3386 Gluconolactonase [Carb 92.8 10 0.00022 36.9 20.1 112 311-423 112-245 (307)
385 PF05096 Glu_cyclase_2: Glutam 92.7 9.1 0.0002 36.2 16.7 134 310-449 45-183 (264)
386 COG3204 Uncharacterized protei 92.6 3.4 7.5E-05 39.3 13.1 117 307-424 83-213 (316)
387 PRK13616 lipoprotein LpqB; Pro 92.5 0.75 1.6E-05 49.0 9.9 105 307-417 347-472 (591)
388 PF00930 DPPIV_N: Dipeptidyl p 92.5 0.72 1.6E-05 45.9 9.4 100 358-461 1-121 (353)
389 PF10168 Nup88: Nuclear pore c 92.4 2.5 5.4E-05 46.1 13.8 80 351-432 86-190 (717)
390 PF07569 Hira: TUP1-like enhan 92.0 1.5 3.2E-05 40.5 10.1 73 349-425 12-99 (219)
391 PF06433 Me-amine-dh_H: Methyl 91.6 15 0.00032 36.1 19.2 165 227-432 40-225 (342)
392 PF10647 Gmad1: Lipoprotein Lp 91.2 9.2 0.0002 36.1 14.9 142 311-453 25-178 (253)
393 PHA02713 hypothetical protein; 91.1 3 6.5E-05 44.3 12.6 91 331-426 433-538 (557)
394 PRK13684 Ycf48-like protein; P 90.6 18 0.0004 35.6 16.9 107 310-420 215-330 (334)
395 PF14727 PHTB1_N: PTHB1 N-term 90.6 22 0.00047 36.2 18.0 59 362-420 145-203 (418)
396 PF05694 SBP56: 56kDa selenium 90.6 5 0.00011 40.5 12.6 106 329-434 221-357 (461)
397 PF12768 Rax2: Cortical protei 90.3 7.2 0.00016 37.4 13.2 117 330-451 16-147 (281)
398 PF10647 Gmad1: Lipoprotein Lp 90.1 17 0.00037 34.3 16.7 103 311-414 67-188 (253)
399 TIGR03074 PQQ_membr_DH membran 90.0 5.7 0.00012 43.8 13.6 109 320-428 194-351 (764)
400 PF12657 TFIIIC_delta: Transcr 89.4 3.4 7.5E-05 36.5 9.7 30 310-339 86-122 (173)
401 PF10313 DUF2415: Uncharacteri 89.3 1.5 3.2E-05 28.9 5.2 31 392-422 1-34 (43)
402 KOG4441 Proteins containing BT 89.1 10 0.00022 40.5 14.4 116 313-428 326-459 (571)
403 PF14761 HPS3_N: Hermansky-Pud 88.9 17 0.00037 33.2 13.6 110 314-425 22-167 (215)
404 PF07569 Hira: TUP1-like enhan 88.6 5.5 0.00012 36.7 10.7 74 311-387 14-102 (219)
405 COG3386 Gluconolactonase [Carb 88.4 26 0.00056 34.1 18.1 108 302-411 155-275 (307)
406 TIGR02604 Piru_Ver_Nterm putat 88.3 13 0.00028 37.2 14.1 98 310-410 14-142 (367)
407 KOG3630 Nuclear pore complex, 88.2 3.1 6.6E-05 46.4 9.7 98 310-408 156-260 (1405)
408 KOG2377 Uncharacterized conser 87.8 25 0.00053 35.7 14.8 118 220-340 64-187 (657)
409 COG5167 VID27 Protein involved 87.6 4.2 9E-05 41.6 9.6 97 324-421 531-632 (776)
410 PF05694 SBP56: 56kDa selenium 87.5 33 0.00071 34.9 15.8 127 330-457 157-328 (461)
411 KOG1897 Damage-specific DNA bi 87.5 53 0.0011 36.6 20.3 108 319-427 498-619 (1096)
412 PF05096 Glu_cyclase_2: Glutam 87.0 28 0.0006 33.0 18.1 180 225-453 47-243 (264)
413 PF12234 Rav1p_C: RAVE protein 86.3 13 0.00028 39.8 13.0 71 307-380 70-156 (631)
414 PF14655 RAB3GAP2_N: Rab3 GTPa 86.1 8.8 0.00019 39.0 11.3 49 208-256 293-341 (415)
415 PLN00033 photosystem II stabil 86.1 41 0.0009 34.0 18.6 105 309-418 280-396 (398)
416 PF14583 Pectate_lyase22: Olig 86.1 40 0.00086 33.8 15.7 107 321-427 93-228 (386)
417 PF15390 DUF4613: Domain of un 85.4 28 0.0006 36.6 14.3 95 314-410 117-220 (671)
418 COG3823 Glutamine cyclotransfe 85.4 23 0.0005 32.2 12.1 169 233-409 55-247 (262)
419 KOG4441 Proteins containing BT 84.5 25 0.00055 37.5 14.5 103 321-426 429-551 (571)
420 KOG3616 Selective LIM binding 84.1 2.5 5.3E-05 45.0 6.3 78 342-422 7-84 (1636)
421 PF12657 TFIIIC_delta: Transcr 83.9 5.6 0.00012 35.1 7.9 32 392-423 86-123 (173)
422 KOG4460 Nuclear pore complex, 83.9 11 0.00024 38.8 10.5 76 351-427 105-204 (741)
423 TIGR03075 PQQ_enz_alc_DH PQQ-d 83.5 17 0.00037 38.3 12.6 105 320-428 69-196 (527)
424 PF14583 Pectate_lyase22: Olig 82.9 13 0.00029 37.1 10.6 90 329-420 263-380 (386)
425 PF02897 Peptidase_S9_N: Proly 82.4 59 0.0013 32.8 24.5 197 224-421 125-357 (414)
426 TIGR03075 PQQ_enz_alc_DH PQQ-d 82.3 18 0.00038 38.3 12.1 57 372-428 441-497 (527)
427 PF07995 GSDH: Glucose / Sorbo 82.3 39 0.00085 33.2 14.0 25 225-250 4-28 (331)
428 PF07995 GSDH: Glucose / Sorbo 82.0 20 0.00044 35.3 11.8 102 311-413 3-135 (331)
429 KOG4499 Ca2+-binding protein R 81.8 32 0.0007 31.9 11.7 130 312-449 111-262 (310)
430 PHA03098 kelch-like protein; P 81.7 34 0.00073 36.1 14.2 104 319-425 389-515 (534)
431 KOG2247 WD40 repeat-containing 81.7 0.21 4.6E-06 50.3 -2.3 139 221-409 33-177 (615)
432 PF08728 CRT10: CRT10; InterP 81.1 12 0.00025 40.6 10.1 129 225-379 103-245 (717)
433 KOG1897 Damage-specific DNA bi 80.7 1E+02 0.0022 34.6 16.8 108 310-421 830-942 (1096)
434 KOG1983 Tomosyn and related SN 80.5 33 0.00072 39.2 14.0 34 222-255 35-68 (993)
435 KOG1900 Nuclear pore complex, 80.2 18 0.00039 41.3 11.4 72 349-424 178-275 (1311)
436 PF10168 Nup88: Nuclear pore c 80.0 10 0.00022 41.4 9.6 91 224-340 86-181 (717)
437 PF14870 PSII_BNR: Photosynthe 79.7 49 0.0011 32.1 13.2 112 308-423 143-262 (302)
438 PF13449 Phytase-like: Esteras 77.9 73 0.0016 31.2 16.2 143 310-454 20-228 (326)
439 PHA02713 hypothetical protein; 77.4 26 0.00056 37.3 11.6 105 319-426 303-445 (557)
440 PF10395 Utp8: Utp8 family; I 76.9 91 0.002 33.7 15.0 162 222-386 129-311 (670)
441 KOG1916 Nuclear protein, conta 75.1 2.6 5.7E-05 45.8 3.2 21 233-253 194-214 (1283)
442 COG3490 Uncharacterized protei 74.9 35 0.00077 32.6 10.1 96 314-410 72-180 (366)
443 PF11635 Med16: Mediator compl 74.8 1.4E+02 0.0031 33.1 17.4 68 348-416 258-345 (753)
444 PHA02790 Kelch-like protein; P 74.3 97 0.0021 32.2 14.8 100 320-425 363-474 (480)
445 TIGR03074 PQQ_membr_DH membran 74.1 1.2E+02 0.0027 33.6 15.8 67 320-386 260-350 (764)
446 TIGR03118 PEPCTERM_chp_1 conse 73.6 91 0.002 30.2 13.3 112 311-423 24-172 (336)
447 PF10214 Rrn6: RNA polymerase 72.8 1.6E+02 0.0035 32.7 16.8 138 308-451 78-257 (765)
448 PF14781 BBS2_N: Ciliary BBSom 72.8 43 0.00093 28.2 9.2 70 354-425 3-85 (136)
449 PRK10115 protease 2; Provision 72.3 1.6E+02 0.0034 32.4 17.3 32 223-254 127-163 (686)
450 KOG2280 Vacuolar assembly/sort 71.7 64 0.0014 35.0 12.2 45 294-338 68-112 (829)
451 PRK13684 Ycf48-like protein; P 71.4 95 0.0021 30.5 13.2 104 309-416 172-283 (334)
452 PF14655 RAB3GAP2_N: Rab3 GTPa 71.0 56 0.0012 33.3 11.5 52 350-401 57-118 (415)
453 PF07676 PD40: WD40-like Beta 71.0 15 0.00032 23.1 5.0 30 389-418 6-38 (39)
454 PF14727 PHTB1_N: PTHB1 N-term 70.2 1.3E+02 0.0029 30.7 14.3 104 321-424 38-166 (418)
455 TIGR02276 beta_rpt_yvtn 40-res 69.3 24 0.00052 22.3 5.9 36 322-357 6-41 (42)
456 KOG4460 Nuclear pore complex, 68.9 55 0.0012 34.0 10.6 96 223-343 104-203 (741)
457 COG5167 VID27 Protein involved 68.3 54 0.0012 33.9 10.4 64 315-380 568-632 (776)
458 PF07676 PD40: WD40-like Beta 67.0 19 0.00041 22.6 4.9 30 220-249 6-38 (39)
459 PRK10115 protease 2; Provision 66.8 2E+02 0.0044 31.5 17.2 108 310-420 127-254 (686)
460 TIGR02276 beta_rpt_yvtn 40-res 65.9 20 0.00044 22.6 5.0 39 361-399 2-41 (42)
461 PF11715 Nup160: Nucleoporin N 65.5 9.8 0.00021 40.3 5.2 28 319-346 229-256 (547)
462 PHA02790 Kelch-like protein; P 64.3 1.9E+02 0.004 30.2 15.2 99 322-426 321-428 (480)
463 COG1520 FOG: WD40-like repeat 64.0 85 0.0018 31.2 11.4 107 319-428 67-178 (370)
464 TIGR03606 non_repeat_PQQ dehyd 63.4 1.9E+02 0.0041 29.9 18.4 37 217-253 24-60 (454)
465 TIGR02171 Fb_sc_TIGR02171 Fibr 62.7 38 0.00082 37.6 8.8 63 372-434 329-398 (912)
466 smart00564 PQQ beta-propeller 62.5 21 0.00044 21.3 4.2 27 320-346 6-32 (33)
467 PF05935 Arylsulfotrans: Aryls 62.3 2E+02 0.0044 29.9 14.2 108 315-426 153-306 (477)
468 KOG2377 Uncharacterized conser 61.8 2E+02 0.0043 29.6 13.8 113 308-423 65-187 (657)
469 PF14761 HPS3_N: Hermansky-Pud 61.7 37 0.00081 31.0 7.3 49 363-411 29-79 (215)
470 KOG1916 Nuclear protein, conta 61.3 3.9 8.4E-05 44.6 1.1 115 305-421 128-265 (1283)
471 PF11538 Snurportin1: Snurport 61.3 12 0.00025 24.3 2.9 25 33-58 2-26 (40)
472 PF11715 Nup160: Nucleoporin N 60.8 17 0.00037 38.5 6.0 38 223-260 215-256 (547)
473 PHA03098 kelch-like protein; P 60.3 68 0.0015 33.8 10.4 104 320-426 295-419 (534)
474 PF08801 Nucleoporin_N: Nup133 59.5 1.8E+02 0.004 29.5 13.1 32 392-423 190-221 (422)
475 TIGR03032 conserved hypothetic 59.1 87 0.0019 30.5 9.6 78 317-397 210-307 (335)
476 PF01011 PQQ: PQQ enzyme repea 59.0 25 0.00055 22.1 4.3 28 322-349 2-29 (38)
477 KOG3616 Selective LIM binding 58.7 1.7E+02 0.0038 31.8 12.3 33 222-254 14-46 (1636)
478 KOG3522 Predicted guanine nucl 57.8 1.2E+02 0.0027 33.3 11.3 71 307-381 624-698 (925)
479 PF15477 SMAP: Small acidic pr 57.7 6.8 0.00015 28.8 1.6 18 47-64 9-26 (69)
480 COG4590 ABC-type uncharacteriz 57.5 41 0.00088 34.2 7.3 60 322-383 330-389 (733)
481 COG5290 IkappaB kinase complex 54.9 2.5E+02 0.0053 31.0 12.8 102 313-416 250-361 (1243)
482 PF01436 NHL: NHL repeat; Int 54.2 31 0.00067 20.1 3.8 25 394-418 4-28 (28)
483 PF03088 Str_synth: Strictosid 53.0 28 0.00061 27.0 4.4 42 369-410 34-75 (89)
484 TIGR03606 non_repeat_PQQ dehyd 52.7 2.8E+02 0.0062 28.6 14.9 53 307-359 27-88 (454)
485 PF12341 DUF3639: Protein of u 52.5 31 0.00067 20.3 3.4 26 392-419 2-27 (27)
486 PF01731 Arylesterase: Arylest 51.7 80 0.0017 24.3 6.7 49 372-422 36-85 (86)
487 PF10214 Rrn6: RNA polymerase 51.4 3.9E+02 0.0083 29.8 23.1 109 310-422 146-277 (765)
488 COG4590 ABC-type uncharacteriz 51.3 1.2E+02 0.0025 31.1 9.3 102 322-425 282-390 (733)
489 PF13449 Phytase-like: Esteras 50.9 2.5E+02 0.0054 27.5 19.7 109 311-421 86-249 (326)
490 PF07250 Glyoxal_oxid_N: Glyox 50.5 27 0.00059 32.7 4.8 87 332-419 48-146 (243)
491 PLN00033 photosystem II stabil 48.7 2.6E+02 0.0056 28.4 11.8 107 312-422 241-357 (398)
492 KOG2280 Vacuolar assembly/sort 47.0 4.3E+02 0.0092 29.0 14.7 35 349-384 216-250 (829)
493 TIGR03548 mutarot_permut cycli 46.7 2.8E+02 0.0061 26.8 12.7 82 330-412 139-233 (323)
494 PLN02153 epithiospecifier prot 45.7 3E+02 0.0065 26.9 12.6 65 361-426 137-230 (341)
495 KOG1983 Tomosyn and related SN 45.7 86 0.0019 35.9 8.6 77 303-384 192-268 (993)
496 PF03745 DUF309: Domain of unk 44.8 5.2 0.00011 28.7 -0.8 28 10-59 13-40 (62)
497 PF08954 DUF1900: Domain of un 44.4 89 0.0019 26.4 6.5 62 390-455 9-71 (136)
498 PF13570 PQQ_3: PQQ-like domai 43.0 80 0.0017 19.9 4.8 21 361-381 20-40 (40)
499 PRK13615 lipoprotein LpqB; Pro 42.8 4.4E+02 0.0096 28.1 16.7 74 349-423 416-504 (557)
500 KOG1898 Splicing factor 3b, su 42.2 1.6E+02 0.0034 33.4 9.4 106 348-463 934-1048(1205)
No 1
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.9e-59 Score=469.40 Aligned_cols=438 Identities=38% Similarity=0.665 Sum_probs=319.5
Q ss_pred CCccceeeecccccccccCccccccCCCCCcccceeccCCCCHHHHHHHHHHhcCCCCCcCCCc-ccccCC-------cc
Q 012367 6 EGVDDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRKNFLCKMGLVEFSSKNE-ITFDDS-------SQ 77 (465)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~ 77 (465)
+||||+||||.|+++ ..|+||+.+|+||.|||++||++|||+....... .+.... +.
T Consensus 6 ~ee~~~f~~~~~~~~---------------~~~~~w~~~p~sv~err~~~l~~mgls~~~~~~~~~~~~~~~~~~~~~~~ 70 (712)
T KOG0283|consen 6 EEEEDRFFDASERVS---------------PDYDLWTSSPGSVSERRRKFLNGMGLSSKKTLSRSETVDRLSSSSVESNV 70 (712)
T ss_pred ccccccccccccccC---------------cchhhhhcCccchhHHHHHHhhhhcccccccccccccccccccccccccc
Confidence 355599999999996 1199999999999999999999999996654221 111110 00
Q ss_pred ccCCcc-ccc-----ccCCccCCCCCCCCCCccccccccCCccceeccc---------cccccCcceeeeecccc-cCCC
Q 012367 78 MMGLDR-ITE-----CSGAVSGSSMNRADENLNCFDREMDSEANCMVDE---------LEQDQMNECVVTLEGES-NGFS 141 (465)
Q Consensus 78 ~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~r~~d~~~~~~~~~---------l~~~~~~~~~~~~~~~~-~~~s 141 (465)
+....+ +.+ +..+. .++.........+ + .++.+.++++.+ +.+.+.....+.++++. ++.+
T Consensus 71 ~~~~~~~v~~~~~~~~~~~~-~~s~~~~~~~~~~-~-~~~~~~e~~v~e~~~~~~~~~~sd~~~~~~~~~e~~e~~~g~~ 147 (712)
T KOG0283|consen 71 DESNHNSVEDTDSEQCRPSS-SSSKSRVSQSSSS-I-ELDTGDEFSVSENPEDGSVNRLSDVGTGASSTLEELESSPGES 147 (712)
T ss_pred cccccccccccccccCCccc-ccccccccccccc-e-eecccceeeEeeccCccccccccCCCcccccccccccCCcCcc
Confidence 000000 000 00000 0000000000011 1 158888888876 56888999999999998 6888
Q ss_pred hhhhcccCC--CC----------ccCCC-----chhhHHHHHHHHHHhhhcccccc---------c-ccc---------C
Q 012367 142 QSVDKFENP--FP----------ECKGV-----NIKKVKKLWKRIISMKKRNVETC---------M-SEK---------R 185 (465)
Q Consensus 142 ~~~~~l~~~--~~----------~~~~~-----~~~~~~~~~k~~~~~~~~~~~~~---------~-~~~---------~ 185 (465)
+.+.+|++. ++ ...+. .++..+.|.+++...... .... . ... .
T Consensus 148 ~~v~~l~~~~~~~~~~~~~~~~~~~s~s~~~~~~~r~~~~~l~~~k~~~~~-~s~~~~~~~~~~~~d~~~~~~~~~~~~~ 226 (712)
T KOG0283|consen 148 SRVKELGDRENADLDEMLTKYNDDVSGSVLLRKSKRYGKRWLKSLKVVAHS-LSSLSENRRSRFDSDSSSQFHNYLSEPK 226 (712)
T ss_pred cchhhhhhhcccccchhhcccccccccccccchhhhhhhhhhhhccccccc-cccccccccccccccchhcccccccccc
Confidence 889988771 11 11112 223334466665443221 1110 0 000 0
Q ss_pred ---CCCCCCCcchhhHHhhccccccccccccchhhhc-cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeee
Q 012367 186 ---KPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQ-AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSF 261 (465)
Q Consensus 186 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~ 261 (465)
........+.++++++.+|..+++..++..|.++ +|+++||+|+||+||+||||||+||.|+||.+.+........
T Consensus 227 ~~~~~~~~~~~~~rvkv~~~~K~~kelsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~ 306 (712)
T KOG0283|consen 227 SSKDKEMKYNLPSRVKVRHYKKSPKELSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAE 306 (712)
T ss_pred cccccccccCCcceEEecccCCCcccceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccc
Confidence 0000112338899999999999999999999999 999999999999999999999999999999987733321111
Q ss_pred cCCC-------------Ccccc--cCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCCCEEEEE
Q 012367 262 TDDG-------------GFGSN--AKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSC 326 (465)
Q Consensus 262 ~~~~-------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~ 326 (465)
.... +.... .................+..+..++.+..+|++.+.||.++|++|.|+.+++|+|+
T Consensus 307 ~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSS 386 (712)
T KOG0283|consen 307 GDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSS 386 (712)
T ss_pred cccchhhhhhhhccccCccccccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEec
Confidence 1100 00000 11111222223333344778888999999999999999999999999999999999
Q ss_pred eCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEE
Q 012367 327 SMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF 406 (465)
Q Consensus 327 s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l 406 (465)
|+|+|||||++....|+++|.|.++|+||+|+|.|++||++|+.|++||||++...+++.|.+....|+++||.|||++.
T Consensus 387 SMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~a 466 (712)
T KOG0283|consen 387 SMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGA 466 (712)
T ss_pred cccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCcEEEEEecCCceeee-EeeecCcccccCCceeeEEEeecCC--------ccceeeeec
Q 012367 407 IVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQGRISKN--------YDNFRRFQT 462 (465)
Q Consensus 407 ~sgs~dG~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~It~~~f~p~gs--------~d~~~~~~~ 462 (465)
++|+.+|.|++|++.+.+++.. ++..+++++...++|||+||.|... +..+|+++.
T Consensus 467 vIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 467 VIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDG 531 (712)
T ss_pred EEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEec
Confidence 9999999999999999999988 9999998888888999999998755 344777765
No 2
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=6.1e-30 Score=231.34 Aligned_cols=230 Identities=21% Similarity=0.360 Sum_probs=178.7
Q ss_pred chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC-
Q 012367 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD- 292 (465)
Q Consensus 214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 292 (465)
..++|+||.+.|.+|.|++|.++|+|+|.||.+.|||.-+.........+..-+..+. +.+.+...++....+
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA------~sPSg~~VAcGGLdN~ 120 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCA------YSPSGNFVACGGLDNK 120 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEE------ECCCCCeEEecCcCce
Confidence 3478999999999999999999999999999999999877555444333322111111 111111111111111
Q ss_pred -ceeeec-------CCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCC
Q 012367 293 -EVFQIE-------ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDN 363 (465)
Q Consensus 293 -~~~~~~-------~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~ 363 (465)
.+|.+. .+..+++.+|++.+.|+.|-+++.|+|+|.|.+..+||+++++.+..| +|.+.|.++.++|.+++
T Consensus 121 Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 121 CSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred eEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 122221 133567889999999999999999999999999999999999999999 69999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCc
Q 012367 364 YFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (465)
Q Consensus 364 ~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 442 (465)
.|++|+-|++.++||++.+..+. +.+|...|++|+|.|+|.-+++|+.|+++++||++..... ..+. +-.....
T Consensus 201 tFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~-a~ys----~~~~~~g 275 (343)
T KOG0286|consen 201 TFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQEL-AVYS----HDSIICG 275 (343)
T ss_pred eEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEE-eeec----cCcccCC
Confidence 99999999999999999987765 8899999999999999999999999999999999976432 1221 1123467
Q ss_pred eeeEEEeecCCc
Q 012367 443 ITGIQGRISKNY 454 (465)
Q Consensus 443 It~~~f~p~gs~ 454 (465)
|+++.|+.+|.+
T Consensus 276 itSv~FS~SGRl 287 (343)
T KOG0286|consen 276 ITSVAFSKSGRL 287 (343)
T ss_pred ceeEEEcccccE
Confidence 999999999754
No 3
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=1.1e-30 Score=263.66 Aligned_cols=202 Identities=29% Similarity=0.514 Sum_probs=177.5
Q ss_pred ccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCcee
Q 012367 208 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 287 (465)
Q Consensus 208 ~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (465)
+........++.||.++|..++|+|+.++|+++|+|++||+|.+.+..
T Consensus 437 D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s-------------------------------- 484 (707)
T KOG0263|consen 437 DDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS-------------------------------- 484 (707)
T ss_pred cccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccce--------------------------------
Confidence 334445567789999999999999999999999999999999998743
Q ss_pred EecCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEE
Q 012367 288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYF 365 (465)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l 365 (465)
.+-.+.||..+|+++.|+|-| +++|+|.|++.++|.....++++.| +|.+.|.|+.|+| +.+|+
T Consensus 485 -------------~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHP-Ns~Y~ 550 (707)
T KOG0263|consen 485 -------------CLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHP-NSNYV 550 (707)
T ss_pred -------------eEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECC-ccccc
Confidence 345667999999999999987 8999999999999999999999999 6999999999999 99999
Q ss_pred EEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCcee
Q 012367 366 ISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 444 (465)
Q Consensus 366 ~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It 444 (465)
++||.|.+||+||+.+|..++ +.+|..+|++++|+|+|++|++|+.||.|.+||+.++.+... .+.+.+.|.
T Consensus 551 aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~-------l~~Ht~ti~ 623 (707)
T KOG0263|consen 551 ATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQ-------LKGHTGTIY 623 (707)
T ss_pred ccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhh-------hhcccCcee
Confidence 999999999999999998887 889999999999999999999999999999999999877432 222347899
Q ss_pred eEEEeecCC------ccc-eeeeec
Q 012367 445 GIQGRISKN------YDN-FRRFQT 462 (465)
Q Consensus 445 ~~~f~p~gs------~d~-~~~~~~ 462 (465)
++.|+.+|. -|+ +++|+.
T Consensus 624 SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 624 SLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred EEEEecCCCEEEecCCCCeEEEEEc
Confidence 999998743 344 788874
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.8e-30 Score=245.07 Aligned_cols=261 Identities=17% Similarity=0.301 Sum_probs=195.7
Q ss_pred cccCCCCCCCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCC--CCEEEEEeCCCcEEEEecCCceeeee
Q 012367 182 SEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPD--GRYLASGGEDGVVRIWHVTSVAASCK 259 (465)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~LaSgs~Dg~V~iWd~~~~~~~~~ 259 (465)
+...+...+....+.+++|. .+.....++|.||++.|.++.|+|. +..||||+.||+|++|++.+......
T Consensus 184 S~ds~~laT~swsG~~kvW~-------~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~ 256 (459)
T KOG0272|consen 184 SRDSKHLATGSWSGLVKVWS-------VPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQD 256 (459)
T ss_pred ecCCCeEEEeecCCceeEee-------cCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhh
Confidence 34444444555666677663 3445667899999999999999997 56999999999999999987544333
Q ss_pred eecCCCCcccccCCCeEEeccCCCCc--eeEecCCceeeec-CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEE
Q 012367 260 SFTDDGGFGSNAKEGKIKFGKKKSSH--VPVVIPDEVFQIE-ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMW 335 (465)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lW 335 (465)
...+...+. .+.+...+... .+....-.+|++. ...+....||...|.+++|+++| +++||+.|..-+||
T Consensus 257 l~gH~~RVs------~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvW 330 (459)
T KOG0272|consen 257 LEGHLARVS------RVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVW 330 (459)
T ss_pred hhcchhhhe------eeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhee
Confidence 322221111 11121111111 1111112344443 34456678999999999999997 78899999999999
Q ss_pred eCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEE-ecccCCCCeEEEEEee-CCCEEEEEEcC
Q 012367 336 QVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIP-DGKGFIVGSIT 412 (465)
Q Consensus 336 D~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~-~~~~~~~~V~sv~~sp-dg~~l~sgs~d 412 (465)
|++++.++..+ +|...|..|.|+| +|..+||||.|++++|||++....+ .+.+|.+-|+.|+|+| .|.+|++++.|
T Consensus 331 DlRtgr~im~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD 409 (459)
T KOG0272|consen 331 DLRTGRCIMFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD 409 (459)
T ss_pred ecccCcEEEEecccccceeeEeECC-CceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccC
Confidence 99999999999 6999999999999 9999999999999999999976655 4788999999999999 78999999999
Q ss_pred CcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC------CccceeeeecC
Q 012367 413 GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK------NYDNFRRFQTP 463 (465)
Q Consensus 413 G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g------s~d~~~~~~~p 463 (465)
+++++|...+... +..+..|. .+|.++.++|++ +||++..++.|
T Consensus 410 ~t~kiWs~~~~~~-~ksLaGHe------~kV~s~Dis~d~~~i~t~s~DRT~KLW~~ 459 (459)
T KOG0272|consen 410 NTVKIWSTRTWSP-LKSLAGHE------GKVISLDISPDSQAIATSSFDRTIKLWRP 459 (459)
T ss_pred cceeeecCCCccc-chhhcCCc------cceEEEEeccCCceEEEeccCceeeeccC
Confidence 9999999887644 33444444 678888888775 77877666654
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=4.5e-30 Score=242.31 Aligned_cols=232 Identities=23% Similarity=0.374 Sum_probs=185.9
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEe--cCCceeee
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV--IPDEVFQI 297 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 297 (465)
|-+.+|..+.||+++..|||||.+|.++||+..+....+.+..+...+......... .....+... ...++|..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~----~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVD----SDLNLATASADGTVKLWKL 248 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCC----CccceeeeccCCceeeecc
Confidence 778999999999999999999999999999999987777766655443322211110 011111111 12245555
Q ss_pred cC-CcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcE
Q 012367 298 EE-SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKV 374 (465)
Q Consensus 298 ~~-~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I 374 (465)
+. .++..+.||...|..++|+|+| +|+|++.|.+-++||+.++..+... +|...|.+++|+| +|.+++||+.|..-
T Consensus 249 ~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~ 327 (459)
T KOG0272|consen 249 SQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLG 327 (459)
T ss_pred CCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecC-CCceeeccCccchh
Confidence 54 7899999999999999999986 9999999999999999998766555 7999999999999 99999999999999
Q ss_pred EEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEee---
Q 012367 375 RIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRI--- 450 (465)
Q Consensus 375 ~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p--- 450 (465)
||||+++++.+- +.+|...|.+|+|+|+|..|++|+.|++|+|||++.... +..+..|. +-|+.+.|.|
T Consensus 328 RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~-ly~ipAH~------nlVS~Vk~~p~~g 400 (459)
T KOG0272|consen 328 RVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE-LYTIPAHS------NLVSQVKYSPQEG 400 (459)
T ss_pred heeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc-ceeccccc------chhhheEecccCC
Confidence 999999987664 888999999999999999999999999999999997665 55666666 5566666665
Q ss_pred ----cCCccc-eeeeecC
Q 012367 451 ----SKNYDN-FRRFQTP 463 (465)
Q Consensus 451 ----~gs~d~-~~~~~~p 463 (465)
+.+||+ +++|.++
T Consensus 401 ~fL~TasyD~t~kiWs~~ 418 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTR 418 (459)
T ss_pred eEEEEcccCcceeeecCC
Confidence 578887 4666544
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.2e-29 Score=236.61 Aligned_cols=257 Identities=17% Similarity=0.312 Sum_probs=191.2
Q ss_pred cccCCCCCCCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeee
Q 012367 182 SEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSF 261 (465)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~ 261 (465)
++..+...+...+..++.|. +..-.+.++.++|...|.|++|+|||+.||||+.||.|++||..+++.....+
T Consensus 124 sp~g~~l~tGsGD~TvR~WD-------~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l 196 (480)
T KOG0271|consen 124 SPTGSRLVTGSGDTTVRLWD-------LDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRAL 196 (480)
T ss_pred cCCCceEEecCCCceEEeec-------cCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccc
Confidence 44444445556666666663 34445567889999999999999999999999999999999999887766555
Q ss_pred cCCCCcccccCCCeEEeccCCCCceeEecCC--ceeeec-CCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCC
Q 012367 262 TDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD--EVFQIE-ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVG 338 (465)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~ 338 (465)
..............+.........+...-.+ .+|++. ...+..+.||+.+|+|+.|-.++++++||.|++|++|+..
T Consensus 197 ~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~ 276 (480)
T KOG0271|consen 197 RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRAL 276 (480)
T ss_pred cCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEcc
Confidence 4443322111111111111111111111111 234432 4567888999999999999989999999999999999965
Q ss_pred CCeEeEE-------------------------------------------------------------------------
Q 012367 339 CNQCLNV------------------------------------------------------------------------- 345 (465)
Q Consensus 339 ~~~~l~~------------------------------------------------------------------------- 345 (465)
.|.+.+.
T Consensus 277 dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~ 356 (480)
T KOG0271|consen 277 DGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS 356 (480)
T ss_pred chhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc
Confidence 5432211
Q ss_pred -------ecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEE
Q 012367 346 -------FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHF 417 (465)
Q Consensus 346 -------~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~i 417 (465)
.+|..-|+.+.|+| |++|++++|.|..|++||.++|+.+. +.+|-..|..++|+.|.+.|++|+.|.++++
T Consensus 357 kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKv 435 (480)
T KOG0271|consen 357 KKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKV 435 (480)
T ss_pred ccchhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEE
Confidence 12666789999999 99999999999999999999998775 8889999999999999999999999999999
Q ss_pred EEecCCceeeeEeeecCcccccCCceeeEEEeecCC
Q 012367 418 YKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKN 453 (465)
Q Consensus 418 wd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs 453 (465)
|++++.++.. ++.+ +...+..+.++|+|+
T Consensus 436 w~V~tkKl~~---DLpG----h~DEVf~vDwspDG~ 464 (480)
T KOG0271|consen 436 WDVRTKKLKQ---DLPG----HADEVFAVDWSPDGQ 464 (480)
T ss_pred EEeeeeeecc---cCCC----CCceEEEEEecCCCc
Confidence 9999987743 3444 557899999999864
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.5e-29 Score=232.79 Aligned_cols=168 Identities=29% Similarity=0.504 Sum_probs=151.3
Q ss_pred ccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (465)
Q Consensus 212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (465)
..+...+.||.++|.|+.|+|+|.+||||+.|.++|+||+.+
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~T-------------------------------------- 146 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDT-------------------------------------- 146 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCC--------------------------------------
Confidence 356678899999999999999999999999999999999987
Q ss_pred CceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEE-e-cCCCceEEEEEccC----CCCE
Q 012367 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV-F-DHHNYVTCVQFNPI----DDNY 364 (465)
Q Consensus 292 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~-~-~h~~~V~~i~fsp~----~~~~ 364 (465)
..|.++..+|...|.|++|+||+ .|++|+.||+|++||..+|+++.. + +|...|++++|.|. ..++
T Consensus 147 -------eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~ 219 (480)
T KOG0271|consen 147 -------ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRR 219 (480)
T ss_pred -------CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccc
Confidence 36788999999999999999997 899999999999999999887544 4 69999999999874 4679
Q ss_pred EEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 365 FISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 365 l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
|++++.||.|+|||+..+.++. +.+|+..|+|++|--+| +|++|+.|++|++|+...+.+
T Consensus 220 las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~ 280 (480)
T KOG0271|consen 220 LASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKL 280 (480)
T ss_pred eecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhH
Confidence 9999999999999999887665 88999999999998766 899999999999999987655
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=2.9e-28 Score=219.31 Aligned_cols=198 Identities=20% Similarity=0.410 Sum_probs=168.6
Q ss_pred ccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (465)
Q Consensus 212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (465)
-.+.+.+.||...|..+..+++|++.+|+|.|+++++||+.++
T Consensus 53 G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g------------------------------------- 95 (315)
T KOG0279|consen 53 GVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG------------------------------------- 95 (315)
T ss_pred CceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC-------------------------------------
Confidence 3455778999999999999999999999999999999999874
Q ss_pred CceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec--CCCceEEEEEccCC-CCEEEE
Q 012367 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPID-DNYFIS 367 (465)
Q Consensus 292 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~--h~~~V~~i~fsp~~-~~~l~s 367 (465)
++.+.|.||...|.+++|++++ +++|||.|++|++|++.......... +.+.|.|++|+|.. ..+|++
T Consensus 96 --------~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs 167 (315)
T KOG0279|consen 96 --------ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVS 167 (315)
T ss_pred --------cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEE
Confidence 3467788999999999999975 99999999999999998554443333 37899999999943 779999
Q ss_pred EeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeE
Q 012367 368 GSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 446 (465)
Q Consensus 368 gs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~ 446 (465)
+|.|++|++||+++.++.. +.+|.+.++.++++|||..+++|+.||.+.+||++.++-. ..+. +...|.++
T Consensus 168 ~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~l-ysl~-------a~~~v~sl 239 (315)
T KOG0279|consen 168 ASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNL-YSLE-------AFDIVNSL 239 (315)
T ss_pred ccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCcee-Eecc-------CCCeEeeE
Confidence 9999999999999998876 8899999999999999999999999999999999987652 2221 34679999
Q ss_pred EEeecCCc------cceeeeec
Q 012367 447 QGRISKNY------DNFRRFQT 462 (465)
Q Consensus 447 ~f~p~gs~------d~~~~~~~ 462 (465)
.|+|+.-. -.+++|+.
T Consensus 240 ~fspnrywL~~at~~sIkIwdl 261 (315)
T KOG0279|consen 240 CFSPNRYWLCAATATSIKIWDL 261 (315)
T ss_pred EecCCceeEeeccCCceEEEec
Confidence 99998533 34777764
No 9
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=1.9e-28 Score=247.53 Aligned_cols=166 Identities=26% Similarity=0.564 Sum_probs=154.9
Q ss_pred cccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec
Q 012367 211 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 290 (465)
Q Consensus 211 ~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (465)
...+...++||..|||.+.|+|.|-|+||||.|++-++|....
T Consensus 482 t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~------------------------------------- 524 (707)
T KOG0263|consen 482 TWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH------------------------------------- 524 (707)
T ss_pred cceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc-------------------------------------
Confidence 3445567789999999999999999999999999999999875
Q ss_pred CCceeeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEE
Q 012367 291 PDEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISG 368 (465)
Q Consensus 291 ~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sg 368 (465)
..|++.+.||.++|.|+.|+|+ +++++||.|++||+||+.+|..++.| +|..+|++++|+| +|+||++|
T Consensus 525 --------~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp-~Gr~LaSg 595 (707)
T KOG0263|consen 525 --------NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSP-CGRYLASG 595 (707)
T ss_pred --------CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcC-CCceEeec
Confidence 2678899999999999999997 69999999999999999999999999 6999999999999 99999999
Q ss_pred eCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367 369 SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG 422 (465)
Q Consensus 369 s~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~ 422 (465)
+.|+.|.|||+.++.++. +.+|++.|.++.|+.||..||+|+.|.+|++||+..
T Consensus 596 ~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 596 DEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 999999999999987765 889999999999999999999999999999999864
No 10
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.95 E-value=1.1e-26 Score=215.15 Aligned_cols=201 Identities=21% Similarity=0.446 Sum_probs=173.7
Q ss_pred ccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEe
Q 012367 210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 289 (465)
Q Consensus 210 ~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (465)
.+.+....+++|.+.|.|+++.|.+.+||||+.|++|+|||+.+++.
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L--------------------------------- 185 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL--------------------------------- 185 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE---------------------------------
Confidence 34455688999999999999999999999999999999999998643
Q ss_pred cCCceeeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEE
Q 012367 290 IPDEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFIS 367 (465)
Q Consensus 290 ~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~s 367 (465)
..++.||...|..+++++- .||++++.|+.|+.||+...+.++.+ +|-..|.|++.+| .-+.|++
T Consensus 186 ------------kltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhP-Tldvl~t 252 (460)
T KOG0285|consen 186 ------------KLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHP-TLDVLVT 252 (460)
T ss_pred ------------EEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccc-cceeEEe
Confidence 4567799999999999985 69999999999999999999999988 6999999999999 8899999
Q ss_pred EeCCCcEEEEeCCCCeEE-ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeE
Q 012367 368 GSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 446 (465)
Q Consensus 368 gs~Dg~I~iwd~~~~~~~-~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~ 446 (465)
|+.|.++||||+++...+ .+.+|...|.+|.+.|-...+++|+.|++|++||+..++-.. .+..|. +.+..+
T Consensus 253 ~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~-tlt~hk------ksvral 325 (460)
T KOG0285|consen 253 GGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMI-TLTHHK------KSVRAL 325 (460)
T ss_pred cCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeE-eeeccc------ceeeEE
Confidence 999999999999997655 488999999999999988899999999999999999886532 333333 345555
Q ss_pred EEe------ecCCccceeeeecC
Q 012367 447 QGR------ISKNYDNFRRFQTP 463 (465)
Q Consensus 447 ~f~------p~gs~d~~~~~~~p 463 (465)
... .+++-|+++.|..|
T Consensus 326 ~lhP~e~~fASas~dnik~w~~p 348 (460)
T KOG0285|consen 326 CLHPKENLFASASPDNIKQWKLP 348 (460)
T ss_pred ecCCchhhhhccCCccceeccCC
Confidence 555 35788999999988
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=4.4e-26 Score=217.99 Aligned_cols=230 Identities=21% Similarity=0.421 Sum_probs=178.2
Q ss_pred cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (465)
Q Consensus 213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (465)
....+|..|++||.+++|+..|.||++++.||++.+||..++.......................+........ -
T Consensus 267 ~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~-----i 341 (524)
T KOG0273|consen 267 NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGC-----I 341 (524)
T ss_pred hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCce-----E
Confidence 34567889999999999999999999999999999999988766554443333311111111111111111100 0
Q ss_pred ceeee-cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccC--------C
Q 012367 293 EVFQI-EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPI--------D 361 (465)
Q Consensus 293 ~~~~~-~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~--------~ 361 (465)
.++.+ ...|+.++.||.+.|.+|.|+|.+ +|+|||.|+|++||......+...+ .|+..|+.+.|+|+ .
T Consensus 342 ~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~ 421 (524)
T KOG0273|consen 342 HVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNM 421 (524)
T ss_pred EEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcC
Confidence 12222 357899999999999999999976 8899999999999999988888888 58889999999883 3
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccC
Q 012367 362 DNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG 440 (465)
Q Consensus 362 ~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~ 440 (465)
+..+++++.|++|++||+..+.++. +..|..+|.+++|+|+|+++++|+.||.|++|++.++++... +. ..
T Consensus 422 ~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s---~~-----~~ 493 (524)
T KOG0273|consen 422 NLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKS---YQ-----GT 493 (524)
T ss_pred CceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEe---ec-----CC
Confidence 4579999999999999999887776 779999999999999999999999999999999999877422 11 23
Q ss_pred CceeeEEEeecCCcc
Q 012367 441 NKITGIQGRISKNYD 455 (465)
Q Consensus 441 ~~It~~~f~p~gs~d 455 (465)
..|..+.|+..|.+-
T Consensus 494 ~~Ifel~Wn~~G~kl 508 (524)
T KOG0273|consen 494 GGIFELCWNAAGDKL 508 (524)
T ss_pred CeEEEEEEcCCCCEE
Confidence 458888888888553
No 12
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.7e-27 Score=216.82 Aligned_cols=328 Identities=17% Similarity=0.274 Sum_probs=228.1
Q ss_pred ccccccCCccceeccccccccCcceeeeecccccCCChhhhcccCCCCccCCCchhhHHHHHHHHHHhhhccc--ccccc
Q 012367 105 CFDREMDSEANCMVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNV--ETCMS 182 (465)
Q Consensus 105 ~~~r~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~--~~~~~ 182 (465)
...|+.|+.+.++.+++..++..+....+..+..... .+. ..+...+++.|..+.++++... +..++
T Consensus 5 ~~~~~~~ei~~aiadl~g~n~~~es~~i~~~~~~~~~-~~~----------~~~g~ll~kkwtSv~rlqKki~~Les~l~ 73 (406)
T KOG0295|consen 5 LSERQRDEINMAIADLSGSNGYSESDRIFHKEASLAT-EMR----------KKDGGLLEKKWTSVDRLQKKIRELESKLD 73 (406)
T ss_pred ecccchHHHHHHHHhhhccccccccceeEeecCCCcc-ccc----------ccccceeeccccccchhHHHHHHHHhhhc
Confidence 4567788888888888766666666655554443322 111 1123334455555555544422 12222
Q ss_pred ccCCCCCCCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec
Q 012367 183 EKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFT 262 (465)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~ 262 (465)
+......... +. .+.+....+.+++...+.+.+|..+|+.+.|+|+-..++++++|++|++||..+++.......
T Consensus 74 ~~~~el~~g~-pt----~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrG 148 (406)
T KOG0295|consen 74 ETGDELIAGD-PT----GSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRG 148 (406)
T ss_pred ccccccccCC-CC----cCccChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhc
Confidence 2222211111 11 112222335667777899999999999999999999999999999999999999877443333
Q ss_pred CCCCcccccCCCeEEeccCCCCceeE--ecCCceeeec--CCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeC
Q 012367 263 DDGGFGSNAKEGKIKFGKKKSSHVPV--VIPDEVFQIE--ESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQV 337 (465)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~ 337 (465)
....+ ..+.+...+...+.+ ..+...|+.. ..+++.+.+|...|.+++|-|. ++++|++.|.+|+.|++
T Consensus 149 Ht~sv------~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~ 222 (406)
T KOG0295|consen 149 HTDSV------FDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWEC 222 (406)
T ss_pred cccce------eEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEec
Confidence 22221 112221111111111 1112233332 3467778899999999999985 59999999999999999
Q ss_pred CCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeC-------------
Q 012367 338 GCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPD------------- 402 (465)
Q Consensus 338 ~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spd------------- 402 (465)
.++.|+.+| .|...|..++.+. ||.++++++.|.+|++|-+.++++.. +..|...|.+++|.|.
T Consensus 223 ~tg~cv~t~~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~ 301 (406)
T KOG0295|consen 223 DTGYCVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGST 301 (406)
T ss_pred ccceeEEeccCchHhEEEEEecC-CeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCC
Confidence 999999999 5999999999999 99999999999999999999886544 7889999999999873
Q ss_pred --CCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc------c-ceeeeec
Q 012367 403 --GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY------D-NFRRFQT 462 (465)
Q Consensus 403 --g~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~------d-~~~~~~~ 462 (465)
++++.+++.|++|++||+.++...+ ++.. +.+.|.++.|+|.|.| | ++|+|+.
T Consensus 302 ~~~~~l~s~SrDktIk~wdv~tg~cL~-tL~g------hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl 363 (406)
T KOG0295|consen 302 NGGQVLGSGSRDKTIKIWDVSTGMCLF-TLVG------HDNWVRGVAFSPGGKYILSCADDKTLRVWDL 363 (406)
T ss_pred CCccEEEeecccceEEEEeccCCeEEE-EEec------ccceeeeeEEcCCCeEEEEEecCCcEEEEEe
Confidence 2589999999999999999986643 3333 4589999999999988 2 3788874
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.94 E-value=8.2e-26 Score=204.63 Aligned_cols=193 Identities=23% Similarity=0.451 Sum_probs=165.4
Q ss_pred chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (465)
Q Consensus 214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (465)
..+++.+|++.+.|+.|-+|+ +|+|+|.|.++.+||++++
T Consensus 137 v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g--------------------------------------- 176 (343)
T KOG0286|consen 137 VSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETG--------------------------------------- 176 (343)
T ss_pred eeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccc---------------------------------------
Confidence 346788999999999999865 7999999999999999985
Q ss_pred eeeecCCcceeeeccccceEEEEecC-C-CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeC
Q 012367 294 VFQIEESPLQELHGHKGDVLDLAWSN-S-NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSI 370 (465)
Q Consensus 294 ~~~~~~~~~~~~~gh~~~V~~l~~s~-~-~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~ 370 (465)
+.+..|.||.+.|.+++++| + +.++||+.|++.+|||++.+.+.+.| +|...|++|+|.| +|.-|++|+.
T Consensus 177 ------~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP-~G~afatGSD 249 (343)
T KOG0286|consen 177 ------QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFP-SGDAFATGSD 249 (343)
T ss_pred ------eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEcc-CCCeeeecCC
Confidence 34677889999999999999 4 59999999999999999999999999 6999999999999 9999999999
Q ss_pred CCcEEEEeCCCCeEEeccc---CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEE
Q 012367 371 DGKVRIWGVCEKRVVDWAD---VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 447 (465)
Q Consensus 371 Dg~I~iwd~~~~~~~~~~~---~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~ 447 (465)
|++.|+||++..+.+.... ....|++++|+..|++|++|..|.+|.+||.-.++... .+. .|.++|+.+.
T Consensus 250 D~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg-~L~------GHeNRvScl~ 322 (343)
T KOG0286|consen 250 DATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVG-VLA------GHENRVSCLG 322 (343)
T ss_pred CceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEE-Eee------ccCCeeEEEE
Confidence 9999999999876655333 34679999999999999999999999999987655422 222 2558999999
Q ss_pred EeecC------Cccc-eeee
Q 012367 448 GRISK------NYDN-FRRF 460 (465)
Q Consensus 448 f~p~g------s~d~-~~~~ 460 (465)
.+|+| ++|. +|+|
T Consensus 323 ~s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 323 VSPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred ECCCCcEEEecchhHheeec
Confidence 99985 5564 4554
No 14
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.94 E-value=3.7e-26 Score=205.70 Aligned_cols=210 Identities=23% Similarity=0.415 Sum_probs=171.4
Q ss_pred cccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCC
Q 012367 205 KCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS 284 (465)
Q Consensus 205 ~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (465)
+..++..-.+.+.|.||...|.+++|+||.+.++|||.|.+|++|++.....
T Consensus 88 rlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck---------------------------- 139 (315)
T KOG0279|consen 88 RLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK---------------------------- 139 (315)
T ss_pred EEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEE----------------------------
Confidence 3345555577789999999999999999999999999999999999876321
Q ss_pred ceeEecCCceeeecCCcceeee--ccccceEEEEecCC--C-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEc
Q 012367 285 HVPVVIPDEVFQIEESPLQELH--GHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFN 358 (465)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~--gh~~~V~~l~~s~~--~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fs 358 (465)
.++. +|.+.|.|+.|+|+ + +++++|.|++|++||+++.+....+ +|+++|+.++++
T Consensus 140 ------------------~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vS 201 (315)
T KOG0279|consen 140 ------------------YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVS 201 (315)
T ss_pred ------------------EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEEC
Confidence 1121 34789999999996 3 8999999999999999998888887 799999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee-EeeecCc-c
Q 012367 359 PIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDR-K 436 (465)
Q Consensus 359 p~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~-~~~~~~~-~ 436 (465)
| ||.+.++|+.||.+.+||++.++.+...++...|.+++|+|+.-.|+.+... .|+|||+.++..... ..+..+. .
T Consensus 202 p-DGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~~~~v~~l~~d~~g~s~ 279 (315)
T KOG0279|consen 202 P-DGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATAT-SIKIWDLESKAVVEELKLDGIGPSS 279 (315)
T ss_pred C-CCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCC-ceEEEeccchhhhhhcccccccccc
Confidence 9 9999999999999999999999999999999999999999998777776655 599999998766433 3333333 2
Q ss_pred cccCCceeeEEEeecCCc------cc-eeeeec
Q 012367 437 KTSGNKITGIQGRISKNY------DN-FRRFQT 462 (465)
Q Consensus 437 ~~~~~~It~~~f~p~gs~------d~-~~~~~~ 462 (465)
+.....-.+++|+++|+- |+ +++|.+
T Consensus 280 ~~~~~~clslaws~dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 280 KAGDPICLSLAWSADGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred ccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEe
Confidence 333456678889988753 44 566654
No 15
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.94 E-value=5.4e-27 Score=216.41 Aligned_cols=253 Identities=17% Similarity=0.295 Sum_probs=185.6
Q ss_pred CCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccc
Q 012367 191 KPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN 270 (465)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~ 270 (465)
......+++|. -..+++...|.||+|.|.|+.| +.+.++|||.|.+|+|||++++++...++.....+...
T Consensus 213 GlrDnTikiWD-------~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhl 283 (499)
T KOG0281|consen 213 GLRDNTIKIWD-------KNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHL 283 (499)
T ss_pred ccccCceEEec-------cccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEE
Confidence 34455566663 4566788999999999999999 45699999999999999999998877666554443322
Q ss_pred cCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe-cCC
Q 012367 271 AKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHH 349 (465)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~ 349 (465)
.......+.......+.++.....- .....+.+.||...|+.+.|+. .+++++|.|.||++|++.++.+++++ +|.
T Consensus 284 rf~ng~mvtcSkDrsiaVWdm~sps--~it~rrVLvGHrAaVNvVdfd~-kyIVsASgDRTikvW~~st~efvRtl~gHk 360 (499)
T KOG0281|consen 284 RFSNGYMVTCSKDRSIAVWDMASPT--DITLRRVLVGHRAAVNVVDFDD-KYIVSASGDRTIKVWSTSTCEFVRTLNGHK 360 (499)
T ss_pred EEeCCEEEEecCCceeEEEeccCch--HHHHHHHHhhhhhheeeecccc-ceEEEecCCceEEEEeccceeeehhhhccc
Confidence 2222222222222222222111100 1234566889999999999875 49999999999999999999999999 588
Q ss_pred CceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367 350 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 428 (465)
Q Consensus 350 ~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~ 428 (465)
..|.|+++ .++++++||.|.+||+||+..|.++. +.+|.+-|.++.|. .+.+++|..||+|++||+..+.-+..
T Consensus 361 RGIAClQY---r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra 435 (499)
T KOG0281|consen 361 RGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRA 435 (499)
T ss_pred ccceehhc---cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcc
Confidence 99999999 78999999999999999999998887 78999999999995 67899999999999999987654411
Q ss_pred ---EeeecCcccccCCceeeEEEe-----ecCCccceeeee
Q 012367 429 ---KVDFHDRKKTSGNKITGIQGR-----ISKNYDNFRRFQ 461 (465)
Q Consensus 429 ---~~~~~~~~~~~~~~It~~~f~-----p~gs~d~~~~~~ 461 (465)
.+.+.. ...+.+++-++||- .+...|++.+|+
T Consensus 436 ~~~~~Cl~~-lv~hsgRVFrLQFD~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 436 PASTLCLRT-LVEHSGRVFRLQFDEFQIISSSHDDTILIWD 475 (499)
T ss_pred cccchHHHh-hhhccceeEEEeecceEEEeccCCCeEEEEE
Confidence 222221 22244567777654 445556677775
No 16
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=3.8e-25 Score=201.04 Aligned_cols=197 Identities=27% Similarity=0.479 Sum_probs=169.1
Q ss_pred hhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (465)
Q Consensus 215 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (465)
...+.+|++.|++++|+|+|.+|||||.|..|.+|++...
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd---------------------------------------- 79 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD---------------------------------------- 79 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc----------------------------------------
Confidence 4567799999999999999999999999999999997642
Q ss_pred eeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCCC
Q 012367 295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG 372 (465)
Q Consensus 295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg 372 (465)
.+....+.+|.+.|..+.|.+++ .+++++.|++|+.||+++|++++.++ |...|+.++-+.....++.||+.|+
T Consensus 80 ----ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~ 155 (338)
T KOG0265|consen 80 ----CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDG 155 (338)
T ss_pred ----ccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCc
Confidence 12344566999999999999875 99999999999999999999999995 8888998886554567888999999
Q ss_pred cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC
Q 012367 373 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK 452 (465)
Q Consensus 373 ~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g 452 (465)
++++||+++...+........+++++|..++..+.+|+-|+.|++||++.+...+ .+.+ +...||++..+|.|
T Consensus 156 t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~---~lsG----h~DtIt~lsls~~g 228 (338)
T KOG0265|consen 156 TLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLY---TLSG----HADTITGLSLSRYG 228 (338)
T ss_pred eEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceE---Eeec----ccCceeeEEeccCC
Confidence 9999999999988888888899999999999999999999999999998776533 2222 55799999999998
Q ss_pred Cc------cc-eeeeec
Q 012367 453 NY------DN-FRRFQT 462 (465)
Q Consensus 453 s~------d~-~~~~~~ 462 (465)
.| |+ +++|+.
T Consensus 229 s~llsnsMd~tvrvwd~ 245 (338)
T KOG0265|consen 229 SFLLSNSMDNTVRVWDV 245 (338)
T ss_pred CccccccccceEEEEEe
Confidence 77 33 688874
No 17
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=6.8e-25 Score=225.14 Aligned_cols=204 Identities=26% Similarity=0.446 Sum_probs=165.5
Q ss_pred chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (465)
Q Consensus 214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (465)
..+++.+|...|++++|+|+|+++++|+.|++|+|||+...
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~--------------------------------------- 235 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD--------------------------------------- 235 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC---------------------------------------
Confidence 45667899999999999999999999999999999999431
Q ss_pred eeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCC
Q 012367 294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID 371 (465)
Q Consensus 294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~D 371 (465)
...++++.||...|++++|+|.+ ++++|+.|++|+|||+++++++..+ .|.+.|++++|++ ++++|++++.|
T Consensus 236 -----~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d 309 (456)
T KOG0266|consen 236 -----GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-DGNLLVSASYD 309 (456)
T ss_pred -----CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC-CCCEEEEcCCC
Confidence 23467888999999999999976 9999999999999999999999999 5999999999999 99999999999
Q ss_pred CcEEEEeCCCCeE--E-ecccCCC--CeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCc--ccccCCcee
Q 012367 372 GKVRIWGVCEKRV--V-DWADVRD--VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR--KKTSGNKIT 444 (465)
Q Consensus 372 g~I~iwd~~~~~~--~-~~~~~~~--~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~It 444 (465)
+.|+|||+.++.. . ...++.. .+++++|+|+++++++++.|+.+++||+............... ........+
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLST 389 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccC
Confidence 9999999999983 3 3444444 5999999999999999999999999999977665442222221 111222234
Q ss_pred eEEEeecCCccc-eeeeec
Q 012367 445 GIQGRISKNYDN-FRRFQT 462 (465)
Q Consensus 445 ~~~f~p~gs~d~-~~~~~~ 462 (465)
+-.+..+|..|. +.+|+.
T Consensus 390 ~~~~i~sg~~d~~v~~~~~ 408 (456)
T KOG0266|consen 390 GGKLIYSGSEDGSVYVWDS 408 (456)
T ss_pred CCCeEEEEeCCceEEEEeC
Confidence 445556666665 455543
No 18
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=1.5e-24 Score=222.61 Aligned_cols=201 Identities=35% Similarity=0.590 Sum_probs=168.7
Q ss_pred hhhhccC-CCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367 215 SQEIQAH-KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (465)
Q Consensus 215 ~~~l~~H-~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (465)
.+.+.+| ...|.++.|+++|++|++++.|+.+++|+......
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~------------------------------------- 193 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS------------------------------------- 193 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-------------------------------------
Confidence 4555555 88999999999999999999999999999854321
Q ss_pred eeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeC-CCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeC
Q 012367 294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV-GCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSI 370 (465)
Q Consensus 294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~-~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~ 370 (465)
...+.+.+|...|.+++|+|++ ++++++.|++|+|||+ ..+.+++++ +|..+|++++|+| .++++++|+.
T Consensus 194 ------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~ 266 (456)
T KOG0266|consen 194 ------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSD 266 (456)
T ss_pred ------hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecC
Confidence 1344557899999999999987 9999999999999999 556888998 6999999999999 7799999999
Q ss_pred CCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee-eeEeeecCcccccCCceeeEEE
Q 012367 371 DGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQG 448 (465)
Q Consensus 371 Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~It~~~f 448 (465)
|++|+|||++++++.. +.+|.+.|++++|+++|..|++++.||.|++||+.++... ...+... .... .++.++|
T Consensus 267 D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~---~~~~-~~~~~~f 342 (456)
T KOG0266|consen 267 DGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGA---ENSA-PVTSVQF 342 (456)
T ss_pred CCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCC---CCCC-ceeEEEE
Confidence 9999999999987775 8889999999999999999999999999999999998764 2222111 1223 7999999
Q ss_pred eecCCc------c-ceeeeecC
Q 012367 449 RISKNY------D-NFRRFQTP 463 (465)
Q Consensus 449 ~p~gs~------d-~~~~~~~p 463 (465)
+|++.| | ..++|+..
T Consensus 343 sp~~~~ll~~~~d~~~~~w~l~ 364 (456)
T KOG0266|consen 343 SPNGKYLLSASLDRTLKLWDLR 364 (456)
T ss_pred CCCCcEEEEecCCCeEEEEEcc
Confidence 999876 4 36776643
No 19
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=2.4e-24 Score=216.20 Aligned_cols=185 Identities=25% Similarity=0.475 Sum_probs=164.8
Q ss_pred hhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (465)
Q Consensus 217 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (465)
..+||...|+|++++|||+++|||++||+|+|||...+
T Consensus 345 KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg------------------------------------------ 382 (893)
T KOG0291|consen 345 KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG------------------------------------------ 382 (893)
T ss_pred eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc------------------------------------------
Confidence 44799999999999999999999999999999999874
Q ss_pred ecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEecCCC--ceEEEEEccCCCCEEEEEeCCC-
Q 012367 297 IEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHHN--YVTCVQFNPIDDNYFISGSIDG- 372 (465)
Q Consensus 297 ~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~--~V~~i~fsp~~~~~l~sgs~Dg- 372 (465)
-++.+|..|+..|+.+.|+.. +.++++|.||+|+.||+...++.++|..+. ...|++..| .|.++..|+.|.
T Consensus 383 ---fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F 458 (893)
T KOG0291|consen 383 ---FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSF 458 (893)
T ss_pred ---eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceE
Confidence 346788899999999999975 589999999999999999999999997555 457888988 899999999887
Q ss_pred cEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec
Q 012367 373 KVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS 451 (465)
Q Consensus 373 ~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~ 451 (465)
.|.||++.+|+++. +.+|.++|.+++|+|+|..|++|+.|.+|++||+-...-+.+.+.... .++++.|+|+
T Consensus 459 ~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~s-------dvl~vsfrPd 531 (893)
T KOG0291|consen 459 EIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRS-------DVLAVSFRPD 531 (893)
T ss_pred EEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeecc-------ceeEEEEcCC
Confidence 49999999999997 889999999999999999999999999999999988766666665443 6899999999
Q ss_pred CCc
Q 012367 452 KNY 454 (465)
Q Consensus 452 gs~ 454 (465)
|.-
T Consensus 532 G~e 534 (893)
T KOG0291|consen 532 GKE 534 (893)
T ss_pred CCe
Confidence 754
No 20
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.93 E-value=8.8e-25 Score=204.16 Aligned_cols=248 Identities=19% Similarity=0.318 Sum_probs=181.9
Q ss_pred CCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccc
Q 012367 190 EKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS 269 (465)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~ 269 (465)
+....+.+..|+.+......... +.-+||+++|-+|+..++|..++|||.|.+|+||+........ ......
T Consensus 164 sas~Dqtl~Lw~~~~~~~~~~~~---~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~-~E~~s~---- 235 (423)
T KOG0313|consen 164 SASMDQTLRLWKWNVGENKVKAL---KVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDE-LESSSN---- 235 (423)
T ss_pred EecCCceEEEEEecCchhhhhHH---hHhcccccceeEEEecCCCCeEEeecccceeeecccCCCcccc-ccccch----
Confidence 34455555555555444333333 4445999999999999999999999999999999944321110 000000
Q ss_pred ccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCC
Q 012367 270 NAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHH 349 (465)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~ 349 (465)
....... ..--.....|+..+.||..+|.++.|++...++++|.|.+|+.||+.++.++..+..+
T Consensus 236 --~rrk~~~-------------~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ 300 (423)
T KOG0313|consen 236 --RRRKKQK-------------REKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTN 300 (423)
T ss_pred --hhhhhhh-------------hhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecC
Confidence 0000000 0000113468889999999999999999889999999999999999999999999999
Q ss_pred CceEEEEEccCCCCEEEEEeCCCcEEEEeCCCC--eEE--ecccCCCCeEEEEEeeCC-CEEEEEEcCCcEEEEEecCCc
Q 012367 350 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK--RVV--DWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGND 424 (465)
Q Consensus 350 ~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~--~~~--~~~~~~~~V~sv~~spdg-~~l~sgs~dG~v~iwd~~~~~ 424 (465)
...+|+.++| ..++|++|+.|..||+||.+++ .++ .+.+|.+.|.++.|+|.. .+|++|+.||++++||+++.+
T Consensus 301 ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 301 KSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred cceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 9999999999 9999999999999999999874 344 488999999999999955 578999999999999999998
Q ss_pred eeeeEeeecCcccccCCceeeEEEeecCCccceeeee
Q 012367 425 LKLEKVDFHDRKKTSGNKITGIQGRISKNYDNFRRFQ 461 (465)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~It~~~f~p~gs~d~~~~~~ 461 (465)
-++..+..|+.+.-+...-.+.-+...|...+++++.
T Consensus 380 ~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 380 APLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFK 416 (423)
T ss_pred CcceeeccCCceEEEEeccCCceEEeccCcceEEEec
Confidence 8888777776443333333333333334444566655
No 21
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.92 E-value=2.6e-25 Score=209.29 Aligned_cols=212 Identities=22% Similarity=0.425 Sum_probs=172.8
Q ss_pred CCCcchhhHHhhccccccccccccchhhhccCC-CcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcc
Q 012367 190 EKPKANKMEVKQNKKKCMEFTALYTSQEIQAHK-GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFG 268 (465)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~ 268 (465)
+.+....+|.|+. .+...+.+++|. ..|++++|||+...++|+|.||+|+|||....
T Consensus 155 SgD~gG~iKyWqp--------nmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~-------------- 212 (464)
T KOG0284|consen 155 SGDKGGMIKYWQP--------NMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP-------------- 212 (464)
T ss_pred EcCCCceEEeccc--------chhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC--------------
Confidence 3455667777753 344556667766 99999999999999999999999999998752
Q ss_pred cccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEe-
Q 012367 269 SNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF- 346 (465)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~- 346 (465)
++...+.||.-.|.+++|+|. ++++++|.|..|++||.+++.|+.++
T Consensus 213 -------------------------------kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh 261 (464)
T KOG0284|consen 213 -------------------------------KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH 261 (464)
T ss_pred -------------------------------chhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhh
Confidence 345566899999999999996 69999999999999999999999998
Q ss_pred cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCC-CeEEecccCCCCeEEEEEee-CCCEEEEEEcCCcEEEEEecCCc
Q 012367 347 DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGND 424 (465)
Q Consensus 347 ~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~-~~~~~~~~~~~~V~sv~~sp-dg~~l~sgs~dG~v~iwd~~~~~ 424 (465)
.|+..|..+.|+| ++++|+|+|.|..++++|+++ .++..+.+|...|+++.|+| ...+|.+|+.||.|..|.+...+
T Consensus 262 ~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~ 340 (464)
T KOG0284|consen 262 GHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE 340 (464)
T ss_pred hccceEEEEEEcC-CCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccc
Confidence 5999999999999 889999999999999999995 45566889999999999999 45688899999999999988332
Q ss_pred eeeeEeeecCcccccCCceeeEEEeec------CCccc-eeeee
Q 012367 425 LKLEKVDFHDRKKTSGNKITGIQGRIS------KNYDN-FRRFQ 461 (465)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~It~~~f~p~------gs~d~-~~~~~ 461 (465)
.. ..+ .-.+...|.++++.|- |+-|. +++|.
T Consensus 341 p~-~~i-----~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 341 PL-GEI-----PPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred cc-cCC-----CcccccceeeeeccccceeEeecCCCcceeeec
Confidence 22 111 1224578999988886 45565 45554
No 22
>PTZ00421 coronin; Provisional
Probab=99.92 E-value=1.8e-23 Score=214.51 Aligned_cols=173 Identities=20% Similarity=0.296 Sum_probs=144.3
Q ss_pred hhccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367 217 EIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (465)
Q Consensus 217 ~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (465)
.+.+|.+.|++++|+| ++++||||+.||+|+|||+.+......
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~------------------------------------ 113 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN------------------------------------ 113 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc------------------------------------
Confidence 4679999999999999 889999999999999999975321000
Q ss_pred eecCCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCCC
Q 012367 296 QIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG 372 (465)
Q Consensus 296 ~~~~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg 372 (465)
...++..+.+|...|.+++|+|+ ++|++++.|++|+|||+.+++.+..+. |...|.+++|+| ++++|++|+.|+
T Consensus 114 --~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg 190 (493)
T PTZ00421 114 --ISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDK 190 (493)
T ss_pred --cCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC-CCCEEEEecCCC
Confidence 01356778899999999999985 489999999999999999999888884 889999999999 999999999999
Q ss_pred cEEEEeCCCCeEEe-cccCCCC-eEEEEEeeCCCEEEEEE----cCCcEEEEEecCCceeee
Q 012367 373 KVRIWGVCEKRVVD-WADVRDV-ISAICYIPDGKGFIVGS----ITGTCHFYKASGNDLKLE 428 (465)
Q Consensus 373 ~I~iwd~~~~~~~~-~~~~~~~-V~sv~~spdg~~l~sgs----~dG~v~iwd~~~~~~~~~ 428 (465)
+|+|||+++++.+. +.+|... +..+.|.|++..+++++ .|+.|++||++....++.
T Consensus 191 ~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~ 252 (493)
T PTZ00421 191 KLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS 252 (493)
T ss_pred EEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee
Confidence 99999999887664 5566654 45678999888877654 479999999987654443
No 23
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=2.1e-23 Score=215.29 Aligned_cols=211 Identities=18% Similarity=0.289 Sum_probs=158.5
Q ss_pred chhhhccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367 214 TSQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (465)
Q Consensus 214 ~~~~l~~H~~~I~~l~fspd-g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (465)
....+.+|.++|++++|+|+ +.+||||+.||+|+|||+.+......
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~--------------------------------- 112 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK--------------------------------- 112 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc---------------------------------
Confidence 34567899999999999997 78999999999999999975321000
Q ss_pred ceeeecCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeC
Q 012367 293 EVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI 370 (465)
Q Consensus 293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~ 370 (465)
....++..+.+|...|.+++|+|++ .|++++.|++|+|||+++++.+..+.|...|.+++|+| ++.+|++++.
T Consensus 113 ----~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~Slswsp-dG~lLat~s~ 187 (568)
T PTZ00420 113 ----EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNI-KGNLLSGTCV 187 (568)
T ss_pred ----ccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECC-CCCEEEEEec
Confidence 0012455677899999999999975 56799999999999999999888888888999999999 9999999999
Q ss_pred CCcEEEEeCCCCeEEe-cccCCCCeEEE-----EEeeCCCEEEEEEcCC----cEEEEEecCCceeeeEeeecCccc---
Q 012367 371 DGKVRIWGVCEKRVVD-WADVRDVISAI-----CYIPDGKGFIVGSITG----TCHFYKASGNDLKLEKVDFHDRKK--- 437 (465)
Q Consensus 371 Dg~I~iwd~~~~~~~~-~~~~~~~V~sv-----~~spdg~~l~sgs~dG----~v~iwd~~~~~~~~~~~~~~~~~~--- 437 (465)
|+.|+|||++++..+. +.+|.+.+.+. .|++++.+|++++.++ .|+|||++....++..+.++....
T Consensus 188 D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~ 267 (568)
T PTZ00420 188 GKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLI 267 (568)
T ss_pred CCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceE
Confidence 9999999999987765 66777665433 3458989999988774 799999996444444433333110
Q ss_pred ccCCceeeEEEeecCCccceeeeec
Q 012367 438 TSGNKITGIQGRISKNYDNFRRFQT 462 (465)
Q Consensus 438 ~~~~~It~~~f~p~gs~d~~~~~~~ 462 (465)
.....-+++.|.......++++|..
T Consensus 268 p~~D~~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 268 PHYDESTGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred EeeeCCCCCEEEEEECCCeEEEEEc
Confidence 0111223455555555566888875
No 24
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.92 E-value=4.7e-24 Score=204.12 Aligned_cols=163 Identities=27% Similarity=0.542 Sum_probs=151.0
Q ss_pred cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (465)
Q Consensus 213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (465)
.+..++.||.++|.+|.|+|.|.+|+|+|.|++++||+....
T Consensus 350 ~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-------------------------------------- 391 (524)
T KOG0273|consen 350 RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS-------------------------------------- 391 (524)
T ss_pred CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC--------------------------------------
Confidence 456788899999999999999999999999999999998753
Q ss_pred ceeeecCCcceeeeccccceEEEEecCCC----------EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCC
Q 012367 293 EVFQIEESPLQELHGHKGDVLDLAWSNSN----------YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPID 361 (465)
Q Consensus 293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~----------~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~ 361 (465)
...+.+++|...|..+.|+|.+ .+++++.|.+|++||+..+.++..| +|..+|++++|+| +
T Consensus 392 -------~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~ 463 (524)
T KOG0273|consen 392 -------NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-N 463 (524)
T ss_pred -------cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-C
Confidence 3466788999999999999742 6999999999999999999999999 8999999999999 9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367 362 DNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS 421 (465)
Q Consensus 362 ~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~ 421 (465)
++|+++|+.||.|.||++++++++......+.|..++|+.+|..|.++-.||.+++.|++
T Consensus 464 g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 464 GRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999999999999999999999988888889999999999999999999999999875
No 25
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=6.6e-24 Score=186.96 Aligned_cols=183 Identities=27% Similarity=0.497 Sum_probs=160.6
Q ss_pred hhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (465)
Q Consensus 215 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (465)
.+.|..|+++|+++.|+-+|+|.+|+|.|.+|++|+...+
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg---------------------------------------- 49 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG---------------------------------------- 49 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc----------------------------------------
Confidence 3567899999999999999999999999999999998753
Q ss_pred eeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCC
Q 012367 295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG 372 (465)
Q Consensus 295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg 372 (465)
..++++.||...|.+++.+.++ .+++|+.|+.|.+||+.+|+.++.| +|...|+.++|+. +...+++|+.|.
T Consensus 50 -----~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~ 123 (307)
T KOG0316|consen 50 -----ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDS 123 (307)
T ss_pred -----ceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecC-cceEEEeccccc
Confidence 4578899999999999998765 8999999999999999999999999 5999999999999 999999999999
Q ss_pred cEEEEeCCCCe--EE-ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEe
Q 012367 373 KVRIWGVCEKR--VV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGR 449 (465)
Q Consensus 373 ~I~iwd~~~~~--~~-~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~ 449 (465)
++++||.++.. ++ .+....+.|.++..+ +..|++|+.||+++.||++.+++... +- +.+|+++.|+
T Consensus 124 s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sD---y~------g~pit~vs~s 192 (307)
T KOG0316|consen 124 SVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSD---YF------GHPITSVSFS 192 (307)
T ss_pred eeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehh---hc------CCcceeEEec
Confidence 99999998753 33 366678889998886 56899999999999999999877432 22 3689999999
Q ss_pred ecCCc
Q 012367 450 ISKNY 454 (465)
Q Consensus 450 p~gs~ 454 (465)
++++.
T Consensus 193 ~d~nc 197 (307)
T KOG0316|consen 193 KDGNC 197 (307)
T ss_pred CCCCE
Confidence 99876
No 26
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=8.5e-23 Score=183.41 Aligned_cols=205 Identities=25% Similarity=0.496 Sum_probs=154.1
Q ss_pred cchhhhccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEecCC-ceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec
Q 012367 213 YTSQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTS-VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 290 (465)
Q Consensus 213 ~~~~~l~~H~~~I~~l~fspd-g~~LaSgs~Dg~V~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (465)
-..+.+++|++.|+.++|+|- |..|||||.|+.||||+... ....+.......+.. ....+...+.+...+....
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkr---sVRsvAwsp~g~~La~aSF 81 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKR---SVRSVAWSPHGRYLASASF 81 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchh---eeeeeeecCCCcEEEEeec
Confidence 345788999999999999998 89999999999999999984 223333222222211 1111222112111111111
Q ss_pred CCc--eeee---cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCC---eEeEEe-cCCCceEEEEEccC
Q 012367 291 PDE--VFQI---EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN---QCLNVF-DHHNYVTCVQFNPI 360 (465)
Q Consensus 291 ~~~--~~~~---~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~---~~l~~~-~h~~~V~~i~fsp~ 360 (465)
... +|.- +.+.+..+.||...|.+++|+++| +|++|+.|+.|-||.+..+ .|+..+ .|...|..+.|+|
T Consensus 82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP- 160 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP- 160 (312)
T ss_pred cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-
Confidence 111 1111 235678899999999999999875 9999999999999999743 577777 4999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC----eEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367 361 DDNYFISGSIDGKVRIWGVCEK----RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS 421 (465)
Q Consensus 361 ~~~~l~sgs~Dg~I~iwd~~~~----~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~ 421 (465)
...+|+++|+|++|++|.-... .+..+.+|...|.+++|+|.|..|++++.|++++||...
T Consensus 161 t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 161 TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 9999999999999999987632 245688899999999999999999999999999999854
No 27
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.92 E-value=5.4e-25 Score=211.28 Aligned_cols=173 Identities=27% Similarity=0.550 Sum_probs=157.6
Q ss_pred cccccchhhhccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCcee
Q 012367 209 FTALYTSQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 287 (465)
Q Consensus 209 ~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (465)
+-+-....++.||+..|+++.|.| .+.+|++||.|+.|+||++..
T Consensus 201 ~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~---------------------------------- 246 (503)
T KOG0282|consen 201 YLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD---------------------------------- 246 (503)
T ss_pred eccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec----------------------------------
Confidence 345566788999999999999999 899999999999999999875
Q ss_pred EecCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEE
Q 012367 288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI 366 (465)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~ 366 (465)
...+++++.||..+|.+++|++++ .++|+|.|++|++||+++|+++..|.....++|+.|+|.+.+.|+
T Consensus 247 ----------~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl 316 (503)
T KOG0282|consen 247 ----------DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFL 316 (503)
T ss_pred ----------CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEE
Confidence 235688999999999999999976 899999999999999999999999999999999999995559999
Q ss_pred EEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 367 SGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 367 sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
+|+.|+.|+.||+++++++. +..|-+.|..+.|-++|+.+++.+.|++++||+.+..-.
T Consensus 317 ~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ 376 (503)
T KOG0282|consen 317 VGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP 376 (503)
T ss_pred EecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc
Confidence 99999999999999999887 666889999999999999999999999999999886533
No 28
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=9e-24 Score=196.52 Aligned_cols=177 Identities=20% Similarity=0.400 Sum_probs=157.2
Q ss_pred ccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (465)
Q Consensus 212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (465)
..+.+.+.+|.-.|.+++|-|.|.+++|++.|.+|+.|++.++.
T Consensus 183 ~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~------------------------------------ 226 (406)
T KOG0295|consen 183 FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY------------------------------------ 226 (406)
T ss_pred HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccce------------------------------------
Confidence 45677888999999999999999999999999999999999853
Q ss_pred CceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccC---------
Q 012367 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPI--------- 360 (465)
Q Consensus 292 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~--------- 360 (465)
++.++.+|...|..+..+.+| ++++|+.|.+|++|-+.+++|...+ .|..+|.|++|.|.
T Consensus 227 ---------cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~a 297 (406)
T KOG0295|consen 227 ---------CVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEA 297 (406)
T ss_pred ---------eEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhc
Confidence 467888999999999999887 7889999999999999999999998 59999999999882
Q ss_pred -----CCCEEEEEeCCCcEEEEeCCCCeEE-ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecC
Q 012367 361 -----DDNYFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD 434 (465)
Q Consensus 361 -----~~~~l~sgs~Dg~I~iwd~~~~~~~-~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~ 434 (465)
.+.++.+++.|++|++||+.++.++ ++.+|.++|..++|+|.|++|+++..|+++++||+.+.+- ...+..|.
T Consensus 298 t~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~c-mk~~~ah~ 376 (406)
T KOG0295|consen 298 TGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQC-MKTLEAHE 376 (406)
T ss_pred cCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecccee-eeccCCCc
Confidence 2359999999999999999998766 5899999999999999999999999999999999986543 33444554
No 29
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=6e-24 Score=216.23 Aligned_cols=201 Identities=21% Similarity=0.441 Sum_probs=171.4
Q ss_pred ccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEe
Q 012367 210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 289 (465)
Q Consensus 210 ~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (465)
..-.+...+..|.|+|+.|+|||++.+++|||.|-+|+||+..+.
T Consensus 39 RM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r----------------------------------- 83 (1202)
T KOG0292|consen 39 RMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR----------------------------------- 83 (1202)
T ss_pred hhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc-----------------------------------
Confidence 334456778899999999999999999999999999999999874
Q ss_pred cCCceeeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEE
Q 012367 290 IPDEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFIS 367 (465)
Q Consensus 290 ~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~s 367 (465)
+++.++.||-+.|..+.|++. .+++|+|.|.||+||+..+.+|+..+ +|+.+|.|.+|+| ....++|
T Consensus 84 ----------rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlIVS 152 (1202)
T KOG0292|consen 84 ----------RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLIVS 152 (1202)
T ss_pred ----------eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceEEE
Confidence 456778899999999999986 69999999999999999999999999 6999999999999 9999999
Q ss_pred EeCCCcEEEEeCCCCe----------------------------EEe--cccCCCCeEEEEEeeCCCEEEEEEcCCcEEE
Q 012367 368 GSIDGKVRIWGVCEKR----------------------------VVD--WADVRDVISAICYIPDGKGFIVGSITGTCHF 417 (465)
Q Consensus 368 gs~Dg~I~iwd~~~~~----------------------------~~~--~~~~~~~V~sv~~spdg~~l~sgs~dG~v~i 417 (465)
+|.|.+|||||+..-+ ++. +.+|...|+.++|+|.-..|++|+.|..|++
T Consensus 153 aSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKl 232 (1202)
T KOG0292|consen 153 ASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKL 232 (1202)
T ss_pred ecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeE
Confidence 9999999999984311 122 5678889999999999999999999999999
Q ss_pred EEecCCce-eeeEeeecCcccccCCceeeEEEeec-------CCccceeeeec
Q 012367 418 YKASGNDL-KLEKVDFHDRKKTSGNKITGIQGRIS-------KNYDNFRRFQT 462 (465)
Q Consensus 418 wd~~~~~~-~~~~~~~~~~~~~~~~~It~~~f~p~-------gs~d~~~~~~~ 462 (465)
|.++..+. .... .+.|.+.++++-|.|. +....+|+|+.
T Consensus 233 WrmnetKaWEvDt------crgH~nnVssvlfhp~q~lIlSnsEDksirVwDm 279 (1202)
T KOG0292|consen 233 WRMNETKAWEVDT------CRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM 279 (1202)
T ss_pred EEeccccceeehh------hhcccCCcceEEecCccceeEecCCCccEEEEec
Confidence 99986543 2222 3446689999999993 44445899885
No 30
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.91 E-value=1.1e-24 Score=205.05 Aligned_cols=182 Identities=23% Similarity=0.436 Sum_probs=153.6
Q ss_pred hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (465)
..+++|..+|++|.|+++|.+++||+.+|.|++|+..-
T Consensus 132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm------------------------------------------ 169 (464)
T KOG0284|consen 132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM------------------------------------------ 169 (464)
T ss_pred HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch------------------------------------------
Confidence 45689999999999999999999999999999998763
Q ss_pred eecCCcceeeeccc-cceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCC
Q 012367 296 QIEESPLQELHGHK-GDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG 372 (465)
Q Consensus 296 ~~~~~~~~~~~gh~-~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg 372 (465)
..++.+++|. ..|.+++|+|. ..+++||.|++|+|||....+.-..+ +|.-.|.|++|+| ...++++||.|.
T Consensus 170 ----nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasgskDn 244 (464)
T KOG0284|consen 170 ----NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASGSKDN 244 (464)
T ss_pred ----hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEccCCc
Confidence 2344555555 89999999984 59999999999999999988877777 5888999999999 889999999999
Q ss_pred cEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec
Q 012367 373 KVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS 451 (465)
Q Consensus 373 ~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~ 451 (465)
.|++||.+++.++. +.+|+..|.++.|+|++++|++++.|..|++||+++.+- +..... +.+.++++.++|-
T Consensus 245 lVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE-l~~~r~------Hkkdv~~~~WhP~ 317 (464)
T KOG0284|consen 245 LVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE-LFTYRG------HKKDVTSLTWHPL 317 (464)
T ss_pred eeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH-HHHhhc------chhhheeeccccc
Confidence 99999999988765 888999999999999999999999999999999994322 222222 2356666665553
No 31
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.91 E-value=1.1e-22 Score=196.98 Aligned_cols=233 Identities=20% Similarity=0.367 Sum_probs=170.4
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeE-EeccCCCCceeEecCCce--e
Q 012367 219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKI-KFGKKKSSHVPVVIPDEV--F 295 (465)
Q Consensus 219 ~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~ 295 (465)
.+|+|.|.+|+|+||++.++|+|.|.+++|||+.+..+.......... .+..+ .++. ....+.+...+.+ +
T Consensus 232 ~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v-----~dqqvG~lWq-kd~lItVSl~G~in~l 305 (603)
T KOG0318|consen 232 DAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTV-----EDQQVGCLWQ-KDHLITVSLSGTINYL 305 (603)
T ss_pred CCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCch-----hceEEEEEEe-CCeEEEEEcCcEEEEe
Confidence 389999999999999999999999999999999998776655443331 01111 1222 2222333333222 1
Q ss_pred ee-cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEE----------------------------
Q 012367 296 QI-EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV---------------------------- 345 (465)
Q Consensus 296 ~~-~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~---------------------------- 345 (465)
+. ...+++.+.||...|+++..+|++ +|+||+.||.|.-||..++.+-+.
T Consensus 306 n~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~ 385 (603)
T KOG0318|consen 306 NPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDT 385 (603)
T ss_pred cccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCe
Confidence 11 234788899999999999999986 899999999999999654321100
Q ss_pred --------------------------------------------------------------------------------
Q 012367 346 -------------------------------------------------------------------------------- 345 (465)
Q Consensus 346 -------------------------------------------------------------------------------- 345 (465)
T Consensus 386 l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dg 465 (603)
T KOG0318|consen 386 LRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDG 465 (603)
T ss_pred EEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccc
Confidence
Q ss_pred ------------------ecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe--cccCCCCeEEEEEeeCCCE
Q 012367 346 ------------------FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKG 405 (465)
Q Consensus 346 ------------------~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~--~~~~~~~V~sv~~spdg~~ 405 (465)
..|..+|++++|+| ++.||++|...++|.+||+.+.++.. |.-|+..|.+++|+|+..+
T Consensus 466 kvhvysl~g~~l~ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~ 544 (603)
T KOG0318|consen 466 KVHVYSLSGDELKEEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKL 544 (603)
T ss_pred eEEEEEecCCcccceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceE
Confidence 13667788888888 88888888888888888888776643 6669999999999999999
Q ss_pred EEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEe------ecCCccceeeeecCC
Q 012367 406 FIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGR------ISKNYDNFRRFQTPY 464 (465)
Q Consensus 406 l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~------p~gs~d~~~~~~~p~ 464 (465)
+|+|+.|-+|.||++...... +...+. |...++++.|. .+|..-++++|.+||
T Consensus 545 vATGSlDt~Viiysv~kP~~~---i~iknA---H~~gVn~v~wlde~tvvSsG~Da~iK~W~v~~ 603 (603)
T KOG0318|consen 545 VATGSLDTNVIIYSVKKPAKH---IIIKNA---HLGGVNSVAWLDESTVVSSGQDANIKVWNVTL 603 (603)
T ss_pred EEeccccceEEEEEccChhhh---eEeccc---cccCceeEEEecCceEEeccCcceeEEecccC
Confidence 999999999999999864433 332332 22337777654 347777899999875
No 32
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.91 E-value=5.2e-23 Score=182.67 Aligned_cols=196 Identities=21% Similarity=0.370 Sum_probs=164.5
Q ss_pred chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (465)
Q Consensus 214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (465)
+..++.+|++-|+++.|..+|++++|||+||++||||+....
T Consensus 75 Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~-------------------------------------- 116 (311)
T KOG0315|consen 75 PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS-------------------------------------- 116 (311)
T ss_pred ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc--------------------------------------
Confidence 567889999999999999999999999999999999998632
Q ss_pred eeeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEe--cCCCceEEEEEccCCCCEEEEEeC
Q 012367 294 VFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSI 370 (465)
Q Consensus 294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~--~h~~~V~~i~fsp~~~~~l~sgs~ 370 (465)
......|..+|+++..+|+ ..|++|..+|.|++||+....|...+ .....|.++...| +|.+++.+..
T Consensus 117 --------~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~-dgsml~a~nn 187 (311)
T KOG0315|consen 117 --------CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMP-DGSMLAAANN 187 (311)
T ss_pred --------cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcC-CCcEEEEecC
Confidence 2223357899999999996 58999999999999999998887776 3456899999999 9999999999
Q ss_pred CCcEEEEeCCCCe-------EEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee-EeeecCcccccCCc
Q 012367 371 DGKVRIWGVCEKR-------VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNK 442 (465)
Q Consensus 371 Dg~I~iwd~~~~~-------~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~ 442 (465)
.|..++|++.+.+ +..+..|...+..+.++||+++|++++.|.+|+||++++- +.++ ++..+. ..
T Consensus 188 kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~------rW 260 (311)
T KOG0315|consen 188 KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQ------RW 260 (311)
T ss_pred CccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCC------ce
Confidence 9999999997643 2237789999999999999999999999999999999987 5444 333333 57
Q ss_pred eeeEEEeecCCc------cc-eeeeecC
Q 012367 443 ITGIQGRISKNY------DN-FRRFQTP 463 (465)
Q Consensus 443 It~~~f~p~gs~------d~-~~~~~~p 463 (465)
+=+..|+.+|.| |+ .|+|+.+
T Consensus 261 vWdc~FS~dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 261 VWDCAFSADGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred EEeeeeccCccEEEecCCCCceeecccc
Confidence 888888888776 33 6777654
No 33
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.91 E-value=2.9e-23 Score=184.30 Aligned_cols=212 Identities=20% Similarity=0.381 Sum_probs=175.5
Q ss_pred CCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccc
Q 012367 191 KPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN 270 (465)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~ 270 (465)
.+.+..++.|+. ..-.+..+++...+.|+.+.+.|++++||+|+.- .||+||+.+..
T Consensus 16 A~YDhTIRfWqa-------~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~n--------------- 72 (311)
T KOG0315|consen 16 AGYDHTIRFWQA-------LTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNN--------------- 72 (311)
T ss_pred ccCcceeeeeeh-------hcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCC---------------
Confidence 344455555543 3445667887778889999999999999999874 69999998742
Q ss_pred cCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCC
Q 012367 271 AKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHH 349 (465)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~ 349 (465)
..|+.++.+|+..|..+.|..+| .++|||.||+++|||++...|.+.|.|.
T Consensus 73 ----------------------------p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~ 124 (311)
T KOG0315|consen 73 ----------------------------PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN 124 (311)
T ss_pred ----------------------------CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC
Confidence 24789999999999999999876 8999999999999999999999999999
Q ss_pred CceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe--cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceee
Q 012367 350 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL 427 (465)
Q Consensus 350 ~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~--~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~ 427 (465)
.+|+++..+| +...|++|..+|.|+|||+....... .......|.++...|||.+++.+...|+|++|++-+.....
T Consensus 125 spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s 203 (311)
T KOG0315|consen 125 SPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTAS 203 (311)
T ss_pred CCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccc
Confidence 9999999999 88899999999999999998765443 34455789999999999999999999999999998744322
Q ss_pred eEeeecCcccccCCceeeEEEeecCCcc
Q 012367 428 EKVDFHDRKKTSGNKITGIQGRISKNYD 455 (465)
Q Consensus 428 ~~~~~~~~~~~~~~~It~~~f~p~gs~d 455 (465)
.+....+.+.+...|+.+.++|++.|.
T Consensus 204 -~l~P~~k~~ah~~~il~C~lSPd~k~l 230 (311)
T KOG0315|consen 204 -ELEPVHKFQAHNGHILRCLLSPDVKYL 230 (311)
T ss_pred -cceEhhheecccceEEEEEECCCCcEE
Confidence 333333455667899999999998773
No 34
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=3.3e-23 Score=195.39 Aligned_cols=257 Identities=20% Similarity=0.343 Sum_probs=197.8
Q ss_pred hhcccCCCCccCCCchhhHHHHHHHHHHhhhccccccccccCCCCCCCCcchhhHHhhccccccccccccchhhhccCCC
Q 012367 144 VDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKG 223 (465)
Q Consensus 144 ~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~ 223 (465)
..+|..-.+....+++++++.+.++.+..++...-....-+ .+..-+....-..-.+.+..|+|+.|++
T Consensus 157 l~elskyi~p~illP~rRLehLl~qAv~~Q~d~cvyhnsld-----------svsll~Dh~c~~~qip~qt~qil~~htd 225 (519)
T KOG0293|consen 157 LDELSKYIPPNILLPKRRLEHLLEQAVKYQRDSCVYHNSLD-----------SVSLLSDHFCGRLQIPSQTWQILQDHTD 225 (519)
T ss_pred HHHHHhhCCHhhcCChHHHHHHHHHHHHHHHhHhHHhcccc-----------hhhhhhhcccCcccCCchhhhhHhhCCC
Confidence 33333333444556889999999999988865321110000 0111111111122345577799999999
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcce
Q 012367 224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 303 (465)
Q Consensus 224 ~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (465)
.||-+.||++|+|||||+.|.+..||.+..... -+..+
T Consensus 226 EVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~------------------------------------------~kl~~ 263 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH------------------------------------------FKLKK 263 (519)
T ss_pred cEEEEEEcCCCeeEeeccCCceEEEEEEecCcc------------------------------------------eeeee
Confidence 999999999999999999999999999864211 13467
Q ss_pred eeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEecCC--CceEEEEEccCCCCEEEEEeCCCcEEEEeCC
Q 012367 304 ELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 380 (465)
Q Consensus 304 ~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h~--~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~ 380 (465)
++.||..+|.-+.|+|+ .+|++|+.|..+.+||+.+|.+...+.++ ..+.+++|.| |+..+++|+.|+.|..||+.
T Consensus 264 tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlD 342 (519)
T KOG0293|consen 264 TLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLD 342 (519)
T ss_pred eeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCC
Confidence 88899999999999997 59999999999999999999999999655 7899999999 99999999999999999998
Q ss_pred CCeEEecccCC-CCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCcc----
Q 012367 381 EKRVVDWADVR-DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNYD---- 455 (465)
Q Consensus 381 ~~~~~~~~~~~-~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~d---- 455 (465)
......|.+.. ..|.+++.++||+++++.+.|..|++|+..+..-. +.++-..+|++++++-++.|-
T Consensus 343 gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr--------~lise~~~its~~iS~d~k~~LvnL 414 (519)
T KOG0293|consen 343 GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR--------GLISEEQPITSFSISKDGKLALVNL 414 (519)
T ss_pred cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhh--------ccccccCceeEEEEcCCCcEEEEEc
Confidence 88777777754 56999999999999999999999999998753221 123334689999999988773
Q ss_pred ---ceeeeec
Q 012367 456 ---NFRRFQT 462 (465)
Q Consensus 456 ---~~~~~~~ 462 (465)
.+++|+.
T Consensus 415 ~~qei~LWDl 424 (519)
T KOG0293|consen 415 QDQEIHLWDL 424 (519)
T ss_pred ccCeeEEeec
Confidence 2677764
No 35
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.3e-22 Score=195.26 Aligned_cols=222 Identities=17% Similarity=0.283 Sum_probs=174.4
Q ss_pred HHHhhhccccccccccCCCCCCCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCC-CEEEEEeCCCcEE
Q 012367 169 IISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVR 247 (465)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~V~ 247 (465)
+.+.++-..-.++..+.+..+..+..+.+++-..+. -.....+.+|+.+|..+.|+|++ ..|++|+.|++++
T Consensus 64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-------r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k 136 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-------RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVK 136 (487)
T ss_pred HHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-------HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEE
Confidence 344444333344444555555556666666554222 22347788999999999999965 4899999999999
Q ss_pred EEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCC--CEEEE
Q 012367 248 IWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS--NYLLS 325 (465)
Q Consensus 248 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~--~~l~s 325 (465)
+||+.+.. ....+.+|++.|.|.+|+|. .+++|
T Consensus 137 ~~d~s~a~---------------------------------------------v~~~l~~htDYVR~g~~~~~~~hivvt 171 (487)
T KOG0310|consen 137 YWDLSTAY---------------------------------------------VQAELSGHTDYVRCGDISPANDHIVVT 171 (487)
T ss_pred EEEcCCcE---------------------------------------------EEEEecCCcceeEeeccccCCCeEEEe
Confidence 99998742 13367799999999999985 38999
Q ss_pred EeCCCeEEEEeCCCC-eEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCC-CeEEe-cccCCCCeEEEEEeeC
Q 012367 326 CSMDKTVRMWQVGCN-QCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVVD-WADVRDVISAICYIPD 402 (465)
Q Consensus 326 ~s~DgtV~lWD~~~~-~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~-~~~~~-~~~~~~~V~sv~~spd 402 (465)
||.||+|++||++.. ..+..+.|..+|..+.|-| .|..|++++ ...|+|||+.+ ++.+. ...|...|+|+++..+
T Consensus 172 GsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lp-sgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~ 249 (487)
T KOG0310|consen 172 GSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALP-SGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASD 249 (487)
T ss_pred cCCCceEEEEEeccCCceeEEecCCCceeeEEEcC-CCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecC
Confidence 999999999999987 7888899999999999999 889999987 57899999985 45554 4449999999999999
Q ss_pred CCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC
Q 012367 403 GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK 452 (465)
Q Consensus 403 g~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g 452 (465)
+..|++|+-||.|++||+.+.+.. ..+.+.+ +|-++.++|++
T Consensus 250 ~~rLlS~sLD~~VKVfd~t~~Kvv-~s~~~~~-------pvLsiavs~dd 291 (487)
T KOG0310|consen 250 STRLLSGSLDRHVKVFDTTNYKVV-HSWKYPG-------PVLSIAVSPDD 291 (487)
T ss_pred CceEeecccccceEEEEccceEEE-Eeeeccc-------ceeeEEecCCC
Confidence 999999999999999997665442 2555554 79999999954
No 36
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.90 E-value=6.6e-23 Score=186.53 Aligned_cols=231 Identities=17% Similarity=0.257 Sum_probs=185.2
Q ss_pred ccccCCCCCCCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee
Q 012367 181 MSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKS 260 (465)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~ 260 (465)
+.++.....+...+..+-.|+--..+..+. .+++|+++|..+.|.+|++.++|+|.|.+|+.||+++++
T Consensus 55 F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~------~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~----- 123 (338)
T KOG0265|consen 55 FHPDGSCFASGGSDRAIVLWNVYGDCENFW------VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGK----- 123 (338)
T ss_pred ECCCCCeEeecCCcceEEEEecccccccee------eeccccceeEeeeeccCCCEEEEecCCceEEEEecccce-----
Confidence 355444445556666777776555555553 345999999999999999999999999999999999864
Q ss_pred ecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCC
Q 012367 261 FTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVG 338 (465)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~ 338 (465)
.++.+++|..-|+.+..+.-| ++.|++.|++++|||++
T Consensus 124 ----------------------------------------~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R 163 (338)
T KOG0265|consen 124 ----------------------------------------RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR 163 (338)
T ss_pred ----------------------------------------eeehhccccceeeecCccccCCeEEEecCCCceEEEEeec
Confidence 466677899999999854333 78899999999999999
Q ss_pred CCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEE-ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEE
Q 012367 339 CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHF 417 (465)
Q Consensus 339 ~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~-~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~i 417 (465)
+..+++++.....++++.|.. .+.-+++|+.|+.|++||++.+... .+.+|.+.|+.+..+|+|.++++-+.|.++++
T Consensus 164 ~k~~~~t~~~kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrv 242 (338)
T KOG0265|consen 164 KKEAIKTFENKYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRV 242 (338)
T ss_pred ccchhhccccceeEEEEEecc-cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEE
Confidence 999999999899999999999 8899999999999999999887665 48899999999999999999999999999999
Q ss_pred EEecCCceeee-EeeecCcccccCCceeeEEEeecCCccc-------eeeeecC
Q 012367 418 YKASGNDLKLE-KVDFHDRKKTSGNKITGIQGRISKNYDN-------FRRFQTP 463 (465)
Q Consensus 418 wd~~~~~~~~~-~~~~~~~~~~~~~~It~~~f~p~gs~d~-------~~~~~~p 463 (465)
||++.-..... ..-+.+....-.+......++|++++-+ ..+|++-
T Consensus 243 wd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~ 296 (338)
T KOG0265|consen 243 WDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTT 296 (338)
T ss_pred EEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecc
Confidence 99986555444 2223333333345667778888876644 4566654
No 37
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.6e-23 Score=204.88 Aligned_cols=174 Identities=24% Similarity=0.437 Sum_probs=155.6
Q ss_pred ccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCcee
Q 012367 208 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 287 (465)
Q Consensus 208 ~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (465)
++..+...+++.+|.+.|+||+.||...+++|+|.|-+|++||.+..
T Consensus 83 nynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~--------------------------------- 129 (794)
T KOG0276|consen 83 NYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE--------------------------------- 129 (794)
T ss_pred ecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc---------------------------------
Confidence 44455667889999999999999999999999999999999999863
Q ss_pred EecCCceeeecCCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccC-CCC
Q 012367 288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPI-DDN 363 (465)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~-~~~ 363 (465)
..+.+++.||...|.+++|+|. +.++|++-|+||+||.+.+..+..++ +|...|+|+.|-|. +..
T Consensus 130 -----------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkp 198 (794)
T KOG0276|consen 130 -----------WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKP 198 (794)
T ss_pred -----------eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcc
Confidence 2356789999999999999984 59999999999999999999998888 59999999999872 335
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 364 YFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 364 ~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
|++||+.|.+|+|||..+..++. +.+|...|..++|+|.-..+++|+.||+++||+..+-++
T Consensus 199 ylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l 261 (794)
T KOG0276|consen 199 YLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL 261 (794)
T ss_pred eEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceeh
Confidence 99999999999999999988775 888999999999999999999999999999999876554
No 38
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2e-22 Score=179.56 Aligned_cols=191 Identities=18% Similarity=0.370 Sum_probs=164.7
Q ss_pred CCCcEEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367 221 HKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (465)
Q Consensus 221 H~~~I~~l~fspdg-~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (465)
-.+.+..++|+++. +.+++++.||+++|||... ..
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~--------------------------------------------~s 94 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM--------------------------------------------PS 94 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCC--------------------------------------------CC
Confidence 46779999999964 4899999999999999553 23
Q ss_pred CcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEE
Q 012367 300 SPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRI 376 (465)
Q Consensus 300 ~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~i 376 (465)
.|++.++.|...|.++.|++- ..++++|.|++|+||+...++.+.+| +|..-|+..+|+|..++.|+++|.|+++++
T Consensus 95 ~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~l 174 (311)
T KOG0277|consen 95 KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRL 174 (311)
T ss_pred cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEE
Confidence 688999999999999999974 37888899999999999999999999 588999999999999999999999999999
Q ss_pred EeCCC-CeEEecccCCCCeEEEEEee-CCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec---
Q 012367 377 WGVCE-KRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS--- 451 (465)
Q Consensus 377 wd~~~-~~~~~~~~~~~~V~sv~~sp-dg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~--- 451 (465)
||++. ++.+.+..|...|.++.|+. +...+++|+.|+.|+.||++.-+.++..+..|+ -.|..+.|+|.
T Consensus 175 wdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~------~AVRkvk~Sph~~~ 248 (311)
T KOG0277|consen 175 WDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHG------LAVRKVKFSPHHAS 248 (311)
T ss_pred EEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCc------eEEEEEecCcchhh
Confidence 99974 55556788888999999997 567899999999999999998888776665554 68889999886
Q ss_pred ----CCccc-eeeee
Q 012367 452 ----KNYDN-FRRFQ 461 (465)
Q Consensus 452 ----gs~d~-~~~~~ 461 (465)
.+||- .|+|+
T Consensus 249 lLaSasYDmT~riw~ 263 (311)
T KOG0277|consen 249 LLASASYDMTVRIWD 263 (311)
T ss_pred HhhhccccceEEecc
Confidence 68996 56665
No 39
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.90 E-value=1.5e-21 Score=189.37 Aligned_cols=211 Identities=25% Similarity=0.377 Sum_probs=162.3
Q ss_pred ccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee-ec-CCCCcc---cccCCCe-EEeccCCC
Q 012367 210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKS-FT-DDGGFG---SNAKEGK-IKFGKKKS 283 (465)
Q Consensus 210 ~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~-~~-~~~~~~---~~~~~~~-~~~~~~~~ 283 (465)
..+.....+..|..+++-.+|||.|-|+|+|...|+|||||........+. +. ..+.+. ....... ...+....
T Consensus 47 ~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGre 126 (603)
T KOG0318|consen 47 DNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRE 126 (603)
T ss_pred CCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCcc
Confidence 344456778899999999999999999999999999999998774332221 11 111111 1111111 22222222
Q ss_pred CceeEecCCceeeecCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccC
Q 012367 284 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPI 360 (465)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~ 360 (465)
....++.++ .+..+-++.||...|++++|-|.. .++||+.|++|.+|+-.-.+....++ |+..|.|+.|+|
T Consensus 127 rfg~~F~~D-----SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysP- 200 (603)
T KOG0318|consen 127 RFGHVFLWD-----SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSP- 200 (603)
T ss_pred ceeEEEEec-----CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECC-
Confidence 233332222 345677899999999999999876 89999999999999977667667774 888999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEe-c---ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367 361 DDNYFISGSIDGKVRIWGVCEKRVVD-W---ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK 426 (465)
Q Consensus 361 ~~~~l~sgs~Dg~I~iwd~~~~~~~~-~---~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~ 426 (465)
|+.+|++.+.||+|.+||-.+++.+. + .+|.+.|.+++|+||++.+++++.|.+++|||+.++++.
T Consensus 201 DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv 270 (603)
T KOG0318|consen 201 DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLV 270 (603)
T ss_pred CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceE
Confidence 99999999999999999999988765 3 379999999999999999999999999999999876553
No 40
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.3e-21 Score=169.96 Aligned_cols=207 Identities=21% Similarity=0.386 Sum_probs=154.4
Q ss_pred hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcc-cccCCCeEEeccCCC--CceeEecC-
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFG-SNAKEGKIKFGKKKS--SHVPVVIP- 291 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~- 291 (465)
+.-+.|++.|.|.+|||+|.+||||+.|.+|++..+....+... .+.-.+. .......+.+..... ..+.....
T Consensus 83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~--g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga 160 (350)
T KOG0641|consen 83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNAT--GHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA 160 (350)
T ss_pred eeccccCccEEEEEecCccCeEEecCCCceEEEEeccccccccc--CcceeeeecCCceeeeEEecCCCcCceEEEecCC
Confidence 34457999999999999999999999999999987764322111 0000000 000111111211111 11111111
Q ss_pred --Cceeee---cCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec---C-----CCceEEEEEc
Q 012367 292 --DEVFQI---EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---H-----HNYVTCVQFN 358 (465)
Q Consensus 292 --~~~~~~---~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~---h-----~~~V~~i~fs 358 (465)
.+++.. .+++++.+.||++.|.++---++-++++|+.|++|+.||++-..|+.++. | +..|.+++..
T Consensus 161 gdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vd 240 (350)
T KOG0641|consen 161 GDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVD 240 (350)
T ss_pred CcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEEC
Confidence 122322 46788899999999999864455699999999999999999999999884 2 3579999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 359 PIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 359 p~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
| .+++|++|-.|...-+||++.++.+. +..|...|.++.|+|...++++++.|..|++-|+.+...
T Consensus 241 p-sgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla 307 (350)
T KOG0641|consen 241 P-SGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLA 307 (350)
T ss_pred C-CcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchh
Confidence 9 99999999999999999999998776 888999999999999999999999999999999986543
No 41
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.89 E-value=6.2e-23 Score=205.85 Aligned_cols=185 Identities=24% Similarity=0.432 Sum_probs=160.3
Q ss_pred CCcchhhHHhhccccc-ccc-ccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcc
Q 012367 191 KPKANKMEVKQNKKKC-MEF-TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFG 268 (465)
Q Consensus 191 ~~~~~~~~~~~~~~~~-~~~-~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~ 268 (465)
.+.+..+++|+..+.. ..+ ..+.+..+-.+|...|+|++++|+.+++||||.|.+.+||+++..
T Consensus 430 vS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~-------------- 495 (775)
T KOG0319|consen 430 VSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL-------------- 495 (775)
T ss_pred ecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc--------------
Confidence 3456677777766521 122 223344456799999999999999999999999999999999853
Q ss_pred cccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEec
Q 012367 269 SNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFD 347 (465)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~ 347 (465)
....++.||+..|.|+.|+|. ..++|+|.|+||+||.+.+..|+++|.
T Consensus 496 -------------------------------~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~e 544 (775)
T KOG0319|consen 496 -------------------------------RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFE 544 (775)
T ss_pred -------------------------------eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeec
Confidence 346778899999999999984 689999999999999999999999995
Q ss_pred -CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367 348 -HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS 421 (465)
Q Consensus 348 -h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~ 421 (465)
|...|..+.|-. ++..|+|++.||.|++|++.++.+.. +..|.+.|++++-+|.+.++++|+.||.|.+|.=.
T Consensus 545 GH~~aVlra~F~~-~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 545 GHTSAVLRASFIR-NGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred CccceeEeeeeee-CCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecC
Confidence 999999999999 99999999999999999999988775 88899999999999999999999999999999643
No 42
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.89 E-value=2.5e-21 Score=212.58 Aligned_cols=239 Identities=17% Similarity=0.272 Sum_probs=166.6
Q ss_pred hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec-CCCCcccccCCCeEEeccCCCCceeEecCC--
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFT-DDGGFGSNAKEGKIKFGKKKSSHVPVVIPD-- 292 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 292 (465)
..+.+|.+.|++++|+|+|++|||||.|++|+||++........... +............+.+.............+
T Consensus 477 ~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 477 GDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred ccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCe
Confidence 45667999999999999999999999999999999764211000000 000000000011111111111111111111
Q ss_pred -ceeeec-CCcceeeeccccceEEEEecC-C-CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEE
Q 012367 293 -EVFQIE-ESPLQELHGHKGDVLDLAWSN-S-NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG 368 (465)
Q Consensus 293 -~~~~~~-~~~~~~~~gh~~~V~~l~~s~-~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sg 368 (465)
.+|++. .+.+..+.+|.+.|++++|+| + .+|+||+.|++|++||+.++.++..+.+...|.++.|++.++.+|++|
T Consensus 557 v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 557 VQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEE
Confidence 234443 456677889999999999996 4 489999999999999999999999888778899999976589999999
Q ss_pred eCCCcEEEEeCCCCe--EEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce-----eeeEeeecCcccccCC
Q 012367 369 SIDGKVRIWGVCEKR--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL-----KLEKVDFHDRKKTSGN 441 (465)
Q Consensus 369 s~Dg~I~iwd~~~~~--~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~ 441 (465)
+.|+.|++||+++.. ...+.+|...|++++|. ++..|++++.||+|++||+..... .+..+.. +..
T Consensus 637 s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g------h~~ 709 (793)
T PLN00181 637 SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMG------HTN 709 (793)
T ss_pred eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcC------CCC
Confidence 999999999998754 34577899999999997 788999999999999999975321 1222222 335
Q ss_pred ceeeEEEeecCC------ccc-eeeee
Q 012367 442 KITGIQGRISKN------YDN-FRRFQ 461 (465)
Q Consensus 442 ~It~~~f~p~gs------~d~-~~~~~ 461 (465)
.+..+.|+|++. .|+ +.+|+
T Consensus 710 ~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 710 VKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred CeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 677777777643 344 56665
No 43
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.89 E-value=5.3e-22 Score=184.88 Aligned_cols=261 Identities=17% Similarity=0.196 Sum_probs=186.3
Q ss_pred cccCCCCCCCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeee
Q 012367 182 SEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSF 261 (465)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~ 261 (465)
.|......+.....+.-+|...... ...++.+|+..|+++.||.+|.|||||+.+|.|+||++.++...+...
T Consensus 73 ~P~~~l~aTGGgDD~AflW~~~~ge-------~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~ 145 (399)
T KOG0296|consen 73 HPNNNLVATGGGDDLAFLWDISTGE-------FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD 145 (399)
T ss_pred CCCCceEEecCCCceEEEEEccCCc-------ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee
Confidence 4444444555666666666443332 335678999999999999999999999999999999999988777765
Q ss_pred cCCCCcccccCCC--eEEeccCCCCceeEecCCceeeecC-CcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeC
Q 012367 262 TDDGGFGSNAKEG--KIKFGKKKSSHVPVVIPDEVFQIEE-SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV 337 (465)
Q Consensus 262 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~ 337 (465)
.....+....... .+.+......... +|.+.. ...+.+.||+.++++=.|.|+| .++++..||+|++|++
T Consensus 146 ~e~~dieWl~WHp~a~illAG~~DGsvW------mw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ 219 (399)
T KOG0296|consen 146 QEVEDIEWLKWHPRAHILLAGSTDGSVW------MWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNP 219 (399)
T ss_pred cccCceEEEEecccccEEEeecCCCcEE------EEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEec
Confidence 3322222222111 1222222222111 233333 5678899999999999999986 8999999999999999
Q ss_pred CCCeEeEEecC--C--------------------------------------------------CceEEEEEccC--CCC
Q 012367 338 GCNQCLNVFDH--H--------------------------------------------------NYVTCVQFNPI--DDN 363 (465)
Q Consensus 338 ~~~~~l~~~~h--~--------------------------------------------------~~V~~i~fsp~--~~~ 363 (465)
.+++++..+.. . ..+.|+.|.|. .-.
T Consensus 220 ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lp 299 (399)
T KOG0296|consen 220 KTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLP 299 (399)
T ss_pred CCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccc
Confidence 99988766530 0 01112222221 223
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCce
Q 012367 364 YFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI 443 (465)
Q Consensus 364 ~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~I 443 (465)
++|+|+.||+|.|||+...++.....|...|+.+.|-+ ..+|++++.+|.|+.||.+++.+.. .+++ |...|
T Consensus 300 L~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~---~y~G----H~~~I 371 (399)
T KOG0296|consen 300 LAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKF---TYTG----HQMGI 371 (399)
T ss_pred hhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEE---EEec----Cchhe
Confidence 68899999999999999999999999999999999999 7799999999999999999998753 3344 44678
Q ss_pred eeEEEeecC------Cccc-eeeeecC
Q 012367 444 TGIQGRISK------NYDN-FRRFQTP 463 (465)
Q Consensus 444 t~~~f~p~g------s~d~-~~~~~~p 463 (465)
..+.++|++ +.|+ .++|..|
T Consensus 372 l~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 372 LDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 888888874 4455 4555554
No 44
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.89 E-value=5.4e-22 Score=199.39 Aligned_cols=249 Identities=20% Similarity=0.308 Sum_probs=185.5
Q ss_pred HHHHHHHHHHhhhc--ccc---ccccccCCCCCCCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCE
Q 012367 162 VKKLWKRIISMKKR--NVE---TCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRY 236 (465)
Q Consensus 162 ~~~~~k~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~ 236 (465)
+..|+...+-+++. -.. ...+++.....+...++++|+|.. ..-+|..++..|+..|+++.|+..|+.
T Consensus 334 VweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~-------~SgfC~vTFteHts~Vt~v~f~~~g~~ 406 (893)
T KOG0291|consen 334 VWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNT-------QSGFCFVTFTEHTSGVTAVQFTARGNV 406 (893)
T ss_pred EEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEec-------cCceEEEEeccCCCceEEEEEEecCCE
Confidence 56777777666544 111 122555555667778888888843 445788999999999999999999999
Q ss_pred EEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce-----eee-cCCcceeeecccc
Q 012367 237 LASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV-----FQI-EESPLQELHGHKG 310 (465)
Q Consensus 237 LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~gh~~ 310 (465)
|+++|-||+|+.||+.....-..+..+.... ...+.....+...+...... |.. .++.+-.+.||.+
T Consensus 407 llssSLDGtVRAwDlkRYrNfRTft~P~p~Q-------fscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEg 479 (893)
T KOG0291|consen 407 LLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQ-------FSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEG 479 (893)
T ss_pred EEEeecCCeEEeeeecccceeeeecCCCcee-------eeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCC
Confidence 9999999999999998765544444333221 12222222222222222222 222 3567778999999
Q ss_pred ceEEEEecCCC-EEEEEeCCCeEEEEeCCC-CeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe--
Q 012367 311 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-NQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-- 386 (465)
Q Consensus 311 ~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~-~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-- 386 (465)
+|.+++|+|.+ .|+|+|.|+|||+||+-. ...+.++.+...|..++|.| +|.-++++..||.|.+||+..+..+.
T Consensus 480 PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrP-dG~elaVaTldgqItf~d~~~~~q~~~I 558 (893)
T KOG0291|consen 480 PVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRP-DGKELAVATLDGQITFFDIKEAVQVGSI 558 (893)
T ss_pred cceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcC-CCCeEEEEEecceEEEEEhhhceeeccc
Confidence 99999999975 899999999999999854 35677888999999999999 99999999999999999996543221
Q ss_pred -------------------cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 387 -------------------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 387 -------------------~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
-.......++++|++||..+++|+....|++|++.++-+
T Consensus 559 dgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vl 616 (893)
T KOG0291|consen 559 DGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVL 616 (893)
T ss_pred cchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhhe
Confidence 111235689999999999999999999999999986554
No 45
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.89 E-value=1.6e-21 Score=174.91 Aligned_cols=186 Identities=20% Similarity=0.334 Sum_probs=162.0
Q ss_pred hhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (465)
Q Consensus 217 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (465)
.|+||..+|+.|+|+.+|.+|.|++.|.++.||--.++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG------------------------------------------ 42 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG------------------------------------------ 42 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCC------------------------------------------
Confidence 36799999999999999999999999999999976553
Q ss_pred ecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeC-----
Q 012367 297 IEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI----- 370 (465)
Q Consensus 297 ~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~----- 370 (465)
..+-++.||++.|+|++...+ ..+++|+.|.+++|||+.+|+++..+....+|..+.|++ ++++++....
T Consensus 43 ---erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~-~gn~~l~~tD~~mg~ 118 (327)
T KOG0643|consen 43 ---ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSF-GGNLILASTDKQMGY 118 (327)
T ss_pred ---ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeecc-CCcEEEEEehhhcCc
Confidence 457788999999999999865 699999999999999999999999999999999999999 8888877654
Q ss_pred CCcEEEEeCCC-------Ce-EEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCc
Q 012367 371 DGKVRIWGVCE-------KR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (465)
Q Consensus 371 Dg~I~iwd~~~-------~~-~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 442 (465)
.+.|.++|++. .. ...+..+...++.+-|.|-+++|++|..||.|.+||+++++...+....|+ ..
T Consensus 119 ~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~------~~ 192 (327)
T KOG0643|consen 119 TCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHS------SK 192 (327)
T ss_pred ceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhc------cc
Confidence 36799999973 33 445666778999999999999999999999999999999877666655555 58
Q ss_pred eeeEEEeecCCc
Q 012367 443 ITGIQGRISKNY 454 (465)
Q Consensus 443 It~~~f~p~gs~ 454 (465)
|+.+|++++.+|
T Consensus 193 Ind~q~s~d~T~ 204 (327)
T KOG0643|consen 193 INDLQFSRDRTY 204 (327)
T ss_pred cccccccCCcce
Confidence 999999998655
No 46
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.89 E-value=3.6e-22 Score=193.01 Aligned_cols=232 Identities=19% Similarity=0.289 Sum_probs=164.1
Q ss_pred cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (465)
Q Consensus 213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (465)
...-.|++|+..|.++++.|.|..|+|||.|-+|++||+.........+.....-. ....+.+.+...+....++....
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E-~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCE-THQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCccc-ccccceeeecCCCCeEEEEecCc
Confidence 33456789999999999999999999999999999999988766555443322111 11122222333333222222211
Q ss_pred --ceeeecC----------C---cceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCC-eEeEEecC------
Q 012367 293 --EVFQIEE----------S---PLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCN-QCLNVFDH------ 348 (465)
Q Consensus 293 --~~~~~~~----------~---~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~-~~l~~~~h------ 348 (465)
.+++-.+ . -+..-.||...++|-+|+|. +.++|++.||++||||+... ..+.+|.+
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 1111111 1 12345699999999999996 48999999999999999754 34455532
Q ss_pred CCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEE----ecccCCC--CeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367 349 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV----DWADVRD--VISAICYIPDGKGFIVGSITGTCHFYKASG 422 (465)
Q Consensus 349 ~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~----~~~~~~~--~V~sv~~spdg~~l~sgs~dG~v~iwd~~~ 422 (465)
.-.|+.++|+| ++.+||+|+.||.|.+|+.....+. .-..|.. .|++|+|++||++|++-+.|+++++||++.
T Consensus 317 Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq 395 (641)
T KOG0772|consen 317 RVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQ 395 (641)
T ss_pred ccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccc
Confidence 23789999999 9999999999999999998553321 2345665 899999999999999999999999999998
Q ss_pred Cceeee-EeeecCcccccCCceeeEEEeec
Q 012367 423 NDLKLE-KVDFHDRKKTSGNKITGIQGRIS 451 (465)
Q Consensus 423 ~~~~~~-~~~~~~~~~~~~~~It~~~f~p~ 451 (465)
.+.++. ...+.. ...-|.+.|+|+
T Consensus 396 ~kkpL~~~tgL~t-----~~~~tdc~FSPd 420 (641)
T KOG0772|consen 396 FKKPLNVRTGLPT-----PFPGTDCCFSPD 420 (641)
T ss_pred cccchhhhcCCCc-----cCCCCccccCCC
Confidence 877766 333333 245566677776
No 47
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.89 E-value=1.6e-20 Score=178.04 Aligned_cols=224 Identities=23% Similarity=0.454 Sum_probs=166.2
Q ss_pred hhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc-
Q 012367 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE- 293 (465)
Q Consensus 215 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 293 (465)
.+++++|.++|++++|+|++++|++++.||.|++|++.+.............. ..+.+.............+.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i------~~~~~~~~~~~l~~~~~~~~i 75 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPV------RDVAASADGTYLASGSSDKTI 75 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcce------eEEEECCCCCEEEEEcCCCeE
Confidence 35778999999999999999999999999999999998765433332222211 11111111111111111121
Q ss_pred -eeeecC-CcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEe
Q 012367 294 -VFQIEE-SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS 369 (465)
Q Consensus 294 -~~~~~~-~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs 369 (465)
+|++.. +.+..+.+|...|.++.|++++ ++++++.|+.|++||+.+++....+. |...|.+++|+| ++.++++++
T Consensus 76 ~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~ 154 (289)
T cd00200 76 RLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSS 154 (289)
T ss_pred EEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC-cCCEEEEEc
Confidence 233332 4667788899999999999875 66677779999999999888888885 888999999999 788999888
Q ss_pred CCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEE
Q 012367 370 IDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQG 448 (465)
Q Consensus 370 ~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f 448 (465)
.|+.|++||+++++... +..|...|.+++|+|+++.+++++.+|.+++||+...+... .+. .+...|+++.|
T Consensus 155 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~-~~~------~~~~~i~~~~~ 227 (289)
T cd00200 155 QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG-TLR------GHENGVNSVAF 227 (289)
T ss_pred CCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceec-chh------hcCCceEEEEE
Confidence 89999999998776554 56777899999999999999999999999999998754422 221 22347888888
Q ss_pred eecC
Q 012367 449 RISK 452 (465)
Q Consensus 449 ~p~g 452 (465)
+|++
T Consensus 228 ~~~~ 231 (289)
T cd00200 228 SPDG 231 (289)
T ss_pred cCCC
Confidence 8863
No 48
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.88 E-value=6.3e-22 Score=198.69 Aligned_cols=222 Identities=21% Similarity=0.376 Sum_probs=161.6
Q ss_pred ccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCcee
Q 012367 208 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 287 (465)
Q Consensus 208 ~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (465)
+.+.+++. .+.||+..|.++....+|.+|||||.|++|++|.+++............ ......+.+.....+.....
T Consensus 352 ~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~--gH~~svgava~~~~~asffv 428 (775)
T KOG0319|consen 352 TLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQAN--GHTNSVGAVAGSKLGASFFV 428 (775)
T ss_pred ecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhc--ccccccceeeecccCccEEE
Confidence 44445544 8899999999999777889999999999999999844322111111000 00011111111111111111
Q ss_pred EecCC---ceeeecC------Ccc----eeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCce
Q 012367 288 VVIPD---EVFQIEE------SPL----QELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYV 352 (465)
Q Consensus 288 ~~~~~---~~~~~~~------~~~----~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V 352 (465)
....+ ++|.+.. .+. .+...|...|++++++|+ .+++|||.|++++||++.+...+.++ +|...|
T Consensus 429 svS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGv 508 (775)
T KOG0319|consen 429 SVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGV 508 (775)
T ss_pred EecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccce
Confidence 11111 1222221 111 234579999999999986 48999999999999999999999999 699999
Q ss_pred EEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEee
Q 012367 353 TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD 431 (465)
Q Consensus 353 ~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~ 431 (465)
+|+.|+| .++.++|+|.|++|+||.+.+..++. +.+|...|..+.|-.+|+.|++++.||.+++|++.++.- ...++
T Consensus 509 w~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC-~~tlD 586 (775)
T KOG0319|consen 509 WCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNEC-EMTLD 586 (775)
T ss_pred EEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhh-hhhhh
Confidence 9999999 88999999999999999999988775 788999999999999999999999999999999997754 22455
Q ss_pred ecC
Q 012367 432 FHD 434 (465)
Q Consensus 432 ~~~ 434 (465)
.|.
T Consensus 587 ~H~ 589 (775)
T KOG0319|consen 587 AHN 589 (775)
T ss_pred hcc
Confidence 555
No 49
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=6.8e-22 Score=194.94 Aligned_cols=235 Identities=18% Similarity=0.324 Sum_probs=179.7
Q ss_pred hhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEE--eccCCCCceeEecCC
Q 012367 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIK--FGKKKSSHVPVVIPD 292 (465)
Q Consensus 215 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 292 (465)
.+++..|...|.+|.|||....++++-..|.|.|||.++..........+.++..+....... +.......+.
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~Ir----- 80 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIR----- 80 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEE-----
Confidence 456777999999999999999999999999999999998776665555554443332222111 1111112222
Q ss_pred ceeee-cCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCC-eEeEEe-cCCCceEEEEEccCCCCEEEEE
Q 012367 293 EVFQI-EESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCN-QCLNVF-DHHNYVTCVQFNPIDDNYFISG 368 (465)
Q Consensus 293 ~~~~~-~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~-~~l~~~-~h~~~V~~i~fsp~~~~~l~sg 368 (465)
+|+. ....++.|.+|.+.|.+++.+|. .+++|+|.|-+|++||...+ .|.++| +|..+|.+++|+|.|.+.|+++
T Consensus 81 -Vfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~ 159 (794)
T KOG0276|consen 81 -VFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASA 159 (794)
T ss_pred -EEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeee
Confidence 2333 24678899999999999999996 59999999999999999866 577788 6999999999999999999999
Q ss_pred eCCCcEEEEeCCCCeE-EecccCCCCeEEEEEeeCC--CEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceee
Q 012367 369 SIDGKVRIWGVCEKRV-VDWADVRDVISAICYIPDG--KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 445 (465)
Q Consensus 369 s~Dg~I~iwd~~~~~~-~~~~~~~~~V~sv~~spdg--~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~ 445 (465)
|.|++|+||.+-...+ .++.+|...|++|+|-|.| .+|++|+.|.+++|||..+..- ..++..| .+.|..
T Consensus 160 sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~C-V~TLeGH------t~Nvs~ 232 (794)
T KOG0276|consen 160 SLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSC-VQTLEGH------TNNVSF 232 (794)
T ss_pred eccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHH-HHHhhcc------cccceE
Confidence 9999999999976544 4588999999999999855 6999999999999999886433 2233323 345666
Q ss_pred EEEeec------CCcc-ceeeeec
Q 012367 446 IQGRIS------KNYD-NFRRFQT 462 (465)
Q Consensus 446 ~~f~p~------gs~d-~~~~~~~ 462 (465)
+.|+|. |+-| ++|+|..
T Consensus 233 v~fhp~lpiiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 233 VFFHPELPIIISGSEDGTVRIWNS 256 (794)
T ss_pred EEecCCCcEEEEecCCccEEEecC
Confidence 666664 6555 5788874
No 50
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.88 E-value=4.1e-23 Score=189.30 Aligned_cols=166 Identities=28% Similarity=0.509 Sum_probs=145.0
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (465)
+.+.-+-|..|||||+||+||+.||.|.|||..+++...... .
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLk-------------------------------------Y 253 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLK-------------------------------------Y 253 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhh-------------------------------------h
Confidence 567778999999999999999999999999998865421110 0
Q ss_pred CcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEec--CCCceEEEEEccCCCCEEEEEeCCCcEEE
Q 012367 300 SPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRI 376 (465)
Q Consensus 300 ~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~--h~~~V~~i~fsp~~~~~l~sgs~Dg~I~i 376 (465)
+....+--|...|.|+.|+.+ .+|++|+.||.|++|.+.+|+|++.|. |...|+|+.|+. |+..+++++.|.++||
T Consensus 254 QAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRi 332 (508)
T KOG0275|consen 254 QAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRI 332 (508)
T ss_pred hhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEE
Confidence 111223347789999999987 599999999999999999999999995 999999999999 9999999999999999
Q ss_pred EeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367 377 WGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN 423 (465)
Q Consensus 377 wd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~ 423 (465)
--+.+|+++. +.+|...|+.+.|++||..+++++.||+|++|+..+.
T Consensus 333 HGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktt 380 (508)
T KOG0275|consen 333 HGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTT 380 (508)
T ss_pred eccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcch
Confidence 9999998876 8999999999999999999999999999999998754
No 51
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.7e-21 Score=177.27 Aligned_cols=225 Identities=17% Similarity=0.276 Sum_probs=154.7
Q ss_pred hhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeee-----e--ecCCCCc
Q 012367 195 NKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCK-----S--FTDDGGF 267 (465)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~-----~--~~~~~~~ 267 (465)
+..+..+.+++...|........|++|.+.|++|+|+.||++|||++.|++|+||++........ . ......+
T Consensus 59 ~hqr~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V 138 (420)
T KOG2096|consen 59 KHQRNDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRV 138 (420)
T ss_pred cccchhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEE
Confidence 33445555666667777888899999999999999999999999999999999999876321100 0 0000001
Q ss_pred ccccCCCeEEeccCCCCceeEecCCc----eeeec---CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCC
Q 012367 268 GSNAKEGKIKFGKKKSSHVPVVIPDE----VFQIE---ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC 339 (465)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~ 339 (465)
........+.++.......++....+ .+... ...+..-.-|.-.|..+-...++ +++|++.|.+|.||+++
T Consensus 139 ~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk- 217 (420)
T KOG2096|consen 139 VFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK- 217 (420)
T ss_pred EECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-
Confidence 11111122222222222222211110 00000 01111122466667666665544 89999999999999999
Q ss_pred CeEeEEec-CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCC---CC------eEEecccCCCCeEEEEEeeCCCEEEEE
Q 012367 340 NQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC---EK------RVVDWADVRDVISAICYIPDGKGFIVG 409 (465)
Q Consensus 340 ~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~---~~------~~~~~~~~~~~V~sv~~spdg~~l~sg 409 (465)
|+.+..+. ....-+..+.+| +|+++++++..--|++|.+- .| ++..+.+|...|.++||+|+...+++.
T Consensus 218 Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtv 296 (420)
T KOG2096|consen 218 GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTV 296 (420)
T ss_pred CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEE
Confidence 88888885 334567788999 99999999999999999973 22 344588999999999999999999999
Q ss_pred EcCCcEEEEEec
Q 012367 410 SITGTCHFYKAS 421 (465)
Q Consensus 410 s~dG~v~iwd~~ 421 (465)
+.||++++||++
T Consensus 297 SkDG~wriwdtd 308 (420)
T KOG2096|consen 297 SKDGKWRIWDTD 308 (420)
T ss_pred ecCCcEEEeecc
Confidence 999999999976
No 52
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.88 E-value=2.9e-22 Score=182.85 Aligned_cols=217 Identities=21% Similarity=0.361 Sum_probs=165.5
Q ss_pred cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (465)
Q Consensus 213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (465)
+....+..|++++++.+|+|||.++||||.|..|+|.|++.......... +..+..
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~e-------------m~~~~~----------- 158 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKE-------------MISGDT----------- 158 (430)
T ss_pred cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhh-------------hccCCc-----------
Confidence 44456778999999999999999999999999999999975322110000 000000
Q ss_pred ceeeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEe---EEecCCCceEEEEEccCCCCEEEEE
Q 012367 293 EVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCL---NVFDHHNYVTCVQFNPIDDNYFISG 368 (465)
Q Consensus 293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l---~~~~h~~~V~~i~fsp~~~~~l~sg 368 (465)
...-..++++..|..+|+++.|+|. ..|++++.|++|+++|....... +.|....+|.+|.|+| .|.+++.|
T Consensus 159 ---qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefllvg 234 (430)
T KOG0640|consen 159 ---QARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFLLVG 234 (430)
T ss_pred ---ccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-CCceEEEe
Confidence 0011347889999999999999996 58999999999999999765443 4456778999999999 99999999
Q ss_pred eCCCcEEEEeCCCCeEEe----cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCcee
Q 012367 369 SIDGKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 444 (465)
Q Consensus 369 s~Dg~I~iwd~~~~~~~~----~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It 444 (465)
....++|+||+.+-++.. -.+|.+.|++|.|++.|++.++|+.||.|++||--.++-....-..|+ +..|.
T Consensus 235 TdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~-----gsevc 309 (430)
T KOG0640|consen 235 TDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHG-----GSEVC 309 (430)
T ss_pred cCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcC-----Cceee
Confidence 999999999999877654 456999999999999999999999999999999765543222222333 46777
Q ss_pred eEEEeecCCc-------cceeeeec
Q 012367 445 GIQGRISKNY-------DNFRRFQT 462 (465)
Q Consensus 445 ~~~f~p~gs~-------d~~~~~~~ 462 (465)
+..|.-+|.| ....+|..
T Consensus 310 Sa~Ftkn~kyiLsSG~DS~vkLWEi 334 (430)
T KOG0640|consen 310 SAVFTKNGKYILSSGKDSTVKLWEI 334 (430)
T ss_pred eEEEccCCeEEeecCCcceeeeeee
Confidence 7777766555 34666653
No 53
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.88 E-value=3.1e-21 Score=183.26 Aligned_cols=197 Identities=20% Similarity=0.330 Sum_probs=168.0
Q ss_pred ccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCcee
Q 012367 208 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 287 (465)
Q Consensus 208 ~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (465)
+.+.-++.++|.||+..|+.+.|+|+...+++++.|-.|+||.+....
T Consensus 247 d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-------------------------------- 294 (506)
T KOG0289|consen 247 DKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-------------------------------- 294 (506)
T ss_pred ecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc--------------------------------
Confidence 344556678889999999999999999999999999999999987532
Q ss_pred EecCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCC---CceEEEEEccCCCC
Q 012367 288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHH---NYVTCVQFNPIDDN 363 (465)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~---~~V~~i~fsp~~~~ 363 (465)
.......|..+|+.+..+|.| ||++++.|++....|++++.++....+. -.+++++|+| ||.
T Consensus 295 -------------~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgL 360 (506)
T KOG0289|consen 295 -------------EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGL 360 (506)
T ss_pred -------------CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-Cce
Confidence 123345799999999999975 9999999999999999999999888764 2589999999 999
Q ss_pred EEEEEeCCCcEEEEeCCCCeEE-ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCc
Q 012367 364 YFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (465)
Q Consensus 364 ~l~sgs~Dg~I~iwd~~~~~~~-~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 442 (465)
+|.+|..|+.|+|||+..+..+ .+.+|.+.|.+++|+.+|-+|++++.|+.|++||++..+ .+..+.+..+ ..
T Consensus 361 ifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~-n~kt~~l~~~-----~~ 434 (506)
T KOG0289|consen 361 IFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK-NFKTIQLDEK-----KE 434 (506)
T ss_pred EEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc-ccceeecccc-----cc
Confidence 9999999999999999887655 488899999999999999999999999999999998655 2334544442 36
Q ss_pred eeeEEEeecCCccc
Q 012367 443 ITGIQGRISKNYDN 456 (465)
Q Consensus 443 It~~~f~p~gs~d~ 456 (465)
+.++.|-++|+|-.
T Consensus 435 v~s~~fD~SGt~L~ 448 (506)
T KOG0289|consen 435 VNSLSFDQSGTYLG 448 (506)
T ss_pred ceeEEEcCCCCeEE
Confidence 88899999988853
No 54
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.87 E-value=1.1e-21 Score=187.56 Aligned_cols=210 Identities=19% Similarity=0.331 Sum_probs=165.9
Q ss_pred cchhhhccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367 213 YTSQEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (465)
Q Consensus 213 ~~~~~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (465)
.+.-.|.||++.=.+|+|++... +|++|+.|++|.+||+........
T Consensus 168 ~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~-------------------------------- 215 (422)
T KOG0264|consen 168 RPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDK-------------------------------- 215 (422)
T ss_pred CCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCc--------------------------------
Confidence 34457889999889999999755 899999999999999986322100
Q ss_pred CceeeecCCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCC--CeEeEEe-cCCCceEEEEEccCCCCEEE
Q 012367 292 DEVFQIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGC--NQCLNVF-DHHNYVTCVQFNPIDDNYFI 366 (465)
Q Consensus 292 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~--~~~l~~~-~h~~~V~~i~fsp~~~~~l~ 366 (465)
...+...+.+|...|.+++|++- .++++++.|+.+.|||+++ .++.+.. .|...|+|++|+|.++..||
T Consensus 216 ------~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilA 289 (422)
T KOG0264|consen 216 ------VVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILA 289 (422)
T ss_pred ------cccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEE
Confidence 12456778899999999999984 5899999999999999995 3444444 59999999999999999999
Q ss_pred EEeCCCcEEEEeCCC--CeEEecccCCCCeEEEEEeeCC-CEEEEEEcCCcEEEEEecCCce----------eeeEeeec
Q 012367 367 SGSIDGKVRIWGVCE--KRVVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDL----------KLEKVDFH 433 (465)
Q Consensus 367 sgs~Dg~I~iwd~~~--~~~~~~~~~~~~V~sv~~spdg-~~l~sgs~dG~v~iwd~~~~~~----------~~~~~~~~ 433 (465)
|||.|++|++||+|+ ..+..+.+|...|..|.|+|+. ..|++++.||++.+||+..-.- +.+-+..|
T Consensus 290 T~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~H 369 (422)
T KOG0264|consen 290 TGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIH 369 (422)
T ss_pred eccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEe
Confidence 999999999999986 4566789999999999999965 5788889999999999973222 22334555
Q ss_pred CcccccCCceeeEEEeecC-------Cccc-eeeeecC
Q 012367 434 DRKKTSGNKITGIQGRISK-------NYDN-FRRFQTP 463 (465)
Q Consensus 434 ~~~~~~~~~It~~~f~p~g-------s~d~-~~~~~~p 463 (465)
+. +..+|+.+.++|.. .-|| +.+|+.+
T Consensus 370 gG---H~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 370 GG---HTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cC---cccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 53 45679999998884 3355 4666543
No 55
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=6.4e-22 Score=176.27 Aligned_cols=201 Identities=20% Similarity=0.414 Sum_probs=161.0
Q ss_pred ccchhhhccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec
Q 012367 212 LYTSQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 290 (465)
Q Consensus 212 ~~~~~~l~~H~~~I~~l~fspd-g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (465)
..+.+.++.|+..|.++.|++. ++.++++|.||+|++|+....
T Consensus 94 s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~------------------------------------ 137 (311)
T KOG0277|consen 94 SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP------------------------------------ 137 (311)
T ss_pred CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC------------------------------------
Confidence 3467889999999999999995 557888899999999998642
Q ss_pred CCceeeecCCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCC-CeEeEEecCCCceEEEEEccCCCCEEEE
Q 012367 291 PDEVFQIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGC-NQCLNVFDHHNYVTCVQFNPIDDNYFIS 367 (465)
Q Consensus 291 ~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~-~~~l~~~~h~~~V~~i~fsp~~~~~l~s 367 (465)
+.++++.||..-|...+|+|. +.++++|.|+++++||++. |+.+....|...+.|+.|+..+.+.++|
T Consensus 138 ---------~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~T 208 (311)
T KOG0277|consen 138 ---------NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLAT 208 (311)
T ss_pred ---------cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEe
Confidence 457789999999999999984 7999999999999999975 4445533588899999999989999999
Q ss_pred EeCCCcEEEEeCCCCe--EEecccCCCCeEEEEEeeCC-CEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCcee
Q 012367 368 GSIDGKVRIWGVCEKR--VVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 444 (465)
Q Consensus 368 gs~Dg~I~iwd~~~~~--~~~~~~~~~~V~sv~~spdg-~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It 444 (465)
|+.|+.||+||+++-+ +..+.+|.-.|+.|+|+|.. ..|++++.|-+++|||...+.-..+....|. -.+-
T Consensus 209 g~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~Ht------EFv~ 282 (311)
T KOG0277|consen 209 GGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHT------EFVC 282 (311)
T ss_pred cCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccc------eEEe
Confidence 9999999999998754 33578999999999999954 5889999999999999986665555554444 2344
Q ss_pred eEEEee-------cCCccceeeeecC
Q 012367 445 GIQGRI-------SKNYDNFRRFQTP 463 (465)
Q Consensus 445 ~~~f~p-------~gs~d~~~~~~~p 463 (465)
|+.+++ +-..|....++.|
T Consensus 283 g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 283 GLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccccccccCceeeecccccceeeecc
Confidence 554443 2345555544444
No 56
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.87 E-value=2e-21 Score=195.32 Aligned_cols=221 Identities=22% Similarity=0.405 Sum_probs=162.3
Q ss_pred cccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeee----eeec--CCCCcccccCCCeEEecc
Q 012367 207 MEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASC----KSFT--DDGGFGSNAKEGKIKFGK 280 (465)
Q Consensus 207 ~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~ 280 (465)
.++.......++++|.+.||.|+.+||++.++|||.|.+|++||..-..... .... ...........-.+.+.+
T Consensus 439 fdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp 518 (888)
T KOG0306|consen 439 FDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP 518 (888)
T ss_pred EEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC
Confidence 3444555667888999999999999999999999999999999975321100 0000 000000000000111111
Q ss_pred CCCCceeEecCC--ceeeec-CCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEE
Q 012367 281 KKSSHVPVVIPD--EVFQIE-ESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCV 355 (465)
Q Consensus 281 ~~~~~~~~~~~~--~~~~~~-~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i 355 (465)
.+.-.+.....+ .+|-+. -+-.-.+.||.-+|.||..+|+ .+++|||.|++|++|-+.-|.|-+.| .|.+.|+++
T Consensus 519 dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V 598 (888)
T KOG0306|consen 519 DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSV 598 (888)
T ss_pred CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEE
Confidence 111111111222 223332 2345578899999999999997 48999999999999999999998887 799999999
Q ss_pred EEccCCCCEEEEEeCCCcEEEEeCCCCe-EEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367 356 QFNPIDDNYFISGSIDGKVRIWGVCEKR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 428 (465)
Q Consensus 356 ~fsp~~~~~l~sgs~Dg~I~iwd~~~~~-~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~ 428 (465)
.|-| ...+|.++|.|+.|+-||-..-. +..+.+|...|++++.+|+|.++++++.|.+|++|......+.++
T Consensus 599 ~F~P-~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~lE 671 (888)
T KOG0306|consen 599 QFLP-KTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILILE 671 (888)
T ss_pred EEcc-cceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcceeee
Confidence 9999 99999999999999999987644 456899999999999999999999999999999999876555443
No 57
>PTZ00421 coronin; Provisional
Probab=99.87 E-value=1.1e-20 Score=193.89 Aligned_cols=191 Identities=17% Similarity=0.265 Sum_probs=147.2
Q ss_pred chhhhccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367 214 TSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (465)
Q Consensus 214 ~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (465)
+...+.+|...|.+++|+|++ ++||||+.|++|+|||+.++.
T Consensus 117 ~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~------------------------------------- 159 (493)
T PTZ00421 117 PIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK------------------------------------- 159 (493)
T ss_pred ceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe-------------------------------------
Confidence 346788999999999999986 699999999999999998642
Q ss_pred ceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCc-eEEEEEccCCCCEEEEEe
Q 012367 293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNY-VTCVQFNPIDDNYFISGS 369 (465)
Q Consensus 293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~-V~~i~fsp~~~~~l~sgs 369 (465)
.+..+.+|...|.+++|+|++ +|++++.|++|++||+++++.+..+. |.+. +..+.|.| ++..+++++
T Consensus 160 --------~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~-~~~~ivt~G 230 (493)
T PTZ00421 160 --------AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK-RKDLIITLG 230 (493)
T ss_pred --------EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC-CCCeEEEEe
Confidence 345566899999999999975 89999999999999999999888774 6553 45778888 666666654
Q ss_pred ----CCCcEEEEeCCCCe-EEecc--cCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCceeeeEeeecCcccccCC
Q 012367 370 ----IDGKVRIWGVCEKR-VVDWA--DVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGN 441 (465)
Q Consensus 370 ----~Dg~I~iwd~~~~~-~~~~~--~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 441 (465)
.|+.|++||+++.. .+... .....+....|+|+++.|++|+. ||.|++||+.++.+... ..+ ....
T Consensus 231 ~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~-~~~-----~s~~ 304 (493)
T PTZ00421 231 CSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFC-SSY-----SSVE 304 (493)
T ss_pred cCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE-eec-----cCCC
Confidence 47899999998643 33222 23445667789999999998884 99999999998765332 111 1234
Q ss_pred ceeeEEEeecCCccc
Q 012367 442 KITGIQGRISKNYDN 456 (465)
Q Consensus 442 ~It~~~f~p~gs~d~ 456 (465)
.+.++.|.|.-..|.
T Consensus 305 ~~~g~~~~pk~~~dv 319 (493)
T PTZ00421 305 PHKGLCMMPKWSLDT 319 (493)
T ss_pred CCcceEecccccccc
Confidence 677888888755553
No 58
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.87 E-value=3.3e-21 Score=179.06 Aligned_cols=223 Identities=17% Similarity=0.298 Sum_probs=174.4
Q ss_pred CCCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcc
Q 012367 189 SEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFG 268 (465)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~ 268 (465)
.+...+..+++| ++..-+...++.||...|..+++|+-..||.++++|+.|+-||++..+.+..+......+.
T Consensus 167 ~tgs~DrtikIw-------Dlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~ 239 (460)
T KOG0285|consen 167 ATGSADRTIKIW-------DLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVY 239 (460)
T ss_pred EecCCCceeEEE-------EcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeE
Confidence 344445556666 4555566678889999999999999999999999999999999998777766655544443
Q ss_pred cccCCCeEEeccCCCCceeEecCCceeeec-CCcceeeeccccceEEEEecC-CCEEEEEeCCCeEEEEeCCCCeEeEEe
Q 012367 269 SNAKEGKIKFGKKKSSHVPVVIPDEVFQIE-ESPLQELHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNVF 346 (465)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gh~~~V~~l~~s~-~~~l~s~s~DgtV~lWD~~~~~~l~~~ 346 (465)
+......+......+.... ..+|++. ...++.+.||..+|.++.+.| ++.+++||.|++|++||++.|+...++
T Consensus 240 ~L~lhPTldvl~t~grDst----~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tl 315 (460)
T KOG0285|consen 240 CLDLHPTLDVLVTGGRDST----IRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITL 315 (460)
T ss_pred EEeccccceeEEecCCcce----EEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEee
Confidence 3333322221111111111 1345553 457889999999999999987 579999999999999999999887777
Q ss_pred -cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCc
Q 012367 347 -DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 424 (465)
Q Consensus 347 -~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~ 424 (465)
.|...|.|++.+| ..+.|++++.|. |+-|++..+..+. +.+|+..|++++...|| ++++|+.+|.+.+||..++.
T Consensus 316 t~hkksvral~lhP-~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 316 THHKKSVRALCLHP-KENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGH 392 (460)
T ss_pred ecccceeeEEecCC-chhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCc
Confidence 5777999999999 999999999875 8999999887665 78899999999999887 88999999999999998764
Q ss_pred e
Q 012367 425 L 425 (465)
Q Consensus 425 ~ 425 (465)
-
T Consensus 393 n 393 (460)
T KOG0285|consen 393 N 393 (460)
T ss_pred c
Confidence 3
No 59
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.87 E-value=1.1e-20 Score=194.43 Aligned_cols=231 Identities=19% Similarity=0.356 Sum_probs=176.0
Q ss_pred hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (465)
..+.||.+.|++++|..-+.+|++|+.|.+++|||+.++.+.+........................... ..+|
T Consensus 243 ~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~t------VkVW 316 (537)
T KOG0274|consen 243 TRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNT------VKVW 316 (537)
T ss_pred eeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCce------EEEE
Confidence 3488999999999998878899999999999999999999988887655544444333333333111111 2345
Q ss_pred eec-CCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCc
Q 012367 296 QIE-ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGK 373 (465)
Q Consensus 296 ~~~-~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~ 373 (465)
++. ...++.+.+|.++|.++..+ .+++++|+.|++|++||+.+++|++.+ +|..+|+++.+.+ . .++++|+.|++
T Consensus 317 ~v~n~~~l~l~~~h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~-~-~~~~Sgs~D~~ 393 (537)
T KOG0274|consen 317 DVTNGACLNLLRGHTGPVNCVQLD-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDS-E-NRLLSGSLDTT 393 (537)
T ss_pred eccCcceEEEeccccccEEEEEec-CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecC-c-ceEEeeeeccc
Confidence 554 56677888899999999988 679999999999999999999999999 6999999999865 3 99999999999
Q ss_pred EEEEeCCCC-eEE-ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEe--
Q 012367 374 VRIWGVCEK-RVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGR-- 449 (465)
Q Consensus 374 I~iwd~~~~-~~~-~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~-- 449 (465)
|++||+++. +++ .+.+|...|..+.+ .+++|++++.||+|++||..++..... +... +...|+.+++.
T Consensus 394 IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~-~~~~-----~~~~v~~l~~~~~ 465 (537)
T KOG0274|consen 394 IKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRT-LEGR-----HVGGVSALALGKE 465 (537)
T ss_pred eEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeee-eccC-----CcccEEEeecCcc
Confidence 999999998 555 47778887866555 577999999999999999988766332 2111 22345555442
Q ss_pred ---ecCCccceeeeecC
Q 012367 450 ---ISKNYDNFRRFQTP 463 (465)
Q Consensus 450 ---p~gs~d~~~~~~~p 463 (465)
..+...++.+|+.|
T Consensus 466 ~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 466 EILCSSDDGSVKLWDLR 482 (537)
T ss_pred eEEEEecCCeeEEEecc
Confidence 23444557777765
No 60
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.86 E-value=9.6e-20 Score=172.60 Aligned_cols=224 Identities=22% Similarity=0.426 Sum_probs=166.5
Q ss_pred chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec-CC
Q 012367 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI-PD 292 (465)
Q Consensus 214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 292 (465)
....+.+|...|..+.|+|++++|++++.||.|++|++.+................ +.+... ........ .+
T Consensus 43 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~------~~~~~~-~~~~~~~~~~~ 115 (289)
T cd00200 43 LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSS------VAFSPD-GRILSSSSRDK 115 (289)
T ss_pred cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEE------EEEcCC-CCEEEEecCCC
Confidence 34566789999999999999999999999999999999875444333322211111 111111 11111111 11
Q ss_pred c--eeeec-CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEE
Q 012367 293 E--VFQIE-ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFIS 367 (465)
Q Consensus 293 ~--~~~~~-~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~s 367 (465)
. +|++. .++...+..|...|.+++|+|++ ++++++.|+.|++||+.+++.+..+. |...|.+++|+| +++.+++
T Consensus 116 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~ 194 (289)
T cd00200 116 TIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLLS 194 (289)
T ss_pred eEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECC-CcCEEEE
Confidence 1 23333 45566777899999999999965 66666669999999999888888874 677999999999 8889999
Q ss_pred EeCCCcEEEEeCCCCeEEecc-cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeE
Q 012367 368 GSIDGKVRIWGVCEKRVVDWA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 446 (465)
Q Consensus 368 gs~Dg~I~iwd~~~~~~~~~~-~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~ 446 (465)
++.|+.|++||+.+++.+... .|...+.+++|+|++.++++++.+|.+++|++.+++... .+. .+...|+++
T Consensus 195 ~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~-~~~------~~~~~i~~~ 267 (289)
T cd00200 195 SSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQ-TLS------GHTNSVTSL 267 (289)
T ss_pred ecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEE-Ecc------ccCCcEEEE
Confidence 999999999999987777644 788899999999999899988889999999998754432 222 233579999
Q ss_pred EEeecC
Q 012367 447 QGRISK 452 (465)
Q Consensus 447 ~f~p~g 452 (465)
.|+|++
T Consensus 268 ~~~~~~ 273 (289)
T cd00200 268 AWSPDG 273 (289)
T ss_pred EECCCC
Confidence 999874
No 61
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.7e-20 Score=168.77 Aligned_cols=201 Identities=19% Similarity=0.318 Sum_probs=157.9
Q ss_pred ccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (465)
Q Consensus 212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (465)
+.+..+|.||...|.|++|+++|.||||++.|+.|=||.+.....
T Consensus 95 fecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE----------------------------------- 139 (312)
T KOG0645|consen 95 FECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE----------------------------------- 139 (312)
T ss_pred eeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc-----------------------------------
Confidence 345688999999999999999999999999999999999885321
Q ss_pred CceeeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCC---CCeEeEEe-cCCCceEEEEEccCCCCEEE
Q 012367 292 DEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVG---CNQCLNVF-DHHNYVTCVQFNPIDDNYFI 366 (465)
Q Consensus 292 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~---~~~~l~~~-~h~~~V~~i~fsp~~~~~l~ 366 (465)
...+..+++|+..|..+.|+|. ++|+|+|.|.+|++|+-. .-.|..++ +|++.|++++|+| .|..++
T Consensus 140 -------fec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~-~G~rl~ 211 (312)
T KOG0645|consen 140 -------FECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN-IGSRLV 211 (312)
T ss_pred -------EEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC-CCceEE
Confidence 1345678899999999999996 699999999999999876 23578888 5888999999999 999999
Q ss_pred EEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecC-cccccCCceee
Q 012367 367 SGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD-RKKTSGNKITG 445 (465)
Q Consensus 367 sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~It~ 445 (465)
+++.|++|+||-..+. -...|...+..++|. ...|++++.|+.|++|.-...--. ..+.+-. ....+...|.+
T Consensus 212 s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~-p~~~l~~~~~~aHe~dVNs 285 (312)
T KOG0645|consen 212 SCSDDGTVSIWRLYTD---LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDE-PSWNLLAKKEGAHEVDVNS 285 (312)
T ss_pred EecCCcceEeeeeccC---cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCC-chHHHHHhhhcccccccce
Confidence 9999999999986622 123467789999998 448999999999999987742111 1222211 22335578999
Q ss_pred EEEeec-------CCccc-eeeee
Q 012367 446 IQGRIS-------KNYDN-FRRFQ 461 (465)
Q Consensus 446 ~~f~p~-------gs~d~-~~~~~ 461 (465)
+++.|. ++.|. +++|.
T Consensus 286 V~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 286 VQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred EEEcCCCCCceeecCCCceEEEEE
Confidence 999993 45555 45553
No 62
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.3e-19 Score=166.51 Aligned_cols=240 Identities=19% Similarity=0.290 Sum_probs=153.3
Q ss_pred cccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccc---cCCCeEEeccCCCCcee
Q 012367 211 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN---AKEGKIKFGKKKSSHVP 287 (465)
Q Consensus 211 ~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 287 (465)
.+.+.+.+..-.+.|++|.|+++|.+|+++++|.+++|||..++................ .....+..........
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~t- 81 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDT- 81 (311)
T ss_pred ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCc-
Confidence 344556676778899999999999999999999999999999988776665543221111 1111111111100000
Q ss_pred EecCCceee-ecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEE
Q 012367 288 VVIPDEVFQ-IEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYF 365 (465)
Q Consensus 288 ~~~~~~~~~-~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l 365 (465)
-.... ...+.++.+.||...|.+|+.+|. ..++|++.|++|++||++..+|...+..... ..++|.| .|-+|
T Consensus 82 ----IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~AfDp-~GLif 155 (311)
T KOG1446|consen 82 ----IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-PIAAFDP-EGLIF 155 (311)
T ss_pred ----eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC-cceeECC-CCcEE
Confidence 00111 145778999999999999999995 6999999999999999997666554432211 2344555 55555
Q ss_pred EEEeCCCcEEEEeC-----------------------------------------------CCCeEEe-cccCCC---Ce
Q 012367 366 ISGSIDGKVRIWGV-----------------------------------------------CEKRVVD-WADVRD---VI 394 (465)
Q Consensus 366 ~sgs~Dg~I~iwd~-----------------------------------------------~~~~~~~-~~~~~~---~V 394 (465)
|++.....|++||+ -+|.+.. +..+.. .-
T Consensus 156 A~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~ 235 (311)
T KOG1446|consen 156 ALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLP 235 (311)
T ss_pred EEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcc
Confidence 55544445555554 4443332 222211 12
Q ss_pred EEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec----CCccceeeeecC
Q 012367 395 SAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS----KNYDNFRRFQTP 463 (465)
Q Consensus 395 ~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~----gs~d~~~~~~~p 463 (465)
-..+|+||++++++|+.||+|++|++++++........ ....++.++|.|- -+-+....+++|
T Consensus 236 ~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~------~~~~~~~~~fnP~~~mf~sa~s~l~fw~p 302 (311)
T KOG1446|consen 236 LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP------NGGPVSCVRFNPRYAMFVSASSNLVFWLP 302 (311)
T ss_pred eeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC------CCCCccccccCCceeeeeecCceEEEEec
Confidence 56789999999999999999999999888765432211 2356677777775 233444444444
No 63
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=6e-21 Score=183.87 Aligned_cols=186 Identities=23% Similarity=0.400 Sum_probs=156.1
Q ss_pred chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (465)
Q Consensus 214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (465)
..+++.-.+..|.++.|-.||++||.|.+.|.|+|+|+.+.
T Consensus 60 ~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r--------------------------------------- 100 (487)
T KOG0310|consen 60 VRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR--------------------------------------- 100 (487)
T ss_pred hhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH---------------------------------------
Confidence 33445556788999999999999999999999999996541
Q ss_pred eeeecCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeC
Q 012367 294 VFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSI 370 (465)
Q Consensus 294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~ 370 (465)
..++.+.+|+.+|..+.|+|.+ .+++|+.|+.+++||+.+......+ +|.++|.|.+|+|.++..++|||+
T Consensus 101 ------~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsY 174 (487)
T KOG0310|consen 101 ------VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSY 174 (487)
T ss_pred ------HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCC
Confidence 2367788999999999999853 8889999999999999998875455 699999999999988999999999
Q ss_pred CCcEEEEeCCCC-eEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEe
Q 012367 371 DGKVRIWGVCEK-RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGR 449 (465)
Q Consensus 371 Dg~I~iwd~~~~-~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~ 449 (465)
||+||+||++.. ..+....|..+|..+.+-|.|..+++++.. .|++||+.++...+..... +.+.||++.+.
T Consensus 175 Dg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~------H~KtVTcL~l~ 247 (487)
T KOG0310|consen 175 DGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFN------HNKTVTCLRLA 247 (487)
T ss_pred CceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhc------ccceEEEEEee
Confidence 999999999986 666678899999999999999999998754 8999999966554433222 34789999887
Q ss_pred ec
Q 012367 450 IS 451 (465)
Q Consensus 450 p~ 451 (465)
-+
T Consensus 248 s~ 249 (487)
T KOG0310|consen 248 SD 249 (487)
T ss_pred cC
Confidence 64
No 64
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.86 E-value=1e-20 Score=169.80 Aligned_cols=235 Identities=16% Similarity=0.239 Sum_probs=170.6
Q ss_pred chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccccc-CCCeEE-eccC-CCCceeEec
Q 012367 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNA-KEGKIK-FGKK-KSSHVPVVI 290 (465)
Q Consensus 214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~-~~~~~~~~~ 290 (465)
..-++.||++.|||+...-+.++|+||+.|.++++||+.++++......+........ ..+.+. +... ........
T Consensus 44 rlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v- 122 (327)
T KOG0643|consen 44 RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFV- 122 (327)
T ss_pred eeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEE-
Confidence 3467889999999999999999999999999999999999988876655443221111 111111 1111 11111100
Q ss_pred CCceeee--------cCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEe--cCCCceEEEEEcc
Q 012367 291 PDEVFQI--------EESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNP 359 (465)
Q Consensus 291 ~~~~~~~--------~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~--~h~~~V~~i~fsp 359 (465)
.++.+ ...|+..+..+...++.+-|.|- ..|++|..||.|.+||++++..+..- .|...|+.++++|
T Consensus 123 --~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~ 200 (327)
T KOG0643|consen 123 --SVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSR 200 (327)
T ss_pred --EEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccC
Confidence 12222 35668888889999999999995 59999999999999999998654443 4888999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEE--EecCCceeee--Ee---ee
Q 012367 360 IDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFY--KASGNDLKLE--KV---DF 432 (465)
Q Consensus 360 ~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iw--d~~~~~~~~~--~~---~~ 432 (465)
+..+|++||.|.+-++||+.+-.++.......+|++.+++|-...++.|+...---+= +.+.++..-. .. .-
T Consensus 201 -d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEE 279 (327)
T KOG0643|consen 201 -DRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEE 279 (327)
T ss_pred -CcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHH
Confidence 9999999999999999999999999888888999999999987777776643322222 2222322211 00 01
Q ss_pred cCcccccCCceeeEEEeecC
Q 012367 433 HDRKKTSGNKITGIQGRISK 452 (465)
Q Consensus 433 ~~~~~~~~~~It~~~f~p~g 452 (465)
-++.+.+..+|.+++|+|+|
T Consensus 280 igrvkGHFGPINsvAfhPdG 299 (327)
T KOG0643|consen 280 IGRVKGHFGPINSVAFHPDG 299 (327)
T ss_pred hccccccccCcceeEECCCC
Confidence 24456688999999999985
No 65
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.86 E-value=3.5e-21 Score=181.92 Aligned_cols=244 Identities=15% Similarity=0.176 Sum_probs=152.4
Q ss_pred CCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccc
Q 012367 191 KPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN 270 (465)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~ 270 (465)
......++.|...... .....+|.|-.++|+.+.|.++++++++++.|+.+++|++...........+...+...
T Consensus 193 gg~Dr~Ik~W~v~~~k-----~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~a 267 (459)
T KOG0288|consen 193 GGSDRIIKLWNVLGEK-----SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAA 267 (459)
T ss_pred cchhhhhhhhhcccch-----hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeee
Confidence 3445566666543332 33467888999999999999999999999999999999998765443332222111111
Q ss_pred cCCCeEEeccCCCCceeEec----CCceeeecCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe
Q 012367 271 AKEGKIKFGKKKSSHVPVVI----PDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF 346 (465)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~ 346 (465)
.... .... .+.. ..+.|++.......-.-....+.+|. .....++||-.|++|+.||+++..+....
T Consensus 268 k~~~------~~~~--vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~-~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv 338 (459)
T KOG0288|consen 268 KFKL------SHSR--VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIV-CSISDVISGHFDKKVRFWDIRSADKTRSV 338 (459)
T ss_pred hhhc------cccc--eeeccccchhhhhhhhhhheeccccccccccceE-ecceeeeecccccceEEEeccCCceeeEe
Confidence 0000 0000 0000 00111111100000000001111111 01124556667777777777777777777
Q ss_pred cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEeccc-----CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367 347 DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-----VRDVISAICYIPDGKGFIVGSITGTCHFYKAS 421 (465)
Q Consensus 347 ~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-----~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~ 421 (465)
...+.|+++..++ ++.-+.+++.|.++.+.|+++..+..... .....+.++|+|++.|+++|+.||.|+||++.
T Consensus 339 ~~gg~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~ 417 (459)
T KOG0288|consen 339 PLGGRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVF 417 (459)
T ss_pred ecCcceeeEeecc-CCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEcc
Confidence 7667888888888 88888888888888888888776654211 22348899999999999999999999999999
Q ss_pred CCceeeeEeeecCcccccCCceeeEEEeecCCc
Q 012367 422 GNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY 454 (465)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~ 454 (465)
++++... ..... +...|+++.|+|.|++
T Consensus 418 tgKlE~~-l~~s~----s~~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 418 TGKLEKV-LSLST----SNAAITSLSWNPSGSG 445 (459)
T ss_pred CceEEEE-eccCC----CCcceEEEEEcCCCch
Confidence 9988543 11111 2237999999999877
No 66
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=9.8e-21 Score=173.35 Aligned_cols=216 Identities=17% Similarity=0.301 Sum_probs=160.0
Q ss_pred cccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCc---ccccCCCeEEeccCCCCc
Q 012367 209 FTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGF---GSNAKEGKIKFGKKKSSH 285 (465)
Q Consensus 209 ~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 285 (465)
+..-.|..++.||.|.|++|+|++.+.+++|++.|++-+||...-.-.......+..+. .....+.......
T Consensus 177 ~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d----- 251 (481)
T KOG0300|consen 177 LESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTD----- 251 (481)
T ss_pred eccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccc-----
Confidence 44556778899999999999999999999999999999999842111000000000000 0000000000000
Q ss_pred eeEecCCceeeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCC
Q 012367 286 VPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDN 363 (465)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~ 363 (465)
......... -..|+..+.||.+.|.+..|-.+ ..++++|.|.+..+||++++..+..+ +|....+.++-+| ..+
T Consensus 252 ~~~~sD~~t---iRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQr 327 (481)
T KOG0300|consen 252 SSEKSDGHT---IRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQR 327 (481)
T ss_pred cccccCCce---eeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cce
Confidence 000000000 12478889999999999999875 48999999999999999999999998 6888999999999 999
Q ss_pred EEEEEeCCCcEEEEeCCCC--eEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecC
Q 012367 364 YFISGSIDGKVRIWGVCEK--RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD 434 (465)
Q Consensus 364 ~l~sgs~Dg~I~iwd~~~~--~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~ 434 (465)
++++.+.|.+.|+||++.. .+..+.+|.+.|+++.|.-+. .+++|+.|.+|++||+++..-++..+....
T Consensus 328 LVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS 399 (481)
T KOG0300|consen 328 LVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDS 399 (481)
T ss_pred EEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecCC
Confidence 9999999999999999853 344589999999999999765 689999999999999998887777665443
No 67
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.86 E-value=1.4e-21 Score=179.28 Aligned_cols=218 Identities=22% Similarity=0.363 Sum_probs=166.9
Q ss_pred cccCCCCCCCCcchhhHHhhccccccccc-cccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee
Q 012367 182 SEKRKPNSEKPKANKMEVKQNKKKCMEFT-ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKS 260 (465)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~ 260 (465)
+++.....+...++-+.+|.+......-. ..+....+--|..+|.|+.||.|..+||||+.||.|+||.+.++.+
T Consensus 222 SPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~C---- 297 (508)
T KOG0275|consen 222 SPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQC---- 297 (508)
T ss_pred CCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchH----
Confidence 33333334445566667776543322111 1112233556899999999999999999999999999999998654
Q ss_pred ecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeee-ccccceEEEEecCCC-EEEEEeCCCeEEEEeCC
Q 012367 261 FTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG 338 (465)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~ 338 (465)
++.|. +|+..|+|+.|+.++ .+++++.|.+|++.-+.
T Consensus 298 -----------------------------------------lRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK 336 (508)
T KOG0275|consen 298 -----------------------------------------LRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK 336 (508)
T ss_pred -----------------------------------------HHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc
Confidence 44444 799999999999875 89999999999999999
Q ss_pred CCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-c-----------------------------
Q 012367 339 CNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-W----------------------------- 387 (465)
Q Consensus 339 ~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~----------------------------- 387 (465)
+|++++.| +|+.+|+.+.|.+ +|.++++++.||+|++|+..+..++. +
T Consensus 337 SGK~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsn 415 (508)
T KOG0275|consen 337 SGKCLKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSN 415 (508)
T ss_pred cchhHHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCC
Confidence 99999999 6999999999999 99999999999999999987643211 0
Q ss_pred -------c---------c--CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEe
Q 012367 388 -------A---------D--VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGR 449 (465)
Q Consensus 388 -------~---------~--~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~ 449 (465)
. + ..+...+.+.+|.|.++.+.+.|+.++.|.+.++++.. .+..|. +-+.|+...
T Consensus 416 tv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~-tl~VhE------kdvIGl~HH 488 (508)
T KOG0275|consen 416 TVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLER-TLPVHE------KDVIGLTHH 488 (508)
T ss_pred eEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceee-eeeccc------ccccccccC
Confidence 0 0 11224456789999999999999999999999988754 444555 467788877
Q ss_pred ecC
Q 012367 450 ISK 452 (465)
Q Consensus 450 p~g 452 (465)
|..
T Consensus 489 PHq 491 (508)
T KOG0275|consen 489 PHQ 491 (508)
T ss_pred ccc
Confidence 764
No 68
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.86 E-value=2.8e-21 Score=185.91 Aligned_cols=186 Identities=18% Similarity=0.313 Sum_probs=152.2
Q ss_pred ccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (465)
Q Consensus 212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (465)
-.+.+++.||..+|..++|+++|..++|+|.|++|++||++++.+.....
T Consensus 248 ~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~------------------------------ 297 (503)
T KOG0282|consen 248 RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH------------------------------ 297 (503)
T ss_pred cceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe------------------------------
Confidence 56779999999999999999999999999999999999999987653321
Q ss_pred CceeeecCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEE
Q 012367 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISG 368 (465)
Q Consensus 292 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sg 368 (465)
-...+.|+.|+|++ .+++|+.|+.|+.||+++++.++.+. |-+.|..|.|-+ ++++|++.
T Consensus 298 ----------------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~-~g~rFiss 360 (503)
T KOG0282|consen 298 ----------------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVD-EGRRFISS 360 (503)
T ss_pred ----------------cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEcc-CCceEeee
Confidence 12456789999864 89999999999999999999999984 778999999999 99999999
Q ss_pred eCCCcEEEEeCCCCeEEe-----------------------------------------------cccC--CCCeEEEEE
Q 012367 369 SIDGKVRIWGVCEKRVVD-----------------------------------------------WADV--RDVISAICY 399 (465)
Q Consensus 369 s~Dg~I~iwd~~~~~~~~-----------------------------------------------~~~~--~~~V~sv~~ 399 (465)
+.|+.++||+.+..-.+. +.+| .+.-..+.|
T Consensus 361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 999999999986532110 1112 123456899
Q ss_pred eeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec
Q 012367 400 IPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS 451 (465)
Q Consensus 400 spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~ 451 (465)
+|||.+|++|+.||.|.+||..+.++. ..+ +.+...++++.|.|.
T Consensus 441 SpDG~~l~SGdsdG~v~~wdwkt~kl~-~~l------kah~~~ci~v~wHP~ 485 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWDWKTTKLV-SKL------KAHDQPCIGVDWHPV 485 (503)
T ss_pred cCCCCeEEeecCCccEEEeechhhhhh-hcc------ccCCcceEEEEecCC
Confidence 999999999999999999999887652 222 233468899988886
No 69
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.85 E-value=2e-20 Score=195.55 Aligned_cols=203 Identities=26% Similarity=0.440 Sum_probs=157.5
Q ss_pred hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (465)
-++..|.++|+|+.|+|||+|||+||+|+.|.||..... .....+.. .++.-
T Consensus 63 ~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~-~~~~~fgs---------------------------~g~~~ 114 (942)
T KOG0973|consen 63 CTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEI-GSGTVFGS---------------------------TGGAK 114 (942)
T ss_pred eeeccccCceeEEEECCCCCeEeeccCcceEEEeeeccc-CCcccccc---------------------------ccccc
Confidence 345689999999999999999999999999999998741 11000000 00000
Q ss_pred ee-cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCC
Q 012367 296 QI-EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG 372 (465)
Q Consensus 296 ~~-~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg 372 (465)
.. ..+.+..+.+|.+.|.+++|+|++ +|++++.|++|.||+..+..+++.+ +|...|..+.|.| -|+||++-+.|+
T Consensus 115 ~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDr 193 (942)
T KOG0973|consen 115 NVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDR 193 (942)
T ss_pred ccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECC-ccCeeeeecCCc
Confidence 00 124677889999999999999975 9999999999999999999999998 5999999999999 999999999999
Q ss_pred cEEEEeCCCCe-----------------------------------------------------EEecccCCCCeEEEEE
Q 012367 373 KVRIWGVCEKR-----------------------------------------------------VVDWADVRDVISAICY 399 (465)
Q Consensus 373 ~I~iwd~~~~~-----------------------------------------------------~~~~~~~~~~V~sv~~ 399 (465)
+|+||.+.+-. -..+.+|..++.++.|
T Consensus 194 tikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrF 273 (942)
T KOG0973|consen 194 TLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRF 273 (942)
T ss_pred eEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEe
Confidence 99999863300 1135789999999999
Q ss_pred eeC-----CC------------EEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCC
Q 012367 400 IPD-----GK------------GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKN 453 (465)
Q Consensus 400 spd-----g~------------~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs 453 (465)
+|. .+ .+|+|+.|++|.||.....+.-+....+- ...|.+++|+|+|.
T Consensus 274 nP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf------~~SI~DmsWspdG~ 338 (942)
T KOG0973|consen 274 NPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLF------NKSIVDMSWSPDGF 338 (942)
T ss_pred ChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhh------cCceeeeeEcCCCC
Confidence 982 12 68899999999999985443322222222 36899999999973
No 70
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=4.6e-20 Score=168.22 Aligned_cols=199 Identities=25% Similarity=0.418 Sum_probs=150.9
Q ss_pred cCCCcEEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec
Q 012367 220 AHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 298 (465)
Q Consensus 220 ~H~~~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (465)
.-.+.|.+|+||| ...+++.||.||+||+|++......
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~----------------------------------------- 63 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL----------------------------------------- 63 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcc-----------------------------------------
Confidence 4578899999999 4557779999999999999862110
Q ss_pred CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCC--EEEEEeCCCcEE
Q 012367 299 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDN--YFISGSIDGKVR 375 (465)
Q Consensus 299 ~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~--~l~sgs~Dg~I~ 375 (465)
.+ +....|.++|.+++|+.++ .+++|+.|+.+++||+.+++....-.|..+|.++.|-+ ... .|+|||.|.+|+
T Consensus 64 -~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlK 140 (347)
T KOG0647|consen 64 -VP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLK 140 (347)
T ss_pred -cc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEec-CCCcceeEeccccccee
Confidence 01 3344689999999999886 89999999999999999998877778999999999987 555 899999999999
Q ss_pred EEeCCCCeEEecc------------------------------------------cCCCCeEEEEEeeCCCEEEEEEcCC
Q 012367 376 IWGVCEKRVVDWA------------------------------------------DVRDVISAICYIPDGKGFIVGSITG 413 (465)
Q Consensus 376 iwd~~~~~~~~~~------------------------------------------~~~~~V~sv~~spdg~~l~sgs~dG 413 (465)
.||.+....+... ...-.+++|+..+|....+.|+..|
T Consensus 141 fWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEG 220 (347)
T KOG0647|consen 141 FWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEG 220 (347)
T ss_pred ecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecc
Confidence 9999865422110 0123378899999999999999999
Q ss_pred cEEEEEecCCceeee-EeeecCcc--ccc-CCceeeEEEeec-------CCccceeeeec
Q 012367 414 TCHFYKASGNDLKLE-KVDFHDRK--KTS-GNKITGIQGRIS-------KNYDNFRRFQT 462 (465)
Q Consensus 414 ~v~iwd~~~~~~~~~-~~~~~~~~--~~~-~~~It~~~f~p~-------gs~d~~~~~~~ 462 (465)
.|-+..+........ .+.-|... ... ...|.++.|+|. |++.++.+|+.
T Consensus 221 rv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDk 280 (347)
T KOG0647|consen 221 RVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDK 280 (347)
T ss_pred eEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecc
Confidence 999999987543221 33323211 112 456788899885 66667777763
No 71
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2e-20 Score=179.37 Aligned_cols=184 Identities=21% Similarity=0.350 Sum_probs=156.0
Q ss_pred cccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCC
Q 012367 205 KCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS 284 (465)
Q Consensus 205 ~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (465)
...+++.-.+...+.+|-.+|+|+.|+-||.+|+|||.||.|.+|.+......
T Consensus 106 YlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a--------------------------- 158 (476)
T KOG0646|consen 106 YLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA--------------------------- 158 (476)
T ss_pred EEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc---------------------------
Confidence 34466677777888999999999999999999999999999999998642110
Q ss_pred ceeEecCCceeeecCCcceeeeccccceEEEEecCC---CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCC
Q 012367 285 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS---NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPID 361 (465)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~---~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~ 361 (465)
.... ..+|++.+..|+-+|+++...++ ..|+|+|.|.++++||+..+..+..+.....+.+++..| .
T Consensus 159 -------~~~~--~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDp-a 228 (476)
T KOG0646|consen 159 -------DNDH--SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDP-A 228 (476)
T ss_pred -------ccCC--CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcc-c
Confidence 0000 24689999999999999999865 499999999999999999999999999999999999999 9
Q ss_pred CCEEEEEeCCCcEEEEeCCCC-----------------eEEecccCCC--CeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367 362 DNYFISGSIDGKVRIWGVCEK-----------------RVVDWADVRD--VISAICYIPDGKGFIVGSITGTCHFYKASG 422 (465)
Q Consensus 362 ~~~l~sgs~Dg~I~iwd~~~~-----------------~~~~~~~~~~--~V~sv~~spdg~~l~sgs~dG~v~iwd~~~ 422 (465)
++.++.|+.+|.|.+.++..- +...+.+|.+ .|+|++++-||..|++|+.||.|+|||+.+
T Consensus 229 e~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 229 ERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred ccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence 999999999999999887321 1223677887 999999999999999999999999999976
Q ss_pred Cce
Q 012367 423 NDL 425 (465)
Q Consensus 423 ~~~ 425 (465)
.+.
T Consensus 309 ~Q~ 311 (476)
T KOG0646|consen 309 KQC 311 (476)
T ss_pred HHH
Confidence 543
No 72
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.85 E-value=2e-20 Score=167.44 Aligned_cols=163 Identities=23% Similarity=0.426 Sum_probs=140.3
Q ss_pred hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (465)
+.+++|.+.|.+|+|+.+|..||+|+.|+++++|++.....
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~--------------------------------------- 54 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF--------------------------------------- 54 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh---------------------------------------
Confidence 67889999999999999999999999999999999986311
Q ss_pred eecCCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCc
Q 012367 296 QIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK 373 (465)
Q Consensus 296 ~~~~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~ 373 (465)
..-....+|.+.|-.++|+|. ..+++++.|++|++||+++++|.........-.-+.|+| ++.+++.|+.|..
T Consensus 55 ----~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp-~g~~~~~~~kdD~ 129 (313)
T KOG1407|consen 55 ----RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSP-DGEYIAVGNKDDR 129 (313)
T ss_pred ----hhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcC-CCCEEEEecCccc
Confidence 112235689999999999974 589999999999999999999999997777667789999 9999999999999
Q ss_pred EEEEeCCCCe------------------------------------------EEecccCCCCeEEEEEeeCCCEEEEEEc
Q 012367 374 VRIWGVCEKR------------------------------------------VVDWADVRDVISAICYIPDGKGFIVGSI 411 (465)
Q Consensus 374 I~iwd~~~~~------------------------------------------~~~~~~~~~~V~sv~~spdg~~l~sgs~ 411 (465)
|.+.|.++.+ +..+..|.....||.|+|+|++|++|+.
T Consensus 130 it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA 209 (313)
T KOG1407|consen 130 ITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA 209 (313)
T ss_pred EEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc
Confidence 9999886532 1124567778889999999999999999
Q ss_pred CCcEEEEEecC
Q 012367 412 TGTCHFYKASG 422 (465)
Q Consensus 412 dG~v~iwd~~~ 422 (465)
|..|.+||+..
T Consensus 210 DAlvSLWD~~E 220 (313)
T KOG1407|consen 210 DALVSLWDVDE 220 (313)
T ss_pred cceeeccChhH
Confidence 99999999874
No 73
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.85 E-value=1.3e-19 Score=199.01 Aligned_cols=200 Identities=22% Similarity=0.408 Sum_probs=148.2
Q ss_pred cchhhhccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec-
Q 012367 213 YTSQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI- 290 (465)
Q Consensus 213 ~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 290 (465)
.....+.+|.+.|++++|+| ++.+|+||+.||+|++||+.++......... ..+. .+.+............
T Consensus 566 ~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~------~v~~~~~~g~~latgs~ 638 (793)
T PLN00181 566 QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANIC------CVQFPSESGRSLAFGSA 638 (793)
T ss_pred eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeE------EEEEeCCCCCEEEEEeC
Confidence 34456789999999999997 7889999999999999999887655443221 1111 1111111111111111
Q ss_pred CC--ceeeecC--CcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCC------eEeEEe-cCCCceEEEEEcc
Q 012367 291 PD--EVFQIEE--SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCN------QCLNVF-DHHNYVTCVQFNP 359 (465)
Q Consensus 291 ~~--~~~~~~~--~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~------~~l~~~-~h~~~V~~i~fsp 359 (465)
.+ .+|++.. .++..+.+|...|.++.|.++.+|++++.|++|++||+..+ .++..+ +|...+.+++|+|
T Consensus 639 dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~ 718 (793)
T PLN00181 639 DHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSV 718 (793)
T ss_pred CCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcC
Confidence 11 2333332 25677889999999999987789999999999999999743 566777 5888999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEe--------------cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEe
Q 012367 360 IDDNYFISGSIDGKVRIWGVCEKRVVD--------------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKA 420 (465)
Q Consensus 360 ~~~~~l~sgs~Dg~I~iwd~~~~~~~~--------------~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~ 420 (465)
++.+|++|+.|+.|++|+......+. ...+...|.+++|+|++..|++|+.+|.|+||++
T Consensus 719 -~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 719 -SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred -CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 89999999999999999986543221 1234567999999999999999999999999986
No 74
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=8.8e-20 Score=165.73 Aligned_cols=214 Identities=22% Similarity=0.347 Sum_probs=166.0
Q ss_pred ccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeee
Q 012367 219 QAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 297 (465)
Q Consensus 219 ~~H~~~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (465)
..|.|.|+++...+ .|+|+++|+.||.|.+||+++......... ......+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-------i~k~~c~--------------------- 91 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-------IAKHKCI--------------------- 91 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-------eeheeee---------------------
Confidence 46999999999988 588999999999999999986321100000 0000000
Q ss_pred cCCcceeeeccccceEEEEecC--CCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCC--CEEEEEeCCCc
Q 012367 298 EESPLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDD--NYFISGSIDGK 373 (465)
Q Consensus 298 ~~~~~~~~~gh~~~V~~l~~s~--~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~--~~l~sgs~Dg~ 373 (465)
-....-.+|.-.|.++.|-| .|++.++|.|.+++|||+.+-+..-.|...+.|++-+++|... .++++|..|-.
T Consensus 92 --v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~ 169 (397)
T KOG4283|consen 92 --VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQ 169 (397)
T ss_pred --ccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCc
Confidence 01123347999999999998 4799999999999999999999999999999999999999543 46778888889
Q ss_pred EEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCE-EEEEEcCCcEEEEEecCCceeeeEeeecCcccc--------cCCce
Q 012367 374 VRIWGVCEKRVVD-WADVRDVISAICYIPDGKG-FIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT--------SGNKI 443 (465)
Q Consensus 374 I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~-l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~--------~~~~I 443 (465)
|++-|+.+|.... +.+|.+.|.+|.|+|...+ |++|+.||.|++||++...-.+..++.|+.++. +..++
T Consensus 170 VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkv 249 (397)
T KOG4283|consen 170 VRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKV 249 (397)
T ss_pred EEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccccccee
Confidence 9999999998765 8899999999999997764 788999999999999866445555665553332 44678
Q ss_pred eeEEEeecC-------Cccceeeeec
Q 012367 444 TGIQGRISK-------NYDNFRRFQT 462 (465)
Q Consensus 444 t~~~f~p~g-------s~d~~~~~~~ 462 (465)
.|++|..+| ..+.+++|..
T Consensus 250 ngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 250 NGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred eeeeecccchhhhhccCccceEEeec
Confidence 899998875 4466888874
No 75
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=2.7e-20 Score=190.22 Aligned_cols=198 Identities=21% Similarity=0.331 Sum_probs=155.8
Q ss_pred ccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (465)
Q Consensus 212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (465)
-.+.+.+.||.+.|..|.||.++ +|+|+|.|.|||+|++....+
T Consensus 359 ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~C----------------------------------- 402 (712)
T KOG0283|consen 359 EKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKEC----------------------------------- 402 (712)
T ss_pred ccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcce-----------------------------------
Confidence 45678999999999999999876 899999999999999986433
Q ss_pred CceeeecCCcceeeeccccceEEEEecC--CCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEe
Q 012367 292 DEVFQIEESPLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS 369 (465)
Q Consensus 292 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~--~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs 369 (465)
++.| .|..-|+|++|+| ++++++|+-|+.||||++...+.+.-......|++++|.| +|++.+.|+
T Consensus 403 ----------L~~F-~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~P-dGk~avIGt 470 (712)
T KOG0283|consen 403 ----------LKVF-SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSP-DGKGAVIGT 470 (712)
T ss_pred ----------eeEE-ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEecc-CCceEEEEE
Confidence 3334 4999999999998 4799999999999999999988888888889999999999 999999999
Q ss_pred CCCcEEEEeCCCCeEEec---cc------CCCCeEEEEEeeCC-CEEEEEEcCCcEEEEEecCCceeeeEeeecCccccc
Q 012367 370 IDGKVRIWGVCEKRVVDW---AD------VRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS 439 (465)
Q Consensus 370 ~Dg~I~iwd~~~~~~~~~---~~------~~~~V~sv~~spdg-~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~ 439 (465)
.+|.+++|+....+++.. .. ....|+.+.|.|.. ..+++.+.|..|||||.++..+...--.+++
T Consensus 471 ~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n----- 545 (712)
T KOG0283|consen 471 FNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN----- 545 (712)
T ss_pred eccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccccc-----
Confidence 999999999988776531 11 12379999999844 4688889999999999977665332111221
Q ss_pred CCceeeEEEeecCCc------c-ceeeeec
Q 012367 440 GNKITGIQGRISKNY------D-NFRRFQT 462 (465)
Q Consensus 440 ~~~It~~~f~p~gs~------d-~~~~~~~ 462 (465)
...-+..+|+.+|.| | .+.+|..
T Consensus 546 ~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 546 TSSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred CCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 122344556666555 3 3667764
No 76
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1e-19 Score=181.46 Aligned_cols=230 Identities=19% Similarity=0.289 Sum_probs=172.2
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec-CCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFT-DDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (465)
+...|+++.|+++|.+||.|..+|.|.|||+.+......... ....+.+......+.........+.... .....
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~d----vR~~~ 291 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHD----VRISQ 291 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEE----Eecch
Confidence 388999999999999999999999999999988766655544 3333333333322222222211111110 01111
Q ss_pred CcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEe--CCCcEE
Q 012367 300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS--IDGKVR 375 (465)
Q Consensus 300 ~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs--~Dg~I~ 375 (465)
.....+.+|...|..++|++++ ++++|+.|..|.|||.....++..+ .|...|.+++|+|....+||+|+ .|+.|+
T Consensus 292 ~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~ 371 (484)
T KOG0305|consen 292 HVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIK 371 (484)
T ss_pred hhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEE
Confidence 2222478999999999999985 9999999999999999777776666 79999999999999999999975 599999
Q ss_pred EEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEE--EcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCC
Q 012367 376 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVG--SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKN 453 (465)
Q Consensus 376 iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sg--s~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs 453 (465)
+||..++..+........|.+|.|++..+-|+++ ..++.|.||+..+.++. ..+.. |..+|-.++.+|+|.
T Consensus 372 fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~-~~l~g------H~~RVl~la~SPdg~ 444 (484)
T KOG0305|consen 372 FWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV-AELLG------HTSRVLYLALSPDGE 444 (484)
T ss_pred EEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee-eeecC------CcceeEEEEECCCCC
Confidence 9999999999988899999999999998777664 45789999999884432 12222 447899999999954
Q ss_pred c-------cceeeee
Q 012367 454 Y-------DNFRRFQ 461 (465)
Q Consensus 454 ~-------d~~~~~~ 461 (465)
+ .++++|.
T Consensus 445 ~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 445 TIVTGAADETLRFWN 459 (484)
T ss_pred EEEEecccCcEEecc
Confidence 4 4567765
No 77
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.85 E-value=4.3e-21 Score=177.59 Aligned_cols=192 Identities=23% Similarity=0.415 Sum_probs=159.6
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (465)
....|.|+.+ |...+++|..|++|+|||..+..+........+.+.+......+.+.........++..+ .+.
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~-----tge 268 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVN-----TGE 268 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEecc-----CCc
Confidence 4567999998 455899999999999999999888777777777777666666666665555555444333 357
Q ss_pred cceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEe---EEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEE
Q 012367 301 PLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCL---NVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRI 376 (465)
Q Consensus 301 ~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l---~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~i 376 (465)
++.++-+|...|..+.|++ |+++|+|.|.++.+||+.+...+ +++ +|-..|+.+.| +.+|++++|.|++|++
T Consensus 269 ~l~tlihHceaVLhlrf~n-g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf---d~kyIVsASgDRTikv 344 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFSN-GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKV 344 (499)
T ss_pred hhhHHhhhcceeEEEEEeC-CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc---ccceEEEecCCceEEE
Confidence 8899999999999999975 79999999999999999876532 233 69999999999 5679999999999999
Q ss_pred EeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 377 WGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 377 wd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
|++.++..+. +.+|...|-|+.|. |+++++|+.|.+|++||+..+..
T Consensus 345 W~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~c 392 (499)
T KOG0281|consen 345 WSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGAC 392 (499)
T ss_pred Eeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHH
Confidence 9999999886 78899999888884 88999999999999999997765
No 78
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=9.9e-20 Score=166.91 Aligned_cols=195 Identities=24% Similarity=0.374 Sum_probs=148.5
Q ss_pred cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (465)
Q Consensus 213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (465)
.+...+++|.++|++++. +|.|+||||.|-+|+|||+...
T Consensus 34 ~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~-------------------------------------- 73 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKR-------------------------------------- 73 (362)
T ss_pred eccccccccccceeEEEe--cceeEeccCCCCcEEEEeccch--------------------------------------
Confidence 334567899999999999 5889999999999999999863
Q ss_pred ceeeecCCcceeeeccccceEEEEecCCC---EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEE
Q 012367 293 EVFQIEESPLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISG 368 (465)
Q Consensus 293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~---~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sg 368 (465)
..+..+..|.+.|+++.|.+.- .|++|+.||.|.+|++..-.++..+ .|.+.|+.++.+| .+++.++.
T Consensus 74 -------~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHP-S~KLALsV 145 (362)
T KOG0294|consen 74 -------KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHP-SGKLALSV 145 (362)
T ss_pred -------hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecC-CCceEEEE
Confidence 3345566799999999998753 8999999999999999999999999 4889999999999 99999999
Q ss_pred eCCCcEEEEeCCCCeEEecccCCCCeEEEEEee---------------------------------------CCCEEEEE
Q 012367 369 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIP---------------------------------------DGKGFIVG 409 (465)
Q Consensus 369 s~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~sp---------------------------------------dg~~l~sg 409 (465)
+.|+.++.||+-.++...........+.|.|+| ++..|++|
T Consensus 146 g~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG 225 (362)
T KOG0294|consen 146 GGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVG 225 (362)
T ss_pred cCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEe
Confidence 999999999997765333222222222233333 34467888
Q ss_pred EcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec---------CCccceeeeec
Q 012367 410 SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS---------KNYDNFRRFQT 462 (465)
Q Consensus 410 s~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~---------gs~d~~~~~~~ 462 (465)
..|+.|.+||.+. ..++..+..|. ++|.++.+.-+ ++...+++|+.
T Consensus 226 ~d~~~i~~~D~ds-~~~~~~~~AH~------~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~ 280 (362)
T KOG0294|consen 226 GDNEWISLKDTDS-DTPLTEFLAHE------NRVKDIASYTNPEHEYLVTASSDGFIKVWDI 280 (362)
T ss_pred cCCceEEEeccCC-Cccceeeecch------hheeeeEEEecCCceEEEEeccCceEEEEEc
Confidence 8899999999887 34444555555 45666653322 44445777775
No 79
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.84 E-value=1.9e-19 Score=167.90 Aligned_cols=164 Identities=21% Similarity=0.392 Sum_probs=148.5
Q ss_pred hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (465)
++|..|+++|.+++.+|+.+++||||.|..-.+|++.++.
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge---------------------------------------- 97 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE---------------------------------------- 97 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc----------------------------------------
Confidence 6788999999999999999999999999999999998753
Q ss_pred eecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCCCc
Q 012367 296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGK 373 (465)
Q Consensus 296 ~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg~ 373 (465)
....+.+|...|+++.|+.++ +|+||..+|.|+||+..++.....+. .-..+.=+.|+| .+.+|+.|+.||.
T Consensus 98 -----~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp-~a~illAG~~DGs 171 (399)
T KOG0296|consen 98 -----FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGS 171 (399)
T ss_pred -----ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecc-cccEEEeecCCCc
Confidence 355677999999999999875 99999999999999999999888874 555677789999 9999999999999
Q ss_pred EEEEeCCC-CeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 374 VRIWGVCE-KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 374 I~iwd~~~-~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
|-+|.+.+ +.+..+.+|...+++-.|.|+|+.+++|..||+|++|++.++..
T Consensus 172 vWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p 224 (399)
T KOG0296|consen 172 VWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQP 224 (399)
T ss_pred EEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCce
Confidence 99999998 44555889999999999999999999999999999999998854
No 80
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.84 E-value=3.3e-20 Score=164.95 Aligned_cols=191 Identities=19% Similarity=0.349 Sum_probs=166.7
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (465)
.|+.-|.+++|+.|.++|+||+.+..+||+|++.. .
T Consensus 98 ~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p--------------------------------------------~ 133 (334)
T KOG0278|consen 98 EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRP--------------------------------------------K 133 (334)
T ss_pred hhhheeeeEEecccchhhhccchHHHhhhhhccCC--------------------------------------------C
Confidence 68899999999999999999999999999999863 2
Q ss_pred CcceeeeccccceEEEEecC-CCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEe
Q 012367 300 SPLQELHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 378 (465)
Q Consensus 300 ~~~~~~~gh~~~V~~l~~s~-~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd 378 (465)
.|..++.+|++.|..+-|.. +..++|++.|++||+||.+++..++.+..+.+|+++.+++ +++++.++ ..+.|.+||
T Consensus 134 App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~-dG~ilTia-~gssV~Fwd 211 (334)
T KOG0278|consen 134 APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQ-DGRILTIA-YGSSVKFWD 211 (334)
T ss_pred CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeecc-CCCEEEEe-cCceeEEec
Confidence 46677889999999999975 6789999999999999999999999999999999999999 88876655 578899999
Q ss_pred CCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC------
Q 012367 379 VCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK------ 452 (465)
Q Consensus 379 ~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g------ 452 (465)
..+-.++........|.+.+.+|+...+++|+.|+.++.||..++.-.-. + .+.+..+|..+.|+|+|
T Consensus 212 aksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~----~--nkgh~gpVhcVrFSPdGE~yAsG 285 (334)
T KOG0278|consen 212 AKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS----Y--NKGHFGPVHCVRFSPDGELYASG 285 (334)
T ss_pred cccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeee----c--ccCCCCceEEEEECCCCceeecc
Confidence 99998888888889999999999999999999999999999998754322 1 23466899999999984
Q ss_pred Ccc-ceeeeec
Q 012367 453 NYD-NFRRFQT 462 (465)
Q Consensus 453 s~d-~~~~~~~ 462 (465)
+.| ++|+|++
T Consensus 286 SEDGTirlWQt 296 (334)
T KOG0278|consen 286 SEDGTIRLWQT 296 (334)
T ss_pred CCCceEEEEEe
Confidence 445 5899985
No 81
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.84 E-value=1e-19 Score=174.18 Aligned_cols=220 Identities=24% Similarity=0.382 Sum_probs=162.6
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec--CCceee
Q 012367 219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI--PDEVFQ 296 (465)
Q Consensus 219 ~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 296 (465)
.+|...|.+++.|+||+|||||+.|..|.||+..+.+...........+. .+.+............ ...+|.
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~------~L~fr~gt~~lys~s~Drsvkvw~ 272 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVS------SLAFRKGTSELYSASADRSVKVWS 272 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhccccccccee------eeeeecCccceeeeecCCceEEEe
Confidence 38999999999999999999999999999999998766544222222211 1112111111111111 123444
Q ss_pred ec-CCcceeeeccccceEEEEecCCCEEEEE-eCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcE
Q 012367 297 IE-ESPLQELHGHKGDVLDLAWSNSNYLLSC-SMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKV 374 (465)
Q Consensus 297 ~~-~~~~~~~~gh~~~V~~l~~s~~~~l~s~-s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I 374 (465)
+. ...+.++.||.+.|.+|....-..++|. +.|+++++|++.....+....+.+.+-|++|- +...|++||.+|.|
T Consensus 273 ~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~I--n~~HfvsGSdnG~I 350 (479)
T KOG0299|consen 273 IDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSI 350 (479)
T ss_pred hhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEe--cccceeeccCCceE
Confidence 43 3456788999999999988766555554 59999999999666555555788899999997 57889999999999
Q ss_pred EEEeCCCCeEEec--cc-----------CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee---EeeecCcccc
Q 012367 375 RIWGVCEKRVVDW--AD-----------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE---KVDFHDRKKT 438 (465)
Q Consensus 375 ~iwd~~~~~~~~~--~~-----------~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~---~~~~~~~~~~ 438 (465)
.+|++...+++.. .. ++.+|++++..|...++++|+.+|+|++|-+..+-.++. .+.+.
T Consensus 351 aLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~----- 425 (479)
T KOG0299|consen 351 ALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV----- 425 (479)
T ss_pred EEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc-----
Confidence 9999988776531 11 223899999999999999999999999999999844433 33333
Q ss_pred cCCceeeEEEeecCC
Q 012367 439 SGNKITGIQGRISKN 453 (465)
Q Consensus 439 ~~~~It~~~f~p~gs 453 (465)
..|++++|+++|.
T Consensus 426 --GfVNsl~f~~sgk 438 (479)
T KOG0299|consen 426 --GFVNSLAFSNSGK 438 (479)
T ss_pred --cEEEEEEEccCCC
Confidence 5799999999987
No 82
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.84 E-value=1.5e-19 Score=160.89 Aligned_cols=164 Identities=21% Similarity=0.383 Sum_probs=146.9
Q ss_pred hhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (465)
Q Consensus 215 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (465)
..++.+|++.|..+-|....+.++|++.|++||+||..++...
T Consensus 136 p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v------------------------------------- 178 (334)
T KOG0278|consen 136 PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEV------------------------------------- 178 (334)
T ss_pred chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEE-------------------------------------
Confidence 3678899999999999999999999999999999999986443
Q ss_pred eeecCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcE
Q 012367 295 FQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKV 374 (465)
Q Consensus 295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I 374 (465)
+++. .+.+|+++.++++|.+++-...+.|+.||..+-..++.+.....|.+...+| +..++++|+.|..+
T Consensus 179 --------~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P-~k~~fVaGged~~~ 248 (334)
T KOG0278|consen 179 --------QSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHP-KKEFFVAGGEDFKV 248 (334)
T ss_pred --------EEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccC-CCceEEecCcceEE
Confidence 2222 3468899999999999999999999999999999999999999999999999 88999999999999
Q ss_pred EEEeCCCCeEEec--ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 375 RIWGVCEKRVVDW--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 375 ~iwd~~~~~~~~~--~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
+.||..++.-+.. .+|.++|.||.|+|||...++|+.||+|++|.+..++.
T Consensus 249 ~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 249 YKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred EEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 9999999876653 78999999999999999999999999999999876554
No 83
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=5.8e-20 Score=162.17 Aligned_cols=180 Identities=18% Similarity=0.343 Sum_probs=153.7
Q ss_pred CcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccccc
Q 012367 192 PKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNA 271 (465)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~ 271 (465)
.....++.|...+. .+.+++.+|...|..++.+.|...+|+||.|..|.+||+.++
T Consensus 36 GsdrtvrLWNp~rg-------~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG----------------- 91 (307)
T KOG0316|consen 36 GSDRTVRLWNPLRG-------ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG----------------- 91 (307)
T ss_pred CCCceEEeeccccc-------ceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccC-----------------
Confidence 34455556644333 456889999999999999999999999999999999999986
Q ss_pred CCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCC--eEeEEec-
Q 012367 272 KEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCN--QCLNVFD- 347 (465)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~--~~l~~~~- 347 (465)
+.++.+.||.+.|+.++|+.+ ..+++|+.|.++++||-++. ++++.+.
T Consensus 92 ----------------------------kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde 143 (307)
T KOG0316|consen 92 ----------------------------KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE 143 (307)
T ss_pred ----------------------------eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh
Confidence 447788899999999999975 58999999999999999764 5677774
Q ss_pred CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceee
Q 012367 348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL 427 (465)
Q Consensus 348 h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~ 427 (465)
..+.|.+|.. .+..|++||.||++|.||++.|++.. .....+|++++|++||+..++++.|+++++.|-.++++..
T Consensus 144 a~D~V~Si~v---~~heIvaGS~DGtvRtydiR~G~l~s-Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~ 219 (307)
T KOG0316|consen 144 AKDGVSSIDV---AEHEIVAGSVDGTVRTYDIRKGTLSS-DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLK 219 (307)
T ss_pred hcCceeEEEe---cccEEEeeccCCcEEEEEeecceeeh-hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHH
Confidence 6778999998 56889999999999999999998754 3345689999999999999999999999999999988743
No 84
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.83 E-value=8.2e-20 Score=170.92 Aligned_cols=210 Identities=24% Similarity=0.365 Sum_probs=166.2
Q ss_pred ccCCCcEEEEEECCCCC--EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367 219 QAHKGCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (465)
Q Consensus 219 ~~H~~~I~~l~fspdg~--~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (465)
-+|.+.|+.+..++-|+ +.|+-++.|.|+||++........ .... .+-.
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~---~~~~--------------------------~~~~ 198 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALS---EPGL--------------------------EVKD 198 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhc---Cccc--------------------------cccc
Confidence 48999999999988765 778889999999999875211000 0000 0001
Q ss_pred ecCCcceeeeccccceEEEEecC--CCEEEEEeCCCeEEEEeCCCCeEe----EEecCCCceEEEEEccCCCCEEEEEeC
Q 012367 297 IEESPLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQCL----NVFDHHNYVTCVQFNPIDDNYFISGSI 370 (465)
Q Consensus 297 ~~~~~~~~~~gh~~~V~~l~~s~--~~~l~s~s~DgtV~lWD~~~~~~l----~~~~h~~~V~~i~fsp~~~~~l~sgs~ 370 (465)
....|+.++.+|.+.=..|+|+| .|.|+||..-+.|++|...++.-. ....|...|..++|+|.....|+|||.
T Consensus 199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~ 278 (440)
T KOG0302|consen 199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC 278 (440)
T ss_pred cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec
Confidence 23578999999999999999998 478999999999999999886421 112599999999999999999999999
Q ss_pred CCcEEEEeCCCC---eEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee--eeEeeecCcccccCCceee
Q 012367 371 DGKVRIWGVCEK---RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK--LEKVDFHDRKKTSGNKITG 445 (465)
Q Consensus 371 Dg~I~iwd~~~~---~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~It~ 445 (465)
||+|+|||++.+ ..+....|...|+.|.|+.+-.+|++|+.||+++|||++.-+.. +.++.+|. .+||+
T Consensus 279 DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk------~pIts 352 (440)
T KOG0302|consen 279 DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHK------APITS 352 (440)
T ss_pred CceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEecc------CCeeE
Confidence 999999999987 45667889999999999998889999999999999999865543 33555555 78999
Q ss_pred EEEeec--------CCccceeeeecC
Q 012367 446 IQGRIS--------KNYDNFRRFQTP 463 (465)
Q Consensus 446 ~~f~p~--------gs~d~~~~~~~p 463 (465)
+.|+|. |..+.+.+|+..
T Consensus 353 ieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 353 IEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred EEeccccCceEEeccCCCcEEEEEee
Confidence 999975 566678888753
No 85
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.83 E-value=1.1e-19 Score=173.98 Aligned_cols=202 Identities=20% Similarity=0.345 Sum_probs=162.4
Q ss_pred cCCCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec
Q 012367 220 AHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 298 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (465)
-|.+.|+.+.+.|+.. .+||++..+.|.|||............ +
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~-----------------------------------~ 166 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG-----------------------------------E 166 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc-----------------------------------c
Confidence 6999999999999765 788889999999999876321110000 1
Q ss_pred CCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCe-------EeEEe-cCCCceEEEEEccCCCCEEEEE
Q 012367 299 ESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQ-------CLNVF-DHHNYVTCVQFNPIDDNYFISG 368 (465)
Q Consensus 299 ~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~-------~l~~~-~h~~~V~~i~fsp~~~~~l~sg 368 (465)
..|...+.||...-.+|+|++. +.|++++.|++|++||+.... ....| .|...|..++|+|.+..+|+++
T Consensus 167 ~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv 246 (422)
T KOG0264|consen 167 CRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSV 246 (422)
T ss_pred CCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheee
Confidence 2456678899998889999974 699999999999999996543 23334 5999999999999999999999
Q ss_pred eCCCcEEEEeCCC--CeEE-ecccCCCCeEEEEEee-CCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCcee
Q 012367 369 SIDGKVRIWGVCE--KRVV-DWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 444 (465)
Q Consensus 369 s~Dg~I~iwd~~~--~~~~-~~~~~~~~V~sv~~sp-dg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It 444 (465)
+.|+.+.|||+++ .+.. ...+|...|++++|+| ++..||+|+.|++|.+||++.-+.++..+..|. ..|.
T Consensus 247 ~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~------dev~ 320 (422)
T KOG0264|consen 247 GDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHE------DEVF 320 (422)
T ss_pred cCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCC------cceE
Confidence 9999999999995 3333 2667999999999999 567889999999999999998888766665555 6899
Q ss_pred eEEEeec--------CCccceeeeec
Q 012367 445 GIQGRIS--------KNYDNFRRFQT 462 (465)
Q Consensus 445 ~~~f~p~--------gs~d~~~~~~~ 462 (465)
.++|+|. |....+.+|+.
T Consensus 321 ~V~WSPh~etvLASSg~D~rl~vWDl 346 (422)
T KOG0264|consen 321 QVEWSPHNETVLASSGTDRRLNVWDL 346 (422)
T ss_pred EEEeCCCCCceeEecccCCcEEEEec
Confidence 9999997 55556788875
No 86
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=4e-20 Score=174.64 Aligned_cols=238 Identities=19% Similarity=0.262 Sum_probs=162.9
Q ss_pred cccCCCCCCCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeee
Q 012367 182 SEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSF 261 (465)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~ 261 (465)
+...+..++..+.....+|+-- ....+...+++.+|..+|..+.||||.+||++++.|..+.+||+.++.....+.
T Consensus 233 S~nGkyLAsaSkD~Taiiw~v~----~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~ 308 (519)
T KOG0293|consen 233 SHNGKYLASASKDSTAIIWIVV----YDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP 308 (519)
T ss_pred cCCCeeEeeccCCceEEEEEEe----cCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc
Confidence 5555555555555555555322 223366678999999999999999999999999999999999999877655444
Q ss_pred cCCCC-------------cccccCCCeEEeccCCCCceeEe-------------cCCc-------------eeeecCCcc
Q 012367 262 TDDGG-------------FGSNAKEGKIKFGKKKSSHVPVV-------------IPDE-------------VFQIEESPL 302 (465)
Q Consensus 262 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~-------------~~~~~~~~~ 302 (465)
...+. +.....+..+..+...+.....+ .++. ++..+....
T Consensus 309 ~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d 388 (519)
T KOG0293|consen 309 SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD 388 (519)
T ss_pred cCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh
Confidence 33111 11111111111111111100000 0010 011111111
Q ss_pred eeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cC--CCceEEEEEccCCCCEEEEEeCCCcEEEEe
Q 012367 303 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DH--HNYVTCVQFNPIDDNYFISGSIDGKVRIWG 378 (465)
Q Consensus 303 ~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h--~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd 378 (465)
..+..-..+|+++..+.++ ++++.-.+..+.+||+.....++.+ +| ..++..-||.-.+..++++||.|++|+||+
T Consensus 389 r~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWh 468 (519)
T KOG0293|consen 389 RGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWH 468 (519)
T ss_pred hccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEE
Confidence 1123345788999999876 6777888999999999977777766 44 447888889886779999999999999999
Q ss_pred CCCCeEEe-cccCCCCeEEEEEee-CCCEEEEEEcCCcEEEEEecCC
Q 012367 379 VCEKRVVD-WADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGN 423 (465)
Q Consensus 379 ~~~~~~~~-~~~~~~~V~sv~~sp-dg~~l~sgs~dG~v~iwd~~~~ 423 (465)
..+++++. +.+|...|++|+|+| +..++|+|+.||+|+||-....
T Consensus 469 r~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 469 RISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred ccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 99988775 899999999999999 4568999999999999987654
No 87
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1e-20 Score=189.63 Aligned_cols=183 Identities=19% Similarity=0.420 Sum_probs=160.1
Q ss_pred hhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (465)
Q Consensus 217 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (465)
.|.+|.++|-+|.|++...+|++|+.||+|++||+.+.
T Consensus 65 S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA------------------------------------------ 102 (825)
T KOG0267|consen 65 SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA------------------------------------------ 102 (825)
T ss_pred eeeccCCcceeeecCcchhhhcccccCCceeeeehhhh------------------------------------------
Confidence 37899999999999999999999999999999999863
Q ss_pred ecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCCCcE
Q 012367 297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKV 374 (465)
Q Consensus 297 ~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg~I 374 (465)
+.++++.||...+.++.|+|-+ +.++++.|+.+++||++...|...++ |...|.++.|+| +|+++++|+.|.++
T Consensus 103 ---k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tv 178 (825)
T KOG0267|consen 103 ---KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTV 178 (825)
T ss_pred ---hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecC-CCceeeccCCccee
Confidence 4577888999999999999976 78899999999999999888999995 888999999999 99999999999999
Q ss_pred EEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC
Q 012367 375 RIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK 452 (465)
Q Consensus 375 ~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g 452 (465)
+|||+..|++.. +..|...+.++.|+|..-.++.|+.|+++++||+++-.+.. ..+.....|.+..|.|++
T Consensus 179 ki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~-------s~~~~~~~v~~~~fn~~~ 250 (825)
T KOG0267|consen 179 KIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS-------SGKPETDGVRSLAFNPDG 250 (825)
T ss_pred eeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEee-------ccCCccCCceeeeecCCc
Confidence 999999999886 77799999999999999999999999999999997533311 111124567778888775
No 88
>PTZ00420 coronin; Provisional
Probab=99.83 E-value=6e-19 Score=182.39 Aligned_cols=125 Identities=21% Similarity=0.399 Sum_probs=106.8
Q ss_pred cceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCe--------EeEEe-cCCCceEEEEEccCCCC-EEEEE
Q 012367 301 PLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQ--------CLNVF-DHHNYVTCVQFNPIDDN-YFISG 368 (465)
Q Consensus 301 ~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~--------~l~~~-~h~~~V~~i~fsp~~~~-~l~sg 368 (465)
++..+.+|.+.|.+++|+|. .+|+||+.|++|+|||+.++. ++..+ .|...|.+++|+| ++. +++++
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P-~g~~iLaSg 144 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNP-MNYYIMCSS 144 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECC-CCCeEEEEE
Confidence 46677899999999999985 599999999999999997642 23344 5889999999999 555 56799
Q ss_pred eCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367 369 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK 426 (465)
Q Consensus 369 s~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~ 426 (465)
+.|++|+|||+++++.+....+...|.+++|+|+|..|++++.|+.|+|||++++...
T Consensus 145 S~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 145 GFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA 202 (568)
T ss_pred eCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE
Confidence 9999999999999876654456788999999999999999999999999999987654
No 89
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=7.8e-20 Score=186.54 Aligned_cols=160 Identities=19% Similarity=0.423 Sum_probs=146.7
Q ss_pred hccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeee
Q 012367 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 297 (465)
Q Consensus 218 l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (465)
+..-+..|..++|||...+++++-..|+|++||..-+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~------------------------------------------- 41 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG------------------------------------------- 41 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhh-------------------------------------------
Confidence 3345667899999999999999999999999998742
Q ss_pred cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEE
Q 012367 298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVR 375 (465)
Q Consensus 298 ~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~ 375 (465)
..+..|..|.++|..++|+|.+ +++||+.|..|+||+..+.+|+.++ +|-++|..+.|++ .-.+++|+|.|.+||
T Consensus 42 --tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIr 118 (1202)
T KOG0292|consen 42 --TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIR 118 (1202)
T ss_pred --hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccC-CCceEEEccCCCeEE
Confidence 4577888999999999999975 9999999999999999999999888 7999999999999 889999999999999
Q ss_pred EEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367 376 IWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN 423 (465)
Q Consensus 376 iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~ 423 (465)
||+..++.++. +.+|...|.|..|+|....++++|.|-+||+||+.+-
T Consensus 119 IWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGL 167 (1202)
T KOG0292|consen 119 IWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGL 167 (1202)
T ss_pred EEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecch
Confidence 99999988775 8999999999999999999999999999999999853
No 90
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.82 E-value=2.3e-19 Score=168.06 Aligned_cols=204 Identities=19% Similarity=0.287 Sum_probs=162.4
Q ss_pred cchhhhccCCCcEEEEEECCCCC---EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEe
Q 012367 213 YTSQEIQAHKGCIWTLKFSPDGR---YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 289 (465)
Q Consensus 213 ~~~~~l~~H~~~I~~l~fspdg~---~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (465)
...+++.||.++|.+++|..... .|++||.|.++++|.++.+....
T Consensus 135 k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~------------------------------- 183 (423)
T KOG0313|consen 135 KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKV------------------------------- 183 (423)
T ss_pred ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhh-------------------------------
Confidence 34567789999999888754333 59999999999999987643221
Q ss_pred cCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCC-------------------------CeEe
Q 012367 290 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-------------------------NQCL 343 (465)
Q Consensus 290 ~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~-------------------------~~~l 343 (465)
+.++.-.||...|.++...+++ .+++||.|.+|++|+..+ +.++
T Consensus 184 ----------~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~ 253 (423)
T KOG0313|consen 184 ----------KALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL 253 (423)
T ss_pred ----------hHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence 2233334999999999998875 899999999999999321 1233
Q ss_pred EEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367 344 NVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG 422 (465)
Q Consensus 344 ~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~ 422 (465)
-.+ +|..+|.++.|++ ...++++|.|.+|+.||+.++...........++++.++|..+.|++|+.|..+++||.++
T Consensus 254 vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~ 331 (423)
T KOG0313|consen 254 VTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRT 331 (423)
T ss_pred EEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCC
Confidence 334 5999999999986 7789999999999999999999988777888999999999999999999999999999997
Q ss_pred CceeeeEeeecCcccccCCceeeEEEeec-------CCccc-eeeeecC
Q 012367 423 NDLKLEKVDFHDRKKTSGNKITGIQGRIS-------KNYDN-FRRFQTP 463 (465)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~It~~~f~p~-------gs~d~-~~~~~~p 463 (465)
+.-......+-+ |.+.|.++.++|. ++||+ .++|++.
T Consensus 332 ~~gs~v~~s~~g----H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 332 GDGSVVSQSLIG----HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVR 376 (423)
T ss_pred CCCceeEEeeec----chhhhhheecCCCCceEEEEEecCCeEEEEEec
Confidence 765544443333 4478888887775 78887 5777753
No 91
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=1.3e-19 Score=169.68 Aligned_cols=167 Identities=22% Similarity=0.443 Sum_probs=137.9
Q ss_pred ccchhhhccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec
Q 012367 212 LYTSQEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 290 (465)
Q Consensus 212 ~~~~~~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (465)
..+..++.+|.+.=++|+|||--. .|+||.--+.|++|...++.
T Consensus 201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~----------------------------------- 245 (440)
T KOG0302|consen 201 FRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS----------------------------------- 245 (440)
T ss_pred cCceEEecccCccceeeecccccccccccCccccceEeeeeccCc-----------------------------------
Confidence 344567789999999999999322 58888777889999887632
Q ss_pred CCceeeecCCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCC---eEeEEecCCCceEEEEEccCCCCEE
Q 012367 291 PDEVFQIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCN---QCLNVFDHHNYVTCVQFNPIDDNYF 365 (465)
Q Consensus 291 ~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~---~~l~~~~h~~~V~~i~fsp~~~~~l 365 (465)
|.... ..+.+|+..|-+|+|+|. +.++|||.||+|+|||++.+ .++.+-.|...|+.|.|+. ...+|
T Consensus 246 ----W~vd~---~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr-~~~lL 317 (440)
T KOG0302|consen 246 ----WKVDQ---RPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR-REPLL 317 (440)
T ss_pred ----eeecC---ccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC-Cccee
Confidence 11122 234579999999999984 79999999999999999988 5666667999999999999 66799
Q ss_pred EEEeCCCcEEEEeCCCC---e-EEecccCCCCeEEEEEeeC-CCEEEEEEcCCcEEEEEec
Q 012367 366 ISGSIDGKVRIWGVCEK---R-VVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKAS 421 (465)
Q Consensus 366 ~sgs~Dg~I~iwd~~~~---~-~~~~~~~~~~V~sv~~spd-g~~l~sgs~dG~v~iwd~~ 421 (465)
++|+.||+++|||++.- + +..+..|..+|++|.|+|. ...|++++.|..|.+||+.
T Consensus 318 asG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 318 ASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred eecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 99999999999999863 3 3358889999999999995 4578889999999999987
No 92
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.82 E-value=1.5e-19 Score=165.32 Aligned_cols=170 Identities=19% Similarity=0.386 Sum_probs=144.2
Q ss_pred hhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (465)
Q Consensus 215 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (465)
+++|..|..+|+++.|+|....|++|+.|++|+++|+......
T Consensus 165 IRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saK------------------------------------- 207 (430)
T KOG0640|consen 165 IRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAK------------------------------------- 207 (430)
T ss_pred EeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHH-------------------------------------
Confidence 4678899999999999999999999999999999998753221
Q ss_pred eeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe----cCCCceEEEEEccCCCCEEEEEe
Q 012367 295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF----DHHNYVTCVQFNPIDDNYFISGS 369 (465)
Q Consensus 295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~----~h~~~V~~i~fsp~~~~~l~sgs 369 (465)
+..+.+ ....+|.+|.|+|.| +|+.|..--++++||+.+.+|...- +|.+.|+++.+++ .+++.++||
T Consensus 208 -----rA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaS 280 (430)
T KOG0640|consen 208 -----RAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTAS 280 (430)
T ss_pred -----HHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEec
Confidence 011111 245689999999986 8888888899999999999987665 4899999999999 999999999
Q ss_pred CCCcEEEEeCCCCeEEeccc--C-CCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367 370 IDGKVRIWGVCEKRVVDWAD--V-RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 428 (465)
Q Consensus 370 ~Dg~I~iwd~~~~~~~~~~~--~-~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~ 428 (465)
.||.|+|||--+++++...+ | ...|.+..|..+|+++++.+.|..+++|.+.++.....
T Consensus 281 kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~ 342 (430)
T KOG0640|consen 281 KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKE 342 (430)
T ss_pred cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEE
Confidence 99999999998888876332 3 45699999999999999999999999999998877544
No 93
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=1.1e-19 Score=183.44 Aligned_cols=190 Identities=17% Similarity=0.336 Sum_probs=156.8
Q ss_pred EEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcce
Q 012367 225 IWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 303 (465)
Q Consensus 225 I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (465)
+..|+|+. +.++|||++..|.|.+||+... +..+.+.
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~------------------------------------------~rnk~l~ 127 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKS------------------------------------------IRNKLLT 127 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCcc------------------------------------------ccchhhh
Confidence 44677764 4569999999999999999752 1234566
Q ss_pred eeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCC
Q 012367 304 ELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 380 (465)
Q Consensus 304 ~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~ 380 (465)
.|..|...|.++.|++. ++|+|||.||+|++||++......++ .....|..|.|+|..+++|+++...|.+++||++
T Consensus 128 ~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlR 207 (839)
T KOG0269|consen 128 VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLR 207 (839)
T ss_pred HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeecc
Confidence 78899999999999974 69999999999999999988877777 5777999999999999999999999999999998
Q ss_pred CCe--EEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc----
Q 012367 381 EKR--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY---- 454 (465)
Q Consensus 381 ~~~--~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~---- 454 (465)
... ...+.+|.+.|.++.|+|++.+||+|+.|+.|+|||+.+.+...... .+ ...++..+.|.|..+|
T Consensus 208 qp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~t-In-----Tiapv~rVkWRP~~~~hLAt 281 (839)
T KOG0269|consen 208 QPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHT-IN-----TIAPVGRVKWRPARSYHLAT 281 (839)
T ss_pred CchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeE-Ee-----ecceeeeeeeccCccchhhh
Confidence 643 34588999999999999999999999999999999999766644311 11 2367888999998665
Q ss_pred -----c-ceeeeec
Q 012367 455 -----D-NFRRFQT 462 (465)
Q Consensus 455 -----d-~~~~~~~ 462 (465)
| .+++|++
T Consensus 282 csmv~dtsV~VWDv 295 (839)
T KOG0269|consen 282 CSMVVDTSVHVWDV 295 (839)
T ss_pred hhccccceEEEEee
Confidence 2 3788874
No 94
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.81 E-value=1.1e-19 Score=169.31 Aligned_cols=249 Identities=12% Similarity=0.236 Sum_probs=177.5
Q ss_pred CCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccc
Q 012367 190 EKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS 269 (465)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~ 269 (465)
+.+-++.+++| ++....+..++++|.|.|..|++.. ..++|+|.|.+|+.|.+... ..... ........
T Consensus 84 SGs~DG~VkiW-------nlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-p~~ti-lg~s~~~g 152 (433)
T KOG0268|consen 84 SGSCDGEVKIW-------NLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP-PLHTI-LGKSVYLG 152 (433)
T ss_pred ccccCceEEEE-------ehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC-cceee-eccccccc
Confidence 33445566655 4555567788999999999999987 57999999999999998763 11111 11111100
Q ss_pred ccCCCeEEeccCCCCceeEecCCceeee-cCCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEe
Q 012367 270 NAKEGKIKFGKKKSSHVPVVIPDEVFQI-EESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF 346 (465)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~ 346 (465)
...........+.+..+ .+|+. ...|++.+.--...|.++.|+|- ..|++|+.|+.|.|||++++.+++..
T Consensus 153 Idh~~~~~~FaTcGe~i------~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KV 226 (433)
T KOG0268|consen 153 IDHHRKNSVFATCGEQI------DIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKV 226 (433)
T ss_pred cccccccccccccCcee------eecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCcccee
Confidence 11111111111111111 23333 35688888888889999999985 58999999999999999999999988
Q ss_pred cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCC--eEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCc
Q 012367 347 DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK--RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 424 (465)
Q Consensus 347 ~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~--~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~ 424 (465)
-..-.-+.|+|+| ....|++|+.|..++.||++.- .+....+|.+.|.+|.|+|.|+-+++|+.|.+|+||.++.+.
T Consensus 227 i~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~ 305 (433)
T KOG0268|consen 227 ILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH 305 (433)
T ss_pred eeeccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCc
Confidence 7777778999999 9999999999999999999863 344588999999999999999999999999999999998765
Q ss_pred eeeeEeeecCcccccCCceeeEE------EeecCCcc-ceeeeec
Q 012367 425 LKLEKVDFHDRKKTSGNKITGIQ------GRISKNYD-NFRRFQT 462 (465)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~It~~~------f~p~gs~d-~~~~~~~ 462 (465)
-.- .+|.++- ..+.++. |..+|+.| |+|+|..
T Consensus 306 SRd---iYhtkRM---q~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 306 SRD---IYHTKRM---QHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred chh---hhhHhhh---heeeEEEEeccccEEEecCCCcceeeeec
Confidence 421 1222211 2355554 44557777 5888863
No 95
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=7.7e-19 Score=165.31 Aligned_cols=205 Identities=24% Similarity=0.367 Sum_probs=156.8
Q ss_pred hccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367 218 IQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (465)
Q Consensus 218 l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (465)
+.||+++|..++|+| +...+||||+|.+|+||++........
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~------------------------------------- 119 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD------------------------------------- 119 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC-------------------------------------
Confidence 469999999999999 556899999999999999986432211
Q ss_pred ecCCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcE
Q 012367 297 IEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKV 374 (465)
Q Consensus 297 ~~~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I 374 (465)
-..|+..+.||...|--++|+|. +.|+|++.|.+|.+|++.++..+-.+.|.+-|+++.|+. +|.+|++.+.|.+|
T Consensus 120 -ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~-dGs~l~TtckDKkv 197 (472)
T KOG0303|consen 120 -LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNR-DGSLLCTTCKDKKV 197 (472)
T ss_pred -cccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEecc-CCceeeeeccccee
Confidence 12578899999999999999985 699999999999999999999999999999999999999 99999999999999
Q ss_pred EEEeCCCCeEEecc-cCCC-CeEEEEEeeCCCEEEEEEc---CCcEEEEEecCCceeee--EeeecCccccc-CCceeeE
Q 012367 375 RIWGVCEKRVVDWA-DVRD-VISAICYIPDGKGFIVGSI---TGTCHFYKASGNDLKLE--KVDFHDRKKTS-GNKITGI 446 (465)
Q Consensus 375 ~iwd~~~~~~~~~~-~~~~-~V~sv~~spdg~~l~sgs~---dG~v~iwd~~~~~~~~~--~~~~~~~~~~~-~~~It~~ 446 (465)
||||.++++++.-. +|.+ .-..+.|-.+|..+-+|-. +..+-+||...-..+.- .++..+...-+ -..=|++
T Consensus 198 Rv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~i 277 (472)
T KOG0303|consen 198 RVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSI 277 (472)
T ss_pred EEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCE
Confidence 99999999988733 5543 3455678889986555543 67899998775444322 22222211111 1233455
Q ss_pred EEeecCCccceeeee
Q 012367 447 QGRISKNYDNFRRFQ 461 (465)
Q Consensus 447 ~f~p~gs~d~~~~~~ 461 (465)
-+.....+.++|-+.
T Consensus 278 vYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 278 VYLCGKGDSSIRYFE 292 (472)
T ss_pred EEEEecCCcceEEEE
Confidence 555555666666554
No 96
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=6.2e-19 Score=175.80 Aligned_cols=161 Identities=25% Similarity=0.478 Sum_probs=142.3
Q ss_pred hhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (465)
Q Consensus 217 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (465)
.+++|...|..++|++|+++||+|+.|+.|.|||...
T Consensus 296 ~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~------------------------------------------- 332 (484)
T KOG0305|consen 296 TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLS------------------------------------------- 332 (484)
T ss_pred hhhcccceeeeeEECCCCCeeccCCCccceEeccCCC-------------------------------------------
Confidence 4889999999999999999999999999999999843
Q ss_pred ecCCcceeeeccccceEEEEecC--CCEEEEE--eCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEE-e-C
Q 012367 297 IEESPLQELHGHKGDVLDLAWSN--SNYLLSC--SMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG-S-I 370 (465)
Q Consensus 297 ~~~~~~~~~~gh~~~V~~l~~s~--~~~l~s~--s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sg-s-~ 370 (465)
..+...+..|.+.|..++|+| .++||+| +.|++|++||+.++..+........|..|.|++ ..+-|+++ + .
T Consensus 333 --~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk-~~kEi~sthG~s 409 (484)
T KOG0305|consen 333 --PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSK-KYKELLSTHGYS 409 (484)
T ss_pred --ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcC-CCCEEEEecCCC
Confidence 256778889999999999998 4688886 469999999999999999999999999999999 55444443 3 3
Q ss_pred CCcEEEEeCCCCeEE-ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367 371 DGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN 423 (465)
Q Consensus 371 Dg~I~iwd~~~~~~~-~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~ 423 (465)
++.|.||+..+...+ .+.+|...|..++++|||..+++|+.|.++++|++-+.
T Consensus 410 ~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 410 ENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 678999999886655 48999999999999999999999999999999999875
No 97
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=4.3e-19 Score=157.52 Aligned_cols=168 Identities=23% Similarity=0.347 Sum_probs=138.9
Q ss_pred cchhhhccCCCcEEEEEECC--CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec
Q 012367 213 YTSQEIQAHKGCIWTLKFSP--DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 290 (465)
Q Consensus 213 ~~~~~l~~H~~~I~~l~fsp--dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (465)
+...+|.||.|||+.++|.. .|.+|||++.||.|.||.-.++.-
T Consensus 47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w---------------------------------- 92 (299)
T KOG1332|consen 47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRW---------------------------------- 92 (299)
T ss_pred eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCch----------------------------------
Confidence 45678899999999999976 799999999999999999876421
Q ss_pred CCceeeecCCcceeeeccccceEEEEecCCC---EEEEEeCCCeEEEEeCCCC--eEeEE--ecCCCceEEEEEccCC--
Q 012367 291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCN--QCLNV--FDHHNYVTCVQFNPID-- 361 (465)
Q Consensus 291 ~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~---~l~s~s~DgtV~lWD~~~~--~~l~~--~~h~~~V~~i~fsp~~-- 361 (465)
........|...|++++|.|.+ .|++++.||.|.|.+.+.. ..... +.|.-.|++++|.|..
T Consensus 93 ---------~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 93 ---------TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred ---------hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 2355667899999999999864 7889999999999998754 22222 2588899999999941
Q ss_pred C-----------CEEEEEeCCCcEEEEeCCCCeEE---ecccCCCCeEEEEEeeCC----CEEEEEEcCCcEEEEEecCC
Q 012367 362 D-----------NYFISGSIDGKVRIWGVCEKRVV---DWADVRDVISAICYIPDG----KGFIVGSITGTCHFYKASGN 423 (465)
Q Consensus 362 ~-----------~~l~sgs~Dg~I~iwd~~~~~~~---~~~~~~~~V~sv~~spdg----~~l~sgs~dG~v~iwd~~~~ 423 (465)
+ +.|++|+.|..|+||+...+.-. .+.+|.+.|+.++|.|.- .+|++++.||+|.||..+..
T Consensus 164 g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e 243 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE 243 (299)
T ss_pred ccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc
Confidence 2 46999999999999999886433 378899999999999964 47999999999999988743
No 98
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.81 E-value=6.7e-19 Score=184.30 Aligned_cols=200 Identities=22% Similarity=0.321 Sum_probs=158.5
Q ss_pred CCCcEEEEEECCCCCEEEEEe--CCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeee-
Q 012367 221 HKGCIWTLKFSPDGRYLASGG--EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI- 297 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaSgs--~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 297 (465)
|...|.+|..+|+|..+|||| .||.++||+.......... ++.
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~----------------------------------~~~~ 57 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEE----------------------------------KNEN 57 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhh----------------------------------hhcc
Confidence 466699999999999999999 9999999997652110000 000
Q ss_pred cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCC------------------CeEeEEe-cCCCceEEEEE
Q 012367 298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC------------------NQCLNVF-DHHNYVTCVQF 357 (465)
Q Consensus 298 ~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~------------------~~~l~~~-~h~~~V~~i~f 357 (465)
-.+.+.....|.+.|+|+.|+|+| +|++||.|+.|.||+... -++...+ +|...|..++|
T Consensus 58 l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~W 137 (942)
T KOG0973|consen 58 LPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNW 137 (942)
T ss_pred cchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceecc
Confidence 135677788899999999999986 999999999999999762 1244445 59999999999
Q ss_pred ccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcc
Q 012367 358 NPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK 436 (465)
Q Consensus 358 sp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~ 436 (465)
+| ++.++++++.|++|.||+..+...+. +.+|...|..+.|.|-|++|++-+.|++|+||++.+-.+.. .+.-+-..
T Consensus 138 sp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k-~It~pf~~ 215 (942)
T KOG0973|consen 138 SP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK-SITKPFEE 215 (942)
T ss_pred CC-CccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE-eeccchhh
Confidence 99 99999999999999999999876665 88999999999999999999999999999999977643322 22222212
Q ss_pred cccCCceeeEEEeecCCccc
Q 012367 437 KTSGNKITGIQGRISKNYDN 456 (465)
Q Consensus 437 ~~~~~~It~~~f~p~gs~d~ 456 (465)
..-...+.-+.++|+|.|-.
T Consensus 216 ~~~~T~f~RlSWSPDG~~la 235 (942)
T KOG0973|consen 216 SPLTTFFLRLSWSPDGHHLA 235 (942)
T ss_pred CCCcceeeecccCCCcCeec
Confidence 22346778889999998854
No 99
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=3.5e-19 Score=179.94 Aligned_cols=203 Identities=18% Similarity=0.331 Sum_probs=156.1
Q ss_pred CcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccc
Q 012367 192 PKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN 270 (465)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~ 270 (465)
...+-+.+|.-.+. ..-...+.|..|+..|+++.|++.. .+|+|||+||+|++||+...
T Consensus 107 s~nG~i~vWdlnk~----~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~---------------- 166 (839)
T KOG0269|consen 107 STNGVISVWDLNKS----IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK---------------- 166 (839)
T ss_pred cCCCcEEEEecCcc----ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc----------------
Confidence 34445555544332 1223346788999999999999854 48999999999999999863
Q ss_pred cCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCC-eEeEEe-
Q 012367 271 AKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCN-QCLNVF- 346 (465)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~-~~l~~~- 346 (465)
+...++.+....|.+++|+|. +.++++...|.+++||++.. ++...+
T Consensus 167 -----------------------------~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~ 217 (839)
T KOG0269|consen 167 -----------------------------KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLT 217 (839)
T ss_pred -----------------------------cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhh
Confidence 234455667789999999984 58999999999999999865 355555
Q ss_pred cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEE--ecccCCCCeEEEEEeeCCCE-EEEEEc--CCcEEEEEec
Q 012367 347 DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV--DWADVRDVISAICYIPDGKG-FIVGSI--TGTCHFYKAS 421 (465)
Q Consensus 347 ~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~--~~~~~~~~V~sv~~spdg~~-l~sgs~--dG~v~iwd~~ 421 (465)
.|.++|.|+.|+| ++.+|||||.|++|+|||..+.+.- .......+|..|+|-|+..+ |++++. |-.|+|||++
T Consensus 218 AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 218 AHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred cccCceEEEeecC-CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeec
Confidence 5999999999999 9999999999999999999865433 34455678999999998765 555554 7899999999
Q ss_pred CCceeeeEeeecCcccccCCceeeEEEee
Q 012367 422 GNDLKLEKVDFHDRKKTSGNKITGIQGRI 450 (465)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~It~~~f~p 450 (465)
..-+++..+.-|. ..++++.|--
T Consensus 297 RPYIP~~t~~eH~------~~vt~i~W~~ 319 (839)
T KOG0269|consen 297 RPYIPYATFLEHT------DSVTGIAWDS 319 (839)
T ss_pred cccccceeeeccC------ccccceeccC
Confidence 8777776665554 4566666544
No 100
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.80 E-value=1.4e-19 Score=168.54 Aligned_cols=229 Identities=16% Similarity=0.305 Sum_probs=165.4
Q ss_pred hhccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC--c
Q 012367 217 EIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD--E 293 (465)
Q Consensus 217 ~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 293 (465)
.|.||.+.|.|++=+|.. ..+|||+.||.|+|||+.+..+...+....+.+.-. .+.. .....+.... +
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi------~v~~--~~~~tvgdDKtvK 132 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGI------CVTQ--TSFFTVGDDKTVK 132 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeE------Eecc--cceEEecCCccee
Confidence 458999999999999986 689999999999999999866554444333322111 1111 1111111111 2
Q ss_pred eeeecCCcceeeeccccceEEEEecC-CCEEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCC
Q 012367 294 VFQIEESPLQELHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID 371 (465)
Q Consensus 294 ~~~~~~~~~~~~~gh~~~V~~l~~s~-~~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~D 371 (465)
.|.+...+++++.+. ..+.+|.-+. ++.++||+. .|-|||.....++..+. ..+.|.++.|+|....+|++++.|
T Consensus 133 ~wk~~~~p~~tilg~-s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD 209 (433)
T KOG0268|consen 133 QWKIDGPPLHTILGK-SVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD 209 (433)
T ss_pred eeeccCCcceeeecc-ccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC
Confidence 345555566666543 4455565543 346677664 47788888777888885 456799999999888899999999
Q ss_pred CcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec
Q 012367 372 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS 451 (465)
Q Consensus 372 g~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~ 451 (465)
+.|.+||++++.++...-..-.-+.|||+|.+-.+++|+.|.+++.||++.-..++.... .+.+.+.++.|+|.
T Consensus 210 rsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~------dhvsAV~dVdfspt 283 (433)
T KOG0268|consen 210 RSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK------DHVSAVMDVDFSPT 283 (433)
T ss_pred CceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhc------ccceeEEEeccCCC
Confidence 999999999998887666667778999999998999999999999999987666554332 24578999999997
Q ss_pred ------CCccc-eeeeec
Q 012367 452 ------KNYDN-FRRFQT 462 (465)
Q Consensus 452 ------gs~d~-~~~~~~ 462 (465)
|+||. +|++.+
T Consensus 284 G~EfvsgsyDksIRIf~~ 301 (433)
T KOG0268|consen 284 GQEFVSGSYDKSIRIFPV 301 (433)
T ss_pred cchhccccccceEEEeec
Confidence 68887 566544
No 101
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.80 E-value=8.8e-19 Score=175.16 Aligned_cols=160 Identities=23% Similarity=0.398 Sum_probs=143.8
Q ss_pred ccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEe
Q 012367 210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 289 (465)
Q Consensus 210 ~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (465)
....+..+|.||++.|.|++...++. ++|||.|.+++||....
T Consensus 89 ~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~------------------------------------ 131 (745)
T KOG0301|consen 89 SQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE------------------------------------ 131 (745)
T ss_pred CCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh------------------------------------
Confidence 44456688999999999999888887 99999999999998764
Q ss_pred cCCceeeecCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEE
Q 012367 290 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISG 368 (465)
Q Consensus 290 ~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sg 368 (465)
....+.||+..|++++.-|.+.++|||.|++|++|.- ++++++| +|.+.|..+++-| +..|+++
T Consensus 132 -----------l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~--~~~flSc 196 (745)
T KOG0301|consen 132 -----------LVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD--DSHFLSC 196 (745)
T ss_pred -----------hhcccCCcchheeeeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEec--CCCeEee
Confidence 2344779999999999999999999999999999986 7788888 6999999999986 5578999
Q ss_pred eCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367 369 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS 421 (465)
Q Consensus 369 s~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~ 421 (465)
+.||.|+.|++....+....+|+.-|.+++..+++..+++++.|++++||+..
T Consensus 197 sNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 197 SNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred cCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 99999999999888888899999999999988888999999999999999987
No 102
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.80 E-value=2.5e-18 Score=173.22 Aligned_cols=220 Identities=20% Similarity=0.283 Sum_probs=164.6
Q ss_pred hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCC-cccccCCCeEEeccCCCCceeEecCCce
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG-FGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (465)
-++.||...|++++||.+...++||+. +.|+||+..+.+++......... .........+..+...+.. .+
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel-------~v 438 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGEL-------QV 438 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCce-------EE
Confidence 356799999999999999888888765 67999999988877655443111 0111222222222222211 12
Q ss_pred eeec-CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCC-----CeE--------eEEecCCCceEEEEEcc
Q 012367 295 FQIE-ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-----NQC--------LNVFDHHNYVTCVQFNP 359 (465)
Q Consensus 295 ~~~~-~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~-----~~~--------l~~~~h~~~V~~i~fsp 359 (465)
|++. ...+.+..+|.+.|++++.+|++ .+++||.|++|++||..- +.. .+++.-.+.|.|+.++|
T Consensus 439 fdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp 518 (888)
T KOG0306|consen 439 FDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP 518 (888)
T ss_pred EEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC
Confidence 3332 34456677999999999999986 899999999999999631 111 13344677899999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEE-ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccc
Q 012367 360 IDDNYFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT 438 (465)
Q Consensus 360 ~~~~~l~sgs~Dg~I~iwd~~~~~~~-~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~ 438 (465)
|+++++.+-.|++|+||-+.+-+.. .+.+|.-+|.++..+||++.++||+.|.+|++|-++=+.- |.....
T Consensus 519 -dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDC-------HKS~fA 590 (888)
T KOG0306|consen 519 -DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC-------HKSFFA 590 (888)
T ss_pred -CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchh-------hhhhhc
Confidence 9999999999999999999987654 5899999999999999999999999999999998775433 223334
Q ss_pred cCCceeeEEEeec
Q 012367 439 SGNKITGIQGRIS 451 (465)
Q Consensus 439 ~~~~It~~~f~p~ 451 (465)
|...|.+++|.|.
T Consensus 591 HdDSvm~V~F~P~ 603 (888)
T KOG0306|consen 591 HDDSVMSVQFLPK 603 (888)
T ss_pred ccCceeEEEEccc
Confidence 5578999999995
No 103
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2.3e-19 Score=159.20 Aligned_cols=186 Identities=24% Similarity=0.375 Sum_probs=149.1
Q ss_pred hccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeee
Q 012367 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 297 (465)
Q Consensus 218 l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (465)
-..|++.|..+...-.|+.|||++.|++|+|+.+.+...
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~----------------------------------------- 45 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ----------------------------------------- 45 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-----------------------------------------
Confidence 357999999999988999999999999999999986421
Q ss_pred cCCcceeeeccccceEEEEec-C--CCEEEEEeCCCeEEEEeCCCCeEeEEe---cCCCceEEEEEccCC-CCEEEEEeC
Q 012367 298 EESPLQELHGHKGDVLDLAWS-N--SNYLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPID-DNYFISGSI 370 (465)
Q Consensus 298 ~~~~~~~~~gh~~~V~~l~~s-~--~~~l~s~s~DgtV~lWD~~~~~~l~~~---~h~~~V~~i~fsp~~-~~~l~sgs~ 370 (465)
.+++.++.||.++|..++|. | +++|++|+.||.|.||.-.+++-.+.. .|...|++|+|.|.+ +-.|++++.
T Consensus 46 -s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasS 124 (299)
T KOG1332|consen 46 -SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASS 124 (299)
T ss_pred -ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeC
Confidence 14577899999999999996 5 359999999999999999888543333 388999999999943 457899999
Q ss_pred CCcEEEEeCCCC-eEE---ecccCCCCeEEEEEeeC---C-----------CEEEEEEcCCcEEEEEecCCceeeeE-ee
Q 012367 371 DGKVRIWGVCEK-RVV---DWADVRDVISAICYIPD---G-----------KGFIVGSITGTCHFYKASGNDLKLEK-VD 431 (465)
Q Consensus 371 Dg~I~iwd~~~~-~~~---~~~~~~~~V~sv~~spd---g-----------~~l~sgs~dG~v~iwd~~~~~~~~~~-~~ 431 (465)
||.|.|.+.+.. .-. ....|.-.|++++|.|. | +.|++|+.|..|+||+...+...++. +.
T Consensus 125 DG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~ 204 (299)
T KOG1332|consen 125 DGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLE 204 (299)
T ss_pred CCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhh
Confidence 999999998764 221 25668899999999996 5 56999999999999999987555442 32
Q ss_pred ecCcccccCCceeeEEEeec
Q 012367 432 FHDRKKTSGNKITGIQGRIS 451 (465)
Q Consensus 432 ~~~~~~~~~~~It~~~f~p~ 451 (465)
. +...+..++++|+
T Consensus 205 ~------H~dwVRDVAwaP~ 218 (299)
T KOG1332|consen 205 G------HKDWVRDVAWAPS 218 (299)
T ss_pred h------cchhhhhhhhccc
Confidence 2 3456666766665
No 104
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.79 E-value=7.4e-18 Score=173.69 Aligned_cols=185 Identities=21% Similarity=0.415 Sum_probs=154.5
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (465)
.|...|.+..|+ +.++++++.|.+|++|+..++...
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i------------------------------------------ 241 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLI------------------------------------------ 241 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEE------------------------------------------
Confidence 367778999998 458999999999999998875331
Q ss_pred CcceeeeccccceEEEEecC-CCEEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCCCcEEEE
Q 012367 300 SPLQELHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377 (465)
Q Consensus 300 ~~~~~~~gh~~~V~~l~~s~-~~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iw 377 (465)
...+.||.+.|.++++.. +++|++|+.|+++++||..+|+|...+. |.+.|.|+.. .+.++++|+.|.+|++|
T Consensus 242 --~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~---~~~~~~sgs~D~tVkVW 316 (537)
T KOG0274|consen 242 --LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI---DPFLLVSGSRDNTVKVW 316 (537)
T ss_pred --EeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc---cCceEeeccCCceEEEE
Confidence 233779999999999975 5799999999999999999999999995 9999999998 45889999999999999
Q ss_pred eCCCCeEEeccc-CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEee-----c
Q 012367 378 GVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRI-----S 451 (465)
Q Consensus 378 d~~~~~~~~~~~-~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p-----~ 451 (465)
++.++..+.... |...|+++.++ +.++++|+.||+|++||+.+++.. ..+.. +...|+++++.+ +
T Consensus 317 ~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl-~sl~g------H~~~V~sl~~~~~~~~~S 387 (537)
T KOG0274|consen 317 DVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCL-KSLSG------HTGRVYSLIVDSENRLLS 387 (537)
T ss_pred eccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceee-eeecC------CcceEEEEEecCcceEEe
Confidence 999999888555 99999999998 789999999999999999966553 23332 446777776665 5
Q ss_pred CCccc-eeeeec
Q 012367 452 KNYDN-FRRFQT 462 (465)
Q Consensus 452 gs~d~-~~~~~~ 462 (465)
|++|+ +++|+.
T Consensus 388 gs~D~~IkvWdl 399 (537)
T KOG0274|consen 388 GSLDTTIKVWDL 399 (537)
T ss_pred eeeccceEeecC
Confidence 88887 677764
No 105
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.79 E-value=1.8e-18 Score=163.76 Aligned_cols=202 Identities=20% Similarity=0.324 Sum_probs=153.2
Q ss_pred ccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCcee
Q 012367 208 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 287 (465)
Q Consensus 208 ~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (465)
.........+|.||++.|+++.|......+++|+.|.+|++||+....+....+..............+.-++. ...
T Consensus 247 nvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~-Dkk-- 323 (459)
T KOG0288|consen 247 NVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHF-DKK-- 323 (459)
T ss_pred eccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeeccc-ccc--
Confidence 45566777899999999999999987777999999999999999987776655554433322222111111100 000
Q ss_pred EecCCceeee-cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-----CCCceEEEEEccC
Q 012367 288 VVIPDEVFQI-EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPI 360 (465)
Q Consensus 288 ~~~~~~~~~~-~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-----h~~~V~~i~fsp~ 360 (465)
...|++ ...+......| +.|+++..++++ .|++++.|.++.+.|+++......|. ....++.++|+|
T Consensus 324 ----vRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp- 397 (459)
T KOG0288|consen 324 ----VRFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP- 397 (459)
T ss_pred ----eEEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC-
Confidence 112332 23445555555 499999999886 78899999999999999998888874 344589999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEe-ccc-C-CCCeEEEEEeeCCCEEEEEEcCCcEEEE
Q 012367 361 DDNYFISGSIDGKVRIWGVCEKRVVD-WAD-V-RDVISAICYIPDGKGFIVGSITGTCHFY 418 (465)
Q Consensus 361 ~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~-~-~~~V~sv~~spdg~~l~sgs~dG~v~iw 418 (465)
++.|+++||.||.|+||++.++++.. ... + ...|++++|+|.|.+|++++.++.+.+|
T Consensus 398 d~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 398 DGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 99999999999999999999998875 222 2 3369999999999999999999999999
No 106
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.79 E-value=2.9e-18 Score=171.47 Aligned_cols=173 Identities=21% Similarity=0.415 Sum_probs=143.9
Q ss_pred CCCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcc
Q 012367 189 SEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFG 268 (465)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~ 268 (465)
.+.+.+..+++|.... +...++||+.+||++++-|.+ .++|||.|.+|++|.-.
T Consensus 116 iSgSWD~TakvW~~~~---------l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~---------------- 169 (745)
T KOG0301|consen 116 ISGSWDSTAKVWRIGE---------LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG---------------- 169 (745)
T ss_pred EecccccceEEecchh---------hhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCC----------------
Confidence 4456677777775443 334588999999999999988 89999999999999854
Q ss_pred cccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecC
Q 012367 269 SNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDH 348 (465)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h 348 (465)
+.++++.||++-|..+++-+++.++||+.||.|++|++.....+..++|
T Consensus 170 -------------------------------~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~gh 218 (745)
T KOG0301|consen 170 -------------------------------TLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGH 218 (745)
T ss_pred -------------------------------chhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeecc
Confidence 4578899999999999999998999999999999999954444444589
Q ss_pred CCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCC-CeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367 349 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRD-VISAICYIPDGKGFIVGSITGTCHFYKASG 422 (465)
Q Consensus 349 ~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~V~sv~~spdg~~l~sgs~dG~v~iwd~~~ 422 (465)
.+.|+++...+ ++..+++++.|++++||+.. .+.....|.. .|+++++-++|. +++|+.||.||||..+.
T Consensus 219 tn~vYsis~~~-~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 219 TNFVYSISMAL-SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred ceEEEEEEecC-CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 99999999777 88999999999999999977 4445444544 899999998885 68888999999998873
No 107
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=1.2e-17 Score=153.39 Aligned_cols=186 Identities=22% Similarity=0.325 Sum_probs=143.6
Q ss_pred CCCCCCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCC--EEEEEeCCCcEEEEecCCceeeeeeecC
Q 012367 186 KPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTD 263 (465)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~--~LaSgs~Dg~V~iWd~~~~~~~~~~~~~ 263 (465)
+-..+.+.+.++.+. ++..-.....+..|.+.|+++.|.++-. .|++|++||.|.+|++...
T Consensus 54 ~~~aSGssDetI~IY-------Dm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W--------- 117 (362)
T KOG0294|consen 54 PYVASGSSDETIHIY-------DMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW--------- 117 (362)
T ss_pred eeEeccCCCCcEEEE-------eccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe---------
Confidence 334445555555544 3333344567778999999999999876 8999999999999999864
Q ss_pred CCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeE
Q 012367 264 DGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC 342 (465)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~ 342 (465)
..+..+.+|.+.|+.++++|.+ +.++.+.|+.+++||+-.|+.
T Consensus 118 ------------------------------------~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 118 ------------------------------------ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV 161 (362)
T ss_pred ------------------------------------EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence 3477888999999999999987 566999999999999977654
Q ss_pred eEEecCCCc----------------------------------------eEEEEEccCCCCEEEEEeCCCcEEEEeCCCC
Q 012367 343 LNVFDHHNY----------------------------------------VTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 382 (465)
Q Consensus 343 l~~~~h~~~----------------------------------------V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~ 382 (465)
-....-... +.|+.|. ++.++++|+.|+.|++||....
T Consensus 162 a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l--~~~~L~vG~d~~~i~~~D~ds~ 239 (362)
T KOG0294|consen 162 AFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL--DGSELLVGGDNEWISLKDTDSD 239 (362)
T ss_pred ceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec--CCceEEEecCCceEEEeccCCC
Confidence 333322222 3344443 5678999999999999999876
Q ss_pred eEEe-cccCCCCeEEEEEe--eCCCEEEEEEcCCcEEEEEecCCce
Q 012367 383 RVVD-WADVRDVISAICYI--PDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 383 ~~~~-~~~~~~~V~sv~~s--pdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
.+.. +.+|...|.++.+- |++.+|++++.||.|++||++..+.
T Consensus 240 ~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k 285 (362)
T KOG0294|consen 240 TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETK 285 (362)
T ss_pred ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccccc
Confidence 6554 78899999999843 6788999999999999999987643
No 108
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.78 E-value=1.7e-17 Score=148.74 Aligned_cols=197 Identities=17% Similarity=0.261 Sum_probs=150.0
Q ss_pred hhhhccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcc-----------cccCCCeEEeccCC
Q 012367 215 SQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFG-----------SNAKEGKIKFGKKK 282 (465)
Q Consensus 215 ~~~l~~H~~~I~~l~fspd-g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 282 (465)
.-...+|.+.|-.++|+|. ...||+++.|.+|++||+..+++..........+. .......+.+....
T Consensus 57 ~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r 136 (313)
T KOG1407|consen 57 ELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDAR 136 (313)
T ss_pred hhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEec
Confidence 3456799999999999985 45999999999999999988776654443322211 11111111100000
Q ss_pred -------------CCceeEecCCceeee-------------cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEE
Q 012367 283 -------------SSHVPVVIPDEVFQI-------------EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMW 335 (465)
Q Consensus 283 -------------~~~~~~~~~~~~~~~-------------~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lW 335 (465)
........++.+|-+ +-+|+..+++|.....||.|+|+| ++++|+.|..|.||
T Consensus 137 ~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLW 216 (313)
T KOG1407|consen 137 TYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLW 216 (313)
T ss_pred ccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeecc
Confidence 000000111111111 357888999999999999999986 99999999999999
Q ss_pred eCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcC
Q 012367 336 QVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT 412 (465)
Q Consensus 336 D~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~d 412 (465)
|+..--|++.| .+.-+|..|.|+. ++++||+||.|..|-|=++.+|..+....+.++...|+|+|....|+-++.|
T Consensus 217 D~~ELiC~R~isRldwpVRTlSFS~-dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 217 DVDELICERCISRLDWPVRTLSFSH-DGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ChhHhhhheeeccccCceEEEEecc-CcceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecC
Confidence 99999999999 4777999999999 9999999999999999999999999999999999999999999988887754
No 109
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.78 E-value=1.5e-17 Score=158.28 Aligned_cols=165 Identities=15% Similarity=0.269 Sum_probs=135.7
Q ss_pred chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (465)
Q Consensus 214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (465)
....+..|.++|+.+..+|.|.||++++.||+..+.|+.++...+....
T Consensus 295 ~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~------------------------------- 343 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD------------------------------- 343 (506)
T ss_pred CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee-------------------------------
Confidence 3455679999999999999999999999999999999988654332111
Q ss_pred eeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCC
Q 012367 294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID 371 (465)
Q Consensus 294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~D 371 (465)
.+..-.+++++|+||| .+.+|..|+.|++||+.++..+..| +|.++|..|+|+. +|.|+++++.|
T Consensus 344 ------------~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsE-NGY~Lat~add 410 (506)
T KOG0289|consen 344 ------------ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSE-NGYWLATAADD 410 (506)
T ss_pred ------------ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEecc-CceEEEEEecC
Confidence 0122357899999998 6679999999999999999999999 5999999999999 99999999999
Q ss_pred CcEEEEeCCCCeEEeccc--CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367 372 GKVRIWGVCEKRVVDWAD--VRDVISAICYIPDGKGFIVGSITGTCHFYKASG 422 (465)
Q Consensus 372 g~I~iwd~~~~~~~~~~~--~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~ 422 (465)
+.|++||++.-+...... ....|.+++|.+.|.+|+.++.|=.|++++-.+
T Consensus 411 ~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 411 GSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT 463 (506)
T ss_pred CeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccc
Confidence 999999999866554332 233699999999999999997776666666443
No 110
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.78 E-value=5.1e-17 Score=157.29 Aligned_cols=230 Identities=23% Similarity=0.365 Sum_probs=168.4
Q ss_pred hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCC--Ccc-cccCCCeEEeccCCCCceeEecCC
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG--GFG-SNAKEGKIKFGKKKSSHVPVVIPD 292 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 292 (465)
++..+|.+.|.+++.-.+|. |+||+.|..|..|| ...........++. .+. .......+.++...+......
T Consensus 281 k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt--- 355 (626)
T KOG2106|consen 281 KQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGT--- 355 (626)
T ss_pred eEeeecCCceEEEEEecCcc-EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEee---
Confidence 34449999999999999996 55599999999999 32222211111111 000 000011122222222111111
Q ss_pred ceeeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCC
Q 012367 293 EVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID 371 (465)
Q Consensus 293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~D 371 (465)
+...--....+|....+.++.+|+ +++++++.|++|+||+ ..++........++.|+.|+| .+ .+|.|...
T Consensus 356 ----~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhp-sg-~va~Gt~~ 427 (626)
T KOG2106|consen 356 ----LENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHP-SG-VVAVGTAT 427 (626)
T ss_pred ----ecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccC-cc-eEEEeecc
Confidence 112223456789999999999996 5999999999999999 677777777888999999999 77 99999999
Q ss_pred CcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec
Q 012367 372 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS 451 (465)
Q Consensus 372 g~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~ 451 (465)
|...+.|..+..++........+++++|+|+|.+||+|+.|+.|++|.++.+...+...... ++.+||.+.|+++
T Consensus 428 G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~-----~gs~ithLDwS~D 502 (626)
T KOG2106|consen 428 GRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC-----SGSPITHLDWSSD 502 (626)
T ss_pred ceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee-----cCceeEEeeecCC
Confidence 99999999998888866669999999999999999999999999999999888877654322 2378999999999
Q ss_pred CCcc------ceeeeecC
Q 012367 452 KNYD------NFRRFQTP 463 (465)
Q Consensus 452 gs~d------~~~~~~~p 463 (465)
++|- .-++++.|
T Consensus 503 s~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 503 SQFLVSNSGDYEILYWKP 520 (626)
T ss_pred CceEEeccCceEEEEEcc
Confidence 8873 34555565
No 111
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=1.5e-18 Score=172.26 Aligned_cols=189 Identities=15% Similarity=0.309 Sum_probs=153.4
Q ss_pred CcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccccc
Q 012367 192 PKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNA 271 (465)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~ 271 (465)
+.++.++.|........++. .....++.|.+.|+.+...-+|+.|+|+|.|-+|++|+......
T Consensus 44 GRDg~i~~W~~~~d~~~~s~-~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~--------------- 107 (735)
T KOG0308|consen 44 GRDGIIRLWSVTQDSNEPST-PYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT--------------- 107 (735)
T ss_pred CCCceEEEeccccccCCccc-chhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc---------------
Confidence 34455555544333322222 24678899999999999999999999999999999999875321
Q ss_pred CCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEe-cCC-CEEEEEeCCCeEEEEeCCCC--eEeEEe-
Q 012367 272 KEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAW-SNS-NYLLSCSMDKTVRMWQVGCN--QCLNVF- 346 (465)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~-s~~-~~l~s~s~DgtV~lWD~~~~--~~l~~~- 346 (465)
-+..++..|.+.|.|+++ .++ .+++||+-|+.|.|||+.++ +.+..+
T Consensus 108 ----------------------------~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n 159 (735)
T KOG0308|consen 108 ----------------------------FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN 159 (735)
T ss_pred ----------------------------hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc
Confidence 235567789999999999 454 48999999999999999987 333333
Q ss_pred ---------cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe-EEecccCCCCeEEEEEeeCCCEEEEEEcCCcEE
Q 012367 347 ---------DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCH 416 (465)
Q Consensus 347 ---------~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~-~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~ 416 (465)
++...|++++.++ .+..|++|+..+.|++||.++++ ++.+.+|++.|.++-.++||..+++++.||+|+
T Consensus 160 ~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIr 238 (735)
T KOG0308|consen 160 NVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIR 238 (735)
T ss_pred ccccccCCCCCccceeeeecCC-cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEE
Confidence 3667899999999 88999999999999999999865 556889999999999999999999999999999
Q ss_pred EEEecCCce
Q 012367 417 FYKASGNDL 425 (465)
Q Consensus 417 iwd~~~~~~ 425 (465)
+||+.-.+-
T Consensus 239 lWdLgqQrC 247 (735)
T KOG0308|consen 239 LWDLGQQRC 247 (735)
T ss_pred eeeccccce
Confidence 999975443
No 112
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.77 E-value=2.9e-18 Score=166.18 Aligned_cols=200 Identities=19% Similarity=0.376 Sum_probs=143.2
Q ss_pred hhccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367 217 EIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (465)
Q Consensus 217 ~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (465)
.-+||...++|.+|+|..+ .++|++.||++||||+.........+.+
T Consensus 263 nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~-------------------------------- 310 (641)
T KOG0772|consen 263 NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT-------------------------------- 310 (641)
T ss_pred ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEee--------------------------------
Confidence 4469999999999999766 8999999999999999874322111110
Q ss_pred eecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeE--eEEe--cCCC--ceEEEEEccCCCCEEEEE
Q 012367 296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC--LNVF--DHHN--YVTCVQFNPIDDNYFISG 368 (465)
Q Consensus 296 ~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~--l~~~--~h~~--~V~~i~fsp~~~~~l~sg 368 (465)
+...+..-.++.++|++++ .+++|..||.|.+|+...... ...+ .|.. .|+||.|++ ++++|++-
T Consensus 311 -------k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~-dg~~LlSR 382 (641)
T KOG0772|consen 311 -------KPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY-DGNYLLSR 382 (641)
T ss_pred -------ccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc-ccchhhhc
Confidence 0111344578899999986 788999999999999865432 2222 3665 899999999 99999999
Q ss_pred eCCCcEEEEeCCCC-eEE-ecccC--CCCeEEEEEeeCCCEEEEEEc------CCcEEEEEecCCceeeeEeeecCcccc
Q 012367 369 SIDGKVRIWGVCEK-RVV-DWADV--RDVISAICYIPDGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHDRKKT 438 (465)
Q Consensus 369 s~Dg~I~iwd~~~~-~~~-~~~~~--~~~V~sv~~spdg~~l~sgs~------dG~v~iwd~~~~~~~~~~~~~~~~~~~ 438 (465)
+.|+++++||++.- +.+ .+.+. .-.-+.++|+|+.+.|++|+. .|++.+||..+-...+ .+.+.+
T Consensus 383 g~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~-ki~i~~---- 457 (641)
T KOG0772|consen 383 GFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVY-KIDIST---- 457 (641)
T ss_pred cCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEE-EecCCC----
Confidence 99999999999863 333 34443 334678999999999999884 6789999987655543 333333
Q ss_pred cCCceeeEEEeec-------CCccceeeeecC
Q 012367 439 SGNKITGIQGRIS-------KNYDNFRRFQTP 463 (465)
Q Consensus 439 ~~~~It~~~f~p~-------gs~d~~~~~~~p 463 (465)
..+..++|+|- ....++++++-|
T Consensus 458 --aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 458 --ASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred --ceEEEEeecchhhheeeecCCCceEEEECc
Confidence 34555555543 233456666554
No 113
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=3e-17 Score=161.79 Aligned_cols=250 Identities=19% Similarity=0.303 Sum_probs=170.2
Q ss_pred cccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCC--cccc--cCCCeEEeccCC
Q 012367 207 MEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG--FGSN--AKEGKIKFGKKK 282 (465)
Q Consensus 207 ~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~ 282 (465)
+.-.+..+...+.||++.|+||...|.|.+||+|+.||+|+||.+.++.++......... +... .....+.++...
T Consensus 385 LrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~ 464 (733)
T KOG0650|consen 385 LRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGE 464 (733)
T ss_pred cCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecC
Confidence 333455566778999999999999999999999999999999999998877544332211 0000 000000000000
Q ss_pred C--------C---------ceeEecCC--------ceeeec-----CCcceeeeccccceEEEEecCCC-EEEEEeCC--
Q 012367 283 S--------S---------HVPVVIPD--------EVFQIE-----ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMD-- 329 (465)
Q Consensus 283 ~--------~---------~~~~~~~~--------~~~~~~-----~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~D-- 329 (465)
. + ......+. ..|.-. ..-++..-.|...|..+.|+..| +|++...+
T Consensus 465 ~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~ 544 (733)
T KOG0650|consen 465 CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG 544 (733)
T ss_pred ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence 0 0 00000000 011111 11244555788999999999765 88876554
Q ss_pred -CeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEE
Q 012367 330 -KTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGF 406 (465)
Q Consensus 330 -gtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l 406 (465)
..|.|+++........| ...+.|.++.|+| ...+|+.++ ...|||||+..+.++. +.....+|..++.+|.|..|
T Consensus 545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHP-s~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnl 622 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHP-SKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNL 622 (733)
T ss_pred cceEEEEecccccccCchhhcCCceeEEEecC-CCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeE
Confidence 67999999887777777 4677899999999 666666665 5789999999887765 56677889999999999999
Q ss_pred EEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCcccee
Q 012367 407 IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNYDNFR 458 (465)
Q Consensus 407 ~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~d~~~ 458 (465)
++|+.|+.+..||+.-+..++..+.+|.+.......-...-+..+++.|+..
T Consensus 623 i~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv 674 (733)
T KOG0650|consen 623 ILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTV 674 (733)
T ss_pred EEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcE
Confidence 9999999999999998888888777777433333333333334457777643
No 114
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.76 E-value=2.7e-17 Score=157.73 Aligned_cols=246 Identities=18% Similarity=0.289 Sum_probs=175.5
Q ss_pred hhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCC------C-Cccc---ccCCCeEEeccCCCC
Q 012367 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDD------G-GFGS---NAKEGKIKFGKKKSS 284 (465)
Q Consensus 215 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~------~-~~~~---~~~~~~~~~~~~~~~ 284 (465)
.+.+..|.-+|.||+++|++++.++++.||+|.=|++.++.......... . .... ......+.+......
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 45667899999999999999999999999999999998876442111110 0 0000 000111111111111
Q ss_pred -ceeEecCCc---eeee-cCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEE
Q 012367 285 -HVPVVIPDE---VFQI-EESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQF 357 (465)
Q Consensus 285 -~~~~~~~~~---~~~~-~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~f 357 (465)
+......+. +|.. ...+++.+.+|.+.|.+++|-.+ ..|++++.|++|++|++.....+.++ +|.+.|..|..
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Ida 294 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDA 294 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeech
Confidence 111111111 2222 34677889999999999999864 58999999999999999987776665 89999999988
Q ss_pred ccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCccc
Q 012367 358 NPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK 437 (465)
Q Consensus 358 sp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~ 437 (465)
.. -++.+-+|+.|+++++|++.......+.++.+.+-|++|-.+ ..+++|+.+|.|.+|++...+.....-..|+-..
T Consensus 295 L~-reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~ 372 (479)
T KOG0299|consen 295 LS-RERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIP 372 (479)
T ss_pred hc-ccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccC
Confidence 87 777788888999999999987777778899999999999865 4889999999999999987766544433343221
Q ss_pred c--cC---CceeeEEEeec------CCccc-eeeeec
Q 012367 438 T--SG---NKITGIQGRIS------KNYDN-FRRFQT 462 (465)
Q Consensus 438 ~--~~---~~It~~~f~p~------gs~d~-~~~~~~ 462 (465)
- +. ..|++++..|. |+.+. +|+|.+
T Consensus 373 ~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i 409 (479)
T KOG0299|consen 373 ELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKI 409 (479)
T ss_pred CccccccccceeeeEecccCceEEecCCCCceEEEEe
Confidence 1 11 38899977765 66654 788875
No 115
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.76 E-value=2.6e-17 Score=158.95 Aligned_cols=204 Identities=16% Similarity=0.215 Sum_probs=168.7
Q ss_pred CCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccc
Q 012367 191 KPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN 270 (465)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~ 270 (465)
....+.+++|.- ..-.+.+.+++|+..|++|.++-...|||+++..|-|.|..+.+.....
T Consensus 97 gG~~~~Vkiwdl-------~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt------------ 157 (673)
T KOG4378|consen 97 GGQSGCVKIWDL-------RAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTT------------ 157 (673)
T ss_pred cCcCceeeehhh-------HHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccc------------
Confidence 344556666643 3334456788999999999999999999999999999999988743211
Q ss_pred cCCCeEEeccCCCCceeEecCCceeeecCCcceeee-ccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeEEe-
Q 012367 271 AKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH-GHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF- 346 (465)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~~~- 346 (465)
+|. +....|.-+.|++.. +|.+++.+|+|.+||+....++..+
T Consensus 158 ---------------------------------~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~ 204 (673)
T KOG4378|consen 158 ---------------------------------TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHAS 204 (673)
T ss_pred ---------------------------------ceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchh
Confidence 111 112345578888863 7889999999999999988888877
Q ss_pred -cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 347 -DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 347 -~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
.|..+...|+|+|.+..+|++.+.|.+|.+||++............+.++|+|.++|.+|++|+..|.|..||++..+.
T Consensus 205 ~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 205 EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred hhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCC
Confidence 4999999999999999999999999999999999888877777788999999999999999999999999999999988
Q ss_pred eeeEeeecCcccccCCceeeEEEeecC
Q 012367 426 KLEKVDFHDRKKTSGNKITGIQGRISK 452 (465)
Q Consensus 426 ~~~~~~~~~~~~~~~~~It~~~f~p~g 452 (465)
++..+..|. ..|+.++|-|+.
T Consensus 285 Pv~v~sah~------~sVt~vafq~s~ 305 (673)
T KOG4378|consen 285 PVAVRSAHD------ASVTRVAFQPSP 305 (673)
T ss_pred CceEeeecc------cceeEEEeeecc
Confidence 888777766 459999888874
No 116
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=4.1e-17 Score=149.55 Aligned_cols=177 Identities=20% Similarity=0.323 Sum_probs=144.7
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (465)
-...|..|.|+|.+..|+.+++||++++|++....
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~--------------------------------------------- 46 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS--------------------------------------------- 46 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchh---------------------------------------------
Confidence 46779999999999999999999999999998631
Q ss_pred cceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCC
Q 012367 301 PLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 380 (465)
Q Consensus 301 ~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~ 380 (465)
+.....|..++++++|.+...+++|+.||.|+++|+.++.....-.|...|.||.+++ ....+++||.|++|++||.+
T Consensus 47 -l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R 124 (323)
T KOG1036|consen 47 -LKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPR 124 (323)
T ss_pred -hhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeec-cCCeEEEcccCccEEEEecc
Confidence 2222348899999999999899999999999999999998888888999999999999 88899999999999999999
Q ss_pred CCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec
Q 012367 381 EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS 451 (465)
Q Consensus 381 ~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~ 451 (465)
....+........|.++... |..|++|+.+..+.+||++....... .....-...+.++++.|+
T Consensus 125 ~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q-----~reS~lkyqtR~v~~~pn 188 (323)
T KOG1036|consen 125 NKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQ-----RRESSLKYQTRCVALVPN 188 (323)
T ss_pred ccccccccccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhh-----hccccceeEEEEEEEecC
Confidence 86666555566678777665 77999999999999999998766541 111111245666777773
No 117
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=1.6e-17 Score=158.71 Aligned_cols=163 Identities=23% Similarity=0.310 Sum_probs=139.2
Q ss_pred hccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367 218 IQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (465)
Q Consensus 218 l~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (465)
-++|+..|..|+|+.+-+ .|||||.|.+|++||+.++
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g------------------------------------------ 276 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG------------------------------------------ 276 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCC------------------------------------------
Confidence 358999999999988755 8999999999999999985
Q ss_pred ecCCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCC-eEeEEecCCCceEEEEEccCCCCEEEEEeCCCc
Q 012367 297 IEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCN-QCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK 373 (465)
Q Consensus 297 ~~~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~-~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~ 373 (465)
+|..++..|.+.|.++.|+|. ..|++|+.|++|.+.|.+.. ..-..+...+.|..++|+|.....|+++..||+
T Consensus 277 ---~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~ 353 (463)
T KOG0270|consen 277 ---KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGT 353 (463)
T ss_pred ---CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCce
Confidence 455666679999999999985 49999999999999999853 334445677889999999989999999999999
Q ss_pred EEEEeCCCC-e-EEecccCCCCeEEEEEeeCC-CEEEEEEcCCcEEEEEecCCce
Q 012367 374 VRIWGVCEK-R-VVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 374 I~iwd~~~~-~-~~~~~~~~~~V~sv~~spdg-~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
|+-+|+|.. + +.....|.+.|.++++++.- .++++++.|+.|++|++.....
T Consensus 354 v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 354 VYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred EEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence 999999864 4 44588899999999999854 4688899999999999986544
No 118
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.1e-16 Score=140.62 Aligned_cols=201 Identities=21% Similarity=0.357 Sum_probs=140.4
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (465)
.....|.+++|+|.|.+.|.|+...+++|............ ......|..
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~------------------------hea~~~pp~------ 79 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHA------------------------HEAAKQPPS------ 79 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccc------------------------cccccCCCe------
Confidence 45678999999999999999999999999865432110000 000000000
Q ss_pred CcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeE-----Ee-cCCCceEEEEEcc-------------
Q 012367 300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN-----VF-DHHNYVTCVQFNP------------- 359 (465)
Q Consensus 300 ~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~-----~~-~h~~~V~~i~fsp------------- 359 (465)
-..+.-+-|.+.|.|.+|+|.+ ++++|+.|++|++.-.....|.. .| -|.+.|..++|..
T Consensus 80 v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g 159 (350)
T KOG0641|consen 80 VLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG 159 (350)
T ss_pred EEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC
Confidence 0122334589999999999986 88899999999998654332211 12 2445555555532
Q ss_pred --------------------------------CCCCEEEEEeCCCcEEEEeCCCCeEEeccc--------CCCCeEEEEE
Q 012367 360 --------------------------------IDDNYFISGSIDGKVRIWGVCEKRVVDWAD--------VRDVISAICY 399 (465)
Q Consensus 360 --------------------------------~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~--------~~~~V~sv~~ 399 (465)
.++-.|++|+.|.+||+||++-...+...+ ....|.+++.
T Consensus 160 agdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~v 239 (350)
T KOG0641|consen 160 AGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV 239 (350)
T ss_pred CCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence 034579999999999999998776664222 1367999999
Q ss_pred eeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec------CCccce
Q 012367 400 IPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS------KNYDNF 457 (465)
Q Consensus 400 spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~------gs~d~~ 457 (465)
.|.|+.|++|-.|..|.+||++++..... +. .+...|..+.|+|+ ++||+-
T Consensus 240 dpsgrll~sg~~dssc~lydirg~r~iq~-f~------phsadir~vrfsp~a~yllt~syd~~ 296 (350)
T KOG0641|consen 240 DPSGRLLASGHADSSCMLYDIRGGRMIQR-FH------PHSADIRCVRFSPGAHYLLTCSYDMK 296 (350)
T ss_pred CCCcceeeeccCCCceEEEEeeCCceeee-eC------CCccceeEEEeCCCceEEEEecccce
Confidence 99999999999999999999999876432 22 24468999999998 566653
No 119
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=1.5e-17 Score=152.61 Aligned_cols=199 Identities=19% Similarity=0.326 Sum_probs=164.2
Q ss_pred ccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (465)
Q Consensus 212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (465)
....++|.||++.||.++.......+.|++.|.+-+||.++++
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg------------------------------------- 180 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG------------------------------------- 180 (481)
T ss_pred EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccc-------------------------------------
Confidence 3456788999999999999887779999999999999999975
Q ss_pred CceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeC------CC-------------------------
Q 012367 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV------GC------------------------- 339 (465)
Q Consensus 292 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~------~~------------------------- 339 (465)
.++..+.||.+.|++|+|++.+ +++++|.|++..||.. ..
T Consensus 181 --------~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~ 252 (481)
T KOG0300|consen 181 --------ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDS 252 (481)
T ss_pred --------cceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccccc
Confidence 4467788999999999999986 7889999999999972 11
Q ss_pred -----C----eEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEE
Q 012367 340 -----N----QCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIV 408 (465)
Q Consensus 340 -----~----~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~s 408 (465)
+ .++..+ +|...|.+..|-. .++.+++++.|++..+||+.++.++. +.+|....+.++-+|..+.+++
T Consensus 253 ~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvT 331 (481)
T KOG0300|consen 253 SEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVT 331 (481)
T ss_pred ccccCCceeeeeeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEE
Confidence 0 122333 4888899999998 99999999999999999999999987 8899999999999999999999
Q ss_pred EEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec-----CCccc-eeeeec
Q 012367 409 GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS-----KNYDN-FRRFQT 462 (465)
Q Consensus 409 gs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~-----gs~d~-~~~~~~ 462 (465)
.+.|-+.++||.+..-..... +++ +...+|+..|..+ |+.|. +.+|+.
T Consensus 332 sSrDtTFRLWDFReaI~sV~V--FQG----HtdtVTS~vF~~dd~vVSgSDDrTvKvWdL 385 (481)
T KOG0300|consen 332 SSRDTTFRLWDFREAIQSVAV--FQG----HTDTVTSVVFNTDDRVVSGSDDRTVKVWDL 385 (481)
T ss_pred eccCceeEeccchhhcceeee--ecc----cccceeEEEEecCCceeecCCCceEEEeee
Confidence 999999999999954332223 333 4478888888754 77776 566653
No 120
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.2e-18 Score=174.94 Aligned_cols=195 Identities=23% Similarity=0.437 Sum_probs=162.2
Q ss_pred hhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (465)
Q Consensus 215 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (465)
.+.+.+|...|.|+..-..++.+++|+.|..+.+|.+...
T Consensus 21 ~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp---------------------------------------- 60 (825)
T KOG0267|consen 21 TREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP---------------------------------------- 60 (825)
T ss_pred chhhhhhhhhhceeeeeccceeeccCCCceeeccccccCC----------------------------------------
Confidence 3677799999999999888899999999999999998753
Q ss_pred eeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCC
Q 012367 295 FQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG 372 (465)
Q Consensus 295 ~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg 372 (465)
.++..+.+|..+|.++.|++. .+|++|+.+|+|++||+..++.++++ +|...+..++|+| -+.|+++|+.|.
T Consensus 61 -----~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdt 134 (825)
T KOG0267|consen 61 -----NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHP-YGEFFASGSTDT 134 (825)
T ss_pred -----chhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeecc-ceEEeccccccc
Confidence 224457899999999999986 58889999999999999999988887 7999999999999 999999999999
Q ss_pred cEEEEeCC-CCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec
Q 012367 373 KVRIWGVC-EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS 451 (465)
Q Consensus 373 ~I~iwd~~-~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~ 451 (465)
.+++||++ .|....+.+|...|..+.|+|+|++++.|+.|.+++|||+..+++.. .+. ++..++..+.|.|.
T Consensus 135 d~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~-ef~------~~e~~v~sle~hp~ 207 (825)
T KOG0267|consen 135 DLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSK-EFK------SHEGKVQSLEFHPL 207 (825)
T ss_pred cceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccc-ccc------cccccccccccCch
Confidence 99999998 56666688899999999999999999999999999999998887632 222 22245555555554
Q ss_pred ------CCcc-ceeeeec
Q 012367 452 ------KNYD-NFRRFQT 462 (465)
Q Consensus 452 ------gs~d-~~~~~~~ 462 (465)
|+.| ++++|+.
T Consensus 208 e~Lla~Gs~d~tv~f~dl 225 (825)
T KOG0267|consen 208 EVLLAPGSSDRTVRFWDL 225 (825)
T ss_pred hhhhccCCCCceeeeecc
Confidence 4444 5677764
No 121
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=1.9e-17 Score=158.24 Aligned_cols=200 Identities=24% Similarity=0.403 Sum_probs=147.4
Q ss_pred CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceE
Q 012367 234 GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVL 313 (465)
Q Consensus 234 g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~ 313 (465)
|+|+|.|..|..|.|||+.-........ .++...+ +......+.-....+|+..|.
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~---------------~LGs~~s---------k~~~k~~k~~~~~~gHTdavl 247 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCV---------------TLGSKAS---------KKKKKKGKRSNSASGHTDAVL 247 (463)
T ss_pred cceEEEeccCceeEEeccccccccccce---------------eechhhh---------hhhhhhcccccccccchHHHH
Confidence 6799999999999999986432211110 0100000 000001112223457999999
Q ss_pred EEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCC-eEEeccc
Q 012367 314 DLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK-RVVDWAD 389 (465)
Q Consensus 314 ~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~-~~~~~~~ 389 (465)
+|+|+.. +.|+|||.|+||++||+.+++|...+. |...|.++.|+|..+.+|++|+.|++|++.|.+.. ..-....
T Consensus 248 ~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk 327 (463)
T KOG0270|consen 248 ALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK 327 (463)
T ss_pred HHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE
Confidence 9999864 699999999999999999999999997 77899999999999999999999999999999852 2222334
Q ss_pred CCCCeEEEEEeeCC-CEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC--------Cccceeee
Q 012367 390 VRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK--------NYDNFRRF 460 (465)
Q Consensus 390 ~~~~V~sv~~spdg-~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g--------s~d~~~~~ 460 (465)
..+.|-.++|.|.. ..+++++.||+|+-+|++....++.++..|. ..|+++.+++.. ....+.+|
T Consensus 328 ~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd------~~ISgl~~n~~~p~~l~t~s~d~~Vklw 401 (463)
T KOG0270|consen 328 FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHD------DEISGLSVNIQTPGLLSTASTDKVVKLW 401 (463)
T ss_pred eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEecc------CCcceEEecCCCCcceeeccccceEEEE
Confidence 56779999999965 5688888999999999998876666777776 578888777652 22446777
Q ss_pred ecC
Q 012367 461 QTP 463 (465)
Q Consensus 461 ~~p 463 (465)
..+
T Consensus 402 ~~~ 404 (463)
T KOG0270|consen 402 KFD 404 (463)
T ss_pred eec
Confidence 654
No 122
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=2.3e-17 Score=164.02 Aligned_cols=192 Identities=19% Similarity=0.344 Sum_probs=157.6
Q ss_pred CCcchhhHHhhccccccccccccchhhhccCCCcEEEEEE-CCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccc
Q 012367 191 KPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKF-SPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS 269 (465)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~f-spdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~ 269 (465)
.+.+..+++|...+.- -.+..+|..|++.|.|+++ .++..++||||-|+.|.+||+.++........
T Consensus 91 ~SsDtTVK~W~~~~~~-----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~------- 158 (735)
T KOG0308|consen 91 ASSDTTVKVWNAHKDN-----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASF------- 158 (735)
T ss_pred ecCCceEEEeecccCc-----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhc-------
Confidence 3445667777554432 3567889999999999999 88888999999999999999997532000000
Q ss_pred ccCCCeEEeccCCCCceeEecCCceeeecCCcceeee-ccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-
Q 012367 270 NAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF- 346 (465)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~- 346 (465)
.......+. |+...|.+++.++.+ .+++|+..+.+++||.++.+.+..+
T Consensus 159 ----------------------------n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr 210 (735)
T KOG0308|consen 159 ----------------------------NNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR 210 (735)
T ss_pred ----------------------------cccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeee
Confidence 001122222 889999999999876 7889999999999999998877666
Q ss_pred cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367 347 DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN 423 (465)
Q Consensus 347 ~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~ 423 (465)
+|.+.|.++..++ +|+.++++|.||+|++||+..++++. +..|...|+++..+|+=..+++|+.||.|..=|+++.
T Consensus 211 GHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 211 GHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ccccceEEEEEcC-CCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 7999999999999 99999999999999999999887765 7889999999999999999999999999999999874
No 123
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.75 E-value=4.7e-17 Score=148.70 Aligned_cols=189 Identities=22% Similarity=0.363 Sum_probs=140.0
Q ss_pred ccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (465)
Q Consensus 212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (465)
.+..+....|.++|.+++|+.+|..+++|+.|+.+++||+.+++
T Consensus 62 ~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q------------------------------------ 105 (347)
T KOG0647|consen 62 QLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ------------------------------------ 105 (347)
T ss_pred cccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC------------------------------------
Confidence 34446677899999999999999999999999999999999753
Q ss_pred CceeeecCCcceeeeccccceEEEEecCC---CEEEEEeCCCeEEEEeCCCCeEeEEecCCCc-----------------
Q 012367 292 DEVFQIEESPLQELHGHKGDVLDLAWSNS---NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY----------------- 351 (465)
Q Consensus 292 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~---~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~----------------- 351 (465)
+..+..|.++|..+.|-+. ..|+|||.|++|+.||+++..++.++...+.
T Consensus 106 ----------~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~ 175 (347)
T KOG0647|consen 106 ----------VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAE 175 (347)
T ss_pred ----------eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecC
Confidence 4455679999999999864 3799999999999999998766655433222
Q ss_pred -------------------------eEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeE---EecccCC---------CCe
Q 012367 352 -------------------------VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV---VDWADVR---------DVI 394 (465)
Q Consensus 352 -------------------------V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~---~~~~~~~---------~~V 394 (465)
+.||+..+ +...++.|+..|.+.|..+..+.. ..+.-|. -.|
T Consensus 176 r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~-d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaV 254 (347)
T KOG0647|consen 176 RHIAVYNLENPPTEFKRIESPLKWQTRCVACFQ-DKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAV 254 (347)
T ss_pred CcEEEEEcCCCcchhhhhcCcccceeeEEEEEe-cCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEe
Confidence 45666666 555567777777777777655311 1122222 248
Q ss_pred EEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc
Q 012367 395 SAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY 454 (465)
Q Consensus 395 ~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~ 454 (465)
++|+|+|.-..|++++.||++.+||-..... +... ..+..+|+...|..+|++
T Consensus 255 Nsi~FhP~hgtlvTaGsDGtf~FWDkdar~k-Lk~s------~~~~qpItcc~fn~~G~i 307 (347)
T KOG0647|consen 255 NSIAFHPVHGTLVTAGSDGTFSFWDKDARTK-LKTS------ETHPQPITCCSFNRNGSI 307 (347)
T ss_pred cceEeecccceEEEecCCceEEEecchhhhh-hhcc------CcCCCccceeEecCCCCE
Confidence 8899999989999999999999999764332 2111 223467888888877764
No 124
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.75 E-value=1.5e-17 Score=160.70 Aligned_cols=232 Identities=19% Similarity=0.378 Sum_probs=165.7
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEE---eccCCCCceeE--ecCCce
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIK---FGKKKSSHVPV--VIPDEV 294 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~ 294 (465)
+|..-|.++.+|...++++|||. |-|+|||+..... ..+.....+....+.+. +...+...+.. .....+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~----k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsi 491 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGN----KSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSI 491 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCC----CCccccccccCcccceeeeEecCCCceEEeccccceeee
Confidence 79999999999999999999998 6699999976421 11112222222222222 11111111110 011124
Q ss_pred eeecCCcc---eeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEe
Q 012367 295 FQIEESPL---QELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS 369 (465)
Q Consensus 295 ~~~~~~~~---~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs 369 (465)
|++..... .++..-.-....++.+|| +..++|..||.|.|||+.+...++.| +|.+.+.||.+++ +|..|-||+
T Consensus 492 WDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~-dGtklWTGG 570 (705)
T KOG0639|consen 492 WDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK-DGTKLWTGG 570 (705)
T ss_pred eeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC-CCceeecCC
Confidence 44432211 122222335567888998 47779999999999999999999999 5999999999999 999999999
Q ss_pred CCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEe
Q 012367 370 IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGR 449 (465)
Q Consensus 370 ~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~ 449 (465)
.|++||.||++.++.+........|.++.+.|++.+|++|-.++.+-+..... .+..++.+|. .-|.++.|.
T Consensus 571 lDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~sk--p~kyqlhlhe------ScVLSlKFa 642 (705)
T KOG0639|consen 571 LDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK--PEKYQLHLHE------SCVLSLKFA 642 (705)
T ss_pred CccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCC--ccceeecccc------cEEEEEEec
Confidence 99999999999998888788889999999999999999999999876665543 3333555555 568888887
Q ss_pred ecCCc------cc-eeeeecCCC
Q 012367 450 ISKNY------DN-FRRFQTPYT 465 (465)
Q Consensus 450 p~gs~------d~-~~~~~~p~~ 465 (465)
+.|.+ |+ +-.|-|||+
T Consensus 643 ~cGkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 643 YCGKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred ccCceeeecCchhhhhhccCccc
Confidence 77644 44 688999984
No 125
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=5.9e-17 Score=148.71 Aligned_cols=152 Identities=24% Similarity=0.357 Sum_probs=133.9
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCccee
Q 012367 225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 304 (465)
Q Consensus 225 I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (465)
-.|+.|++.|.+||.|..||.|.|||+.+. .+-+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~---------------------------------------------~iar~ 60 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF---------------------------------------------RIARM 60 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc---------------------------------------------chhhh
Confidence 789999999999999999999999999873 23456
Q ss_pred eeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccC-----------------------
Q 012367 305 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI----------------------- 360 (465)
Q Consensus 305 ~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~----------------------- 360 (465)
+.+|..+|++++|+++| +|+|+|.|..|.+||+..|.+++.+....+|+.++|+|.
T Consensus 61 lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~ 140 (405)
T KOG1273|consen 61 LSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK 140 (405)
T ss_pred hhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCc
Confidence 77899999999999986 899999999999999999999999887777777777762
Q ss_pred -----------------------CCCEEEEEeCCCcEEEEeCCCCeEEecccC--CCCeEEEEEeeCCCEEEEEEcCCcE
Q 012367 361 -----------------------DDNYFISGSIDGKVRIWGVCEKRVVDWADV--RDVISAICYIPDGKGFIVGSITGTC 415 (465)
Q Consensus 361 -----------------------~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~--~~~V~sv~~spdg~~l~sgs~dG~v 415 (465)
.|+|+++|...|.+.++|..+.+++..... ...|..+-++-.|+.|++-+.|..|
T Consensus 141 h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvI 220 (405)
T KOG1273|consen 141 HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVI 220 (405)
T ss_pred eeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceE
Confidence 356999999999999999999888874432 3678899999999999999999999
Q ss_pred EEEEec
Q 012367 416 HFYKAS 421 (465)
Q Consensus 416 ~iwd~~ 421 (465)
|.|++.
T Consensus 221 R~ye~~ 226 (405)
T KOG1273|consen 221 RTYEIS 226 (405)
T ss_pred EEEehh
Confidence 999987
No 126
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.4e-16 Score=153.25 Aligned_cols=196 Identities=18% Similarity=0.223 Sum_probs=155.5
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (465)
-.++|.|++-+|+|.||+.|+..|.|.+|.+.++.
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~--------------------------------------------- 114 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGI--------------------------------------------- 114 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEecccc---------------------------------------------
Confidence 46789999999999999999999999999999863
Q ss_pred cceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCC---------CCeEeEEe-cCCCceEEEEEccC-CCCEEEEE
Q 012367 301 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG---------CNQCLNVF-DHHNYVTCVQFNPI-DDNYFISG 368 (465)
Q Consensus 301 ~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~---------~~~~l~~~-~h~~~V~~i~fsp~-~~~~l~sg 368 (465)
.+..+.+|-..|+|+.|+.++ +++|||.||.|.+|.+- +-.++..| .|.-+|+.+...+. ...+++|+
T Consensus 115 LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~Ta 194 (476)
T KOG0646|consen 115 LLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTA 194 (476)
T ss_pred HHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEe
Confidence 355567899999999999876 99999999999999862 33567777 47779999988773 45689999
Q ss_pred eCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee-----EeeecCc----cccc
Q 012367 369 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-----KVDFHDR----KKTS 439 (465)
Q Consensus 369 s~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~-----~~~~~~~----~~~~ 439 (465)
|.|.++++||+..+.++........+.+++.+|.++.+++|+.+|.|.+.++....-+.. ....++. ...+
T Consensus 195 S~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh 274 (476)
T KOG0646|consen 195 SEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGH 274 (476)
T ss_pred cCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccc
Confidence 999999999999999998888899999999999999999999999999888764431110 0001110 1112
Q ss_pred C--CceeeEEEeecC------Cccc-eeeee
Q 012367 440 G--NKITGIQGRISK------NYDN-FRRFQ 461 (465)
Q Consensus 440 ~--~~It~~~f~p~g------s~d~-~~~~~ 461 (465)
. +.||.++++.+| ..|+ +.+|+
T Consensus 275 ~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 275 ENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred cCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 2 589999988874 4455 55554
No 127
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=3.5e-16 Score=161.19 Aligned_cols=230 Identities=20% Similarity=0.349 Sum_probs=162.0
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce--eee
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV--FQI 297 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 297 (465)
+|++.-+.|+|.|+|.+|+|++.||.|++|+..............+ .....++............+.+ +.+
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g-------~~v~~ia~~s~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISG-------ELVSSIACYSNHFLTGSEQNTVLRYKF 83 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccC-------ceeEEEeecccceEEeeccceEEEeeC
Confidence 8999999999999999999999999999999765421111110000 0011111111111111111111 222
Q ss_pred c-CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcE
Q 012367 298 E-ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKV 374 (465)
Q Consensus 298 ~-~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I 374 (465)
. ...-..+.-.+-++.+++++.+| +++.||.|-.|++-++.+....+.+ +|..+|.++.|+| .+++||+.+.||.|
T Consensus 84 ps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v 162 (933)
T KOG1274|consen 84 PSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKV 162 (933)
T ss_pred CCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC-CCCEEEEEecCceE
Confidence 1 11222333456789999999775 8999999999999999988877777 6999999999999 99999999999999
Q ss_pred EEEeCCCCeEEecc-c--------CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceee
Q 012367 375 RIWGVCEKRVVDWA-D--------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 445 (465)
Q Consensus 375 ~iwd~~~~~~~~~~-~--------~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~ 445 (465)
+|||+.++.+.... + ....+..++|+|+|..+++.+.|+.|.+|+..+...+.. +..+.. ...++.
T Consensus 163 ~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~---Lr~~~~--ss~~~~ 237 (933)
T KOG1274|consen 163 QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFK---LRDKLS--SSKFSD 237 (933)
T ss_pred EEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehee---eccccc--ccceEE
Confidence 99999988755321 1 245577899999999999999999999999998877544 222211 133999
Q ss_pred EEEeecCCccc-------eeeeec
Q 012367 446 IQGRISKNYDN-------FRRFQT 462 (465)
Q Consensus 446 ~~f~p~gs~d~-------~~~~~~ 462 (465)
++|+|.|.|-. +.+|++
T Consensus 238 ~~wsPnG~YiAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 238 LQWSPNGKYIAASTLDGQILVWNV 261 (933)
T ss_pred EEEcCCCcEEeeeccCCcEEEEec
Confidence 99999999842 566654
No 128
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.72 E-value=8.3e-17 Score=154.30 Aligned_cols=174 Identities=21% Similarity=0.372 Sum_probs=138.3
Q ss_pred cccccccchhhhccCCCcEEEEEECCCCC--EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCC
Q 012367 207 MEFTALYTSQEIQAHKGCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS 284 (465)
Q Consensus 207 ~~~~~~~~~~~l~~H~~~I~~l~fspdg~--~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (465)
+++..+...+.++-|.+.|++++|+|... ++|+|..-|.|-+||+.+...
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~---------------------------- 222 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK---------------------------- 222 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC----------------------------
Confidence 34455666778888999999999999654 899999999999999963211
Q ss_pred ceeEecCCceeeecCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCe---------------------
Q 012367 285 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQ--------------------- 341 (465)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~--------------------- 341 (465)
....+..+..|.++|.+|.|+|.+ .+++.|.||+|++-|+..+.
T Consensus 223 -------------d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~ 289 (498)
T KOG4328|consen 223 -------------DKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA 289 (498)
T ss_pred -------------ccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC
Confidence 012244566788899999998853 88899999999988865321
Q ss_pred ------------EeEEe-------------cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCC-----eEEecccCC
Q 012367 342 ------------CLNVF-------------DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK-----RVVDWADVR 391 (465)
Q Consensus 342 ------------~l~~~-------------~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~-----~~~~~~~~~ 391 (465)
....+ -|...|..++++|....+|+|+|.|++++|||++.- ..+....|.
T Consensus 290 e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hr 369 (498)
T KOG4328|consen 290 ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHR 369 (498)
T ss_pred CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccccc
Confidence 00111 156679999999999999999999999999999752 246678899
Q ss_pred CCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367 392 DVISAICYIPDGKGFIVGSITGTCHFYKAS 421 (465)
Q Consensus 392 ~~V~sv~~spdg~~l~sgs~dG~v~iwd~~ 421 (465)
..|.++.|+|+|-.|++.+.|..|+|||..
T Consensus 370 rsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 370 RSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred ceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 999999999998889999999999999985
No 129
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=9.7e-16 Score=140.47 Aligned_cols=239 Identities=23% Similarity=0.318 Sum_probs=153.5
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCcee----eeeeecCCCCcccccCCCeEEeccC--CCCceeEecCC
Q 012367 219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAA----SCKSFTDDGGFGSNAKEGKIKFGKK--KSSHVPVVIPD 292 (465)
Q Consensus 219 ~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 292 (465)
.+|.+-|+++.|.+.|+.+|||+.|++|+|||...... ........+.+ ..+..... +...+.+....
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si------~rV~WAhPEfGqvvA~cS~Dr 83 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSI------WRVVWAHPEFGQVVATCSYDR 83 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcE------EEEEecCccccceEEEEecCC
Confidence 48999999999999999999999999999999754321 11111111111 01111111 01111111111
Q ss_pred ceeeecC------------CcceeeeccccceEEEEecCC--C-EEEEEeCCCeEEEEeCCCC------eEeEEec----
Q 012367 293 EVFQIEE------------SPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCN------QCLNVFD---- 347 (465)
Q Consensus 293 ~~~~~~~------------~~~~~~~gh~~~V~~l~~s~~--~-~l~s~s~DgtV~lWD~~~~------~~l~~~~---- 347 (465)
.+-..++ ....++....+.|+++.|.|. | +|++++.||++|||+.-.. .....+.
T Consensus 84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~ 163 (361)
T KOG2445|consen 84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID 163 (361)
T ss_pred ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence 1111111 123455566789999999995 3 7999999999999987543 2223333
Q ss_pred ----CCCceEEEEEccC--CCCEEEEEeCC-----CcEEEEeCCCC--e---EEecccCCCCeEEEEEeeCC----CEEE
Q 012367 348 ----HHNYVTCVQFNPI--DDNYFISGSID-----GKVRIWGVCEK--R---VVDWADVRDVISAICYIPDG----KGFI 407 (465)
Q Consensus 348 ----h~~~V~~i~fsp~--~~~~l~sgs~D-----g~I~iwd~~~~--~---~~~~~~~~~~V~sv~~spdg----~~l~ 407 (465)
+.....|+.|+|. ...+|+.|+.+ +.++||..... + +..+.+|...|++++|.|+- ..|+
T Consensus 164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence 5667889999983 35688888865 48999987542 2 23477899999999999953 5799
Q ss_pred EEEcCCcEEEEEecC----------------CceeeeEeeecCcccc----cCCceeeEEEeecCCccceeeeecCC
Q 012367 408 VGSITGTCHFYKASG----------------NDLKLEKVDFHDRKKT----SGNKITGIQGRISKNYDNFRRFQTPY 464 (465)
Q Consensus 408 sgs~dG~v~iwd~~~----------------~~~~~~~~~~~~~~~~----~~~~It~~~f~p~gs~d~~~~~~~p~ 464 (465)
+++.|| |+||.+.. .+++++.+...+.... -.-.++|.-++.+|....+|+|...|
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 999999 99999984 1233333321111110 11345666777778888899998776
No 130
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=8.1e-16 Score=158.52 Aligned_cols=188 Identities=16% Similarity=0.246 Sum_probs=150.0
Q ss_pred hhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (465)
Q Consensus 217 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (465)
.|.--+-++++++|+-+|+++|.||.|-.|++-++...
T Consensus 91 iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~------------------------------------------ 128 (933)
T KOG1274|consen 91 ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS------------------------------------------ 128 (933)
T ss_pred eeeeeeccceEEEEecCCcEEEeecCceeEEEEecccc------------------------------------------
Confidence 34445678999999999999999999999999988753
Q ss_pred ecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec---------CCCceEEEEEccCCCCEEE
Q 012367 297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---------HHNYVTCVQFNPIDDNYFI 366 (465)
Q Consensus 297 ~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~---------h~~~V~~i~fsp~~~~~l~ 366 (465)
.....+.+|.++|+++.++|.+ +|++++.||+|++||+.++.+...+. ....+..++|+| ++..|+
T Consensus 129 ---s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la 204 (933)
T KOG1274|consen 129 ---SQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLA 204 (933)
T ss_pred ---chheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC-CCCeEE
Confidence 3466788999999999999975 89999999999999999988777663 234577899999 766677
Q ss_pred EEeCCCcEEEEeCCCCeEEe---cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCce
Q 012367 367 SGSIDGKVRIWGVCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI 443 (465)
Q Consensus 367 sgs~Dg~I~iwd~~~~~~~~---~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~I 443 (465)
..+.|+.|++|+..+..... ...+...+..+.|+|.|++||+++.||.|.|||+.+-.. |. ....|
T Consensus 205 ~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-------~~----~~~~V 273 (933)
T KOG1274|consen 205 VPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-------HE----FKRAV 273 (933)
T ss_pred eeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-------cc----cccee
Confidence 77789999999998866543 333555599999999999999999999999999987111 11 23568
Q ss_pred eeEEEeecCCccceeeee
Q 012367 444 TGIQGRISKNYDNFRRFQ 461 (465)
Q Consensus 444 t~~~f~p~gs~d~~~~~~ 461 (465)
+.+.|.|++.--++.-+.
T Consensus 274 c~~aw~p~~n~it~~~~~ 291 (933)
T KOG1274|consen 274 CCEAWKPNANAITLITAL 291 (933)
T ss_pred EEEecCCCCCeeEEEeec
Confidence 888888876665544443
No 131
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=3e-15 Score=137.93 Aligned_cols=211 Identities=17% Similarity=0.272 Sum_probs=150.3
Q ss_pred ccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCC
Q 012367 204 KKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKS 283 (465)
Q Consensus 204 ~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (465)
-+.+.+..-+..+-+.||+..|++|+.+|-+..++|++.|++|++||+....+.............-...+.+.......
T Consensus 82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGS 161 (311)
T ss_pred eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCC
Confidence 34555555566778899999999999999999999999999999999996655544433333322222222222111111
Q ss_pred CceeEecCCceeee---cCCcceeee---ccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCC---ce
Q 012367 284 SHVPVVIPDEVFQI---EESPLQELH---GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHN---YV 352 (465)
Q Consensus 284 ~~~~~~~~~~~~~~---~~~~~~~~~---gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~---~V 352 (465)
..+ ++|++ ...|..++. +-....+.|.|+|+| +++.+...+.+.+.|.-+|..+..|. +.. --
T Consensus 162 ~~I------kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~ 235 (311)
T KOG1446|consen 162 ELI------KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLP 235 (311)
T ss_pred CeE------EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcc
Confidence 111 11222 234555443 336788999999987 77788888999999999999888884 222 22
Q ss_pred EEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-ccc-CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367 353 TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGN 423 (465)
Q Consensus 353 ~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~-~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~ 423 (465)
...+|.| +++++++|+.||+|.+|++.++..+. +.+ +...+.++.|+|...+++++ +..+-+|=....
T Consensus 236 ~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 236 LSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDED 305 (311)
T ss_pred eeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEecccc
Confidence 5788999 99999999999999999999987765 666 68889999999986666655 556778865543
No 132
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.69 E-value=4.4e-16 Score=141.85 Aligned_cols=164 Identities=16% Similarity=0.297 Sum_probs=133.3
Q ss_pred ccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeee
Q 012367 219 QAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 297 (465)
Q Consensus 219 ~~H~~~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (465)
.+|+-.|.++.|-| |.-++.|+|-|.+++|||..+.+....+
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F------------------------------------- 140 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDF------------------------------------- 140 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEe-------------------------------------
Confidence 47999999999999 4448999999999999999885432111
Q ss_pred cCCcceeeeccccceEEEEecCC----CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCC
Q 012367 298 EESPLQELHGHKGDVLDLAWSNS----NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG 372 (465)
Q Consensus 298 ~~~~~~~~~gh~~~V~~l~~s~~----~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg 372 (465)
.-.+.|.+-+|+|= .++++|..|-.|++-|+.+|.+-+.+ +|.+.|.++.|+|..+-.|++|+.||
T Consensus 141 ---------~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg 211 (397)
T KOG4283|consen 141 ---------KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADG 211 (397)
T ss_pred ---------ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCc
Confidence 12345556667662 37888889999999999999999999 69999999999997777899999999
Q ss_pred cEEEEeCCC--CeEEe--------------cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367 373 KVRIWGVCE--KRVVD--------------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 428 (465)
Q Consensus 373 ~I~iwd~~~--~~~~~--------------~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~ 428 (465)
.||+||++. +.... -..|.+.|+.+||+.+|.++++++.|..+++|+...+.-.+.
T Consensus 212 ~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~ 283 (397)
T KOG4283|consen 212 AIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLR 283 (397)
T ss_pred eEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccccc
Confidence 999999964 22221 234778899999999999999999999999999987765443
No 133
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=3.1e-16 Score=147.55 Aligned_cols=204 Identities=21% Similarity=0.298 Sum_probs=157.1
Q ss_pred cccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec
Q 012367 211 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 290 (465)
Q Consensus 211 ~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (465)
..++.+.+.+|.|.|++|.||.++++||+||.|..+++|++.......
T Consensus 45 R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k-------------------------------- 92 (609)
T KOG4227|consen 45 RPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK-------------------------------- 92 (609)
T ss_pred cchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhc--------------------------------
Confidence 445667888999999999999999999999999999999987531110
Q ss_pred CCceeeecCCcceeee-ccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEecCCC---ceEEEEEccCCCCEE
Q 012367 291 PDEVFQIEESPLQELH-GHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHHN---YVTCVQFNPIDDNYF 365 (465)
Q Consensus 291 ~~~~~~~~~~~~~~~~-gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~---~V~~i~fsp~~~~~l 365 (465)
..+|+.... .|...|.|++|.-. .+|++|..+++|.+.|+.+.+.+.++.|.+ .|+.+..+| ..+.|
T Consensus 93 -------~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P-~DN~~ 164 (609)
T KOG4227|consen 93 -------TPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHP-TDNTL 164 (609)
T ss_pred -------CCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCC-CCceE
Confidence 124454443 35689999999865 489999999999999999999999998776 899999999 68999
Q ss_pred EEEeCCCcEEEEeCCCCe----EEecccCCCCeEEEEEeeC-CCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccC
Q 012367 366 ISGSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG 440 (465)
Q Consensus 366 ~sgs~Dg~I~iwd~~~~~----~~~~~~~~~~V~sv~~spd-g~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~ 440 (465)
++.+.++.|.+||.+..+ ++..........++-|+|- ...|++.+..|-+-+||++....++.+...........
T Consensus 165 ~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~ 244 (609)
T KOG4227|consen 165 IVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQEN 244 (609)
T ss_pred EEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccc
Confidence 999999999999998644 4445556677889999995 46788899999999999986655443221111111112
Q ss_pred CceeeEEEeecCCc
Q 012367 441 NKITGIQGRISKNY 454 (465)
Q Consensus 441 ~~It~~~f~p~gs~ 454 (465)
..-.++.|+|+|+.
T Consensus 245 ~~~M~~~~~~~G~Q 258 (609)
T KOG4227|consen 245 TEWMGSLWSPSGNQ 258 (609)
T ss_pred hhhhheeeCCCCCe
Confidence 33456777777754
No 134
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=4e-15 Score=136.57 Aligned_cols=213 Identities=18% Similarity=0.288 Sum_probs=158.0
Q ss_pred hhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEec
Q 012367 200 KQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFG 279 (465)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (465)
|...-+..++....+.+.+ .|.++|.+++|.++ ..+++|+.||.|+.+|+.++.
T Consensus 33 WDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~------------------------ 86 (323)
T KOG1036|consen 33 WDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGN------------------------ 86 (323)
T ss_pred ccCcEEEEeccchhhhhhe-ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCc------------------------
Confidence 3333333444444444444 69999999999974 579999999999999998742
Q ss_pred cCCCCceeEecCCceeeecCCcceeeeccccceEEEEecC-CCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEc
Q 012367 280 KKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFN 358 (465)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~-~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fs 358 (465)
...+..|...|.||..++ .+.+++||.|++|++||.+...+...+.....|.|+..
T Consensus 87 ----------------------~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v- 143 (323)
T KOG1036|consen 87 ----------------------EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV- 143 (323)
T ss_pred ----------------------ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEec-
Confidence 234456999999999997 47999999999999999998878888888889999988
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeEEe---cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCc-eeeeEeee--
Q 012367 359 PIDDNYFISGSIDGKVRIWGVCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND-LKLEKVDF-- 432 (465)
Q Consensus 359 p~~~~~l~sgs~Dg~I~iwd~~~~~~~~---~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~-~~~~~~~~-- 432 (465)
.++.|+.|+.|..|.+||+++..... -...+-.+++|++-|++..+++++.+|+|.+=.++... .+.....+
T Consensus 144 --~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkC 221 (323)
T KOG1036|consen 144 --SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKC 221 (323)
T ss_pred --cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEe
Confidence 67899999999999999999865443 34456779999999999999999999999876665541 11112222
Q ss_pred cCccc---ccCCceeeEEEeec------CCccceeeeecC
Q 012367 433 HDRKK---TSGNKITGIQGRIS------KNYDNFRRFQTP 463 (465)
Q Consensus 433 ~~~~~---~~~~~It~~~f~p~------gs~d~~~~~~~p 463 (465)
|.... ....+|.++.|+|- |.-|.+...|.+
T Consensus 222 Hr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 222 HRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred eecccCCceEEEEeceeEeccccceEEecCCCceEEEccC
Confidence 22111 12467888988885 444555444444
No 135
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=2.8e-15 Score=144.00 Aligned_cols=231 Identities=17% Similarity=0.263 Sum_probs=159.6
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceee--eeeecCCCCcccccCCCeEEeccCCCCceeEecCC---ce
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAAS--CKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD---EV 294 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 294 (465)
.-.+.|++|.|||....|++||.||+++||.+...... ........+ .....+...+...+....-. ..
T Consensus 211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fP------i~~a~f~p~G~~~i~~s~rrky~ys 284 (514)
T KOG2055|consen 211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFP------IQKAEFAPNGHSVIFTSGRRKYLYS 284 (514)
T ss_pred cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCc------cceeeecCCCceEEEecccceEEEE
Confidence 34678999999999999999999999999998753221 111111111 11111211111111111000 12
Q ss_pred eeec---CCcceeeeccc-cceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEe
Q 012367 295 FQIE---ESPLQELHGHK-GDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS 369 (465)
Q Consensus 295 ~~~~---~~~~~~~~gh~-~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs 369 (465)
|++. ..++..+.|+. ..+.....+++ ++|+..+..|.|.|....++..+..+...+.|..++|+. ++..|++.+
T Consensus 285 yDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsS-dsk~l~~~~ 363 (514)
T KOG2055|consen 285 YDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSS-DSKELLASG 363 (514)
T ss_pred eeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEec-CCcEEEEEc
Confidence 2222 23344455554 34556777776 599999999999999999999999999999999999998 889999988
Q ss_pred CCCcEEEEeCCCCeEEecccCCC--CeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce-----eeeEeeecCcccccCCc
Q 012367 370 IDGKVRIWGVCEKRVVDWADVRD--VISAICYIPDGKGFIVGSITGTCHFYKASGNDL-----KLEKVDFHDRKKTSGNK 442 (465)
Q Consensus 370 ~Dg~I~iwd~~~~~~~~~~~~~~--~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~ 442 (465)
.+|.|.+||++...++......+ .-+++|.+++|.+||+|+..|.|.|||..+... +...+. .-...
T Consensus 364 ~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d------NLtt~ 437 (514)
T KOG2055|consen 364 GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD------NLTTA 437 (514)
T ss_pred CCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh------hhhee
Confidence 99999999999988776333333 347788889999999999999999999653221 111111 12357
Q ss_pred eeeEEEeecCC---------ccceeeeecC
Q 012367 443 ITGIQGRISKN---------YDNFRRFQTP 463 (465)
Q Consensus 443 It~~~f~p~gs---------~d~~~~~~~p 463 (465)
|++++|++++. .+.+|++..|
T Consensus 438 Itsl~Fn~d~qiLAiaS~~~knalrLVHvP 467 (514)
T KOG2055|consen 438 ITSLQFNHDAQILAIASRVKKNALRLVHVP 467 (514)
T ss_pred eeeeeeCcchhhhhhhhhccccceEEEecc
Confidence 99999999854 3558898888
No 136
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.68 E-value=1.1e-15 Score=156.09 Aligned_cols=185 Identities=16% Similarity=0.211 Sum_probs=158.8
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCc
Q 012367 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 301 (465)
Q Consensus 222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (465)
...+++++.+++|++.+.|+..|+|-+|++.++-....+
T Consensus 448 ~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf----------------------------------------- 486 (910)
T KOG1539|consen 448 DINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSF----------------------------------------- 486 (910)
T ss_pred CcceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccc-----------------------------------------
Confidence 377999999999999999999999999999875332111
Q ss_pred ceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCC
Q 012367 302 LQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 380 (465)
Q Consensus 302 ~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~ 380 (465)
..-..|.++|++++...- ..++|++.+|.++.||......+..+.-...++++..+. ....++.+..|-.|+++|..
T Consensus 487 -~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr-~s~l~a~~~ddf~I~vvD~~ 564 (910)
T KOG1539|consen 487 -GDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHR-VSDLLAIALDDFSIRVVDVV 564 (910)
T ss_pred -ccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeee-hhhhhhhhcCceeEEEEEch
Confidence 011369999999999764 589999999999999999999899998888999999998 88889999999999999999
Q ss_pred CCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCccce
Q 012367 381 EKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNYDNF 457 (465)
Q Consensus 381 ~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~d~~ 457 (465)
+.++++ +.+|.+.|++++|+|||++|++++.|++|++||+.++.+. ..+.+ .+..+++.|+|+|.|..+
T Consensus 565 t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI-D~~~v-------d~~~~sls~SPngD~LAT 634 (910)
T KOG1539|consen 565 TRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI-DGLLV-------DSPCTSLSFSPNGDFLAT 634 (910)
T ss_pred hhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCccee-eeEec-------CCcceeeEECCCCCEEEE
Confidence 999887 7889999999999999999999999999999999988762 22222 257899999999998653
No 137
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=7.4e-16 Score=151.38 Aligned_cols=201 Identities=21% Similarity=0.351 Sum_probs=150.9
Q ss_pred CCcchhhHHhhcccc-ccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccc
Q 012367 191 KPKANKMEVKQNKKK-CMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS 269 (465)
Q Consensus 191 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~ 269 (465)
......+++|.-.+. ...-..+.+..++.+|.++|.|+++.+++.+++|||.||+|+.|++....-..
T Consensus 312 ~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~----------- 380 (577)
T KOG0642|consen 312 ASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPD----------- 380 (577)
T ss_pred eccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcc-----------
Confidence 345566666655221 11223455667889999999999999999999999999999999986311100
Q ss_pred ccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeE------
Q 012367 270 NAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQC------ 342 (465)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~------ 342 (465)
..+. .......+.||++.|+.+++|+. ..|++|+.||||++|+......
T Consensus 381 -----------------------ds~d-p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~ 436 (577)
T KOG0642|consen 381 -----------------------DSYD-PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEP 436 (577)
T ss_pred -----------------------cccC-cchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCc
Confidence 0000 01124567799999999999975 5799999999999998754332
Q ss_pred --------------------------------------eEEec--------CCCceEEEEEccCCCCEEEEEeCCCcEEE
Q 012367 343 --------------------------------------LNVFD--------HHNYVTCVQFNPIDDNYFISGSIDGKVRI 376 (465)
Q Consensus 343 --------------------------------------l~~~~--------h~~~V~~i~fsp~~~~~l~sgs~Dg~I~i 376 (465)
+..+. ....+.-+.++| ...+.+++..|+.|++
T Consensus 437 ~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~ 515 (577)
T KOG0642|consen 437 KEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRF 515 (577)
T ss_pred cccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceec
Confidence 00010 112356777888 7789999999999999
Q ss_pred EeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceee
Q 012367 377 WGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL 427 (465)
Q Consensus 377 wd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~ 427 (465)
+|..++.++. ...|...++++++.|+|-+|++|+.||.+++|.+......+
T Consensus 516 ~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 516 FDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred ccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheee
Confidence 9999998886 77899999999999999999999999999999987654443
No 138
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.66 E-value=1.8e-15 Score=151.85 Aligned_cols=201 Identities=19% Similarity=0.328 Sum_probs=144.9
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCc---------------ccccCCCeEEeccC---
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGF---------------GSNAKEGKIKFGKK--- 281 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~--- 281 (465)
+-.-.|++++.||+|++||+|..-|+++||++.+....+....+...+ .+......+.+...
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn 536 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN 536 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence 456679999999999999999999999999998755444333322221 11111221111110
Q ss_pred ----------CCCceeEecC--C-------------ceeeecC--Ccceeeecc-----ccceEEEEecCC-CEEEEEeC
Q 012367 282 ----------KSSHVPVVIP--D-------------EVFQIEE--SPLQELHGH-----KGDVLDLAWSNS-NYLLSCSM 328 (465)
Q Consensus 282 ----------~~~~~~~~~~--~-------------~~~~~~~--~~~~~~~gh-----~~~V~~l~~s~~-~~l~s~s~ 328 (465)
......+... + ..|.... .....+..| ...+.+|+..|. +++++++.
T Consensus 537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ 616 (1080)
T KOG1408|consen 537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ 616 (1080)
T ss_pred cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEec
Confidence 0111111110 0 0111110 001111112 246778888886 68999999
Q ss_pred CCeEEEEeCCCCeEeEEec----CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCC
Q 012367 329 DKTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDG 403 (465)
Q Consensus 329 DgtV~lWD~~~~~~l~~~~----h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg 403 (465)
|+.|+|||+.+++..+.|+ |.+....+...| .+.|+++.+.|.++.++|+.+++++. ..+|...|+.+.|.+|.
T Consensus 617 Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDC 695 (1080)
T KOG1408|consen 617 DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDC 695 (1080)
T ss_pred ccceEEEeccccceeeeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccc
Confidence 9999999999999999994 667888999999 99999999999999999999998875 88999999999999999
Q ss_pred CEEEEEEcCCcEEEEEec
Q 012367 404 KGFIVGSITGTCHFYKAS 421 (465)
Q Consensus 404 ~~l~sgs~dG~v~iwd~~ 421 (465)
+.|++.+.||+|.+|.+.
T Consensus 696 kHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 696 KHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred hhheeecCCceEEEEECc
Confidence 999999999999999986
No 139
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.1e-15 Score=145.78 Aligned_cols=177 Identities=25% Similarity=0.373 Sum_probs=136.2
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceee
Q 012367 226 WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQEL 305 (465)
Q Consensus 226 ~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (465)
.+++|+++|..||+|+.||++|||++... ..+...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~---------------------------------------------~t~l~e 182 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM---------------------------------------------LTILEE 182 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc---------------------------------------------hhhhhh
Confidence 78999999999999999999999998763 234455
Q ss_pred eccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec---CCCceEEEEEccCCC-----CEEEEEeCCCcEEE
Q 012367 306 HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDD-----NYFISGSIDGKVRI 376 (465)
Q Consensus 306 ~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~---h~~~V~~i~fsp~~~-----~~l~sgs~Dg~I~i 376 (465)
..|.+.|.+|.|+|++ +|++-+.| ..+||++.++.++.... .......+.|+. ++ ..++.-...+.|+.
T Consensus 183 ~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~ 260 (398)
T KOG0771|consen 183 IAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRL 260 (398)
T ss_pred HhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecc-cCCCceEEEEEecCCCCceeE
Confidence 6799999999999998 88899999 99999999997776664 233456777876 55 33344445567888
Q ss_pred EeCCCC------eEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEee
Q 012367 377 WGVCEK------RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRI 450 (465)
Q Consensus 377 wd~~~~------~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p 450 (465)
||+... +..........|++++.++||++++.|+.||.|-||+..+-+..+. -++.|...||+++|+|
T Consensus 261 ~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~------vk~aH~~~VT~ltF~P 334 (398)
T KOG0771|consen 261 CDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQY------VKEAHLGFVTGLTFSP 334 (398)
T ss_pred EEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEe------ehhhheeeeeeEEEcC
Confidence 776431 2222344566899999999999999999999999999876544322 2344667999999999
Q ss_pred cCCcc
Q 012367 451 SKNYD 455 (465)
Q Consensus 451 ~gs~d 455 (465)
+..|.
T Consensus 335 dsr~~ 339 (398)
T KOG0771|consen 335 DSRYL 339 (398)
T ss_pred CcCcc
Confidence 97764
No 140
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=2.2e-14 Score=143.68 Aligned_cols=197 Identities=15% Similarity=0.272 Sum_probs=154.6
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (465)
-..+|++|+|+.+.+.||.+-.||+|-||++...-.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~-------------------------------------------- 59 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF-------------------------------------------- 59 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCce--------------------------------------------
Confidence 356799999999999999999999999999986311
Q ss_pred cceeeecc-ccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCCCcEEEEe
Q 012367 301 PLQELHGH-KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 378 (465)
Q Consensus 301 ~~~~~~gh-~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd 378 (465)
....+.|+ ...|.+++|++++.|.|.+.+|+|.-||+.+.+.+..+. ..+.|++++.+| .+..++.|+.||.+..++
T Consensus 60 ~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s 138 (691)
T KOG2048|consen 60 LEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFS 138 (691)
T ss_pred eeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEe
Confidence 12233444 468999999999999999999999999999999998886 667999999999 889999999999888888
Q ss_pred CCCCeEEe---cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee-EeeecCcccccCCceeeEEEeecC--
Q 012367 379 VCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQGRISK-- 452 (465)
Q Consensus 379 ~~~~~~~~---~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~It~~~f~p~g-- 452 (465)
...+.+.. +...++.|.+++|+|++..+++|+.||.|++||+..+.-... ...+.+-.+....-+=+++|.-++
T Consensus 139 ~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI 218 (691)
T KOG2048|consen 139 IGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTI 218 (691)
T ss_pred cCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcE
Confidence 88887664 444568999999999999999999999999999987765442 333333333233445566665443
Q ss_pred ----Cccceeeeec
Q 012367 453 ----NYDNFRRFQT 462 (465)
Q Consensus 453 ----s~d~~~~~~~ 462 (465)
+-.++.+|+-
T Consensus 219 ~sgDS~G~V~FWd~ 232 (691)
T KOG2048|consen 219 ASGDSAGTVTFWDS 232 (691)
T ss_pred EEecCCceEEEEcc
Confidence 3344666653
No 141
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.64 E-value=1.4e-14 Score=131.78 Aligned_cols=210 Identities=17% Similarity=0.278 Sum_probs=140.7
Q ss_pred ccccchhhhc-cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceee-eeeecCCCCcccccCCCeEEeccCCCCcee
Q 012367 210 TALYTSQEIQ-AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAAS-CKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 287 (465)
Q Consensus 210 ~~~~~~~~l~-~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (465)
.++.+...|. .|-+.|.||.|.|++..||+-. |..|.+|++.+.... .......... .......-...........
T Consensus 110 ~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e-~~~~ftsg~WspHHdgnqv 187 (370)
T KOG1007|consen 110 STLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAE-MRHSFTSGAWSPHHDGNQV 187 (370)
T ss_pred chhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccccc-ccceecccccCCCCccceE
Confidence 3344444554 6677999999999999998877 788999999876552 2211111110 0000000001111111111
Q ss_pred Ee-cCCce--eeec--CCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCC-eEeEEe-cCCCceEEEEEc
Q 012367 288 VV-IPDEV--FQIE--ESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCN-QCLNVF-DHHNYVTCVQFN 358 (465)
Q Consensus 288 ~~-~~~~~--~~~~--~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~-~~l~~~-~h~~~V~~i~fs 358 (465)
.. ....+ |+.. .+....-.+|...|.++.|+|+. +|+||+.||.|++||.+.. .++..+ .|..+|+++.|+
T Consensus 188 ~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn 267 (370)
T KOG1007|consen 188 ATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFN 267 (370)
T ss_pred EEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEec
Confidence 11 11111 1211 12223345788899999999974 8999999999999999864 456666 699999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCC------------------------------CeEEecccCCCCeEEEEEee-CCCEEE
Q 012367 359 PIDDNYFISGSIDGKVRIWGVCE------------------------------KRVVDWADVRDVISAICYIP-DGKGFI 407 (465)
Q Consensus 359 p~~~~~l~sgs~Dg~I~iwd~~~------------------------------~~~~~~~~~~~~V~sv~~sp-dg~~l~ 407 (465)
|..+.++++||.|..|.+|-... +.+.++..|.+.|.+++|+. |.=.++
T Consensus 268 ~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFA 347 (370)
T KOG1007|consen 268 PEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFA 347 (370)
T ss_pred CccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEE
Confidence 99999999999999999995421 22335677999999999997 555688
Q ss_pred EEEcCCcEEEEEec
Q 012367 408 VGSITGTCHFYKAS 421 (465)
Q Consensus 408 sgs~dG~v~iwd~~ 421 (465)
+-++||++.|=.+.
T Consensus 348 SLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 348 SLSYDGRVIISSVP 361 (370)
T ss_pred EeccCceEEeecCC
Confidence 89999999876554
No 142
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.64 E-value=4.5e-14 Score=136.48 Aligned_cols=190 Identities=15% Similarity=0.149 Sum_probs=132.9
Q ss_pred hhhccCCCcEEEEEECCCCCEE-EEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~L-aSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (465)
+.+.+|.. +.+++|+|+|+.+ ++++.|+.|++||+.++...
T Consensus 25 ~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~------------------------------------- 66 (300)
T TIGR03866 25 RTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI------------------------------------- 66 (300)
T ss_pred EEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEE-------------------------------------
Confidence 44444544 6789999999976 67788999999998764321
Q ss_pred eeecCCcceeeeccccceEEEEecCCC-EE-EEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCC
Q 012367 295 FQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG 372 (465)
Q Consensus 295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l-~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg 372 (465)
..+..+. .+..++|+|++ .+ ++++.|+.|++||+.+++.+..+.+...+.+++|+| ++.++++++.++
T Consensus 67 --------~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~ 136 (300)
T TIGR03866 67 --------GTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSP-DGKIVVNTSETT 136 (300)
T ss_pred --------EeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECC-CCCEEEEEecCC
Confidence 1122222 24567888875 44 455678999999999998888887666788999999 999999988765
Q ss_pred -cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecCCceeeeEeeecCccc-ccCCceeeEEEe
Q 012367 373 -KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKK-TSGNKITGIQGR 449 (465)
Q Consensus 373 -~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~It~~~f~ 449 (465)
.+.+||..++...........+.+++|+|+|+.|++++ .+|.|++||+.+++... .+..+.... .......++.|+
T Consensus 137 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~s 215 (300)
T TIGR03866 137 NMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIK-KITFEIPGVHPEAVQPVGIKLT 215 (300)
T ss_pred CeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeee-eeeecccccccccCCccceEEC
Confidence 57788998887765434445678899999999886554 58999999999875432 222221100 011234467777
Q ss_pred ecCCc
Q 012367 450 ISKNY 454 (465)
Q Consensus 450 p~gs~ 454 (465)
|++.+
T Consensus 216 ~dg~~ 220 (300)
T TIGR03866 216 KDGKT 220 (300)
T ss_pred CCCCE
Confidence 77654
No 143
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.63 E-value=6e-15 Score=141.66 Aligned_cols=226 Identities=18% Similarity=0.295 Sum_probs=148.3
Q ss_pred CCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCCCC--
Q 012367 190 EKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGG-- 266 (465)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~-- 266 (465)
..++.+.+-+|.-.....+...+ ..+..|.++|.+|.|+|... .+++.|.||+|+.=|+++......+......
T Consensus 205 ~GdK~G~VG~Wn~~~~~~d~d~v---~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~ 281 (498)
T KOG4328|consen 205 VGDKGGQVGLWNFGTQEKDKDGV---YLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIW 281 (498)
T ss_pred EccCCCcEEEEecCCCCCccCce---EEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCcccee
Confidence 34455555555443222222222 34568999999999999654 8999999999999999875432222211000
Q ss_pred c---ccccCCCeEEeccCCCCceeEecCCceeee--cCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCC
Q 012367 267 F---GSNAKEGKIKFGKKKSSHVPVVIPDEVFQI--EESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGC 339 (465)
Q Consensus 267 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~ 339 (465)
+ ........+.++..-+ .. .+++. .+.....+.-|...|.+++++|-. +++|||.|++++|||++.
T Consensus 282 fs~~d~~~e~~~vl~~~~~G-~f------~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~ 354 (498)
T KOG4328|consen 282 FSSLDFSAESRSVLFGDNVG-NF------NVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQ 354 (498)
T ss_pred eeeccccCCCccEEEeeccc-ce------EEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhh
Confidence 0 0011111111111111 00 12222 223344556788899999999953 899999999999999975
Q ss_pred Ce-----EeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCC----CCeEEecccCC----CC--eEEEEEeeCCC
Q 012367 340 NQ-----CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC----EKRVVDWADVR----DV--ISAICYIPDGK 404 (465)
Q Consensus 340 ~~-----~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~----~~~~~~~~~~~----~~--V~sv~~spdg~ 404 (465)
-. .+..+.|...|.++.|+|.+++ |+|.+.|..|||||.. .-.......|. .+ ..-..|.|+..
T Consensus 355 l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~ 433 (498)
T KOG4328|consen 355 LRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYN 433 (498)
T ss_pred hcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCcc
Confidence 43 3556689999999999995565 9999999999999983 22222222222 22 34467999999
Q ss_pred EEEEEEcCCcEEEEEecCCcee
Q 012367 405 GFIVGSITGTCHFYKASGNDLK 426 (465)
Q Consensus 405 ~l~sgs~dG~v~iwd~~~~~~~ 426 (465)
++++|-.-..|-|||-.++++.
T Consensus 434 li~vg~~~r~IDv~~~~~~q~v 455 (498)
T KOG4328|consen 434 LIVVGRYPRPIDVFDGNGGQMV 455 (498)
T ss_pred EEEEeccCcceeEEcCCCCEEe
Confidence 9999999999999999887753
No 144
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.63 E-value=2.1e-15 Score=142.35 Aligned_cols=128 Identities=24% Similarity=0.356 Sum_probs=113.0
Q ss_pred eeeeccccceEEEEecC--CCEEEEEeCCCeEEEEeCCCCe-------EeEEe-cCCCceEEEEEccCCCCEEEEEeCCC
Q 012367 303 QELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQ-------CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG 372 (465)
Q Consensus 303 ~~~~gh~~~V~~l~~s~--~~~l~s~s~DgtV~lWD~~~~~-------~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg 372 (465)
-.+.||+++|++++|+| ++.++|||.|.+|+||++-.+. ++..+ +|...|--++|+|.-.+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 34569999999999998 5699999999999999986543 23333 69999999999999999999999999
Q ss_pred cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEe
Q 012367 373 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV 430 (465)
Q Consensus 373 ~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~ 430 (465)
+|.||++.++..+....|.+.|.+++|+-||..|++++.|..|||||.+++++..+..
T Consensus 155 ~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~ 212 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV 212 (472)
T ss_pred eEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc
Confidence 9999999999877656699999999999999999999999999999999998876653
No 145
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.63 E-value=2.9e-15 Score=152.95 Aligned_cols=155 Identities=23% Similarity=0.416 Sum_probs=134.4
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec
Q 012367 219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 298 (465)
Q Consensus 219 ~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (465)
.+|.++|+.++...-++.++|++.||.+++||..+.....
T Consensus 490 ~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~---------------------------------------- 529 (910)
T KOG1539|consen 490 PAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK---------------------------------------- 529 (910)
T ss_pred ccccCceeEEEecCCCceEEEccCcceEEEEecCCcceee----------------------------------------
Confidence 4899999999999889999999999999999998743211
Q ss_pred CCcceeeeccccceEEEEecC-CCEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEE
Q 012367 299 ESPLQELHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRI 376 (465)
Q Consensus 299 ~~~~~~~~gh~~~V~~l~~s~-~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~i 376 (465)
.+. -...+.++..+. .+.++.+..|-.|+++|+.+.+.++.| +|.+.|++++|+| +|+++++++.|++||+
T Consensus 530 -----~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~-DgrWlisasmD~tIr~ 602 (910)
T KOG1539|consen 530 -----SLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP-DGRWLISASMDSTIRT 602 (910)
T ss_pred -----eec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC-CCcEEEEeecCCcEEE
Confidence 111 123455666664 368888999999999999999999999 5999999999999 9999999999999999
Q ss_pred EeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcC-CcEEEEEe
Q 012367 377 WGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-GTCHFYKA 420 (465)
Q Consensus 377 wd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~d-G~v~iwd~ 420 (465)
||+.++.++.........+++.|+|+|.+||+...| .-|++|--
T Consensus 603 wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 603 WDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred EeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 999999999988899999999999999999999998 56889963
No 146
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.63 E-value=2.9e-15 Score=145.06 Aligned_cols=246 Identities=14% Similarity=0.243 Sum_probs=179.6
Q ss_pred CcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCC----c
Q 012367 192 PKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG----F 267 (465)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~----~ 267 (465)
....-+|+|.-..+-..++- .. -....-...|+++++.|||+.|++||+-.+|.|||+............... .
T Consensus 437 gGkgcVKVWdis~pg~k~Pv-sq-Ldcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyA 514 (705)
T KOG0639|consen 437 GGKGCVKVWDISQPGNKSPV-SQ-LDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYA 514 (705)
T ss_pred cCCCeEEEeeccCCCCCCcc-cc-ccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhh
Confidence 44556677755444222211 10 112234677999999999999999999999999999875443332222211 1
Q ss_pred ccccCCCeEEeccCCCCceeEecCCceeeec-CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEE
Q 012367 268 GSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE-ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV 345 (465)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~ 345 (465)
.....+.++.+.....+.+. +|++. ...++.|+||++.+.||.++++| .|.||+-|.+||-||++.+..+..
T Consensus 515 La~spDakvcFsccsdGnI~------vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqq 588 (705)
T KOG0639|consen 515 LAISPDAKVCFSCCSDGNIA------VWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ 588 (705)
T ss_pred hhcCCccceeeeeccCCcEE------EEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhh
Confidence 11222334444333333332 34442 34678899999999999999987 799999999999999999998888
Q ss_pred ecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 346 FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 346 ~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
......|.++.++| .+.+++.|-..+.+-|..........+..|...|.++.|.+-|+++++.+.|..+..|.+.-+..
T Consensus 589 hdF~SQIfSLg~cP-~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGas 667 (705)
T KOG0639|consen 589 HDFSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS 667 (705)
T ss_pred hhhhhhheecccCC-CccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccc
Confidence 88888999999999 99999999999999999988887778888999999999999999999999999999999876644
Q ss_pred eeeEeeecCcccccCCceeeEEEeecCCc
Q 012367 426 KLEKVDFHDRKKTSGNKITGIQGRISKNY 454 (465)
Q Consensus 426 ~~~~~~~~~~~~~~~~~It~~~f~p~gs~ 454 (465)
.++. . -...|++..++.++.|
T Consensus 668 iFqs---k-----E~SsVlsCDIS~ddky 688 (705)
T KOG0639|consen 668 IFQS---K-----ESSSVLSCDISFDDKY 688 (705)
T ss_pred eeec---c-----ccCcceeeeeccCceE
Confidence 3221 1 1245677766655433
No 147
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.63 E-value=8.9e-15 Score=146.73 Aligned_cols=194 Identities=24% Similarity=0.408 Sum_probs=148.4
Q ss_pred cchhhhccCCCcEEEEEECCCCCEEEEEeCCC-----cEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCcee
Q 012367 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDG-----VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 287 (465)
Q Consensus 213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg-----~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (465)
...+.|.||.-.|.|++.+|+|+++||+.... .|++|+..+.
T Consensus 516 PEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W--------------------------------- 562 (764)
T KOG1063|consen 516 PEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW--------------------------------- 562 (764)
T ss_pred hhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch---------------------------------
Confidence 34577889999999999999999999997643 5889988763
Q ss_pred EecCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeE-eE----EecCCCceEEEEEccCC
Q 012367 288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC-LN----VFDHHNYVTCVQFNPID 361 (465)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~-l~----~~~h~~~V~~i~fsp~~ 361 (465)
..++.+.+|.-.|+.|+|+|++ +|+++|.|.++.||....... -. .-.|..-|+++.|+| +
T Consensus 563 ------------~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p-d 629 (764)
T KOG1063|consen 563 ------------LQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP-D 629 (764)
T ss_pred ------------hhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCc-c
Confidence 3355788999999999999986 999999999999998854321 11 124888999999999 9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCe--EE---ecccCCCCeEEEEEee-----CCCEEEEEEcCCcEEEEEecCCceeee--E
Q 012367 362 DNYFISGSIDGKVRIWGVCEKR--VV---DWADVRDVISAICYIP-----DGKGFIVGSITGTCHFYKASGNDLKLE--K 429 (465)
Q Consensus 362 ~~~l~sgs~Dg~I~iwd~~~~~--~~---~~~~~~~~V~sv~~sp-----dg~~l~sgs~dG~v~iwd~~~~~~~~~--~ 429 (465)
+.+|+|+|.|.+|++|.....+ .+ ....+...|++++|.| .+..+++|...|.|.+|.......+.. .
T Consensus 630 e~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~ 709 (764)
T KOG1063|consen 630 EKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGT 709 (764)
T ss_pred cceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEeccccccccccee
Confidence 9999999999999999987762 22 2456889999999998 233789999999999999662222111 1
Q ss_pred eee---cCcccccCCceeeEEEeecC
Q 012367 430 VDF---HDRKKTSGNKITGIQGRISK 452 (465)
Q Consensus 430 ~~~---~~~~~~~~~~It~~~f~p~g 452 (465)
+.+ -.....+...|+.+.|.|.-
T Consensus 710 ~~~~~~l~~~~~~~~aV~rl~w~p~~ 735 (764)
T KOG1063|consen 710 FNLDTRLCATIGPDSAVNRLLWRPTC 735 (764)
T ss_pred eeeccccccccChHHhhheeEecccc
Confidence 111 12234456778888888763
No 148
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.62 E-value=8.1e-15 Score=135.53 Aligned_cols=186 Identities=24% Similarity=0.403 Sum_probs=142.9
Q ss_pred cCCCcEEEEEECCC----CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367 220 AHKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (465)
Q Consensus 220 ~H~~~I~~l~fspd----g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (465)
.|......++|+-+ ..+||.||.-|.|+|.|+.+.+
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~---------------------------------------- 126 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQ---------------------------------------- 126 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhh----------------------------------------
Confidence 47777788888654 3489999999999999998743
Q ss_pred eecCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeEEec----CCCceEEEEEccCCCCEEEEEe
Q 012367 296 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFISGS 369 (465)
Q Consensus 296 ~~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~~~~----h~~~V~~i~fsp~~~~~l~sgs 369 (465)
....+.||...|+.|.++|.+ +++++|.|.+||+|++++..|+..|+ |.+.|.++.|++ ++.+|++++
T Consensus 127 -----~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScG 200 (385)
T KOG1034|consen 127 -----CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCG 200 (385)
T ss_pred -----hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC-CCCeeeccC
Confidence 345677999999999999975 99999999999999999999999994 999999999999 999999999
Q ss_pred CCCcEEEEeCCCCeEE-----------------------e------cccCCCC---------------------------
Q 012367 370 IDGKVRIWGVCEKRVV-----------------------D------WADVRDV--------------------------- 393 (465)
Q Consensus 370 ~Dg~I~iwd~~~~~~~-----------------------~------~~~~~~~--------------------------- 393 (465)
.|..|++|++...+.. . ..-|...
T Consensus 201 mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgk 280 (385)
T KOG1034|consen 201 MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGK 280 (385)
T ss_pred CcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecch
Confidence 9999999999732100 0 0001111
Q ss_pred ---------------------------eE--EEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCcee
Q 012367 394 ---------------------------IS--AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 444 (465)
Q Consensus 394 ---------------------------V~--sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It 444 (465)
|. -.+|.|-++.||.|...|.|.+||++....+....-.+. ..+..|.
T Consensus 281 l~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s---~~~~tVR 357 (385)
T KOG1034|consen 281 LEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHS---KSGSTVR 357 (385)
T ss_pred hhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEec---cccceee
Confidence 11 134556677899999999999999998877533111121 2456788
Q ss_pred eEEEeecCCc
Q 012367 445 GIQGRISKNY 454 (465)
Q Consensus 445 ~~~f~p~gs~ 454 (465)
...|+-+|+.
T Consensus 358 Q~sfS~dgs~ 367 (385)
T KOG1034|consen 358 QTSFSRDGSI 367 (385)
T ss_pred eeeecccCcE
Confidence 8888888765
No 149
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=2.9e-14 Score=137.14 Aligned_cols=238 Identities=14% Similarity=0.206 Sum_probs=159.3
Q ss_pred hhhccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367 216 QEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (465)
|.+.--.-+|.+.+|+|+|+ .++++|.-..+.+||+.+.+........... ........+.......+.....+.+
T Consensus 251 qS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e---~~~~e~FeVShd~~fia~~G~~G~I 327 (514)
T KOG2055|consen 251 QSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVE---EKSMERFEVSHDSNFIAIAGNNGHI 327 (514)
T ss_pred eeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcc---cchhheeEecCCCCeEEEcccCceE
Confidence 44444578899999999999 9999999999999999876543222111110 0011111111111111111111111
Q ss_pred eee---cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCCCc--eEEEEEccCCCCEEEEE
Q 012367 295 FQI---EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNY--VTCVQFNPIDDNYFISG 368 (465)
Q Consensus 295 ~~~---~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~--V~~i~fsp~~~~~l~sg 368 (465)
..+ ....+..+. -.+.|.+++|+.++ .|++++.+|.|.+||+++..|++.|...+. -+.+|.++ ++.|||+|
T Consensus 328 ~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~-ng~ylA~G 405 (514)
T KOG2055|consen 328 HLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISL-NGSYLATG 405 (514)
T ss_pred Eeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecC-CCceEEec
Confidence 111 112222222 45789999999765 788888999999999999999999965443 36777778 99999999
Q ss_pred eCCCcEEEEeCCCC------eEE-ecccCCCCeEEEEEeeCCCEEEEEEc--CCcEEEEEecCCceeeeEeeecCccccc
Q 012367 369 SIDGKVRIWGVCEK------RVV-DWADVRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDFHDRKKTS 439 (465)
Q Consensus 369 s~Dg~I~iwd~~~~------~~~-~~~~~~~~V~sv~~spdg~~l~sgs~--dG~v~iwd~~~~~~~~~~~~~~~~~~~~ 439 (465)
|..|.|.|||..+. +++ .+......|+++.|+||++.|+.+|. +..+++-.+.+... +..+... .+.
T Consensus 406 S~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TV-FsNfP~~---n~~ 481 (514)
T KOG2055|consen 406 SDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTV-FSNFPTS---NTK 481 (514)
T ss_pred cCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceee-eccCCCC---CCc
Confidence 99999999997542 222 36667888999999999999988886 67888888776443 2233322 335
Q ss_pred CCceeeEEEeecCCcc-------ceeeeec
Q 012367 440 GNKITGIQGRISKNYD-------NFRRFQT 462 (465)
Q Consensus 440 ~~~It~~~f~p~gs~d-------~~~~~~~ 462 (465)
...++++.|+|.++|- ..++|..
T Consensus 482 vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 482 VGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred ccceEEEEecCCCceEEeecCCCceeeEee
Confidence 6789999999988773 2566654
No 150
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=2.5e-15 Score=146.93 Aligned_cols=170 Identities=21% Similarity=0.387 Sum_probs=135.5
Q ss_pred cccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCce
Q 012367 207 MEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHV 286 (465)
Q Consensus 207 ~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (465)
-.+..+...++|.||+|.|+|+.|+.+|.+|||||.|-.+.|||.-..
T Consensus 35 ~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~-------------------------------- 82 (758)
T KOG1310|consen 35 TWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY-------------------------------- 82 (758)
T ss_pred HHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhc--------------------------------
Confidence 345567778999999999999999999999999999999999998643
Q ss_pred eEecCCceeeecCCccee-eeccccceEEEEecC---CCEEEEEeCCCeEEEEeCCCC----------eEeEEe-cCCCc
Q 012367 287 PVVIPDEVFQIEESPLQE-LHGHKGDVLDLAWSN---SNYLLSCSMDKTVRMWQVGCN----------QCLNVF-DHHNY 351 (465)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~-~~gh~~~V~~l~~s~---~~~l~s~s~DgtV~lWD~~~~----------~~l~~~-~h~~~ 351 (465)
++++. -.||...|-+++|-| +.+++||+.|+.|+|+|+... ...+.+ .|...
T Consensus 83 -------------KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~r 149 (758)
T KOG1310|consen 83 -------------KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDR 149 (758)
T ss_pred -------------ceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhh
Confidence 23333 248999999999987 348999999999999999742 233334 38889
Q ss_pred eEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEE-----------ecccCCCCeEEEEEeeC-CCEEEEEEcCCcEEEEE
Q 012367 352 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV-----------DWADVRDVISAICYIPD-GKGFIVGSITGTCHFYK 419 (465)
Q Consensus 352 V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~-----------~~~~~~~~V~sv~~spd-g~~l~sgs~dG~v~iwd 419 (465)
|..|+-.|...+.|.+++.||+|+-+|++..... .....--...++..+|. ..+|++|+.|-..++||
T Consensus 150 VKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD 229 (758)
T KOG1310|consen 150 VKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYD 229 (758)
T ss_pred hhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhh
Confidence 9999999966699999999999999999863211 11222234678889985 46899999999999999
Q ss_pred ec
Q 012367 420 AS 421 (465)
Q Consensus 420 ~~ 421 (465)
.+
T Consensus 230 ~R 231 (758)
T KOG1310|consen 230 RR 231 (758)
T ss_pred hh
Confidence 54
No 151
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.60 E-value=1.5e-14 Score=133.41 Aligned_cols=190 Identities=19% Similarity=0.315 Sum_probs=151.5
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (465)
-..+|+|.+|++|++.+|.+-...-|.||.....+. .+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~------------------------------------------w~ 46 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL------------------------------------------WE 46 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCC------------------------------------------ce
Confidence 467899999999999999999999999998875321 24
Q ss_pred cceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCC-Ce---EeEEecCCCceEEEEEccCCCCEEEEEeCCCcEE
Q 012367 301 PLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGC-NQ---CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVR 375 (465)
Q Consensus 301 ~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~-~~---~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~ 375 (465)
+.+++..|...|+.++|+|. +.|++|+.|...+||.... +. .+-.+.++..++||.|+| .++.|++||....|.
T Consensus 47 ~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~is 125 (361)
T KOG1523|consen 47 PAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLIS 125 (361)
T ss_pred eceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecC-cCceEEeccCccEEE
Confidence 67888999999999999985 6999999999999999943 33 334447999999999999 999999999999999
Q ss_pred EEeCCCCeEE-----ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec-------------CCceeeeEeeecCccc
Q 012367 376 IWGVCEKRVV-----DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS-------------GNDLKLEKVDFHDRKK 437 (465)
Q Consensus 376 iwd~~~~~~~-----~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~-------------~~~~~~~~~~~~~~~~ 437 (465)
||-+....-- ....+...|+++.|+|++-.|++|+.|+.+++|..- +.++++-++... ..
T Consensus 126 Vcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E--~~ 203 (361)
T KOG1523|consen 126 VCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSE--AS 203 (361)
T ss_pred EEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHh--hc
Confidence 9988765432 234577889999999999999999999999999753 122222211111 11
Q ss_pred ccCCceeeEEEeecCCcc
Q 012367 438 TSGNKITGIQGRISKNYD 455 (465)
Q Consensus 438 ~~~~~It~~~f~p~gs~d 455 (465)
..+..+.++.|+|+|.-.
T Consensus 204 ~~ggwvh~v~fs~sG~~l 221 (361)
T KOG1523|consen 204 SSGGWVHGVLFSPSGNRL 221 (361)
T ss_pred cCCCceeeeEeCCCCCEe
Confidence 456899999999998643
No 152
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.60 E-value=1.4e-14 Score=144.13 Aligned_cols=163 Identities=24% Similarity=0.444 Sum_probs=128.4
Q ss_pred EEEECCC---CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcce
Q 012367 227 TLKFSPD---GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 303 (465)
Q Consensus 227 ~l~fspd---g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (465)
+..|++. .+.||.+.+||.|.++|..... |.++...+.
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~---------------------------------------fr~ee~~lk 94 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIV---------------------------------------FRLEERQLK 94 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhh---------------------------------------cchhhhhhc
Confidence 3667663 3489999999999999987531 122334466
Q ss_pred eeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEE---ecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeC
Q 012367 304 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV---FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379 (465)
Q Consensus 304 ~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~---~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~ 379 (465)
.+..|...|.++.|.|.. .|++++.|.++++||+.+..+... ++|...|.++||.|.+...|++|+.||.|.|||+
T Consensus 95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~ 174 (720)
T KOG0321|consen 95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC 174 (720)
T ss_pred ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence 677899999999999954 899999999999999999988776 4899999999999999999999999999999999
Q ss_pred CCCe----------------------------EEecccCCCCeEE---EEEeeCCCEEEEEEc-CCcEEEEEecCCceee
Q 012367 380 CEKR----------------------------VVDWADVRDVISA---ICYIPDGKGFIVGSI-TGTCHFYKASGNDLKL 427 (465)
Q Consensus 380 ~~~~----------------------------~~~~~~~~~~V~s---v~~spdg~~l~sgs~-dG~v~iwd~~~~~~~~ 427 (465)
+-.. ...+..+...|.+ +.+..|...||+++. |+.|+|||++.+.-.+
T Consensus 175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~ 254 (720)
T KOG0321|consen 175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAY 254 (720)
T ss_pred eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccc
Confidence 6322 0112333444555 556678889999888 9999999999776554
Q ss_pred e
Q 012367 428 E 428 (465)
Q Consensus 428 ~ 428 (465)
.
T Consensus 255 r 255 (720)
T KOG0321|consen 255 R 255 (720)
T ss_pred c
Confidence 4
No 153
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=7.9e-15 Score=144.21 Aligned_cols=194 Identities=19% Similarity=0.360 Sum_probs=148.7
Q ss_pred hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (465)
.++..|.+.|+.+.|+|....|++|+.||++++|++.......
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~------------------------------------- 330 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSA------------------------------------- 330 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCcc-------------------------------------
Confidence 3778899999999999999999999999999999994310000
Q ss_pred eecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCC------Ce----EeEEe-cCCCceEEEEEccCCCC
Q 012367 296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC------NQ----CLNVF-DHHNYVTCVQFNPIDDN 363 (465)
Q Consensus 296 ~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~------~~----~l~~~-~h~~~V~~i~fsp~~~~ 363 (465)
....+|+.+|.+|.++|.|+++.+.+ .+++|+.||+|+.|++.. .. ....+ +|.+.|+.+++++ ..+
T Consensus 331 ~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~ 409 (577)
T KOG0642|consen 331 EKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKD 409 (577)
T ss_pred ccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-ccc
Confidence 00236889999999999999998764 899999999999996531 11 12223 6999999999999 778
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEec--------------------------------------------c--------cCC
Q 012367 364 YFISGSIDGKVRIWGVCEKRVVDW--------------------------------------------A--------DVR 391 (465)
Q Consensus 364 ~l~sgs~Dg~I~iwd~~~~~~~~~--------------------------------------------~--------~~~ 391 (465)
.|++++.||+||+|+........+ . ...
T Consensus 410 ~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~ 489 (577)
T KOG0642|consen 410 RLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRY 489 (577)
T ss_pred ceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCccccc
Confidence 899999999999998744321000 0 001
Q ss_pred CCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc
Q 012367 392 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY 454 (465)
Q Consensus 392 ~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~ 454 (465)
..+.-+.++|.+.+.+++..|+.|+++|..++++... ...+...++++++.|+|-|
T Consensus 490 ~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s-------~~a~~~svtslai~~ng~~ 545 (577)
T KOG0642|consen 490 PQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS-------MVAHKDSVTSLAIDPNGPY 545 (577)
T ss_pred CccceEEecCCCCeeEecccCCceecccccccccchh-------eeeccceecceeecCCCce
Confidence 2366788899999999999999999999998877433 2223467899999988655
No 154
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.8e-14 Score=133.93 Aligned_cols=172 Identities=22% Similarity=0.333 Sum_probs=134.7
Q ss_pred ccccchhhhccCCCcEEEEEECC--CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCcee
Q 012367 210 TALYTSQEIQAHKGCIWTLKFSP--DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 287 (465)
Q Consensus 210 ~~~~~~~~l~~H~~~I~~l~fsp--dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (465)
......+.+++|.+.++.|+|.. .+..+.+|+.||+||+||+......
T Consensus 58 ~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~------------------------------ 107 (376)
T KOG1188|consen 58 GTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES------------------------------ 107 (376)
T ss_pred cchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh------------------------------
Confidence 34455678889999999999987 4668999999999999999874322
Q ss_pred EecCCceeeecCCcceeeeccc-cceEEEEec-CCCEEEEEeC----CCeEEEEeCCCCeE-eEEe--cCCCceEEEEEc
Q 012367 288 VVIPDEVFQIEESPLQELHGHK-GDVLDLAWS-NSNYLLSCSM----DKTVRMWQVGCNQC-LNVF--DHHNYVTCVQFN 358 (465)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~gh~-~~V~~l~~s-~~~~l~s~s~----DgtV~lWD~~~~~~-l~~~--~h~~~V~~i~fs 358 (465)
+...+.+|. .+-.+++.+ ..+.+++|.. |-.|.+||++..+. ++.+ .|.+.|++++|+
T Consensus 108 -------------a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFH 174 (376)
T KOG1188|consen 108 -------------ARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFH 174 (376)
T ss_pred -------------hheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEec
Confidence 122233343 355566665 3455555543 56799999998776 7766 499999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCC----eEEecccCCCCeEEEEEeeCC-CEEEEEEcCCcEEEEEecCCc
Q 012367 359 PIDDNYFISGSIDGKVRIWGVCEK----RVVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGND 424 (465)
Q Consensus 359 p~~~~~l~sgs~Dg~I~iwd~~~~----~~~~~~~~~~~V~sv~~spdg-~~l~sgs~dG~v~iwd~~~~~ 424 (465)
|.+.++|+|||.||.|.|||+... .+.....+...|..+.|..++ +.|.+-+..++..+|++..+.
T Consensus 175 P~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 175 PSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred CCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 999999999999999999999654 244567788889999999877 568888999999999998765
No 155
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.60 E-value=1e-14 Score=138.31 Aligned_cols=167 Identities=30% Similarity=0.539 Sum_probs=126.1
Q ss_pred chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (465)
Q Consensus 214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (465)
-...|..|..+|+++.|+|+|..||||+.+|.|.+|........ ...... .
T Consensus 57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~-----~~d~e~------------------------~ 107 (434)
T KOG1009|consen 57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF-----DADTEA------------------------D 107 (434)
T ss_pred EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc-----cccchh------------------------h
Confidence 34567899999999999999999999999999999987641110 000000 0
Q ss_pred eeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCC
Q 012367 294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID 371 (465)
Q Consensus 294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~D 371 (465)
...-.....+.+.+|...|.+++|+|++ ++++++.|.++++||+..|+.+..+ .|..+|..++|.| ..+|+++-+.|
T Consensus 108 ~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp-l~qyv~s~s~d 186 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP-LNQYVASKSSD 186 (434)
T ss_pred hCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecch-hhhhhhhhccC
Confidence 0000012245677899999999999975 8999999999999999999999988 5999999999999 99999999999
Q ss_pred CcEEEEeCCCCeEEeccc--------------------C----CCCeEEEEEeeCCCEEEEEE
Q 012367 372 GKVRIWGVCEKRVVDWAD--------------------V----RDVISAICYIPDGKGFIVGS 410 (465)
Q Consensus 372 g~I~iwd~~~~~~~~~~~--------------------~----~~~V~sv~~spdg~~l~sgs 410 (465)
...+++.+...+++...+ | ..-...++|+|||..+++..
T Consensus 187 r~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 187 RHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred cccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence 988888776544322111 1 11245679999999998865
No 156
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.59 E-value=3.5e-13 Score=130.27 Aligned_cols=194 Identities=11% Similarity=0.146 Sum_probs=123.0
Q ss_pred EEEEEECCCCCEEEE-EeCCCcEEEEecCCceeeeeeecCCCCcc-cccCCCeEE-eccCCCCceeEecCCceeeecC-C
Q 012367 225 IWTLKFSPDGRYLAS-GGEDGVVRIWHVTSVAASCKSFTDDGGFG-SNAKEGKIK-FGKKKSSHVPVVIPDEVFQIEE-S 300 (465)
Q Consensus 225 I~~l~fspdg~~LaS-gs~Dg~V~iWd~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~ 300 (465)
+..++|+|+++.+++ ++.|+.|++||+.+............... .....+... ........... +.... .
T Consensus 75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~------~d~~~~~ 148 (300)
T TIGR03866 75 PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHF------IDTKTYE 148 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEE------EeCCCCe
Confidence 467899999997755 45689999999987655433321111100 001111111 11111001111 11111 1
Q ss_pred cceeeeccccceEEEEecCCC-EE-EEEeCCCeEEEEeCCCCeEeEEecCC------C--ceEEEEEccCCCCEEEE-Ee
Q 012367 301 PLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHH------N--YVTCVQFNPIDDNYFIS-GS 369 (465)
Q Consensus 301 ~~~~~~gh~~~V~~l~~s~~~-~l-~s~s~DgtV~lWD~~~~~~l~~~~h~------~--~V~~i~fsp~~~~~l~s-gs 369 (465)
..... .....+..++|+|++ +| +++..++.|++||+.+++++..+... . ....++|+| ++++++. .+
T Consensus 149 ~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~ 226 (300)
T TIGR03866 149 IVDNV-LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALG 226 (300)
T ss_pred EEEEE-EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC-CCCEEEEEcC
Confidence 11111 122345678999886 45 45556999999999999887766411 1 235688999 8887544 45
Q ss_pred CCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecCCcee
Q 012367 370 IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLK 426 (465)
Q Consensus 370 ~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~~~~~ 426 (465)
.++.|.+||+.++++.....+...+.+++|+|+|+.|+++. .+|.|.+||+.+.+..
T Consensus 227 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~ 284 (300)
T TIGR03866 227 PANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVI 284 (300)
T ss_pred CCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence 56789999999888776555566899999999999998874 5899999999987653
No 157
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.59 E-value=1.2e-15 Score=155.45 Aligned_cols=119 Identities=32% Similarity=0.633 Sum_probs=104.0
Q ss_pred ccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (465)
Q Consensus 212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (465)
++..+.|.||..+|.|+.|...|.+++||+.|..|+||...+.
T Consensus 180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~------------------------------------- 222 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA------------------------------------- 222 (1113)
T ss_pred HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccch-------------------------------------
Confidence 4455778899999999999999999999999999999998764
Q ss_pred CceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEe
Q 012367 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS 369 (465)
Q Consensus 292 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs 369 (465)
.++....||.+.|++++.+..+ +++++|.|..|++|-+.++.++.++ +|.+.|++|+|+| +.+.+
T Consensus 223 --------~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP-----~~sss 289 (1113)
T KOG0644|consen 223 --------RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSP-----RASSS 289 (1113)
T ss_pred --------hhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCc-----cccCC
Confidence 3456677999999999998765 7889999999999999999999888 6999999999999 23777
Q ss_pred CCCcEEEEeCC
Q 012367 370 IDGKVRIWGVC 380 (465)
Q Consensus 370 ~Dg~I~iwd~~ 380 (465)
.||++++||.+
T Consensus 290 ~dgt~~~wd~r 300 (1113)
T KOG0644|consen 290 DDGTCRIWDAR 300 (1113)
T ss_pred CCCceEecccc
Confidence 88999999876
No 158
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=6.1e-15 Score=155.58 Aligned_cols=188 Identities=15% Similarity=0.248 Sum_probs=147.2
Q ss_pred hhhhccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367 215 SQEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (465)
Q Consensus 215 ~~~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (465)
..++.-|+|+|.++.|++... +||+|+.||.|.|||+.+.......
T Consensus 109 la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~--------------------------------- 155 (1049)
T KOG0307|consen 109 LATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP--------------------------------- 155 (1049)
T ss_pred HhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC---------------------------------
Confidence 355678999999999999655 9999999999999999873221100
Q ss_pred eeeecCCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEec-CCC--ceEEEEEccCCCCEEEEE
Q 012367 294 VFQIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHN--YVTCVQFNPIDDNYFISG 368 (465)
Q Consensus 294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~--~V~~i~fsp~~~~~l~sg 368 (465)
- -..-.+.|.+++|+.. ..|++++.+|.+.|||++..+.+-.+. +.. .+..++|+|.+...++++
T Consensus 156 --------~--~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~A 225 (1049)
T KOG0307|consen 156 --------G--SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVA 225 (1049)
T ss_pred --------C--CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeee
Confidence 0 1124578999999964 489999999999999999888777774 333 478999999777778888
Q ss_pred eCCC---cEEEEeCCCC--eEEecccCCCCeEEEEEeeCC-CEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCc
Q 012367 369 SIDG---KVRIWGVCEK--RVVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (465)
Q Consensus 369 s~Dg---~I~iwd~~~~--~~~~~~~~~~~V~sv~~spdg-~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 442 (465)
+.|. .|.+||+|.. .+..+.+|...|.++.|.+.+ .+|++++.|+.|.+|+..+++... .+.. .++.
T Consensus 226 s~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~-~~p~------~~nW 298 (1049)
T KOG0307|consen 226 SGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG-ELPA------QGNW 298 (1049)
T ss_pred cCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEee-ecCC------CCcc
Confidence 7764 6999999853 333467899999999999966 899999999999999999976643 2222 3478
Q ss_pred eeeEEEeecC
Q 012367 443 ITGIQGRISK 452 (465)
Q Consensus 443 It~~~f~p~g 452 (465)
+..++|+|..
T Consensus 299 ~fdv~w~pr~ 308 (1049)
T KOG0307|consen 299 CFDVQWCPRN 308 (1049)
T ss_pred eeeeeecCCC
Confidence 8999999863
No 159
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.59 E-value=1e-13 Score=134.71 Aligned_cols=174 Identities=20% Similarity=0.366 Sum_probs=139.6
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcc
Q 012367 223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 302 (465)
Q Consensus 223 ~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (465)
.-|.||+|.++|. ++||..+|.|.||+..+... .
T Consensus 247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~---------------------------------------------~ 280 (626)
T KOG2106|consen 247 KFVLCVTFLENGD-VITGDSGGNILIWSKGTNRI---------------------------------------------S 280 (626)
T ss_pred eEEEEEEEcCCCC-EEeecCCceEEEEeCCCceE---------------------------------------------E
Confidence 5699999999996 88999999999999865322 2
Q ss_pred eeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCC-----------------------------------------CCe
Q 012367 303 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVG-----------------------------------------CNQ 341 (465)
Q Consensus 303 ~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~-----------------------------------------~~~ 341 (465)
+....|.+.|.+++...+|.|+||+.|..|.+||-. ++-
T Consensus 281 k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f 360 (626)
T KOG2106|consen 281 KQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGF 360 (626)
T ss_pred eEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCc
Confidence 222378999999998888989999999999999821 111
Q ss_pred EeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367 342 CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS 421 (465)
Q Consensus 342 ~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~ 421 (465)
.+..+.|....+.++.+| +.+.++|++.|+.+++|+ ..++........++.++.|+|.| .+++|+..|...+.|..
T Consensus 361 ~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e 436 (626)
T KOG2106|consen 361 TLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTE 436 (626)
T ss_pred eEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecc
Confidence 223345888899999999 999999999999999999 56666666677889999999999 99999999999999998
Q ss_pred CCceeeeEeeecCcccccCCceeeEEEeecCCc
Q 012367 422 GNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY 454 (465)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~ 454 (465)
+..+.....+ ..+|+-+.|+|+|.+
T Consensus 437 ~~~lv~~~~d--------~~~ls~v~ysp~G~~ 461 (626)
T KOG2106|consen 437 TQDLVTIHTD--------NEQLSVVRYSPDGAF 461 (626)
T ss_pred cceeEEEEec--------CCceEEEEEcCCCCE
Confidence 8555433222 367999999999654
No 160
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.56 E-value=7.9e-14 Score=140.01 Aligned_cols=233 Identities=20% Similarity=0.296 Sum_probs=154.7
Q ss_pred cchhhhccCCCcEEEEEECCCCC---EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEe
Q 012367 213 YTSQEIQAHKGCIWTLKFSPDGR---YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 289 (465)
Q Consensus 213 ~~~~~l~~H~~~I~~l~fspdg~---~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (465)
....++.||++.|.+++|...+. +|||+|+|.+||||.+.-............ ...... ......
T Consensus 182 ~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~----------~t~~~~--~~~f~~ 249 (764)
T KOG1063|consen 182 ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDS----------LTTLSN--LPVFMI 249 (764)
T ss_pred eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccc----------cccccC--Cceeee
Confidence 34467899999999999988655 999999999999999864321110000000 000000 000000
Q ss_pred cCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeE-------EecC-CCceEEEEEccC
Q 012367 290 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN-------VFDH-HNYVTCVQFNPI 360 (465)
Q Consensus 290 ~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~-------~~~h-~~~V~~i~fsp~ 360 (465)
...-.+.+. ....+.||.+.|.++.|+|.+ .|+|+|+|+++.+|......-+. ..++ ...-+...|+|
T Consensus 250 l~~i~~~is--~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~- 326 (764)
T KOG1063|consen 250 LEEIQYRIS--FEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP- 326 (764)
T ss_pred eeeEEEEEe--hhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC-
Confidence 000001111 112345999999999999987 89999999999999886653221 1222 33578899999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCe----EEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcc
Q 012367 361 DDNYFISGSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK 436 (465)
Q Consensus 361 ~~~~l~sgs~Dg~I~iwd~~~~~----~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~ 436 (465)
+++.+++-+..|..++|...... .....+|...|+.|+|+|.|.+|++.+.|-+-|+|-.-+.+.....+ .+.
T Consensus 327 n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEi---aRP 403 (764)
T KOG1063|consen 327 NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEI---ARP 403 (764)
T ss_pred CCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeee---ccc
Confidence 99999999999999999943321 22367899999999999999999999999999999766444433333 233
Q ss_pred cccCCceeeEEEeec------CCccc-eeeeecC
Q 012367 437 KTSGNKITGIQGRIS------KNYDN-FRRFQTP 463 (465)
Q Consensus 437 ~~~~~~It~~~f~p~------gs~d~-~~~~~~p 463 (465)
..|+..++++.|.+. |-..+ +|++..|
T Consensus 404 QiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aP 437 (764)
T KOG1063|consen 404 QIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAP 437 (764)
T ss_pred ccccccceeeehccCCceeeecccceeeeeecCc
Confidence 345566666666652 22233 6777766
No 161
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.56 E-value=4.2e-13 Score=121.82 Aligned_cols=114 Identities=19% Similarity=0.435 Sum_probs=92.8
Q ss_pred cccceEEEEecCCC-E--EEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCC---CcEEEEeCCC
Q 012367 308 HKGDVLDLAWSNSN-Y--LLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---GKVRIWGVCE 381 (465)
Q Consensus 308 h~~~V~~l~~s~~~-~--l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~D---g~I~iwd~~~ 381 (465)
..++|.+++|+|++ . +++|..++.|.+||++ ++.+..+. ...+..|.|+| +|+++++|+.+ |.|.+||+++
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence 34579999999975 4 3445678899999997 66666665 46778999999 99999998764 5699999998
Q ss_pred CeEEecccCCCCeEEEEEeeCCCEEEEEEc------CCcEEEEEecCCce
Q 012367 382 KRVVDWADVRDVISAICYIPDGKGFIVGSI------TGTCHFYKASGNDL 425 (465)
Q Consensus 382 ~~~~~~~~~~~~V~sv~~spdg~~l~sgs~------dG~v~iwd~~~~~~ 425 (465)
.+.+....|.. ++.++|+|||++|++++. |+.++||+..+..+
T Consensus 135 ~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 135 KKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred CEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence 88887666654 789999999999999874 78899999986644
No 162
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=3.3e-13 Score=120.28 Aligned_cols=196 Identities=18% Similarity=0.318 Sum_probs=138.0
Q ss_pred hccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeee------eecCCCC-cccccCCCeEEeccCCCCceeEec
Q 012367 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCK------SFTDDGG-FGSNAKEGKIKFGKKKSSHVPVVI 290 (465)
Q Consensus 218 l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 290 (465)
.++|.++|+.|+|+ ..+|++|+. |.|+-|...+...... ...+... .......+.+.+....++......
T Consensus 58 eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG 134 (325)
T KOG0649|consen 58 EQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG 134 (325)
T ss_pred ccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecC
Confidence 47999999999998 347888775 9999999876433110 0001000 111122223333333333333332
Q ss_pred CCcee--eec-CCcceeeeccccceEEEEe-cCCCEEEEEeCCCeEEEEeCCCCeEeEEec---C--------CCceEEE
Q 012367 291 PDEVF--QIE-ESPLQELHGHKGDVLDLAW-SNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---H--------HNYVTCV 355 (465)
Q Consensus 291 ~~~~~--~~~-~~~~~~~~gh~~~V~~l~~-s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~---h--------~~~V~~i 355 (465)
...++ +++ ++..++++||++.|.++.- +..+.++||+.||+|||||.++++++..+. | ..+|.|+
T Consensus 135 D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigal 214 (325)
T KOG0649|consen 135 DGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGAL 214 (325)
T ss_pred CeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEE
Confidence 22233 233 4456789999999999997 456799999999999999999999988874 2 2357777
Q ss_pred EEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367 356 QFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG 422 (465)
Q Consensus 356 ~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~ 422 (465)
+. +..++++|+ ...+.+|.++..+..........|..+.|..| .+++++..+.|.-|.+.+
T Consensus 215 a~---~edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 215 AV---NEDWLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLVDFVDD--CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred ec---cCceEEecC-CCceeEEeccCCCceEEEecccceeEeeeecc--eEEEeccccceeeeeecc
Confidence 76 568888877 57799999999998888888899999999755 788888888899998875
No 163
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.55 E-value=7e-14 Score=127.42 Aligned_cols=188 Identities=16% Similarity=0.249 Sum_probs=145.0
Q ss_pred cCCCcEEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec
Q 012367 220 AHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 298 (465)
Q Consensus 220 ~H~~~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (465)
.|.+++++..|+. +-+++.+.|-|.++.|||++++..
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~------------------------------------------ 185 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS------------------------------------------ 185 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccc------------------------------------------
Confidence 5678999999987 566999999999999999987411
Q ss_pred CCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEe---c-CCCceEEEEEccCCCCEEEEEeCC-
Q 012367 299 ESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF---D-HHNYVTCVQFNPIDDNYFISGSID- 371 (465)
Q Consensus 299 ~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~---~-h~~~V~~i~fsp~~~~~l~sgs~D- 371 (465)
......+-+|...|.+++|..+ +.++|++.||.||++|++.-.--..+ . .+.+...++|++.+.+|+|+-..|
T Consensus 186 ~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS 265 (364)
T KOG0290|consen 186 GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDS 265 (364)
T ss_pred cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCC
Confidence 1123345689999999999985 48999999999999999875433322 2 356889999999999999987665
Q ss_pred CcEEEEeCCCC--eEEecccCCCCeEEEEEeeC-CCEEEEEEcCCcEEEEEecCCce-eee-EeeecCcccccCCceeeE
Q 012367 372 GKVRIWGVCEK--RVVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDL-KLE-KVDFHDRKKTSGNKITGI 446 (465)
Q Consensus 372 g~I~iwd~~~~--~~~~~~~~~~~V~sv~~spd-g~~l~sgs~dG~v~iwd~~~~~~-~~~-~~~~~~~~~~~~~~It~~ 446 (465)
..|.|.|++.. .+..+.+|...|++++|.|. ...|++++.|..+.+||+...-. ... .+- .-+.+..|..+
T Consensus 266 ~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil----ay~a~~EVNqi 341 (364)
T KOG0290|consen 266 NKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL----AYTAGGEVNQI 341 (364)
T ss_pred ceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh----hhhccceeeee
Confidence 57999999864 45569999999999999995 56899999999999999975433 111 111 11145678888
Q ss_pred EEeecCC
Q 012367 447 QGRISKN 453 (465)
Q Consensus 447 ~f~p~gs 453 (465)
++++...
T Consensus 342 ~Ws~~~~ 348 (364)
T KOG0290|consen 342 QWSSSQP 348 (364)
T ss_pred eecccCC
Confidence 9887644
No 164
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.55 E-value=6.6e-14 Score=139.39 Aligned_cols=165 Identities=21% Similarity=0.348 Sum_probs=124.7
Q ss_pred hccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeee
Q 012367 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 297 (465)
Q Consensus 218 l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (465)
..+|.+.|..++|-|....|++++.|.++++||+.+.....
T Consensus 96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G--------------------------------------- 136 (720)
T KOG0321|consen 96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVG--------------------------------------- 136 (720)
T ss_pred cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeec---------------------------------------
Confidence 35899999999999966699999999999999998754321
Q ss_pred cCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeE--------------------eEEe--------c
Q 012367 298 EESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQC--------------------LNVF--------D 347 (465)
Q Consensus 298 ~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~--------------------l~~~--------~ 347 (465)
...+.||.+.|.+++|.+.+ .+++|+.||.|.|||++.... .... .
T Consensus 137 ----~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 137 ----GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred ----ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 22466999999999999864 899999999999999864320 0000 1
Q ss_pred CCC----ceEEEEEccCCCCEEEEEeC-CCcEEEEeCCCCeEEe---------cccC---CCCeEEEEEeeCCCEEEEEE
Q 012367 348 HHN----YVTCVQFNPIDDNYFISGSI-DGKVRIWGVCEKRVVD---------WADV---RDVISAICYIPDGKGFIVGS 410 (465)
Q Consensus 348 h~~----~V~~i~fsp~~~~~l~sgs~-Dg~I~iwd~~~~~~~~---------~~~~---~~~V~sv~~spdg~~l~sgs 410 (465)
+.. .|+.+.| . |...||+++. |+.|+|||++...... +..| .-.+++++....|.+|.+.+
T Consensus 213 ~s~ti~ssvTvv~f-k-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC 290 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLF-K-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC 290 (720)
T ss_pred ccCceeeeeEEEEE-e-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe
Confidence 222 3555555 4 8889999888 9999999998754321 1222 34577888888889999999
Q ss_pred cCCcEEEEEecCCceee
Q 012367 411 ITGTCHFYKASGNDLKL 427 (465)
Q Consensus 411 ~dG~v~iwd~~~~~~~~ 427 (465)
.|++|++|++.+.....
T Consensus 291 tD~sIy~ynm~s~s~sP 307 (720)
T KOG0321|consen 291 TDNSIYFYNMRSLSISP 307 (720)
T ss_pred cCCcEEEEeccccCcCc
Confidence 99999999998765543
No 165
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.55 E-value=1.4e-13 Score=127.43 Aligned_cols=167 Identities=19% Similarity=0.338 Sum_probs=133.5
Q ss_pred hhhhccCCCcEEEEEECC-----CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEe
Q 012367 215 SQEIQAHKGCIWTLKFSP-----DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 289 (465)
Q Consensus 215 ~~~l~~H~~~I~~l~fsp-----dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (465)
.+....|+.+|..++|++ .-+.+||+|.+ .|.+|........+.
T Consensus 31 ~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~------------------------------ 79 (385)
T KOG1034|consen 31 NHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRL------------------------------ 79 (385)
T ss_pred eehhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceee------------------------------
Confidence 355668999999999985 23477887764 688888764221110
Q ss_pred cCCceeeecCCcceee--eccccceEEEEecC-----CCEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCC
Q 012367 290 IPDEVFQIEESPLQEL--HGHKGDVLDLAWSN-----SNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPID 361 (465)
Q Consensus 290 ~~~~~~~~~~~~~~~~--~gh~~~V~~l~~s~-----~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~ 361 (465)
++.+ ..|...-..++|+- +.+++.++.-|.|+|.|+.++++...+ +|...|+.|.|+|..
T Consensus 80 ------------lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~ 147 (385)
T KOG1034|consen 80 ------------LQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDR 147 (385)
T ss_pred ------------eeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCC
Confidence 0110 02455555667752 238999999999999999999998888 699999999999988
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEe----cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCc
Q 012367 362 DNYFISGSIDGKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 424 (465)
Q Consensus 362 ~~~l~sgs~Dg~I~iwd~~~~~~~~----~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~ 424 (465)
.++++++|.|..||+|++++..++. ..+|.+.|.++.|+++|.+|++++.|.++++|++....
T Consensus 148 ~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~ 214 (385)
T KOG1034|consen 148 PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKE 214 (385)
T ss_pred CcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhH
Confidence 9999999999999999999988776 45699999999999999999999999999999998433
No 166
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=2.7e-13 Score=124.99 Aligned_cols=190 Identities=18% Similarity=0.255 Sum_probs=130.8
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCC--cccccCCCeEEeccCCCCceeEecCC-cee
Q 012367 219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG--FGSNAKEGKIKFGKKKSSHVPVVIPD-EVF 295 (465)
Q Consensus 219 ~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 295 (465)
.-|.-.|-.+-..-++.||+|++.|.+|.+|++.. +......+.... .......+..... ..+.++ .+|
T Consensus 184 ~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkG-q~L~~idtnq~~n~~aavSP~GRFia~-------~gFTpDVkVw 255 (420)
T KOG2096|consen 184 RKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKG-QLLQSIDTNQSSNYDAAVSPDGRFIAV-------SGFTPDVKVW 255 (420)
T ss_pred hhcccceEEEeecCCceEEEEecCCCcEEEEecCC-ceeeeeccccccccceeeCCCCcEEEE-------ecCCCCceEE
Confidence 45778888888888999999999999999999984 333222221111 0111111111110 011111 122
Q ss_pred ee---------cCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCC-------CCeEeEEec-----CCCceE
Q 012367 296 QI---------EESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVG-------CNQCLNVFD-----HHNYVT 353 (465)
Q Consensus 296 ~~---------~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~-------~~~~l~~~~-----h~~~V~ 353 (465)
.+ +...+..+.||...|+.++|+|+ ..++|.|.||+++|||+. ..+.++++. ......
T Consensus 256 E~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~ 335 (420)
T KOG2096|consen 256 EPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV 335 (420)
T ss_pred EEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce
Confidence 22 23456678999999999999987 589999999999999984 223444441 223344
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe--cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEE
Q 012367 354 CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYK 419 (465)
Q Consensus 354 ~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~--~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd 419 (465)
.+..+| +++.|+... ...+++|..++++... -..|...|.+++|+|+|+++++++ |..++++.
T Consensus 336 RL~lsP-~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 336 RLELSP-SGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred EEEeCC-CCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 899999 998888765 6789999999988775 345899999999999999999986 55677765
No 167
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.54 E-value=2.1e-14 Score=139.02 Aligned_cols=175 Identities=17% Similarity=0.277 Sum_probs=142.0
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCccee
Q 012367 225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 304 (465)
Q Consensus 225 I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (465)
|.|+.+ ..|+++||..+.|+|||+... -..+.
T Consensus 85 v~~~s~---S~y~~sgG~~~~Vkiwdl~~k---------------------------------------------l~hr~ 116 (673)
T KOG4378|consen 85 VACASQ---SLYEISGGQSGCVKIWDLRAK---------------------------------------------LIHRF 116 (673)
T ss_pred Hhhhhc---ceeeeccCcCceeeehhhHHH---------------------------------------------HHhhh
Confidence 444444 479999999999999999842 12455
Q ss_pred eeccccceEEEEecC-CCEEEEEeCCCeEEEEeCCCCeEeEEecCC--CceEEEEEccCCCCEEEEEeCCCcEEEEeCCC
Q 012367 305 LHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 381 (465)
Q Consensus 305 ~~gh~~~V~~l~~s~-~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~--~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~ 381 (465)
+.+|+..|+++.++. |.+|++++..|.|.|..+.++.....|.|. ..|.-+.|+|....+|.+++.+|.|.+||+..
T Consensus 117 lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g 196 (673)
T KOG4378|consen 117 LKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG 196 (673)
T ss_pred ccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccC
Confidence 678999999999986 569999999999999999999988889765 35679999996666788899999999999988
Q ss_pred CeEEe--cccCCCCeEEEEEeeCC-CEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCcc
Q 012367 382 KRVVD--WADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNYD 455 (465)
Q Consensus 382 ~~~~~--~~~~~~~V~sv~~spdg-~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~d 455 (465)
...+. ...|..+...|||+|.. ..|++.+.|..|.+||+...+.. ..+.+ ..+.+.++|.++|.|.
T Consensus 197 ~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~-~~l~y-------~~Plstvaf~~~G~~L 265 (673)
T KOG4378|consen 197 MSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST-DRLTY-------SHPLSTVAFSECGTYL 265 (673)
T ss_pred CCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc-ceeee-------cCCcceeeecCCceEE
Confidence 76654 55699999999999954 67888999999999999865442 22222 3478899999998874
No 168
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=6e-13 Score=133.58 Aligned_cols=195 Identities=19% Similarity=0.352 Sum_probs=150.4
Q ss_pred ccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCcee
Q 012367 208 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 287 (465)
Q Consensus 208 ~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (465)
++..+.....+....++||+|+.+|.+..++.|++||.+...+........
T Consensus 96 Dl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~----------------------------- 146 (691)
T KOG2048|consen 96 DLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITY----------------------------- 146 (691)
T ss_pred ecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEE-----------------------------
Confidence 444555556677888999999999999999999999977777776543221
Q ss_pred EecCCceeeecCCcceeeeccccceEEEEecCCCE-EEEEeCCCeEEEEeCCCCeEeEEe-----c----CCCceEEEEE
Q 012367 288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNY-LLSCSMDKTVRMWQVGCNQCLNVF-----D----HHNYVTCVQF 357 (465)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~-l~s~s~DgtV~lWD~~~~~~l~~~-----~----h~~~V~~i~f 357 (465)
...+.-.++.|.+++|+|++. +++|+.||.|++||+.+++.+... + ...-|+++.|
T Consensus 147 --------------~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~ 212 (691)
T KOG2048|consen 147 --------------KRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLF 212 (691)
T ss_pred --------------EeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEE
Confidence 112223468999999999884 999999999999999999887732 1 2235888888
Q ss_pred ccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcc
Q 012367 358 NPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK 436 (465)
Q Consensus 358 sp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~ 436 (465)
-. ...|++|..-|+|.+||...+.++. ...|...|.+++..+++.++++++.|+.|.-|...+++.+ +...+.+
T Consensus 213 Lr--d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~---wv~~~~r 287 (691)
T KOG2048|consen 213 LR--DSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE---WVINSRR 287 (691)
T ss_pred ee--cCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc---eeeeccc
Confidence 74 6789999999999999999998886 6678999999999999999999999999999999887664 2222223
Q ss_pred cccCCceeeEEEee
Q 012367 437 KTSGNKITGIQGRI 450 (465)
Q Consensus 437 ~~~~~~It~~~f~p 450 (465)
.-+...+.+++..+
T Consensus 288 ~~h~hdvrs~av~~ 301 (691)
T KOG2048|consen 288 DLHAHDVRSMAVIE 301 (691)
T ss_pred cCCcccceeeeeec
Confidence 33344455554443
No 169
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=1.6e-12 Score=119.83 Aligned_cols=210 Identities=17% Similarity=0.272 Sum_probs=140.8
Q ss_pred ccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccccc---CCCeEEeccCCCC
Q 012367 208 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNA---KEGKIKFGKKKSS 284 (465)
Q Consensus 208 ~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 284 (465)
+|......+.|.+|..+|.+++||++|+.|+|+|.|..|++||+..+.+......+.......- ..+..........
T Consensus 51 D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~s 130 (405)
T KOG1273|consen 51 DFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEES 130 (405)
T ss_pred EccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCC
Confidence 5666677889999999999999999999999999999999999998876554433322211111 0111110000000
Q ss_pred ceeEecCCceeeecCCcceeeeccc--c----ceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEecCC--CceEEE
Q 012367 285 HVPVVIPDEVFQIEESPLQELHGHK--G----DVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCV 355 (465)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~gh~--~----~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h~--~~V~~i 355 (465)
.. +..... +.+.+-... + .-.+..|.+. .++++|...|.+.++|..+.+|+..++.. ..|..|
T Consensus 131 p~-------vi~~s~-~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I 202 (405)
T KOG1273|consen 131 PV-------VIDFSD-PKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQI 202 (405)
T ss_pred cE-------EEEecC-CceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEE
Confidence 11 111111 222221111 0 0111235554 49999999999999999999999999633 588999
Q ss_pred EEccCCCCEEEEEeCCCcEEEEeCCC-------CeEEeccc-----CCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecC
Q 012367 356 QFNPIDDNYFISGSIDGKVRIWGVCE-------KRVVDWAD-----VRDVISAICYIPDGKGFIVGSI-TGTCHFYKASG 422 (465)
Q Consensus 356 ~fsp~~~~~l~sgs~Dg~I~iwd~~~-------~~~~~~~~-----~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~ 422 (465)
.|+. .+++|+.-+.|+.||.|++.. +.+..... ....-.+++|+.+|.++++|+. ...++||....
T Consensus 203 ~~s~-~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~ 281 (405)
T KOG1273|consen 203 IVSR-KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSI 281 (405)
T ss_pred EEec-cCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCC
Confidence 9998 999999999999999999862 12211111 1223457899999999988886 46799999988
Q ss_pred Ccee
Q 012367 423 NDLK 426 (465)
Q Consensus 423 ~~~~ 426 (465)
+.+.
T Consensus 282 GsLV 285 (405)
T KOG1273|consen 282 GSLV 285 (405)
T ss_pred ccee
Confidence 8774
No 170
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.52 E-value=1.7e-13 Score=130.01 Aligned_cols=167 Identities=22% Similarity=0.372 Sum_probs=135.7
Q ss_pred CCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367 222 KGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (465)
Q Consensus 222 ~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (465)
..+|..+.|.++.. .|||||.|..|+||.+........ .. .-.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~-------------~~-----------------------~V~ 56 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG-------------DM-----------------------KVE 56 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCC-------------ce-----------------------eEE
Confidence 46799999999877 999999999999999875322100 00 012
Q ss_pred cceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCC--------C-----C---eEeEEe-cCCCceEEEEEccCCC
Q 012367 301 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG--------C-----N---QCLNVF-DHHNYVTCVQFNPIDD 362 (465)
Q Consensus 301 ~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~--------~-----~---~~l~~~-~h~~~V~~i~fsp~~~ 362 (465)
.+..+..|...|+++.|+|++ +|+||+.+|.|.+|-.. + . ...+.. .|...|+.++|+| ++
T Consensus 57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~ 135 (434)
T KOG1009|consen 57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DS 135 (434)
T ss_pred EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CC
Confidence 345677899999999999986 89999999999999765 2 1 122223 4889999999999 99
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 363 NYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 363 ~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
+++++|+.|+.+++||+..+++.. ..+|...|..++|.|-++++++-+.|...+.+.+.....
T Consensus 136 ~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~ 199 (434)
T KOG1009|consen 136 NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQV 199 (434)
T ss_pred ceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeee
Confidence 999999999999999999999887 778999999999999999999999998777777764433
No 171
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.52 E-value=8.2e-13 Score=133.02 Aligned_cols=155 Identities=16% Similarity=0.223 Sum_probs=117.8
Q ss_pred cceeeeccccceEEEEecC-C---CEEEEEeCCCeEEEEeCCCCe-EeEEe-cCCCceE---------------------
Q 012367 301 PLQELHGHKGDVLDLAWSN-S---NYLLSCSMDKTVRMWQVGCNQ-CLNVF-DHHNYVT--------------------- 353 (465)
Q Consensus 301 ~~~~~~gh~~~V~~l~~s~-~---~~l~s~s~DgtV~lWD~~~~~-~l~~~-~h~~~V~--------------------- 353 (465)
....+..|...|.|+.++. . .+|++++.|..|.|+|+...- ++.++ +|+..|+
T Consensus 493 ~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADks 572 (1080)
T KOG1408|consen 493 YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKS 572 (1080)
T ss_pred hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchh
Confidence 3455778999999999984 2 489999999999999986432 22232 2444444
Q ss_pred ----------------------------EEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-c---ccCCCCeEEEEEee
Q 012367 354 ----------------------------CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-W---ADVRDVISAICYIP 401 (465)
Q Consensus 354 ----------------------------~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~---~~~~~~V~sv~~sp 401 (465)
.++..| ...++++++.|+.|+|||+.+++... + .+|.+...-+...|
T Consensus 573 imFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP 651 (1080)
T KOG1408|consen 573 IMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP 651 (1080)
T ss_pred hheehhccccCceeccccccccccceEEEeeeCC-CcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECC
Confidence 444555 55689999999999999999988776 3 34667788899999
Q ss_pred CCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC-------CccceeeeecC
Q 012367 402 DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK-------NYDNFRRFQTP 463 (465)
Q Consensus 402 dg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g-------s~d~~~~~~~p 463 (465)
.|-++++.+.|.++.+||..++...- ++.. +.-.+||+.|.++- ....+-+|..|
T Consensus 652 SgiY~atScsdktl~~~Df~sgEcvA-~m~G------HsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 652 SGIYLATSCSDKTLCFVDFVSGECVA-QMTG------HSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred CccEEEEeecCCceEEEEeccchhhh-hhcC------cchheeeeeecccchhheeecCCceEEEEECc
Confidence 99999999999999999999886632 3333 34689999999883 33447777777
No 172
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.51 E-value=5.6e-13 Score=133.19 Aligned_cols=215 Identities=16% Similarity=0.266 Sum_probs=151.1
Q ss_pred ccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCC---------ceeeeeeecCCCCcccccCCCeE--
Q 012367 208 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS---------VAASCKSFTDDGGFGSNAKEGKI-- 276 (465)
Q Consensus 208 ~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~---------~~~~~~~~~~~~~~~~~~~~~~~-- 276 (465)
+...-...|+|+||++.|+|++|+.||+.+|||+.|..|.||.-.- ....|..+.+..+....+.....
T Consensus 39 D~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFgl 118 (1081)
T KOG1538|consen 39 DTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGL 118 (1081)
T ss_pred eCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccc
Confidence 3344556789999999999999999999999999999999998542 12233444433322111111111
Q ss_pred -------------------EeccCCCCceeEecCCceeeecC---Cc---ceeeeccccceEEEEecCC------CEEEE
Q 012367 277 -------------------KFGKKKSSHVPVVIPDEVFQIEE---SP---LQELHGHKGDVLDLAWSNS------NYLLS 325 (465)
Q Consensus 277 -------------------~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~gh~~~V~~l~~s~~------~~l~s 325 (465)
..+...+.+..+...++...+.. .+ +..-.|.+.+|.+++|+|. ..++.
T Consensus 119 WS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV 198 (1081)
T KOG1538|consen 119 WSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAV 198 (1081)
T ss_pred cChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEE
Confidence 11222233333333333333321 11 2233457889999999974 27888
Q ss_pred EeCCCeEEEEeCCCCeEeE-EecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCC
Q 012367 326 CSMDKTVRMWQVGCNQCLN-VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK 404 (465)
Q Consensus 326 ~s~DgtV~lWD~~~~~~l~-~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~ 404 (465)
.....|+..+.+. |+.+. .-.-.-...|+++.| +|.|+..|+.|+.+++|....-.+-+......+|++|+..|+++
T Consensus 199 ~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~-NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ 276 (1081)
T KOG1538|consen 199 ADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFT-NGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQ 276 (1081)
T ss_pred EeccceeEEEEec-ceeecccccCCCCchhheecc-CCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCc
Confidence 8888999998886 44443 333444667999999 99999999999999999877666667777889999999999999
Q ss_pred EEEEEEcCCcEEEEEecCCc
Q 012367 405 GFIVGSITGTCHFYKASGND 424 (465)
Q Consensus 405 ~l~sgs~dG~v~iwd~~~~~ 424 (465)
.++.|+.||+|-.|++-..+
T Consensus 277 ~v~~GCqDGTiACyNl~fST 296 (1081)
T KOG1538|consen 277 YVVVGCQDGTIACYNLIFST 296 (1081)
T ss_pred eEEEEEccCeeehhhhHHhH
Confidence 99999999999999976443
No 173
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=9.1e-13 Score=121.14 Aligned_cols=239 Identities=17% Similarity=0.263 Sum_probs=148.5
Q ss_pred cccCCCCCCCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECC--CCCEEEEEeCCCcEEEEecCCceeee-
Q 012367 182 SEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSP--DGRYLASGGEDGVVRIWHVTSVAASC- 258 (465)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~LaSgs~Dg~V~iWd~~~~~~~~- 258 (465)
+...+..++-...++++++...+..- ...+....++|.+.|+.|.|.+ -|+.+|+++.|+++.||.=......+
T Consensus 22 D~~GRRmAtCSsDq~vkI~d~~~~s~---~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~ 98 (361)
T KOG2445|consen 22 DFYGRRMATCSSDQTVKIWDSTSDSG---TWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAH 98 (361)
T ss_pred cccCceeeeccCCCcEEEEeccCCCC---ceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccc
Confidence 44445555666778888887433322 2334456679999999999966 58999999999999999753211100
Q ss_pred -eee-cCCCCcccccCCCeEEeccCCC----------CceeEecCCceeeec-CCcceeee-------ccccceEEEEec
Q 012367 259 -KSF-TDDGGFGSNAKEGKIKFGKKKS----------SHVPVVIPDEVFQIE-ESPLQELH-------GHKGDVLDLAWS 318 (465)
Q Consensus 259 -~~~-~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~-~~~~~~~~-------gh~~~V~~l~~s 318 (465)
... .-............+.++...- ++..+.......++. -...++++ .+.....|+.|+
T Consensus 99 ~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn 178 (361)
T KOG2445|consen 99 GRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWN 178 (361)
T ss_pred cceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeec
Confidence 000 0000000111111122222211 111111111111111 11122222 466778899999
Q ss_pred CCC----EEEEEeCC-----CeEEEEeCCCCe--Ee--EEe-cCCCceEEEEEccCCCC---EEEEEeCCCcEEEEeCCC
Q 012367 319 NSN----YLLSCSMD-----KTVRMWQVGCNQ--CL--NVF-DHHNYVTCVQFNPIDDN---YFISGSIDGKVRIWGVCE 381 (465)
Q Consensus 319 ~~~----~l~s~s~D-----gtV~lWD~~~~~--~l--~~~-~h~~~V~~i~fsp~~~~---~l~sgs~Dg~I~iwd~~~ 381 (465)
|.. +|+.|+.+ +.++||....+. .. ..+ +|.++|+.|+|.|.-|+ .||+++.|| |+||.+..
T Consensus 179 ~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 179 PSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred cccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEee
Confidence 853 66666665 478999775442 22 223 59999999999995443 689999999 99999863
Q ss_pred Ce---------------------EEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCc
Q 012367 382 KR---------------------VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 424 (465)
Q Consensus 382 ~~---------------------~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~ 424 (465)
.+ +..+.+|+..|..++|+-.|..|++.+.||+||+|...-..
T Consensus 258 ~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n 321 (361)
T KOG2445|consen 258 ARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNN 321 (361)
T ss_pred ccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhh
Confidence 11 22367899999999999999999999999999999876443
No 174
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.51 E-value=1.3e-13 Score=134.77 Aligned_cols=188 Identities=25% Similarity=0.388 Sum_probs=125.8
Q ss_pred hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (465)
+.+.+|.+.|.|-.|+|+|.-|+|+|+||.|+||.-...-..... .....+ ............. ...+...
T Consensus 98 ~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~-Q~~~~v------~c~~W~p~S~~vl--~c~g~h~ 168 (737)
T KOG1524|consen 98 RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVV-QNEESI------RCARWAPNSNSIV--FCQGGHI 168 (737)
T ss_pred hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHh-hcCcee------EEEEECCCCCceE--EecCCeE
Confidence 456799999999999999999999999999999986542111000 000000 0011111111111 1111111
Q ss_pred ee----cCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeC
Q 012367 296 QI----EESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI 370 (465)
Q Consensus 296 ~~----~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~ 370 (465)
.+ ....+.....|.+-|.++.|++. +.+++|+.|-..++||.........-.|..+|++++|+| + ..++.+|.
T Consensus 169 ~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~np-d-~~~~v~S~ 246 (737)
T KOG1524|consen 169 SIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNP-E-KDYLLWSY 246 (737)
T ss_pred EEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeecc-c-cceeeeee
Confidence 11 11234457799999999999985 699999999999999987444444446889999999999 6 66666664
Q ss_pred CCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 371 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 371 Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
+++|+= ....+.|..++|+|||..+++|+..|.+.+=.+-...+
T Consensus 247 -nt~R~~----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l 290 (737)
T KOG1524|consen 247 -NTARFS----------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQL 290 (737)
T ss_pred -eeeeec----------CCCccceEEEEEcCCCceeeccccCceEEEeeeehhhh
Confidence 455522 23446789999999999999999999887655544443
No 175
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.50 E-value=9.9e-14 Score=137.80 Aligned_cols=165 Identities=21% Similarity=0.357 Sum_probs=132.0
Q ss_pred CCCcEEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367 221 HKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (465)
Q Consensus 221 H~~~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (465)
....|+.+.|.| |...||.|+.||.|++|.+..+.... ...
T Consensus 626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e--------------------------------------~~~ 667 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE--------------------------------------NEM 667 (1012)
T ss_pred cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc--------------------------------------ccC
Confidence 345699999999 66799999999999999997643211 123
Q ss_pred CcceeeeccccceEEEEecC--CCEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEE
Q 012367 300 SPLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRI 376 (465)
Q Consensus 300 ~~~~~~~gh~~~V~~l~~s~--~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~i 376 (465)
.|...+.+|...|+++.|+| .+.|++++.|-+|+|||+.++.....+ +|.+.|..++|+| +|+.+++.+.||+|++
T Consensus 668 tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rV 746 (1012)
T KOG1445|consen 668 TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRV 746 (1012)
T ss_pred CcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCceEEE
Confidence 56778889999999999998 468999999999999999998876666 7999999999999 9999999999999999
Q ss_pred EeCCCCeEEecc--c-CCCCeEEEEEeeCCCEEEEEEcC----CcEEEEEecCCc
Q 012367 377 WGVCEKRVVDWA--D-VRDVISAICYIPDGKGFIVGSIT----GTCHFYKASGND 424 (465)
Q Consensus 377 wd~~~~~~~~~~--~-~~~~V~sv~~spdg~~l~sgs~d----G~v~iwd~~~~~ 424 (465)
|.-+.+..-... + ....--.|.|.-||+++++.+.| ..|.+||..+-.
T Consensus 747 y~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 747 YEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLD 801 (1012)
T ss_pred eCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhcc
Confidence 999875432211 1 22334457788899998887764 568888876544
No 176
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=6.4e-14 Score=147.97 Aligned_cols=186 Identities=21% Similarity=0.301 Sum_probs=142.9
Q ss_pred CCcEEEEEECCCCCE----EEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeee
Q 012367 222 KGCIWTLKFSPDGRY----LASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 297 (465)
Q Consensus 222 ~~~I~~l~fspdg~~----LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (465)
....+.++|.+.|.. ||.|.+||.|.+||...... ..
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~---------------------------------------~~ 104 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA---------------------------------------NA 104 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhcc---------------------------------------Cc
Confidence 344678999988775 99999999999999875200 00
Q ss_pred cCCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEe---cCCCceEEEEEccCCCCEEEEEeCCC
Q 012367 298 EESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDG 372 (465)
Q Consensus 298 ~~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~---~h~~~V~~i~fsp~~~~~l~sgs~Dg 372 (465)
....+.+...|++.|..+.|++. ++|++|+.||.|.|||+..-+.-... ...+.|.|++|+......|++++.+|
T Consensus 105 ~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg 184 (1049)
T KOG0307|consen 105 SEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSG 184 (1049)
T ss_pred chHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCC
Confidence 12345667789999999999984 49999999999999999875544444 24568999999997888999999999
Q ss_pred cEEEEeCCCCeEE-ecccCC--CCeEEEEEeeCC-CEEEEEEcC---CcEEEEEecCCceeeeEeeecCcccccCCceee
Q 012367 373 KVRIWGVCEKRVV-DWADVR--DVISAICYIPDG-KGFIVGSIT---GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 445 (465)
Q Consensus 373 ~I~iwd~~~~~~~-~~~~~~--~~V~sv~~spdg-~~l~sgs~d---G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~ 445 (465)
++.|||++..+.+ .+..+. ..+..++|+|++ ..|++++.| -.|.+||++--.-+++.+..|. ..|.+
T Consensus 185 ~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~------~Gils 258 (1049)
T KOG0307|consen 185 RAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQ------RGILS 258 (1049)
T ss_pred CceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccc------cceee
Confidence 9999999876544 444443 357899999987 456666654 3689999997777766554444 67999
Q ss_pred EEEeecC
Q 012367 446 IQGRISK 452 (465)
Q Consensus 446 ~~f~p~g 452 (465)
+.+++.+
T Consensus 259 lsWc~~D 265 (1049)
T KOG0307|consen 259 LSWCPQD 265 (1049)
T ss_pred eccCCCC
Confidence 9999875
No 177
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.49 E-value=6.2e-12 Score=125.21 Aligned_cols=170 Identities=30% Similarity=0.573 Sum_probs=139.0
Q ss_pred ccchhhhccCCCcEEEEEECCCCCEEEEEeC-CCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec
Q 012367 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 290 (465)
Q Consensus 212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~-Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (465)
......+.+|...|.+++|+|++.++++++. |+.+++|++...
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------ 188 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG------------------------------------ 188 (466)
T ss_pred CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC------------------------------------
Confidence 3445667899999999999999999999986 999999998852
Q ss_pred CCceeeecCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeE-Ee-cCCCceEEEEEccCCCCEEE
Q 012367 291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLN-VF-DHHNYVTCVQFNPIDDNYFI 366 (465)
Q Consensus 291 ~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~-~~-~h~~~V~~i~fsp~~~~~l~ 366 (465)
..+..+.+|...|.+++|+|++ .+++++.|++|++||...+..+. .+ .|...+ ...|+| ++.+++
T Consensus 189 ---------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~ 257 (466)
T COG2319 189 ---------KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSP-DGSLLA 257 (466)
T ss_pred ---------ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECC-CCCEEE
Confidence 3455666799999999999876 45555999999999999888877 45 466665 448999 778999
Q ss_pred EEeCCCcEEEEeCCCCeE--EecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367 367 SGSIDGKVRIWGVCEKRV--VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 428 (465)
Q Consensus 367 sgs~Dg~I~iwd~~~~~~--~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~ 428 (465)
+++.|+.+++|++..... .....|...|.++.|.|++..+++++.|+.+.+|++........
T Consensus 258 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 321 (466)
T COG2319 258 SGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS 321 (466)
T ss_pred EecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEE
Confidence 999999999999986543 33457789999999999998998899999999998877665443
No 178
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.48 E-value=6.6e-13 Score=121.00 Aligned_cols=208 Identities=20% Similarity=0.324 Sum_probs=137.9
Q ss_pred chhhhccCCCcEEEEEECCCCC-EEEEEeCC-------CcEEEEecCCceeeeeeecCCC--Ccc--cccCCCeEEeccC
Q 012367 214 TSQEIQAHKGCIWTLKFSPDGR-YLASGGED-------GVVRIWHVTSVAASCKSFTDDG--GFG--SNAKEGKIKFGKK 281 (465)
Q Consensus 214 ~~~~l~~H~~~I~~l~fspdg~-~LaSgs~D-------g~V~iWd~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~ 281 (465)
+.+.|..|.|.||.++-+|-.+ .|+|+-.| ..+.||.+...........-.. ... .......+.+...
T Consensus 55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn 134 (370)
T KOG1007|consen 55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN 134 (370)
T ss_pred hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence 3466778999999999999554 77777543 2478999876433211111000 000 0011122222222
Q ss_pred CCCceeEecCC-ceeeecCCc--cee-----eeccccceEEEEecC--CCEEEEEeCCCeEEEEeCCCCeEeEEec--CC
Q 012367 282 KSSHVPVVIPD-EVFQIEESP--LQE-----LHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQCLNVFD--HH 349 (465)
Q Consensus 282 ~~~~~~~~~~~-~~~~~~~~~--~~~-----~~gh~~~V~~l~~s~--~~~l~s~s~DgtV~lWD~~~~~~l~~~~--h~ 349 (465)
....+.+..+. .+|.+...+ +.. -.+|....++-+|+| ++.-+....|+++..||+++..+...+. |.
T Consensus 135 s~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHg 214 (370)
T KOG1007|consen 135 SDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHG 214 (370)
T ss_pred CCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhc
Confidence 22222222111 112222111 111 224667788889998 4555556678999999999999888884 88
Q ss_pred CceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe--EEecccCCCCeEEEEEeeC-CCEEEEEEcCCcEEEEEec
Q 012367 350 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR--VVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKAS 421 (465)
Q Consensus 350 ~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~--~~~~~~~~~~V~sv~~spd-g~~l~sgs~dG~v~iwd~~ 421 (465)
..|..+.|+|....+|++|+.||.|||||.+..+ +..+.+|..+|.+|.|+|. .+.|++|+.|..|.+|...
T Consensus 215 q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 215 QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence 8999999999777889999999999999998643 4458899999999999994 4688999999999999765
No 179
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.48 E-value=5.8e-13 Score=130.27 Aligned_cols=220 Identities=13% Similarity=0.229 Sum_probs=144.6
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEec-cCCCCceeEecCCceeee-
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFG-KKKSSHVPVVIPDEVFQI- 297 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~- 297 (465)
-|...|-|+.|+.+...+.+++.+-.++-|++.+.... ....+...+............ ........+...++-|.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~-~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVE-VAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhh-hhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 36666779999887766666555555555555443221 111111111111111111111 122233333444444444
Q ss_pred --cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCc
Q 012367 298 --EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGK 373 (465)
Q Consensus 298 --~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~ 373 (465)
..+.......|.+.|.+-.|+|+| -|++++.||.|++|.-... ...++ +...+|.|++|.|...+.+.+.+ +.
T Consensus 91 ~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM-LRStl~Q~~~~v~c~~W~p~S~~vl~c~g--~h 167 (737)
T KOG1524|consen 91 NKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM-LRSTVVQNEESIRCARWAPNSNSIVFCQG--GH 167 (737)
T ss_pred cccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch-HHHHHhhcCceeEEEEECCCCCceEEecC--Ce
Confidence 234456678899999999999987 7999999999999986432 22222 56779999999995566666544 55
Q ss_pred EEEEeCC-CCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec
Q 012367 374 VRIWGVC-EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS 451 (465)
Q Consensus 374 I~iwd~~-~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~ 451 (465)
+.|=-+. +.+++.|..|.+.|.++.|+|..+.+++|+.|-..++||..+..+-. ...+..+||+++|.|+
T Consensus 168 ~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~--------S~~~ey~ITSva~npd 238 (737)
T KOG1524|consen 168 ISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFT--------SAAEEYAITSVAFNPE 238 (737)
T ss_pred EEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCccccc--------CChhccceeeeeeccc
Confidence 6666664 45678899999999999999999999999999999999988765421 1123467888888887
No 180
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.48 E-value=3.3e-11 Score=119.95 Aligned_cols=221 Identities=23% Similarity=0.424 Sum_probs=158.4
Q ss_pred hhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCce-eeeeeecCCCCcccccCCCeEEec-cCCCCceeE-ec---
Q 012367 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA-ASCKSFTDDGGFGSNAKEGKIKFG-KKKSSHVPV-VI--- 290 (465)
Q Consensus 217 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~--- 290 (465)
.+.+|...|.++.|.+.+..++.++.|+.+.+|+..... .......... ......... ......... ..
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~ 134 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-----SSVSKLALSSPDGNSILLASSSLDG 134 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-----CceeeEEEECCCcceEEeccCCCCc
Confidence 566899999999999999999999999999999998875 2222222111 011111110 000001111 01
Q ss_pred CCceeeec--CCcceeeeccccceEEEEecCCC-EEEEEeC-CCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCC-E
Q 012367 291 PDEVFQIE--ESPLQELHGHKGDVLDLAWSNSN-YLLSCSM-DKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDN-Y 364 (465)
Q Consensus 291 ~~~~~~~~--~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~-DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~-~ 364 (465)
...+|... ......+.+|...|..++|+|++ .+++++. |+.+++|++..+..+..+. |...|.+++|+| ++. +
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~ 213 (466)
T COG2319 135 TVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSP-DGGLL 213 (466)
T ss_pred cEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcC-CcceE
Confidence 11234444 25667788999999999999986 6777775 9999999999888887775 889999999998 777 5
Q ss_pred EEEEeCCCcEEEEeCCCCeEEe--cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCc
Q 012367 365 FISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (465)
Q Consensus 365 l~sgs~Dg~I~iwd~~~~~~~~--~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 442 (465)
+++++.|+.|++||...+.... +..|...+ ...|+|++..+++++.|+.+++|++............ +...
T Consensus 214 ~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~------~~~~ 286 (466)
T COG2319 214 IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG------HSSS 286 (466)
T ss_pred EEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEec------CCcc
Confidence 6666999999999998776665 66677765 4489999999999999999999999876652222211 2466
Q ss_pred eeeEEEee
Q 012367 443 ITGIQGRI 450 (465)
Q Consensus 443 It~~~f~p 450 (465)
+.++.|.|
T Consensus 287 v~~~~~~~ 294 (466)
T COG2319 287 VLSVAFSP 294 (466)
T ss_pred EEEEEECC
Confidence 77777777
No 181
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=8.5e-13 Score=117.65 Aligned_cols=202 Identities=13% Similarity=0.215 Sum_probs=142.3
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcc
Q 012367 223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 302 (465)
Q Consensus 223 ~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (465)
..|.+-+++|.+++|+.|..+|.|-+..+.+...... ......++
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa-----------------------------------~~~gk~~i 55 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA-----------------------------------EPPGKLKI 55 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc-----------------------------------CCCCCcce
Confidence 3466778999999999999999999999876321110 00012345
Q ss_pred eeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCe----EeEEe-----cCC-----CceEEEEEccCCCCEEEEE
Q 012367 303 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ----CLNVF-----DHH-----NYVTCVQFNPIDDNYFISG 368 (465)
Q Consensus 303 ~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~----~l~~~-----~h~-----~~V~~i~fsp~~~~~l~sg 368 (465)
..+++|.++|..++|+ +.+|++|+. |.|+-|..+... +.... .|. -.|+++-..| ..+-++.+
T Consensus 56 v~eqahdgpiy~~~f~-d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~A 132 (325)
T KOG0649|consen 56 VPEQAHDGPIYYLAFH-DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFA 132 (325)
T ss_pred eeccccCCCeeeeeee-hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEecc-CCCcEEEe
Confidence 5668999999999998 566777765 999999764321 11111 122 2578899999 55555555
Q ss_pred eCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCc---cccc-CCce
Q 012367 369 SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR---KKTS-GNKI 443 (465)
Q Consensus 369 s~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~---~~~~-~~~I 443 (465)
+.|+.++-||+.+|++.. +.+|++.|.++.-......+++|+.||++|+||+.+++-.. .+....+ .+.+ ++.|
T Consensus 133 gGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~-~ie~yk~~~~lRp~~g~wi 211 (325)
T KOG0649|consen 133 GGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVS-MIEPYKNPNLLRPDWGKWI 211 (325)
T ss_pred cCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeE-EeccccChhhcCcccCcee
Confidence 579999999999999876 89999999999986666689999999999999999876532 2222221 1222 3555
Q ss_pred eeEE----EeecCCccceeeeecC
Q 012367 444 TGIQ----GRISKNYDNFRRFQTP 463 (465)
Q Consensus 444 t~~~----f~p~gs~d~~~~~~~p 463 (465)
-.++ +...|.--+.-+|..|
T Consensus 212 gala~~edWlvCGgGp~lslwhLr 235 (325)
T KOG0649|consen 212 GALAVNEDWLVCGGGPKLSLWHLR 235 (325)
T ss_pred EEEeccCceEEecCCCceeEEecc
Confidence 5554 4445666677777765
No 182
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=8.2e-13 Score=123.02 Aligned_cols=143 Identities=20% Similarity=0.405 Sum_probs=116.3
Q ss_pred CEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEE
Q 012367 235 RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLD 314 (465)
Q Consensus 235 ~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~ 314 (465)
..+|++-..|.|++||..++ +.+..+.+|...+..
T Consensus 41 ~~vav~lSngsv~lyd~~tg---------------------------------------------~~l~~fk~~~~~~N~ 75 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG---------------------------------------------QLLEEFKGPPATTNG 75 (376)
T ss_pred eeEEEEecCCeEEEEeccch---------------------------------------------hhhheecCCCCcccc
Confidence 46888888999999999874 346778888888888
Q ss_pred EEecCC---CEEEEEeCCCeEEEEeCCCCeEeEEec---CC-CceEEEEEccCCCCEEEEEeC----CCcEEEEeCCCCe
Q 012367 315 LAWSNS---NYLLSCSMDKTVRMWQVGCNQCLNVFD---HH-NYVTCVQFNPIDDNYFISGSI----DGKVRIWGVCEKR 383 (465)
Q Consensus 315 l~~s~~---~~l~s~s~DgtV~lWD~~~~~~l~~~~---h~-~~V~~i~fsp~~~~~l~sgs~----Dg~I~iwd~~~~~ 383 (465)
+.|... ..+.+|+.||+|++||++.......+. ++ .+..|++.+- .++.+++|.. +..|.+||++..+
T Consensus 76 vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~q 154 (376)
T KOG1188|consen 76 VRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQ 154 (376)
T ss_pred eEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccC-cCCeEEeccccccCceEEEEEEecccc
Confidence 998752 379999999999999999877666553 43 4778888876 7788888853 6789999998765
Q ss_pred E-Ee--cccCCCCeEEEEEee-CCCEEEEEEcCCcEEEEEecCC
Q 012367 384 V-VD--WADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGN 423 (465)
Q Consensus 384 ~-~~--~~~~~~~V~sv~~sp-dg~~l~sgs~dG~v~iwd~~~~ 423 (465)
. +. ...|.+.|++++|+| +.+.|++|+.||-|.+||+...
T Consensus 155 q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 155 QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred chhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 4 43 456999999999999 5579999999999999999754
No 183
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.46 E-value=1e-12 Score=121.44 Aligned_cols=159 Identities=23% Similarity=0.362 Sum_probs=120.5
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCccee
Q 012367 225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 304 (465)
Q Consensus 225 I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (465)
-.+++|+|||.+|+.|- ...|+|+|+......+.... ...+.
T Consensus 161 AhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~-------------------------------------t~~~~ 202 (406)
T KOG2919|consen 161 AHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYT-------------------------------------TVTKG 202 (406)
T ss_pred heeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchh-------------------------------------hhhcc
Confidence 35899999999998765 47799999854322111110 11111
Q ss_pred eeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeC-CCcEEEEeCC
Q 012367 305 LHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSI-DGKVRIWGVC 380 (465)
Q Consensus 305 ~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~-Dg~I~iwd~~ 380 (465)
-.+..+-|.+++++|- +.++.++...++-|+.-..+.++..+ +|.+.|+.++|.+ +|+.|.+|+. |.+|-.||++
T Consensus 203 k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e-dGn~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 203 KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE-DGNKLFSGARKDDKILCWDIR 281 (406)
T ss_pred cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc-CcCeecccccCCCeEEEEeeh
Confidence 3356788899999984 48999999999999988888888877 6999999999999 9999999986 7789999998
Q ss_pred CCe--EEecccCCC-CeEE--EEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367 381 EKR--VVDWADVRD-VISA--ICYIPDGKGFIVGSITGTCHFYKASG 422 (465)
Q Consensus 381 ~~~--~~~~~~~~~-~V~s--v~~spdg~~l~sgs~dG~v~iwd~~~ 422 (465)
.-. +..+..|.+ .-.. +...|+|++|++|+.||.|++||+.+
T Consensus 282 ~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 282 YSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred hccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 643 223444443 2233 45568999999999999999999987
No 184
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.44 E-value=1.2e-12 Score=130.80 Aligned_cols=175 Identities=25% Similarity=0.406 Sum_probs=137.2
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcce
Q 012367 224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 303 (465)
Q Consensus 224 ~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (465)
.|..++|-|||..|+.+..| .+.|||+..+ ..+.
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG---------------------------------------------~llq 47 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDG---------------------------------------------TLLQ 47 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCc---------------------------------------------cccc
Confidence 79999999999987777654 5899998864 4578
Q ss_pred eeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCC
Q 012367 304 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 382 (465)
Q Consensus 304 ~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~ 382 (465)
++.||.+.|.+++|+.+| .++||+.|+.|.+|...- +-+-.+.|.+.|.|+.|+| -...+++++.. ..-+|.....
T Consensus 48 tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~LkYSH~D~IQCMsFNP-~~h~LasCsLs-dFglWS~~qK 124 (1081)
T KOG1538|consen 48 PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILKYSHNDAIQCMSFNP-ITHQLASCSLS-DFGLWSPEQK 124 (1081)
T ss_pred ccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceeeeccCCeeeEeecCc-hHHHhhhcchh-hccccChhhh
Confidence 889999999999999876 899999999999998653 3345568999999999999 78888988864 4678887655
Q ss_pred eEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCC
Q 012367 383 RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKN 453 (465)
Q Consensus 383 ~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs 453 (465)
.+.. ......+.+.+|..||++++.|-.+|+|.+-+-.+.... .+.- ...+..+|-+++|+|+.+
T Consensus 125 ~V~K-~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~--~I~R---pgg~Nspiwsi~~~p~sg 189 (1081)
T KOG1538|consen 125 SVSK-HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV--KIER---PGGSNSPIWSICWNPSSG 189 (1081)
T ss_pred hHHh-hhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce--EEeC---CCCCCCCceEEEecCCCC
Confidence 4433 334567889999999999999999999998865433221 2222 223567899999999843
No 185
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.44 E-value=2.4e-12 Score=126.15 Aligned_cols=188 Identities=19% Similarity=0.331 Sum_probs=134.4
Q ss_pred CCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367 222 KGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (465)
Q Consensus 222 ~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (465)
+..|+|++|-|.+. .++.+-.+|.+.++|....... ..+ ............+. .. .......
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~---t~p--~~~~~k~~~~f~i~---------t~---ksk~~rN 281 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGA---TAP--SYQALKDGDQFAIL---------TS---KSKKTRN 281 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccC---CCC--cccccCCCCeeEEe---------ee---eccccCC
Confidence 47899999999655 6666678999999987321100 000 00000000000000 00 0001124
Q ss_pred cceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCCCcEEEEe
Q 012367 301 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 378 (465)
Q Consensus 301 ~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd 378 (465)
|+..+.--.+.|...+|+|++ +|++.|.||.+||+|..+...+..++ --+...|++|+| |++||++|+.|..|.||.
T Consensus 282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwS 360 (636)
T KOG2394|consen 282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWS 360 (636)
T ss_pred ccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEE
Confidence 555555556689999999986 99999999999999999888777764 456789999999 999999999999999999
Q ss_pred CCCCeEEe-cccCCCCeEEEEEeeC-----------------------------------C-------------CEEEEE
Q 012367 379 VCEKRVVD-WADVRDVISAICYIPD-----------------------------------G-------------KGFIVG 409 (465)
Q Consensus 379 ~~~~~~~~-~~~~~~~V~sv~~spd-----------------------------------g-------------~~l~sg 409 (465)
+..++++. -.+|+.+|+.|+|.|- + -.|.+.
T Consensus 361 f~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSV 440 (636)
T KOG2394|consen 361 FEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSV 440 (636)
T ss_pred eccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecc
Confidence 99999887 5789999999999830 1 146677
Q ss_pred EcCCcEEEEEecCCceee
Q 012367 410 SITGTCHFYKASGNDLKL 427 (465)
Q Consensus 410 s~dG~v~iwd~~~~~~~~ 427 (465)
+.|-.+.+||+....+..
T Consensus 441 GqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 441 GQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred cccceEEEEecchhhccc
Confidence 789999999998776644
No 186
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.43 E-value=4e-12 Score=130.70 Aligned_cols=229 Identities=19% Similarity=0.267 Sum_probs=145.9
Q ss_pred cchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCC--EEEEEeCCCcEEEEecCCceeeeeeecCCCCc---
Q 012367 193 KANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTDDGGF--- 267 (465)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~--~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~--- 267 (465)
..+.+-+|...+..... +.........|..+|+.+.|-.+-. -++++|.||.|..|++................
T Consensus 263 y~GqV~lWD~~~~~~~~-~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~ 341 (555)
T KOG1587|consen 263 YNGQVVLWDLRKGSDTP-PSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKG 341 (555)
T ss_pred cCceEEEEEccCCCCCC-CcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccc
Confidence 34445555444433321 1222334457999999999977544 49999999999999876533211111100000
Q ss_pred ---ccccCCCeEEeccCCCCceeE-ecCCceee-----------ecCCcceeeeccccceEEEEecCC--CEEEEEeCCC
Q 012367 268 ---GSNAKEGKIKFGKKKSSHVPV-VIPDEVFQ-----------IEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDK 330 (465)
Q Consensus 268 ---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------~~~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~Dg 330 (465)
........+.+.........+ ...+.++. ...++...+..|.+.|..+.++|= ..+++++ |.
T Consensus 342 ~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW 420 (555)
T KOG1587|consen 342 QQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DW 420 (555)
T ss_pred cccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cc
Confidence 000001111111111111111 11111111 112335566778999999999983 3555555 99
Q ss_pred eEEEEeCC-CCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCC---eEEecccCCCCeEEEEEeeCCCE
Q 012367 331 TVRMWQVG-CNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK---RVVDWADVRDVISAICYIPDGKG 405 (465)
Q Consensus 331 tV~lWD~~-~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~---~~~~~~~~~~~V~sv~~spdg~~ 405 (465)
+|+||... ...++..+ .+..+|++++|+|+....|+++..||.|.|||+... .+....-+....+.+.|+++|+.
T Consensus 421 ~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~ 500 (555)
T KOG1587|consen 421 TVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKL 500 (555)
T ss_pred eeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcE
Confidence 99999987 55666666 477789999999999999999999999999999643 23333334667788899999999
Q ss_pred EEEEEcCCcEEEEEecCC
Q 012367 406 FIVGSITGTCHFYKASGN 423 (465)
Q Consensus 406 l~sgs~dG~v~iwd~~~~ 423 (465)
|++|...|++++|++...
T Consensus 501 lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 501 LAVGDANGTTHILKLSES 518 (555)
T ss_pred EEEecCCCcEEEEEcCch
Confidence 999999999999999754
No 187
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.39 E-value=2.9e-12 Score=115.56 Aligned_cols=165 Identities=18% Similarity=0.251 Sum_probs=125.3
Q ss_pred cCCCcEEEEEECC-CCC--EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367 220 AHKGCIWTLKFSP-DGR--YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (465)
Q Consensus 220 ~H~~~I~~l~fsp-dg~--~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (465)
+..+.+.|..+.- ++. +|+.|-++|.|.+||+.++........
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~---------------------------------- 193 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQ---------------------------------- 193 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccc----------------------------------
Confidence 4567788887543 343 677888999999999988633222111
Q ss_pred ecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCC--eE-eE-Eec-CCCceEEEEEccCCCCEEEEEeC
Q 012367 297 IEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCN--QC-LN-VFD-HHNYVTCVQFNPIDDNYFISGSI 370 (465)
Q Consensus 297 ~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~--~~-l~-~~~-h~~~V~~i~fsp~~~~~l~sgs~ 370 (465)
..+.......|..+|.++.+.+. +.=++|+.+..+..|.+... .+ ++ ... .+-.|..+..-| |++.+||++.
T Consensus 194 -~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGW 271 (323)
T KOG0322|consen 194 -SSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGW 271 (323)
T ss_pred -ccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeeccc
Confidence 01223344579999999999863 34578888888999988533 22 11 112 334578889999 9999999999
Q ss_pred CCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEe
Q 012367 371 DGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKA 420 (465)
Q Consensus 371 Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~ 420 (465)
|+.||||..++.+.+. +..|...|++++|+|+...+++++.|++|.+|++
T Consensus 272 D~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 272 DHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999988776 7779999999999999999999999999999986
No 188
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.39 E-value=2.7e-11 Score=114.10 Aligned_cols=157 Identities=18% Similarity=0.283 Sum_probs=121.1
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCc
Q 012367 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 301 (465)
Q Consensus 222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (465)
..+|.+|.++.+ .|+.+=++. |.|||+.+.+....
T Consensus 87 pt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhT------------------------------------------ 121 (391)
T KOG2110|consen 87 PTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHT------------------------------------------ 121 (391)
T ss_pred CCceEEEEEccc--eEEEEEccc-EEEEecccceeehh------------------------------------------
Confidence 567999999754 566666654 99999998644322
Q ss_pred ceeeeccccceEEEEecCCC-EEEE--EeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCc-EEE
Q 012367 302 LQELHGHKGDVLDLAWSNSN-YLLS--CSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGK-VRI 376 (465)
Q Consensus 302 ~~~~~gh~~~V~~l~~s~~~-~l~s--~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~-I~i 376 (465)
+.....|...+.++.+++.+ +|+- ....|.|.|||+.+-+.+..+ .|.+.+-|++|+| +|.++||+|..|+ |||
T Consensus 122 I~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRV 200 (391)
T KOG2110|consen 122 IETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRV 200 (391)
T ss_pred hhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEE
Confidence 11222355566677776654 5552 334589999999999998888 4999999999999 9999999999887 789
Q ss_pred EeCCCCeEEe-ccc--CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCc
Q 012367 377 WGVCEKRVVD-WAD--VRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 424 (465)
Q Consensus 377 wd~~~~~~~~-~~~--~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~ 424 (465)
|.+.+|+.+. +.. ....|.+++|+|++++|++.+..++|++|.+....
T Consensus 201 f~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 201 FSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 9999987765 322 24568999999999999999999999999987544
No 189
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.38 E-value=7.9e-11 Score=111.01 Aligned_cols=217 Identities=16% Similarity=0.251 Sum_probs=137.4
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC----ceee
Q 012367 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD----EVFQ 296 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 296 (465)
....|..+.|+.+...|..|+.|| -+++.......... ....+.. .+...-.....+.+.... ++..
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~-~~~~~~~-------IvEmLFSSSLvaiV~~~qpr~Lkv~~ 74 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFS-KDTEGVS-------IVEMLFSSSLVAIVSIKQPRKLKVVH 74 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhc-ccCCCeE-------EEEeecccceeEEEecCCCceEEEEE
Confidence 345678888999999999999999 57887765322000 0000000 000000000001111100 0111
Q ss_pred ecC-CcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec----CCCceEEEEEccCCCCEEEEEe--
Q 012367 297 IEE-SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFISGS-- 369 (465)
Q Consensus 297 ~~~-~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~----h~~~V~~i~fsp~~~~~l~sgs-- 369 (465)
... ..++.+ -....|.++.++.+. |+.+-.+. |.|||+++.+.++++. +...+.++.+++ .+.|++--+
T Consensus 75 ~Kk~~~ICe~-~fpt~IL~VrmNr~R-LvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~ 150 (391)
T KOG2110|consen 75 FKKKTTICEI-FFPTSILAVRMNRKR-LVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCYLAYPGST 150 (391)
T ss_pred cccCceEEEE-ecCCceEEEEEccce-EEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCC-CCceEEecCCC
Confidence 111 111111 134678888877655 44444444 9999999999999985 334566666666 555776532
Q ss_pred CCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCc-EEEEEecCCceeeeEeeecCcccccCCceeeEE
Q 012367 370 IDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGT-CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 447 (465)
Q Consensus 370 ~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~ 447 (465)
..|.|.|||+.+-+.+. +..|.+.+-+++|+|+|.+||+++..|+ ||+|.+.++++.++ + ++......|.++.
T Consensus 151 t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~e-F----RRG~~~~~IySL~ 225 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYE-F----RRGTYPVSIYSLS 225 (391)
T ss_pred CCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeee-e----eCCceeeEEEEEE
Confidence 25889999999877665 7789999999999999999999999998 58999998876443 2 2222357899999
Q ss_pred EeecCCcc
Q 012367 448 GRISKNYD 455 (465)
Q Consensus 448 f~p~gs~d 455 (465)
|+|+++|.
T Consensus 226 Fs~ds~~L 233 (391)
T KOG2110|consen 226 FSPDSQFL 233 (391)
T ss_pred ECCCCCeE
Confidence 99998773
No 190
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.36 E-value=4.8e-11 Score=110.60 Aligned_cols=199 Identities=17% Similarity=0.300 Sum_probs=129.1
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec-------CC-ceee
Q 012367 225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI-------PD-EVFQ 296 (465)
Q Consensus 225 I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~ 296 (465)
...+.|||||..|++-++|..+++|++......... ...........+.+......+..++. |. ..|.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~----~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a 127 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA----DGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFA 127 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCC----CCccccccceeEEeccCCEEEEEEeeeccccCCCccceee
Confidence 457899999999999999999999998642221110 00000000001111111111111111 00 0010
Q ss_pred e--cCCcceee-----------e--ccccce---EEEEecCCCEEEEEeCCCeEEEEeC-CCCeEe---EE-----ecCC
Q 012367 297 I--EESPLQEL-----------H--GHKGDV---LDLAWSNSNYLLSCSMDKTVRMWQV-GCNQCL---NV-----FDHH 349 (465)
Q Consensus 297 ~--~~~~~~~~-----------~--gh~~~V---~~l~~s~~~~l~s~s~DgtV~lWD~-~~~~~l---~~-----~~h~ 349 (465)
. ...|++.+ . .|...+ .+++|+|+|--+.++....|+++|+ +.|.-- .+ ++..
T Consensus 128 ~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 128 VSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred eccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhccccccc
Confidence 0 12233222 1 243333 5899999986666777899999999 555321 22 2346
Q ss_pred CceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCceee
Q 012367 350 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKL 427 (465)
Q Consensus 350 ~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~~~ 427 (465)
+-+.|++|+|.+...++.|+....+-|+.-..+.+.. +.+|.+.|+.++|.++|+.|.+|.. +-.|-.||++....++
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv 287 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV 287 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh
Confidence 7899999999888899999999999999877766554 6789999999999999999999987 6789999999765544
No 191
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=3.2e-11 Score=123.45 Aligned_cols=196 Identities=13% Similarity=0.171 Sum_probs=124.6
Q ss_pred hhhhccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEecCCceeeeeeecCCC-CcccccCCC-eEEeccCCCCceeEe
Q 012367 215 SQEIQAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDG-GFGSNAKEG-KIKFGKKKSSHVPVV 289 (465)
Q Consensus 215 ~~~l~~H~~~I~~l~fspdg~~LaSgs~D---g~V~iWd~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~ 289 (465)
.+.+..|...|...+|||||++||.++.+ ..|.+||+.++........... .......++ .+.+........
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~--- 272 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVL--- 272 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcE---
Confidence 35567889999999999999999988754 3699999987654322111110 000111111 122111111100
Q ss_pred cCCcee--eecCCcceeeeccccceEEEEecCCC-EEE-EEeCCCeEEEEeCCCC-eEeEEecCCCceEEEEEccCCCCE
Q 012367 290 IPDEVF--QIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDKTVRMWQVGCN-QCLNVFDHHNYVTCVQFNPIDDNY 364 (465)
Q Consensus 290 ~~~~~~--~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~-s~s~DgtV~lWD~~~~-~~l~~~~h~~~V~~i~fsp~~~~~ 364 (465)
.+| +........+..|...+....|+|++ .|+ ++..++...||++... .....+.+.. .++.|+| ++++
T Consensus 273 ---~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~Sp-DG~~ 346 (429)
T PRK01742 273 ---NIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISA-DGKT 346 (429)
T ss_pred ---EEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCC-CCCE
Confidence 122 22334455666777788899999986 455 4446788888876432 2223334443 4678999 9999
Q ss_pred EEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367 365 FISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS 421 (465)
Q Consensus 365 l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~ 421 (465)
|+.++.++ +.+||+.++....+... ....++.|+|||++|+.++.+|.+.+|.+.
T Consensus 347 ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 347 LVMINGDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred EEEEcCCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 98887765 56699988876544332 234678899999999999999998888764
No 192
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=6.7e-11 Score=121.38 Aligned_cols=183 Identities=13% Similarity=0.105 Sum_probs=128.2
Q ss_pred hhhccCCCcEEEEEECCCCCEEEEEeC---CCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYLASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~LaSgs~---Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (465)
+.+..|.+.|.+.+|+|||+.||..+. +..|.+||+.++..
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~------------------------------------ 238 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR------------------------------------ 238 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE------------------------------------
Confidence 456688899999999999999888764 46899999876422
Q ss_pred ceeeecCCcceeeeccccceEEEEecCCC-EE-EEEeCCCe--EEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEE
Q 012367 293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKT--VRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG 368 (465)
Q Consensus 293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l-~s~s~Dgt--V~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sg 368 (465)
..+..+.+.+...+|+|++ .| ++.+.++. |.+||+.++.......+.......+|+| +++.++..
T Consensus 239 ----------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp-DG~~i~f~ 307 (435)
T PRK05137 239 ----------ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSP-DGSQIVFE 307 (435)
T ss_pred ----------EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcC-CCCEEEEE
Confidence 1122344566778999987 44 46666655 7778998887655545666677899999 99988877
Q ss_pred eC-CC--cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcC---CcEEEEEecCCceeeeEeeecCcccccCCc
Q 012367 369 SI-DG--KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT---GTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (465)
Q Consensus 369 s~-Dg--~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~d---G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 442 (465)
+. ++ .|.+||+.++....+......+....|+|||+.|+..+.+ ..|.+||+.++.... +. ....
T Consensus 308 s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~--lt-------~~~~ 378 (435)
T PRK05137 308 SDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERI--LT-------SGFL 378 (435)
T ss_pred ECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEe--cc-------CCCC
Confidence 64 33 6888898887766655555567778999999999887654 357778876554322 11 1123
Q ss_pred eeeEEEeecCCc
Q 012367 443 ITGIQGRISKNY 454 (465)
Q Consensus 443 It~~~f~p~gs~ 454 (465)
+.+..|+|+|..
T Consensus 379 ~~~p~~spDG~~ 390 (435)
T PRK05137 379 VEGPTWAPNGRV 390 (435)
T ss_pred CCCCeECCCCCE
Confidence 556677777653
No 193
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=5.6e-11 Score=117.56 Aligned_cols=234 Identities=20% Similarity=0.238 Sum_probs=147.6
Q ss_pred hccccccccccccchhhhccCCCcEEEEEECCCCCE-EEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEec
Q 012367 201 QNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRY-LASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFG 279 (465)
Q Consensus 201 ~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~-LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (465)
+.++....+..+.+.|.| +|...-+.|..+|||+| +|||..--.|++||+.+......-......+ ....+.
T Consensus 31 ~lkkd~~~~~rieLiQdf-e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V------~feiLs 103 (703)
T KOG2321|consen 31 QLKKDVDYRQRIELIQDF-EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVV------DFEILS 103 (703)
T ss_pred HHhhchHHHHHHHHHHhc-CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccce------eEEEec
Confidence 344444445556666777 68888999999999996 5677788899999998754332211111110 001111
Q ss_pred cCCCCceeEecCCceeeecCCcceeeec-c-----ccceEEEEec-CCCEEEEEeCCCeEEEEeCCCCeEeEEec-CCCc
Q 012367 280 KKKSSHVPVVIPDEVFQIEESPLQELHG-H-----KGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNY 351 (465)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g-h-----~~~V~~l~~s-~~~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~ 351 (465)
...+.. +....+.... ++...| | ...-.+|+++ |..-|+.++....|+-+++..|+.+..|. ....
T Consensus 104 DD~SK~-v~L~~DR~Ie-----fHak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~ 177 (703)
T KOG2321|consen 104 DDYSKS-VFLQNDRTIE-----FHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGE 177 (703)
T ss_pred cchhhh-eEeecCceee-----ehhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccccccccccccc
Confidence 110000 0000000000 000001 1 1122456665 34345555555678888999999999996 4479
Q ss_pred eEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEec-------ccCCC-----CeEEEEEeeCCCEEEEEEcCCcEEEEE
Q 012367 352 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW-------ADVRD-----VISAICYIPDGKGFIVGSITGTCHFYK 419 (465)
Q Consensus 352 V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~-------~~~~~-----~V~sv~~spdg~~l~sgs~dG~v~iwd 419 (465)
+++|..++ ...+|++|+.+|.|-.||.++...+.. ..|.. .|+++.|+.+|-.+++|+.+|.+.|||
T Consensus 178 lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyD 256 (703)
T KOG2321|consen 178 LNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYD 256 (703)
T ss_pred ceeeeecC-ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEE
Confidence 99999999 778999999999999999988654432 12222 399999999999999999999999999
Q ss_pred ecCCceeeeEeeecCcccccCCceeeEEEeecCCc
Q 012367 420 ASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY 454 (465)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~ 454 (465)
+++.+..+..- |+ -.-+|..+.|.+.+..
T Consensus 257 LRa~~pl~~kd--h~----~e~pi~~l~~~~~~~q 285 (703)
T KOG2321|consen 257 LRASKPLLVKD--HG----YELPIKKLDWQDTDQQ 285 (703)
T ss_pred cccCCceeecc--cC----CccceeeecccccCCC
Confidence 99876544321 11 2256777777666433
No 194
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.35 E-value=2.2e-11 Score=111.32 Aligned_cols=198 Identities=15% Similarity=0.226 Sum_probs=142.6
Q ss_pred cCCCcEEEEEECCCCC-----EEEEEeCCCcEEEEecCCce--eeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367 220 AHKGCIWTLKFSPDGR-----YLASGGEDGVVRIWHVTSVA--ASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~-----~LaSgs~Dg~V~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (465)
.|.-+++.+-|.|+.. +|||.|. .+|+|.+.... ........
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~----------------------------- 142 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLN----------------------------- 142 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhc-----------------------------
Confidence 6899999999999763 6777654 69999987421 11100000
Q ss_pred ceeeecCCcceeeeccccceEEEEecC--CCEEEEEeCCCeEEEEeCCCCeE----eEEecCCCceEEEEEccCCCCEEE
Q 012367 293 EVFQIEESPLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQC----LNVFDHHNYVTCVQFNPIDDNYFI 366 (465)
Q Consensus 293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~--~~~l~s~s~DgtV~lWD~~~~~~----l~~~~h~~~V~~i~fsp~~~~~l~ 366 (465)
...-..+.+++++..|+. -+++.++|-|.|..|||+.++.. ...+.|...|..|+|.....+.|+
T Consensus 143 ---------~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FA 213 (364)
T KOG0290|consen 143 ---------NNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFA 213 (364)
T ss_pred ---------cCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEE
Confidence 000123667999999985 36899999999999999998733 233479999999999986678999
Q ss_pred EEeCCCcEEEEeCCCCeEEe---cccC-CCCeEEEEEee-CCCEEEEEEcC-CcEEEEEecCCceeeeEeeecCcccccC
Q 012367 367 SGSIDGKVRIWGVCEKRVVD---WADV-RDVISAICYIP-DGKGFIVGSIT-GTCHFYKASGNDLKLEKVDFHDRKKTSG 440 (465)
Q Consensus 367 sgs~Dg~I~iwd~~~~~~~~---~~~~-~~~V~sv~~sp-dg~~l~sgs~d-G~v~iwd~~~~~~~~~~~~~~~~~~~~~ 440 (465)
+.|.||.||+||++...--+ -... ..+...++|++ |-+++++-..| ..|.|.|++....++..+..| .
T Consensus 214 SvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H------~ 287 (364)
T KOG0290|consen 214 SVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNH------Q 287 (364)
T ss_pred EecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcC------c
Confidence 99999999999998754332 2222 56788899998 45677776665 568999999877766544433 4
Q ss_pred CceeeEEEeecC-------Ccc-ceeeeecC
Q 012367 441 NKITGIQGRISK-------NYD-NFRRFQTP 463 (465)
Q Consensus 441 ~~It~~~f~p~g-------s~d-~~~~~~~p 463 (465)
..|.++++.|.. ..| ...+|+.+
T Consensus 288 a~VNgIaWaPhS~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 288 ASVNGIAWAPHSSSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred ccccceEecCCCCceeeecCCcceEEEEecc
Confidence 789999998862 334 36777654
No 195
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.34 E-value=6.2e-12 Score=125.24 Aligned_cols=133 Identities=21% Similarity=0.388 Sum_probs=109.8
Q ss_pred cceeeeccccceEEEEecC--CCEEEEEeCCCeEEEEeCCCCeEe------EEecCCC-ceEEEEEccCCCCEEEEEeCC
Q 012367 301 PLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQCL------NVFDHHN-YVTCVQFNPIDDNYFISGSID 371 (465)
Q Consensus 301 ~~~~~~gh~~~V~~l~~s~--~~~l~s~s~DgtV~lWD~~~~~~l------~~~~h~~-~V~~i~fsp~~~~~l~sgs~D 371 (465)
.+..+.+|...|+++.|+| +.+|++||.|..|+||.+..+... ..++|.+ .|.|+.|+|+.+.++++++ .
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a-~ 149 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGA-H 149 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEecc-C
Confidence 4566789999999999998 679999999999999999755322 2244554 7899999997677777665 7
Q ss_pred CcEEEEeCCCCeEE-ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecC
Q 012367 372 GKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD 434 (465)
Q Consensus 372 g~I~iwd~~~~~~~-~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~ 434 (465)
|+++|||+.+++.+ ...+|.+.|.+..|+.||+.|++++.|..|+|||.+....+......|+
T Consensus 150 g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~ 213 (1012)
T KOG1445|consen 150 GSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHG 213 (1012)
T ss_pred ceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccc
Confidence 99999999987755 4889999999999999999999999999999999987766555444454
No 196
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=1.1e-10 Score=122.45 Aligned_cols=238 Identities=15% Similarity=0.185 Sum_probs=150.1
Q ss_pred CCcEEEEEECC--CCCEEEEEeCCCcEEEEecCC-----ceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc-
Q 012367 222 KGCIWTLKFSP--DGRYLASGGEDGVVRIWHVTS-----VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE- 293 (465)
Q Consensus 222 ~~~I~~l~fsp--dg~~LaSgs~Dg~V~iWd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 293 (465)
...|+.|.+-. |..+|++|+.||.||||+--. .+.+.......+........+.+..|....+...+.....
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeE
Confidence 44588888854 445999999999999997422 1222222222222222222333334444444443333222
Q ss_pred --eeeecCC-cceee-eccccceEEEEecC--CCEEEEEeCCCeEEEEeCCCCe---EeEEe-cCCCc--eEEEEEccCC
Q 012367 294 --VFQIEES-PLQEL-HGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQ---CLNVF-DHHNY--VTCVQFNPID 361 (465)
Q Consensus 294 --~~~~~~~-~~~~~-~gh~~~V~~l~~s~--~~~l~s~s~DgtV~lWD~~~~~---~l~~~-~h~~~--V~~i~fsp~~ 361 (465)
+|+.... .++.+ .+-..-|+++.-+- ++.+++|-.||.|++||.+... .+... .|+.. |..+.+.+..
T Consensus 1189 IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred EEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCC
Confidence 2333211 11211 23344566665442 4699999999999999997653 23444 47776 9999999833
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEe---cccC---CCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCc
Q 012367 362 DNYFISGSIDGKVRIWGVCEKRVVD---WADV---RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR 435 (465)
Q Consensus 362 ~~~l~sgs~Dg~I~iwd~~~~~~~~---~~~~---~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~ 435 (465)
-..+++|+.+|.|++||++...... ...| .+.++++..|++...+++|+. +.|.||++.+.++.... .+..
T Consensus 1269 ~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k--~n~~ 1345 (1387)
T KOG1517|consen 1269 LGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIK--YNPG 1345 (1387)
T ss_pred CcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccc--cCcc
Confidence 3459999999999999999843222 2222 235999999999999999999 99999999988765432 2222
Q ss_pred ccc-cCCceeeEEEeec------CCccceeeeec
Q 012367 436 KKT-SGNKITGIQGRIS------KNYDNFRRFQT 462 (465)
Q Consensus 436 ~~~-~~~~It~~~f~p~------gs~d~~~~~~~ 462 (465)
... ....++++.|+|- |..|++.-+..
T Consensus 1346 F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1346 FMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred cccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 222 2356789999986 77777665553
No 197
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.32 E-value=5e-11 Score=107.65 Aligned_cols=239 Identities=14% Similarity=0.188 Sum_probs=152.0
Q ss_pred chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec------------CCCCcccccCCCeEEeccC
Q 012367 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFT------------DDGGFGSNAKEGKIKFGKK 281 (465)
Q Consensus 214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 281 (465)
+...|++|.+.|+++.|-.+++ |.+|..-|.|++|++.+....+.... +.........+..+..+..
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~i 84 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTI 84 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEc
Confidence 4456779999999999988875 99999999999999987544332221 1111111222222222221
Q ss_pred CCC-ce--------------------------eEecCCce-ee---ec-CCccee------eeccccceEEEEecC-CC-
Q 012367 282 KSS-HV--------------------------PVVIPDEV-FQ---IE-ESPLQE------LHGHKGDVLDLAWSN-SN- 321 (465)
Q Consensus 282 ~~~-~~--------------------------~~~~~~~~-~~---~~-~~~~~~------~~gh~~~V~~l~~s~-~~- 321 (465)
..+ .+ ....+... .. .+ ..+... -.+..+.|.+..|.- .+
T Consensus 85 a~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s 164 (323)
T KOG0322|consen 85 AYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGS 164 (323)
T ss_pred cCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccc
Confidence 110 00 00000000 00 00 000000 113446677777642 22
Q ss_pred --EEEEEeCCCeEEEEeCCCCeEeEEe-----------cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCC--CeEEe
Q 012367 322 --YLLSCSMDKTVRMWQVGCNQCLNVF-----------DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE--KRVVD 386 (465)
Q Consensus 322 --~l~s~s~DgtV~lWD~~~~~~l~~~-----------~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~--~~~~~ 386 (465)
+|++|..+|.|.+||+.++..+-.+ .|..+|.++.|.+ .-+.=++|+.+..+..|.+.. +.+..
T Consensus 165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dkl~~~Sl~~s~gslq~ 243 (323)
T KOG0322|consen 165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDKLVMYSLNHSTGSLQI 243 (323)
T ss_pred eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCccccceeeeeccccCcccc
Confidence 6789999999999999987433222 3889999999998 666678889999999999853 32221
Q ss_pred ---cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec------CCccc-
Q 012367 387 ---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS------KNYDN- 456 (465)
Q Consensus 387 ---~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~------gs~d~- 456 (465)
..-.+-.|..+.+-||++.+++++.||+||+|..++... +..+.+|. ..|..++|+|+ ++.|.
T Consensus 244 ~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p-LAVLkyHs------agvn~vAfspd~~lmAaaskD~r 316 (323)
T KOG0322|consen 244 RKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP-LAVLKYHS------AGVNAVAFSPDCELMAAASKDAR 316 (323)
T ss_pred cceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCc-hhhhhhhh------cceeEEEeCCCCchhhhccCCce
Confidence 222345688999999999999999999999999987643 33555554 67999999998 45565
Q ss_pred eeeee
Q 012367 457 FRRFQ 461 (465)
Q Consensus 457 ~~~~~ 461 (465)
+-+|.
T Consensus 317 ISLWk 321 (323)
T KOG0322|consen 317 ISLWK 321 (323)
T ss_pred EEeee
Confidence 55554
No 198
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=1.1e-10 Score=119.57 Aligned_cols=164 Identities=18% Similarity=0.169 Sum_probs=115.5
Q ss_pred hhhccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~LaSgs~D---g~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (465)
+.+..|...+.+.+|+|||++||.++.+ ..|.+||+.++...
T Consensus 197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~----------------------------------- 241 (433)
T PRK04922 197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE----------------------------------- 241 (433)
T ss_pred eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-----------------------------------
Confidence 4566788899999999999999988743 46889998764321
Q ss_pred ceeeecCCcceeeeccccceEEEEecCCC-EE-EEEeCCC--eEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEE
Q 012367 293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG 368 (465)
Q Consensus 293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l-~s~s~Dg--tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sg 368 (465)
.+..+.+.....+|+|++ .| ++.+.++ .|.+||+.++.......+.......+|+| ++++|+.+
T Consensus 242 -----------~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~sp-DG~~l~f~ 309 (433)
T PRK04922 242 -----------LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAP-DGKSIYFT 309 (433)
T ss_pred -----------EeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECC-CCCEEEEE
Confidence 111122334467899986 44 4556555 59999999887655445555567889999 99988877
Q ss_pred eC-CCc--EEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCC---cEEEEEecCCcee
Q 012367 369 SI-DGK--VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG---TCHFYKASGNDLK 426 (465)
Q Consensus 369 s~-Dg~--I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG---~v~iwd~~~~~~~ 426 (465)
+. ++. |.++|+.++....+.........++|+|||+.|+..+.++ .|.+||+.+++..
T Consensus 310 sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 310 SDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred ECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence 64 444 7777777776554433334456789999999998876543 5899999877653
No 199
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=1.5e-10 Score=119.88 Aligned_cols=234 Identities=15% Similarity=0.214 Sum_probs=153.6
Q ss_pred ccccchhhhccCCCcEEEEEECCCCC---EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccC----C--CeEEecc
Q 012367 210 TALYTSQEIQAHKGCIWTLKFSPDGR---YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAK----E--GKIKFGK 280 (465)
Q Consensus 210 ~~~~~~~~l~~H~~~I~~l~fspdg~---~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~ 280 (465)
....+...+.+|+.+++.+.+.|... ++.+++.||+|++||...+.................. . .....+.
T Consensus 45 ~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~ 124 (792)
T KOG1963|consen 45 ATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSV 124 (792)
T ss_pred chHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeec
Confidence 34456678899999999999988544 7889999999999999887665444333222111100 0 0000111
Q ss_pred CCCCceeEec---CCce--eee---cCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe------
Q 012367 281 KKSSHVPVVI---PDEV--FQI---EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF------ 346 (465)
Q Consensus 281 ~~~~~~~~~~---~~~~--~~~---~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~------ 346 (465)
.......... .... +.+ ...+...+.+|.. -.+|..++.+.+...-.+..+.+|....+. ....
T Consensus 125 ~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~ 202 (792)
T KOG1963|consen 125 EDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIVHMCKIHIYFVPKHT-KHTSSRDITV 202 (792)
T ss_pred ccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEEEEeeeEEEEEecccc-eeeccchhhh
Confidence 1100000000 0000 000 0111112223333 356777888777777778889999998755 1111
Q ss_pred cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCC-----CeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367 347 DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-----KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS 421 (465)
Q Consensus 347 ~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~-----~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~ 421 (465)
.|.-.++|.+++| +++++++|..||.|.+|.--. .....+.=|...|++++|+++|.+|++|+..|.+-+|.+.
T Consensus 203 ~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 203 HHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 2666789999999 999999999999999995422 1222344488899999999999999999999999999999
Q ss_pred CCceeeeEeeecCcccccCCceeeEEEeecCCc
Q 012367 422 GNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY 454 (465)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~ 454 (465)
+++.++. -.-+..|.+++++|++.+
T Consensus 282 T~~kqfL--------PRLgs~I~~i~vS~ds~~ 306 (792)
T KOG1963|consen 282 TGKKQFL--------PRLGSPILHIVVSPDSDL 306 (792)
T ss_pred CCCcccc--------cccCCeeEEEEEcCCCCe
Confidence 9875432 112478999999999876
No 200
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.31 E-value=3.9e-11 Score=111.14 Aligned_cols=169 Identities=17% Similarity=0.268 Sum_probs=136.3
Q ss_pred cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (465)
Q Consensus 213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (465)
...++++.|...|++|.|+|..+.|+|++.|..-.||....+.
T Consensus 46 ~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~------------------------------------- 88 (361)
T KOG1523|consen 46 EPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG------------------------------------- 88 (361)
T ss_pred eeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC-------------------------------------
Confidence 3458899999999999999999999999999999999874321
Q ss_pred ceeeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEE---e--cCCCceEEEEEccCCCCEEE
Q 012367 293 EVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNV---F--DHHNYVTCVQFNPIDDNYFI 366 (465)
Q Consensus 293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~---~--~h~~~V~~i~fsp~~~~~l~ 366 (465)
.-+|.-.+.-|+...+++.|+|. +.+++||..+.|.||-.+...--.+ + .+...|+++.|+| ++-+++
T Consensus 89 -----~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLla 162 (361)
T KOG1523|consen 89 -----TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLA 162 (361)
T ss_pred -----eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-Ccceec
Confidence 12455556678999999999996 6999999999999998765443222 2 3567899999999 999999
Q ss_pred EEeCCCcEEEEeCC-----C-------------CeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCc
Q 012367 367 SGSIDGKVRIWGVC-----E-------------KRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 424 (465)
Q Consensus 367 sgs~Dg~I~iwd~~-----~-------------~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~ 424 (465)
+||.|++.|||..- . |+++. +....+.|..+.|+|+|..|+-.+.|+++.+=|.....
T Consensus 163 aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 163 AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 99999999999651 1 12222 33566889999999999999999999999999987654
No 201
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.29 E-value=1.5e-10 Score=105.01 Aligned_cols=115 Identities=20% Similarity=0.472 Sum_probs=90.2
Q ss_pred CCCcEEEEEECCCCCEEEEE--eCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec
Q 012367 221 HKGCIWTLKFSPDGRYLASG--GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 298 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaSg--s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (465)
+.++|.+++|+|+|+.||.. ..++.|.+||+..
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~--------------------------------------------- 92 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG--------------------------------------------- 92 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc---------------------------------------------
Confidence 45679999999999986554 4678999999862
Q ss_pred CCcceeeeccccceEEEEecCCC-EEEEEeC---CCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeC----
Q 012367 299 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSM---DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI---- 370 (465)
Q Consensus 299 ~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~---DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~---- 370 (465)
+++..+ +...+..+.|+|+| +|++++. .|.|.+||+++.+.+..+.|.. ++.++|+| +|++|+++..
T Consensus 93 -~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsP-dGr~~~ta~t~~r~ 167 (194)
T PF08662_consen 93 -KKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSP-DGRYLATATTSPRL 167 (194)
T ss_pred -cEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcC-CCCEEEEEEeccce
Confidence 223333 34567889999986 7777664 4679999999999998887765 68999999 9999999875
Q ss_pred --CCcEEEEeCCCCeEE
Q 012367 371 --DGKVRIWGVCEKRVV 385 (465)
Q Consensus 371 --Dg~I~iwd~~~~~~~ 385 (465)
|+.++||+.....+.
T Consensus 168 ~~dng~~Iw~~~G~~l~ 184 (194)
T PF08662_consen 168 RVDNGFKIWSFQGRLLY 184 (194)
T ss_pred eccccEEEEEecCeEeE
Confidence 788999998655443
No 202
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.28 E-value=4.6e-12 Score=129.74 Aligned_cols=226 Identities=15% Similarity=0.264 Sum_probs=145.4
Q ss_pred CCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccc
Q 012367 190 EKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS 269 (465)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~ 269 (465)
+....-.+|+|. ...-.+...+.||.+.|+.++.+.+..++|++|.|..|++|.+..+..+.......+.+..
T Consensus 207 tgsdd~lvKiwS-------~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavta 279 (1113)
T KOG0644|consen 207 TGSDDRLVKIWS-------METARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTA 279 (1113)
T ss_pred ecCccceeeeee-------ccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceee
Confidence 334445556653 2334556778899999999999999999999999999999999987766655555444332
Q ss_pred ccCCCeEEeccCCCCceeEecCC-ceeeecCCcce--------eee----------------ccccceEEEEecCC----
Q 012367 270 NAKEGKIKFGKKKSSHVPVVIPD-EVFQIEESPLQ--------ELH----------------GHKGDVLDLAWSNS---- 320 (465)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------~~~----------------gh~~~V~~l~~s~~---- 320 (465)
......- .........++... ........|.. .+. .....+.+++|...
T Consensus 280 iafsP~~--sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif 357 (1113)
T KOG0644|consen 280 IAFSPRA--SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIF 357 (1113)
T ss_pred eccCccc--cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEE
Confidence 2222111 00111112222222 11111111110 000 00111222222221
Q ss_pred --------CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe--ccc
Q 012367 321 --------NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD--WAD 389 (465)
Q Consensus 321 --------~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~--~~~ 389 (465)
.+.+++-.+..+++|++.+|+.++.. .|.+++..+.++|.+.+...+++.||+..|||+..+..+. ..+
T Consensus 358 ~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g 437 (1113)
T KOG0644|consen 358 VTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG 437 (1113)
T ss_pred EeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc
Confidence 13334445566788888888777776 5889999999999999999999999999999998776554 344
Q ss_pred CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 390 VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 390 ~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
+..+..-+|++||..++....-|.+.|.....++-
T Consensus 438 -h~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 438 -HGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred -cceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 56677789999999999999999999988765444
No 203
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.28 E-value=1.6e-10 Score=113.65 Aligned_cols=134 Identities=14% Similarity=0.261 Sum_probs=105.8
Q ss_pred ccceEEEEecCC--CEEEEEeCCCeEEEEeCCC--------------CeEeEE---ec------------CCCceEEEEE
Q 012367 309 KGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGC--------------NQCLNV---FD------------HHNYVTCVQF 357 (465)
Q Consensus 309 ~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~--------------~~~l~~---~~------------h~~~V~~i~f 357 (465)
...|+++.|-|. +.++.+-.+|.+.+||..- +..... +. ....|...+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 478999999874 5888999999999997521 111111 11 2346788999
Q ss_pred ccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcc
Q 012367 358 NPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK 436 (465)
Q Consensus 358 sp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~ 436 (465)
+| |+.+||+.|.||.+||||..+.+++. ....-+...|++|+|||++|++|+.|-.|.||.+...++. ..-|+
T Consensus 299 S~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV---ARGqG-- 372 (636)
T KOG2394|consen 299 SP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV---ARGQG-- 372 (636)
T ss_pred cC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEE---Eeccc--
Confidence 99 99999999999999999999988775 4456678999999999999999999999999999887663 23333
Q ss_pred cccCCceeeEEEee
Q 012367 437 KTSGNKITGIQGRI 450 (465)
Q Consensus 437 ~~~~~~It~~~f~p 450 (465)
|...|+.++|-|
T Consensus 373 --HkSWVs~VaFDp 384 (636)
T KOG2394|consen 373 --HKSWVSVVAFDP 384 (636)
T ss_pred --cccceeeEeecc
Confidence 447899998885
No 204
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=3.6e-10 Score=115.63 Aligned_cols=164 Identities=16% Similarity=0.060 Sum_probs=113.5
Q ss_pred hhhccCCCcEEEEEECCCCCEEEEEeC---CCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYLASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~LaSgs~---Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (465)
+.+..+...+.+.+|||||+.||..+. +..|.+|++.++...
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~----------------------------------- 236 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----------------------------------- 236 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-----------------------------------
Confidence 445567788999999999998886642 456888888764321
Q ss_pred ceeeecCCcceeeeccccceEEEEecCCC-EEE-EEeCCC--eEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEE
Q 012367 293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG 368 (465)
Q Consensus 293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~-s~s~Dg--tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sg 368 (465)
.+..+.+| +...+|+|++ .|+ +.+.++ .|.+||+.++.......+...+....|+| +++.|+..
T Consensus 237 --------~l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSP-DG~~I~f~ 304 (429)
T PRK03629 237 --------QVASFPRH---NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAYT 304 (429)
T ss_pred --------EccCCCCC---cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECC-CCCEEEEE
Confidence 11122233 3357899987 454 334454 59999999887766655666788999999 99988777
Q ss_pred eCC-Cc--EEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcC---CcEEEEEecCCcee
Q 012367 369 SID-GK--VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT---GTCHFYKASGNDLK 426 (465)
Q Consensus 369 s~D-g~--I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~d---G~v~iwd~~~~~~~ 426 (465)
+.+ +. |.++|+.++....+..........+|+|||+.|+..+.+ ..+.+||+.++...
T Consensus 305 s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~ 368 (429)
T PRK03629 305 SDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ 368 (429)
T ss_pred eCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence 654 44 555577777665544444556778999999998876653 35788898877643
No 205
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.27 E-value=3.4e-10 Score=116.60 Aligned_cols=232 Identities=15% Similarity=0.138 Sum_probs=139.5
Q ss_pred CCCcEEEEEECCC-CCEEEEEeCCCcEEEEecCCceeeeeee---cCCCCcccccCCCeEEeccC---CCCceeEecCCc
Q 012367 221 HKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSF---TDDGGFGSNAKEGKIKFGKK---KSSHVPVVIPDE 293 (465)
Q Consensus 221 H~~~I~~l~fspd-g~~LaSgs~Dg~V~iWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 293 (465)
-..+|+|++|+|. ..+||.|..+|.|-+||+.......... ....+...+ ...++.. ..........+.
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v----~~vvW~~~~~~~~f~s~ssDG~ 316 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPV----TAVVWLQNEHNTEFFSLSSDGS 316 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCe----EEEEEeccCCCCceEEEecCCc
Confidence 4678999999994 5588899999999999998755421100 000000000 0000000 001111111121
Q ss_pred eeeec---------CCcceeee------ccccceEEEEecCC--CEEEEEeCCCeEEEEe---CCCCe-----EeEEe-c
Q 012367 294 VFQIE---------ESPLQELH------GHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQ---VGCNQ-----CLNVF-D 347 (465)
Q Consensus 294 ~~~~~---------~~~~~~~~------gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD---~~~~~-----~l~~~-~ 347 (465)
+..+. ..+..... .-...+++++|.+. ..++.|+.+|.|.-=. ...+. .+..+ .
T Consensus 317 i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~ 396 (555)
T KOG1587|consen 317 ICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFIT 396 (555)
T ss_pred EeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccc
Confidence 11110 00011111 12356888999874 4899999999987733 22222 12122 4
Q ss_pred CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCC-C-CeEEecccCCCCeEEEEEeeCC-CEEEEEEcCCcEEEEEecCCc
Q 012367 348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC-E-KRVVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGND 424 (465)
Q Consensus 348 h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~-~-~~~~~~~~~~~~V~sv~~spdg-~~l~sgs~dG~v~iwd~~~~~ 424 (465)
|.+.|+++.++|....+|.+++ |.+|+||.-. . ..+..+..+...|++++|+|-. ..|+++..||.+.+||+....
T Consensus 397 h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~ 475 (555)
T KOG1587|consen 397 HIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD 475 (555)
T ss_pred cCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc
Confidence 8899999999998888888887 9999999876 3 4444567777889999999965 578888889999999998665
Q ss_pred eeee-EeeecCcccccCCceeeEEEeec-------CCccceeeeecC
Q 012367 425 LKLE-KVDFHDRKKTSGNKITGIQGRIS-------KNYDNFRRFQTP 463 (465)
Q Consensus 425 ~~~~-~~~~~~~~~~~~~~It~~~f~p~-------gs~d~~~~~~~p 463 (465)
.... ..... ....+-+.+++. +..++++++..+
T Consensus 476 ~~Pv~s~~~~------~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 476 EEPVLSQKVC------SPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred cCCccccccc------ccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 4322 22222 233444444443 444567777764
No 206
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.27 E-value=2.5e-11 Score=117.27 Aligned_cols=189 Identities=15% Similarity=0.186 Sum_probs=144.0
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCC--CeEEeccCCCCceeEecCCceeeecCCcce
Q 012367 226 WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKE--GKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 303 (465)
Q Consensus 226 ~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (465)
..+.++.+|++|+.|+.-|.|-.+|+.+....+.........+..... ..+.++.. ... .+|+-.+..++
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK--~y~------yvYD~~GtElH 204 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQK--KYV------YVYDNNGTELH 204 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhh--ceE------EEecCCCcEEe
Confidence 478999999999999999999999999988877665544322211111 11111110 111 11222334455
Q ss_pred eeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCC
Q 012367 304 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 381 (465)
Q Consensus 304 ~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~ 381 (465)
-+..| ..|..+.|-|.. +|++++..|.++.-|+.+|+.+..+. ..+.+..++-+| -...+-+|...|+|.+|....
T Consensus 205 Clk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~s 282 (545)
T KOG1272|consen 205 CLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNS 282 (545)
T ss_pred ehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC-ccceEEEcCCCceEEecCCCC
Confidence 44444 678889999976 67788889999999999999999985 566888889999 778899999999999999987
Q ss_pred CeEE-ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCc
Q 012367 382 KRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 424 (465)
Q Consensus 382 ~~~~-~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~ 424 (465)
...+ .+.-|.+.|.+|++.++|++++|.+.|..|+|||++.-.
T Consensus 283 kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 283 KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc
Confidence 6654 578899999999999999999999999999999999765
No 207
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.26 E-value=3.4e-10 Score=120.66 Aligned_cols=216 Identities=14% Similarity=0.213 Sum_probs=135.1
Q ss_pred ccchhhhccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEecCCceee-------eeeecCCCC---cccccCCCeEEecc
Q 012367 212 LYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAAS-------CKSFTDDGG---FGSNAKEGKIKFGK 280 (465)
Q Consensus 212 ~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~V~iWd~~~~~~~-------~~~~~~~~~---~~~~~~~~~~~~~~ 280 (465)
-.....|+.|...|..++.++.. .+++|||.||+||||+....... +.+...... ...+.......++.
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence 34456778899999999998765 89999999999999998653222 111101111 11112222222221
Q ss_pred CCCCceeEecCC-ceeeecCCcceeeeccc-cceEEE-EecC--CC-EEEEEeCCCeEEEEeCCCCeEeEEec---CCCc
Q 012367 281 KKSSHVPVVIPD-EVFQIEESPLQELHGHK-GDVLDL-AWSN--SN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNY 351 (465)
Q Consensus 281 ~~~~~~~~~~~~-~~~~~~~~~~~~~~gh~-~~V~~l-~~s~--~~-~l~s~s~DgtV~lWD~~~~~~l~~~~---h~~~ 351 (465)
..+......... .+-.......+....+. +.+.++ ++.. .. .|+.+..-+.|..||++....+...+ .++.
T Consensus 1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccc
Confidence 111111111111 01111111111122222 333333 3332 12 68888888999999999887766664 5678
Q ss_pred eEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe--cccCCCCeEEEEEeeCC---CEEEEEE--cCCcEEEEEecCCc
Q 012367 352 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDG---KGFIVGS--ITGTCHFYKASGND 424 (465)
Q Consensus 352 V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~--~~~~~~~V~sv~~spdg---~~l~sgs--~dG~v~iwd~~~~~ 424 (465)
|++++.+| .+++++.|...|.+.+||++-+..+. ..++..+|+.++.+|-. ...++++ ..+.|.+|++.++.
T Consensus 1198 vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1198 VTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred eeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 99999999 99999999999999999999988775 34466788888888743 3444444 47889999999886
Q ss_pred eeee
Q 012367 425 LKLE 428 (465)
Q Consensus 425 ~~~~ 428 (465)
-+..
T Consensus 1277 ~~~v 1280 (1431)
T KOG1240|consen 1277 RQTV 1280 (1431)
T ss_pred ceEE
Confidence 5544
No 208
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=1.3e-10 Score=109.97 Aligned_cols=232 Identities=13% Similarity=0.134 Sum_probs=157.0
Q ss_pred CCCCCcchhhHHhhccccccccccccchhhh-ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCC
Q 012367 188 NSEKPKANKMEVKQNKKKCMEFTALYTSQEI-QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG 266 (465)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~ 266 (465)
..+....-++.+|.-..-. .-...++++.. ..|..-|.|++|....++|++|+.+++|...|+.+.+.+...
T Consensus 71 L~SGGDD~~~~~W~~de~~-~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~------ 143 (609)
T KOG4227|consen 71 LASGGDDMHGRVWNVDELM-VRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVA------ 143 (609)
T ss_pred EeecCCcceeeeechHHHH-hhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeee------
Confidence 3444445555555332211 11122333433 356789999999999999999999999999999874332111
Q ss_pred cccccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecC-CCEEEEEeCCCeEEEEeCCCCe-EeE
Q 012367 267 FGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQ-CLN 344 (465)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~-~~~l~s~s~DgtV~lWD~~~~~-~l~ 344 (465)
.-....+.|..+..+| ++.|++.+.++.|.+||.+..+ .+.
T Consensus 144 -------------------------------------~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~ 186 (609)
T KOG4227|consen 144 -------------------------------------NENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPIS 186 (609)
T ss_pred -------------------------------------cccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCc
Confidence 1112345899999998 5799999999999999998655 222
Q ss_pred Ee---cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeE--Ee---cccCC---CCeEEEEEeeCCCEEEEEEcCC
Q 012367 345 VF---DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV--VD---WADVR---DVISAICYIPDGKGFIVGSITG 413 (465)
Q Consensus 345 ~~---~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~--~~---~~~~~---~~V~sv~~spdg~~l~sgs~dG 413 (465)
.+ ........+.|+|....+|++.+..+-+.+||++...- .. ..+.. ..-.++.|+|+|..|++--..-
T Consensus 187 ~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~ 266 (609)
T KOG4227|consen 187 LVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGK 266 (609)
T ss_pred eeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccC
Confidence 22 35556788999999999999999999999999986532 11 11222 2235688999999988876666
Q ss_pred cEEEEEecCCceeeeEeeecCcccccCCceeeEEEee-----cCCcc-ceeeeecC
Q 012367 414 TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRI-----SKNYD-NFRRFQTP 463 (465)
Q Consensus 414 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p-----~gs~d-~~~~~~~p 463 (465)
.-.+||+....+.+.+.+....--.....|.++.|.- +|+.+ ++.+|..|
T Consensus 267 ~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP 322 (609)
T KOG4227|consen 267 CPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLP 322 (609)
T ss_pred CCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecC
Confidence 6678999887776655542221122335667776653 35555 58999888
No 209
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=1.5e-09 Score=114.27 Aligned_cols=203 Identities=18% Similarity=0.280 Sum_probs=133.8
Q ss_pred hccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCC-CCceeEecCCceee
Q 012367 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKK-SSHVPVVIPDEVFQ 296 (465)
Q Consensus 218 l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 296 (465)
+.+..++-..+.|+|-...++++...-.|+|||.+.+.....+...... ......+.+.... .....+...+++..
T Consensus 1060 ~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~---~t~Vs~l~liNe~D~aLlLtas~dGvIR 1136 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFP---DTRVSDLELINEQDDALLLTASSDGVIR 1136 (1387)
T ss_pred HhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCC---CCccceeeeecccchhheeeeccCceEE
Confidence 3345556778999999889999998889999999887664433322211 1111111111111 11111111111111
Q ss_pred e---------cCCcceee---ec----cccceEEEEecC-CCEEEEEeCCCeEEEEeCCCCeEeEEec--CCCceEEEEE
Q 012367 297 I---------EESPLQEL---HG----HKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQF 357 (465)
Q Consensus 297 ~---------~~~~~~~~---~g----h~~~V~~l~~s~-~~~l~s~s~DgtV~lWD~~~~~~l~~~~--h~~~V~~i~f 357 (465)
+ ..+.+..+ .+ -.+.-.-+.|.. .|+|++++.-..|+|||+....+...+. ...-|+++.-
T Consensus 1137 Iwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~ 1216 (1387)
T KOG1517|consen 1137 IWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSA 1216 (1387)
T ss_pred EecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecc
Confidence 1 00111111 11 111113456664 4788888888999999999988888773 5567888887
Q ss_pred ccCCCCEEEEEeCCCcEEEEeCCCCe----EEecccCCCC--eEEEEEeeCCCE-EEEEEcCCcEEEEEecCC
Q 012367 358 NPIDDNYFISGSIDGKVRIWGVCEKR----VVDWADVRDV--ISAICYIPDGKG-FIVGSITGTCHFYKASGN 423 (465)
Q Consensus 358 sp~~~~~l~sgs~Dg~I~iwd~~~~~----~~~~~~~~~~--V~sv~~spdg~~-l~sgs~dG~v~iwd~~~~ 423 (465)
+-..++.++.|..||.||+||.+... +..+..|... |..+.+.+.|-. |++|+.+|.|++||++..
T Consensus 1217 ~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1217 DLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred cccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence 77678999999999999999997643 3457788877 999999998865 999999999999999984
No 210
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=5e-11 Score=118.34 Aligned_cols=186 Identities=17% Similarity=0.248 Sum_probs=139.5
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367 219 QAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (465)
Q Consensus 219 ~~H~~~I~~l~fspdg~~LaSgs~D---g~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (465)
-.|..+|+.|.||..|.||||...+ ..|.|+++.....
T Consensus 518 I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s--------------------------------------- 558 (733)
T KOG0650|consen 518 IKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS--------------------------------------- 558 (733)
T ss_pred EecCCccceeeeecCCceEEEeccCCCcceEEEEecccccc---------------------------------------
Confidence 3689999999999999999998764 4577777654221
Q ss_pred eecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCc
Q 012367 296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGK 373 (465)
Q Consensus 296 ~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~ 373 (465)
...|.-..+.|.++.|+|.. +|+.++. ..|+|||+..+..++.+ .....|..++.+| .|..|+.|+.|+.
T Consensus 559 ------Q~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli~gs~d~k 630 (733)
T KOG0650|consen 559 ------QSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLILGSYDKK 630 (733)
T ss_pred ------cCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEEEecCCCe
Confidence 11222345678999999975 5555543 68999999887776666 4566899999999 9999999999999
Q ss_pred EEEEeCCCC--eEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec------CCceeeeEeeecCcccccCCceee
Q 012367 374 VRIWGVCEK--RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS------GNDLKLEKVDFHDRKKTSGNKITG 445 (465)
Q Consensus 374 I~iwd~~~~--~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~------~~~~~~~~~~~~~~~~~~~~~It~ 445 (465)
+..||+.-. ....+..|...|++|+||+.-..+++|+.||++.||.-. .+.+.+..-.+.++.+.....|..
T Consensus 631 ~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd 710 (733)
T KOG0650|consen 631 MCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLD 710 (733)
T ss_pred eEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEe
Confidence 999998643 444578899999999999999999999999999988532 222222233445555555556777
Q ss_pred EEEeec
Q 012367 446 IQGRIS 451 (465)
Q Consensus 446 ~~f~p~ 451 (465)
..|+|.
T Consensus 711 ~~wHP~ 716 (733)
T KOG0650|consen 711 TIWHPR 716 (733)
T ss_pred ecccCC
Confidence 777776
No 211
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.25 E-value=1.7e-09 Score=106.96 Aligned_cols=189 Identities=12% Similarity=0.140 Sum_probs=119.2
Q ss_pred CCCcEEEEEECCCCCEEEEEe-CCCcEEEEecCC-ceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec
Q 012367 221 HKGCIWTLKFSPDGRYLASGG-EDGVVRIWHVTS-VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 298 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaSgs-~Dg~V~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (465)
+.+....|+++|++++|+.++ .++.|.+|++.. +....
T Consensus 33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~---------------------------------------- 72 (330)
T PRK11028 33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTF---------------------------------------- 72 (330)
T ss_pred cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEE----------------------------------------
Confidence 345577899999999887664 588899999863 11100
Q ss_pred CCcceeeeccccceEEEEecCCC-EEEEEe-CCCeEEEEeCCC-C---eEeEEecCCCceEEEEEccCCCCEEEEE-eCC
Q 012367 299 ESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVGC-N---QCLNVFDHHNYVTCVQFNPIDDNYFISG-SID 371 (465)
Q Consensus 299 ~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s-~DgtV~lWD~~~-~---~~l~~~~h~~~V~~i~fsp~~~~~l~sg-s~D 371 (465)
+... ...+....++++|++ +|++++ .++.|.+|++.+ + ..+..+.+...+.+++++| ++++++++ ..+
T Consensus 73 ---~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p-~g~~l~v~~~~~ 147 (330)
T PRK11028 73 ---AAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDP-DNRTLWVPCLKE 147 (330)
T ss_pred ---eeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCC-CCCEEEEeeCCC
Confidence 0000 112235678999876 555544 589999999964 2 2333334445577889999 88877554 456
Q ss_pred CcEEEEeCCCC-eEEe------cccCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecC--Cceeee-EeeecCcccccC
Q 012367 372 GKVRIWGVCEK-RVVD------WADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASG--NDLKLE-KVDFHDRKKTSG 440 (465)
Q Consensus 372 g~I~iwd~~~~-~~~~------~~~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~--~~~~~~-~~~~~~~~~~~~ 440 (465)
+.|.+||+.+. .+.. ..........++|+|+|++++++.. ++.|.+|++.. +++... .+..........
T Consensus 148 ~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~ 227 (330)
T PRK11028 148 DRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDT 227 (330)
T ss_pred CEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC
Confidence 99999999763 2211 1122345678999999999988877 89999999984 343322 222111111111
Q ss_pred CceeeEEEeecCCc
Q 012367 441 NKITGIQGRISKNY 454 (465)
Q Consensus 441 ~~It~~~f~p~gs~ 454 (465)
....++.++|++.+
T Consensus 228 ~~~~~i~~~pdg~~ 241 (330)
T PRK11028 228 RWAADIHITPDGRH 241 (330)
T ss_pred ccceeEEECCCCCE
Confidence 23345777887654
No 212
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.25 E-value=5e-10 Score=114.29 Aligned_cols=163 Identities=17% Similarity=0.140 Sum_probs=117.8
Q ss_pred hhhccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~LaSgs~D---g~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (465)
+.+..|...+...+|+|+|++||.++.+ ..|.+||+.++...
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~----------------------------------- 227 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE----------------------------------- 227 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-----------------------------------
Confidence 4455677789999999999999887654 47999998764221
Q ss_pred ceeeecCCcceeeeccccceEEEEecCCC-EE-EEEeCCC--eEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEE
Q 012367 293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG 368 (465)
Q Consensus 293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l-~s~s~Dg--tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sg 368 (465)
.+..+.+.+.+++|+|++ .| ++.+.++ .|.+||+.++.......+........|+| +++.|+..
T Consensus 228 -----------~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~-dg~~l~~~ 295 (417)
T TIGR02800 228 -----------KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSP-DGKSIAFT 295 (417)
T ss_pred -----------EeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECC-CCCEEEEE
Confidence 111233445568899986 34 4555444 58999998876555445555566789999 88888766
Q ss_pred eCC-C--cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCC---cEEEEEecCCce
Q 012367 369 SID-G--KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG---TCHFYKASGNDL 425 (465)
Q Consensus 369 s~D-g--~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG---~v~iwd~~~~~~ 425 (465)
+.. + .|.++|+.++....+..+...+..+.|+|+|+.++.++.++ .|.+||+.++..
T Consensus 296 s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 296 SDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE 358 (417)
T ss_pred ECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe
Confidence 543 3 58888888877666655666778899999999999988776 788888877544
No 213
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=6.3e-10 Score=113.82 Aligned_cols=183 Identities=17% Similarity=0.129 Sum_probs=118.1
Q ss_pred hhhccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~LaSgs~D---g~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (465)
+.+..|...+.+.+|+|||+.||.++.+ ..|.+||+.++...
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~----------------------------------- 233 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR----------------------------------- 233 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-----------------------------------
Confidence 4455788899999999999999887643 35999998764321
Q ss_pred ceeeecCCcceeeeccccceEEEEecCCC-EEE-EEeCCCeEEEEe--CCCCeEeEEecCCCceEEEEEccCCCCEEEEE
Q 012367 293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDKTVRMWQ--VGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG 368 (465)
Q Consensus 293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~-s~s~DgtV~lWD--~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sg 368 (465)
.+....+.+...+|+|++ .|+ +.+.++...||. +..+.......+...+....|+| +++.++..
T Consensus 234 -----------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp-DG~~l~f~ 301 (427)
T PRK02889 234 -----------VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSP-DGRSIYFT 301 (427)
T ss_pred -----------EeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcC-CCCEEEEE
Confidence 111122345578999986 454 667788766664 55454333224555567789999 99887766
Q ss_pred eC-CCcEEEEeC--CCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCC---cEEEEEecCCceeeeEeeecCcccccCCc
Q 012367 369 SI-DGKVRIWGV--CEKRVVDWADVRDVISAICYIPDGKGFIVGSITG---TCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (465)
Q Consensus 369 s~-Dg~I~iwd~--~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 442 (465)
+. ++...||.+ .++...............+|+|||++|+..+.++ .|.+||+.++.... +. .+ ..
T Consensus 302 s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~--lt-~~------~~ 372 (427)
T PRK02889 302 SDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA--LT-DT------TR 372 (427)
T ss_pred ecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE--cc-CC------CC
Confidence 54 456666654 4554433322233345688999999998877654 69999998776432 21 11 12
Q ss_pred eeeEEEeecCCc
Q 012367 443 ITGIQGRISKNY 454 (465)
Q Consensus 443 It~~~f~p~gs~ 454 (465)
.....|+|+|.+
T Consensus 373 ~~~p~~spdg~~ 384 (427)
T PRK02889 373 DESPSFAPNGRY 384 (427)
T ss_pred ccCceECCCCCE
Confidence 345677777655
No 214
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=1.3e-10 Score=111.26 Aligned_cols=190 Identities=20% Similarity=0.295 Sum_probs=132.0
Q ss_pred ccccCCCCCCCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee
Q 012367 181 MSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKS 260 (465)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~ 260 (465)
+..+....+....+..++++ +++.+.+.....+|.+.|.+|.|+|||++||+-+.| ..+||++.++......
T Consensus 152 f~~~gs~latgg~dg~lRv~-------~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 152 FNGDGSKLATGGTDGTLRVW-------EWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred EcCCCCEeeeccccceEEEE-------ecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 34443334444455555544 567777778888999999999999999999999999 8999999986332211
Q ss_pred ecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCCC-----EEEEE-eCCCeEEE
Q 012367 261 FTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-----YLLSC-SMDKTVRM 334 (465)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-----~l~s~-s~DgtV~l 334 (465)
.. ..-......+.|+.++ ++++. ..-+.|++
T Consensus 224 t~-------------------------------------------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~ 260 (398)
T KOG0771|consen 224 TP-------------------------------------------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRL 260 (398)
T ss_pred CC-------------------------------------------cccchhhhhceecccCCCceEEEEEecCCCCceeE
Confidence 10 0011122233343322 22222 22344555
Q ss_pred EeCCCC---eEeEE---ecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe--cccCCCCeEEEEEeeCCCEE
Q 012367 335 WQVGCN---QCLNV---FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGF 406 (465)
Q Consensus 335 WD~~~~---~~l~~---~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~--~~~~~~~V~sv~~spdg~~l 406 (465)
||+... ..++. ......|++++.++ +|++++.|+.||.|-|++..+.+.+. ...|...|+.+.|+||.+++
T Consensus 261 ~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~ 339 (398)
T KOG0771|consen 261 CDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYL 339 (398)
T ss_pred EEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcc
Confidence 554321 12222 23456899999999 99999999999999999999887776 45588899999999999999
Q ss_pred EEEEcCCcEEEEEecC
Q 012367 407 IVGSITGTCHFYKASG 422 (465)
Q Consensus 407 ~sgs~dG~v~iwd~~~ 422 (465)
++-+.+....+..+.-
T Consensus 340 ~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 340 ASVSSDNEAAVTKLAV 355 (398)
T ss_pred cccccCCceeEEEEee
Confidence 9999999999998765
No 215
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=4.1e-10 Score=116.71 Aligned_cols=193 Identities=18% Similarity=0.296 Sum_probs=143.9
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (465)
.|.-.++|.++||+++++|+|..||.|.+|.--.... ..
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-----------------------------------------~~ 241 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-----------------------------------------DS 241 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEecccccc-----------------------------------------cc
Confidence 5777799999999999999999999999997432100 01
Q ss_pred CcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEe
Q 012367 300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 378 (465)
Q Consensus 300 ~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd 378 (465)
...+.++-|...|.+++|+++| +|+||+..|.+.+|.+.+++....-+-.++|..+.++| ++++.+....|+.|.+..
T Consensus 242 ~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~ 320 (792)
T KOG1963|consen 242 ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIK 320 (792)
T ss_pred ccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEe
Confidence 2345677799999999999886 99999999999999999998322226888999999999 999999999999999998
Q ss_pred CCCCeEEe----c--------ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee-EeeecC---cccccCCc
Q 012367 379 VCEKRVVD----W--------ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHD---RKKTSGNK 442 (465)
Q Consensus 379 ~~~~~~~~----~--------~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~-~~~~~~---~~~~~~~~ 442 (465)
..+..... + ....+-.+.++++|.-+.++-.+..|.|.+||+-+....++ ++..++ ........
T Consensus 321 ~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~ 400 (792)
T KOG1963|consen 321 ASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVG 400 (792)
T ss_pred ccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEe
Confidence 76543221 1 11245578899999778889999999999999987766544 332222 11122345
Q ss_pred eeeEEEeecCCc
Q 012367 443 ITGIQGRISKNY 454 (465)
Q Consensus 443 It~~~f~p~gs~ 454 (465)
|+.+..+..|++
T Consensus 401 itav~~~~~gs~ 412 (792)
T KOG1963|consen 401 ITAVARSRFGSW 412 (792)
T ss_pred eeeehhhccceE
Confidence 555555555554
No 216
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=3.6e-10 Score=106.30 Aligned_cols=184 Identities=17% Similarity=0.222 Sum_probs=132.3
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (465)
.+-.+..++|++.-.-+|++..|-+|+||+-.. .+.+.
T Consensus 97 s~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~----------------------------------------- 134 (445)
T KOG2139|consen 97 SEIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTK----------------------------------------- 134 (445)
T ss_pred hhcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCce-----------------------------------------
Confidence 345688999999777899999999999998764 11110
Q ss_pred cceeeeccccceEEEEecCC-C-EEEEEeCCCeEEEEeCCCC------------eEeEEec--CCCceEEEEEccCCCCE
Q 012367 301 PLQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCN------------QCLNVFD--HHNYVTCVQFNPIDDNY 364 (465)
Q Consensus 301 ~~~~~~gh~~~V~~l~~s~~-~-~l~s~s~DgtV~lWD~~~~------------~~l~~~~--h~~~V~~i~fsp~~~~~ 364 (465)
.-......|++++|-|- + .|+.|. -+-|.+|..... .+...++ .+.+|++++|++ |+..
T Consensus 135 ---Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~-dgt~ 209 (445)
T KOG2139|consen 135 ---LKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNE-DGTI 209 (445)
T ss_pred ---ecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcC-CCCE
Confidence 01123468999999985 3 444444 456999976421 1222333 336899999999 9999
Q ss_pred EEEEeC-CCcEEEEeCCCCeEEecc-cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCc
Q 012367 365 FISGSI-DGKVRIWGVCEKRVVDWA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (465)
Q Consensus 365 l~sgs~-Dg~I~iwd~~~~~~~~~~-~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 442 (465)
+++++. |..|.|||..++..+.+. ...+.++-+.|+|||.+|.+++-|+..++|+.....-....+. ....
T Consensus 210 l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l-------gsgr 282 (445)
T KOG2139|consen 210 LVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL-------GSGR 282 (445)
T ss_pred EeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec-------cCCc
Confidence 999887 568999999999887755 4556788999999999999999999999996553322222221 2237
Q ss_pred eeeEEEeecCCcccee
Q 012367 443 ITGIQGRISKNYDNFR 458 (465)
Q Consensus 443 It~~~f~p~gs~d~~~ 458 (465)
|++-.++|.|++.-+.
T Consensus 283 vqtacWspcGsfLLf~ 298 (445)
T KOG2139|consen 283 VQTACWSPCGSFLLFA 298 (445)
T ss_pred eeeeeecCCCCEEEEE
Confidence 8888899998875443
No 217
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=2.2e-10 Score=111.50 Aligned_cols=206 Identities=22% Similarity=0.285 Sum_probs=140.9
Q ss_pred ccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (465)
Q Consensus 212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (465)
+.....|.+|.|.|..|.|+..|..|+|||.|..|.+||+.................... .++.+....... ....
T Consensus 132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQa--KFiP~s~d~ti~--~~s~ 207 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQA--KFIPFSGDRTIV--TSSR 207 (559)
T ss_pred hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhh--hccCCCCCcCce--eccc
Confidence 334467889999999999999999999999999999999988665544433222111110 011111111000 0000
Q ss_pred Cceee---e----cCCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEe----cCCC---ceEEE
Q 012367 292 DEVFQ---I----EESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF----DHHN---YVTCV 355 (465)
Q Consensus 292 ~~~~~---~----~~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~----~h~~---~V~~i 355 (465)
++... + .......+..|.+.|..++.-|+ ..|+|++.|+.|.-.|++++.+...+ .+.. ....|
T Consensus 208 dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~I 287 (559)
T KOG1334|consen 208 DGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTI 287 (559)
T ss_pred cCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeE
Confidence 00000 0 01123456679999999999886 37999999999999999987654444 2333 57899
Q ss_pred EEccCCCCEEEEEeCCCcEEEEeCCCCeE------E-ecc------cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367 356 QFNPIDDNYFISGSIDGKVRIWGVCEKRV------V-DWA------DVRDVISAICYIPDGKGFIVGSITGTCHFYKAS 421 (465)
Q Consensus 356 ~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~------~-~~~------~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~ 421 (465)
+.+|.+.+.|++|+.|-.+|+||.+.-.. + .+. ...-.|++++|+.++.-|+++-.|-.|++|.-.
T Consensus 288 a~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~ 366 (559)
T KOG1334|consen 288 AVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKS 366 (559)
T ss_pred ecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccc
Confidence 99998888999999999999999865221 1 122 234569999999999888888889999999554
No 218
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=3.6e-11 Score=118.21 Aligned_cols=124 Identities=25% Similarity=0.391 Sum_probs=106.8
Q ss_pred cceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe--cCCCceEEEEEccC-CCCEEEEEeCCCcEEE
Q 012367 301 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPI-DDNYFISGSIDGKVRI 376 (465)
Q Consensus 301 ~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~--~h~~~V~~i~fsp~-~~~~l~sgs~Dg~I~i 376 (465)
...++.||++-|.++.|+.+| +|+|||.|..+.|||.-..+.+..+ +|...|.|+.|-|. +.+.+++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 456788999999999999876 8999999999999999988888888 59999999999995 4567889999999999
Q ss_pred EeCCCCe-----------EEecccCCCCeEEEEEeeCC-CEEEEEEcCCcEEEEEecCCc
Q 012367 377 WGVCEKR-----------VVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGND 424 (465)
Q Consensus 377 wd~~~~~-----------~~~~~~~~~~V~sv~~spdg-~~l~sgs~dG~v~iwd~~~~~ 424 (465)
||+...+ ...+.-|...|..++-.|++ ..+.+++.||+++-||++...
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCc
Confidence 9997411 11266788999999999998 789999999999999998743
No 219
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.18 E-value=3.2e-09 Score=104.92 Aligned_cols=184 Identities=15% Similarity=0.210 Sum_probs=115.8
Q ss_pred cEEEEEECCCCCEEEEEeC-CCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcc
Q 012367 224 CIWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 302 (465)
Q Consensus 224 ~I~~l~fspdg~~LaSgs~-Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (465)
....|+|+|+|++|++++. ++.|.+|++.+..... ..+
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~-----------------------------------------~~~ 119 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPV-----------------------------------------API 119 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCC-----------------------------------------Cce
Confidence 4568999999998888774 8899999986421100 001
Q ss_pred eeeeccccceEEEEecCCC-EE-EEEeCCCeEEEEeCCCCeEeE-------EecCCCceEEEEEccCCCCEEEEEeC-CC
Q 012367 303 QELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLN-------VFDHHNYVTCVQFNPIDDNYFISGSI-DG 372 (465)
Q Consensus 303 ~~~~gh~~~V~~l~~s~~~-~l-~s~s~DgtV~lWD~~~~~~l~-------~~~h~~~V~~i~fsp~~~~~l~sgs~-Dg 372 (465)
..+. +......++++|++ ++ ++...++.|.+||+.+...+. ..........+.|+| ++++++++.. ++
T Consensus 120 ~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~p-dg~~lyv~~~~~~ 197 (330)
T PRK11028 120 QIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHP-NQQYAYCVNELNS 197 (330)
T ss_pred eecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECC-CCCEEEEEecCCC
Confidence 1111 11234567889875 44 566677999999997643221 112334567899999 9999887776 89
Q ss_pred cEEEEeCCC--CeE--Ee-ccc------CCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCceeeeEeeecCcccccC
Q 012367 373 KVRIWGVCE--KRV--VD-WAD------VRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSG 440 (465)
Q Consensus 373 ~I~iwd~~~--~~~--~~-~~~------~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~~~~~~~~~~~~~~~~ 440 (465)
.|.+|++.. +.. +. ... +......+.++|+|++++++.. ++.|.+|++......+..... ...+
T Consensus 198 ~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~----~~~~ 273 (330)
T PRK11028 198 SVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGH----QPTE 273 (330)
T ss_pred EEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEE----Eecc
Confidence 999999973 332 21 111 1123446889999999999865 789999999654322211110 0011
Q ss_pred CceeeEEEeecCCc
Q 012367 441 NKITGIQGRISKNY 454 (465)
Q Consensus 441 ~~It~~~f~p~gs~ 454 (465)
....++.++|+|.+
T Consensus 274 ~~p~~~~~~~dg~~ 287 (330)
T PRK11028 274 TQPRGFNIDHSGKY 287 (330)
T ss_pred ccCCceEECCCCCE
Confidence 23446677777644
No 220
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.17 E-value=1.8e-08 Score=93.63 Aligned_cols=175 Identities=15% Similarity=0.214 Sum_probs=113.1
Q ss_pred CcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCC-ceeeeeeecCCCCcccc
Q 012367 192 PKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS-VAASCKSFTDDGGFGSN 270 (465)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~-~~~~~~~~~~~~~~~~~ 270 (465)
..+.++-+|...+.. +..++ .-..+|.+|++.++ .++..- .+.|.||...+ .+..........+...+
T Consensus 72 y~pNkviIWDD~k~~-------~i~el-~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC 140 (346)
T KOG2111|consen 72 YPPNKVIIWDDLKER-------CIIEL-SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLC 140 (346)
T ss_pred CCCceEEEEecccCc-------EEEEE-EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceE
Confidence 456677777643321 11122 45788999999877 555554 46899999873 33333332222111100
Q ss_pred -----cCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCe-EEEEeCCCCeEe
Q 012367 271 -----AKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKT-VRMWQVGCNQCL 343 (465)
Q Consensus 271 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~Dgt-V~lWD~~~~~~l 343 (465)
.....+.+.....+...+..-.. ....+-..+.+|...|.|++.+-+| +++|+|..|| |||||..+|..+
T Consensus 141 ~~~~~~~k~~LafPg~k~GqvQi~dL~~---~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l 217 (346)
T KOG2111|consen 141 SLCPTSNKSLLAFPGFKTGQVQIVDLAS---TKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLL 217 (346)
T ss_pred eecCCCCceEEEcCCCccceEEEEEhhh---cCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEe
Confidence 00111112111112221111100 0111346788999999999999776 8999999998 799999999999
Q ss_pred EEec---CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCC
Q 012367 344 NVFD---HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 381 (465)
Q Consensus 344 ~~~~---h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~ 381 (465)
..+. ....|.|++|+| +..+|+++|..|+|+||.++.
T Consensus 218 ~E~RRG~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 218 QELRRGVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred eeeecCCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeec
Confidence 9995 456899999999 999999999999999998864
No 221
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.17 E-value=5.3e-11 Score=115.02 Aligned_cols=177 Identities=15% Similarity=0.206 Sum_probs=124.1
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcce
Q 012367 224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 303 (465)
Q Consensus 224 ~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (465)
.|..+.|-|..-+|++++..|.++--|+.+++ .+.
T Consensus 211 ~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk---------------------------------------------lVa 245 (545)
T KOG1272|consen 211 RVARLEFLPYHFLLVAASEAGFLKYQDVSTGK---------------------------------------------LVA 245 (545)
T ss_pred chhhhcccchhheeeecccCCceEEEeechhh---------------------------------------------hhH
Confidence 46666666666666666666766666666543 334
Q ss_pred eeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCC
Q 012367 304 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 381 (465)
Q Consensus 304 ~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~ 381 (465)
.+..-.+.+..|+-+|-+ .+-.|...|+|.+|......++..+ .|.++|.+|++.| +|+|++|.+.|..|+|||+++
T Consensus 246 ~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~ 324 (545)
T KOG1272|consen 246 SIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRN 324 (545)
T ss_pred HHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeecc
Confidence 444456777778888854 7778999999999999988876665 7999999999999 999999999999999999997
Q ss_pred CeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec-CCceeeeEeeecCcccccCCceeeEEEeec
Q 012367 382 KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS-GNDLKLEKVDFHDRKKTSGNKITGIQGRIS 451 (465)
Q Consensus 382 ~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~It~~~f~p~ 451 (465)
-..+...........+++|..| +++.+....|.||.=. .+.-.. ...+-. ...+..|.++.|+|-
T Consensus 325 ~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~-~~pYm~--H~~~~~V~~l~FcP~ 390 (545)
T KOG1272|consen 325 FYQLHTYRTPHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHG-ETPYMN--HRCGGPVEDLRFCPY 390 (545)
T ss_pred ccccceeecCCCcccccccccc--ceeeecCCeeeeehhhhcCCCCC-Ccchhh--hccCcccccceeccH
Confidence 6533322225667888888655 5555666689999522 211111 111111 113458999999985
No 222
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.16 E-value=6.2e-09 Score=96.68 Aligned_cols=97 Identities=19% Similarity=0.308 Sum_probs=80.7
Q ss_pred eCCCeEEEEeCCCCeE---eEEecCCCceEEEEEccCCCCEEEEEeCCCc-EEEEeCCCCeEEe-cc--cCCCCeEEEEE
Q 012367 327 SMDKTVRMWQVGCNQC---LNVFDHHNYVTCVQFNPIDDNYFISGSIDGK-VRIWGVCEKRVVD-WA--DVRDVISAICY 399 (465)
Q Consensus 327 s~DgtV~lWD~~~~~~---l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~-I~iwd~~~~~~~~-~~--~~~~~V~sv~~ 399 (465)
-.-|.|+|-|+...+. .-...|...|.|++.+- +|..+||+|..|+ |||||..++..+. +. .....|.+++|
T Consensus 156 ~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF 234 (346)
T KOG2111|consen 156 FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAF 234 (346)
T ss_pred CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEe
Confidence 3457888888876554 33446999999999999 9999999999997 8999999988775 22 24567999999
Q ss_pred eeCCCEEEEEEcCCcEEEEEecCCc
Q 012367 400 IPDGKGFIVGSITGTCHFYKASGND 424 (465)
Q Consensus 400 spdg~~l~sgs~dG~v~iwd~~~~~ 424 (465)
+|++.+|+++|..|+++||.+....
T Consensus 235 Sp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 235 SPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred CCCccEEEEEcCCCeEEEEEeecCC
Confidence 9999999999999999999998654
No 223
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=3.2e-09 Score=100.94 Aligned_cols=201 Identities=15% Similarity=0.232 Sum_probs=138.5
Q ss_pred hhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeee----cCCC--CcccccCCC-eEEeccCCCCceeEe
Q 012367 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSF----TDDG--GFGSNAKEG-KIKFGKKKSSHVPVV 289 (465)
Q Consensus 217 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~----~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~ 289 (465)
....-+++|..++.. +| .|++|-.+|.+.+|....+....... ...+ .+....... .+..+.... .
T Consensus 100 ~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~-----~ 172 (412)
T KOG3881|consen 100 TVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKEN-----I 172 (412)
T ss_pred ccccccccccchhhc-CC-EEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhc-----c
Confidence 344567788888875 33 78888999999999998544221100 0000 000111111 111111111 0
Q ss_pred cCCceeeecCCcceeeecc-----------ccceEEEEecCC---CEEEEEeCCCeEEEEeCCCC-eEeEEec-CCCceE
Q 012367 290 IPDEVFQIEESPLQELHGH-----------KGDVLDLAWSNS---NYLLSCSMDKTVRMWQVGCN-QCLNVFD-HHNYVT 353 (465)
Q Consensus 290 ~~~~~~~~~~~~~~~~~gh-----------~~~V~~l~~s~~---~~l~s~s~DgtV~lWD~~~~-~~l~~~~-h~~~V~ 353 (465)
..-++|++... .+.+.+. .-+++++.|-++ ..+++++.-+.|++||.+.+ +++..|. ...+++
T Consensus 173 n~lkiwdle~~-~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is 251 (412)
T KOG3881|consen 173 NELKIWDLEQS-KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPIS 251 (412)
T ss_pred cceeeeecccc-eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcce
Confidence 01122333222 2222221 235667778654 58999999999999999865 4777775 567899
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe--cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367 354 CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK 426 (465)
Q Consensus 354 ~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~--~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~ 426 (465)
++...| +++++++|..-+.+..||++++++.. +.+..+.|+++..+|.++++++++.|..+||+|+.+.++.
T Consensus 252 ~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 252 STGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred eeeecC-CCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 999999 99999999999999999999998764 7889999999999999999999999999999999986553
No 224
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.15 E-value=2.6e-10 Score=119.97 Aligned_cols=195 Identities=19% Similarity=0.293 Sum_probs=139.3
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcc-----cccCCCeEEecc-CCCCceeEecCCceee
Q 012367 223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFG-----SNAKEGKIKFGK-KKSSHVPVVIPDEVFQ 296 (465)
Q Consensus 223 ~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 296 (465)
+.|....+.-..+.++.+..+..+-+||.................. .......+.+.. .......++.+.
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~---- 163 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH---- 163 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecc----
Confidence 3344466666778899999999999999887544433322222110 011111111111 111122222222
Q ss_pred ecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeE--EecCCCceEEEEEccCCCCEEEEEeCCCc
Q 012367 297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN--VFDHHNYVTCVQFNPIDDNYFISGSIDGK 373 (465)
Q Consensus 297 ~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~--~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~ 373 (465)
...++. .+.||.+.|-++.|+.++ +++++|.|.++|+|++.+.+.+. .|+|+..|+.++|.| + +++|++.|-+
T Consensus 164 ~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n--~i~t~gedct 239 (967)
T KOG0974|consen 164 EDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N--RIITVGEDCT 239 (967)
T ss_pred ccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c--eeEEeccceE
Confidence 123333 688999999999999775 99999999999999999987665 568999999999998 4 9999999999
Q ss_pred EEEEeCCCCeEEecccCC-CCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 374 VRIWGVCEKRVVDWADVR-DVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 374 I~iwd~~~~~~~~~~~~~-~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
.++|+....++..+.+|. ..|..++..++...+++++.||.+++|++.+...
T Consensus 240 crvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~ 292 (967)
T KOG0974|consen 240 CRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGL 292 (967)
T ss_pred EEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcccc
Confidence 999987776666666664 4699999999999999999999999999875443
No 225
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=4.4e-09 Score=99.13 Aligned_cols=201 Identities=15% Similarity=0.299 Sum_probs=134.3
Q ss_pred CCcEEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367 222 KGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (465)
Q Consensus 222 ~~~I~~l~fspdg-~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (465)
...|+||+|-|.+ .-|+.|...| |.||............ ..... ...
T Consensus 140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~---------------~~~s~----------------~~~ 187 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNI---------------RMMST----------------HHL 187 (445)
T ss_pred hcceeEEEeccCCcceeeeeecce-eEEEEcCccccccccc---------------ccccc----------------cch
Confidence 4569999999964 4788888866 8999876421110000 00000 001
Q ss_pred cceeeeccccceEEEEecCCC-EEEEEeC-CCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEE
Q 012367 301 PLQELHGHKGDVLDLAWSNSN-YLLSCSM-DKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377 (465)
Q Consensus 301 ~~~~~~gh~~~V~~l~~s~~~-~l~s~s~-DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iw 377 (465)
.+....|| ..|++|.|++++ .+++++. |..|+|||+.++.++... ...+.++-+.|+| |+.+|..+.-|+..++|
T Consensus 188 qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw 265 (445)
T KOG2139|consen 188 QVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLW 265 (445)
T ss_pred hheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeee
Confidence 12233456 799999999986 6666665 678999999999887776 4566788999999 99999999999999999
Q ss_pred eC-CCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCc------------eeeeEeeec-----Cccccc
Q 012367 378 GV-CEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND------------LKLEKVDFH-----DRKKTS 439 (465)
Q Consensus 378 d~-~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~------------~~~~~~~~~-----~~~~~~ 439 (465)
.. ++-....+.-..+.|...+|+|+|.+|+..... .-++|.+.-.. ..+...+++ ....-.
T Consensus 266 ~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~ 344 (445)
T KOG2139|consen 266 QENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLC 344 (445)
T ss_pred hhcccceecceeccCCceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccc
Confidence 54 444455566667799999999999987765543 33456543111 111112222 112233
Q ss_pred CCceeeEEEeecCCccce
Q 012367 440 GNKITGIQGRISKNYDNF 457 (465)
Q Consensus 440 ~~~It~~~f~p~gs~d~~ 457 (465)
+..+..+++.|+|.|-..
T Consensus 345 cgeaq~lawDpsGeyLav 362 (445)
T KOG2139|consen 345 CGEAQCLAWDPSGEYLAV 362 (445)
T ss_pred cCccceeeECCCCCEEEE
Confidence 577888999999988653
No 226
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=6.8e-10 Score=110.00 Aligned_cols=169 Identities=16% Similarity=0.272 Sum_probs=129.6
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (465)
-..+++++|..++...+||+|+.||.|..||............... +
T Consensus 173 ~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~----------------------------v----- 219 (703)
T KOG2321|consen 173 TDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASS----------------------------V----- 219 (703)
T ss_pred cccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccc----------------------------c-----
Confidence 3458999999999999999999999999999876332211111000 0
Q ss_pred CcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCCC--ceEEEEEccCCCCEEEEEeCCCcEEE
Q 012367 300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHN--YVTCVQFNPIDDNYFISGSIDGKVRI 376 (465)
Q Consensus 300 ~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~~--~V~~i~fsp~~~~~l~sgs~Dg~I~i 376 (465)
.-+........|+++.|+.+| .++.|..+|.|.|||+++.+++..-.|.. +|..+.|.+.++.--+.......++|
T Consensus 220 -~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~ki 298 (703)
T KOG2321|consen 220 -NSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKI 298 (703)
T ss_pred -CCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhh
Confidence 000001122459999999987 78899999999999999999988887765 88999998854433333344678999
Q ss_pred EeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367 377 WGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG 422 (465)
Q Consensus 377 wd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~ 422 (465)
||-.+++..........++.+|+-|++.+++++-.++.+..|-+..
T Consensus 299 Wd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 299 WDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred cccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 9999999988877778899999999999999999999998887653
No 227
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.08 E-value=3.6e-09 Score=99.12 Aligned_cols=167 Identities=20% Similarity=0.322 Sum_probs=111.5
Q ss_pred cccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEec-CCceeeeeeecCCCCcccccCCCeEEeccCCCCcee
Q 012367 209 FTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHV-TSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 287 (465)
Q Consensus 209 ~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (465)
|..+...+....|.+.|..+-|+....++++.+.|..+ .|.. +.+.....+..................+........
T Consensus 101 fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~-~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~ 179 (404)
T KOG1409|consen 101 FNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQF-AWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITM 179 (404)
T ss_pred hhhcchhhhhhhhhcceeeEEecCCceeEEEeccccce-EEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEE
Confidence 34444556677999999999999999999999999866 4543 333222222111111110000011111111111111
Q ss_pred EecCCceeeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCC--eEeEEecCCCceEEEEEccCCCCE
Q 012367 288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCN--QCLNVFDHHNYVTCVQFNPIDDNY 364 (465)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~--~~l~~~~h~~~V~~i~fsp~~~~~ 364 (465)
. .++...-.++.++.+|.+.|.+++|.+. +.|.+|+.|..|.+||+.-. .....+.|.+.|..++..+ .-..
T Consensus 180 l----r~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~-~t~~ 254 (404)
T KOG1409|consen 180 L----KLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ-HTRQ 254 (404)
T ss_pred E----EEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh-hhee
Confidence 1 1122234678889999999999999985 68999999999999999644 4444557999999999988 7888
Q ss_pred EEEEeCCCcEEEEeCCC
Q 012367 365 FISGSIDGKVRIWGVCE 381 (465)
Q Consensus 365 l~sgs~Dg~I~iwd~~~ 381 (465)
+++++.||.|-+|+...
T Consensus 255 l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 255 LISCGEDGGIVVWNMNV 271 (404)
T ss_pred eeeccCCCeEEEEeccc
Confidence 99999999999999854
No 228
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=1.3e-08 Score=104.40 Aligned_cols=164 Identities=16% Similarity=0.132 Sum_probs=110.6
Q ss_pred hhhccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~LaSgs~D---g~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (465)
+.+..|...+...+|+|||++||..+.+ ..|.+|++.++....
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~---------------------------------- 237 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ---------------------------------- 237 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----------------------------------
Confidence 4556778889999999999998877644 358888887643210
Q ss_pred ceeeecCCcceeeeccccceEEEEecCCC-EEE-EEeCCC--eEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEE
Q 012367 293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG 368 (465)
Q Consensus 293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~-s~s~Dg--tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sg 368 (465)
+. ...+.+....|+|++ .|+ +.+.++ .|.+||+.++.......+........|+| +++.++..
T Consensus 238 ---------l~---~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~sp-Dg~~i~f~ 304 (430)
T PRK00178 238 ---------IT---NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGK-DGRTLYFT 304 (430)
T ss_pred ---------cc---CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECC-CCCEEEEE
Confidence 11 112233457899986 444 555555 68888999887655445555667789999 88877665
Q ss_pred eC-CC--cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcC-C--cEEEEEecCCcee
Q 012367 369 SI-DG--KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-G--TCHFYKASGNDLK 426 (465)
Q Consensus 369 s~-Dg--~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~d-G--~v~iwd~~~~~~~ 426 (465)
+. ++ .|.++|+.+++...+..........+|+|||+.|+..+.+ | .|.+||+.++...
T Consensus 305 s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~ 368 (430)
T PRK00178 305 SDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR 368 (430)
T ss_pred ECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE
Confidence 53 33 5777888877765443222334567899999999887753 3 4778888876543
No 229
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=1e-08 Score=104.96 Aligned_cols=156 Identities=15% Similarity=0.135 Sum_probs=103.6
Q ss_pred CCCcEEEEEECCCCCEEEEE-eCCCc--EEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeee
Q 012367 221 HKGCIWTLKFSPDGRYLASG-GEDGV--VRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 297 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaSg-s~Dg~--V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (465)
..+.+..++|+|||+.|+.. +.+|. |.+||+.++..
T Consensus 241 ~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~----------------------------------------- 279 (429)
T PRK03629 241 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI----------------------------------------- 279 (429)
T ss_pred CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-----------------------------------------
Confidence 34445578999999988754 44554 77788765321
Q ss_pred cCCcceeeeccccceEEEEecCCC-EEEEEeCC-Ce--EEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCC--
Q 012367 298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMD-KT--VRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID-- 371 (465)
Q Consensus 298 ~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~D-gt--V~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~D-- 371 (465)
..+..+...+....|+|++ .|+.++.+ +. |.++|+.++.......+...+.+..|+| ++++++..+.+
T Consensus 280 -----~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~Sp-DG~~Ia~~~~~~g 353 (429)
T PRK03629 280 -----RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSS-DGKFMVMVSSNGG 353 (429)
T ss_pred -----EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECC-CCCEEEEEEccCC
Confidence 1122233456778999986 56655543 44 5555777665544434455667889999 99988876654
Q ss_pred -CcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCc---EEEEEecCCc
Q 012367 372 -GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGT---CHFYKASGND 424 (465)
Q Consensus 372 -g~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~---v~iwd~~~~~ 424 (465)
..|.+||+.++....+... .......|+|||+.|+.++.+|. +.++++.+..
T Consensus 354 ~~~I~~~dl~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 354 QQHIAKQDLATGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred CceEEEEECCCCCeEEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence 3588999988876654432 23456889999999999998764 5666765543
No 230
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.06 E-value=3.9e-09 Score=108.09 Aligned_cols=119 Identities=18% Similarity=0.261 Sum_probs=87.9
Q ss_pred eeeccccceEEEEecCCC-EEEEEeCC---CeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEe-CCCcEEEE-
Q 012367 304 ELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS-IDGKVRIW- 377 (465)
Q Consensus 304 ~~~gh~~~V~~l~~s~~~-~l~s~s~D---gtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs-~Dg~I~iw- 377 (465)
.+..|...+.+.+|+|++ .|+.++.+ ..|++||+.+++.............++|+| +++.|+.++ .+|.+.||
T Consensus 198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSP-DG~~La~~~~~~g~~~Iy~ 276 (429)
T PRK01742 198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSP-DGSRLAFASSKDGVLNIYV 276 (429)
T ss_pred EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECC-CCCEEEEEEecCCcEEEEE
Confidence 345677789999999986 67766543 479999998876433322223345789999 998887764 67765554
Q ss_pred -eCCCCeEEecccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecCC
Q 012367 378 -GVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGN 423 (465)
Q Consensus 378 -d~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~~ 423 (465)
|+.++....+..+...+.+.+|+|||+.|+.++ .+|...||++...
T Consensus 277 ~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~ 324 (429)
T PRK01742 277 MGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSAS 324 (429)
T ss_pred EECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECC
Confidence 777777777777777889999999999877665 5788899987643
No 231
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.05 E-value=1.7e-08 Score=100.75 Aligned_cols=189 Identities=15% Similarity=0.231 Sum_probs=128.3
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCe-EE---------------eccCCCCceeEecCCc-
Q 012367 231 SPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK-IK---------------FGKKKSSHVPVVIPDE- 293 (465)
Q Consensus 231 spdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------------~~~~~~~~~~~~~~~~- 293 (465)
.|.+.|+|....||.++||+....+....+.........+..... +. .............+..
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 355679999999999999999876554333222111111000000 00 0000111111111221
Q ss_pred e--eeecCCcce-ee--eccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEE
Q 012367 294 V--FQIEESPLQ-EL--HGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFI 366 (465)
Q Consensus 294 ~--~~~~~~~~~-~~--~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~ 366 (465)
+ +......+. .+ .+|.+.|.++.++.+ +.|.|++.|+.+..|+....+.++.+. ....+.+++.+| |+..++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~-D~~~l~ 160 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISP-DGKILL 160 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcC-CCCEEE
Confidence 1 112222222 22 369999999999875 799999999999999999999988885 566889999999 899999
Q ss_pred EEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeC-----CCEEEEEEc-CCcEEEEEecC
Q 012367 367 SGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPD-----GKGFIVGSI-TGTCHFYKASG 422 (465)
Q Consensus 367 sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spd-----g~~l~sgs~-dG~v~iwd~~~ 422 (465)
+++ +.|++||+.+++++. +.+|.+.|++++|..+ |.+++++.. +.-+.+|-+..
T Consensus 161 ~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 161 TAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 887 789999999998875 8899999999999987 777766543 55567787664
No 232
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.03 E-value=1.8e-08 Score=103.65 Aligned_cols=163 Identities=17% Similarity=0.154 Sum_probs=106.3
Q ss_pred hhhccCCCcEEEEEECCCCCEEEEEeC-CC--cEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYLASGGE-DG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~LaSgs~-Dg--~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (465)
+.+..+...+.+..|||||+.|+..+. ++ .|.+||+.++...
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~----------------------------------- 255 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE----------------------------------- 255 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-----------------------------------
Confidence 345566778999999999998887654 33 4777777654221
Q ss_pred ceeeecCCcceeeeccccceEEEEecCCC-EE-EEEeCCCe--EEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEE
Q 012367 293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKT--VRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG 368 (465)
Q Consensus 293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l-~s~s~Dgt--V~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sg 368 (465)
.+..+.+ .....+|+|++ .| ++.+.++. |.+||+.+++......+.......+|+| ++++++..
T Consensus 256 --------~lt~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSp-DG~~I~f~ 323 (448)
T PRK04792 256 --------KVTSFPG---INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHP-DGKSLIFT 323 (448)
T ss_pred --------EecCCCC---CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECC-CCCEEEEE
Confidence 1111112 22357899986 34 45566664 7888998877655445555677889999 88877665
Q ss_pred eC-CC--cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEc-CCc--EEEEEecCCce
Q 012367 369 SI-DG--KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TGT--CHFYKASGNDL 425 (465)
Q Consensus 369 s~-Dg--~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~-dG~--v~iwd~~~~~~ 425 (465)
+. ++ .|.++|+.+++...+..........+|+|||+.|+..+. ++. |.++|+.++..
T Consensus 324 s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 324 SERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM 386 (448)
T ss_pred ECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe
Confidence 53 33 467778877776554323333456799999999877665 443 44567766654
No 233
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.00 E-value=1.8e-09 Score=113.78 Aligned_cols=118 Identities=24% Similarity=0.452 Sum_probs=100.6
Q ss_pred hhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (465)
Q Consensus 217 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (465)
.+.||.+.|..+.|+.||+++||.|+|.++|+|++++....
T Consensus 170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~--------------------------------------- 210 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL--------------------------------------- 210 (967)
T ss_pred eecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc---------------------------------------
Confidence 57799999999999999999999999999999999975321
Q ss_pred ecCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe-cCC-CceEEEEEccCCCCEEEEEeCCCcE
Q 012367 297 IEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHH-NYVTCVQFNPIDDNYFISGSIDGKV 374 (465)
Q Consensus 297 ~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~-~~V~~i~fsp~~~~~l~sgs~Dg~I 374 (465)
.....||+..|..+++.|. .++|++.|.+.++|+.. +..+.++ .|. ..++.++..+ +....+|++.|+.+
T Consensus 211 -----~~~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~l 282 (967)
T KOG0974|consen 211 -----GCTGFGHSARVWACCFLPN-RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTL 282 (967)
T ss_pred -----CcccccccceeEEEEeccc-eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcC-CceEEEeeccCcch
Confidence 1234589999999999998 99999999999999766 3444466 354 4799999998 88999999999999
Q ss_pred EEEeCCC
Q 012367 375 RIWGVCE 381 (465)
Q Consensus 375 ~iwd~~~ 381 (465)
++||+.+
T Consensus 283 k~~~l~~ 289 (967)
T KOG0974|consen 283 KLWDLNG 289 (967)
T ss_pred hhhhhhc
Confidence 9999854
No 234
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.00 E-value=7.5e-09 Score=96.97 Aligned_cols=211 Identities=19% Similarity=0.297 Sum_probs=136.8
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceee-eeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAAS-CKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (465)
Q Consensus 222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (465)
..-|.+|.|...|.+||||..+|.|.++.-...... ....+.... . ..+-.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqs------------------------h----epEFD 76 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQS------------------------H----EPEFD 76 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeec------------------------c----Ccccc
Confidence 455899999999999999999999999975542110 000000000 0 00000
Q ss_pred cceeeeccccceEEEEecCCC---EEEEEeCCCeEEEEeCCCC-----------------------------------eE
Q 012367 301 PLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCN-----------------------------------QC 342 (465)
Q Consensus 301 ~~~~~~gh~~~V~~l~~s~~~---~l~s~s~DgtV~lWD~~~~-----------------------------------~~ 342 (465)
.+..+ .-...|..+.|.+++ .++....|++|++|-+... .|
T Consensus 77 YLkSl-eieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~p 155 (433)
T KOG1354|consen 77 YLKSL-EIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASP 155 (433)
T ss_pred hhhhh-hhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeee
Confidence 11111 123578889998753 6778889999999987421 12
Q ss_pred eEEec--CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCC----CeEEeccc-----CCCCeEEEEEeeC-CCEEEEEE
Q 012367 343 LNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE----KRVVDWAD-----VRDVISAICYIPD-GKGFIVGS 410 (465)
Q Consensus 343 l~~~~--h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~----~~~~~~~~-----~~~~V~sv~~spd-g~~l~sgs 410 (465)
.+.+. |.--|++|.++. |...++++. |=.|.+|++.- -.++.... ....|++..|+|. .+.++-.+
T Consensus 156 rRv~aNaHtyhiNSIS~Ns-D~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS 233 (433)
T KOG1354|consen 156 RRVYANAHTYHINSISVNS-DKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS 233 (433)
T ss_pred eeeccccceeEeeeeeecC-ccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec
Confidence 23332 666799999999 888888875 78899999852 23444443 3466999999995 46778888
Q ss_pred cCCcEEEEEecCCceeee-------EeeecCc--ccccCCceeeEEEeecCCc------cceeeeecC
Q 012367 411 ITGTCHFYKASGNDLKLE-------KVDFHDR--KKTSGNKITGIQGRISKNY------DNFRRFQTP 463 (465)
Q Consensus 411 ~dG~v~iwd~~~~~~~~~-------~~~~~~~--~~~~~~~It~~~f~p~gs~------d~~~~~~~p 463 (465)
..|+|++-|++...+... ..+...+ .......|..++|+++|.| .++.+|+.+
T Consensus 234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~n 301 (433)
T KOG1354|consen 234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLN 301 (433)
T ss_pred CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEecc
Confidence 899999999995443221 1111111 1112477899999999876 457788763
No 235
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.97 E-value=2.1e-09 Score=100.10 Aligned_cols=137 Identities=17% Similarity=0.320 Sum_probs=106.5
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeee
Q 012367 227 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH 306 (465)
Q Consensus 227 ~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (465)
-.+|||+|+|+|+++.- .+.|=|..+.+.. .+.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~----------------------------------------------qlf 45 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLH----------------------------------------------QLF 45 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHH----------------------------------------------HHH
Confidence 46899999999999876 5667776653221 111
Q ss_pred ccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCC-CEEEEEeCCCcEEEEeCCCC
Q 012367 307 GHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDD-NYFISGSIDGKVRIWGVCEK 382 (465)
Q Consensus 307 gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~-~~l~sgs~Dg~I~iwd~~~~ 382 (465)
.--..|.-|.|..+. .|...+.|+.|.+|++....--..+. ....+..++|+| +| .++.+...|-.|.+|.+.+.
T Consensus 46 ~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSP-dgrhiL~tseF~lriTVWSL~t~ 124 (447)
T KOG4497|consen 46 LCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSP-DGRHILLTSEFDLRITVWSLNTQ 124 (447)
T ss_pred HHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECC-CcceEeeeecceeEEEEEEeccc
Confidence 123567778888764 55667889999999998877666664 667899999999 77 56667778999999999999
Q ss_pred eEEecccCCCCeEEEEEeeCCCEEEEEEc
Q 012367 383 RVVDWADVRDVISAICYIPDGKGFIVGSI 411 (465)
Q Consensus 383 ~~~~~~~~~~~V~sv~~spdg~~l~sgs~ 411 (465)
......-.+..+..++|+|||++.+..+.
T Consensus 125 ~~~~~~~pK~~~kg~~f~~dg~f~ai~sR 153 (447)
T KOG4497|consen 125 KGYLLPHPKTNVKGYAFHPDGQFCAILSR 153 (447)
T ss_pred eeEEecccccCceeEEECCCCceeeeeec
Confidence 88877666677899999999999888874
No 236
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=3.6e-08 Score=101.13 Aligned_cols=158 Identities=17% Similarity=0.234 Sum_probs=105.0
Q ss_pred hccCCCcEEEEEECCCCCEEE-EEeCCC--cEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367 218 IQAHKGCIWTLKFSPDGRYLA-SGGEDG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (465)
Q Consensus 218 l~~H~~~I~~l~fspdg~~La-Sgs~Dg--~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (465)
+..+.+...+++|+|+|+.|+ +.+.+| .|.+||+.++..
T Consensus 243 l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-------------------------------------- 284 (433)
T PRK04922 243 VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-------------------------------------- 284 (433)
T ss_pred eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe--------------------------------------
Confidence 344555566889999999765 556666 488888765321
Q ss_pred eeecCCcceeeeccccceEEEEecCCC-EEEEEe-CCCe--EEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeC
Q 012367 295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKT--VRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI 370 (465)
Q Consensus 295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s-~Dgt--V~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~ 370 (465)
..+..|.......+|+|++ .|+.++ .++. |.++|+.+++......+......++|+| ++++++..+.
T Consensus 285 --------~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~Sp-DG~~Ia~~~~ 355 (433)
T PRK04922 285 --------TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSP-DGKKIAMVHG 355 (433)
T ss_pred --------EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECC-CCCEEEEEEC
Confidence 1222333444567999986 566555 3444 7777877776544433445566789999 9999887654
Q ss_pred CC---cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcC---CcEEEEEecCC
Q 012367 371 DG---KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT---GTCHFYKASGN 423 (465)
Q Consensus 371 Dg---~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~d---G~v~iwd~~~~ 423 (465)
++ .|.+||+.++....+.. ........|+|||+.++..+.+ +.+.++++.+.
T Consensus 356 ~~~~~~I~v~d~~~g~~~~Lt~-~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 356 SGGQYRIAVMDLSTGSVRTLTP-GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred CCCceeEEEEECCCCCeEECCC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 43 59999998887665443 2345678999999988877763 35666777543
No 237
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=8.2e-08 Score=98.61 Aligned_cols=143 Identities=17% Similarity=0.174 Sum_probs=102.4
Q ss_pred eeeeccccceEEEEecCCC-EEEEEeC---CCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEE-EEeCCCc--EE
Q 012367 303 QELHGHKGDVLDLAWSNSN-YLLSCSM---DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDGK--VR 375 (465)
Q Consensus 303 ~~~~gh~~~V~~l~~s~~~-~l~s~s~---DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~-sgs~Dg~--I~ 375 (465)
+.+..|...+...+|+|++ .|+..+. +..|.+||+.+++......+...+....|+| +++.|+ +.+.++. |.
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSP-DGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECC-CCCEEEEEEecCCCceEE
Confidence 4455677889999999986 5665543 4689999999887655545667788899999 887664 5555555 77
Q ss_pred EEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEc-CC--cEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC
Q 012367 376 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK 452 (465)
Q Consensus 376 iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~-dG--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g 452 (465)
+||+.++....+..+.......+|+|||+.|+..+. +| .|++||+.++.... +.... ..+....|+|+|
T Consensus 274 ~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~--lt~~~------~~~~~~~~SpdG 345 (435)
T PRK05137 274 TMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR--ISFGG------GRYSTPVWSPRG 345 (435)
T ss_pred EEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE--eecCC------CcccCeEECCCC
Confidence 789999888777777777888999999999887774 34 57777877665432 22111 234456677766
Q ss_pred Cc
Q 012367 453 NY 454 (465)
Q Consensus 453 s~ 454 (465)
.+
T Consensus 346 ~~ 347 (435)
T PRK05137 346 DL 347 (435)
T ss_pred CE
Confidence 44
No 238
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.94 E-value=3.4e-09 Score=116.75 Aligned_cols=190 Identities=17% Similarity=0.276 Sum_probs=137.8
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC--ceee
Q 012367 219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD--EVFQ 296 (465)
Q Consensus 219 ~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 296 (465)
+.|-..|.+|.=+|...+.+||+.||.|++|....++.+......... ......+...++....+...+ ..|.
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s-----~vtr~~f~~qGnk~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNS-----RVTRSRFNHQGNKFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcc-----hhhhhhhcccCCceeeeccCCceeecc
Confidence 345667899999999999999999999999999887766655443321 111122222222222222222 3455
Q ss_pred ecCCcceeeeccccceEEEEecCCCEEEEE---eCCCeEEEEeCCCC---eEeEEecCCCceEEEEEccCCCCEEEEEeC
Q 012367 297 IEESPLQELHGHKGDVLDLAWSNSNYLLSC---SMDKTVRMWQVGCN---QCLNVFDHHNYVTCVQFNPIDDNYFISGSI 370 (465)
Q Consensus 297 ~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~---s~DgtV~lWD~~~~---~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~ 370 (465)
+..++....+.|.....+..|-. ..++++ +.++.+.+||.--. .++. ..|.+.++++++.| ....|++||.
T Consensus 2280 ~~pk~~~s~qchnk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P-~~qllisggr 2356 (2439)
T KOG1064|consen 2280 ASPKPYTSWQCHNKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAP-KHQLLISGGR 2356 (2439)
T ss_pred cCCcceeccccCCccccceeeee-hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcC-cceEEEecCC
Confidence 56788888899999999988876 334544 44689999997533 2333 46999999999999 9999999999
Q ss_pred CCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 371 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 371 Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
+|.|++||++..++...... ++ ...++++|+..|.++||++..-.+
T Consensus 2357 ~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred cCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEccccch
Confidence 99999999998877653222 44 556899999999999999987643
No 239
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.91 E-value=8.3e-08 Score=98.25 Aligned_cols=156 Identities=21% Similarity=0.251 Sum_probs=101.6
Q ss_pred cCCCcEEEEEECCCCCEEE-EEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec
Q 012367 220 AHKGCIWTLKFSPDGRYLA-SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 298 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~La-Sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (465)
...+.+.+.+|+|||+.|+ +.+.+|...||.+....
T Consensus 237 ~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~------------------------------------------- 273 (427)
T PRK02889 237 NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADG------------------------------------------- 273 (427)
T ss_pred cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCC-------------------------------------------
Confidence 3455677899999999776 56788888888754210
Q ss_pred CCcceeeeccccceEEEEecCCC-EEEEEe-CCCeEEEEe--CCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCC--
Q 012367 299 ESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQ--VGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG-- 372 (465)
Q Consensus 299 ~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s-~DgtV~lWD--~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg-- 372 (465)
.....+..|.+.+....|+|++ .|+..+ .++...||. +.++.......+.......+|+| ++++++..+.++
T Consensus 274 -~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~Sp-DG~~Ia~~s~~~g~ 351 (427)
T PRK02889 274 -SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISP-DGKLLAYISRVGGA 351 (427)
T ss_pred -CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECC-CCCEEEEEEccCCc
Confidence 1122233344445567899986 555444 345666665 45554433333334455688999 999998777654
Q ss_pred -cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCC-c--EEEEEec
Q 012367 373 -KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG-T--CHFYKAS 421 (465)
Q Consensus 373 -~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG-~--v~iwd~~ 421 (465)
.|.+||+.++....+... ......+|+|||+.|+.++.++ . +.+.++.
T Consensus 352 ~~I~v~d~~~g~~~~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 352 FKLYVQDLATGQVTALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSD 403 (427)
T ss_pred EEEEEEECCCCCeEEccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECC
Confidence 599999998876655433 3457789999999988887644 3 4444443
No 240
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.91 E-value=1.9e-08 Score=92.57 Aligned_cols=158 Identities=16% Similarity=0.171 Sum_probs=121.1
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCccee
Q 012367 225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 304 (465)
Q Consensus 225 I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (465)
-.++.|++.+.-++++-.+|.+.+-+..... -+.++.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~-------------------------------------------le~vq~ 160 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMV-------------------------------------------LEKVQT 160 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceee-------------------------------------------eeeccc
Confidence 4578888888888888888888743332211 123557
Q ss_pred eeccccceEEEEecC--CCEEEEEeCCCeEEEEeCC-CCeEeEEe--cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeC
Q 012367 305 LHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVG-CNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379 (465)
Q Consensus 305 ~~gh~~~V~~l~~s~--~~~l~s~s~DgtV~lWD~~-~~~~l~~~--~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~ 379 (465)
+++|.-+.+-.+|+. .+.+.+|+.|+.+.-||++ .++++..- .|...|.+|.-+|..+.+++||+.|-.|++||.
T Consensus 161 wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~Dt 240 (339)
T KOG0280|consen 161 WKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDT 240 (339)
T ss_pred ccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeeh
Confidence 788999999999984 2689999999999999999 44444442 388899999999988999999999999999999
Q ss_pred C-CCeEEecccCCCCeEEEEEeeCC--CEEEEEEcCCcEEEEEecCCcee
Q 012367 380 C-EKRVVDWADVRDVISAICYIPDG--KGFIVGSITGTCHFYKASGNDLK 426 (465)
Q Consensus 380 ~-~~~~~~~~~~~~~V~sv~~spdg--~~l~sgs~dG~v~iwd~~~~~~~ 426 (465)
+ .++++.-....+.|..++++|.- +.|+++-.+| .+|-+.+.+...
T Consensus 241 Rnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e 289 (339)
T KOG0280|consen 241 RNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLE 289 (339)
T ss_pred hcccCccccCccccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccc
Confidence 8 47777766677999999999943 3445554555 577787766554
No 241
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.80 E-value=3.5e-07 Score=93.46 Aligned_cols=114 Identities=11% Similarity=0.141 Sum_probs=77.8
Q ss_pred ceEEEEecCCC-EEEEEe-CCCeEEEE--eCCC-CeEeEEe-cCCCceEEEEEccCCCCEEEEEeCC---CcEEEEeCCC
Q 012367 311 DVLDLAWSNSN-YLLSCS-MDKTVRMW--QVGC-NQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID---GKVRIWGVCE 381 (465)
Q Consensus 311 ~V~~l~~s~~~-~l~s~s-~DgtV~lW--D~~~-~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~D---g~I~iwd~~~ 381 (465)
.....+|+|++ .|+..+ .++...|| ++.. +.....+ .+...+....|+| ++++|+..+.+ ..|.+||+.+
T Consensus 282 ~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 282 TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLAT 360 (428)
T ss_pred CcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCC
Confidence 34567999986 455444 56655555 4432 2223333 3445778899999 99988776543 3699999999
Q ss_pred CeEEecccCCCCeEEEEEeeCCCEEEEEEc---CCcEEEEEecCCce
Q 012367 382 KRVVDWADVRDVISAICYIPDGKGFIVGSI---TGTCHFYKASGNDL 425 (465)
Q Consensus 382 ~~~~~~~~~~~~V~sv~~spdg~~l~sgs~---dG~v~iwd~~~~~~ 425 (465)
++...+......+....|+|||+.|+..+. .+.|.++|+.+++.
T Consensus 361 g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 361 GRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred CCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 887766555556788999999998876543 34677788877654
No 242
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.78 E-value=9.9e-08 Score=89.61 Aligned_cols=204 Identities=15% Similarity=0.304 Sum_probs=130.3
Q ss_pred CCcEEEEEECCCCC--EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367 222 KGCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (465)
Q Consensus 222 ~~~I~~l~fspdg~--~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (465)
...|+.+.|.++++ .++..+.|.+|++|.+................ .......+.+ .+..+. -..+..
T Consensus 84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~-~~~~~~~lr~--------p~~~~~-~~~vea 153 (433)
T KOG1354|consen 84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEG-PPGTITSLRL--------PVEGRH-DLEVEA 153 (433)
T ss_pred hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccC-CCCccceeec--------eeeccc-cceeee
Confidence 45689999999766 67777889999999987643322110000000 0000001110 000000 011122
Q ss_pred Ccceee-eccccceEEEEecCCCEEEEEeCCCeEEEEeCCC-CeEeEEe--c------CCCceEEEEEccCCCCEEEEEe
Q 012367 300 SPLQEL-HGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC-NQCLNVF--D------HHNYVTCVQFNPIDDNYFISGS 369 (465)
Q Consensus 300 ~~~~~~-~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~-~~~l~~~--~------h~~~V~~i~fsp~~~~~l~sgs 369 (465)
.|.+.+ .+|+--|.+|.++.++..+-++.|-.|.||++.- .++.... + -...|++..|+|..-+.|+-.+
T Consensus 154 ~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS 233 (433)
T KOG1354|consen 154 SPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS 233 (433)
T ss_pred eeeeeccccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec
Confidence 334433 4699999999999887555566789999999863 2222222 1 2346899999998889999999
Q ss_pred CCCcEEEEeCCCCeEEe-----------------cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeee
Q 012367 370 IDGKVRIWGVCEKRVVD-----------------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDF 432 (465)
Q Consensus 370 ~Dg~I~iwd~~~~~~~~-----------------~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~ 432 (465)
..|+||+-|++...+.. +...-..|..+.|+++|+++++-+.- +|++||+.-...+......
T Consensus 234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~~v 312 (433)
T KOG1354|consen 234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETYPV 312 (433)
T ss_pred CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEEee
Confidence 99999999998532211 12233568899999999999986554 8999999877777776666
Q ss_pred cCcc
Q 012367 433 HDRK 436 (465)
Q Consensus 433 ~~~~ 436 (465)
|...
T Consensus 313 h~~l 316 (433)
T KOG1354|consen 313 HEYL 316 (433)
T ss_pred hHhH
Confidence 6543
No 243
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.78 E-value=8.6e-08 Score=91.81 Aligned_cols=160 Identities=14% Similarity=0.160 Sum_probs=116.3
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcce
Q 012367 224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 303 (465)
Q Consensus 224 ~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (465)
.++.+.+++.+++||.+..+....++++....... +.+.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~-----------------------------------------kl~~ 102 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGA-----------------------------------------KLLD 102 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcc-----------------------------------------eeee
Confidence 45667788899999999888888888876532100 0000
Q ss_pred ee--eccccceEEEEecCCCE-EEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCC
Q 012367 304 EL--HGHKGDVLDLAWSNSNY-LLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 380 (465)
Q Consensus 304 ~~--~gh~~~V~~l~~s~~~~-l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~ 380 (465)
.. .--...+.-+....... ...++....+.+|....+.+...++|-.-++.|+|+| |+++++++..|.+|||-...
T Consensus 103 ~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~yp 181 (390)
T KOG3914|consen 103 VSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYP 181 (390)
T ss_pred EeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecC
Confidence 00 01112222233222222 2344555677778777788888889999999999999 99999999999999999888
Q ss_pred CCeEEe--cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367 381 EKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK 426 (465)
Q Consensus 381 ~~~~~~--~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~ 426 (465)
..-.+. ..+|+.-|..++..++. .|++|+.|+++++||+.+++..
T Consensus 182 a~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 182 ATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred cccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEecccCCcc
Confidence 776665 56799999999998764 5899999999999999988764
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.77 E-value=4.9e-07 Score=92.24 Aligned_cols=157 Identities=17% Similarity=0.239 Sum_probs=103.8
Q ss_pred hccCCCcEEEEEECCCCCEEE-EEeCCC--cEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367 218 IQAHKGCIWTLKFSPDGRYLA-SGGEDG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (465)
Q Consensus 218 l~~H~~~I~~l~fspdg~~La-Sgs~Dg--~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (465)
+..+.+.+.+++|+|+|+.|+ +.+.++ .|.+|++.+...
T Consensus 229 ~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-------------------------------------- 270 (417)
T TIGR02800 229 VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-------------------------------------- 270 (417)
T ss_pred eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE--------------------------------------
Confidence 344666778899999999765 455555 477777765321
Q ss_pred eeecCCcceeeeccccceEEEEecCCC-EEEEEeC-CC--eEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeC
Q 012367 295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM-DK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI 370 (465)
Q Consensus 295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~-Dg--tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~ 370 (465)
..+..|........|+|++ .|+.++. ++ .|.++|+.+++......+...+..+.|+| ++++++.++.
T Consensus 271 --------~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~sp-dg~~i~~~~~ 341 (417)
T TIGR02800 271 --------TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSP-DGDLIAFVHR 341 (417)
T ss_pred --------EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECC-CCCEEEEEEc
Confidence 1111232333456788875 5655443 33 58888988777655445667788899999 8999988887
Q ss_pred CC---cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCC---cEEEEEecC
Q 012367 371 DG---KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG---TCHFYKASG 422 (465)
Q Consensus 371 Dg---~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG---~v~iwd~~~ 422 (465)
++ .|.+||+.++....+... ......+|+|||+.|+..+.++ .+.+.+..+
T Consensus 342 ~~~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 342 EGGGFNIAVMDLDGGGERVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred cCCceEEEEEeCCCCCeEEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence 76 789999988765444332 2345678999999988887754 344444433
No 245
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=8.9e-07 Score=88.20 Aligned_cols=115 Identities=19% Similarity=0.400 Sum_probs=90.5
Q ss_pred cccceEEEEecCCC---EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCC---CcEEEEeCCC
Q 012367 308 HKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---GKVRIWGVCE 381 (465)
Q Consensus 308 h~~~V~~l~~s~~~---~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~D---g~I~iwd~~~ 381 (465)
..++|.++.|++++ -++.|-+--.|.|+|++ +.++..|. .++=+++-|+| .|++++.+|.+ |.|-|||+.+
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~-egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP-EGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPN 345 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC-CCCccceEECC-CCCEEEEeecCCCCCceEEEeccc
Confidence 36899999999986 45677888999999998 44555553 34557899999 99999988875 7899999999
Q ss_pred CeEEecccCCCCeEEEEEeeCCCEEEEEEc------CCcEEEEEecCCcee
Q 012367 382 KRVVDWADVRDVISAICYIPDGKGFIVGSI------TGTCHFYKASGNDLK 426 (465)
Q Consensus 382 ~~~~~~~~~~~~V~sv~~spdg~~l~sgs~------dG~v~iwd~~~~~~~ 426 (465)
.+.+......+ -+-+.|+|||.+|+|++. |+.++||+..+..+.
T Consensus 346 ~K~i~~~~a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 346 RKLIAKFKAAN-TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred hhhccccccCC-ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceee
Confidence 77665443333 355789999999999885 788999999877654
No 246
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.77 E-value=3.2e-07 Score=98.58 Aligned_cols=235 Identities=12% Similarity=0.122 Sum_probs=143.4
Q ss_pred CCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccc
Q 012367 190 EKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS 269 (465)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~ 269 (465)
+.+.++.+++|+-.+-..+........++.--.+.+.++.+.+.|..+|.|+.||.|++.++............. ....
T Consensus 1066 sgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~-ri~n 1144 (1431)
T KOG1240|consen 1066 SGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQV-RIPN 1144 (1431)
T ss_pred EecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeee-eccc
Confidence 345678889998877666655555556666568889999999999999999999999999987631111100000 0000
Q ss_pred ccCCCe-EE---ecc-CCC-CceeEecCCce--eeecCC-cc--eeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeC
Q 012367 270 NAKEGK-IK---FGK-KKS-SHVPVVIPDEV--FQIEES-PL--QELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQV 337 (465)
Q Consensus 270 ~~~~~~-~~---~~~-~~~-~~~~~~~~~~~--~~~~~~-~~--~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~ 337 (465)
....+. +. +.. ..+ ..........+ |++... .. .......+.|++++.+|. +++++|+..|.+.+||+
T Consensus 1145 ~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDL 1224 (1431)
T KOG1240|consen 1145 LKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDL 1224 (1431)
T ss_pred ccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEe
Confidence 000000 00 000 011 11111111111 111100 01 112234588999999996 59999999999999999
Q ss_pred CCCeEeEEec--CCCceEEEEEccCCC--CEEEEEeC--CCcEEEEeCCCCeEEe--ccc------------------CC
Q 012367 338 GCNQCLNVFD--HHNYVTCVQFNPIDD--NYFISGSI--DGKVRIWGVCEKRVVD--WAD------------------VR 391 (465)
Q Consensus 338 ~~~~~l~~~~--h~~~V~~i~fsp~~~--~~l~sgs~--Dg~I~iwd~~~~~~~~--~~~------------------~~ 391 (465)
+-+.++.... +..+++.+..+|..+ .+.++++. .+.|-+|++.+|.... +.. +.
T Consensus 1225 RF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~ 1304 (1431)
T KOG1240|consen 1225 RFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDS 1304 (1431)
T ss_pred ecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCc
Confidence 9988888775 445788888777555 56666554 6789999998864322 222 11
Q ss_pred CCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 392 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 392 ~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
-.....++.--+..+++|+.|+.|+.||......
T Consensus 1305 ~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1305 LAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred ccceeeecccCCceeeecCCccceeeccCCCccc
Confidence 1112223333445889999999999999875544
No 247
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.76 E-value=1.1e-08 Score=66.95 Aligned_cols=37 Identities=38% Similarity=0.869 Sum_probs=34.8
Q ss_pred chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEe
Q 012367 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWH 250 (465)
Q Consensus 214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd 250 (465)
+.+++.+|.++|++|+|+|++.+||||+.|++|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4577899999999999999999999999999999997
No 248
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=9.9e-08 Score=91.00 Aligned_cols=133 Identities=13% Similarity=0.214 Sum_probs=112.4
Q ss_pred EEEEEECCC--CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcc
Q 012367 225 IWTLKFSPD--GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 302 (465)
Q Consensus 225 I~~l~fspd--g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (465)
++.+.|-+. ...|||++.-+.||+||...+ ..|+
T Consensus 205 ~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q--------------------------------------------RRPV 240 (412)
T KOG3881|consen 205 ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ--------------------------------------------RRPV 240 (412)
T ss_pred eccceecCCCCCceEEEEecceeEEEecCccc--------------------------------------------Ccce
Confidence 567888887 779999999999999999863 2456
Q ss_pred eeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEE-e-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeC
Q 012367 303 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV-F-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379 (465)
Q Consensus 303 ~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~-~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~ 379 (465)
..+.--..+|+++...|++ ++++|..-+.+..+|++.+..+.. + +..+.|.+|..+| ...+++++|.|+.|||+|+
T Consensus 241 ~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp-~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 241 AQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHP-THPVLASCGLDRYVRIHDI 319 (412)
T ss_pred eEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcC-CCceEEeeccceeEEEeec
Confidence 6666667889999988874 889999999999999999998888 4 5788999999999 8899999999999999999
Q ss_pred CCCeEEecccCCCCeEEEEEeeC
Q 012367 380 CEKRVVDWADVRDVISAICYIPD 402 (465)
Q Consensus 380 ~~~~~~~~~~~~~~V~sv~~spd 402 (465)
.+.+++........++.+-+.++
T Consensus 320 ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 320 KTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred ccchhhhhhhhhccccEEEecCC
Confidence 99877766666677777777654
No 249
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.75 E-value=1.1e-07 Score=89.41 Aligned_cols=209 Identities=17% Similarity=0.289 Sum_probs=129.6
Q ss_pred chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCc-eeeeee--ecCCCC--cccccCCCeEEeccCCCCceeE
Q 012367 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV-AASCKS--FTDDGG--FGSNAKEGKIKFGKKKSSHVPV 288 (465)
Q Consensus 214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~-~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 288 (465)
..+.+.||.+.|+....-|-..-+++++.|.++|||--... +.-... ..+... .........+..+.........
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 34678899999999999898888999999999999954331 111000 001000 0111111111121111111111
Q ss_pred ecCCceeeecCCcceeeeccccceEEEEecC-CCEEEEEeCCCeEEEEeCC-----------------------------
Q 012367 289 VIPDEVFQIEESPLQELHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVG----------------------------- 338 (465)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~-~~~l~s~s~DgtV~lWD~~----------------------------- 338 (465)
... ..|+ .....+....|...|..+-|+- ..++++++.|+.+.---.+
T Consensus 96 s~s-edfn-km~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~ 173 (404)
T KOG1409|consen 96 ALS-EDFN-KMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDH 173 (404)
T ss_pred Ehh-hhhh-hcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccc
Confidence 110 0111 0122344455666666666652 3455555555433211111
Q ss_pred ------------CCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCC--CeEEecccCCCCeEEEEEeeCC
Q 012367 339 ------------CNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE--KRVVDWADVRDVISAICYIPDG 403 (465)
Q Consensus 339 ------------~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~--~~~~~~~~~~~~V~sv~~spdg 403 (465)
.-..+..+ +|.+.+++++|.| ....+.+|..|..|.+||+-. +......+|.+.|.++++.+--
T Consensus 174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t 252 (404)
T KOG1409|consen 174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHT 252 (404)
T ss_pred ccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhh
Confidence 11122333 4888999999999 889999999999999999964 4555688999999999999999
Q ss_pred CEEEEEEcCCcEEEEEecCCce
Q 012367 404 KGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 404 ~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
+.+++++.||.|-+|++.....
T Consensus 253 ~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 253 RQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred eeeeeccCCCeEEEEeccceee
Confidence 9999999999999999875443
No 250
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=2.8e-08 Score=98.20 Aligned_cols=170 Identities=14% Similarity=0.220 Sum_probs=125.5
Q ss_pred hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (465)
+.+.||+..|+.++--.+.+-+++++.|++|++|.+....-.. .
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~------------------------~------------ 772 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEI------------------------G------------ 772 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcc------------------------c------------
Confidence 5678999999999887788899999999999999987521000 0
Q ss_pred eecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec---CCCceEEEEEcc-CCCCEEEEE-e
Q 012367 296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNP-IDDNYFISG-S 369 (465)
Q Consensus 296 ~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~---h~~~V~~i~fsp-~~~~~l~sg-s 369 (465)
...+..++..|+.+|.++-|-.+. +++ +.|+.|.+||.--++.+.... .++.+..+..-| .+..+++.| +
T Consensus 773 --tsaCQfTY~aHkk~i~~igfL~~lr~i~--ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcs 848 (1034)
T KOG4190|consen 773 --TSACQFTYQAHKKPIHDIGFLADLRSIA--SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCS 848 (1034)
T ss_pred --cceeeeEhhhccCcccceeeeeccceee--eccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeecc
Confidence 012345677899999999988764 554 458999999998777766431 222233332223 145556655 7
Q ss_pred CCCcEEEEeCCCCeEEe------cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 370 IDGKVRIWGVCEKRVVD------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 370 ~Dg~I~iwd~~~~~~~~------~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
...+|+++|.+.+..+. ..+.+..+.+++..|.|+.+++|-.+|++-+.|.++++.
T Consensus 849 aeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~v 910 (1034)
T KOG4190|consen 849 AESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKV 910 (1034)
T ss_pred chhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCce
Confidence 78999999999876543 233456789999999999999999999999999998874
No 251
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.66 E-value=2.1e-06 Score=96.74 Aligned_cols=175 Identities=12% Similarity=0.186 Sum_probs=116.1
Q ss_pred EEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCccee
Q 012367 226 WTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 304 (465)
Q Consensus 226 ~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (465)
+.|+|+| ++.++++.+.++.|++||..++..... ...+... .......
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~--~G~G~~~---------------------------~~~g~~~-- 734 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVF--SGDGYER---------------------------NLNGSSG-- 734 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEE--ecCCccc---------------------------cCCCCcc--
Confidence 5789999 566777778889999999876533211 0000000 0000000
Q ss_pred eeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeEE-------------ec-C--------CCceEEEEEccC
Q 012367 305 LHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNV-------------FD-H--------HNYVTCVQFNPI 360 (465)
Q Consensus 305 ~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~~-------------~~-h--------~~~V~~i~fsp~ 360 (465)
....-.....|+++|++ ++++.+.++.|++||+.++..... ++ + -.....++++|
T Consensus 735 ~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~- 813 (1057)
T PLN02919 735 TSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK- 813 (1057)
T ss_pred ccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-
Confidence 00112345679999875 566777789999999987653211 11 0 01246889999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEecccC--------------CCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce-
Q 012367 361 DDNYFISGSIDGKVRIWGVCEKRVVDWADV--------------RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL- 425 (465)
Q Consensus 361 ~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~--------------~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~- 425 (465)
+++++++-+.++.|++||..++.+....+. -.....++++++|+.+++-+.+++|++||+.+++.
T Consensus 814 dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~~ 893 (1057)
T PLN02919 814 DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEAA 893 (1057)
T ss_pred CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCccc
Confidence 899999999999999999998877654332 13578899999999888888999999999998765
Q ss_pred eeeEeee
Q 012367 426 KLEKVDF 432 (465)
Q Consensus 426 ~~~~~~~ 432 (465)
+...+.+
T Consensus 894 ~~~~l~~ 900 (1057)
T PLN02919 894 EILTLEL 900 (1057)
T ss_pred eeEeecc
Confidence 3334443
No 252
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.65 E-value=2.1e-06 Score=87.85 Aligned_cols=135 Identities=16% Similarity=0.117 Sum_probs=81.7
Q ss_pred ceEEEEecCCC-EEEEEe-C----CCeEEEEeCCCC---eEeEEecC-CCceEEEEEccCCCCEEEEEe-CCCcEEEE--
Q 012367 311 DVLDLAWSNSN-YLLSCS-M----DKTVRMWQVGCN---QCLNVFDH-HNYVTCVQFNPIDDNYFISGS-IDGKVRIW-- 377 (465)
Q Consensus 311 ~V~~l~~s~~~-~l~s~s-~----DgtV~lWD~~~~---~~l~~~~h-~~~V~~i~fsp~~~~~l~sgs-~Dg~I~iw-- 377 (465)
.....+|+|+| .|+..+ . |..+.+|++..+ ........ .......+|+| +++.|+..+ .+|...||
T Consensus 232 ~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 232 NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEE
Confidence 34457899987 555433 2 334555777653 33333332 23456789999 998777665 46655555
Q ss_pred eCC--CCeEEecccCCCCeEEEEEeeCCCEEEEEEcC---CcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC
Q 012367 378 GVC--EKRVVDWADVRDVISAICYIPDGKGFIVGSIT---GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK 452 (465)
Q Consensus 378 d~~--~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~d---G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g 452 (465)
++. ++....+......+...+|+|||+.|+..+.+ ..|.+||+.+++.....- . ...+.+..|+|+|
T Consensus 311 ~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~--~------~~~~~~p~wSpDG 382 (428)
T PRK01029 311 QIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT--S------PENKESPSWAIDS 382 (428)
T ss_pred ECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC--C------CCCccceEECCCC
Confidence 443 23334444455567889999999998876653 368999998876542211 1 1134456677766
Q ss_pred Cc
Q 012367 453 NY 454 (465)
Q Consensus 453 s~ 454 (465)
.+
T Consensus 383 ~~ 384 (428)
T PRK01029 383 LH 384 (428)
T ss_pred CE
Confidence 43
No 253
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=1.9e-07 Score=95.02 Aligned_cols=173 Identities=17% Similarity=0.288 Sum_probs=125.9
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (465)
.......|+.|+....|+|.||.||.++|-.+.+......... ..... .-
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-------laa~s-----------------------nL 61 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG-------LAAAS-----------------------NL 61 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc-------ccccc-----------------------cc
Confidence 3456789999999999999999999999998876322110000 00000 00
Q ss_pred CcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEe---cCCCceEEEEEccCCCCEEEEEeCCCcEE
Q 012367 300 SPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGKVR 375 (465)
Q Consensus 300 ~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~---~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~ 375 (465)
..-+++.||++.|.-+.|+.. +.|-|+..+|.|.+|-+-.++-.... ...+.|.+++|+. +|..+...-.||.|.
T Consensus 62 smNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavI 140 (1189)
T KOG2041|consen 62 SMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVI 140 (1189)
T ss_pred chhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEE
Confidence 123578899999999999965 57888889999999998776533332 3556789999998 888888888888887
Q ss_pred EEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367 376 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN 423 (465)
Q Consensus 376 iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~ 423 (465)
+=.+...++....-.......+.|++|.+.++.+-.+|.+++||..++
T Consensus 141 VGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgn 188 (1189)
T KOG2041|consen 141 VGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGN 188 (1189)
T ss_pred EEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEeccccc
Confidence 776666555432112223457899999999999999999999998754
No 254
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.63 E-value=1.9e-07 Score=84.65 Aligned_cols=195 Identities=13% Similarity=0.113 Sum_probs=114.6
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCC----CcccccCCCeEEeccCCCCceeEecCCce
Q 012367 219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG----GFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (465)
Q Consensus 219 ~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (465)
.-|+++-.+-+.+-.++-+++++.||.+.+.+.+............. ..........+.. .....+-..+..
T Consensus 86 a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s----~~~g~~n~~d~~ 161 (319)
T KOG4714|consen 86 AKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILS----GGCGNWNAQDNF 161 (319)
T ss_pred eccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEec----CCcceEeeccce
Confidence 34555554555555677899999999999999876211110000000 0000000011110 111111111222
Q ss_pred eeecCCcceeeec---cccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEe--cCCCceEEEEEccCCCCEEEE
Q 012367 295 FQIEESPLQELHG---HKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFIS 367 (465)
Q Consensus 295 ~~~~~~~~~~~~g---h~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~--~h~~~V~~i~fsp~~~~~l~s 367 (465)
+..+..|..++.. -...|.+++-+|. +.+++|+.||.|.+||.+.......+ .|+..++-+.|+|.++..|++
T Consensus 162 ~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft 241 (319)
T KOG4714|consen 162 YANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFT 241 (319)
T ss_pred eeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeE
Confidence 2223334433321 1234888888874 58889999999999999987543333 499999999999999999999
Q ss_pred EeCCCcEEEEeCCCCeEEe---------cc----------------cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEE
Q 012367 368 GSIDGKVRIWGVCEKRVVD---------WA----------------DVRDVISAICYIPDGKGFIVGSITGTCHFYK 419 (465)
Q Consensus 368 gs~Dg~I~iwd~~~~~~~~---------~~----------------~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd 419 (465)
++.||.+-.||..+.-+.. |. .....|++ |.--|..|++|+.-+-|++++
T Consensus 242 ~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sins--fDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 242 CSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINS--FDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeee--eeccCceEEeccccceEEEec
Confidence 9999999999987532210 00 00111222 333467888888888888764
No 255
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.63 E-value=2.5e-07 Score=85.85 Aligned_cols=200 Identities=21% Similarity=0.364 Sum_probs=132.8
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (465)
....|+++.|...|.|||||...|.|.++.-.... .|. .+
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~-~ce---------------------------------------yk 64 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSY-GCE---------------------------------------YK 64 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeeccccc-ccc---------------------------------------hh
Confidence 34569999999999999999999999999765422 111 01
Q ss_pred cceeeecc------------ccceEEEEecCC---CEEEEEeCCCeEEEEeCCCCe------------------------
Q 012367 301 PLQELHGH------------KGDVLDLAWSNS---NYLLSCSMDKTVRMWQVGCNQ------------------------ 341 (465)
Q Consensus 301 ~~~~~~gh------------~~~V~~l~~s~~---~~l~s~s~DgtV~lWD~~~~~------------------------ 341 (465)
-+.++++| ...|..|.|..+ +.++..+.|++|++|.+....
T Consensus 65 f~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~ 144 (460)
T COG5170 65 FFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTST 144 (460)
T ss_pred hhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCH
Confidence 11222222 356788888753 267777899999999864320
Q ss_pred ------------------EeEEe--cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCC--C--eEEecccC-----CC
Q 012367 342 ------------------CLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE--K--RVVDWADV-----RD 392 (465)
Q Consensus 342 ------------------~l~~~--~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~--~--~~~~~~~~-----~~ 392 (465)
+.+.+ .|.--+.++.|+. +...++++. |-.|.+|++.- + .++....| ..
T Consensus 145 ~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLte 222 (460)
T COG5170 145 KELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTE 222 (460)
T ss_pred HHhhcccccccceEEEeccceeccccceeEeeeeeecC-chheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHH
Confidence 00111 1555688899998 777777764 78899998853 2 34455444 35
Q ss_pred CeEEEEEeeCC-CEEEEEEcCCcEEEEEecCCcee-----ee--Eeeec--CcccccCCceeeEEEeecCCc------cc
Q 012367 393 VISAICYIPDG-KGFIVGSITGTCHFYKASGNDLK-----LE--KVDFH--DRKKTSGNKITGIQGRISKNY------DN 456 (465)
Q Consensus 393 ~V~sv~~spdg-~~l~sgs~dG~v~iwd~~~~~~~-----~~--~~~~~--~~~~~~~~~It~~~f~p~gs~------d~ 456 (465)
.|++..|+|.. ..+.-.+..|.|++-|++...+. +. +++.. .........|..++|+++|.| .+
T Consensus 223 VItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdylt 302 (460)
T COG5170 223 VITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLT 302 (460)
T ss_pred HHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccce
Confidence 68999999954 56677788999999999843332 22 22111 111223478999999999854 55
Q ss_pred eeeeec
Q 012367 457 FRRFQT 462 (465)
Q Consensus 457 ~~~~~~ 462 (465)
+.+|++
T Consensus 303 vkiwDv 308 (460)
T COG5170 303 VKIWDV 308 (460)
T ss_pred EEEEec
Confidence 777775
No 256
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.62 E-value=6.9e-06 Score=82.09 Aligned_cols=145 Identities=16% Similarity=0.148 Sum_probs=94.4
Q ss_pred ceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEe-CCCcEEEEeC
Q 012367 302 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS-IDGKVRIWGV 379 (465)
Q Consensus 302 ~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs-~Dg~I~iwd~ 379 (465)
+..+......-..+.++|++ +++.++.|+.|.++|+.+++.++.+........++++| ++++++++. ..+.+.|+|.
T Consensus 29 ~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~-DG~~~~v~n~~~~~v~v~D~ 107 (369)
T PF02239_consen 29 VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSP-DGKYVYVANYEPGTVSVIDA 107 (369)
T ss_dssp EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE---TTTEEEEEEEETTEEEEEET
T ss_pred EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcC-CCCEEEEEecCCCceeEecc
Confidence 33444333333456788875 78888999999999999999999998888889999999 999988776 5899999999
Q ss_pred CCCeEEeccc--------CCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCceeee-EeeecCcccccCCceeeEEEe
Q 012367 380 CEKRVVDWAD--------VRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQGR 449 (465)
Q Consensus 380 ~~~~~~~~~~--------~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~It~~~f~ 449 (465)
.+.+++.... ....+.++..+|....+++.-. .|.|-+.|....+.... .+. ......+..|.
T Consensus 108 ~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~-------~g~~~~D~~~d 180 (369)
T PF02239_consen 108 ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK-------VGRFPHDGGFD 180 (369)
T ss_dssp TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---------TTEEEEEE-
T ss_pred ccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec-------ccccccccccC
Confidence 9988775322 2346788888898886666555 47777777665432221 221 23455667777
Q ss_pred ecCCc
Q 012367 450 ISKNY 454 (465)
Q Consensus 450 p~gs~ 454 (465)
|++.|
T Consensus 181 pdgry 185 (369)
T PF02239_consen 181 PDGRY 185 (369)
T ss_dssp TTSSE
T ss_pred cccce
Confidence 77765
No 257
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.61 E-value=1.8e-06 Score=79.83 Aligned_cols=117 Identities=15% Similarity=0.098 Sum_probs=91.3
Q ss_pred eEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeE--Ee-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCC-CCeEEe
Q 012367 312 VLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN--VF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC-EKRVVD 386 (465)
Q Consensus 312 V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~--~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~-~~~~~~ 386 (465)
-.++.|++.+ .++++-.+|.+.+-+.......+ .. .|.-..+-..|+..+.+++.+||.|+.+..||++ .+..+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 4567788754 68888888888866655554444 33 4888999999998889999999999999999999 333332
Q ss_pred --cccCCCCeEEEEEee-CCCEEEEEEcCCcEEEEEecCCceeee
Q 012367 387 --WADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLE 428 (465)
Q Consensus 387 --~~~~~~~V~sv~~sp-dg~~l~sgs~dG~v~iwd~~~~~~~~~ 428 (465)
..-|...|.++.-+| .+.++++|+.|-+|++||++.-..++.
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~ 248 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF 248 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccc
Confidence 456888999998886 678999999999999999996555543
No 258
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.61 E-value=1.2e-06 Score=81.91 Aligned_cols=194 Identities=12% Similarity=0.165 Sum_probs=122.2
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccc-------------cCCCeEEeccCCCCceeEe
Q 012367 223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN-------------AKEGKIKFGKKKSSHVPVV 289 (465)
Q Consensus 223 ~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~ 289 (465)
-.|..++|+|.+++||.|+.|+.+||-+--+.+....+.+........ .....+.+..........-
T Consensus 211 lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~ 290 (447)
T KOG4497|consen 211 LGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWE 290 (447)
T ss_pred cceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccc
Confidence 468999999999999999999999997754433322222111100000 0000111111110000000
Q ss_pred cCCceeeec--------CCcceeeeccccceEEEEecCCCEEEEEeCC---CeEEEEeCCCCeEeEEecCCCceEEEEEc
Q 012367 290 IPDEVFQIE--------ESPLQELHGHKGDVLDLAWSNSNYLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFN 358 (465)
Q Consensus 290 ~~~~~~~~~--------~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~D---gtV~lWD~~~~~~l~~~~h~~~V~~i~fs 358 (465)
.....+.+. .+|...+..-.-.+.-++|++|.+.++.-.| ..+-+||++.-+....+-...+|....|+
T Consensus 291 ~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~Wd 370 (447)
T KOG4497|consen 291 ESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWD 370 (447)
T ss_pred cchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeC
Confidence 001111111 1222222233456778999999766655555 46999999988777777788899999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEE
Q 012367 359 PIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHF 417 (465)
Q Consensus 359 p~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~i 417 (465)
|...+ ++.+.....+++|......++......-.|..++|+-+|..++..+.|..+..
T Consensus 371 P~~pr-L~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDafc~a 428 (447)
T KOG4497|consen 371 PGRPR-LVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAFCVA 428 (447)
T ss_pred CCCce-EEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCceEEE
Confidence 95554 44444456799999988888776666678999999999999999999987654
No 259
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.60 E-value=2.1e-06 Score=88.09 Aligned_cols=125 Identities=12% Similarity=0.180 Sum_probs=90.4
Q ss_pred CcceeeeccccceEEEEecCCC-EEEEEeCC---CeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEE-EEeCCC--
Q 012367 300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDG-- 372 (465)
Q Consensus 300 ~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~D---gtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~-sgs~Dg-- 372 (465)
...+.+..+...+....|+|++ .|+..+.+ ..|.+||+.++...........+....|+| +++.|+ +.+.++
T Consensus 189 ~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~Sp-DG~~la~~~~~~g~~ 267 (430)
T PRK00178 189 ARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSP-DGSKLAFVLSKDGNP 267 (430)
T ss_pred CCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECC-CCCEEEEEEccCCCc
Confidence 3445566677889999999986 66655533 369999999887655444445566789999 888776 444455
Q ss_pred cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEc-CC--cEEEEEecCCce
Q 012367 373 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDL 425 (465)
Q Consensus 373 ~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~-dG--~v~iwd~~~~~~ 425 (465)
.|.+||+.++....+..+........|+|||+.|+..+. +| .|+++++.+++.
T Consensus 268 ~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 268 EIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred eEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 588889999887777666667778899999998877664 34 466667766654
No 260
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.58 E-value=3.7e-06 Score=86.57 Aligned_cols=118 Identities=18% Similarity=0.234 Sum_probs=82.7
Q ss_pred ccccceEEEEecCCC-EEEEEeC-CC--eEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEE-EeCCCc--EEEEeC
Q 012367 307 GHKGDVLDLAWSNSN-YLLSCSM-DK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS-GSIDGK--VRIWGV 379 (465)
Q Consensus 307 gh~~~V~~l~~s~~~-~l~s~s~-Dg--tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~s-gs~Dg~--I~iwd~ 379 (465)
.+...+.+..|+|++ .|+..+. ++ .|.+||+.+++...............|+| +++.|+. .+.++. |.++|+
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSP-DG~~La~~~~~~g~~~Iy~~dl 293 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSP-DGKKLALVLSKDGQPEIYVVDI 293 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECC-CCCEEEEEEeCCCCeEEEEEEC
Confidence 455678889999986 5554443 33 58899998876543333333445789999 8887654 555664 888899
Q ss_pred CCCeEEecccCCCCeEEEEEeeCCCEEEEEEc-CCc--EEEEEecCCce
Q 012367 380 CEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TGT--CHFYKASGNDL 425 (465)
Q Consensus 380 ~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~-dG~--v~iwd~~~~~~ 425 (465)
.+++...+..+.......+|+|||+.|+..+. +|. |.++|+.+++.
T Consensus 294 ~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~ 342 (448)
T PRK04792 294 ATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV 342 (448)
T ss_pred CCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 88887777666667788999999998877664 444 55556666554
No 261
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.55 E-value=1e-06 Score=84.61 Aligned_cols=159 Identities=15% Similarity=0.331 Sum_probs=104.1
Q ss_pred hhhccCCCcEEEEEECCCCCE-EEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367 216 QEIQAHKGCIWTLKFSPDGRY-LASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~-LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (465)
..+..|.+...+++.++...+ +.....+...++|+............ .........+....+..... .+
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~------~~~~~~sv~v~dkagD~~~~----di 136 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAIS------FIREDTSVLVADKAGDVYSF----DI 136 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceee------eeeccceEEEEeecCCceee----ee
Confidence 345678899999999998873 44445555577777653221111100 01111111111111000000 11
Q ss_pred eeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe--cCCCceEEEEEccCCCCEEEEEeCC
Q 012367 295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSID 371 (465)
Q Consensus 295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~--~h~~~V~~i~fsp~~~~~l~sgs~D 371 (465)
+.....+...+-||-..+++++|+||+ +++++..|..|++-....-..+..| +|...|..++.-+ ++.|++||.|
T Consensus 137 ~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD 214 (390)
T KOG3914|consen 137 LSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGD 214 (390)
T ss_pred ecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCC
Confidence 111224455567999999999999975 8999999999999888776666666 6999999999976 5668999999
Q ss_pred CcEEEEeCCCCeEEe
Q 012367 372 GKVRIWGVCEKRVVD 386 (465)
Q Consensus 372 g~I~iwd~~~~~~~~ 386 (465)
++|++||+.+++...
T Consensus 215 ~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 215 KTLRLWDITSGKLLD 229 (390)
T ss_pred CcEEEEecccCCccc
Confidence 999999999987553
No 262
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.55 E-value=3.5e-06 Score=84.22 Aligned_cols=129 Identities=17% Similarity=0.204 Sum_probs=89.2
Q ss_pred EEEEeCCCeEEEEeCCCCeEeEEecCCCce-EEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEee
Q 012367 323 LLSCSMDKTVRMWQVGCNQCLNVFDHHNYV-TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP 401 (465)
Q Consensus 323 l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V-~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~sp 401 (465)
+++-..++.|.+.|..+.+.+..+.....+ ..+.|+| |++++++.+.||.|.++|+.+.+++...........++++|
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~ 87 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSP 87 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcC
Confidence 456677899999999999999999754444 4578999 99999999999999999999999988777777789999999
Q ss_pred CCCEEEEEEc-CCcEEEEEecCCceeeeEeeecCcc-cccCCceeeEEEeecCC
Q 012367 402 DGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRK-KTSGNKITGIQGRISKN 453 (465)
Q Consensus 402 dg~~l~sgs~-dG~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~It~~~f~p~gs 453 (465)
||++++++.. .+.+.++|..+.+... .+...+.. .....++.++-.+|.+.
T Consensus 88 DG~~~~v~n~~~~~v~v~D~~tle~v~-~I~~~~~~~~~~~~Rv~aIv~s~~~~ 140 (369)
T PF02239_consen 88 DGKYVYVANYEPGTVSVIDAETLEPVK-TIPTGGMPVDGPESRVAAIVASPGRP 140 (369)
T ss_dssp TTTEEEEEEEETTEEEEEETTT--EEE-EEE--EE-TTTS---EEEEEE-SSSS
T ss_pred CCCEEEEEecCCCceeEecccccccee-ecccccccccccCCCceeEEecCCCC
Confidence 9999998874 8999999998866533 33222110 01334666666665544
No 263
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.51 E-value=4.8e-05 Score=75.65 Aligned_cols=188 Identities=16% Similarity=0.176 Sum_probs=118.4
Q ss_pred EEEEEECCCCCEEEEEeC----CCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367 225 IWTLKFSPDGRYLASGGE----DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (465)
Q Consensus 225 I~~l~fspdg~~LaSgs~----Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (465)
-.-|+++|++++|+++.+ +|.|..|.+....... .
T Consensus 39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L-----------------------------------------~ 77 (345)
T PF10282_consen 39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTL-----------------------------------------T 77 (345)
T ss_dssp ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEE-----------------------------------------E
T ss_pred CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCccee-----------------------------------------E
Confidence 456889999999999877 4688888876521000 0
Q ss_pred cceeeeccccceEEEEecCCC-EEEEE-eCCCeEEEEeCCC-CeEeEE---ecC-----------CCceEEEEEccCCCC
Q 012367 301 PLQELHGHKGDVLDLAWSNSN-YLLSC-SMDKTVRMWQVGC-NQCLNV---FDH-----------HNYVTCVQFNPIDDN 363 (465)
Q Consensus 301 ~~~~~~gh~~~V~~l~~s~~~-~l~s~-s~DgtV~lWD~~~-~~~l~~---~~h-----------~~~V~~i~fsp~~~~ 363 (465)
.+............++++|++ +|+++ ..+++|.++++.. +..... +.| .....++.|+| +++
T Consensus 78 ~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~ 156 (345)
T PF10282_consen 78 LLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGR 156 (345)
T ss_dssp EEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSS
T ss_pred EeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCC
Confidence 111222123455678888875 55544 4689999999986 443222 222 24578999999 988
Q ss_pred EEEEEeC-CCcEEEEeCCCCe--EEe----cccCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEec--CCceeee-Eeee
Q 012367 364 YFISGSI-DGKVRIWGVCEKR--VVD----WADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKAS--GNDLKLE-KVDF 432 (465)
Q Consensus 364 ~l~sgs~-Dg~I~iwd~~~~~--~~~----~~~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~--~~~~~~~-~~~~ 432 (465)
++++... ...|.+|++.... +.. ........+.++|+|+|+++++... ++.|.+|++. .+.+... .+..
T Consensus 157 ~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~ 236 (345)
T PF10282_consen 157 FVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIST 236 (345)
T ss_dssp EEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred EEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeee
Confidence 8877654 4579999997654 322 2345567899999999998877665 7889999999 5544333 2222
Q ss_pred cCcccccCCceeeEEEeecCCc
Q 012367 433 HDRKKTSGNKITGIQGRISKNY 454 (465)
Q Consensus 433 ~~~~~~~~~~It~~~f~p~gs~ 454 (465)
..........-.++.++|+|.|
T Consensus 237 ~~~~~~~~~~~~~i~ispdg~~ 258 (345)
T PF10282_consen 237 LPEGFTGENAPAEIAISPDGRF 258 (345)
T ss_dssp CETTSCSSSSEEEEEE-TTSSE
T ss_pred ccccccccCCceeEEEecCCCE
Confidence 2111112246788899999876
No 264
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.49 E-value=1.9e-07 Score=95.47 Aligned_cols=121 Identities=21% Similarity=0.410 Sum_probs=93.6
Q ss_pred hhhccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367 216 QEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (465)
..+.||...|+.+.|+|+.. .|||++.|-.|..||+.+...
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~-------------------------------------- 149 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR-------------------------------------- 149 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc--------------------------------------
Confidence 34679999999999999765 899999999999999987422
Q ss_pred eeecCCcceeeeccccceEEEEecC-CCEEEEEeCCCeEEEEeCCCCe-EeEEe-cCCCceEEEEEccCCCCEEEEEeCC
Q 012367 295 FQIEESPLQELHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQ-CLNVF-DHHNYVTCVQFNPIDDNYFISGSID 371 (465)
Q Consensus 295 ~~~~~~~~~~~~gh~~~V~~l~~s~-~~~l~s~s~DgtV~lWD~~~~~-~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~D 371 (465)
|+..+..-...-..++|+- ++.+++.+..+.|.+||++.|. ++..+ +|-..|+.+.|+......+.+.+.|
T Consensus 150 ------p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d 223 (1081)
T KOG0309|consen 150 ------PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSND 223 (1081)
T ss_pred ------ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCC
Confidence 2222222233445688884 5677777888999999998764 44445 4778899999988667788999999
Q ss_pred CcEEEEeCC
Q 012367 372 GKVRIWGVC 380 (465)
Q Consensus 372 g~I~iwd~~ 380 (465)
++|+.||..
T Consensus 224 ~tvkfw~y~ 232 (1081)
T KOG0309|consen 224 GTVKFWDYS 232 (1081)
T ss_pred Cceeeeccc
Confidence 999999874
No 265
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.49 E-value=5.6e-07 Score=83.56 Aligned_cols=203 Identities=12% Similarity=0.231 Sum_probs=127.6
Q ss_pred CcEEEEEECCCCC--EEEEEeCCCcEEEEecCCceeeeeeecCCCC-c--c---cccCCCeEEeccCCCCceeEecCCce
Q 012367 223 GCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTDDGG-F--G---SNAKEGKIKFGKKKSSHVPVVIPDEV 294 (465)
Q Consensus 223 ~~I~~l~fspdg~--~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~-~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (465)
..|..+.|..++. .++..+.|.+|++|.+.+............. + . .......+.........
T Consensus 86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd--------- 156 (460)
T COG5170 86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHD--------- 156 (460)
T ss_pred HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccc---------
Confidence 4588888876544 6666778999999998764322111111000 0 0 00000111111111110
Q ss_pred eeecCCcceee-eccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCe-E--eEEe-cCC-----CceEEEEEccCCCCE
Q 012367 295 FQIEESPLQEL-HGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ-C--LNVF-DHH-----NYVTCVQFNPIDDNY 364 (465)
Q Consensus 295 ~~~~~~~~~~~-~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~-~--l~~~-~h~-----~~V~~i~fsp~~~~~ 364 (465)
..+..+|.+.+ ..|.--|.++.++.+...+-++.|-.|.+|++.-.. + +-.+ .|. ..|++..|+|...+.
T Consensus 157 ~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~ 236 (460)
T COG5170 157 EIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNV 236 (460)
T ss_pred eEEEeccceeccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcce
Confidence 11112344444 578899999999988755556678899999986322 1 1112 222 358899999977888
Q ss_pred EEEEeCCCcEEEEeCCCCeEE-----------------ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceee
Q 012367 365 FISGSIDGKVRIWGVCEKRVV-----------------DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL 427 (465)
Q Consensus 365 l~sgs~Dg~I~iwd~~~~~~~-----------------~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~ 427 (465)
|.-.+..|.|++-|++...+. -+.+....|..+.|+|+|+++++-+.- +|++||++..+-++
T Consensus 237 fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pi 315 (460)
T COG5170 237 FMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPI 315 (460)
T ss_pred EEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCc
Confidence 888888999999999843211 022334568889999999999887654 89999999888888
Q ss_pred eEeeecCc
Q 012367 428 EKVDFHDR 435 (465)
Q Consensus 428 ~~~~~~~~ 435 (465)
.++.+|..
T Consensus 316 kTi~~h~~ 323 (460)
T COG5170 316 KTIPMHCD 323 (460)
T ss_pred eeechHHH
Confidence 77765543
No 266
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.47 E-value=7.8e-06 Score=74.74 Aligned_cols=130 Identities=14% Similarity=0.064 Sum_probs=96.0
Q ss_pred EEEEEeCCCeEEEEeCCCCeEeEEecCC--CceEEEEEccCCCCEEEEEeCCCcEEEEeCCCC--eEE--ecccCCCCeE
Q 012367 322 YLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK--RVV--DWADVRDVIS 395 (465)
Q Consensus 322 ~l~s~s~DgtV~lWD~~~~~~l~~~~h~--~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~--~~~--~~~~~~~~V~ 395 (465)
-+..++.|.++++.++.-+..... -|. -.+.++.++| ++++.++.+....|-.|.+... .++ ......+.-.
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~-~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF 207 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFA-VHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGF 207 (344)
T ss_pred ceeeccCCcceeEEEEecCcccce-eeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCce
Confidence 477788999999998875433222 222 2388999999 9999999999999999988643 222 2444556667
Q ss_pred EEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCcc
Q 012367 396 AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNYD 455 (465)
Q Consensus 396 sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~d 455 (465)
+..|+.....+|+++.||+|.|||++....+...+.- .+-.+.+.+..+.|+|-|..|
T Consensus 208 ~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss--trp~hnGa~R~c~Fsl~g~lD 265 (344)
T KOG4532|consen 208 YNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISS--TRPHHNGAFRVCRFSLYGLLD 265 (344)
T ss_pred eeeeccCcceEEEEecCCcEEEEEecccccchhhhcc--cCCCCCCceEEEEecCCCcce
Confidence 8899999999999999999999999977665543321 222356789999999866554
No 267
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.47 E-value=3.8e-05 Score=75.49 Aligned_cols=199 Identities=12% Similarity=0.020 Sum_probs=116.5
Q ss_pred EEEEEECCCCCEEEEEe-C-CCcEEEEecCCceeeeeeecCCCCcccccCCC-eEEeccCCCCceeEecCCceeeecCCc
Q 012367 225 IWTLKFSPDGRYLASGG-E-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEG-KIKFGKKKSSHVPVVIPDEVFQIEESP 301 (465)
Q Consensus 225 I~~l~fspdg~~LaSgs-~-Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (465)
-..++++|||++|+... . +..|.|.|+.+.+.......+........... +.........................+
T Consensus 107 ~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~ 186 (352)
T TIGR02658 107 PWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTE 186 (352)
T ss_pred cceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeee
Confidence 34789999999988776 3 79999999999888776666554332222111 111111111111111000000000000
Q ss_pred ceeeeccccceEE-EEecC-CCEEEEEeCCCeEEEEeCCCC-----eEeEEec--------CCCceEEEEEccCCCCEEE
Q 012367 302 LQELHGHKGDVLD-LAWSN-SNYLLSCSMDKTVRMWQVGCN-----QCLNVFD--------HHNYVTCVQFNPIDDNYFI 366 (465)
Q Consensus 302 ~~~~~gh~~~V~~-l~~s~-~~~l~s~s~DgtV~lWD~~~~-----~~l~~~~--------h~~~V~~i~fsp~~~~~l~ 366 (465)
.+.+-...+.. -.+.+ ++..+-.+..|+|.+-|+... ..+..+. ......-++++| +++.++
T Consensus 187 --vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~ly 263 (352)
T TIGR02658 187 --VFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-ARDRIY 263 (352)
T ss_pred --eecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC-CCCEEE
Confidence 11110000000 02344 553333334499999996433 3333321 223344599999 766666
Q ss_pred EEe----------CCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCC-EEEEEE-cCCcEEEEEecCCcee
Q 012367 367 SGS----------IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-GFIVGS-ITGTCHFYKASGNDLK 426 (465)
Q Consensus 367 sgs----------~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~-~l~sgs-~dG~v~iwd~~~~~~~ 426 (465)
... ..+.|.++|..+++++........+..++++|||+ .|++.. .++.|.++|+.+.+..
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 632 12579999999999998777778999999999999 887777 5788999999887663
No 268
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.45 E-value=3e-05 Score=78.90 Aligned_cols=174 Identities=7% Similarity=-0.038 Sum_probs=106.6
Q ss_pred CcEEEEEECCCCCE-EEEEeCC---CcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec
Q 012367 223 GCIWTLKFSPDGRY-LASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 298 (465)
Q Consensus 223 ~~I~~l~fspdg~~-LaSgs~D---g~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (465)
+.+....|+|||+. ++..+.+ ..|.++|+.++...
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~----------------------------------------- 226 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE----------------------------------------- 226 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE-----------------------------------------
Confidence 37889999999984 6644443 45777777664321
Q ss_pred CCcceeeeccccceEEEEecCCC-E-EEEEeCC--CeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeC-CC-
Q 012367 299 ESPLQELHGHKGDVLDLAWSNSN-Y-LLSCSMD--KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI-DG- 372 (465)
Q Consensus 299 ~~~~~~~~gh~~~V~~l~~s~~~-~-l~s~s~D--gtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~-Dg- 372 (465)
.+....+.+....|+|++ . +++.+.+ ..|.++|+.++.......+........|+| |++.|+-.+. .+
T Consensus 227 -----~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~ 300 (419)
T PRK04043 227 -----KIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVE-DDKRIVFVSDRLGY 300 (419)
T ss_pred -----EEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECC-CCCEEEEEECCCCC
Confidence 111123344556799986 3 3344433 568888988876544334443345568999 8887766653 23
Q ss_pred -cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcC---------CcEEEEEecCCceeeeEeeecCcccccCCc
Q 012367 373 -KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT---------GTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (465)
Q Consensus 373 -~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~d---------G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 442 (465)
.|.+.|+.++........... ...|+|||+.|+..+.. ..|.+.|+.++.... +... ..
T Consensus 301 ~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~--LT~~-------~~ 369 (419)
T PRK04043 301 PNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR--LTAN-------GV 369 (419)
T ss_pred ceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE--CCCC-------CC
Confidence 588888888776553322222 24899999988777654 257777877775432 2111 12
Q ss_pred eeeEEEeecCCc
Q 012367 443 ITGIQGRISKNY 454 (465)
Q Consensus 443 It~~~f~p~gs~ 454 (465)
.....|+|+|..
T Consensus 370 ~~~p~~SPDG~~ 381 (419)
T PRK04043 370 NQFPRFSSDGGS 381 (419)
T ss_pred cCCeEECCCCCE
Confidence 234677887764
No 269
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.43 E-value=1.1e-06 Score=86.20 Aligned_cols=210 Identities=19% Similarity=0.257 Sum_probs=131.6
Q ss_pred hhhccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC--
Q 012367 216 QEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD-- 292 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 292 (465)
..+..|.++|.-++.-|+.. -|.|+|+|+.|.-.|+........................+...........+...+
T Consensus 226 ~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf 305 (559)
T KOG1334|consen 226 KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQF 305 (559)
T ss_pred eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhh
Confidence 34567999999999999755 799999999999999876544332221111000000000011111111011110000
Q ss_pred -ceeeec-------CCcceeee------ccccceEEEEecCC-CEEEEEeCCCeEEEEeCC--CC----------eEeEE
Q 012367 293 -EVFQIE-------ESPLQELH------GHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVG--CN----------QCLNV 345 (465)
Q Consensus 293 -~~~~~~-------~~~~~~~~------gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~--~~----------~~l~~ 345 (465)
.++... ..++..+. ...-.|++++++.+ +-|+++..|-.|+++.-. .| ..++.
T Consensus 306 ~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~ 385 (559)
T KOG1334|consen 306 ARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKR 385 (559)
T ss_pred hhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccch
Confidence 111110 01122222 22356899999954 578888899999999532 22 11222
Q ss_pred -e-cCCC--ceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEe
Q 012367 346 -F-DHHN--YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKA 420 (465)
Q Consensus 346 -~-~h~~--~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~ 420 (465)
+ +|.+ .|.++-|--....|+++||.-|.|.||+-.+++++. +.+....|+|+.-+|--..||+.+.|.-|+||-.
T Consensus 386 vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 386 VYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred hhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence 3 3443 578887643389999999999999999999999887 4445558999999999999999999999999987
Q ss_pred cCCce
Q 012367 421 SGNDL 425 (465)
Q Consensus 421 ~~~~~ 425 (465)
.+...
T Consensus 466 ~~~er 470 (559)
T KOG1334|consen 466 LTAER 470 (559)
T ss_pred Ccccc
Confidence 54433
No 270
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.39 E-value=1.1e-06 Score=57.30 Aligned_cols=38 Identities=34% Similarity=0.936 Sum_probs=34.3
Q ss_pred CeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEe
Q 012367 340 NQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 378 (465)
Q Consensus 340 ~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd 378 (465)
++++..+ .|...|++++|+| ++++|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 3567777 5889999999999 899999999999999997
No 271
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.39 E-value=0.00013 Score=72.46 Aligned_cols=193 Identities=13% Similarity=0.183 Sum_probs=116.5
Q ss_pred cEEEEEECCCCCEEEEEe-CCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcc
Q 012367 224 CIWTLKFSPDGRYLASGG-EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 302 (465)
Q Consensus 224 ~I~~l~fspdg~~LaSgs-~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (465)
.-..++++|++++|+++. .+|.|.++++............. . ... ....+.
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~------------~------------~~g----~g~~~~ 139 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTV------------R------------HEG----SGPNPD 139 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEE------------E------------SEE----EESSTT
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeec------------c------------cCC----CCCccc
Confidence 345799999999999887 58999999998632111100000 0 000 000000
Q ss_pred eeeeccccceEEEEecCCC-EEEE-EeCCCeEEEEeCCCCe--Ee--EE--ecCCCceEEEEEccCCCCEEEEE-eCCCc
Q 012367 303 QELHGHKGDVLDLAWSNSN-YLLS-CSMDKTVRMWQVGCNQ--CL--NV--FDHHNYVTCVQFNPIDDNYFISG-SIDGK 373 (465)
Q Consensus 303 ~~~~gh~~~V~~l~~s~~~-~l~s-~s~DgtV~lWD~~~~~--~l--~~--~~h~~~V~~i~fsp~~~~~l~sg-s~Dg~ 373 (465)
+ .-.....++.++|++ ++++ .-....|.+|++.... .. .. +........+.|+| ++++++.. -.++.
T Consensus 140 r---q~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~ 215 (345)
T PF10282_consen 140 R---QEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNT 215 (345)
T ss_dssp T---TSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTE
T ss_pred c---cccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCc
Confidence 0 112345678899985 4444 3445689999997654 32 22 24556789999999 87776554 55788
Q ss_pred EEEEeCC--CCeEEe-----cc--c--CCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEec--CCceeee-EeeecCcccc
Q 012367 374 VRIWGVC--EKRVVD-----WA--D--VRDVISAICYIPDGKGFIVGSI-TGTCHFYKAS--GNDLKLE-KVDFHDRKKT 438 (465)
Q Consensus 374 I~iwd~~--~~~~~~-----~~--~--~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~--~~~~~~~-~~~~~~~~~~ 438 (465)
|.++++. ++.+.. .. + .......|+++|||++|+++.. .+.|.+|+++ ++++... .+...
T Consensus 216 v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~----- 290 (345)
T PF10282_consen 216 VSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG----- 290 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES-----
T ss_pred EEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC-----
Confidence 9999987 443321 11 1 1236889999999999888775 6789999994 3455544 22222
Q ss_pred cCCceeeEEEeecCCc
Q 012367 439 SGNKITGIQGRISKNY 454 (465)
Q Consensus 439 ~~~~It~~~f~p~gs~ 454 (465)
+..-.++.++|+|.+
T Consensus 291 -G~~Pr~~~~s~~g~~ 305 (345)
T PF10282_consen 291 -GKFPRHFAFSPDGRY 305 (345)
T ss_dssp -SSSEEEEEE-TTSSE
T ss_pred -CCCccEEEEeCCCCE
Confidence 345778888888765
No 272
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.39 E-value=0.00013 Score=69.74 Aligned_cols=194 Identities=16% Similarity=0.202 Sum_probs=129.5
Q ss_pred hccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEecCCc--eeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367 218 IQAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSV--AASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (465)
Q Consensus 218 l~~H~~~I~~l~fspdg~~LaSgs~D---g~V~iWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (465)
+-++.+..+=|+|+|++++|+++-.+ |.|-.|.+... ......
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln-------------------------------- 82 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLN-------------------------------- 82 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEee--------------------------------
Confidence 34677889999999999999998655 67777776642 111000
Q ss_pred ceeeecCCcceeeeccccceEEEEecCCC-EEEEEe-CCCeEEEEeCCC-CeE---eEEecCCCc----------eEEEE
Q 012367 293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVGC-NQC---LNVFDHHNY----------VTCVQ 356 (465)
Q Consensus 293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s-~DgtV~lWD~~~-~~~---l~~~~h~~~----------V~~i~ 356 (465)
.....| .+-+.+++++++ +|+++. .-|.|.++-++. |.. +..+.|.+. +.+..
T Consensus 83 ---------~~~~~g--~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~ 151 (346)
T COG2706 83 ---------RQTLPG--SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSAN 151 (346)
T ss_pred ---------ccccCC--CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceee
Confidence 011112 222678888876 555554 458899998865 432 334456555 88999
Q ss_pred EccCCCCEEEEEeCC-CcEEEEeCCCCeEEe----cccCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCceeeeEe
Q 012367 357 FNPIDDNYFISGSID-GKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKV 430 (465)
Q Consensus 357 fsp~~~~~l~sgs~D-g~I~iwd~~~~~~~~----~~~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~~~~~~ 430 (465)
|.| +++++++.... -.|.+|++..+.+.. ........+.|.|+|++++..+.+. +++|.+|........++.+
T Consensus 152 ~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~l 230 (346)
T COG2706 152 FTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEEL 230 (346)
T ss_pred eCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEe
Confidence 999 99999888653 469999999876553 2234566889999999999888776 9999999999853333322
Q ss_pred ee---cCcccccCCceeeEEEeecCCcc
Q 012367 431 DF---HDRKKTSGNKITGIQGRISKNYD 455 (465)
Q Consensus 431 ~~---~~~~~~~~~~It~~~f~p~gs~d 455 (465)
.. -..--...+.-..+.++|+|.|.
T Consensus 231 Q~i~tlP~dF~g~~~~aaIhis~dGrFL 258 (346)
T COG2706 231 QTIDTLPEDFTGTNWAAAIHISPDGRFL 258 (346)
T ss_pred eeeccCccccCCCCceeEEEECCCCCEE
Confidence 11 11112234667777888887763
No 273
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.37 E-value=5.4e-06 Score=83.24 Aligned_cols=115 Identities=18% Similarity=0.234 Sum_probs=94.4
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec
Q 012367 219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 298 (465)
Q Consensus 219 ~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (465)
..|-+.|+++.++.+-..|.|++.|+.|..|+......
T Consensus 99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~------------------------------------------ 136 (541)
T KOG4547|consen 99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI------------------------------------------ 136 (541)
T ss_pred CCCCCcceeeecccccCceEecCCceeEEEEeccccee------------------------------------------
Confidence 37999999999999999999999999999999987533
Q ss_pred CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCC-----CCEEEE-EeC
Q 012367 299 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPID-----DNYFIS-GSI 370 (465)
Q Consensus 299 ~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~-----~~~l~s-gs~ 370 (465)
++.+.+.+..+.+++++|++ .|++++ ++|++||+.+++.+..| +|.++|.+++|-- . |.++.+ ...
T Consensus 137 ---~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~-~~~g~~G~~vLssa~~ 210 (541)
T KOG4547|consen 137 ---IRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTT-LIDGIIGKYVLSSAAA 210 (541)
T ss_pred ---eeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEE-eccccccceeeecccc
Confidence 34455667788899999985 777776 78999999999999999 6889999999977 4 455544 455
Q ss_pred CCcEEEEeCCC
Q 012367 371 DGKVRIWGVCE 381 (465)
Q Consensus 371 Dg~I~iwd~~~ 381 (465)
+..+.+|-+..
T Consensus 211 ~r~i~~w~v~~ 221 (541)
T KOG4547|consen 211 ERGITVWVVEK 221 (541)
T ss_pred ccceeEEEEEc
Confidence 66788887654
No 274
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.36 E-value=9.2e-07 Score=90.55 Aligned_cols=202 Identities=15% Similarity=0.243 Sum_probs=129.3
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc--eeee-
Q 012367 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE--VFQI- 297 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~- 297 (465)
-.+++.++.++|.|+-+|.++.-| +.|-|+...-.......+......... ..........-+..+.+.+ +|.+
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~--qws~h~a~~~wiVsts~qkaiiwnlA 99 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADV--QWSPHPAKPYWIVSTSNQKAIIWNLA 99 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcce--ecccCCCCceeEEecCcchhhhhhhh
Confidence 356788999999999999999887 455566553332222222221110000 0000000000111111111 1222
Q ss_pred ---cCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCe-EeEEe-cCCCceEEEEEccCCCCEEEEEeC
Q 012367 298 ---EESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQ-CLNVF-DHHNYVTCVQFNPIDDNYFISGSI 370 (465)
Q Consensus 298 ---~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~-~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~ 370 (465)
.......+.||...|+++.|+|.. .+++++.|-.|..||+++.. ++..+ .-......|.|+-.+++.+|+. .
T Consensus 100 ~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass-h 178 (1081)
T KOG0309|consen 100 KSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS-H 178 (1081)
T ss_pred cCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc-c
Confidence 122344678999999999999864 89999999999999998764 34444 2444567889998777777764 4
Q ss_pred CCcEEEEeCCCCe--EEecccCCCCeEEEEEee-CCCEEEEEEcCCcEEEEEecCCcee
Q 012367 371 DGKVRIWGVCEKR--VVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLK 426 (465)
Q Consensus 371 Dg~I~iwd~~~~~--~~~~~~~~~~V~sv~~sp-dg~~l~sgs~dG~v~iwd~~~~~~~ 426 (465)
.+.|++||++.+. +....+|...|+.+.|.. -...+.+.+.||+|++||.+.....
T Consensus 179 g~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e 237 (1081)
T KOG0309|consen 179 GNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE 237 (1081)
T ss_pred CCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc
Confidence 6789999998654 334677888888888875 2346888999999999998765443
No 275
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.36 E-value=8.9e-07 Score=83.38 Aligned_cols=139 Identities=13% Similarity=0.248 Sum_probs=103.8
Q ss_pred cccceEEEEecC-CCEEEEEeCCCeEEEEeCCCC-----eEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCC
Q 012367 308 HKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCN-----QCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 381 (465)
Q Consensus 308 h~~~V~~l~~s~-~~~l~s~s~DgtV~lWD~~~~-----~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~ 381 (465)
..++|.++.|.. ++++..|...|.|-..|+++. .+...+-|...|++++.-..++.+|++.+.+|+|++||++.
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~ 330 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA 330 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence 567888888886 679999999999999999864 57788889999999988777889999999999999999985
Q ss_pred Ce----EEecccCCCCeEE--EEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEe
Q 012367 382 KR----VVDWADVRDVISA--ICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGR 449 (465)
Q Consensus 382 ~~----~~~~~~~~~~V~s--v~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~ 449 (465)
-+ +....+|-+.-.- +-..+....+++++.|.-.|||.++.+.+.- ++.+... .+...|.+++|.
T Consensus 331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~-tipf~~s--~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC-TIPFPYS--ASEVDIPSVAFD 401 (425)
T ss_pred hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceee-ccCCCCc--cccccccceehh
Confidence 43 3456666443322 2334566788889999999999999887733 3333221 122345555554
No 276
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.36 E-value=3.8e-06 Score=88.06 Aligned_cols=148 Identities=18% Similarity=0.300 Sum_probs=119.0
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcce
Q 012367 224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 303 (465)
Q Consensus 224 ~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (465)
.|+-|+. ++++|.+|..-|+|.+-|..+. +.++
T Consensus 179 ~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~---------------------------------------------~~ih 211 (1118)
T KOG1275|consen 179 GVTIMRY--NNRNLFCGDTRGTVFLRDPNSF---------------------------------------------ETIH 211 (1118)
T ss_pred ceEEEEe--cCcEEEeecccceEEeecCCcC---------------------------------------------ceee
Confidence 4666665 6789999999999999998763 4578
Q ss_pred eeeccccceEEEEecCCCEEEEEeC---------CCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcE
Q 012367 304 ELHGHKGDVLDLAWSNSNYLLSCSM---------DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKV 374 (465)
Q Consensus 304 ~~~gh~~~V~~l~~s~~~~l~s~s~---------DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I 374 (465)
++.+|++.|.++... ++.|++|+. |.-|+|||++..+.+.-++......-+.|+|.-...++.++..|..
T Consensus 212 t~~aHs~siSDfDv~-GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~ 290 (1118)
T KOG1275|consen 212 TFDAHSGSISDFDVQ-GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQF 290 (1118)
T ss_pred eeeccccceeeeecc-CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccce
Confidence 899999999998865 467888875 4568999999988887777555557788999777888999999999
Q ss_pred EEEeC---CCCe--EEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEE
Q 012367 375 RIWGV---CEKR--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYK 419 (465)
Q Consensus 375 ~iwd~---~~~~--~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd 419 (465)
.+-|. .+.. +.........+.+++++++|+.++.|..+|.|.+|-
T Consensus 291 q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 291 QFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 99993 3332 223444556699999999999999999999999997
No 277
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.36 E-value=4.2e-06 Score=85.53 Aligned_cols=205 Identities=16% Similarity=0.250 Sum_probs=137.8
Q ss_pred ccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCcee
Q 012367 208 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 287 (465)
Q Consensus 208 ~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (465)
..+.+.+.|+|.||++.|.-+.|+.+.+.|-|...+|.|.||-+-.+.-....
T Consensus 57 a~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEM--------------------------- 109 (1189)
T KOG2041|consen 57 AASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEM--------------------------- 109 (1189)
T ss_pred cccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHH---------------------------
Confidence 45678889999999999999999999999999999999999987653211000
Q ss_pred EecCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEE
Q 012367 288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI 366 (465)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~ 366 (465)
.-.-..+-|.+++|+.+| .+.....||.|.+=.+..++.-..--.......+.|++ |...++
T Consensus 110 ----------------iNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~-D~~~~L 172 (1189)
T KOG2041|consen 110 ----------------INNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSE-DLEQAL 172 (1189)
T ss_pred ----------------hhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecc-cHHHHH
Confidence 001234678899998765 78888888888877665443221111122345788999 888888
Q ss_pred EEeCCCcEEEEeCCCC--------eEEe----cccCCCCeEEEEEe--------eCCCEEEEEEcCCcEEEEEecCCcee
Q 012367 367 SGSIDGKVRIWGVCEK--------RVVD----WADVRDVISAICYI--------PDGKGFIVGSITGTCHFYKASGNDLK 426 (465)
Q Consensus 367 sgs~Dg~I~iwd~~~~--------~~~~----~~~~~~~V~sv~~s--------pdg~~l~sgs~dG~v~iwd~~~~~~~ 426 (465)
.+-..|.+.++|-... ..+. +......|..++|. ||...|+++-.+|.+.|-.-.+..-+
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P 252 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP 252 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence 8888999999997542 1222 22233446667764 47789999999999988765543332
Q ss_pred eeEeeecCcccccCCceeeEEEeecCCc---------------cceeeeecCC
Q 012367 427 LEKVDFHDRKKTSGNKITGIQGRISKNY---------------DNFRRFQTPY 464 (465)
Q Consensus 427 ~~~~~~~~~~~~~~~~It~~~f~p~gs~---------------d~~~~~~~p~ 464 (465)
.. ++ .+-+|+|.+|+++|.. .|...+.+||
T Consensus 253 vv-~d-------tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~ 297 (1189)
T KOG2041|consen 253 VV-VD-------TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY 297 (1189)
T ss_pred eE-Ee-------cccEeecceecCCCcEEEEccCcccccCccccceEEEeccc
Confidence 21 11 1245666666666543 3356677776
No 278
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=6.1e-07 Score=88.98 Aligned_cols=193 Identities=16% Similarity=0.251 Sum_probs=130.3
Q ss_pred CCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccc
Q 012367 190 EKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS 269 (465)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~ 269 (465)
+..+...+|.|.-+..-.+.....+..++++|+.+|..+.|-.+.++++++ ||.|++||.--+.......
T Consensus 752 SASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~-------- 821 (1034)
T KOG4190|consen 752 SASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQME-------- 821 (1034)
T ss_pred eccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhh--------
Confidence 345667778887766666666677888999999999999999998888765 7899999964322111000
Q ss_pred ccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCCCE-EEEEeCCCeEEEEeCCCCeEeEEec-
Q 012367 270 NAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNY-LLSCSMDKTVRMWQVGCNQCLNVFD- 347 (465)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~-l~s~s~DgtV~lWD~~~~~~l~~~~- 347 (465)
..+ -.+-.+.|.++.--.... ++-|+...||+++|.+...-...++
T Consensus 822 -----------------------------dap---k~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kV 869 (1034)
T KOG4190|consen 822 -----------------------------DAP---KEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKV 869 (1034)
T ss_pred -----------------------------cCc---ccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEe
Confidence 000 012223344443111223 4445788999999999876544442
Q ss_pred -----CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEE-EEe
Q 012367 348 -----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHF-YKA 420 (465)
Q Consensus 348 -----h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~i-wd~ 420 (465)
.+..+.|++..| .|++++.+-..|.|.+.|.++|+++. |.........++ .|..+.++....|.++-+ |..
T Consensus 870 cna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWha 947 (1034)
T KOG4190|consen 870 CNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHA 947 (1034)
T ss_pred ccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehh
Confidence 335689999999 99999999999999999999999876 665554444443 345556666666777777 765
Q ss_pred cCCcee
Q 012367 421 SGNDLK 426 (465)
Q Consensus 421 ~~~~~~ 426 (465)
.++...
T Consensus 948 ldgimh 953 (1034)
T KOG4190|consen 948 LDGIMH 953 (1034)
T ss_pred cCCeee
Confidence 554443
No 279
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.35 E-value=5e-05 Score=70.43 Aligned_cols=198 Identities=13% Similarity=0.107 Sum_probs=95.9
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCC-----CCceeEecCC---ceee
Q 012367 225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKK-----SSHVPVVIPD---EVFQ 296 (465)
Q Consensus 225 I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~---~~~~ 296 (465)
=+.++||||+.+||.+...|+|+++|+.....-..................+.+.... .....+.... ..+-
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~ 125 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL 125 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence 4579999999999999999999999998643322211111111111111111111111 0011111111 1111
Q ss_pred ec------CCcceeee--c-cccceEEEEecCC-CEEEEEeC-CCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCE
Q 012367 297 IE------ESPLQELH--G-HKGDVLDLAWSNS-NYLLSCSM-DKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNY 364 (465)
Q Consensus 297 ~~------~~~~~~~~--g-h~~~V~~l~~s~~-~~l~s~s~-DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~ 364 (465)
+. ....+.+. . +...|.++.++|. ++|+.|+. ...-..+... ..-+..++ -.+......+...+...
T Consensus 126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~-~~GLtaWRiL~~~Pyyk~v~~~~~~~ 204 (282)
T PF15492_consen 126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKAS-SCGLTAWRILSDSPYYKQVTSSEDDI 204 (282)
T ss_pred EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccccc-ccCceEEEEcCCCCcEEEccccCccc
Confidence 11 11122222 2 4678999999997 55555544 3221111100 00011111 01111111111101222
Q ss_pred EEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367 365 FISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK 426 (465)
Q Consensus 365 l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~ 426 (465)
-..... ..+|.+.+.+... .....+.|..++.+|||..|++...+|.|.+|++..-.++
T Consensus 205 ~~~~~~---~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 205 TASSKR---RGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred cccccc---cceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 212111 2333333333322 2335678999999999999999999999999999876554
No 280
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.31 E-value=8.6e-07 Score=98.51 Aligned_cols=151 Identities=18% Similarity=0.324 Sum_probs=95.5
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEec-cCCCCceeEecCCceeeecCCc
Q 012367 223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFG-KKKSSHVPVVIPDEVFQIEESP 301 (465)
Q Consensus 223 ~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 301 (465)
..|+.+.|+.+|+.+..+..||.+-+|.+..... ......+.........+.+... ........+..++.........
T Consensus 2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~-~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~ 2330 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPY-TSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSL 2330 (2439)
T ss_pred chhhhhhhcccCCceeeeccCCceeecccCCcce-eccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccce
Confidence 6677788999999999999999999999873111 1100011110000011111110 0111111111222222222223
Q ss_pred ceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCC
Q 012367 302 LQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 380 (465)
Q Consensus 302 ~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~ 380 (465)
++ ..|.+.++++++.|. ..|+||+.+|.|+|||++..+.++.++. +. ...+|++|+..|.|+||++.
T Consensus 2331 v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~--~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2331 VH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD--TREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred ee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------hh--hhheeeccCcccceEEEEcc
Confidence 33 689999999999996 5899999999999999998877766653 33 46799999999999999998
Q ss_pred CCeEEe
Q 012367 381 EKRVVD 386 (465)
Q Consensus 381 ~~~~~~ 386 (465)
.-..+.
T Consensus 2399 ~~~ll~ 2404 (2439)
T KOG1064|consen 2399 EFGLLH 2404 (2439)
T ss_pred ccchhh
Confidence 765554
No 281
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.24 E-value=0.0003 Score=69.24 Aligned_cols=194 Identities=10% Similarity=0.100 Sum_probs=127.2
Q ss_pred ECCCCCEEEEEeCCCcEEEEecCCceeeeeeec-CCC----CcccccCCCeEE-eccCCCCceeEecCCceeeecCCcc-
Q 012367 230 FSPDGRYLASGGEDGVVRIWHVTSVAASCKSFT-DDG----GFGSNAKEGKIK-FGKKKSSHVPVVIPDEVFQIEESPL- 302 (465)
Q Consensus 230 fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~-~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~- 302 (465)
.+.||+.++- +.-|-|.++|..+......-.. +.. ..........+. +....+.....+.-+..|....-.-
T Consensus 274 ~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~ 352 (668)
T COG4946 274 ANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGY 352 (668)
T ss_pred cCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCe
Confidence 4567775543 2346699999877543322111 100 000000011111 2222333344444444444422111
Q ss_pred eeeeccccceEEEEecCC-CEEEEEeCCC-eEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCC
Q 012367 303 QELHGHKGDVLDLAWSNS-NYLLSCSMDK-TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 380 (465)
Q Consensus 303 ~~~~gh~~~V~~l~~s~~-~~l~s~s~Dg-tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~ 380 (465)
..--+|.+.|.-..+..+ .-++.|..|| .+-|+|..++...+....-+.|.++..+| +|.+++.+.....|-+.|+.
T Consensus 353 ~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 353 SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDID 431 (668)
T ss_pred eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEec
Confidence 122367777877777643 3688888998 89999999998777777888999999999 99999999888889999999
Q ss_pred CCeEEecc-cCCCCeEEEEEeeCCCEEEEEEcCC----cEEEEEecCCce
Q 012367 381 EKRVVDWA-DVRDVISAICYIPDGKGFIVGSITG----TCHFYKASGNDL 425 (465)
Q Consensus 381 ~~~~~~~~-~~~~~V~sv~~spdg~~l~sgs~dG----~v~iwd~~~~~~ 425 (465)
++.+.... ...+.|+.+.|||+++++|-+--+| .|++||+.+++.
T Consensus 432 ngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 432 NGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred CCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 99876543 3557799999999999999876554 789999998766
No 282
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.24 E-value=8.1e-05 Score=73.16 Aligned_cols=144 Identities=12% Similarity=0.180 Sum_probs=109.9
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCC-cEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGEDG-VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 298 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~Dg-~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (465)
+|.+.|.-..+..++.-++.|..|| .+-|+|..++
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~-------------------------------------------- 392 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG-------------------------------------------- 392 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCc--------------------------------------------
Confidence 5666677777766666677777777 6777776653
Q ss_pred CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCC----
Q 012367 299 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG---- 372 (465)
Q Consensus 299 ~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg---- 372 (465)
.++.+.+.-+.|.+++.+++| +++.+.....+.+.|+.++.....- ...+-|+.+.|+| +++++|-+--+|
T Consensus 393 --e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq 469 (668)
T COG4946 393 --EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQ 469 (668)
T ss_pred --eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeee
Confidence 344555667889999999997 5667776778999999998764433 3556799999999 999999876665
Q ss_pred cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEE
Q 012367 373 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS 410 (465)
Q Consensus 373 ~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs 410 (465)
.|+++|+.++++.........=.+-+|.|||++|.--+
T Consensus 470 ~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 470 SIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred eEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 58999999999988766666667788999999876655
No 283
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.21 E-value=1.1e-05 Score=81.53 Aligned_cols=137 Identities=18% Similarity=0.298 Sum_probs=94.1
Q ss_pred ceEEEEecC--CCEEEE----EeCCCe----EEEEeCCCCeE----eEEecCCCceEEEEEccCCCCEEEEEeCCCcEEE
Q 012367 311 DVLDLAWSN--SNYLLS----CSMDKT----VRMWQVGCNQC----LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI 376 (465)
Q Consensus 311 ~V~~l~~s~--~~~l~s----~s~Dgt----V~lWD~~~~~~----l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~i 376 (465)
...++.|+- +..+.| .+.+|. -++|++..++. +..+.....|.|++++| +...++.|+.||.|.+
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIIL 285 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEE
Confidence 445666663 233333 334443 35666655432 23345888999999999 9999999999999999
Q ss_pred EeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee----------EeeecCcccccCCceeeE
Q 012367 377 WGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE----------KVDFHDRKKTSGNKITGI 446 (465)
Q Consensus 377 wd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~----------~~~~~~~~~~~~~~It~~ 446 (465)
||...+.. ......-.++.++|||+|..+++|+..|.+.+||+.-+.+... .+.+.. .......+..+
T Consensus 286 yD~~~~~t-~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~-yf~~~~~L~~i 363 (545)
T PF11768_consen 286 YDTTRGVT-LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLSK-YFRVSSSLVHI 363 (545)
T ss_pred EEcCCCee-eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceeeccccCCCccEEeeeh-hccCcchhhee
Confidence 99877633 3345556789999999999999999999999999874443322 222322 12234567777
Q ss_pred EEee
Q 012367 447 QGRI 450 (465)
Q Consensus 447 ~f~p 450 (465)
+|.+
T Consensus 364 qW~~ 367 (545)
T PF11768_consen 364 QWAP 367 (545)
T ss_pred Eecc
Confidence 7773
No 284
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.21 E-value=8.3e-05 Score=73.71 Aligned_cols=200 Identities=18% Similarity=0.226 Sum_probs=119.9
Q ss_pred CcEEEEEECCCCC--EEE-----EEeCCCcEEEEecCCceeeee--eecCCCCc-ccccCCCeEEecc-CCC-CceeEe-
Q 012367 223 GCIWTLKFSPDGR--YLA-----SGGEDGVVRIWHVTSVAASCK--SFTDDGGF-GSNAKEGKIKFGK-KKS-SHVPVV- 289 (465)
Q Consensus 223 ~~I~~l~fspdg~--~La-----Sgs~Dg~V~iWd~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~-~~~-~~~~~~- 289 (465)
..|....|+|.|+ .|| ..+.++.++||.+........ ++...... ........+.+.. +.. ..-...
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg 253 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG 253 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence 4577788888643 344 347788999999875433221 11111111 0111111111100 000 000001
Q ss_pred -cCCceeeecCCcceeeeccccceEEEEecCCC---EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEE
Q 012367 290 -IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYF 365 (465)
Q Consensus 290 -~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~---~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l 365 (465)
..-.++.+....+....+-.++|.+.+|.|.. -+++|.++.++.++|++.. +........=+.+.|+| .++++
T Consensus 254 esnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp-~~r~i 330 (561)
T COG5354 254 ESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSP-HERYI 330 (561)
T ss_pred cceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccC-cccEE
Confidence 11123334444444444668899999999853 3556789999999999876 44444444456788999 99999
Q ss_pred EEEeCC---CcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEc------CCcEEEEEecCCce
Q 012367 366 ISGSID---GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI------TGTCHFYKASGNDL 425 (465)
Q Consensus 366 ~sgs~D---g~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~------dG~v~iwd~~~~~~ 425 (465)
+.++.| |.|-+||......+.-.-.....+-+.|+|||+++.+... |..+.|||+.+.+.
T Consensus 331 l~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 331 LFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred EEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchh
Confidence 998876 6799999887655442222223455679999999888763 78899999987654
No 285
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.21 E-value=0.00024 Score=80.39 Aligned_cols=139 Identities=9% Similarity=0.082 Sum_probs=92.6
Q ss_pred eEEEEecC-CC-EEEEEeCCCeEEEEeCCCCeEeEEecC---------------CCceEEEEEccCCCC-EEEEEeCCCc
Q 012367 312 VLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFDH---------------HNYVTCVQFNPIDDN-YFISGSIDGK 373 (465)
Q Consensus 312 V~~l~~s~-~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h---------------~~~V~~i~fsp~~~~-~l~sgs~Dg~ 373 (465)
..+++++| ++ ++++.+.++.|++||..++........ -.....|+|+| ++. ++++-+.++.
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~ 763 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSS 763 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCe
Confidence 35789998 45 567778889999999987754322110 12356799999 766 6666677899
Q ss_pred EEEEeCCCCeEEeccc----------------------CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEee
Q 012367 374 VRIWGVCEKRVVDWAD----------------------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD 431 (465)
Q Consensus 374 I~iwd~~~~~~~~~~~----------------------~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~ 431 (465)
|++||+.++......+ .-.....++++|+|+.+++-+.+++|++||..++.... +.
T Consensus 764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t--ia 841 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT--LA 841 (1057)
T ss_pred EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE--Ee
Confidence 9999998765321110 01134689999999988888899999999998775532 21
Q ss_pred ecCc--------ccccCCceeeEEEeecCC
Q 012367 432 FHDR--------KKTSGNKITGIQGRISKN 453 (465)
Q Consensus 432 ~~~~--------~~~~~~~It~~~f~p~gs 453 (465)
..+. .........++.+.++|.
T Consensus 842 G~G~~G~~dG~~~~a~l~~P~GIavd~dG~ 871 (1057)
T PLN02919 842 GTGKAGFKDGKALKAQLSEPAGLALGENGR 871 (1057)
T ss_pred ccCCcCCCCCcccccccCCceEEEEeCCCC
Confidence 1111 011224567788877764
No 286
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.19 E-value=0.00014 Score=80.87 Aligned_cols=199 Identities=14% Similarity=0.220 Sum_probs=115.4
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEec-cCCCCceeEecCCce----e
Q 012367 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFG-KKKSSHVPVVIPDEV----F 295 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~ 295 (465)
-.+.|.|++||||+..||.+..+++|.+-.- +............... ....+.++ +.......... ++. .
T Consensus 119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~---~~~~VsVGWGkKeTQF~Gs~-gK~aa~~~ 193 (928)
T PF04762_consen 119 VDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFG---ESKHVSVGWGKKETQFHGSA-GKAAARQL 193 (928)
T ss_pred EcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccC---CCceeeeccCcccCccCcch-hhhhhhhc
Confidence 3567999999999999999999999887642 2222222111111000 00111111 00000000000 000 0
Q ss_pred eecCCc---ceeeeccccceEEEEecCCC-EEEEEeC---C---CeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCE
Q 012367 296 QIEESP---LQELHGHKGDVLDLAWSNSN-YLLSCSM---D---KTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNY 364 (465)
Q Consensus 296 ~~~~~~---~~~~~gh~~~V~~l~~s~~~-~l~s~s~---D---gtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~ 364 (465)
.-...+ ...+. +...-..|+|-.|| ++++.+. . ..+|||+-. |....+-. -.+--.+++|.| .|++
T Consensus 194 ~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~l 270 (928)
T PF04762_consen 194 RDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNL 270 (928)
T ss_pred cCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCE
Confidence 000000 11222 44456689999887 6665553 2 579999976 54433332 223345789999 9999
Q ss_pred EEEEeC---CCcEEEEeCCCCeEEe----cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367 365 FISGSI---DGKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 428 (465)
Q Consensus 365 l~sgs~---Dg~I~iwd~~~~~~~~----~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~ 428 (465)
||+.-. ...|.+|....-+--. +......|..++|++|+..|++...|. |.+|-..+...-++
T Consensus 271 IA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLK 340 (928)
T PF04762_consen 271 IASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLK 340 (928)
T ss_pred EEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEE
Confidence 998765 3467788765533222 334567899999999999999987665 99999988876554
No 287
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.18 E-value=0.00017 Score=66.24 Aligned_cols=140 Identities=14% Similarity=0.073 Sum_probs=100.4
Q ss_pred eEEEEecCCC-EEEEEeCCCeEEEEeCCCC--eEeEEe--cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEE-
Q 012367 312 VLDLAWSNSN-YLLSCSMDKTVRMWQVGCN--QCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV- 385 (465)
Q Consensus 312 V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~--~~l~~~--~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~- 385 (465)
+.+++++|++ ++++.+....|-.|.+... ..++.. ...+.-.+..|+. ....||++..||++.|||++.....
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm 239 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPM 239 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccch
Confidence 7788999986 6777777888999988643 233322 3445557888998 8889999999999999999864322
Q ss_pred -----ecccCCCCeEEEEEeeCCC--EEEEEEcCCcEEEEEecCCceeeeEeeecCcccccC-CceeeEEEeecC
Q 012367 386 -----DWADVRDVISAICYIPDGK--GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG-NKITGIQGRISK 452 (465)
Q Consensus 386 -----~~~~~~~~V~sv~~spdg~--~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~It~~~f~p~g 452 (465)
....|.+.+..+.|+|.|. .|+..-.-+.+++-|+++..-.........+..++. ..|+|-.|+-.+
T Consensus 240 ~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n 314 (344)
T KOG4532|consen 240 AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNEN 314 (344)
T ss_pred hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCC
Confidence 1345889999999998664 455555678999999998876555444444444444 448888777554
No 288
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=0.00019 Score=72.02 Aligned_cols=132 Identities=19% Similarity=0.312 Sum_probs=95.1
Q ss_pred ceEEEEecCCC--EE--EEEeCCC---------eEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEE--EeCCCcEE
Q 012367 311 DVLDLAWSNSN--YL--LSCSMDK---------TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS--GSIDGKVR 375 (465)
Q Consensus 311 ~V~~l~~s~~~--~l--~s~s~Dg---------tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~s--gs~Dg~I~ 375 (465)
+=..+.|++.+ +| ++...|+ ++++.++....+.-.+...++|.+++|+| +++-|++ |-.-.++.
T Consensus 219 dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~-s~~EF~VvyGfMPAkvt 297 (566)
T KOG2315|consen 219 DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSP-SGREFAVVYGFMPAKVT 297 (566)
T ss_pred ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECC-CCCEEEEEEecccceEE
Confidence 33467888754 33 3444454 68888888667777778899999999999 7765544 44567899
Q ss_pred EEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEc---CCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC
Q 012367 376 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI---TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK 452 (465)
Q Consensus 376 iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~---dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g 452 (465)
|||++...+..+. .++=+++-|+|.|++|+.++- .|.+-|||+.+.++ +..+.. ..-|=+.|+|+|
T Consensus 298 ifnlr~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~-i~~~~a--------~~tt~~eW~PdG 366 (566)
T KOG2315|consen 298 IFNLRGKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKL-IAKFKA--------ANTTVFEWSPDG 366 (566)
T ss_pred EEcCCCCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhh-cccccc--------CCceEEEEcCCC
Confidence 9999887665543 345578899999999988875 58999999988443 222221 335667899999
Q ss_pred Cc
Q 012367 453 NY 454 (465)
Q Consensus 453 s~ 454 (465)
.|
T Consensus 367 e~ 368 (566)
T KOG2315|consen 367 EY 368 (566)
T ss_pred cE
Confidence 87
No 289
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.16 E-value=1.1e-05 Score=73.55 Aligned_cols=92 Identities=16% Similarity=0.180 Sum_probs=71.4
Q ss_pred EEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEE--ecccCCCCeEEEEEee-CCCEEE
Q 012367 332 VRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV--DWADVRDVISAICYIP-DGKGFI 407 (465)
Q Consensus 332 V~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~--~~~~~~~~V~sv~~sp-dg~~l~ 407 (465)
.+.|+++..+.+..- .....|++++-+|...+.+++|+.||.+-+||.+..... .+..|+..|+.+-|+| ++..|+
T Consensus 161 ~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lf 240 (319)
T KOG4714|consen 161 FYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLF 240 (319)
T ss_pred eeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhee
Confidence 455555433322221 233459999999988888999999999999999886433 2778999999999999 678999
Q ss_pred EEEcCCcEEEEEecCC
Q 012367 408 VGSITGTCHFYKASGN 423 (465)
Q Consensus 408 sgs~dG~v~iwd~~~~ 423 (465)
+++.||.+--||.++.
T Consensus 241 t~sedGslw~wdas~~ 256 (319)
T KOG4714|consen 241 TCSEDGSLWHWDASTT 256 (319)
T ss_pred EecCCCcEEEEcCCCc
Confidence 9999999999998863
No 290
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.15 E-value=5.3e-06 Score=78.28 Aligned_cols=138 Identities=15% Similarity=0.266 Sum_probs=98.4
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (465)
.++.|.++.|...++++..|...|.|.+.|+.....- ...
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG----------------------------------------~~~ 290 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQG----------------------------------------NGW 290 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccC----------------------------------------CCc
Confidence 4566888888888888888888888888888753110 011
Q ss_pred cceeeeccccceEEEEecC--CCEEEEEeCCCeEEEEeCCCCeE---eEEe-cCCCce--EEEEEccCCCCEEEEEeCCC
Q 012367 301 PLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQC---LNVF-DHHNYV--TCVQFNPIDDNYFISGSIDG 372 (465)
Q Consensus 301 ~~~~~~gh~~~V~~l~~s~--~~~l~s~s~DgtV~lWD~~~~~~---l~~~-~h~~~V--~~i~fsp~~~~~l~sgs~Dg 372 (465)
+.+.+ -|...|+++..-. +.+|++++++|+|++||++--++ +..+ +|-+.- .-+..++ ....+++++.|-
T Consensus 291 ~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDc 368 (425)
T KOG2695|consen 291 CAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDC 368 (425)
T ss_pred ceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccc-ccceEEEccCee
Confidence 22222 4888999988764 46899999999999999987777 6666 454322 2233455 677888899999
Q ss_pred cEEEEeCCCCeEEecccCCC-----CeEEEEEe
Q 012367 373 KVRIWGVCEKRVVDWADVRD-----VISAICYI 400 (465)
Q Consensus 373 ~I~iwd~~~~~~~~~~~~~~-----~V~sv~~s 400 (465)
..|||.+..+.++....... .+.+++|.
T Consensus 369 ytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 369 YTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred EEEEEecccCceeeccCCCCccccccccceehh
Confidence 99999999999887555443 34555554
No 291
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.00014 Score=75.82 Aligned_cols=150 Identities=13% Similarity=0.237 Sum_probs=101.2
Q ss_pred ccCCCcEEEEEECCC-------------CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCc
Q 012367 219 QAHKGCIWTLKFSPD-------------GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH 285 (465)
Q Consensus 219 ~~H~~~I~~l~fspd-------------g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (465)
..|.|.|.-..+.-+ |.|+||||.||+|.|-.+-+.+..
T Consensus 55 GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~---------------------------- 106 (846)
T KOG2066|consen 55 GTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEI---------------------------- 106 (846)
T ss_pred ccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccc----------------------------
Confidence 456666655555444 889999999999988776653221
Q ss_pred eeEecCCceeeecCCcceeeeccccceEEEEecCC------CEEEEEeCCCeEEEEeCC---CCeEeEEecCCCceEEEE
Q 012367 286 VPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS------NYLLSCSMDKTVRMWQVG---CNQCLNVFDHHNYVTCVQ 356 (465)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~------~~l~s~s~DgtV~lWD~~---~~~~l~~~~h~~~V~~i~ 356 (465)
+.+ ....++.+++++|+ +.+++|+.-| +.++.-+ ....+..-...++|.++.
T Consensus 107 -----------------~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~ 167 (846)
T KOG2066|consen 107 -----------------TQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIK 167 (846)
T ss_pred -----------------eeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEE
Confidence 111 23467888999886 4899999998 7777532 122221224677999999
Q ss_pred EccCCCCEEEEEeCCCcEEEEeCCCCeEEecccC-CC------CeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367 357 FNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV-RD------VISAICYIPDGKGFIVGSITGTCHFYKAS 421 (465)
Q Consensus 357 fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~-~~------~V~sv~~spdg~~l~sgs~dG~v~iwd~~ 421 (465)
| .|+++|-++.+| |+|||+.+++.+..... .. ....+.|.++. .|+.| ..-+|+|..++
T Consensus 168 W---~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 168 W---RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIG-WGDSVKICSIK 233 (846)
T ss_pred e---cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEe-cCCeEEEEEEe
Confidence 9 689999998766 89999999887763321 12 23457787665 44554 45578888887
No 292
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.15 E-value=8.2e-05 Score=77.11 Aligned_cols=196 Identities=15% Similarity=0.224 Sum_probs=138.5
Q ss_pred cccccchhhhccCCCcEEEEEECCCC------------CEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeE
Q 012367 209 FTALYTSQEIQAHKGCIWTLKFSPDG------------RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKI 276 (465)
Q Consensus 209 ~~~~~~~~~l~~H~~~I~~l~fspdg------------~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (465)
-..++..|.+.-|...|+.+.|.|-. -.||++...|.|.+||+.....
T Consensus 42 s~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~-------------------- 101 (1062)
T KOG1912|consen 42 SRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASV-------------------- 101 (1062)
T ss_pred hhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhh--------------------
Confidence 34567788899999999999998721 2688888899999999876422
Q ss_pred EeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCC-----CEEEEEeCCCeEEEEeCCCCeEeEEec-CCC
Q 012367 277 KFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS-----NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHN 350 (465)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~-----~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~ 350 (465)
+..+..|..+|.+++|-+. ..|++-....+|.+|+..+|+...... .+.
T Consensus 102 -------------------------~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~ 156 (1062)
T KOG1912|consen 102 -------------------------INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE 156 (1062)
T ss_pred -------------------------hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc
Confidence 3445568888999999752 367777778899999999999988886 445
Q ss_pred ceEEEEEccCCCCEEEEEeCCCcEEEEeCCC-------CeEEe-cccCCC------------C-------------eEEE
Q 012367 351 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-------KRVVD-WADVRD------------V-------------ISAI 397 (465)
Q Consensus 351 ~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~-------~~~~~-~~~~~~------------~-------------V~sv 397 (465)
...|+.+.|.+.+.|..-+..|.|-+-+... ++... ...|.+ . .-.+
T Consensus 157 iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~f 236 (1062)
T KOG1912|consen 157 ILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQF 236 (1062)
T ss_pred ceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhh
Confidence 6778999999999888888889888877632 22222 222222 0 1125
Q ss_pred EEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCccc
Q 012367 398 CYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNYDN 456 (465)
Q Consensus 398 ~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~d~ 456 (465)
+|+|.-+.++.......+.++|+.-..-. ..+.+.. +...-+++.|+++.|.
T Consensus 237 af~p~~rn~lfi~~prellv~dle~~~~l-~vvpier------~~akfv~vlP~~~rd~ 288 (1062)
T KOG1912|consen 237 AFSPHWRNILFITFPRELLVFDLEYECCL-AVVPIER------GGAKFVDVLPDPRRDA 288 (1062)
T ss_pred hcChhhhceEEEEeccceEEEcchhhcee-EEEEecc------CCcceeEeccCCCcce
Confidence 78998888888888889999998754332 2222222 2334456667766655
No 293
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=4.1e-05 Score=74.72 Aligned_cols=224 Identities=18% Similarity=0.145 Sum_probs=141.5
Q ss_pred cchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeC-CCcEEEEecCCceeeeeeecCCCC--ccc
Q 012367 193 KANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGG--FGS 269 (465)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~-Dg~V~iWd~~~~~~~~~~~~~~~~--~~~ 269 (465)
-++..|.|.++. .....-...+.+|.+.|.+++.+.+|.+++|++. |..++++|+.+...........-+ ...
T Consensus 28 lDGh~KFWkKs~----isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~w 103 (558)
T KOG0882|consen 28 LDGHKKFWKKSR----ISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEW 103 (558)
T ss_pred cchhhhhcCCCC----ccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEE
Confidence 344555553322 2233345667899999999999999999999888 999999999875544222111111 111
Q ss_pred ccCCC----eEEeccCCCCceeEecCCceeeecCCcc-eeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCC----
Q 012367 270 NAKEG----KIKFGKKKSSHVPVVIPDEVFQIEESPL-QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC---- 339 (465)
Q Consensus 270 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~---- 339 (465)
....+ .+.+.........+..... ...+. ..-.-|..+|.++.+++.+ ..+|....|.|.-|....
T Consensus 104 v~skGd~~s~IAVs~~~sg~i~VvD~~~----d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qf 179 (558)
T KOG0882|consen 104 VTSKGDKISLIAVSLFKSGKIFVVDGFG----DFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQF 179 (558)
T ss_pred ecCCCCeeeeEEeecccCCCcEEECCcC----CcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccC
Confidence 11111 1222211122121111111 11122 2333499999999999864 677888889999998862
Q ss_pred --CeEeEEe----------cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEeccc------------------
Q 012367 340 --NQCLNVF----------DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD------------------ 389 (465)
Q Consensus 340 --~~~l~~~----------~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~------------------ 389 (465)
......+ .......++.|+| ++..+.+-+.|.+||++++.+++++....
T Consensus 180 Pr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~ 258 (558)
T KOG0882|consen 180 PRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMH 258 (558)
T ss_pred ccccccccccccchhhcccccccCccceEEcc-ccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccce
Confidence 1111112 2455788999999 99999999999999999999887542110
Q ss_pred ---------------CC-CCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367 390 ---------------VR-DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK 426 (465)
Q Consensus 390 ---------------~~-~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~ 426 (465)
|. ..-+.++|...|++|+-|+.=| |++.++.++...
T Consensus 259 VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ 310 (558)
T KOG0882|consen 259 VELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVV 310 (558)
T ss_pred eehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEE
Confidence 11 1245678899999999988776 678888877653
No 294
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.11 E-value=0.00033 Score=69.58 Aligned_cols=97 Identities=9% Similarity=0.133 Sum_probs=64.4
Q ss_pred eEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEE--eCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEE
Q 012367 331 TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG--SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIV 408 (465)
Q Consensus 331 tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sg--s~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~s 408 (465)
.+.|+++....+.-.....++|...+|.| .++-|++. -.+..+-++|++.. +.+......=+.+.|+|.++++++
T Consensus 256 nLyl~~~~e~~i~V~~~~~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~ 332 (561)
T COG5354 256 NLYLLRITERSIPVEKDLKDPVHDFTWEP-LSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILF 332 (561)
T ss_pred eEEEEeecccccceeccccccceeeeecc-cCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEE
Confidence 34555554332222224577899999999 55544443 46889999999987 344444445566789999999888
Q ss_pred EEc---CCcEEEEEecCCceeeeEe
Q 012367 409 GSI---TGTCHFYKASGNDLKLEKV 430 (465)
Q Consensus 409 gs~---dG~v~iwd~~~~~~~~~~~ 430 (465)
++- .|.+-+||..+..+....+
T Consensus 333 agF~nl~gni~i~~~~~rf~~~~~~ 357 (561)
T COG5354 333 AGFDNLQGNIEIFDPAGRFKVAGAF 357 (561)
T ss_pred ecCCccccceEEeccCCceEEEEEe
Confidence 765 4788999988765544333
No 295
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.09 E-value=2.2e-06 Score=89.45 Aligned_cols=199 Identities=17% Similarity=0.250 Sum_probs=124.0
Q ss_pred cccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccc--cCCCeEEeccCCCC
Q 012367 207 MEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN--AKEGKIKFGKKKSS 284 (465)
Q Consensus 207 ~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 284 (465)
.-|+.+.....++.|+...+|++|+-+.++|+.|+..|.|+++++.++........+...+... ...+...+.....+
T Consensus 1086 ~IFSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1086 FIFSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSS 1165 (1516)
T ss_pred hhHhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeecccc
Confidence 3467777888999999999999999999999999999999999998875543332222211110 01111111000000
Q ss_pred ceeEecCC-ceeee--cCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEe-c----CCCceEEE
Q 012367 285 HVPVVIPD-EVFQI--EESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF-D----HHNYVTCV 355 (465)
Q Consensus 285 ~~~~~~~~-~~~~~--~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~-~----h~~~V~~i 355 (465)
.|. .+|.. ...+.+.+.+ -.++.|++. ..-+.|.....+.|||+.++..+.++ . .+..-+++
T Consensus 1166 -----~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a 1236 (1516)
T KOG1832|consen 1166 -----SPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLA 1236 (1516)
T ss_pred -----CchHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccc
Confidence 000 12222 1234444432 356788764 23333444467899999999877663 2 22234788
Q ss_pred EEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 356 QFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 356 ~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
.|+| +..+++ .|| .+||++..+.+.....-..--.-.|+|.|..++.-+ -|||+++-++
T Consensus 1237 ~FsP-~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF~l 1295 (1516)
T KOG1832|consen 1237 HFSP-CDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTFKL 1295 (1516)
T ss_pred ccCC-CcceEe---eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhHHHHH
Confidence 9999 777766 355 689999877665333323334456999999998876 4899887655
No 296
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=3.4e-05 Score=80.24 Aligned_cols=148 Identities=18% Similarity=0.273 Sum_probs=112.2
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (465)
....|+|++++ +++||-|..+|.|++.+....
T Consensus 38 ~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~---------------------------------------------- 69 (846)
T KOG2066|consen 38 QNDAISCCAVH--DKFFALGTHRGAVYLTTCQGN---------------------------------------------- 69 (846)
T ss_pred hhhHHHHHHhh--cceeeeccccceEEEEecCCc----------------------------------------------
Confidence 35678899986 669999999999999987642
Q ss_pred cceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccC----CCCEEEEEeCCCcEEE
Q 012367 301 PLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI----DDNYFISGSIDGKVRI 376 (465)
Q Consensus 301 ~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~----~~~~l~sgs~Dg~I~i 376 (465)
+ .....|... -..+.+++|||.||+|.|-.+-+.+....+....++.+|+++|. ..+.+++|+.-| +.+
T Consensus 70 ~-~~~~~~s~~-----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL 142 (846)
T KOG2066|consen 70 P-KTNFDHSSS-----ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVL 142 (846)
T ss_pred c-ccccccccc-----ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEE
Confidence 1 111123222 11234999999999999999999999898988899999999992 256789999888 888
Q ss_pred EeCC---CCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367 377 WGVC---EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK 426 (465)
Q Consensus 377 wd~~---~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~ 426 (465)
+.-+ ....+......+.|.+++|. |.++|=++.+| |++||+...+..
T Consensus 143 ~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l 192 (846)
T KOG2066|consen 143 SERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRL 192 (846)
T ss_pred ehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEecccccee
Confidence 7653 22333466778899999997 66888888777 699999876553
No 297
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.04 E-value=0.0016 Score=61.30 Aligned_cols=148 Identities=18% Similarity=0.188 Sum_probs=101.4
Q ss_pred EEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceee
Q 012367 227 TLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQEL 305 (465)
Q Consensus 227 ~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (465)
++.|.+ ++.++++--..+.|..|+..+..... +
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~----------------------------------------------~ 37 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV----------------------------------------------I 37 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE----------------------------------------------E
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE----------------------------------------------E
Confidence 567887 67777777778889999887643211 1
Q ss_pred eccccceEEEEec-CCCEEEEEeCCCeEEEEeCCCCeEeEEec------CCCceEEEEEccCCCCEEEEEeCC-------
Q 012367 306 HGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFD------HHNYVTCVQFNPIDDNYFISGSID------- 371 (465)
Q Consensus 306 ~gh~~~V~~l~~s-~~~~l~s~s~DgtV~lWD~~~~~~l~~~~------h~~~V~~i~fsp~~~~~l~sgs~D------- 371 (465)
... . ...+++. +++.|+.+..++. .++|..+++...... .....+.+++.| ++++.++....
T Consensus 38 ~~~-~-~~G~~~~~~~g~l~v~~~~~~-~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~ 113 (246)
T PF08450_consen 38 DLP-G-PNGMAFDRPDGRLYVADSGGI-AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGID 113 (246)
T ss_dssp ESS-S-EEEEEEECTTSEEEEEETTCE-EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGG
T ss_pred ecC-C-CceEEEEccCCEEEEEEcCce-EEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCcccccc
Confidence 111 1 5667777 6787877777554 555999886544442 234688999999 99988887654
Q ss_pred -CcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEE-EEEcCCcEEEEEecCCce
Q 012367 372 -GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI-VGSITGTCHFYKASGNDL 425 (465)
Q Consensus 372 -g~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~-sgs~dG~v~iwd~~~~~~ 425 (465)
|.|..++.. +++......-...+.++|+|+++.|+ +-+..+.|..|++.....
T Consensus 114 ~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~ 168 (246)
T PF08450_consen 114 PGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGG 168 (246)
T ss_dssp SEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTC
T ss_pred ccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEecccccc
Confidence 557777777 56555555556789999999999776 455688899999975443
No 298
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.96 E-value=0.00074 Score=68.84 Aligned_cols=106 Identities=9% Similarity=0.050 Sum_probs=68.6
Q ss_pred EEEecCCC-EEE-EEeCCC--eEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCC---------CcEEEEeCC
Q 012367 314 DLAWSNSN-YLL-SCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---------GKVRIWGVC 380 (465)
Q Consensus 314 ~l~~s~~~-~l~-s~s~Dg--tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~D---------g~I~iwd~~ 380 (465)
...|+|++ .|+ +....+ .|.+.|+.++...+....... ...|+| ++++++..+.. ..|.+.|+.
T Consensus 281 ~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SP-DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~ 357 (419)
T PRK04043 281 NGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVST-YKNYIVYSSRETNNEFGKNTFNLYLISTN 357 (419)
T ss_pred ccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECC-CCCEEEEEEcCCCcccCCCCcEEEEEECC
Confidence 44799986 444 333333 688888888776444332222 248999 88888776654 268888988
Q ss_pred CCeEEecccCCCCeEEEEEeeCCCEEEEEEcC-Cc--EEEEEecCC
Q 012367 381 EKRVVDWADVRDVISAICYIPDGKGFIVGSIT-GT--CHFYKASGN 423 (465)
Q Consensus 381 ~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~d-G~--v~iwd~~~~ 423 (465)
++....+.... ......|+|||+.|+..+.. |. +.+.++.+.
T Consensus 358 ~g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 358 SDYIRRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CCCeEECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 88766655432 33468899999988776653 33 555666554
No 299
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.00013 Score=70.44 Aligned_cols=54 Identities=19% Similarity=0.229 Sum_probs=43.9
Q ss_pred cccccccccchhhhccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeee
Q 012367 205 KCMEFTALYTSQEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASC 258 (465)
Q Consensus 205 ~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~ 258 (465)
+.++-..++..+.+.+|...|..|+|||..+ +|..++.+.+|+|.|+.+..+..
T Consensus 176 ~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs 230 (463)
T KOG1645|consen 176 QKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS 230 (463)
T ss_pred EEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeee
Confidence 3444455666778889999999999999877 89999999999999999865443
No 300
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.94 E-value=0.0037 Score=59.92 Aligned_cols=190 Identities=12% Similarity=0.160 Sum_probs=115.6
Q ss_pred EEEEECCCCCEEEEEeC-CCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCccee
Q 012367 226 WTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 304 (465)
Q Consensus 226 ~~l~fspdg~~LaSgs~-Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (465)
.-++++++|++|+++.. -|.|.++-+........... .+......+-
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~------------------------------~~~h~g~~p~-- 139 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQ------------------------------VVKHTGSGPH-- 139 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCcccccee------------------------------eeecCCCCCC--
Confidence 78999999999998864 57888888765211100000 0000000000
Q ss_pred eeccccceEEEEecCCC-EEEEEeC-CCeEEEEeCCCCeEeEE----ecCCCceEEEEEccCCCCEEEEEe-CCCcEEEE
Q 012367 305 LHGHKGDVLDLAWSNSN-YLLSCSM-DKTVRMWQVGCNQCLNV----FDHHNYVTCVQFNPIDDNYFISGS-IDGKVRIW 377 (465)
Q Consensus 305 ~~gh~~~V~~l~~s~~~-~l~s~s~-DgtV~lWD~~~~~~l~~----~~h~~~V~~i~fsp~~~~~l~sgs-~Dg~I~iw 377 (465)
.+.-...+....+.|++ +|+++.- --.|.+|++..|..... +........|.|+| ++++..... .+++|-+|
T Consensus 140 ~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~ 218 (346)
T COG2706 140 ERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVL 218 (346)
T ss_pred ccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEE
Confidence 00011125567788987 6655543 24699999987764332 23556778999999 999877665 48999999
Q ss_pred eCCC--CeEEec---------ccCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCC--ceeee-EeeecCcccccCCc
Q 012367 378 GVCE--KRVVDW---------ADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGN--DLKLE-KVDFHDRKKTSGNK 442 (465)
Q Consensus 378 d~~~--~~~~~~---------~~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~--~~~~~-~~~~~~~~~~~~~~ 442 (465)
.... +++-.+ .....+..+|..+|||++|.++.. ...|-+|.+... ++.+. ....++ ..
T Consensus 219 ~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg------~~ 292 (346)
T COG2706 219 EYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEG------QF 292 (346)
T ss_pred EEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCC------cC
Confidence 9876 433222 123456788999999999999875 347888887644 44444 222233 22
Q ss_pred eeeEEEeecCCc
Q 012367 443 ITGIQGRISKNY 454 (465)
Q Consensus 443 It~~~f~p~gs~ 454 (465)
-.++.|.++|.+
T Consensus 293 PR~F~i~~~g~~ 304 (346)
T COG2706 293 PRDFNINPSGRF 304 (346)
T ss_pred CccceeCCCCCE
Confidence 345566666544
No 301
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=8.4e-05 Score=74.34 Aligned_cols=138 Identities=18% Similarity=0.265 Sum_probs=97.1
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCC-----------CcEEEEeCCC
Q 012367 313 LDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID-----------GKVRIWGVCE 381 (465)
Q Consensus 313 ~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~D-----------g~I~iwd~~~ 381 (465)
+-+.|||-|..++.-.-.-|.+|--.+-..++.|.|.+ |.-+.|+| +.+||+|-+.. ..++|||+++
T Consensus 214 tyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp~-Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t 291 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHPG-VQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT 291 (698)
T ss_pred eeEEecCCceEEEEEeccceeeecCccHHHHHhccCCC-ceeeecCC-ccceEEEecCCccccCcccCCCceEEEEEccc
Confidence 46789998844444445569999887777777887764 78899999 99999998642 5689999999
Q ss_pred CeEEecccC---C-CCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCccce
Q 012367 382 KRVVDWADV---R-DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNYDNF 457 (465)
Q Consensus 382 ~~~~~~~~~---~-~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~d~~ 457 (465)
|.+...... . ..-.-+.||.|++++|.-+.+ .|.||+...-.+ -.++.-....|.++.|+|. +++
T Consensus 292 G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~l-------ld~Kslki~gIr~FswsP~---~~l 360 (698)
T KOG2314|consen 292 GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFML-------LDKKSLKISGIRDFSWSPT---SNL 360 (698)
T ss_pred cchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceee-------ecccccCCccccCcccCCC---cce
Confidence 987652221 1 222347899999999988774 688998765222 1222223456888899998 455
Q ss_pred eeeecC
Q 012367 458 RRFQTP 463 (465)
Q Consensus 458 ~~~~~p 463 (465)
.-+++|
T Consensus 361 lAYwtp 366 (698)
T KOG2314|consen 361 LAYWTP 366 (698)
T ss_pred EEEEcc
Confidence 555554
No 302
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.88 E-value=0.00024 Score=73.79 Aligned_cols=150 Identities=16% Similarity=0.259 Sum_probs=114.8
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCccee
Q 012367 225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 304 (465)
Q Consensus 225 I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (465)
-.++.|+|.| ++|-|+.. .|.+-|..+. +.++.
T Consensus 18 ~~A~Dw~~~G-LiAygshs-lV~VVDs~s~---------------------------------------------q~iqs 50 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSHS-LVSVVDSRSL---------------------------------------------QLIQS 50 (1062)
T ss_pred ccccccCccc-eEEEecCc-eEEEEehhhh---------------------------------------------hhhhc
Confidence 6788999988 77777763 5666666542 34666
Q ss_pred eeccccceEEEEecCCC-------------EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccC--CC-CEEEE
Q 012367 305 LHGHKGDVLDLAWSNSN-------------YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPI--DD-NYFIS 367 (465)
Q Consensus 305 ~~gh~~~V~~l~~s~~~-------------~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~--~~-~~l~s 367 (465)
+.-|...|+.+.|.|-+ .|+++...|.|.+||...+..+..+. |.++|..++|-|. +. .+++.
T Consensus 51 ie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~Lla 130 (1062)
T KOG1912|consen 51 IELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLA 130 (1062)
T ss_pred cccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEE
Confidence 77788999999997521 46677778999999999988888885 5668999998763 23 56777
Q ss_pred EeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEee-CCCEEEEEEcCCcEEEEEec
Q 012367 368 GSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIP-DGKGFIVGSITGTCHFYKAS 421 (465)
Q Consensus 368 gs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~sp-dg~~l~sgs~dG~v~iwd~~ 421 (465)
-....+|.+|+..+|+... ....+....++.+.| |.+.++.-+..|.+.+-+..
T Consensus 131 Ih~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l 186 (1062)
T KOG1912|consen 131 IHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDL 186 (1062)
T ss_pred ecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEecc
Confidence 7778899999999988775 444556677799999 77888888888988877764
No 303
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=8.5e-05 Score=72.60 Aligned_cols=190 Identities=16% Similarity=0.201 Sum_probs=128.4
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (465)
-|.+.|+.+.-+ -.+++.+|+.||.++.|.-..... .
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isG------------------------------------------v 43 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISG------------------------------------------V 43 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccc------------------------------------------e
Confidence 488888887655 355999999999999997543110 0
Q ss_pred CcceeeeccccceEEEEecCCCE-EEEEeC-CCeEEEEeCCCCeEeEEecCCCceEEEEE--ccCCC--CEEEEEeCCCc
Q 012367 300 SPLQELHGHKGDVLDLAWSNSNY-LLSCSM-DKTVRMWQVGCNQCLNVFDHHNYVTCVQF--NPIDD--NYFISGSIDGK 373 (465)
Q Consensus 300 ~~~~~~~gh~~~V~~l~~s~~~~-l~s~s~-DgtV~lWD~~~~~~l~~~~h~~~V~~i~f--sp~~~--~~l~sgs~Dg~ 373 (465)
.-+..+..|.+.|.+++.+-++. +.|.+. |+.++++|+.+-..+..+......-.+.| +|.+. .+.++.-.++.
T Consensus 44 EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~ 123 (558)
T KOG0882|consen 44 EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGK 123 (558)
T ss_pred eehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCC
Confidence 23556778999999999998874 556566 99999999987665544432222222222 33111 23333445789
Q ss_pred EEEEeCCCCe--EEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee---------ee-EeeecCcccccC
Q 012367 374 VRIWGVCEKR--VVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK---------LE-KVDFHDRKKTSG 440 (465)
Q Consensus 374 I~iwd~~~~~--~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~---------~~-~~~~~~~~~~~~ 440 (465)
|.|+|-...- ... ..-|..+|..+.+.|-+..+++....|.|..|.... .++ +. +-++.+ ..++-
T Consensus 124 i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~-~~qfPr~~l~~~~K~eTdLy~-f~K~K 201 (558)
T KOG0882|consen 124 IFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG-PFQFPRTNLNFELKHETDLYG-FPKAK 201 (558)
T ss_pred cEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCC-cccCccccccccccccchhhc-ccccc
Confidence 9999986532 222 445889999999999999999999999999999884 111 11 122222 22244
Q ss_pred CceeeEEEeecCCc
Q 012367 441 NKITGIQGRISKNY 454 (465)
Q Consensus 441 ~~It~~~f~p~gs~ 454 (465)
...+++.|+|+|..
T Consensus 202 t~pts~Efsp~g~q 215 (558)
T KOG0882|consen 202 TEPTSFEFSPDGAQ 215 (558)
T ss_pred cCccceEEccccCc
Confidence 67889999998755
No 304
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.0012 Score=69.57 Aligned_cols=162 Identities=21% Similarity=0.284 Sum_probs=110.9
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcce
Q 012367 224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 303 (465)
Q Consensus 224 ~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (465)
.|+| |++.+..+|.|+.||.|.+.+-.- +.++
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s~----------------------------------------------~~~~ 58 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSSF----------------------------------------------QLIR 58 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecccc----------------------------------------------eeee
Confidence 4544 577888999999999887776331 2235
Q ss_pred eeeccccc-eEEEEecCC-CEEEEEeCCCe-----EEEEeCCC------CeEe---EEecC-----CCceEEEEEccCCC
Q 012367 304 ELHGHKGD-VLDLAWSNS-NYLLSCSMDKT-----VRMWQVGC------NQCL---NVFDH-----HNYVTCVQFNPIDD 362 (465)
Q Consensus 304 ~~~gh~~~-V~~l~~s~~-~~l~s~s~Dgt-----V~lWD~~~------~~~l---~~~~h-----~~~V~~i~fsp~~~ 362 (465)
.++.+... |..+...++ ++|++.+.|+. |++|++.. .+|+ +.+.+ ..++.+++.+. +-
T Consensus 59 ~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l 137 (933)
T KOG2114|consen 59 GFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DL 137 (933)
T ss_pred hheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cc
Confidence 56666666 444443344 58888888754 99999853 3455 44442 44688999998 88
Q ss_pred CEEEEEeCCCcEEEEeCC-----CCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecC
Q 012367 363 NYFISGSIDGKVRIWGVC-----EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD 434 (465)
Q Consensus 363 ~~l~sgs~Dg~I~iwd~~-----~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~ 434 (465)
..+|.|-.+|.|..+.-. ..+........++|+.+++..+++.++-......|.+|.+.+.......++.+|
T Consensus 138 ~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G 214 (933)
T KOG2114|consen 138 KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNG 214 (933)
T ss_pred cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCC
Confidence 999999999999988531 122223455678999999999998854455566899999997662222354444
No 305
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.80 E-value=0.0077 Score=56.04 Aligned_cols=182 Identities=13% Similarity=0.079 Sum_probs=105.0
Q ss_pred CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccc-ccCCCeEEeccCCCCceeEecCCceeeecCCcceee-ecc--
Q 012367 233 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS-NAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQEL-HGH-- 308 (465)
Q Consensus 233 dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gh-- 308 (465)
++.++++++.++.|..||..+++.............. ......+.+.........+.... ++.+... ...
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~t------G~~~W~~~~~~~~ 108 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKT------GKVLWSIYLTSSP 108 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTT------SCEEEEEEE-SSC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCC------cceeeeecccccc
Confidence 5667888899999999999998887766653332221 12222222222111111111111 1122221 111
Q ss_pred --c-cceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCC-c----------e-EEEEEccCCCCEEEEEeCCCc
Q 012367 309 --K-GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN-Y----------V-TCVQFNPIDDNYFISGSIDGK 373 (465)
Q Consensus 309 --~-~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~-~----------V-~~i~fsp~~~~~l~sgs~Dg~ 373 (465)
. .......+. ++.++.+..++.|..+|+.+|+.+..+.-.. . + ..+.+. ++ .++.++.++.
T Consensus 109 ~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~v~~~~~~g~ 184 (238)
T PF13360_consen 109 PAGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS--DG-RVYVSSGDGR 184 (238)
T ss_dssp TCSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC--TT-EEEEECCTSS
T ss_pred ccccccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE--CC-EEEEEcCCCe
Confidence 0 011112222 5678888889999999999999988874222 1 1 223332 34 6666666775
Q ss_pred -EEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceee
Q 012367 374 -VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL 427 (465)
Q Consensus 374 -I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~ 427 (465)
+.+ |+.+++.+ |......+.. ...+++..|++++.+|.+..||+.+++...
T Consensus 185 ~~~~-d~~tg~~~-w~~~~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 185 VVAV-DLATGEKL-WSKPISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp EEEE-ETTTTEEE-EEECSS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred EEEE-ECCCCCEE-EEecCCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 555 99999866 4332233332 145677888888899999999999997753
No 306
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.73 E-value=0.013 Score=55.10 Aligned_cols=130 Identities=15% Similarity=0.182 Sum_probs=86.9
Q ss_pred ccceEEEEecCCCE-EEEEeCC--------CeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEE-EEeCCCcEEEEe
Q 012367 309 KGDVLDLAWSNSNY-LLSCSMD--------KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDGKVRIWG 378 (465)
Q Consensus 309 ~~~V~~l~~s~~~~-l~s~s~D--------gtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~-sgs~Dg~I~iwd 378 (465)
....+++++.++|. .++.... +.|..++.. ++.......-...+.|+|+| +++.|+ +-+..+.|..++
T Consensus 85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~ 162 (246)
T PF08450_consen 85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSP-DGKTLYVADSFNGRIWRFD 162 (246)
T ss_dssp TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEET-TSSEEEEEETTTTEEEEEE
T ss_pred cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECC-cchheeecccccceeEEEe
Confidence 35678899999874 4444433 457777877 66655555556778999999 887654 667788899998
Q ss_pred CCC--CeEE------ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEE
Q 012367 379 VCE--KRVV------DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQG 448 (465)
Q Consensus 379 ~~~--~~~~------~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f 448 (465)
+.. ..+. .........-.+++.++|+..++....+.|.+++..+ ++ +..+.+.. ..+|++.|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G-~~-~~~i~~p~------~~~t~~~f 232 (246)
T PF08450_consen 163 LDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDG-KL-LREIELPV------PRPTNCAF 232 (246)
T ss_dssp EETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTS-CE-EEEEE-SS------SSEEEEEE
T ss_pred ccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCc-cE-EEEEcCCC------CCEEEEEE
Confidence 853 2111 1222333578899999999888888899999999884 33 22343332 36889998
No 307
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.72 E-value=0.0013 Score=64.71 Aligned_cols=122 Identities=12% Similarity=0.039 Sum_probs=85.3
Q ss_pred CeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeC----------CCcEEEEeCCCCeEEecccCC--------
Q 012367 330 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI----------DGKVRIWGVCEKRVVDWADVR-------- 391 (465)
Q Consensus 330 gtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~----------Dg~I~iwd~~~~~~~~~~~~~-------- 391 (465)
++|.+.|..+++.+..+.-...-..+ ++| +++.++.+.. +..|.+||..+.+.+.-....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~sp-Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VAS-DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECC-CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 89999999999999998654444445 999 8777766655 789999999999887644332
Q ss_pred CCeEEEEEeeCCCEEEEEE-c-CCcEEEEEecCCceeeeEeeecC-cccccCCceeeEEEeecCCc
Q 012367 392 DVISAICYIPDGKGFIVGS-I-TGTCHFYKASGNDLKLEKVDFHD-RKKTSGNKITGIQGRISKNY 454 (465)
Q Consensus 392 ~~V~sv~~spdg~~l~sgs-~-dG~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~It~~~f~p~gs~ 454 (465)
.....++++|||++|++.. . +..|.+.|+.+++...+ +...+ ........-+.+.++.+|+.
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~e-i~vp~~~~vy~t~e~~~~~~~~Dg~~ 169 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRM-MDVPDCYHIFPTANDTFFMHCRDGSL 169 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEE-EeCCCCcEEEEecCCccEEEeecCce
Confidence 2344899999999999877 3 68999999999877543 32222 22222233334455555544
No 308
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.67 E-value=6.4e-05 Score=47.07 Aligned_cols=36 Identities=39% Similarity=0.939 Sum_probs=32.5
Q ss_pred hhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEe
Q 012367 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWH 250 (465)
Q Consensus 215 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd 250 (465)
...+.+|...|+++.|++++.++++++.|+.|++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345668999999999999999999999999999996
No 309
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.63 E-value=0.005 Score=68.68 Aligned_cols=200 Identities=16% Similarity=0.238 Sum_probs=114.0
Q ss_pred CCCcEEEEEECCCCCEEEEEeC---C---CcEEEEecCCceeeeeeecCCCC--cccccCCCeEEeccCC--CCc-eeEe
Q 012367 221 HKGCIWTLKFSPDGRYLASGGE---D---GVVRIWHVTSVAASCKSFTDDGG--FGSNAKEGKIKFGKKK--SSH-VPVV 289 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaSgs~---D---g~V~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~-~~~~ 289 (465)
+...-..|+|-.||.|+|+.+. . ..||||+-+ +..........+- ..+....+.+...... ... ...+
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence 4445668999999999998875 3 579999976 3332222221111 1111111111111100 011 1111
Q ss_pred cCCceeeecCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCe--EeEEe--cCCCceEEEEEccCCCCEE
Q 012367 290 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ--CLNVF--DHHNYVTCVQFNPIDDNYF 365 (465)
Q Consensus 290 ~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~--~l~~~--~h~~~V~~i~fsp~~~~~l 365 (465)
-.++.-.- .-...+......|..|.|++++-+++.-....|.+|-..+.+ ....+ .....+..+.|+|.+...|
T Consensus 287 ErNGLrhg--eF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L 364 (928)
T PF04762_consen 287 ERNGLRHG--EFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRL 364 (928)
T ss_pred ecCCcEee--eEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEE
Confidence 11111000 000001234568999999998644433444459999998765 22233 3444566699999777878
Q ss_pred EEEeCCCcEEEEeC----CCC---------eEE-----------------------ecccCCCCeEEEEEeeCCCEEEEE
Q 012367 366 ISGSIDGKVRIWGV----CEK---------RVV-----------------------DWADVRDVISAICYIPDGKGFIVG 409 (465)
Q Consensus 366 ~sgs~Dg~I~iwd~----~~~---------~~~-----------------------~~~~~~~~V~sv~~spdg~~l~sg 409 (465)
.....+|.+.++++ ..+ .+. ........|.+++|++++..+++-
T Consensus 365 ~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl 444 (928)
T PF04762_consen 365 HVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVL 444 (928)
T ss_pred EEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEE
Confidence 88877677766544 111 110 012245679999999999889999
Q ss_pred EcCCcEEEEEecCC
Q 012367 410 SITGTCHFYKASGN 423 (465)
Q Consensus 410 s~dG~v~iwd~~~~ 423 (465)
..||.+.+|.....
T Consensus 445 ~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 445 TSDGSLSIYEWDLK 458 (928)
T ss_pred ECCCCEEEEEecCC
Confidence 99999999996544
No 310
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.59 E-value=0.0012 Score=67.17 Aligned_cols=95 Identities=18% Similarity=0.262 Sum_probs=74.3
Q ss_pred ccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe--
Q 012367 307 GHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR-- 383 (465)
Q Consensus 307 gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~-- 383 (465)
.....|.+.+++|+ ..|+.|..||+|.+||...+..... ...-.++.++|+| ++.+|++|+.-|.+.+||+.-..
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCccc
Confidence 46788999999997 5999999999999999987744433 5556789999999 99999999999999999985322
Q ss_pred ------------EEe---cccCCCCeEEEEEeeCC
Q 012367 384 ------------VVD---WADVRDVISAICYIPDG 403 (465)
Q Consensus 384 ------------~~~---~~~~~~~V~sv~~spdg 403 (465)
.+. ...+...+..+.|.+..
T Consensus 335 ~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~ 369 (545)
T PF11768_consen 335 MQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAP 369 (545)
T ss_pred eeeccccCCCccEEeeehhccCcchhheeEeccCC
Confidence 111 23455667778888554
No 311
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.55 E-value=0.01 Score=56.77 Aligned_cols=101 Identities=17% Similarity=0.229 Sum_probs=68.3
Q ss_pred EeCCCeEEEEeCCCCeEeEEec-----CCCceEEEEEccCCCCEEEEEeCCCc-------EEEEeCCCC-eEE-----ec
Q 012367 326 CSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSIDGK-------VRIWGVCEK-RVV-----DW 387 (465)
Q Consensus 326 ~s~DgtV~lWD~~~~~~l~~~~-----h~~~V~~i~fsp~~~~~l~sgs~Dg~-------I~iwd~~~~-~~~-----~~ 387 (465)
..++-.+.+-|..+|+.+.... |...|..+++.+ ++..++..-..|. |-+++.... +.. .+
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~ 212 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQW 212 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHH
Confidence 3445567777888888776642 666899999998 7776665544332 334433221 111 13
Q ss_pred ccCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCceee
Q 012367 388 ADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKL 427 (465)
Q Consensus 388 ~~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~~~ 427 (465)
......+-+|+++++|..+++.+- -|.+.+||..++.+.-
T Consensus 213 ~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~ 253 (305)
T PF07433_consen 213 RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLG 253 (305)
T ss_pred HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEee
Confidence 456788999999999988877665 6788999999887743
No 312
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.55 E-value=0.017 Score=58.06 Aligned_cols=102 Identities=17% Similarity=0.173 Sum_probs=73.2
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecc-cCCC-CeEEE
Q 012367 320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA-DVRD-VISAI 397 (465)
Q Consensus 320 ~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~-~~~~-~V~sv 397 (465)
++.++.++.++.+..||..+++.+........ ..... .+..++.++.+|.|..+|..+++.+... .... ...+.
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~-~~p~~---~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp 316 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDASSY-QGPAV---DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAP 316 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeeccCCc-cCceE---eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccC
Confidence 46788888999999999999988777653322 12222 4567778888999999999998766422 2222 22222
Q ss_pred EEeeCCCEEEEEEcCCcEEEEEecCCceee
Q 012367 398 CYIPDGKGFIVGSITGTCHFYKASGNDLKL 427 (465)
Q Consensus 398 ~~spdg~~l~sgs~dG~v~iwd~~~~~~~~ 427 (465)
.. .+..+++++.+|.++++|..++++..
T Consensus 317 ~i--~g~~l~~~~~~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 317 AV--VGGYLVVGDFEGYLHWLSREDGSFVA 344 (377)
T ss_pred EE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 22 46689999999999999998887754
No 313
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.54 E-value=0.0013 Score=69.65 Aligned_cols=133 Identities=15% Similarity=0.166 Sum_probs=98.6
Q ss_pred eEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeC---------CCcEEEEeCCC
Q 012367 312 VLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSI---------DGKVRIWGVCE 381 (465)
Q Consensus 312 V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~---------Dg~I~iwd~~~ 381 (465)
|.=|. .++.++.+|...|+|.+-|..+.+.+++| .|.+.|..+.. .|+.|+++|. |..|+|||+++
T Consensus 180 v~imR-~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRm 255 (1118)
T KOG1275|consen 180 VTIMR-YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRM 255 (1118)
T ss_pred eEEEE-ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec---cCCeEEEeecccccccccccchhhhhhhhh
Confidence 44444 34468889999999999999999999999 49999988776 7899999875 56689999999
Q ss_pred CeEEecccCCCCeEEEEEeeCC-CEEEEEEcCCcEEEEEecCCcee---eeEeeecCcccccCCceeeEEEeecCCc
Q 012367 382 KRVVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLK---LEKVDFHDRKKTSGNKITGIQGRISKNY 454 (465)
Q Consensus 382 ~~~~~~~~~~~~V~sv~~spdg-~~l~sgs~dG~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~It~~~f~p~gs~ 454 (465)
.+.+.-........-+.|+|.- ..+++++..|.+.+-|..+-.-+ ...+.. .+..|+++.++++|..
T Consensus 256 mral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p------~~s~i~~fDiSsn~~a 326 (1118)
T KOG1275|consen 256 MRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNP------NGSGISAFDISSNGDA 326 (1118)
T ss_pred hhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEcc------CCCcceeEEecCCCce
Confidence 8777655544445667888854 57888999999999994432222 222222 2356999999988654
No 314
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.0077 Score=60.76 Aligned_cols=222 Identities=16% Similarity=0.271 Sum_probs=121.6
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCC-----------CcEEEEecCCceeeeeeecCCCCcccc-----cCCCeEEeccCCC
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGED-----------GVVRIWHVTSVAASCKSFTDDGGFGSN-----AKEGKIKFGKKKS 283 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~D-----------g~V~iWd~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 283 (465)
.|.+ |.-+.|||+.+||+|=|.. ..++|||+.++................ ..+... ++....
T Consensus 248 ~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy-~Arm~~ 325 (698)
T KOG2314|consen 248 YHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKY-FARMTG 325 (698)
T ss_pred cCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCce-eEEecc
Confidence 4554 8889999999999997642 578999999987665544422211100 000000 000111
Q ss_pred CceeEecCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEe-----CCCeEEEEeCCCCeEeEEecCCC-ceEEEE
Q 012367 284 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCS-----MDKTVRMWQVGCNQCLNVFDHHN-YVTCVQ 356 (465)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s-----~DgtV~lWD~~~~~~l~~~~h~~-~V~~i~ 356 (465)
..+.+.-.....-+..+++ ....|....|+|.. .|+-=+ .-..+.|-.+.+++.+++-...+ .=..+.
T Consensus 326 ~sisIyEtpsf~lld~Ksl-----ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLh 400 (698)
T KOG2314|consen 326 NSISIYETPSFMLLDKKSL-----KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLH 400 (698)
T ss_pred ceEEEEecCceeeeccccc-----CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEE
Confidence 1122221122222222222 23567788899965 333211 12456777777777666654211 112344
Q ss_pred EccCCCCEEEEE----------eCCCcEEEEeCCCCeE-EecccCCCCeEEEEEeeCCCEEEEEEc---CCcEEEEEecC
Q 012367 357 FNPIDDNYFISG----------SIDGKVRIWGVCEKRV-VDWADVRDVISAICYIPDGKGFIVGSI---TGTCHFYKASG 422 (465)
Q Consensus 357 fsp~~~~~l~sg----------s~Dg~I~iwd~~~~~~-~~~~~~~~~V~sv~~spdg~~l~sgs~---dG~v~iwd~~~ 422 (465)
|-. +|.||+.- +.-..+-|+.++...+ +........|.+.+|-|.|..+++-+. ..++.+|.+.+
T Consensus 401 WQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 401 WQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET 479 (698)
T ss_pred ecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence 544 66666532 2222356676665543 345667888999999999987766554 46899998885
Q ss_pred Cceeee-EeeecCcccccCCceeeEEEeecCCcc
Q 012367 423 NDLKLE-KVDFHDRKKTSGNKITGIQGRISKNYD 455 (465)
Q Consensus 423 ~~~~~~-~~~~~~~~~~~~~~It~~~f~p~gs~d 455 (465)
+..... ...+. ...-+.++|+|-|.+-
T Consensus 480 ~~~~~~lVk~~d------k~~~N~vfwsPkG~fv 507 (698)
T KOG2314|consen 480 NIKKPSLVKELD------KKFANTVFWSPKGRFV 507 (698)
T ss_pred CCCchhhhhhhc------ccccceEEEcCCCcEE
Confidence 332222 11111 1445678888887763
No 315
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.51 E-value=0.019 Score=53.60 Aligned_cols=150 Identities=16% Similarity=0.230 Sum_probs=93.7
Q ss_pred EEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec--------CCCceEEEEEccCC-----CCEEEEEeCCCcEEEEe
Q 012367 313 LDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--------HHNYVTCVQFNPID-----DNYFISGSIDGKVRIWG 378 (465)
Q Consensus 313 ~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~--------h~~~V~~i~fsp~~-----~~~l~sgs~Dg~I~iwd 378 (465)
..++|+||+ +|+.+...|+|+++|+-.. .+..+. ....|..+.|.+.. ...|+.-..+|.++=|-
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~ 125 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL 125 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence 568999986 7888888999999999743 333332 23467777776532 23566667788888777
Q ss_pred CCCCe--------EEec-ccCCCCeEEEEEeeCCCEEEEEEc----CC-------cEEEEEecCCceeeeEe--------
Q 012367 379 VCEKR--------VVDW-ADVRDVISAICYIPDGKGFIVGSI----TG-------TCHFYKASGNDLKLEKV-------- 430 (465)
Q Consensus 379 ~~~~~--------~~~~-~~~~~~V~sv~~spdg~~l~sgs~----dG-------~v~iwd~~~~~~~~~~~-------- 430 (465)
+..+. ...+ ..+...|+++.|+|..+.|++|+. ++ -+..|.+-++..-+.+.
T Consensus 126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~ 205 (282)
T PF15492_consen 126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDIT 205 (282)
T ss_pred EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccc
Confidence 63321 1112 234778999999999888888774 11 24567654332222111
Q ss_pred --------------eecCcccccCCceeeEEEeecCCcc-------ceeeeecC
Q 012367 431 --------------DFHDRKKTSGNKITGIQGRISKNYD-------NFRRFQTP 463 (465)
Q Consensus 431 --------------~~~~~~~~~~~~It~~~f~p~gs~d-------~~~~~~~p 463 (465)
.+..++......|..+.++|+|+.. .+-+|..|
T Consensus 206 ~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 206 ASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred ccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence 1111112234678888999998763 36777777
No 316
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.50 E-value=0.025 Score=56.84 Aligned_cols=106 Identities=14% Similarity=0.040 Sum_probs=71.1
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeEeEEecCCCc--------eEEEEEcc-CCCCEEEEEeCCCcEEEEeCCCCeEEecccC
Q 012367 320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY--------VTCVQFNP-IDDNYFISGSIDGKVRIWGVCEKRVVDWADV 390 (465)
Q Consensus 320 ~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~--------V~~i~fsp-~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~ 390 (465)
++.++.+..++.+..+|+.+|+.+........ +..+.-.| ..+..++.++.+|.++.||..+++.+.....
T Consensus 190 ~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~ 269 (377)
T TIGR03300 190 DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA 269 (377)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc
Confidence 35788888899999999999987765431110 00111111 1345777788899999999999877653332
Q ss_pred CCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367 391 RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 428 (465)
Q Consensus 391 ~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~ 428 (465)
.. .... ..++..+++++.+|.++.+|..+++....
T Consensus 270 ~~-~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~ 304 (377)
T TIGR03300 270 SS-YQGP--AVDDNRLYVTDADGVVVALDRRSGSELWK 304 (377)
T ss_pred CC-ccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEc
Confidence 22 1222 23567888889999999999998876543
No 317
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.47 E-value=0.0089 Score=48.17 Aligned_cols=101 Identities=24% Similarity=0.303 Sum_probs=72.4
Q ss_pred EEEEEECC---CC-CEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367 225 IWTLKFSP---DG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (465)
Q Consensus 225 I~~l~fsp---dg-~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (465)
|++|++.. +| +.|+.||+|..||||+=...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~---------------------------------------------- 35 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI---------------------------------------------- 35 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE----------------------------------------------
Confidence 66777655 33 38999999999999986531
Q ss_pred cceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCC---CEEEEEeCCCcEE
Q 012367 301 PLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDD---NYFISGSIDGKVR 375 (465)
Q Consensus 301 ~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~---~~l~sgs~Dg~I~ 375 (465)
+.++. -++.|++++-...+.++.+..+|||-+|+- ...+...+....++++++...++ .-|++|-.+|.|-
T Consensus 36 -~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 36 -VAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -EEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 22222 346788888877789999999999999976 33445555556688887765332 2688898888874
No 318
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.46 E-value=6.1e-05 Score=76.60 Aligned_cols=162 Identities=20% Similarity=0.298 Sum_probs=104.4
Q ss_pred ccCCCcEEEEEECCC-CCEEEEE----eCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367 219 QAHKGCIWTLKFSPD-GRYLASG----GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (465)
Q Consensus 219 ~~H~~~I~~l~fspd-g~~LaSg----s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (465)
.+|..+.++++|++- ...||.| -.|..+.|||+.+.-.... .
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPk---------------------------------e 145 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPK---------------------------------E 145 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCc---------------------------------c
Confidence 478889999999984 4567766 2366799999987422000 0
Q ss_pred eeeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCC
Q 012367 294 VFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG 372 (465)
Q Consensus 294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg 372 (465)
.+. ... +......+++|-.+ .++++|...+.+.++|++........-....|..+...|..++|+++-. ||
T Consensus 146 ~~~-----fs~--~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg 217 (783)
T KOG1008|consen 146 SPL-----FSS--STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DG 217 (783)
T ss_pred ccc-----ccc--ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cC
Confidence 000 000 12233447778755 4778888888999999984432222224456778888888889998877 99
Q ss_pred cEEEEeC-CC-CeEEeccc-----CCCCeEEEEEeeCCC-EEEEEEc-CCcEEEEEec
Q 012367 373 KVRIWGV-CE-KRVVDWAD-----VRDVISAICYIPDGK-GFIVGSI-TGTCHFYKAS 421 (465)
Q Consensus 373 ~I~iwd~-~~-~~~~~~~~-----~~~~V~sv~~spdg~-~l~sgs~-dG~v~iwd~~ 421 (465)
.|.+||. +. ...+.... ....+..++|.|... .+++.+. .++|++||+.
T Consensus 218 ~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 218 DIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 9999994 32 22222222 223499999999544 3444444 5899999986
No 319
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.46 E-value=0.011 Score=47.55 Aligned_cols=99 Identities=18% Similarity=0.282 Sum_probs=72.4
Q ss_pred eEEEEecC---C--CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe
Q 012367 312 VLDLAWSN---S--NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD 386 (465)
Q Consensus 312 V~~l~~s~---~--~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~ 386 (465)
|++|++.+ + +.|+.||.|..||+|+-. ..+..+...+.|++++-.. ...|+.+...|+|-+|+-... +-+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~R-lWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLG--GGRFAYALANGTVGVYDRSQR-LWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcC--CCEEEEEecCCEEEEEeCcce-eee
Confidence 56677653 3 489999999999999854 6788888888999998876 477999999999999986333 333
Q ss_pred cccCCCCeEEEEEee-CC---CEEEEEEcCCcEE
Q 012367 387 WADVRDVISAICYIP-DG---KGFIVGSITGTCH 416 (465)
Q Consensus 387 ~~~~~~~V~sv~~sp-dg---~~l~sgs~dG~v~ 416 (465)
... ...++++++.. +| .-|++|-.+|.|-
T Consensus 77 iKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 222 23366665543 33 3689998899874
No 320
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.45 E-value=0.0062 Score=56.65 Aligned_cols=108 Identities=17% Similarity=0.130 Sum_probs=77.4
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEec-ccCC----CC
Q 012367 319 NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW-ADVR----DV 393 (465)
Q Consensus 319 ~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~-~~~~----~~ 393 (465)
.++.+++++.++.|..||..+|+.+..+.....+...... .+..++.++.++.|+.+|..++++... .... ..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV--DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV 112 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE--ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee--cccccccccceeeeEecccCCcceeeeecccccccccc
Confidence 5678888899999999999999999888644432222221 456667777888999999999987754 2211 12
Q ss_pred eEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367 394 ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 428 (465)
Q Consensus 394 V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~ 428 (465)
........++..++++..+|.+..+|+.++++...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~ 147 (238)
T PF13360_consen 113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWK 147 (238)
T ss_dssp B--SEEEEETTEEEEEETCSEEEEEETTTTEEEEE
T ss_pred ccccCceEecCEEEEEeccCcEEEEecCCCcEEEE
Confidence 23334444588999999999999999999987544
No 321
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.35 E-value=0.0031 Score=64.37 Aligned_cols=145 Identities=16% Similarity=0.181 Sum_probs=70.7
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (465)
...-....|.++|+|++++.++ ||.-.|+.......
T Consensus 30 ~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~------------------------------------------- 65 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRN------------------------------------------- 65 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEE-------------------------------------------
T ss_pred CCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcc-------------------------------------------
Confidence 3444577999999999988854 56666766322111
Q ss_pred CcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeC
Q 012367 300 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379 (465)
Q Consensus 300 ~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~ 379 (465)
...+.-...+|.+.+.+++-....+|.|+.--.....+.+.....+..|-. |.+|+..+. +.|.+||.
T Consensus 66 -------k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~----G~LL~~~~~-~~i~~yDw 133 (443)
T PF04053_consen 66 -------KAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG----GNLLGVKSS-DFICFYDW 133 (443)
T ss_dssp -------EEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-EEEEE-----SSSEEEEET-TEEEEE-T
T ss_pred -------cccCceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcCCcccceEEc----CcEEEEECC-CCEEEEEh
Confidence 012334456676666666666667777753222222333433333444432 555555543 36777777
Q ss_pred CCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367 380 CEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG 422 (465)
Q Consensus 380 ~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~ 422 (465)
.+++++....... |..|.|+++|.+++..+.+ .+.+++...
T Consensus 134 ~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 134 ETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp TT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred hHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence 7777776555443 6777777777777776644 555655443
No 322
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0005 Score=66.52 Aligned_cols=82 Identities=16% Similarity=0.208 Sum_probs=73.1
Q ss_pred cceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEe
Q 012367 301 PLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 378 (465)
Q Consensus 301 ~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd 378 (465)
+...+.+|...|.+++|+|. |++..++.+.+|+|.|+++..++..+.....+++++|.-.+.+++..|-..|.|.|||
T Consensus 185 ssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 185 SSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred hhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEE
Confidence 34466788899999999985 5899999999999999999999999987799999999997788999999999999999
Q ss_pred CCCC
Q 012367 379 VCEK 382 (465)
Q Consensus 379 ~~~~ 382 (465)
++..
T Consensus 265 ~R~~ 268 (463)
T KOG1645|consen 265 MRQP 268 (463)
T ss_pred ccCC
Confidence 9764
No 323
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.00089 Score=68.37 Aligned_cols=79 Identities=18% Similarity=0.289 Sum_probs=69.3
Q ss_pred CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeE-EEEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367 348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS-AICYIPDGKGFIVGSITGTCHFYKASGNDLK 426 (465)
Q Consensus 348 h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~-sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~ 426 (465)
....|..+.|+| ...++|.+..+|.|.+.-+.-+++.++.-+...++ ++||.|||+.|++|-.||+|++.|+..+...
T Consensus 19 l~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 19 LPINIKRIEWNP-KMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cccceEEEEEcC-ccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 445688899999 99999999999999999999888888776666666 9999999999999999999999999987664
Q ss_pred e
Q 012367 427 L 427 (465)
Q Consensus 427 ~ 427 (465)
.
T Consensus 98 ~ 98 (665)
T KOG4640|consen 98 V 98 (665)
T ss_pred e
Confidence 3
No 324
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.22 E-value=0.035 Score=61.16 Aligned_cols=120 Identities=8% Similarity=0.206 Sum_probs=77.9
Q ss_pred EEEEecCCC-EEEEE----eCC-CeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEe---CCCcEEEEeCCCC
Q 012367 313 LDLAWSNSN-YLLSC----SMD-KTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS---IDGKVRIWGVCEK 382 (465)
Q Consensus 313 ~~l~~s~~~-~l~s~----s~D-gtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs---~Dg~I~iwd~~~~ 382 (465)
+.|.|-.+| ++++. -.+ +.|++||-. |..-..- ....-=.+++|-| .|..+++-. .|+.|.+|....-
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL 276 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGL 276 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCc
Confidence 358888887 55542 234 799999987 3322111 1222345899999 888888753 3567999986543
Q ss_pred e---EEe-cccCCCCeEEEEEeeCCCEEEE---EEcCCcEEEEEecCCceeee-EeeecC
Q 012367 383 R---VVD-WADVRDVISAICYIPDGKGFIV---GSITGTCHFYKASGNDLKLE-KVDFHD 434 (465)
Q Consensus 383 ~---~~~-~~~~~~~V~sv~~spdg~~l~s---gs~dG~v~iwd~~~~~~~~~-~~~~~~ 434 (465)
+ ... +......|..++|+.++..|++ ......|++|-+.+...-++ .+.+..
T Consensus 277 ~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~ 336 (1265)
T KOG1920|consen 277 RHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQ 336 (1265)
T ss_pred cccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEeccc
Confidence 2 222 3333334999999999999888 44455599999987776555 444433
No 325
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.21 E-value=7.1e-05 Score=76.16 Aligned_cols=184 Identities=14% Similarity=0.186 Sum_probs=117.9
Q ss_pred CCcEEEEEECCCCC--EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367 222 KGCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (465)
Q Consensus 222 ~~~I~~l~fspdg~--~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (465)
...+.|+++.-+.. .++.|..+|.|-+-.+....-.
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS------------------------------------------ 93 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS------------------------------------------ 93 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc------------------------------------------
Confidence 44567777765443 7889999999988877652111
Q ss_pred CcceeeeccccceEEEEecCC--CEEEEEe----CCCeEEEEeCCCC--eEe--EEe--cCCCceEEEEEccCCCCEEEE
Q 012367 300 SPLQELHGHKGDVLDLAWSNS--NYLLSCS----MDKTVRMWQVGCN--QCL--NVF--DHHNYVTCVQFNPIDDNYFIS 367 (465)
Q Consensus 300 ~~~~~~~gh~~~V~~l~~s~~--~~l~s~s----~DgtV~lWD~~~~--~~l--~~~--~h~~~V~~i~fsp~~~~~l~s 367 (465)
.-....+|....++++|++- +.|++|- .|..+.|||+.++ .+. ..| .......+++|-. +.+++++
T Consensus 94 -s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvla 171 (783)
T KOG1008|consen 94 -SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLA 171 (783)
T ss_pred -cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCcccccccc-Ccchhhc
Confidence 01123467788999999973 4666552 2457999999876 221 112 1334566889986 8999999
Q ss_pred EeCCCcEEEEeCCCCeEEecccCCCCeEEEEEee-CCCEEEEEEcCCcEEEEEe-cCCceeeeEeeecCcccccCCceee
Q 012367 368 GSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKA-SGNDLKLEKVDFHDRKKTSGNKITG 445 (465)
Q Consensus 368 gs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~sp-dg~~l~sgs~dG~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~It~ 445 (465)
|...+.+.++|++........-.+..+..+...| .+.++++-. ||.|-+||. ..-+-++.++ .+. ..+..+++..
T Consensus 172 Gm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i-~~~-~N~~~~~l~~ 248 (783)
T KOG1008|consen 172 GMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQII-LRN-ENKKPKQLFA 248 (783)
T ss_pred ccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHH-hhC-CCCcccceee
Confidence 9999999999998544332222334566677788 666777655 999999994 3222222222 222 1222346888
Q ss_pred EEEeecC
Q 012367 446 IQGRISK 452 (465)
Q Consensus 446 ~~f~p~g 452 (465)
++++|..
T Consensus 249 ~aycPtr 255 (783)
T KOG1008|consen 249 LAYCPTR 255 (783)
T ss_pred EEeccCC
Confidence 8888864
No 326
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0018 Score=66.30 Aligned_cols=91 Identities=16% Similarity=0.199 Sum_probs=76.7
Q ss_pred ccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEec-CCCceE-EEEEccCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 012367 309 KGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVT-CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 385 (465)
Q Consensus 309 ~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~-~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~ 385 (465)
...|.-+.|+|. .++|.+..+|.|.+..+. .+.+.++. +...|+ +++|.| ||+.++.|-.||+|++-|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 346778899997 589999999999999998 77788887 777777 999999 9999999999999999999988766
Q ss_pred ec--ccCCCCeEEEEEee
Q 012367 386 DW--ADVRDVISAICYIP 401 (465)
Q Consensus 386 ~~--~~~~~~V~sv~~sp 401 (465)
.. ......|..+-|.|
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 53 44566778887763
No 327
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.15 E-value=0.0056 Score=64.58 Aligned_cols=182 Identities=18% Similarity=0.325 Sum_probs=119.9
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCccee
Q 012367 225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 304 (465)
Q Consensus 225 I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (465)
+++++|+|..-.||.|=+-|.+.+|...+.+.. ..
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h---------------------------------------------tv 96 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH---------------------------------------------TV 96 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceee---------------------------------------------ee
Confidence 456999999889999999999999987753221 12
Q ss_pred eeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCC-Ce--EeEEecC--CCceE--EEEEcc-----------------
Q 012367 305 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-NQ--CLNVFDH--HNYVT--CVQFNP----------------- 359 (465)
Q Consensus 305 ~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~-~~--~l~~~~h--~~~V~--~i~fsp----------------- 359 (465)
...|..+|..+.|+++| .++|+..-|.|.+|.... |+ ....+.| ...++ |...+|
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe 176 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDE 176 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCch
Confidence 23599999999999975 899999999999997642 11 0111111 11111 111111
Q ss_pred -----------------------CCCCEEEEEeCCCcEEEEeCCCCe--------------------E--E---------
Q 012367 360 -----------------------IDDNYFISGSIDGKVRIWGVCEKR--------------------V--V--------- 385 (465)
Q Consensus 360 -----------------------~~~~~l~sgs~Dg~I~iwd~~~~~--------------------~--~--------- 385 (465)
.++..|..++.+|+|+-.|-...+ + +
T Consensus 177 ~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~ 256 (1416)
T KOG3617|consen 177 SALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQNGRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLI 256 (1416)
T ss_pred hhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCCCcEEEEEEccchHHHHHhcccceEEEEeeeceeeEE
Confidence 145577777888888877743211 0 0
Q ss_pred --------------ec---------------------------ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCc
Q 012367 386 --------------DW---------------------------ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 424 (465)
Q Consensus 386 --------------~~---------------------------~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~ 424 (465)
.. ......++++||...+..|+.|+..|++.+|--.+..
T Consensus 257 ~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~ 336 (1416)
T KOG3617|consen 257 FVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKG 336 (1416)
T ss_pred EecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCcc
Confidence 00 0012348999999999999999999999999755443
Q ss_pred ee----eeEeeecCcccccCCceeeEEEeecC
Q 012367 425 LK----LEKVDFHDRKKTSGNKITGIQGRISK 452 (465)
Q Consensus 425 ~~----~~~~~~~~~~~~~~~~It~~~f~p~g 452 (465)
++ ...+.+++ +......|+.++|.|-.
T Consensus 337 f~g~p~~d~w~l~~-~~e~~g~I~~i~Wg~~k 367 (1416)
T KOG3617|consen 337 FQGDPTIDVWTLNG-KRESLGKISLIRWGPIK 367 (1416)
T ss_pred ccCCCCcceEEecC-chhhccceEEEEecccc
Confidence 32 22566666 44456789999998843
No 328
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.13 E-value=0.057 Score=54.46 Aligned_cols=199 Identities=19% Similarity=0.250 Sum_probs=104.2
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEecCCceeee-eeecCCC-----CcccccCCCeEEeccCCCCceeEecCCceeee
Q 012367 224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASC-KSFTDDG-----GFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 297 (465)
Q Consensus 224 ~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (465)
.|+.|.|+++..-||.|-..|-|.||.+...+... ....... .+........+....... +.. ..-
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~-------~~~-~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRA-------PPS-LKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG---------TT--SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhC-------Ccc-ccc
Confidence 58999999998899999999999999886532221 0000000 000000011111000000 000 000
Q ss_pred cCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec---------CCCceEEEEEccC----CC--
Q 012367 298 EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---------HHNYVTCVQFNPI----DD-- 362 (465)
Q Consensus 298 ~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~---------h~~~V~~i~fsp~----~~-- 362 (465)
.-.|...++...++|++++.++=|+++.|..+|.+.|.|++....+..-. ...+|+++.|... |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS 154 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS 154 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred ccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence 11345556667899999999988999999999999999999888776632 2347899988731 22
Q ss_pred -CEEEEEeCCCcEEEEeCCC---Ce----EEec-ccCCCCeEEEE-EeeC-----------------C---CEEEEEEcC
Q 012367 363 -NYFISGSIDGKVRIWGVCE---KR----VVDW-ADVRDVISAIC-YIPD-----------------G---KGFIVGSIT 412 (465)
Q Consensus 363 -~~l~sgs~Dg~I~iwd~~~---~~----~~~~-~~~~~~V~sv~-~spd-----------------g---~~l~sgs~d 412 (465)
-.+++|...|.+.+|.+.- +. .... ..+.+.|..+. ++.+ | ..+++...+
T Consensus 155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe 234 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE 234 (395)
T ss_dssp EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence 3688899999999998741 21 1122 24556666655 3222 1 234555557
Q ss_pred CcEEEEEecCCceeeeEe
Q 012367 413 GTCHFYKASGNDLKLEKV 430 (465)
Q Consensus 413 G~v~iwd~~~~~~~~~~~ 430 (465)
..++++...+.+...+.+
T Consensus 235 ~~irv~~~~~~k~~~K~~ 252 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSF 252 (395)
T ss_dssp SEEEEE-TT---EEEEE-
T ss_pred cceEEEeCCCCcccceee
Confidence 789999988776644433
No 329
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.12 E-value=0.0017 Score=40.12 Aligned_cols=37 Identities=38% Similarity=0.764 Sum_probs=31.4
Q ss_pred eEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEe
Q 012367 341 QCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 378 (465)
Q Consensus 341 ~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd 378 (465)
+++..+ .|...|.+++|+| .+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 445555 4778999999999 779999999999999996
No 330
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.11 E-value=0.08 Score=49.76 Aligned_cols=199 Identities=17% Similarity=0.194 Sum_probs=95.7
Q ss_pred hhhccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCC-CC---cccccCCCeEEeccCCCCcee-Ee
Q 012367 216 QEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDD-GG---FGSNAKEGKIKFGKKKSSHVP-VV 289 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~-~~ 289 (465)
+.+.+-...|..|+|+|+.. ++|.....+.|...+.. ++......... .. +.. ...+...+......... +.
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y-~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITY-LGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE--STTEEEEEETTTTEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEE-ECCCEEEEEEcCCCcEEEEE
Confidence 45566667799999999755 77777788888888865 44443332211 11 111 11122222222111111 11
Q ss_pred cCC--ceeeecC-Cc--ceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCC---CeEeEEe---c------CCCc
Q 012367 290 IPD--EVFQIEE-SP--LQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGC---NQCLNVF---D------HHNY 351 (465)
Q Consensus 290 ~~~--~~~~~~~-~~--~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~---~~~l~~~---~------h~~~ 351 (465)
... ....... .. +.....++..+-.++|.+. +.|+.+-......||.+.. ...+... . .-..
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 111 0000000 00 0011235567899999985 5666666666667776643 2222221 1 3345
Q ss_pred eEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCC----------CCeEEEEEeeCCCEEEEEEcCCcEEEE
Q 012367 352 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR----------DVISAICYIPDGKGFIVGSITGTCHFY 418 (465)
Q Consensus 352 V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~----------~~V~sv~~spdg~~l~sgs~dG~v~iw 418 (465)
+..++++|..+++++.......|.++| ..|+++...... ...-.|+|.++|+..++ +.-+..++|
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 789999998888999999999999999 556555422211 24778999999965555 454444433
No 331
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.09 E-value=0.043 Score=55.33 Aligned_cols=196 Identities=14% Similarity=0.145 Sum_probs=101.8
Q ss_pred hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (465)
.-++...++|++++.|.-| ++|.|.++|.+.|.|+.....+.......
T Consensus 80 ~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~------------------------------- 127 (395)
T PF08596_consen 80 TLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRE------------------------------- 127 (395)
T ss_dssp EEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG-------------------------------
T ss_pred hheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccc-------------------------------
Confidence 4455669999999998666 99999999999999998765544321111
Q ss_pred eecCCcceeeeccccceEEEEec-----CCC----EEEEEeCCCeEEEEeCC--C-Ce----EeEEe-cCCCceEEEE-E
Q 012367 296 QIEESPLQELHGHKGDVLDLAWS-----NSN----YLLSCSMDKTVRMWQVG--C-NQ----CLNVF-DHHNYVTCVQ-F 357 (465)
Q Consensus 296 ~~~~~~~~~~~gh~~~V~~l~~s-----~~~----~l~s~s~DgtV~lWD~~--~-~~----~l~~~-~h~~~V~~i~-f 357 (465)
...-......|+++.|. .++ .++.|...|.+.+|.+- . +. ..... .+.+.|..|. |
T Consensus 128 ------~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i 201 (395)
T PF08596_consen 128 ------SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPI 201 (395)
T ss_dssp --------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEE
T ss_pred ------cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEE
Confidence 00001133456677775 233 68888999999999764 1 21 11222 3556666555 3
Q ss_pred ccCC--------------------CCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEe-----eCCCEEEEEEc
Q 012367 358 NPID--------------------DNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYI-----PDGKGFIVGSI 411 (465)
Q Consensus 358 sp~~--------------------~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~s-----pdg~~l~sgs~ 411 (465)
+... ..+++.++ +..+||+...+.+... ..........+++- ..+..|++-..
T Consensus 202 ~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~ 280 (395)
T PF08596_consen 202 NADTGESALATISAMQGLSKGISIPGYVVVVS-ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN 280 (395)
T ss_dssp ETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET
T ss_pred ECCCCCcccCchhHhhccccCCCcCcEEEEEc-ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC
Confidence 2211 11444444 7889999998776554 22222334445553 35678888899
Q ss_pred CCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCC
Q 012367 412 TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKN 453 (465)
Q Consensus 412 dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs 453 (465)
+|.|++|.+..-+.... ..+. .....+.+....|+++|.
T Consensus 281 ~G~i~i~SLP~Lkei~~-~~l~--~~~d~~~~~~ssis~~Gd 319 (395)
T PF08596_consen 281 NGSIRIYSLPSLKEIKS-VSLP--PPLDSRRLSSSSISRNGD 319 (395)
T ss_dssp TSEEEEEETTT--EEEE-EE-S--S---HHHHTT-EE-TTS-
T ss_pred CCcEEEEECCCchHhhc-ccCC--CccccccccccEECCCCC
Confidence 99999999987555433 2222 111223444555555543
No 332
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.011 Score=62.52 Aligned_cols=179 Identities=13% Similarity=0.177 Sum_probs=110.2
Q ss_pred ccchhhhccCCCcEEEEEECCCC-CEEEEEeCCCc-----EEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCc
Q 012367 212 LYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGV-----VRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH 285 (465)
Q Consensus 212 ~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~-----V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (465)
++..+.+++|...|...-+.-++ .+|++.++|+. |+||+++..+....
T Consensus 54 ~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s-------------------------- 107 (933)
T KOG2114|consen 54 FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS-------------------------- 107 (933)
T ss_pred ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC--------------------------
Confidence 33347788888884444444444 68999998875 89999876321100
Q ss_pred eeEecCCceeeecCCccee--eeccccceEEEEecCC-CEEEEEeCCCeEEEEeC--CCCe-EeEEe--cCCCceEEEEE
Q 012367 286 VPVVIPDEVFQIEESPLQE--LHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQV--GCNQ-CLNVF--DHHNYVTCVQF 357 (465)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~--~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~--~~~~-~l~~~--~h~~~V~~i~f 357 (465)
|.-++.. .+.+ ......++.+++.+.+ ..++.|-.+|.|..+.- ...+ ....+ ....+|+.+++
T Consensus 108 -----P~c~~~~---ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~ 179 (933)
T KOG2114|consen 108 -----PQCLYEH---RIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLAL 179 (933)
T ss_pred -----cceeeee---eeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEE
Confidence 0000000 0000 0113467788888876 68889999999998842 1111 11222 35569999999
Q ss_pred ccCCCCEEEEEeCCCcEEEEeCCCCe--EEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367 358 NPIDDNYFISGSIDGKVRIWGVCEKR--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK 426 (465)
Q Consensus 358 sp~~~~~l~sgs~Dg~I~iwd~~~~~--~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~ 426 (465)
.. ++.-++-......|.+|.+.... ......|...++|..+++....+++++. ..+.+|+..+.+.+
T Consensus 180 ~~-d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~c 248 (933)
T KOG2114|consen 180 RS-DGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPC 248 (933)
T ss_pred ec-CCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCccee
Confidence 88 66653333345679999987554 3335667778899998876655666554 46788888765553
No 333
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.07 E-value=0.0009 Score=70.27 Aligned_cols=106 Identities=12% Similarity=0.157 Sum_probs=83.3
Q ss_pred EEEecCC-CEEEEEeC----CCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-c
Q 012367 314 DLAWSNS-NYLLSCSM----DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-W 387 (465)
Q Consensus 314 ~l~~s~~-~~l~s~s~----DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~ 387 (465)
-+.|+|. .+++.++. .|.|.||- .+|.+.+....+-.++++||+| ..-.|+.|-.-|.+.+|...+.+..+ .
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~htv~ 97 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETHTVV 97 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccCh-HHHHHhhccccceeEEEecCCceeeeec
Confidence 3568886 46655543 47787773 4455554444445577899999 88889999999999999998877665 5
Q ss_pred ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367 388 ADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS 421 (465)
Q Consensus 388 ~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~ 421 (465)
..|...|..+.|+|+|..++++..-|.+.+|...
T Consensus 98 ~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 98 ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5689999999999999999999999999999876
No 334
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.02 E-value=0.18 Score=51.02 Aligned_cols=103 Identities=8% Similarity=0.028 Sum_probs=71.7
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEeccc-CC-CCeEEE
Q 012367 320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-VR-DVISAI 397 (465)
Q Consensus 320 ~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~-~~V~sv 397 (465)
++.++.++.++.+..+|+.+|+.+........ ..+.. .+..++.++.++.|..+|..+++.+-... .. ....+.
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~~---~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp 331 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGSV-NDFAV---DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAP 331 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCcEE---ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCC
Confidence 56788888899999999999988776643322 12222 45677778889999999999987654221 11 112222
Q ss_pred EEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367 398 CYIPDGKGFIVGSITGTCHFYKASGNDLKLE 428 (465)
Q Consensus 398 ~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~ 428 (465)
.. .+..|++++.+|.++++|..+++....
T Consensus 332 ~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~ 360 (394)
T PRK11138 332 VL--YNGYLVVGDSEGYLHWINREDGRFVAQ 360 (394)
T ss_pred EE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 22 255788999999999999999876543
No 335
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.90 E-value=0.0041 Score=64.44 Aligned_cols=103 Identities=12% Similarity=0.184 Sum_probs=80.3
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeEeEEec--CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeE-----Ee--ccc
Q 012367 319 NSNYLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV-----VD--WAD 389 (465)
Q Consensus 319 ~~~~l~s~s~DgtV~lWD~~~~~~l~~~~--h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~-----~~--~~~ 389 (465)
.+.+++.|+.-|.|.+|+-..+.....-. ....+..+..++ +..++|.|+..|.|.++-+..+.. ++ -..
T Consensus 44 t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~ 122 (726)
T KOG3621|consen 44 TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKS 122 (726)
T ss_pred CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCCCcceeecccccc
Confidence 34689999999999999987765443322 344555667788 888999999999999998865321 11 223
Q ss_pred CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367 390 VRDVISAICYIPDGKGFIVGSITGTCHFYKASG 422 (465)
Q Consensus 390 ~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~ 422 (465)
|...|++++|++++..+++|...|.|.+-.++.
T Consensus 123 ~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 123 HKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 788999999999999999999999999888776
No 336
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.72 E-value=0.077 Score=57.54 Aligned_cols=126 Identities=18% Similarity=0.269 Sum_probs=87.0
Q ss_pred Cceeee---cCCcceeeeccccc-eEEEEecC------CCEEEEEeCCCeEEEEeCCCCe--EeE----EecCCCceEEE
Q 012367 292 DEVFQI---EESPLQELHGHKGD-VLDLAWSN------SNYLLSCSMDKTVRMWQVGCNQ--CLN----VFDHHNYVTCV 355 (465)
Q Consensus 292 ~~~~~~---~~~~~~~~~gh~~~-V~~l~~s~------~~~l~s~s~DgtV~lWD~~~~~--~l~----~~~h~~~V~~i 355 (465)
..++.+ .++.+.++..|... |.+++-.. +...+.|-.+..+..||.+-.. ++. .+.......|+
T Consensus 504 ~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~ 583 (794)
T PF08553_consen 504 NKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCF 583 (794)
T ss_pred CceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEE
Confidence 445544 35667777777644 66665431 1256778888999999998532 332 22344567777
Q ss_pred EEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEe
Q 012367 356 QFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKA 420 (465)
Q Consensus 356 ~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~ 420 (465)
+-.. .-+||.|+.+|.||+||-...+.-+ +.+...+|..|+.+.||++|++.+.. .+.++++
T Consensus 584 aTt~--~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 584 ATTE--DGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred EecC--CceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 7764 5689999999999999964433333 55678999999999999998887655 5566665
No 337
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.71 E-value=0.071 Score=55.91 Aligned_cols=120 Identities=15% Similarity=0.118 Sum_probs=80.3
Q ss_pred cccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeE------------eEEecCCCceEEEEEccCCCCEEEEEeCCCc
Q 012367 308 HKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQC------------LNVFDHHNYVTCVQFNPIDDNYFISGSIDGK 373 (465)
Q Consensus 308 h~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~------------l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~ 373 (465)
-......+.++|++ .++++..+.+|.|.|+.+.+. .....-.......+|.+ +++.+.|-..|..
T Consensus 319 VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg-~G~aytslf~dsq 397 (635)
T PRK02888 319 VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDG-RGNAYTTLFLDSQ 397 (635)
T ss_pred CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECC-CCCEEEeEeecce
Confidence 34566788999987 455666699999999987542 33333444456788988 8888999999999
Q ss_pred EEEEeCCC----------CeEEecccCCCCeEEE------EEeeCCCEEEEEEc---CC----------cEEEEEecCCc
Q 012367 374 VRIWGVCE----------KRVVDWADVRDVISAI------CYIPDGKGFIVGSI---TG----------TCHFYKASGND 424 (465)
Q Consensus 374 I~iwd~~~----------~~~~~~~~~~~~V~sv------~~spdg~~l~sgs~---dG----------~v~iwd~~~~~ 424 (465)
|..|++.. ..++......-.+-.+ .-.|||++|++... |. +-.+.|+++.+
T Consensus 398 v~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidIsgdk 477 (635)
T PRK02888 398 IVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDISGDK 477 (635)
T ss_pred eEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccccccccccCCCCCCCCcceeEEccCCe
Confidence 99999865 3344422222222222 23789999988753 22 33577777776
Q ss_pred eeee
Q 012367 425 LKLE 428 (465)
Q Consensus 425 ~~~~ 428 (465)
+++.
T Consensus 478 M~lv 481 (635)
T PRK02888 478 MKLV 481 (635)
T ss_pred eEEE
Confidence 6554
No 338
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.61 E-value=0.26 Score=47.37 Aligned_cols=182 Identities=12% Similarity=0.133 Sum_probs=113.1
Q ss_pred EEEEECC-CCCEEEEEeCCCc-EEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcce
Q 012367 226 WTLKFSP-DGRYLASGGEDGV-VRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 303 (465)
Q Consensus 226 ~~l~fsp-dg~~LaSgs~Dg~-V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (465)
..++.+| .+..+|.+-.-|+ ..+||..++...... ...+-+
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~-------------------------------------~a~~gR 50 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRL-------------------------------------WAPPGR 50 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEE-------------------------------------cCCCCC
Confidence 3678888 5567777777665 567888776543322 123456
Q ss_pred eeeccccceEEEEecCCC-EEEEEeC-----CCeEEEEeCC-CCeEeEEec-CCCceEEEEEccCCCCEEEEEe------
Q 012367 304 ELHGHKGDVLDLAWSNSN-YLLSCSM-----DKTVRMWQVG-CNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS------ 369 (465)
Q Consensus 304 ~~~gh~~~V~~l~~s~~~-~l~s~s~-----DgtV~lWD~~-~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs------ 369 (465)
.|.|| -.|++++ +|++.-. .|.|-|||.. +-+.+..|. |.-....+.+.| ++..|+.+.
T Consensus 51 HFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Th 123 (305)
T PF07433_consen 51 HFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETH 123 (305)
T ss_pred EEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccC
Confidence 78888 5689987 5555433 4789999998 566777774 444556778899 887766652
Q ss_pred ------------CCCcEEEEeCCCCeEEe---c--ccCCCCeEEEEEeeCCCEEEEEEcCCc-------EEEEEecCCce
Q 012367 370 ------------IDGKVRIWGVCEKRVVD---W--ADVRDVISAICYIPDGKGFIVGSITGT-------CHFYKASGNDL 425 (465)
Q Consensus 370 ------------~Dg~I~iwd~~~~~~~~---~--~~~~~~V~sv~~spdg~~l~sgs~dG~-------v~iwd~~~~~~ 425 (465)
.+..+...|..++.++. + ..|...|..+++.++|..++..=..|- +-+++.... +
T Consensus 124 pd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~ 202 (305)
T PF07433_consen 124 PDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-L 202 (305)
T ss_pred cccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-c
Confidence 12345556777787765 3 347778999999999977666554442 223322221 2
Q ss_pred eeeEeeecCcc-cccCCceeeEEEeecCCc
Q 012367 426 KLEKVDFHDRK-KTSGNKITGIQGRISKNY 454 (465)
Q Consensus 426 ~~~~~~~~~~~-~~~~~~It~~~f~p~gs~ 454 (465)
.. +...... ..-.+.|-++.++.++..
T Consensus 203 ~~--~~~p~~~~~~l~~Y~gSIa~~~~g~~ 230 (305)
T PF07433_consen 203 RL--LPAPEEQWRRLNGYIGSIAADRDGRL 230 (305)
T ss_pred ee--ccCChHHHHhhCCceEEEEEeCCCCE
Confidence 11 1111111 122367888888877643
No 339
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.60 E-value=0.15 Score=50.14 Aligned_cols=110 Identities=16% Similarity=0.213 Sum_probs=75.8
Q ss_pred cccceEEEEecCCCEEEEEeCCCeEEEEeCCCCe-EeEEec--CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCC--CC
Q 012367 308 HKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ-CLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC--EK 382 (465)
Q Consensus 308 h~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~-~l~~~~--h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~--~~ 382 (465)
..++|.+++--. ++|+.+. .+.|.+|++...+ ....-. ....++++... +++++.|..-..|.++... ..
T Consensus 87 ~~g~V~ai~~~~-~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~~~~ 161 (321)
T PF03178_consen 87 VKGPVTAICSFN-GRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLRYDEENN 161 (321)
T ss_dssp ESS-EEEEEEET-TEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEEEETTTE
T ss_pred ecCcceEhhhhC-CEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEEEEccCC
Confidence 467899988764 4444443 4889999998777 544433 44477777764 5799999988888877443 33
Q ss_pred eEEe--cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367 383 RVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG 422 (465)
Q Consensus 383 ~~~~--~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~ 422 (465)
++.. .......++++.+-++++.++++..+|.+.++....
T Consensus 162 ~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 162 KLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp -EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 3333 233456789999997778999999999999998873
No 340
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.56 E-value=0.27 Score=49.81 Aligned_cols=185 Identities=10% Similarity=0.062 Sum_probs=99.9
Q ss_pred CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccc-cCCCeEEeccCCCCceeEecC---CceeeecCC-cceeeecc
Q 012367 234 GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN-AKEGKIKFGKKKSSHVPVVIP---DEVFQIEES-PLQELHGH 308 (465)
Q Consensus 234 g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~gh 308 (465)
+..++.++.+|.+..+|..+++............... .....+.+... ......... ..+|..... +.....+.
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~ 198 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTS-NGMLQALNESDGAVKWTVNLDVPSLTLRGE 198 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECC-CCEEEEEEccCCCEeeeecCCCCcccccCC
Confidence 4467778889999999998887766554332211111 11122222211 111111111 112222110 00001111
Q ss_pred ccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCc--------eEEEEEcc-CCCCEEEEEeCCCcEEEEeC
Q 012367 309 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY--------VTCVQFNP-IDDNYFISGSIDGKVRIWGV 379 (465)
Q Consensus 309 ~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~--------V~~i~fsp-~~~~~l~sgs~Dg~I~iwd~ 379 (465)
..++ .. ++.++.++.++.+..+|..+|+.+..+....+ ...+.-+| ..+..++.++.++.+..+|.
T Consensus 199 ~sP~----v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~ 273 (394)
T PRK11138 199 SAPA----TA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDL 273 (394)
T ss_pred CCCE----EE-CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEEC
Confidence 1111 11 35677788899999999999987766532111 11111122 13456667778999999999
Q ss_pred CCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceee
Q 012367 380 CEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL 427 (465)
Q Consensus 380 ~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~ 427 (465)
.+++.+....... ...+ ..++..+++++.+|.+..+|..+++...
T Consensus 274 ~tG~~~W~~~~~~-~~~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W 318 (394)
T PRK11138 274 RSGQIVWKREYGS-VNDF--AVDGGRIYLVDQNDRVYALDTRGGVELW 318 (394)
T ss_pred CCCCEEEeecCCC-ccCc--EEECCEEEEEcCCCeEEEEECCCCcEEE
Confidence 9998764332221 1122 2346688888899999999998887644
No 341
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.40 E-value=0.13 Score=47.52 Aligned_cols=106 Identities=11% Similarity=0.017 Sum_probs=82.3
Q ss_pred CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEE
Q 012367 321 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICY 399 (465)
Q Consensus 321 ~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~ 399 (465)
.+++.||..+.+.--|..+|..+..---...+.+-+.- -+++++.|+..|.+++.+..++.... +......=.....
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~ 101 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQC 101 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEE
Confidence 47888999999999999999988877666666665554 47889999999999999999996554 3333222233456
Q ss_pred eeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367 400 IPDGKGFIVGSITGTCHFYKASGNDLKLE 428 (465)
Q Consensus 400 spdg~~l~sgs~dG~v~iwd~~~~~~~~~ 428 (465)
.+++..+..|+.||+.+..|..+..-.++
T Consensus 102 d~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 102 DFDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred cCCCceEEEecCCCcEEEecccccceEEe
Confidence 78999999999999999999887665554
No 342
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.37 E-value=0.04 Score=59.71 Aligned_cols=123 Identities=16% Similarity=0.203 Sum_probs=82.9
Q ss_pred EEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEcc------CCCCEEEEEeCCCcEEEEeCCCC--eEEec----ccCCC
Q 012367 325 SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNP------IDDNYFISGSIDGKVRIWGVCEK--RVVDW----ADVRD 392 (465)
Q Consensus 325 s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp------~~~~~l~sgs~Dg~I~iwd~~~~--~~~~~----~~~~~ 392 (465)
.......|+-.|+..|+.+..+..+..+.-..|.| .+..-.+.|-.++.+..||.|-. +++.. .....
T Consensus 499 ~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 499 DPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred cCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence 33456789999999999999997444333334444 12334566777889999999753 34431 12445
Q ss_pred CeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCcc
Q 012367 393 VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNYD 455 (465)
Q Consensus 393 ~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~d 455 (465)
..+|++-+.+| +||+|+.+|.||+||--+ +. .......-+.+|+++..+.+|.|-
T Consensus 579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g-~~------AKT~lp~lG~pI~~iDvt~DGkwi 633 (794)
T PF08553_consen 579 NFSCFATTEDG-YIAVGSNKGDIRLYDRLG-KR------AKTALPGLGDPIIGIDVTADGKWI 633 (794)
T ss_pred CceEEEecCCc-eEEEEeCCCcEEeecccc-hh------hhhcCCCCCCCeeEEEecCCCcEE
Confidence 67788777777 899999999999999432 11 111111236899999999998873
No 343
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.30 E-value=0.21 Score=50.95 Aligned_cols=109 Identities=16% Similarity=0.194 Sum_probs=68.2
Q ss_pred EEEecCCC--EEEEEeCCCe--EEEEeCCCCeEeEEecCCC-ceEEEEEccCCCCEEEEEeC-CCc--EEEEeCCCCeEE
Q 012367 314 DLAWSNSN--YLLSCSMDKT--VRMWQVGCNQCLNVFDHHN-YVTCVQFNPIDDNYFISGSI-DGK--VRIWGVCEKRVV 385 (465)
Q Consensus 314 ~l~~s~~~--~l~s~s~Dgt--V~lWD~~~~~~l~~~~h~~-~V~~i~fsp~~~~~l~sgs~-Dg~--I~iwd~~~~~~~ 385 (465)
..+|+|++ ++++...|+. |.+.|+..+...+ +.+.. .-+.=.|+| +|++++-.+. .|. |.+.+...+...
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~~ 319 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQVT 319 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCcee
Confidence 45789986 5556677775 5666887766433 43332 223567899 8888776654 343 666677776654
Q ss_pred ecccCCCCeEEEEEeeCCCEEEEEEcC-Cc--EEEEEecCCc
Q 012367 386 DWADVRDVISAICYIPDGKGFIVGSIT-GT--CHFYKASGND 424 (465)
Q Consensus 386 ~~~~~~~~V~sv~~spdg~~l~sgs~d-G~--v~iwd~~~~~ 424 (465)
........-..-.|+|||+.|+..+.. |. |.++|+.++.
T Consensus 320 riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 320 RLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred EeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 433322222277899999998887753 44 5566665444
No 344
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.26 E-value=0.19 Score=52.74 Aligned_cols=94 Identities=13% Similarity=0.085 Sum_probs=73.6
Q ss_pred CCCeEEEEeCCC-----CeEeEEecCCCceEEEEEccCCCCEEEEEe-CCCcEEEEeCCCCe------------EEeccc
Q 012367 328 MDKTVRMWQVGC-----NQCLNVFDHHNYVTCVQFNPIDDNYFISGS-IDGKVRIWGVCEKR------------VVDWAD 389 (465)
Q Consensus 328 ~DgtV~lWD~~~-----~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs-~Dg~I~iwd~~~~~------------~~~~~~ 389 (465)
.+++|.+.|..+ ...+..+.-......+.++| |++++++++ .+.+|.|.|+.+.+ ++....
T Consensus 294 ~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 294 GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CCCEEEEEECCccccCCcceEEEEECCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 367899999998 46677777888889999999 888776654 58999999998744 233333
Q ss_pred CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367 390 VRDVISAICYIPDGKGFIVGSITGTCHFYKASG 422 (465)
Q Consensus 390 ~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~ 422 (465)
........+|.++|+...+-..|..|-.|++..
T Consensus 373 vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 373 LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 344556788999999888888899999999875
No 345
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.12 E-value=0.0066 Score=64.39 Aligned_cols=123 Identities=14% Similarity=0.122 Sum_probs=94.7
Q ss_pred CcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCC--cEE
Q 012367 300 SPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG--KVR 375 (465)
Q Consensus 300 ~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg--~I~ 375 (465)
++.+.+..|+...+|++|+.+ ++|+.|+..|.|+++++.+|...... .|...|+-+.-+. ++...++.+.-. -..
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchHH
Confidence 456677889999999999964 79999999999999999999887777 5999999999888 787777665443 467
Q ss_pred EEeCCC-CeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367 376 IWGVCE-KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK 426 (465)
Q Consensus 376 iwd~~~-~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~ 426 (465)
+|++.. +.... .-..-.++.|+..-+.-+.|+.-....+||+.++...
T Consensus 1171 LW~~~s~~~~~H---sf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1171 LWDASSTGGPRH---SFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred HhccccccCccc---cccccceeehhhhHHHHHhcccccceEEEecccCcHH
Confidence 999864 22221 1223467888877666777777778899999987653
No 346
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.10 E-value=0.35 Score=46.09 Aligned_cols=111 Identities=14% Similarity=0.194 Sum_probs=69.9
Q ss_pred ceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeE---------------EecCCCceEEEE-EccCCCCEEEEEeCCCc
Q 012367 311 DVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLN---------------VFDHHNYVTCVQ-FNPIDDNYFISGSIDGK 373 (465)
Q Consensus 311 ~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~---------------~~~h~~~V~~i~-fsp~~~~~l~sgs~Dg~ 373 (465)
.|..+...+. +.|+.- .|+++.++++..-.... .+.....+...+ -....+...+.....++
T Consensus 37 ~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~ 115 (275)
T PF00780_consen 37 SITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKK 115 (275)
T ss_pred eEEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCE
Confidence 3888888876 444443 45999999986543333 222333444444 11224444444555679
Q ss_pred EEEEeCCCC-----eEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 374 VRIWGVCEK-----RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 374 I~iwd~~~~-----~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
|.+|..... ....-......+.+++|. ++.+++|..++ ..+.|+.++..
T Consensus 116 i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~ 169 (275)
T PF00780_consen 116 ILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSP 169 (275)
T ss_pred EEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCc
Confidence 999887652 344445567889999999 55788887665 66888885544
No 347
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=1.1 Score=45.17 Aligned_cols=115 Identities=20% Similarity=0.207 Sum_probs=82.5
Q ss_pred ceEEEEecCCC-EEEEE-e--CCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEE-EeCCCcEEEEeCCCCeEE
Q 012367 311 DVLDLAWSNSN-YLLSC-S--MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS-GSIDGKVRIWGVCEKRVV 385 (465)
Q Consensus 311 ~V~~l~~s~~~-~l~s~-s--~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~s-gs~Dg~I~iwd~~~~~~~ 385 (465)
....+++++++ .+..+ . .+++|.+.|..++..+....-...-..+++.| ++..++. -..++.|.+.|..+..+.
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECC-CCCeEEEEecCCCeEEEEeCCCccee
Confidence 44578888875 44433 3 37999999999999888864433338999999 7775544 447899999998877666
Q ss_pred e-----cccCCCCeEEEEEeeCCCEEEEEEcC---CcEEEEEecCCcee
Q 012367 386 D-----WADVRDVISAICYIPDGKGFIVGSIT---GTCHFYKASGNDLK 426 (465)
Q Consensus 386 ~-----~~~~~~~V~sv~~spdg~~l~sgs~d---G~v~iwd~~~~~~~ 426 (465)
. ..........+.+.|+|..+.+.... +.+...|..++...
T Consensus 196 ~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~ 244 (381)
T COG3391 196 RGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVT 244 (381)
T ss_pred ccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEE
Confidence 3 23344556779999999977665554 58888888876654
No 348
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.06 E-value=0.022 Score=38.51 Aligned_cols=35 Identities=14% Similarity=0.308 Sum_probs=30.7
Q ss_pred cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367 389 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN 423 (465)
Q Consensus 389 ~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~ 423 (465)
.....|..++|+|....||.|+.+|.|.+|.++..
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCc
Confidence 34567999999999999999999999999998543
No 349
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.01 E-value=1.7 Score=44.34 Aligned_cols=32 Identities=19% Similarity=0.141 Sum_probs=27.8
Q ss_pred CCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367 392 DVISAICYIPDGKGFIVGSITGTCHFYKASGN 423 (465)
Q Consensus 392 ~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~ 423 (465)
+.+..++.||+|+++|.-+.+|.+.+...+-.
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence 57999999999999999999999988876543
No 350
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.90 E-value=0.021 Score=59.31 Aligned_cols=104 Identities=11% Similarity=0.128 Sum_probs=77.4
Q ss_pred CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEeccc--CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD--VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 348 h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~--~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
++..|.--++.. .+.|++.|+.-|.+++|+..++....... ....+...+.+++..++|+|+..|.|.+|-+.. .+
T Consensus 32 ~~~~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~-~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK-EL 109 (726)
T ss_pred CcceEEEEEeec-CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhc-cC
Confidence 444444444555 78999999999999999998877665433 566777888999999999999999999999887 34
Q ss_pred eeeEeeecCcccccCCceeeEEEeecCC
Q 012367 426 KLEKVDFHDRKKTSGNKITGIQGRISKN 453 (465)
Q Consensus 426 ~~~~~~~~~~~~~~~~~It~~~f~p~gs 453 (465)
+...+-+..--+++...||.+.|++++.
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~~~~ 137 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSKNGM 137 (726)
T ss_pred CCcceeeccccccCCceEEEEEeccccc
Confidence 4443322222344778999999999863
No 351
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.86 E-value=0.026 Score=61.34 Aligned_cols=98 Identities=16% Similarity=0.257 Sum_probs=73.3
Q ss_pred CEEEEEeCCCeEEEEeCCCCeE--eEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCC---e
Q 012367 321 NYLLSCSMDKTVRMWQVGCNQC--LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDV---I 394 (465)
Q Consensus 321 ~~l~s~s~DgtV~lWD~~~~~~--l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~---V 394 (465)
..++.|+..|.|...|+...-+ .+-.....+|++++|+. ++.+++.|-.+|.|.+||+..+++.+ +..+..+ |
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 4688888889999999876422 12223567999999999 99999999999999999999987766 4444444 4
Q ss_pred EEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367 395 SAICYIPDGKGFIVGSITGTCHFYKAS 421 (465)
Q Consensus 395 ~sv~~spdg~~l~sgs~dG~v~iwd~~ 421 (465)
..+.+..++..++++...|. +|.+.
T Consensus 179 i~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 44455566777888887886 67765
No 352
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.83 E-value=0.031 Score=37.80 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=28.5
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEecC
Q 012367 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVT 252 (465)
Q Consensus 222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~ 252 (465)
...|.+++|+|...+||.|..||.|.|+.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999984
No 353
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.68 E-value=0.71 Score=47.04 Aligned_cols=119 Identities=16% Similarity=0.204 Sum_probs=78.4
Q ss_pred CCcceeeeccccceEEEEecCCC--------EEEEEeCCCeEEEEeCCCCe--EeEEec-----CCCceEEEEEccCCCC
Q 012367 299 ESPLQELHGHKGDVLDLAWSNSN--------YLLSCSMDKTVRMWQVGCNQ--CLNVFD-----HHNYVTCVQFNPIDDN 363 (465)
Q Consensus 299 ~~~~~~~~gh~~~V~~l~~s~~~--------~l~s~s~DgtV~lWD~~~~~--~l~~~~-----h~~~V~~i~fsp~~~~ 363 (465)
++.+.++.-|.. |.-+.+.|+. .-+.|-.|..|.-||.+-.. .+..-+ ......|.+-. ..-
T Consensus 366 GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT--~sG 442 (644)
T KOG2395|consen 366 GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT--ESG 442 (644)
T ss_pred ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeec--CCc
Confidence 445555555544 6667777653 23456678889999987322 222222 22334455443 566
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367 364 YFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS 421 (465)
Q Consensus 364 ~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~ 421 (465)
+++.||.+|.||+||....+.-+ +.+...+|..|..+.||++|++.+. ..+.+-++.
T Consensus 443 ~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t~ 500 (644)
T KOG2395|consen 443 YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYLLLIDTL 500 (644)
T ss_pred eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEEEEEEEe
Confidence 89999999999999974433333 6778899999999999999877654 455566654
No 354
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.64 E-value=3 Score=42.47 Aligned_cols=55 Identities=5% Similarity=0.070 Sum_probs=39.6
Q ss_pred CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEec--ccCCCCeEEEEEeeCC
Q 012367 348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW--ADVRDVISAICYIPDG 403 (465)
Q Consensus 348 h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~--~~~~~~V~sv~~spdg 403 (465)
..+++..++++| +++++|.-..+|.+.|....-.+.... .+.......+.|.-+.
T Consensus 215 ~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 215 SDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred CCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 346899999999 999999999999999987655544432 2223556677776553
No 355
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.63 E-value=0.19 Score=55.35 Aligned_cols=136 Identities=15% Similarity=0.125 Sum_probs=89.3
Q ss_pred ceEEEEecCCC---EEEEEeCCCeEEEEeCCCCeE--------eEE----ecCCCceEEEEEccCCCCEEEEEeCCCcEE
Q 012367 311 DVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQC--------LNV----FDHHNYVTCVQFNPIDDNYFISGSIDGKVR 375 (465)
Q Consensus 311 ~V~~l~~s~~~---~l~s~s~DgtV~lWD~~~~~~--------l~~----~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~ 375 (465)
.|..+...+|. .++..+.+-.|..||+++-.. ++. +.....+.++.|+|.-....+....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 34444444543 455556666899999865321 111 123446789999996677788888899999
Q ss_pred EEeCCCC-eEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEee
Q 012367 376 IWGVCEK-RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRI 450 (465)
Q Consensus 376 iwd~~~~-~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p 450 (465)
+..+... ..+........+++++|+|.|+.+++|-..|++.-|....... ...++.......+|.++.|..
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik----~~ip~Pp~~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK----SEIPEPPVEENYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccccee----ecccCCCcCCCcceeEEEEec
Confidence 9887543 3333456778899999999999999999999999887653211 111222222246777877663
No 356
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.45 E-value=0.25 Score=50.41 Aligned_cols=118 Identities=17% Similarity=0.259 Sum_probs=77.7
Q ss_pred cccceEEEEecCCC-EE--EEE-eCC-CeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEE-EeCCCc--EEEEeC
Q 012367 308 HKGDVLDLAWSNSN-YL--LSC-SMD-KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS-GSIDGK--VRIWGV 379 (465)
Q Consensus 308 h~~~V~~l~~s~~~-~l--~s~-s~D-gtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~s-gs~Dg~--I~iwd~ 379 (465)
-...+..-+|+|++ .+ ++- ... ..+.++|+.+++..........-..-+|+| +++.++- ...||. |.+.|+
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fsp-DG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSP-DGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCC-CCCEEEEEECCCCCccEEEEcC
Confidence 33456667788875 21 122 222 469999999988766666555556779999 7766654 445664 666788
Q ss_pred CCCeEEecccCCCCeEEEEEeeCCCEEEEEEc-CCc--EEEEEecCCcee
Q 012367 380 CEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TGT--CHFYKASGNDLK 426 (465)
Q Consensus 380 ~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~-dG~--v~iwd~~~~~~~ 426 (465)
.++....+....+.-+.-.|+|||+.++-.+. .|. |.++++.++...
T Consensus 270 ~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ 319 (425)
T COG0823 270 DGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT 319 (425)
T ss_pred CCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee
Confidence 88776665555555557889999998877765 454 555566665543
No 357
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.41 E-value=0.96 Score=42.53 Aligned_cols=147 Identities=12% Similarity=0.191 Sum_probs=86.2
Q ss_pred eeeccccceEEEEecCC-C-EEEEEeCCCeEEEEeCCCCeEeEEec--CCCceEEEEEccCCCCEEEEEeCCCcEEEEeC
Q 012367 304 ELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379 (465)
Q Consensus 304 ~~~gh~~~V~~l~~s~~-~-~l~s~s~DgtV~lWD~~~~~~l~~~~--h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~ 379 (465)
.+.+-...+..|+|+|+ + +++.....+.|...+. +|+.++.+. ..+....|++.. ++.|+++--.++.+.++++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEE
Confidence 44566667999999986 5 5556667788888887 478888874 335678899876 7777776656899999988
Q ss_pred CCC--e--E-----Ee--cc-cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC--CceeeeEeeecC--cccccCCce
Q 012367 380 CEK--R--V-----VD--WA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASG--NDLKLEKVDFHD--RKKTSGNKI 443 (465)
Q Consensus 380 ~~~--~--~-----~~--~~-~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~--~~~~~~~~~~~~--~~~~~~~~I 443 (465)
... . . +. +. .++..+-.++|.|.++.|+++-...-..+|.+.. ....+....... ........+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 321 1 1 11 11 2445689999999999988888887888888875 222222111111 122344678
Q ss_pred eeEEEeecC
Q 012367 444 TGIQGRISK 452 (465)
Q Consensus 444 t~~~f~p~g 452 (465)
.++.+.|..
T Consensus 174 S~l~~~p~t 182 (248)
T PF06977_consen 174 SGLSYDPRT 182 (248)
T ss_dssp -EEEEETTT
T ss_pred cceEEcCCC
Confidence 888888763
No 358
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.25 E-value=2.4 Score=42.78 Aligned_cols=156 Identities=16% Similarity=0.175 Sum_probs=105.5
Q ss_pred cEEEEEECCCCCEEEEEeC---CCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367 224 CIWTLKFSPDGRYLASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (465)
Q Consensus 224 ~I~~l~fspdg~~LaSgs~---Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (465)
.-..++++|+++.+..+.. +++|.+.|-.+........
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~--------------------------------------- 157 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP--------------------------------------- 157 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe---------------------------------------
Confidence 3457899999987666655 5777777766543322110
Q ss_pred cceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeE-----EecCCCceEEEEEccCCCCEEEEEeCC--
Q 012367 301 PLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLN-----VFDHHNYVTCVQFNPIDDNYFISGSID-- 371 (465)
Q Consensus 301 ~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~-----~~~h~~~V~~i~fsp~~~~~l~sgs~D-- 371 (465)
.|- .+ ..+++.|++ .+++-..+++|.+.|.......+ ...-......+.++| ++.++......
T Consensus 158 -----vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~-~g~~~yV~~~~~~ 229 (381)
T COG3391 158 -----VGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDP-DGNRVYVANDGSG 229 (381)
T ss_pred -----cCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECC-CCCEEEEEeccCC
Confidence 011 22 678899876 34444578999999987766653 123334556788999 88766555443
Q ss_pred -CcEEEEeCCCCeEEecc-cCCC-CeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCcee
Q 012367 372 -GKVRIWGVCEKRVVDWA-DVRD-VISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLK 426 (465)
Q Consensus 372 -g~I~iwd~~~~~~~~~~-~~~~-~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~~ 426 (465)
+.+.+.|..++.+.... .... ....+..+|+|+.+.+... .+.+.+.|..+..+.
T Consensus 230 ~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~ 288 (381)
T COG3391 230 SNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVV 288 (381)
T ss_pred CceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCcee
Confidence 58999999998877642 2222 5778999999999988855 488888888876554
No 359
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.12 E-value=0.28 Score=49.86 Aligned_cols=134 Identities=14% Similarity=0.207 Sum_probs=89.4
Q ss_pred EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCC-------EEEEEeCCCcEEEEeCCCCe--EEecc----
Q 012367 322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDN-------YFISGSIDGKVRIWGVCEKR--VVDWA---- 388 (465)
Q Consensus 322 ~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~-------~l~sgs~Dg~I~iwd~~~~~--~~~~~---- 388 (465)
+|.++..-..++-.|+..|+.+........|+-+.+.| +.. --+.|-.|..|.-||.+-.. .+.+.
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccC-CcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 45566666778888999999999998666688888888 432 22446668889999987422 22222
Q ss_pred -cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc-----cc-eeeee
Q 012367 389 -DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY-----DN-FRRFQ 461 (465)
Q Consensus 389 -~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~-----d~-~~~~~ 461 (465)
.......|++-..+| ++++|+.+|.|++||-....- +..++ .-+..|+.+..+.+|.+ ++ +.+..
T Consensus 427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~A---KTAlP----gLG~~I~hVdvtadGKwil~Tc~tyLlLi~ 498 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRA---KTALP----GLGDAIKHVDVTADGKWILATCKTYLLLID 498 (644)
T ss_pred cccccccceeeecCCc-eEEEeecCCcEEeehhhhhhh---hhccc----ccCCceeeEEeeccCcEEEEecccEEEEEE
Confidence 123445666666666 899999999999999733211 11111 13578999998888765 33 45555
Q ss_pred cCC
Q 012367 462 TPY 464 (465)
Q Consensus 462 ~p~ 464 (465)
+++
T Consensus 499 t~~ 501 (644)
T KOG2395|consen 499 TLI 501 (644)
T ss_pred Eec
Confidence 654
No 360
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.08 E-value=1.8 Score=40.28 Aligned_cols=99 Identities=12% Similarity=0.059 Sum_probs=68.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEE-EEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCC-CeEE
Q 012367 319 NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCV-QFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRD-VISA 396 (465)
Q Consensus 319 ~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i-~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~V~s 396 (465)
-+++++.|...|.+++.+..+|.....|...+.|.+- +..+ ++..+..|+.|+..+..|.++...+......+ ...+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~-~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~s 140 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVS 140 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcC-CCceEEEecCCCcEEEecccccceEEecccCCceecc
Confidence 3567999999999999999999888888765555443 3445 89999999999999999999877665333222 2333
Q ss_pred EEEeeCCCEEEEEEcCCcEEEE
Q 012367 397 ICYIPDGKGFIVGSITGTCHFY 418 (465)
Q Consensus 397 v~~spdg~~l~sgs~dG~v~iw 418 (465)
-+..|-...|.++...|.+.--
T Consensus 141 P~i~~g~~sly~a~t~G~vlav 162 (354)
T KOG4649|consen 141 PVIAPGDGSLYAAITAGAVLAV 162 (354)
T ss_pred ceecCCCceEEEEeccceEEEE
Confidence 4555533344555555554433
No 361
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.06 E-value=0.064 Score=48.70 Aligned_cols=102 Identities=11% Similarity=0.106 Sum_probs=68.7
Q ss_pred CEEEEEeCCCeEEEEeCCCCe-EeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEeccc-CC-CCeEE
Q 012367 321 NYLLSCSMDKTVRMWQVGCNQ-CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-VR-DVISA 396 (465)
Q Consensus 321 ~~l~s~s~DgtV~lWD~~~~~-~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~-~~V~s 396 (465)
..++.|+.+|.|.+|...... ....+ .....|.+..-.-.++.+..+++.||.||.|++.-.+.+...+ |. ..+..
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~ 150 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEE 150 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcce
Confidence 479999999999999886211 11111 1222333333222255689999999999999998888776544 44 45666
Q ss_pred EEEeeCCCEEEEE--EcCCcEEEEEecC
Q 012367 397 ICYIPDGKGFIVG--SITGTCHFYKASG 422 (465)
Q Consensus 397 v~~spdg~~l~sg--s~dG~v~iwd~~~ 422 (465)
+..+..++.++.+ |.|..++.|++..
T Consensus 151 ~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 151 LIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eEEecCCceEEeeccccchhhhhcchhh
Confidence 6666667777777 7788888888763
No 362
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.05 E-value=0.78 Score=44.97 Aligned_cols=115 Identities=9% Similarity=0.073 Sum_probs=71.5
Q ss_pred CeEEEEeCCCC-----e--EeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe-EEecccCCCCeEEEEEee
Q 012367 330 KTVRMWQVGCN-----Q--CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR-VVDWADVRDVISAICYIP 401 (465)
Q Consensus 330 gtV~lWD~~~~-----~--~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~-~~~~~~~~~~V~sv~~sp 401 (465)
|.|.++++... + .+......++|++++-. .+. ++.+. ++.|.+|++.... +.....+...+..++...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 88999999884 2 23334578899999875 344 44444 5899999998777 665444333334444444
Q ss_pred CCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC
Q 012367 402 DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK 452 (465)
Q Consensus 402 dg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g 452 (465)
.+.++++|.....+.++..+.....+..+.-.. ....++++.|.+++
T Consensus 138 ~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~----~~~~v~~~~~l~d~ 184 (321)
T PF03178_consen 138 FKNYILVGDAMKSVSLLRYDEENNKLILVARDY----QPRWVTAAEFLVDE 184 (321)
T ss_dssp ETTEEEEEESSSSEEEEEEETTTE-EEEEEEES----S-BEEEEEEEE-SS
T ss_pred cccEEEEEEcccCEEEEEEEccCCEEEEEEecC----CCccEEEEEEecCC
Confidence 467999999999999887765433333322111 23567777777655
No 363
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.05 E-value=0.8 Score=45.89 Aligned_cols=98 Identities=13% Similarity=0.105 Sum_probs=58.5
Q ss_pred ceEEEEecCCCEEEEEeCCCeEEEEeCCCC-----e---EeEEec-----CCCceEEEEEccCCCCEEEEEeCC------
Q 012367 311 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCN-----Q---CLNVFD-----HHNYVTCVQFNPIDDNYFISGSID------ 371 (465)
Q Consensus 311 ~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~-----~---~l~~~~-----h~~~V~~i~fsp~~~~~l~sgs~D------ 371 (465)
....|++.+++ |+.+......++.|.... + .+..+. +......++|.| ++.+.++-+..
T Consensus 73 ~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 73 MVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVT 150 (367)
T ss_pred CccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceec
Confidence 45678888888 555555554445565321 1 122232 234578899999 88876655521
Q ss_pred -------------CcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEE
Q 012367 372 -------------GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS 410 (465)
Q Consensus 372 -------------g~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs 410 (465)
+.|.-++..++....+.........++|+|+|+.+++-.
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 345555655555444333344567899999998877644
No 364
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.95 E-value=0.89 Score=48.47 Aligned_cols=105 Identities=10% Similarity=0.071 Sum_probs=60.7
Q ss_pred eEEEEecCC-CEEEEEeC------------CCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEE--
Q 012367 312 VLDLAWSNS-NYLLSCSM------------DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI-- 376 (465)
Q Consensus 312 V~~l~~s~~-~~l~s~s~------------DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~i-- 376 (465)
...-.|+|+ +.|.+.+. .+.+.+.++..+.... .....|..+.|+| ||..++... ++.|.+
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~ 474 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSR-DGVRAAMII-GGKVYLAV 474 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEE
Confidence 455677776 34444432 2233333444433322 3356799999999 999887766 577776
Q ss_pred -EeCCCCe--E---Eec-ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367 377 -WGVCEKR--V---VDW-ADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS 421 (465)
Q Consensus 377 -wd~~~~~--~---~~~-~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~ 421 (465)
-....+. + ..+ ......+.++.|.+++.. +++..++.-.+|.+.
T Consensus 475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L-~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSL-VVGRSDPEHPVWYVN 525 (591)
T ss_pred EEeCCCCceeecccEEeecccCCccccceEecCCEE-EEEecCCCCceEEEe
Confidence 3333443 1 111 223344688999999985 466665555555543
No 365
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.90 E-value=0.72 Score=51.34 Aligned_cols=142 Identities=15% Similarity=0.171 Sum_probs=91.3
Q ss_pred cceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeC----CC---
Q 012367 310 GDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV----CE--- 381 (465)
Q Consensus 310 ~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~----~~--- 381 (465)
+.|.++.|..+ +.++.+..+|.|.+-|..+....-.-...+.|.+++|+| |+..++....++++.+-+- -.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSP-DEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccchhccc
Confidence 68889998865 577888888999999888775544445677899999999 9999988888787776432 11
Q ss_pred --------CeEEe---------ccc---------------------CCCCeEEEEEeeCCCEEEEEE-----cCCcEEEE
Q 012367 382 --------KRVVD---------WAD---------------------VRDVISAICYIPDGKGFIVGS-----ITGTCHFY 418 (465)
Q Consensus 382 --------~~~~~---------~~~---------------------~~~~V~sv~~spdg~~l~sgs-----~dG~v~iw 418 (465)
++.+. +.+ ..+.=++|+|--||+++++.. ....|++|
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 11110 110 111234599999999999843 33789999
Q ss_pred EecCCceeee---EeeecC--cccccCCceeeEEEeecCC
Q 012367 419 KASGNDLKLE---KVDFHD--RKKTSGNKITGIQGRISKN 453 (465)
Q Consensus 419 d~~~~~~~~~---~~~~~~--~~~~~~~~It~~~f~p~gs 453 (465)
|.. +.+... ....+. .-+.++..|..+|-.++.+
T Consensus 228 drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~ 266 (1265)
T KOG1920|consen 228 DRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDS 266 (1265)
T ss_pred ccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCC
Confidence 987 333221 111111 1122456677777666554
No 366
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.88 E-value=1.7 Score=46.73 Aligned_cols=109 Identities=12% Similarity=0.160 Sum_probs=78.0
Q ss_pred ceEEEEecC---CCEEEEEeCCCeEEEEeCCC-------C-------------eEeEEecCCCceEEEEEc--cCCCCEE
Q 012367 311 DVLDLAWSN---SNYLLSCSMDKTVRMWQVGC-------N-------------QCLNVFDHHNYVTCVQFN--PIDDNYF 365 (465)
Q Consensus 311 ~V~~l~~s~---~~~l~s~s~DgtV~lWD~~~-------~-------------~~l~~~~h~~~V~~i~fs--p~~~~~l 365 (465)
.|+-|.... ...|+.|..||.|.+|.+++ . ++...+.....++.++++ . ..++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~-~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK-KSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC-cceEE
Confidence 455555443 34899999999999996521 0 122334566789999998 6 78899
Q ss_pred EEEeCCCcEEEEeCCC--CeEEe--cccCCCCeEEEEEeeCC---C---EEEEEEcCCcEEEEEe
Q 012367 366 ISGSIDGKVRIWGVCE--KRVVD--WADVRDVISAICYIPDG---K---GFIVGSITGTCHFYKA 420 (465)
Q Consensus 366 ~sgs~Dg~I~iwd~~~--~~~~~--~~~~~~~V~sv~~spdg---~---~l~sgs~dG~v~iwd~ 420 (465)
|+++....|.||-+.. .+... ...+...|.+|+|-++. . .+++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 9999888888886643 22221 23467789999998754 2 6788889999999888
No 367
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.67 E-value=0.14 Score=46.56 Aligned_cols=55 Identities=18% Similarity=0.228 Sum_probs=34.7
Q ss_pred CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe
Q 012367 321 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR 383 (465)
Q Consensus 321 ~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~ 383 (465)
.+..++..|+.|+.|++.-++.+....++.. - ++..+++.+.|+.|.+|++....
T Consensus 115 ~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~------~--~~e~~ivv~sd~~i~~a~~S~d~ 169 (238)
T KOG2444|consen 115 SLGCVGAQDGRIRACNIKPNKVLGYVGQHNF------E--SGEELIVVGSDEFLKIADTSHDR 169 (238)
T ss_pred ceeEEeccCCceeeeccccCceeeeeccccC------C--CcceeEEecCCceEEeeccccch
Confidence 3788999999999999988877766643321 2 23344444445555555554443
No 368
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.48 E-value=1.6 Score=45.63 Aligned_cols=102 Identities=9% Similarity=0.029 Sum_probs=66.8
Q ss_pred EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEE------------------eCCCcEEEEeCCCCe
Q 012367 322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG------------------SIDGKVRIWGVCEKR 383 (465)
Q Consensus 322 ~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sg------------------s~Dg~I~iwd~~~~~ 383 (465)
.++.++.+|.+...|..+|+.+..+.... ..++..| ..++.+ ..+|.|.-.|+.+++
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~--~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~ 377 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEVE--QPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK 377 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEeec--cccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence 57788889999999999999888764321 1123333 222221 235788888998888
Q ss_pred EEecccCC---------CCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367 384 VVDWADVR---------DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 428 (465)
Q Consensus 384 ~~~~~~~~---------~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~ 428 (465)
.+-..... .....-.....+..|++|+.||.++.+|..++++...
T Consensus 378 ~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~ 431 (488)
T cd00216 378 VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWK 431 (488)
T ss_pred EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeE
Confidence 76533322 1111111122567899999999999999999987655
No 369
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.40 E-value=0.65 Score=43.77 Aligned_cols=69 Identities=26% Similarity=0.349 Sum_probs=48.2
Q ss_pred CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEE
Q 012367 348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYK 419 (465)
Q Consensus 348 h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd 419 (465)
..++|-+|+.+..++-..+|.-..+...+||..++.++......+ +.-.-+....+++.+.+|.|.+|.
T Consensus 278 ~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d---aaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 278 FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD---AAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc---cccceeccCceEEecCCceEEecc
Confidence 346788899887455555666667778899999999887544332 112334556788889999999884
No 370
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.40 E-value=0.16 Score=50.58 Aligned_cols=90 Identities=12% Similarity=0.148 Sum_probs=62.8
Q ss_pred CCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccC------------------
Q 012367 329 DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV------------------ 390 (465)
Q Consensus 329 DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~------------------ 390 (465)
.+.+.|||+.+++..........+....|+| ++++++-.. ++.|.+++..++....+...
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv 99 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV 99 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred ceeEEEEecCCCceEECcCCccccccceeec-CCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence 3679999999987665554567889999999 899998886 68899999988766543221
Q ss_pred CCCeEEEEEeeCCCEEEEEEcC-CcEEEEEe
Q 012367 391 RDVISAICYIPDGKGFIVGSIT-GTCHFYKA 420 (465)
Q Consensus 391 ~~~V~sv~~spdg~~l~sgs~d-G~v~iwd~ 420 (465)
-+.-.++-|+|||+.|+....| ..|..+.+
T Consensus 100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~ 130 (353)
T PF00930_consen 100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPL 130 (353)
T ss_dssp SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred cccccceEECCCCCEEEEEEECCcCCceEEe
Confidence 1224678899999998887653 44444443
No 371
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.21 E-value=5.8 Score=38.48 Aligned_cols=148 Identities=15% Similarity=0.268 Sum_probs=79.4
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCc
Q 012367 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 301 (465)
Q Consensus 222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (465)
.+.|..+.-+++|+++|.++.-....-|+-....-
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w--------------------------------------------- 178 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTW--------------------------------------------- 178 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----------------------------------------------
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCccc---------------------------------------------
Confidence 47789999999999998887766666776442100
Q ss_pred ceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeC-CCCeEeEE--e--cCCC-ceEEEEEccCCCCEEEEEeCCCcEE
Q 012367 302 LQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQV-GCNQCLNV--F--DHHN-YVTCVQFNPIDDNYFISGSIDGKVR 375 (465)
Q Consensus 302 ~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~-~~~~~l~~--~--~h~~-~V~~i~fsp~~~~~l~sgs~Dg~I~ 375 (465)
...-..-...|..|.|.|++.|......|.|+.=+. ........ . .... .+..++|.+ +....++|+ .|.+.
T Consensus 179 ~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg-~G~l~ 256 (302)
T PF14870_consen 179 QPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP-PNEIWAVGG-SGTLL 256 (302)
T ss_dssp EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS-SS-EEEEES-TT-EE
T ss_pred eEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecC-CCCEEEEeC-CccEE
Confidence 000112346789999999886666668899988872 22222111 1 1223 489999998 777777776 45443
Q ss_pred EEeCCCCeEEe----cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEE
Q 012367 376 IWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSITGTCHFY 418 (465)
Q Consensus 376 iwd~~~~~~~~----~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iw 418 (465)
+ ....++--. .......+..|.|.++.+.++.| .+|.+--|
T Consensus 257 ~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 257 V-STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp E-ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred E-eCCCCccceECccccCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 3 334443222 22345678899998877777665 67776544
No 372
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=93.90 E-value=2.5 Score=40.18 Aligned_cols=120 Identities=13% Similarity=0.104 Sum_probs=73.4
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-------------
Q 012367 320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD------------- 386 (465)
Q Consensus 320 ~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~------------- 386 (465)
++.|+.|..+| +.++++..........+...|..+...| +-+.+++-+ |+.++++++..-....
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~ 83 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSL 83 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhccccccccccccccccc
Confidence 45788888888 9999994444444444444599999999 777777665 6999999986533222
Q ss_pred --cccCCCCeEEEE--EeeCCCEEEEEEcCCcEEEEEecCCce----eeeEeeecCcccccCCceeeEEEe
Q 012367 387 --WADVRDVISAIC--YIPDGKGFIVGSITGTCHFYKASGNDL----KLEKVDFHDRKKTSGNKITGIQGR 449 (465)
Q Consensus 387 --~~~~~~~V~sv~--~spdg~~l~sgs~dG~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~It~~~f~ 449 (465)
.......+..++ -.+.+...++.....+|.+|....... ...++.+.. .+.+++|.
T Consensus 84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~-------~~~~i~~~ 147 (275)
T PF00780_consen 84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPD-------PPSSIAFL 147 (275)
T ss_pred cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCC-------CcEEEEEe
Confidence 112233455555 122333444444555999999887422 333444443 56666665
No 373
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.89 E-value=1.3 Score=45.54 Aligned_cols=110 Identities=12% Similarity=0.222 Sum_probs=61.6
Q ss_pred ceEEEEecCCCEEEEEeCCCeEEEEeCCCC-----------eEeEEec-CCCceEEEEEccCCCCEEEEEeCCCcEEEEe
Q 012367 311 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCN-----------QCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 378 (465)
Q Consensus 311 ~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~-----------~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd 378 (465)
+|..+.|++++.+++-..+.++.+++.... .....+. ....|.+.+|.- + .|+-.... .|+-
T Consensus 146 ~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~-d--~fiYtT~~-~lkY-- 219 (443)
T PF04053_consen 146 AVKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVE-D--CFIYTTSN-HLKY-- 219 (443)
T ss_dssp E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEET-T--EEEEE-TT-EEEE--
T ss_pred CCcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEc-C--EEEEEcCC-eEEE--
Confidence 488999999864443334557778775433 0222332 367889999964 3 44433333 6665
Q ss_pred CCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367 379 VCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK 426 (465)
Q Consensus 379 ~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~ 426 (465)
+..|....+.....++.-+.+.|..+.+.....++.|..+.+....+.
T Consensus 220 l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~~~ 267 (443)
T PF04053_consen 220 LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLSELE 267 (443)
T ss_dssp EETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--HHHHH
T ss_pred EEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECHHHHH
Confidence 667777666666778888899998889999999999999987754443
No 374
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.81 E-value=1.9 Score=44.67 Aligned_cols=114 Identities=18% Similarity=0.252 Sum_probs=72.6
Q ss_pred ccccceEEEEecCC-----CEEEEEeCCCeEEEEeCC-----CCeEeEEe----cCCCc--eEEEEEccCCCCEEEEEeC
Q 012367 307 GHKGDVLDLAWSNS-----NYLLSCSMDKTVRMWQVG-----CNQCLNVF----DHHNY--VTCVQFNPIDDNYFISGSI 370 (465)
Q Consensus 307 gh~~~V~~l~~s~~-----~~l~s~s~DgtV~lWD~~-----~~~~l~~~----~h~~~--V~~i~fsp~~~~~l~sgs~ 370 (465)
|.-..|..+.|.|- .-|++.-..+.|.||.+. +++.+... ...-+ -..+.|+| ....|+.-..
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~ 132 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTA 132 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEec
Confidence 44567889999973 267788888999999984 22222221 11222 24567999 7777766554
Q ss_pred CCcEEEEeCC--CCeEEecccCCCCeEEEEEeeCCCEEEEEEcC-CcEEEEEec
Q 012367 371 DGKVRIWGVC--EKRVVDWADVRDVISAICYIPDGKGFIVGSIT-GTCHFYKAS 421 (465)
Q Consensus 371 Dg~I~iwd~~--~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~d-G~v~iwd~~ 421 (465)
...=.+++++ +.++..-....+-|.|.||.+||+.|+++-.. =.-++||-.
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 4444555654 33444444677889999999999988776443 223567644
No 375
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.61 E-value=4.6 Score=40.98 Aligned_cols=111 Identities=14% Similarity=0.150 Sum_probs=66.9
Q ss_pred ceEEEEecCCC-EEE-EEeCCC----eEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCC-----------
Q 012367 311 DVLDLAWSNSN-YLL-SCSMDK----TVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG----------- 372 (465)
Q Consensus 311 ~V~~l~~s~~~-~l~-s~s~Dg----tV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg----------- 372 (465)
.+..+.++|++ +++ +.+..| +|+++|+.+++.+... ... .-..+.|.+ +++.|+-...+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECT-TSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeC-CCCEEEEEEeCcccccccCCCCc
Confidence 34467788876 443 434444 5999999999876543 222 123399999 766665554433
Q ss_pred cEEEEeCCCCe---EEeccc-CCC-CeEEEEEeeCCCEEEEEEcC----CcEEEEEecCC
Q 012367 373 KVRIWGVCEKR---VVDWAD-VRD-VISAICYIPDGKGFIVGSIT----GTCHFYKASGN 423 (465)
Q Consensus 373 ~I~iwd~~~~~---~~~~~~-~~~-~V~sv~~spdg~~l~sgs~d----G~v~iwd~~~~ 423 (465)
.|+.|.+-+.. .+.+.. ... ....+..++|+++|+..... ..+.+.++...
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 37888886543 122222 222 36788999999998775543 34677777764
No 376
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=93.39 E-value=8.5 Score=37.70 Aligned_cols=107 Identities=15% Similarity=0.167 Sum_probs=66.5
Q ss_pred CEEEEEeCCCeEEEEeCCCCeEe--EEec-----------CCCceEEEEEccCCCCEEEEEeC--CC-------cEEEEe
Q 012367 321 NYLLSCSMDKTVRMWQVGCNQCL--NVFD-----------HHNYVTCVQFNPIDDNYFISGSI--DG-------KVRIWG 378 (465)
Q Consensus 321 ~~l~s~s~DgtV~lWD~~~~~~l--~~~~-----------h~~~V~~i~fsp~~~~~l~sgs~--Dg-------~I~iwd 378 (465)
+.++--+..|.|+--|+...... ..+. -.+.-.-+++++..+++++.-.. ++ .|-++|
T Consensus 196 ~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D 275 (342)
T PF06433_consen 196 GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYD 275 (342)
T ss_dssp TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEE
T ss_pred CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEE
Confidence 45666778888888887655421 2221 01112346777734444443221 11 377788
Q ss_pred CCCCeEEecccCCCCeEEEEEeeCCC-EEEEEE-cCCcEEEEEecCCceee
Q 012367 379 VCEKRVVDWADVRDVISAICYIPDGK-GFIVGS-ITGTCHFYKASGNDLKL 427 (465)
Q Consensus 379 ~~~~~~~~~~~~~~~V~sv~~spdg~-~l~sgs-~dG~v~iwd~~~~~~~~ 427 (465)
+.+++.+........+.+|..+.+.+ .|++.+ .+|.+.+||..++++.-
T Consensus 276 ~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 276 LKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp TTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred CCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 99998887666666788999998876 555544 47999999999987753
No 377
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.36 E-value=0.33 Score=53.28 Aligned_cols=69 Identities=23% Similarity=0.420 Sum_probs=50.1
Q ss_pred cccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEE---EEEccCCCCEEEEEeCCCcEEEEeC
Q 012367 308 HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTC---VQFNPIDDNYFISGSIDGKVRIWGV 379 (465)
Q Consensus 308 h~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~---i~fsp~~~~~l~sgs~Dg~I~iwd~ 379 (465)
-.++|++++|+.+| .++.|-.+|.|.+||+..++.++.+. |..+++. +.+.. ++..++++...|. +|.+
T Consensus 129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~-~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTS-QNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeC-CCcEEEEccCCCc--eEEE
Confidence 45799999999887 67788889999999999999888884 4443333 33333 4456777777775 5544
No 378
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.34 E-value=7.7 Score=37.02 Aligned_cols=199 Identities=13% Similarity=0.139 Sum_probs=110.7
Q ss_pred hhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (465)
Q Consensus 215 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (465)
.+.+.|-+..|.++.|+|+.+.|.+......-.||=..+++.......
T Consensus 78 akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL-------------------------------- 125 (316)
T COG3204 78 AKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL-------------------------------- 125 (316)
T ss_pred ccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecc--------------------------------
Confidence 344667777799999999999888887777777775555544332211
Q ss_pred eeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeE----------eEEecC-CCceEEEEEccCCC
Q 012367 295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC----------LNVFDH-HNYVTCVQFNPIDD 362 (465)
Q Consensus 295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~----------l~~~~h-~~~V~~i~fsp~~~ 362 (465)
.+ -.+.-.|.|..+| ++++--.++++.++.+..+.. +....+ +.....++|.| ..
T Consensus 126 -----------~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~ 192 (316)
T COG3204 126 -----------TG-FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VD 192 (316)
T ss_pred -----------cc-cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CC
Confidence 11 1222345555444 444555566666666544321 111223 45678999999 55
Q ss_pred CEEEEEeCCCcEEEEeCCCCe-EEe---cccC-------CCCeEEEEEeeC-CCEEEEEEcCCcEEEEEecCCceeeeEe
Q 012367 363 NYFISGSIDGKVRIWGVCEKR-VVD---WADV-------RDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKV 430 (465)
Q Consensus 363 ~~l~sgs~Dg~I~iwd~~~~~-~~~---~~~~-------~~~V~sv~~spd-g~~l~sgs~dG~v~iwd~~~~~~~~~~~ 430 (465)
..|..+=.-.-+.||.+.... ... ...+ -..|.++.|++. +..++.+..++.+.-.|..+.- ...+
T Consensus 193 ~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~--~~~l 270 (316)
T COG3204 193 HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEV--IELL 270 (316)
T ss_pred ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCe--eeeE
Confidence 555555566667777665332 111 1111 134778889874 4555666667877778877664 3344
Q ss_pred eecCcccc---cCCceeeEEEeecCCccceeeeecC
Q 012367 431 DFHDRKKT---SGNKITGIQGRISKNYDNFRRFQTP 463 (465)
Q Consensus 431 ~~~~~~~~---~~~~It~~~f~p~gs~d~~~~~~~p 463 (465)
.+.+.... ...+-.|+..-+ .+++-++..|
T Consensus 271 sL~~g~~gL~~dipqaEGiamDd---~g~lYIvSEP 303 (316)
T COG3204 271 SLTKGNHGLSSDIPQAEGIAMDD---DGNLYIVSEP 303 (316)
T ss_pred EeccCCCCCcccCCCcceeEECC---CCCEEEEecC
Confidence 44333222 233444444433 3344444444
No 379
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.30 E-value=0.27 Score=32.31 Aligned_cols=31 Identities=35% Similarity=0.473 Sum_probs=26.6
Q ss_pred CcEEEEEECCCC---CEEEEEeCCCcEEEEecCC
Q 012367 223 GCIWTLKFSPDG---RYLASGGEDGVVRIWHVTS 253 (465)
Q Consensus 223 ~~I~~l~fspdg---~~LaSgs~Dg~V~iWd~~~ 253 (465)
|+|++++|||.. .+||-+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 579999999854 4888888889999999985
No 380
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.19 E-value=3.9 Score=34.24 Aligned_cols=103 Identities=12% Similarity=0.179 Sum_probs=72.1
Q ss_pred EEEEEeCCCeEEEEeCC--------CCeEeEEecCCCceEEEEEccC----CCCEEEEEeCCCcEEEEeCCCCeEEeccc
Q 012367 322 YLLSCSMDKTVRMWQVG--------CNQCLNVFDHHNYVTCVQFNPI----DDNYFISGSIDGKVRIWGVCEKRVVDWAD 389 (465)
Q Consensus 322 ~l~s~s~DgtV~lWD~~--------~~~~l~~~~h~~~V~~i~fsp~----~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~ 389 (465)
.|++++.-+.|.|++.. ....++.+.-...|++|+-.|. ....|+.|+ ...|..||+....-+.+..
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~Fyke 90 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDLFYKE 90 (136)
T ss_pred eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchhhhhh
Confidence 67788888999999875 3345677778888999876553 355677766 5679999999888777788
Q ss_pred CCCCeEEEEEeeCC---CEEEEEEcCCcEEEEEecCCce
Q 012367 390 VRDVISAICYIPDG---KGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 390 ~~~~V~sv~~spdg---~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
..+.|+++.+-.-+ .-++..+.+..|.-||..+...
T Consensus 91 ~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 91 VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence 88889998885421 2344444455666666665544
No 381
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.02 E-value=4.2 Score=42.47 Aligned_cols=105 Identities=15% Similarity=0.163 Sum_probs=70.3
Q ss_pred CEEEEEeCCCeEEEEeCCCCeEeEEecCCCc------eE-EEEEccCCCCEEEEEe---------CCCcEEEEeCCCCeE
Q 012367 321 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY------VT-CVQFNPIDDNYFISGS---------IDGKVRIWGVCEKRV 384 (465)
Q Consensus 321 ~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~------V~-~i~fsp~~~~~l~sgs---------~Dg~I~iwd~~~~~~ 384 (465)
+.++.++.++.|.-+|..+|+.+..+..... +. ...+ .+..++.++ .++.|..+|..+++.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v---~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTI---VKKLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEE---ECCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 6788888999999999999999988864332 11 1222 224455553 367899999999886
Q ss_pred EecccCC-C--------------------Ce-EEEEEeeCCCEEEEEEcCC------------------cEEEEEecCCc
Q 012367 385 VDWADVR-D--------------------VI-SAICYIPDGKGFIVGSITG------------------TCHFYKASGND 424 (465)
Q Consensus 385 ~~~~~~~-~--------------------~V-~sv~~spdg~~l~sgs~dG------------------~v~iwd~~~~~ 424 (465)
+-..... . .| .+.++.+.+..+++++.++ .+.-+|+.+++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 6422111 0 01 1345555667888888665 78899999988
Q ss_pred eeee
Q 012367 425 LKLE 428 (465)
Q Consensus 425 ~~~~ 428 (465)
....
T Consensus 268 ~~W~ 271 (488)
T cd00216 268 VKWF 271 (488)
T ss_pred EEEE
Confidence 8655
No 382
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.82 E-value=2.9 Score=44.54 Aligned_cols=105 Identities=11% Similarity=0.165 Sum_probs=68.1
Q ss_pred EEEecCCCEEEEEe-CCCeEEEEeCCCCeEeEEe--cCCCceEEEEEcc-CCCCEEEEEeCCCcEEEEeCC-----C-C-
Q 012367 314 DLAWSNSNYLLSCS-MDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNP-IDDNYFISGSIDGKVRIWGVC-----E-K- 382 (465)
Q Consensus 314 ~l~~s~~~~l~s~s-~DgtV~lWD~~~~~~l~~~--~h~~~V~~i~fsp-~~~~~l~sgs~Dg~I~iwd~~-----~-~- 382 (465)
-+.-+.-+.++... ...++.|||.+.+...... ...+.|.++.|.. .+++.+++.|..+.|.++--. . +
T Consensus 34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p 113 (631)
T PF12234_consen 34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP 113 (631)
T ss_pred eEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence 33333334444333 3457999999988754433 4578999998853 178889999999999998542 1 1
Q ss_pred -----eEEecccCC-CCeEEEEEeeCCCEEEEEEcCCcEEEEEe
Q 012367 383 -----RVVDWADVR-DVISAICYIPDGKGFIVGSITGTCHFYKA 420 (465)
Q Consensus 383 -----~~~~~~~~~-~~V~sv~~spdg~~l~sgs~dG~v~iwd~ 420 (465)
+.+....++ .+|.+.+|.++|..+ +|+ ...+.|+|-
T Consensus 114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~Lv-V~s-GNqlfv~dk 155 (631)
T PF12234_consen 114 SWAPIRKIDISSHTPHPIGDSIWLKDGTLV-VGS-GNQLFVFDK 155 (631)
T ss_pred ccceeEEEEeecCCCCCccceeEecCCeEE-EEe-CCEEEEECC
Confidence 112234444 679999999999544 443 345677763
No 383
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.78 E-value=5.6 Score=36.67 Aligned_cols=97 Identities=11% Similarity=0.152 Sum_probs=63.3
Q ss_pred EEEEecCCC--EEEEEeCCCeEEEEe--CCCCeE-----eEEecC----C-CceEEEEEccCCCCEEEEEeCCCcEEEEe
Q 012367 313 LDLAWSNSN--YLLSCSMDKTVRMWQ--VGCNQC-----LNVFDH----H-NYVTCVQFNPIDDNYFISGSIDGKVRIWG 378 (465)
Q Consensus 313 ~~l~~s~~~--~l~s~s~DgtV~lWD--~~~~~~-----l~~~~h----~-~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd 378 (465)
+.++|+.+. +.++-+.+-+|.-|| ..+|.. +..+.. . -..-.++... +|+++++.-..++|...|
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVD 239 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEEC
Confidence 467787553 666778888888888 445432 222221 1 1122334454 889999999999999999
Q ss_pred CCCCeEEe-cccCCCCeEEEEEeeC-CCEEEEEE
Q 012367 379 VCEKRVVD-WADVRDVISAICYIPD-GKGFIVGS 410 (465)
Q Consensus 379 ~~~~~~~~-~~~~~~~V~sv~~spd-g~~l~sgs 410 (465)
..+++++. +.-....|+++||--- -..+++.+
T Consensus 240 p~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 99998775 4445778999999732 23444433
No 384
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.76 E-value=10 Score=36.91 Aligned_cols=112 Identities=13% Similarity=0.205 Sum_probs=68.9
Q ss_pred ceEEEEecCCCEEEEEeCC----------CeEEEEeCC-CCeEeEEec-CCCceEEEEEccCCCCEEEEEeC-CCcEEEE
Q 012367 311 DVLDLAWSNSNYLLSCSMD----------KTVRMWQVG-CNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI-DGKVRIW 377 (465)
Q Consensus 311 ~V~~l~~s~~~~l~s~s~D----------gtV~lWD~~-~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~-Dg~I~iw 377 (465)
..+++...|+|.+..+... ..-.||-+. .+..++.+. +-..-+.|+|+| +++.++..-. .+.|.-|
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~Sp-Dg~tly~aDT~~~~i~r~ 190 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSP-DGKTLYVADTPANRIHRY 190 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECC-CCCEEEEEeCCCCeEEEE
Confidence 4456677777755555444 112344444 455555553 355667899999 8866665544 4778888
Q ss_pred eCCC--Ce------EEecccCCCCeEEEEEeeCCCEEEEEEcCC-cEEEEEecCC
Q 012367 378 GVCE--KR------VVDWADVRDVISAICYIPDGKGFIVGSITG-TCHFYKASGN 423 (465)
Q Consensus 378 d~~~--~~------~~~~~~~~~~V~sv~~spdg~~l~sgs~dG-~v~iwd~~~~ 423 (465)
++.. +. .+......+..-.++...+|.+-+++-..| .|.+|+..+.
T Consensus 191 ~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~ 245 (307)
T COG3386 191 DLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGK 245 (307)
T ss_pred ecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCCc
Confidence 7752 11 122333456667788888888776555554 8999999843
No 385
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.71 E-value=9.1 Score=36.17 Aligned_cols=134 Identities=9% Similarity=0.060 Sum_probs=81.2
Q ss_pred cceEEEEecCCC-EEEEEeCCC--eEEEEeCCCCeEeEEecCCC--ceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeE
Q 012367 310 GDVLDLAWSNSN-YLLSCSMDK--TVRMWQVGCNQCLNVFDHHN--YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 384 (465)
Q Consensus 310 ~~V~~l~~s~~~-~l~s~s~Dg--tV~lWD~~~~~~l~~~~h~~--~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~ 384 (465)
.-...+.|..++ ++-|.+.-| .|+.+|+.+++.+....-.. .-..++.. ++.++.-.-.++...+||..+-+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence 345678885555 556777766 79999999999877664322 33444444 345555566789999999998877
Q ss_pred EecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEe
Q 012367 385 VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGR 449 (465)
Q Consensus 385 ~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~ 449 (465)
+........=..++ .||+.|+.......++++|..+-+... .+.... ...+...+.-+.+.
T Consensus 123 ~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~-~i~V~~-~g~pv~~LNELE~i 183 (264)
T PF05096_consen 123 IGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVR-TIQVTD-NGRPVSNLNELEYI 183 (264)
T ss_dssp EEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEE-EEE-EE-TTEE---EEEEEEE
T ss_pred EEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEE-EEEEEE-CCEECCCcEeEEEE
Confidence 76545455556666 578888888888889999887655533 333322 12234556666665
No 386
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.60 E-value=3.4 Score=39.29 Aligned_cols=117 Identities=9% Similarity=0.164 Sum_probs=86.7
Q ss_pred ccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEecC--CCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCC-
Q 012367 307 GHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDH--HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK- 382 (465)
Q Consensus 307 gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h--~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~- 382 (465)
|-...|.++.|+|+ +.|++......-.||=...|+.++++.- -.....|.+.. ++.|.++-=.++.+.++.+...
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCCc
Confidence 55566999999997 5788888888888887788999998852 22445667766 7777777777888888877543
Q ss_pred eEE-------e--cccC-CCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCc
Q 012367 383 RVV-------D--WADV-RDVISAICYIPDGKGFIVGSITGTCHFYKASGND 424 (465)
Q Consensus 383 ~~~-------~--~~~~-~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~ 424 (465)
.++ . ...+ +.....++|.|..+.|.++-...-+.||.+....
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~ 213 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSP 213 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCC
Confidence 211 1 1122 5567889999999999999999888998887443
No 387
>PRK13616 lipoprotein LpqB; Provisional
Probab=92.54 E-value=0.75 Score=49.01 Aligned_cols=105 Identities=18% Similarity=0.112 Sum_probs=62.0
Q ss_pred ccccceEEEEecCCC-EEEEEe------CCC--eEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCC-CcEEE
Q 012367 307 GHKGDVLDLAWSNSN-YLLSCS------MDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID-GKVRI 376 (465)
Q Consensus 307 gh~~~V~~l~~s~~~-~l~s~s------~Dg--tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~D-g~I~i 376 (465)
+....+.+.+++|++ .++... .|. .|.+++... .. ..+......++-.|+| ++..+.+.+.. ..+++
T Consensus 347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g~~~t~PsWsp-DG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEGHSLTRPSWSL-DADAVWVVVDGNTVVRV 423 (591)
T ss_pred ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecCCCCCCceECC-CCCceEEEecCcceEEE
Confidence 333467888899986 333332 243 455556532 22 3332233478889999 87877776533 12223
Q ss_pred E-----------eCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEE
Q 012367 377 W-----------GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHF 417 (465)
Q Consensus 377 w-----------d~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~i 417 (465)
. ++..+.... .....|..+.|+|||..++... +|.|.+
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred eccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 3 333332222 3356799999999999888765 577766
No 388
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=92.50 E-value=0.72 Score=45.92 Aligned_cols=100 Identities=13% Similarity=0.190 Sum_probs=64.9
Q ss_pred ccCCCCEEEEE---------eCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367 358 NPIDDNYFISG---------SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 428 (465)
Q Consensus 358 sp~~~~~l~sg---------s~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~ 428 (465)
|| |+++++.. +..+.+.|||+.+++...+......+....|+|+|+.++... ++.|.++++.++...
T Consensus 1 S~-d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~-- 76 (353)
T PF00930_consen 1 SP-DGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET-- 76 (353)
T ss_dssp -T-TSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE--
T ss_pred CC-CCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeE--
Confidence 35 66665552 234679999999998888766678899999999999988875 678999998777333
Q ss_pred EeeecCc-cccc-----------CCceeeEEEeecCCccceeeee
Q 012367 429 KVDFHDR-KKTS-----------GNKITGIQGRISKNYDNFRRFQ 461 (465)
Q Consensus 429 ~~~~~~~-~~~~-----------~~~It~~~f~p~gs~d~~~~~~ 461 (465)
++...+. .... ...-.++.|+|++.+--+..++
T Consensus 77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 2322220 0000 2334678899999886654443
No 389
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.45 E-value=2.5 Score=46.06 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=56.2
Q ss_pred ceEEEEEccCCCCEEEEEeCCCcEEEEeCCC----------Ce--EE--e--------cccCCCCeEEEEEeeC---CCE
Q 012367 351 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCE----------KR--VV--D--------WADVRDVISAICYIPD---GKG 405 (465)
Q Consensus 351 ~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~----------~~--~~--~--------~~~~~~~V~sv~~spd---g~~ 405 (465)
.|..|.+|| +|.+++..|..| |.|-.+.. ++ +. . .......|..+.|+|. +..
T Consensus 86 ~v~~i~~n~-~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 86 EVHQISLNP-TGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eEEEEEECC-CCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 588999999 999998888755 44444421 11 11 0 1234457889999996 579
Q ss_pred EEEEEcCCcEEEEEecCCceeeeEeee
Q 012367 406 FIVGSITGTCHFYKASGNDLKLEKVDF 432 (465)
Q Consensus 406 l~sgs~dG~v~iwd~~~~~~~~~~~~~ 432 (465)
|++-+.|+++|+||+....-+...+.+
T Consensus 164 l~vLtsdn~lR~y~~~~~~~p~~v~~~ 190 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQHPWQVLSL 190 (717)
T ss_pred EEEEecCCEEEEEecCCCCCCeEEEEc
Confidence 999999999999999866555554443
No 390
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.01 E-value=1.5 Score=40.50 Aligned_cols=73 Identities=12% Similarity=0.190 Sum_probs=53.7
Q ss_pred CCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEec-------c--------cCCCCeEEEEEeeCCCEEEEEEcCC
Q 012367 349 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW-------A--------DVRDVISAICYIPDGKGFIVGSITG 413 (465)
Q Consensus 349 ~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~-------~--------~~~~~V~sv~~spdg~~l~sgs~dG 413 (465)
..++..+.. ++.++++-..+|.+++||+.+++.+.. . .....|..+.++.+|.-+++- .+|
T Consensus 12 gs~~~~l~~---~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng 87 (219)
T PF07569_consen 12 GSPVSFLEC---NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNG 87 (219)
T ss_pred CCceEEEEe---CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCC
Confidence 344444443 788999999999999999998875531 1 355678999999888776665 468
Q ss_pred cEEEEEecCCce
Q 012367 414 TCHFYKASGNDL 425 (465)
Q Consensus 414 ~v~iwd~~~~~~ 425 (465)
..+.|+.+-+.-
T Consensus 88 ~~y~y~~~L~~W 99 (219)
T PF07569_consen 88 DSYSYSPDLGCW 99 (219)
T ss_pred CEEEecccccee
Confidence 899998765443
No 391
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=91.59 E-value=15 Score=36.10 Aligned_cols=165 Identities=16% Similarity=0.213 Sum_probs=98.4
Q ss_pred EEEECCCCCEEEEEeC----------CCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367 227 TLKFSPDGRYLASGGE----------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (465)
Q Consensus 227 ~l~fspdg~~LaSgs~----------Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (465)
.+..+|+|+.+++++. .-.|.+||..+.........+..+.
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R----------------------------- 90 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPR----------------------------- 90 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-----------------------------
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcch-----------------------------
Confidence 3568999998887532 3469999999876654433322100
Q ss_pred ecCCcceeeeccccceEEEEecCCC-E--EEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCc
Q 012367 297 IEESPLQELHGHKGDVLDLAWSNSN-Y--LLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK 373 (465)
Q Consensus 297 ~~~~~~~~~~gh~~~V~~l~~s~~~-~--l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~ 373 (465)
.... .+ ...+++++++ + +.-.+--..|.|-|+..++.+..+...+ |...-|...+-|.+-+.||+
T Consensus 91 -----~~~~-~~---~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG---C~~iyP~~~~~F~~lC~DGs 158 (342)
T PF06433_consen 91 -----AQVV-PY---KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG---CWLIYPSGNRGFSMLCGDGS 158 (342)
T ss_dssp -------BS------GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS---EEEEEEEETTEEEEEETTSC
T ss_pred -----heec-cc---ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC---EEEEEecCCCceEEEecCCc
Confidence 0000 01 1123455554 2 2233445679999999999998887655 33333434566888889999
Q ss_pred EEEEeCC-CCeEEe-----cccCCC-CeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee-Eeee
Q 012367 374 VRIWGVC-EKRVVD-----WADVRD-VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDF 432 (465)
Q Consensus 374 I~iwd~~-~~~~~~-----~~~~~~-~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~-~~~~ 432 (465)
+.-..+. .|+... +....+ .+..-++...+..++--+.+|.|+--|+.+...... .+.+
T Consensus 159 l~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~ 225 (342)
T PF06433_consen 159 LLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSL 225 (342)
T ss_dssp EEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEES
T ss_pred eEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccc
Confidence 9988886 444432 111222 233445555666677789999999999998876554 4543
No 392
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=91.23 E-value=9.2 Score=36.08 Aligned_cols=142 Identities=17% Similarity=0.108 Sum_probs=80.0
Q ss_pred ceEEEEecCCC-EEEEEe-CCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEe-CCCCe--EE
Q 012367 311 DVLDLAWSNSN-YLLSCS-MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG-VCEKR--VV 385 (465)
Q Consensus 311 ~V~~l~~s~~~-~l~s~s-~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd-~~~~~--~~ 385 (465)
.+.+.++++++ .++... .++.-.||-...+...........++.-.|.+ ++...+....+...+++. ...+. .+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 67889999876 343333 23333344333333333332334778889999 777777766667777773 33332 22
Q ss_pred --ecccCCCCeEEEEEeeCCCEEEEEE---cCCcEEEEEecCCcee--eeEeeecCcccccCCceeeEEEeecCC
Q 012367 386 --DWADVRDVISAICYIPDGKGFIVGS---ITGTCHFYKASGNDLK--LEKVDFHDRKKTSGNKITGIQGRISKN 453 (465)
Q Consensus 386 --~~~~~~~~V~sv~~spdg~~l~sgs---~dG~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~It~~~f~p~gs 453 (465)
.+......|+++.++|||..++.-. .++.|.+--+....-- ................++++.|.++++
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST 178 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence 2332333899999999999877766 3577776655422111 111111111111246788888887754
No 393
>PHA02713 hypothetical protein; Provisional
Probab=91.10 E-value=3 Score=44.34 Aligned_cols=91 Identities=9% Similarity=0.022 Sum_probs=53.0
Q ss_pred eEEEEeCCCCeEe--EEecCCC-ceEEEEEccCCCCEEEEEeCC------CcEEEEeCCC-CeEEecccCC---CCeEEE
Q 012367 331 TVRMWQVGCNQCL--NVFDHHN-YVTCVQFNPIDDNYFISGSID------GKVRIWGVCE-KRVVDWADVR---DVISAI 397 (465)
Q Consensus 331 tV~lWD~~~~~~l--~~~~h~~-~V~~i~fsp~~~~~l~sgs~D------g~I~iwd~~~-~~~~~~~~~~---~~V~sv 397 (465)
+|..||..+.+=. ..+.+.. ....+.+ ++.+.+.|+.+ ..+..||..+ .+........ .....+
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~---~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~ 509 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSH---KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI 509 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccCcEEEE---CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE
Confidence 5778888776422 2221111 1112222 67777888764 2467899887 5554332222 222222
Q ss_pred EEeeCCCEEEEEEcCC--cEEEEEecCCcee
Q 012367 398 CYIPDGKGFIVGSITG--TCHFYKASGNDLK 426 (465)
Q Consensus 398 ~~spdg~~l~sgs~dG--~v~iwd~~~~~~~ 426 (465)
.+ +|+..++|+.+| .+-.||..+++..
T Consensus 510 ~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 510 LH--DNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred EE--CCEEEEEeeecceeehhhcCccccccc
Confidence 22 788999999998 7788888877553
No 394
>PRK13684 Ycf48-like protein; Provisional
Probab=90.61 E-value=18 Score=35.60 Aligned_cols=107 Identities=10% Similarity=0.082 Sum_probs=61.7
Q ss_pred cceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec-----CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeE
Q 012367 310 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 384 (465)
Q Consensus 310 ~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~-----h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~ 384 (465)
..+.++.+.+++.++..+..|.+++=....+..-.... ....+..+.+.| ++..+++| .+|.|. .....++-
T Consensus 215 ~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~~G-~~G~v~-~S~d~G~t 291 (334)
T PRK13684 215 RRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIWAGG-GNGTLL-VSKDGGKT 291 (334)
T ss_pred ccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcC-CCCEEEEc-CCCeEE-EeCCCCCC
Confidence 56778888887755555667776543333343322221 123578899998 77766655 466554 33343332
Q ss_pred Ee-c---ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEe
Q 012367 385 VD-W---ADVRDVISAICYIPDGKGFIVGSITGTCHFYKA 420 (465)
Q Consensus 385 ~~-~---~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~ 420 (465)
-. . .........+.|..+++.++ .+..|.|--|+-
T Consensus 292 W~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 292 WEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVG 330 (334)
T ss_pred CeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEecC
Confidence 21 1 22334577788887766655 457888876653
No 395
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=90.56 E-value=22 Score=36.24 Aligned_cols=59 Identities=19% Similarity=0.309 Sum_probs=46.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEe
Q 012367 362 DNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKA 420 (465)
Q Consensus 362 ~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~ 420 (465)
..++..=+.||.+.+|+-..--........--...++|.|.-..|++++.+..+.-|..
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 46788889999999999877655444444445566889998889999999888888875
No 396
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=90.56 E-value=5 Score=40.50 Aligned_cols=106 Identities=19% Similarity=0.232 Sum_probs=56.6
Q ss_pred CCeEEEEeCCCCeEeEEecCC---CceEEEEEccC-CCCE-EEEEeCCCcEEEEeC-CCCe-----EEeccc--------
Q 012367 329 DKTVRMWQVGCNQCLNVFDHH---NYVTCVQFNPI-DDNY-FISGSIDGKVRIWGV-CEKR-----VVDWAD-------- 389 (465)
Q Consensus 329 DgtV~lWD~~~~~~l~~~~h~---~~V~~i~fsp~-~~~~-l~sgs~Dg~I~iwd~-~~~~-----~~~~~~-------- 389 (465)
..++.+||+.+.+.++++... ..+..|.|... +..+ |+.+...++|..|-- ..+. ++....
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 368999999999999999644 24566777431 3334 333334555555433 3332 222211
Q ss_pred ---------CCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCceeee--EeeecC
Q 012367 390 ---------VRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLE--KVDFHD 434 (465)
Q Consensus 390 ---------~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~~~~--~~~~~~ 434 (465)
...-|+.|..|.|.++|.+.+. +|.++.||++...-+.. ++.+-+
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG 357 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGG 357 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BT
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECc
Confidence 1355899999999999988886 89999999997554333 555444
No 397
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=90.34 E-value=7.2 Score=37.41 Aligned_cols=117 Identities=16% Similarity=0.254 Sum_probs=74.8
Q ss_pred CeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEe------CCCcEEEEeCCCCeEEeccc-----CCCCeEEE
Q 012367 330 KTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS------IDGKVRIWGVCEKRVVDWAD-----VRDVISAI 397 (465)
Q Consensus 330 gtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs------~Dg~I~iwd~~~~~~~~~~~-----~~~~V~sv 397 (465)
..|++||..+.+=...- .-.+.|+.+.|.. +.++++.|. ....+..||+.+.....+.+ ..++|+++
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 45999998866543333 3567899999985 667777765 35678899999887755444 34788888
Q ss_pred EEee-CC-CEEEEEE-cCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec
Q 012367 398 CYIP-DG-KGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS 451 (465)
Q Consensus 398 ~~sp-dg-~~l~sgs-~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~ 451 (465)
.+.. |+ +..+.|. .+|.-.+...++.+....... .......|.++++.|-
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~----~~~~~t~I~~l~~~~l 147 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSD----ILGSGTTIRGLQVLPL 147 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCceEecccc----ccCCCCEEEEEEEEec
Confidence 8753 33 3444555 466666666665544322111 1123467888888776
No 398
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=90.12 E-value=17 Score=34.29 Aligned_cols=103 Identities=15% Similarity=0.235 Sum_probs=61.8
Q ss_pred ceEEEEecCCCEEEEE-eCCCeEEEEe-CCCCeEeE-Eec---CCCceEEEEEccCCCCEEEEEe---CCCcEEEEeCC-
Q 012367 311 DVLDLAWSNSNYLLSC-SMDKTVRMWQ-VGCNQCLN-VFD---HHNYVTCVQFNPIDDNYFISGS---IDGKVRIWGVC- 380 (465)
Q Consensus 311 ~V~~l~~s~~~~l~s~-s~DgtV~lWD-~~~~~~l~-~~~---h~~~V~~i~fsp~~~~~l~sgs---~Dg~I~iwd~~- 380 (465)
.+..-.|++++.+.+. ..+...+++. ..++.... ... ....|..+.++| |+..++... .++.|.|=-+.
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r 145 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVVR 145 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEEe
Confidence 5666778887755544 3455556663 33332221 111 122899999999 888776655 34667766542
Q ss_pred --CC--eE----Ee-cccCCCCeEEEEEeeCCCEEEEEEcCCc
Q 012367 381 --EK--RV----VD-WADVRDVISAICYIPDGKGFIVGSITGT 414 (465)
Q Consensus 381 --~~--~~----~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~ 414 (465)
.+ .. .. .......++++.|.+++.+++.+...+.
T Consensus 146 ~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 146 DGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGG 188 (253)
T ss_pred CCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCC
Confidence 22 11 11 1233567999999999988777766443
No 399
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=89.97 E-value=5.7 Score=43.76 Aligned_cols=109 Identities=12% Similarity=0.122 Sum_probs=73.0
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceE---------EEEEcc---------------CCCCEEEEEeCCCcEE
Q 012367 320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVT---------CVQFNP---------------IDDNYFISGSIDGKVR 375 (465)
Q Consensus 320 ~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~---------~i~fsp---------------~~~~~l~sgs~Dg~I~ 375 (465)
++.|+.++.++.|.-.|..+|+.+..+.....+. .+.+.. .++..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 5688888889999999999999999886433221 122211 1345788888999999
Q ss_pred EEeCCCCeEEecccCCCCeE-------------EEEEee--CCCEEEEEEc----------CCcEEEEEecCCceeee
Q 012367 376 IWGVCEKRVVDWADVRDVIS-------------AICYIP--DGKGFIVGSI----------TGTCHFYKASGNDLKLE 428 (465)
Q Consensus 376 iwd~~~~~~~~~~~~~~~V~-------------sv~~sp--dg~~l~sgs~----------dG~v~iwd~~~~~~~~~ 428 (465)
-.|..+++.+...+....|. .+.-.| .+..+++|+. +|.|+-||+.++++.-.
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 99999998875333322221 111112 2345666643 68999999999998655
No 400
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=89.39 E-value=3.4 Score=36.47 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=25.3
Q ss_pred cceEEEEecCCC-------EEEEEeCCCeEEEEeCCC
Q 012367 310 GDVLDLAWSNSN-------YLLSCSMDKTVRMWQVGC 339 (465)
Q Consensus 310 ~~V~~l~~s~~~-------~l~s~s~DgtV~lWD~~~ 339 (465)
..|..++|||.| +|++.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 488999999843 788999999999998764
No 401
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.27 E-value=1.5 Score=28.92 Aligned_cols=31 Identities=10% Similarity=0.201 Sum_probs=25.8
Q ss_pred CCeEEEEEeeCC---CEEEEEEcCCcEEEEEecC
Q 012367 392 DVISAICYIPDG---KGFIVGSITGTCHFYKASG 422 (465)
Q Consensus 392 ~~V~sv~~spdg---~~l~sgs~dG~v~iwd~~~ 422 (465)
+.|.++.|+|++ .+|+.+-..|.|+++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 4778877889999999985
No 402
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=89.06 E-value=10 Score=40.48 Aligned_cols=116 Identities=19% Similarity=0.234 Sum_probs=69.3
Q ss_pred EEEEecCCCEEEEEeCC------CeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCc-----EEEEeCCC
Q 012367 313 LDLAWSNSNYLLSCSMD------KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK-----VRIWGVCE 381 (465)
Q Consensus 313 ~~l~~s~~~~l~s~s~D------gtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~-----I~iwd~~~ 381 (465)
.+++..++...++|+.| .++..||..+++=...-.....-........++.+.+.||.||. |-.||..+
T Consensus 326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~ 405 (571)
T KOG4441|consen 326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVT 405 (571)
T ss_pred ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCC
Confidence 34555566677888888 36888888877622211111111111111227889999999864 77788877
Q ss_pred CeEEecccCCCCeEEEEE-eeCCCEEEEEEcCC------cEEEEEecCCceeee
Q 012367 382 KRVVDWADVRDVISAICY-IPDGKGFIVGSITG------TCHFYKASGNDLKLE 428 (465)
Q Consensus 382 ~~~~~~~~~~~~V~sv~~-spdg~~l~sgs~dG------~v~iwd~~~~~~~~~ 428 (465)
.+..............+. .-+|+..++|+.+| ++..||..+++....
T Consensus 406 ~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~ 459 (571)
T KOG4441|consen 406 NKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI 459 (571)
T ss_pred CcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeec
Confidence 765544433333333332 23788888888654 567888888776543
No 403
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.88 E-value=17 Score=33.17 Aligned_cols=110 Identities=14% Similarity=0.189 Sum_probs=70.4
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCC--CCeEeEEecCCCceEEEEEccCCCCEEEEEeCC---C---cEEEE---eCC--
Q 012367 314 DLAWSNSNYLLSCSMDKTVRMWQVG--CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---G---KVRIW---GVC-- 380 (465)
Q Consensus 314 ~l~~s~~~~l~s~s~DgtV~lWD~~--~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~D---g---~I~iw---d~~-- 380 (465)
.++-.+.+.|+.+...+.|.+|++. ..+.+..|..-+.|..+.++. .|+|++|-=.+ . .+|+| ...
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 3443443445444666789999987 445677787778999999999 89999986432 2 56765 221
Q ss_pred CCe--EEeccc---------------------CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 381 EKR--VVDWAD---------------------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 381 ~~~--~~~~~~---------------------~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
... .++..+ ....+.+++..|-..-|++|+ ++.+.+|.+.....
T Consensus 101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~ 167 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTI 167 (215)
T ss_pred cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEE
Confidence 111 111222 234577888888555566665 45788998876555
No 404
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.56 E-value=5.5 Score=36.74 Aligned_cols=74 Identities=14% Similarity=0.146 Sum_probs=53.4
Q ss_pred ceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe---------------cCCCceEEEEEccCCCCEEEEEeCCCcEE
Q 012367 311 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF---------------DHHNYVTCVQFNPIDDNYFISGSIDGKVR 375 (465)
Q Consensus 311 ~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~---------------~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~ 375 (465)
++..+. ..+.+|++.+.+|.+++||+.+++++..- .....|..+.++. +|.-+++-+ +|..+
T Consensus 14 ~~~~l~-~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~ls-ng~~y 90 (219)
T PF07569_consen 14 PVSFLE-CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTLS-NGDSY 90 (219)
T ss_pred ceEEEE-eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEEe-CCCEE
Confidence 333444 24568999999999999999988765432 2345788888887 788777766 57889
Q ss_pred EEeCCCCeEEec
Q 012367 376 IWGVCEKRVVDW 387 (465)
Q Consensus 376 iwd~~~~~~~~~ 387 (465)
.|+..-+..+..
T Consensus 91 ~y~~~L~~W~~v 102 (219)
T PF07569_consen 91 SYSPDLGCWIRV 102 (219)
T ss_pred EeccccceeEEe
Confidence 999877765543
No 405
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=88.38 E-value=26 Score=34.12 Aligned_cols=108 Identities=12% Similarity=0.118 Sum_probs=66.9
Q ss_pred ceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCC--C----eEeEEe-c-CCCceEEEEEccCCCCEEEEEeCC
Q 012367 302 LQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGC--N----QCLNVF-D-HHNYVTCVQFNPIDDNYFISGSID 371 (465)
Q Consensus 302 ~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~--~----~~l~~~-~-h~~~V~~i~fsp~~~~~l~sgs~D 371 (465)
.+.+.+|-..-+.|+|||++ ++++=+..+.|.-|++.. + +....+ . ..+..-.++... ++++.+++..+
T Consensus 155 ~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~ 233 (307)
T COG3386 155 VRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWG 233 (307)
T ss_pred EEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccC
Confidence 33444455566789999987 444555568888887752 1 111111 1 334555666666 78888655544
Q ss_pred C-cEEEEeCCCCeEEecccCC-CCeEEEEEe-eCCCEEEEEEc
Q 012367 372 G-KVRIWGVCEKRVVDWADVR-DVISAICYI-PDGKGFIVGSI 411 (465)
Q Consensus 372 g-~I~iwd~~~~~~~~~~~~~-~~V~sv~~s-pdg~~l~sgs~ 411 (465)
| .|.+|+.. ++++...... ..+++++|- |+.+.|.+.+.
T Consensus 234 g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 234 GGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 4 89999988 6666544433 788888886 45565555544
No 406
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=88.28 E-value=13 Score=37.16 Aligned_cols=98 Identities=9% Similarity=0.162 Sum_probs=55.4
Q ss_pred cceEEEEecCCCEEEEEeC------------CC-eEEEEeCCC--Ce--EeEEe-cCCCceEEEEEccCCCCEEEEEeCC
Q 012367 310 GDVLDLAWSNSNYLLSCSM------------DK-TVRMWQVGC--NQ--CLNVF-DHHNYVTCVQFNPIDDNYFISGSID 371 (465)
Q Consensus 310 ~~V~~l~~s~~~~l~s~s~------------Dg-tV~lWD~~~--~~--~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~D 371 (465)
.....|+|.+++.|+.+.. .+ .|.+++-.+ ++ ....| ..-.....+++.+ ++ ++++ +..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV~-~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYVA-TPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEEe-CCC
Confidence 4556789988875555532 23 676765432 33 22344 2334568899988 77 5554 444
Q ss_pred CcEEEEeCCC-------Ce-EEe-ccc----CCCCeEEEEEeeCCCEEEEEE
Q 012367 372 GKVRIWGVCE-------KR-VVD-WAD----VRDVISAICYIPDGKGFIVGS 410 (465)
Q Consensus 372 g~I~iwd~~~-------~~-~~~-~~~----~~~~V~sv~~spdg~~l~sgs 410 (465)
..+++.|... .+ ++. +.. +......++|.|||.+.++-+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 4444445532 11 222 222 245578999999998766544
No 407
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.18 E-value=3.1 Score=46.42 Aligned_cols=98 Identities=13% Similarity=0.103 Sum_probs=70.9
Q ss_pred cceEEEEecCC--CEEEEEeCCCeEEEEeCCCC-eEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe
Q 012367 310 GDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCN-QCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD 386 (465)
Q Consensus 310 ~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~-~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~ 386 (465)
..+.++.|+|. -..+.+..|+.|++.-+... .....+.....++|++|+| .|.-++.|-..|++.-|...-.....
T Consensus 156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~leik~~ 234 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPSLEIKSE 234 (1405)
T ss_pred cccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEecc-ccceeeEecCCCeEEEeecccceeec
Confidence 45678889874 35777888999998877532 3344456777899999999 99999999999999998764432221
Q ss_pred cc----cCCCCeEEEEEeeCCCEEEE
Q 012367 387 WA----DVRDVISAICYIPDGKGFIV 408 (465)
Q Consensus 387 ~~----~~~~~V~sv~~spdg~~l~s 408 (465)
+. .-...|.+|+|-....++++
T Consensus 235 ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 235 IPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred ccCCCcCCCcceeEEEEecceeEEEE
Confidence 11 12467999999877666655
No 408
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.76 E-value=25 Score=35.74 Aligned_cols=118 Identities=17% Similarity=0.181 Sum_probs=62.0
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC-ceeee-
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD-EVFQI- 297 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~- 297 (465)
..+|+|.+++||+|.+.||.--.|++|.+.+....+......... ........+. +|......+.+...+ .+|..
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~c-k~k~~~IlGF--~W~~s~e~A~i~~~G~e~y~v~ 140 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQEC-KTKNANILGF--CWTSSTEIAFITDQGIEFYQVL 140 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHh-ccCcceeEEE--EEecCeeEEEEecCCeEEEEEc
Confidence 357799999999999999999999999999984322211110000 0000000000 111111112221111 22222
Q ss_pred -cCCcceeeeccccceEEEEecCCC--EEEEEe-CCCeEEEEeCCCC
Q 012367 298 -EESPLQELHGHKGDVLDLAWSNSN--YLLSCS-MDKTVRMWQVGCN 340 (465)
Q Consensus 298 -~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s-~DgtV~lWD~~~~ 340 (465)
+...++..+.|...|.-..|.++. .|++.+ ..++..=+.++++
T Consensus 141 pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 141 PEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred hhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 233455666788888888888864 233333 4455554555444
No 409
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=87.61 E-value=4.2 Score=41.56 Aligned_cols=97 Identities=19% Similarity=0.256 Sum_probs=62.7
Q ss_pred EEEeCCCeEEEEeCCC-CeEeEEecCCCceEEEEEcc---CCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEE
Q 012367 324 LSCSMDKTVRMWQVGC-NQCLNVFDHHNYVTCVQFNP---IDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAIC 398 (465)
Q Consensus 324 ~s~s~DgtV~lWD~~~-~~~l~~~~h~~~V~~i~fsp---~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~ 398 (465)
+.|-.+..|--.|.+- |.-+.......+++.-.|+. +..-|++.||..|-||+||.-..+.-+ +.+....|..+.
T Consensus 531 lvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~id 610 (776)
T COG5167 531 LVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHID 610 (776)
T ss_pred EEeecccceEEecccccCCceeeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeE
Confidence 3444444454445542 33334434444444444443 245699999999999999976654443 566788899999
Q ss_pred EeeCCCEEEEEEcCCcEEEEEec
Q 012367 399 YIPDGKGFIVGSITGTCHFYKAS 421 (465)
Q Consensus 399 ~spdg~~l~sgs~dG~v~iwd~~ 421 (465)
.+.+|+++++.+.. .+.+-|+.
T Consensus 611 vta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 611 VTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred eecCCcEEEEeecc-eEEEEecc
Confidence 99999998877644 56666665
No 410
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=87.51 E-value=33 Score=34.87 Aligned_cols=127 Identities=14% Similarity=0.256 Sum_probs=62.1
Q ss_pred CeEEEEeCCCCeEeEEecC----CCceEEEEEccCCCCEEEEEe--------------------CCCcEEEEeCCCCeEE
Q 012367 330 KTVRMWQVGCNQCLNVFDH----HNYVTCVQFNPIDDNYFISGS--------------------IDGKVRIWGVCEKRVV 385 (465)
Q Consensus 330 gtV~lWD~~~~~~l~~~~h----~~~V~~i~fsp~~~~~l~sgs--------------------~Dg~I~iwd~~~~~~~ 385 (465)
|-+.+.|-.+...+..... ...-+.+-|.| ..+.++|.. ...++.+||+.+.+++
T Consensus 157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~ 235 (461)
T PF05694_consen 157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLL 235 (461)
T ss_dssp -EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEE
T ss_pred CcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEe
Confidence 4577778777776666532 33556778888 777777764 3468999999999988
Q ss_pred ecccCC---CCeEEEEEeeC--CCEEEEE-EcCCcEE-EEEecCCceeee-EeeecCccccc-------------CCcee
Q 012367 386 DWADVR---DVISAICYIPD--GKGFIVG-SITGTCH-FYKASGNDLKLE-KVDFHDRKKTS-------------GNKIT 444 (465)
Q Consensus 386 ~~~~~~---~~V~sv~~spd--g~~l~sg-s~dG~v~-iwd~~~~~~~~~-~~~~~~~~~~~-------------~~~It 444 (465)
...... ..+..|.|..+ ..+-++| -..++|. +|....++.+.+ .+....++... ..-||
T Consensus 236 Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Lit 315 (461)
T PF05694_consen 236 QTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLIT 315 (461)
T ss_dssp EEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-----
T ss_pred eEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceE
Confidence 755543 35667777654 3333333 3355554 445467776666 45544432211 24589
Q ss_pred eEEEeecCCccce
Q 012367 445 GIQGRISKNYDNF 457 (465)
Q Consensus 445 ~~~f~p~gs~d~~ 457 (465)
.+.++.++.|..+
T Consensus 316 DI~iSlDDrfLYv 328 (461)
T PF05694_consen 316 DILISLDDRFLYV 328 (461)
T ss_dssp -EEE-TTS-EEEE
T ss_pred eEEEccCCCEEEE
Confidence 9999999887653
No 411
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=87.46 E-value=53 Score=36.64 Aligned_cols=108 Identities=13% Similarity=0.140 Sum_probs=71.1
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeEeEEec---CCCceEEEEEccC--CCC---EEEEEeCCCcEEEEeC-CCCeEEec--
Q 012367 319 NSNYLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPI--DDN---YFISGSIDGKVRIWGV-CEKRVVDW-- 387 (465)
Q Consensus 319 ~~~~l~s~s~DgtV~lWD~~~~~~l~~~~---h~~~V~~i~fsp~--~~~---~l~sgs~Dg~I~iwd~-~~~~~~~~-- 387 (465)
+.-.++.++.++.+...++..+. ++... ....|.|+.++|. +.+ +++.|.++..+.+.-. .+...+..
T Consensus 498 n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~ 576 (1096)
T KOG1897|consen 498 NASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQ 576 (1096)
T ss_pred cceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeec
Confidence 33467777777777777776655 33332 4568999999985 333 8899988877665443 34433331
Q ss_pred cc---CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceee
Q 012367 388 AD---VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL 427 (465)
Q Consensus 388 ~~---~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~ 427 (465)
.. ....|.-.++-.|+.+|+++..||.+..|.+..++.++
T Consensus 577 l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~l 619 (1096)
T KOG1897|consen 577 LSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQL 619 (1096)
T ss_pred cCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceE
Confidence 12 33445556666778999999999999888776555543
No 412
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=87.04 E-value=28 Score=32.97 Aligned_cols=180 Identities=14% Similarity=0.096 Sum_probs=102.0
Q ss_pred EEEEEECCCCCEEEEEeCCC--cEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcc
Q 012367 225 IWTLKFSPDGRYLASGGEDG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 302 (465)
Q Consensus 225 I~~l~fspdg~~LaSgs~Dg--~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (465)
.-.+.|..+|.++-|.|.-| .|+.+|+.+++.......+... |.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~----------------------------Fg------ 92 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY----------------------------FG------ 92 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT------------------------------E------
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc----------------------------cc------
Confidence 45788877888888888877 7888999887654332221110 00
Q ss_pred eeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCC
Q 012367 303 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 382 (465)
Q Consensus 303 ~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~ 382 (465)
.-+.-+.+.+..+.| .++++.+||..+-+.+..|.....=+.++. ++..|+.......|+++|..+-
T Consensus 93 EGit~~~d~l~qLTW----------k~~~~f~yd~~tl~~~~~~~y~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f 159 (264)
T PF05096_consen 93 EGITILGDKLYQLTW----------KEGTGFVYDPNTLKKIGTFPYPGEGWGLTS---DGKRLIMSDGSSRLYFLDPETF 159 (264)
T ss_dssp EEEEEETTEEEEEES----------SSSEEEEEETTTTEEEEEEE-SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-
T ss_pred eeEEEECCEEEEEEe----------cCCeEEEEccccceEEEEEecCCcceEEEc---CCCEEEEECCccceEEECCccc
Confidence 000112334444444 568899999999999999987777778874 5666666666788999998775
Q ss_pred eEEec---ccC---CCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCc---------ccccCCceeeEE
Q 012367 383 RVVDW---ADV---RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR---------KKTSGNKITGIQ 447 (465)
Q Consensus 383 ~~~~~---~~~---~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~---------~~~~~~~It~~~ 447 (465)
+.... ... -..++-+-|. +|...|=.=....|...|..++...- .+++.+- +.....-..|++
T Consensus 160 ~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~-~iDls~L~~~~~~~~~~~~~~dVLNGIA 237 (264)
T PF05096_consen 160 KEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVG-WIDLSGLRPEVGRDKSRQPDDDVLNGIA 237 (264)
T ss_dssp SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEE-EEE-HHHHHHHTSTTST--TTS-EEEEE
T ss_pred ceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEE-EEEhhHhhhcccccccccccCCeeEeEe
Confidence 44331 111 2245566665 55444444445666677777766532 2322211 111246789999
Q ss_pred EeecCC
Q 012367 448 GRISKN 453 (465)
Q Consensus 448 f~p~gs 453 (465)
+.|...
T Consensus 238 yd~~~~ 243 (264)
T PF05096_consen 238 YDPETD 243 (264)
T ss_dssp EETTTT
T ss_pred EeCCCC
Confidence 987643
No 413
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=86.31 E-value=13 Score=39.77 Aligned_cols=71 Identities=10% Similarity=0.216 Sum_probs=50.1
Q ss_pred ccccceEEEEec--CC-CEEEEEeCCCeEEEEeCC---------CCeEeEEe---cCC-CceEEEEEccCCCCEEEEEeC
Q 012367 307 GHKGDVLDLAWS--NS-NYLLSCSMDKTVRMWQVG---------CNQCLNVF---DHH-NYVTCVQFNPIDDNYFISGSI 370 (465)
Q Consensus 307 gh~~~V~~l~~s--~~-~~l~s~s~DgtV~lWD~~---------~~~~l~~~---~h~-~~V~~i~fsp~~~~~l~sgs~ 370 (465)
...+.|.++.|. |+ +.+++.+....|.++--. +-..++.+ .+. .+|.+..|.+ +|.+++..
T Consensus 70 ~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~s-- 146 (631)
T PF12234_consen 70 SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGS-- 146 (631)
T ss_pred cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEec-CCeEEEEe--
Confidence 356889999997 44 478899999999998542 11244444 243 6899999998 77666544
Q ss_pred CCcEEEEeCC
Q 012367 371 DGKVRIWGVC 380 (465)
Q Consensus 371 Dg~I~iwd~~ 380 (465)
++.+.|+|-.
T Consensus 147 GNqlfv~dk~ 156 (631)
T PF12234_consen 147 GNQLFVFDKW 156 (631)
T ss_pred CCEEEEECCC
Confidence 4678888753
No 414
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=86.14 E-value=8.8 Score=38.96 Aligned_cols=49 Identities=20% Similarity=0.103 Sum_probs=41.1
Q ss_pred ccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCcee
Q 012367 208 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAA 256 (465)
Q Consensus 208 ~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~ 256 (465)
...++.+...|......+.+|..+|++++.|+...=|.|.++|+.++..
T Consensus 293 ~~~~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v 341 (415)
T PF14655_consen 293 PAAPLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV 341 (415)
T ss_pred CCcccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh
Confidence 3455666677888888899999999999999988889999999987644
No 415
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=86.08 E-value=41 Score=34.05 Aligned_cols=105 Identities=13% Similarity=0.180 Sum_probs=63.4
Q ss_pred ccceEEEEecCCCEEEEEeCCCeEEEEeCCCCe-----EeEEecCC---CceEEEEEccCCCCEEEEEeCCCcEEEEeCC
Q 012367 309 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ-----CLNVFDHH---NYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 380 (465)
Q Consensus 309 ~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~-----~l~~~~h~---~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~ 380 (465)
...+..+.+.+++.++.++.+|.+.. ....+. ........ ..++.+.|.+ ++..+++| ..|.+.... .
T Consensus 280 ~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~-d~~~~a~G-~~G~v~~s~-D 355 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRS-KKEAWAAG-GSGILLRST-D 355 (398)
T ss_pred ccceeeeeEcCCCCEEEEeCCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcC-CCcEEEEE-CCCcEEEeC-C
Confidence 34577888888876666667776543 333343 22222222 3588999987 76666655 567666654 3
Q ss_pred CCeE-Eec---ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEE
Q 012367 381 EKRV-VDW---ADVRDVISAICYIPDGKGFIVGSITGTCHFY 418 (465)
Q Consensus 381 ~~~~-~~~---~~~~~~V~sv~~spdg~~l~sgs~dG~v~iw 418 (465)
.++. ... .........+.|.++++.+++| .+|.|.-|
T Consensus 356 ~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 356 GGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 3332 221 2345668899998877666665 67776544
No 416
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=86.06 E-value=40 Score=33.79 Aligned_cols=107 Identities=7% Similarity=0.059 Sum_probs=57.4
Q ss_pred CEEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEcc-CCCCEEEEEe----------------------CCCcEEE
Q 012367 321 NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNP-IDDNYFISGS----------------------IDGKVRI 376 (465)
Q Consensus 321 ~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp-~~~~~l~sgs----------------------~Dg~I~i 376 (465)
..++-......|+--|+.+.+....+. ....+-...|.. .++..++-.- ....|.-
T Consensus 93 ~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 93 RALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp SEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred CeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence 455444455677777887776555554 344444445532 1444432211 1233555
Q ss_pred EeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCC-----cEEEEEecCCceee
Q 012367 377 WGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG-----TCHFYKASGNDLKL 427 (465)
Q Consensus 377 wd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG-----~v~iwd~~~~~~~~ 427 (465)
.|+.+++......-..++..+.|+|....+++=+..| ..|||-++...-..
T Consensus 173 idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~ 228 (386)
T PF14583_consen 173 IDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV 228 (386)
T ss_dssp EETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---
T ss_pred EECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc
Confidence 6778887777777788899999999777777766544 24778776544433
No 417
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=85.44 E-value=28 Score=36.58 Aligned_cols=95 Identities=16% Similarity=0.246 Sum_probs=57.1
Q ss_pred EEEecCCC-EEEEEeCCCeEEEEeCCCC--eEeEEecCCCceEEEEEccCCCCEEEEEe-CCCcEEEEeCCCCeEE----
Q 012367 314 DLAWSNSN-YLLSCSMDKTVRMWQVGCN--QCLNVFDHHNYVTCVQFNPIDDNYFISGS-IDGKVRIWGVCEKRVV---- 385 (465)
Q Consensus 314 ~l~~s~~~-~l~s~s~DgtV~lWD~~~~--~~l~~~~h~~~V~~i~fsp~~~~~l~sgs-~Dg~I~iwd~~~~~~~---- 385 (465)
.+.|+|.. .|+.-.....-.+++++.. +....+...+.|.|.+|.+ ||+.|+.+- ..=.-+|||-..+.+.
T Consensus 117 GCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~-DG~RLVVAvGSsLHSyiWd~~qKtL~~Csf 195 (671)
T PF15390_consen 117 GCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTK-DGQRLVVAVGSSLHSYIWDSAQKTLHRCSF 195 (671)
T ss_pred cccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecC-cCCEEEEEeCCeEEEEEecCchhhhhhCCc
Confidence 46789875 3333333333345565433 3444557888999999999 777766553 3334679986544322
Q ss_pred -ecccCCCCeEEEEEeeCCCEEEEEE
Q 012367 386 -DWADVRDVISAICYIPDGKGFIVGS 410 (465)
Q Consensus 386 -~~~~~~~~V~sv~~spdg~~l~sgs 410 (465)
...+..+.|.++.-.-|. .+|+++
T Consensus 196 cPVFdv~~~Icsi~AT~ds-qVAvaT 220 (671)
T PF15390_consen 196 CPVFDVGGYICSIEATVDS-QVAVAT 220 (671)
T ss_pred ceeecCCCceEEEEEeccc-eEEEEe
Confidence 234556677777666554 445554
No 418
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.39 E-value=23 Score=32.22 Aligned_cols=169 Identities=18% Similarity=0.192 Sum_probs=85.2
Q ss_pred CCCEEEEEeCC--CcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeeecc--
Q 012367 233 DGRYLASGGED--GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGH-- 308 (465)
Q Consensus 233 dg~~LaSgs~D--g~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh-- 308 (465)
+|.++.+.|.- ..|++||+.+++........... ....+.... ........+.....|......+..+..|
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~---~FgEGit~~--gd~~y~LTw~egvaf~~d~~t~~~lg~~~y 129 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDT---VFGEGITKL--GDYFYQLTWKEGVAFKYDADTLEELGRFSY 129 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCcc---ccccceeec--cceEEEEEeccceeEEEChHHhhhhccccc
Confidence 56677777654 46999999987766543332100 000111000 0011112222222233322222222222
Q ss_pred ccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec---CCCc---eEEEEEccCCCCEEEEEeCCCcEEEEeCCCC
Q 012367 309 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---HHNY---VTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 382 (465)
Q Consensus 309 ~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~---h~~~---V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~ 382 (465)
.+.=+.++....+ |+.+....+++.-|.++...+.... ...+ ++-+.|- +|...+-.-.+..|...|..+|
T Consensus 130 ~GeGWgLt~d~~~-LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI~p~sG 206 (262)
T COG3823 130 EGEGWGLTSDDKN-LIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARIDPDSG 206 (262)
T ss_pred CCcceeeecCCcc-eEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEEcCCCC
Confidence 2344555533333 5555555677777776544433332 1112 2333443 5666666666777777788888
Q ss_pred eEEeccc-------------CCCCeEEEEEeeCC-CEEEEE
Q 012367 383 RVVDWAD-------------VRDVISAICYIPDG-KGFIVG 409 (465)
Q Consensus 383 ~~~~~~~-------------~~~~V~sv~~spdg-~~l~sg 409 (465)
+++.+.. +.+..+.+++.|++ +++++|
T Consensus 207 rV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 207 RVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 8776433 33457789999987 455555
No 419
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=84.51 E-value=25 Score=37.46 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=61.3
Q ss_pred CEEEEEeCC------CeEEEEeCCCCeEeEEecC---CCceEEEEEccCCCCEEEEEeCCCc-----EEEEeCCCCeEEe
Q 012367 321 NYLLSCSMD------KTVRMWQVGCNQCLNVFDH---HNYVTCVQFNPIDDNYFISGSIDGK-----VRIWGVCEKRVVD 386 (465)
Q Consensus 321 ~~l~s~s~D------gtV~lWD~~~~~~l~~~~h---~~~V~~i~fsp~~~~~l~sgs~Dg~-----I~iwd~~~~~~~~ 386 (465)
...+.|+.| .+|..||..++.-...-.. ........+ ++.+.+.||.|+. |..||..+.+...
T Consensus 429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~---~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~ 505 (571)
T KOG4441|consen 429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL---NGKIYVVGGFDGTSALSSVERYDPETNQWTM 505 (571)
T ss_pred EEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE---CCEEEEECCccCCCccceEEEEcCCCCceeE
Confidence 355666655 3578888877653322211 111112222 6788888887763 7789998887776
Q ss_pred cccCCCCeEEEEEee-CCCEEEEEEcCC-----cEEEEEecCCcee
Q 012367 387 WADVRDVISAICYIP-DGKGFIVGSITG-----TCHFYKASGNDLK 426 (465)
Q Consensus 387 ~~~~~~~V~sv~~sp-dg~~l~sgs~dG-----~v~iwd~~~~~~~ 426 (465)
..........+.... +++..++|+.|| +|-.||..+++..
T Consensus 506 v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 506 VAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred cccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 554444444433333 567788888876 4556666655543
No 420
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=84.13 E-value=2.5 Score=44.98 Aligned_cols=78 Identities=14% Similarity=0.330 Sum_probs=55.5
Q ss_pred EeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367 342 CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS 421 (465)
Q Consensus 342 ~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~ 421 (465)
|.+..+....+++++-+| .+.-++.++.||.|++|+....+...+.....+-..+.|...| |++.+.|.++.-|.-.
T Consensus 7 ~s~~~k~~e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 7 CSRDPKEDEFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWKED 83 (1636)
T ss_pred ccCCccccceeeeeeecC-CCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheeecc
Confidence 333344556788999999 9999999999999999998765544433334444556666554 7777888888888654
Q ss_pred C
Q 012367 422 G 422 (465)
Q Consensus 422 ~ 422 (465)
+
T Consensus 84 g 84 (1636)
T KOG3616|consen 84 G 84 (1636)
T ss_pred C
Confidence 3
No 421
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=83.88 E-value=5.6 Score=35.11 Aligned_cols=32 Identities=22% Similarity=0.382 Sum_probs=26.9
Q ss_pred CCeEEEEEeeCC------CEEEEEEcCCcEEEEEecCC
Q 012367 392 DVISAICYIPDG------KGFIVGSITGTCHFYKASGN 423 (465)
Q Consensus 392 ~~V~sv~~spdg------~~l~sgs~dG~v~iwd~~~~ 423 (465)
..|.+++|+|-| -.|++.+.+|.|.||....+
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 379999999965 36888999999999988755
No 422
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.87 E-value=11 Score=38.78 Aligned_cols=76 Identities=12% Similarity=0.078 Sum_probs=51.5
Q ss_pred ceEEEEEccCCCCEEEEEeCCCcEEEEe-----C----CCCeE-Ee--c---------ccCCCCeEEEEEeeCC---CEE
Q 012367 351 YVTCVQFNPIDDNYFISGSIDGKVRIWG-----V----CEKRV-VD--W---------ADVRDVISAICYIPDG---KGF 406 (465)
Q Consensus 351 ~V~~i~fsp~~~~~l~sgs~Dg~I~iwd-----~----~~~~~-~~--~---------~~~~~~V~sv~~spdg---~~l 406 (465)
.|..+..++ .|..++-.|.+|.+.++= - ..++. +. . ....-.+..++|+|+. ..|
T Consensus 105 eV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 467888889 888888888888766543 1 22211 10 1 1122336678999976 678
Q ss_pred EEEEcCCcEEEEEecCCceee
Q 012367 407 IVGSITGTCHFYKASGNDLKL 427 (465)
Q Consensus 407 ~sgs~dG~v~iwd~~~~~~~~ 427 (465)
+.-+.|..+|+||++..+-.+
T Consensus 184 ~iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred EEEecCcEEEEEecCCcchhh
Confidence 888999999999998765443
No 423
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=83.48 E-value=17 Score=38.33 Aligned_cols=105 Identities=20% Similarity=0.211 Sum_probs=69.2
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeEeEEecCCC--ceE---E-------EEEccCCCCEEEEEeCCCcEEEEeCCCCeEEec
Q 012367 320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN--YVT---C-------VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW 387 (465)
Q Consensus 320 ~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~--~V~---~-------i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~ 387 (465)
++.++.++.++.|.-.|..+|+.+..+.... .+. + +++ .+..++.++.|+.|.-.|..+++++-.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av---~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL---YDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE---ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 5678888888999999999999998875432 111 1 122 234677788899999999999988753
Q ss_pred ccCCC-----CeEEEEEeeCCCEEEEEEc------CCcEEEEEecCCceeee
Q 012367 388 ADVRD-----VISAICYIPDGKGFIVGSI------TGTCHFYKASGNDLKLE 428 (465)
Q Consensus 388 ~~~~~-----~V~sv~~spdg~~l~sgs~------dG~v~iwd~~~~~~~~~ 428 (465)
..... .+++--.--++ .+++++. +|.|..+|..++++.-.
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred cccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 32211 12211111144 4555543 68999999999988655
No 424
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=82.88 E-value=13 Score=37.05 Aligned_cols=90 Identities=17% Similarity=0.244 Sum_probs=45.6
Q ss_pred CCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCC----------------cEEEEeCCCCeEEecccCCC
Q 012367 329 DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG----------------KVRIWGVCEKRVVDWADVRD 392 (465)
Q Consensus 329 DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg----------------~I~iwd~~~~~~~~~~~~~~ 392 (465)
+..|.-+|+.++......... +...+.-++ ++++++-=+.|. .|+++++..+....+..|..
T Consensus 263 ~~~i~~~d~~t~~~~~~~~~p-~~~H~~ss~-Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~ 340 (386)
T PF14583_consen 263 DFWIAGYDPDTGERRRLMEMP-WCSHFMSSP-DGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDT 340 (386)
T ss_dssp -EEEEEE-TTT--EEEEEEE--SEEEEEE-T-TSSEEEEEE-------------------EEEEEETTTTEEEEEEE---
T ss_pred ceEEEeeCCCCCCceEEEeCC-ceeeeEEcC-CCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccC
Confidence 446777788877654333222 344555566 888876544442 46678887776543333321
Q ss_pred -----------CeEEEEEeeCCCEEEEEE-cCCcEEEEEe
Q 012367 393 -----------VISAICYIPDGKGFIVGS-ITGTCHFYKA 420 (465)
Q Consensus 393 -----------~V~sv~~spdg~~l~sgs-~dG~v~iwd~ 420 (465)
.=....|+|||+.++-.| ..|...||=+
T Consensus 341 sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 341 SWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp ----BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred cceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 124689999999866555 5788777754
No 425
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=82.35 E-value=59 Score=32.85 Aligned_cols=197 Identities=11% Similarity=0.110 Sum_probs=88.2
Q ss_pred cEEEEEECCCCCEEEEE-eCCC----cEEEEecCCceeeeeeecCCCC--cccccCCCeEEeccCCCCce--eEecCCce
Q 012367 224 CIWTLKFSPDGRYLASG-GEDG----VVRIWHVTSVAASCKSFTDDGG--FGSNAKEGKIKFGKKKSSHV--PVVIPDEV 294 (465)
Q Consensus 224 ~I~~l~fspdg~~LaSg-s~Dg----~V~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 294 (465)
.+...++||+|++||-+ +..| +|+|.|+.++......+..... +........+.......... ....+..+
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 44468999999988755 4444 5999999988665433221111 11111111111111000000 00001111
Q ss_pred eee--cCCc---ceeeeccccc--eEEEEecCCC-E-EEEEeCC---CeEEEEeCCCC-----eEeEEecCCCceEEEEE
Q 012367 295 FQI--EESP---LQELHGHKGD--VLDLAWSNSN-Y-LLSCSMD---KTVRMWQVGCN-----QCLNVFDHHNYVTCVQF 357 (465)
Q Consensus 295 ~~~--~~~~---~~~~~gh~~~--V~~l~~s~~~-~-l~s~s~D---gtV~lWD~~~~-----~~l~~~~h~~~V~~i~f 357 (465)
+.. .... ...+.+.... ...+..++++ + ++..... ..|.+.|+..+ ...........+....-
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 111 1111 1233333322 5677788875 4 3334333 34788888764 33333344444443333
Q ss_pred ccCCCCEEEEEeC---CCcEEEEeCCCCe----EEecccCCCCeEEEEEeeCCCEEEEEE-cCC--cEEEEEec
Q 012367 358 NPIDDNYFISGSI---DGKVRIWGVCEKR----VVDWADVRDVISAICYIPDGKGFIVGS-ITG--TCHFYKAS 421 (465)
Q Consensus 358 sp~~~~~l~sgs~---Dg~I~iwd~~~~~----~~~~~~~~~~V~sv~~spdg~~l~sgs-~dG--~v~iwd~~ 421 (465)
+. ++.+++.... .+.|...++.... ...+..+...+.-..+...+.+|+... .++ .|++|++.
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence 33 4444444332 3566667776543 123455555444444444455555544 444 56777777
No 426
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=82.34 E-value=18 Score=38.26 Aligned_cols=57 Identities=12% Similarity=0.133 Sum_probs=37.3
Q ss_pred CcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367 372 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 428 (465)
Q Consensus 372 g~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~ 428 (465)
|.|.-+|+.++++.-..........-...-.|..+++++.+|.++.+|..+++...+
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~ 497 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWK 497 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEE
Confidence 457778888887665333222211111222455777888899999999999988664
No 427
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=82.28 E-value=39 Score=33.24 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=21.3
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEe
Q 012367 225 IWTLKFSPDGRYLASGGEDGVVRIWH 250 (465)
Q Consensus 225 I~~l~fspdg~~LaSgs~Dg~V~iWd 250 (465)
-+.|+|.|+|++|++ -..|.|++++
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~ 28 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD 28 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe
Confidence 478999999987775 5599999999
No 428
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=82.05 E-value=20 Score=35.27 Aligned_cols=102 Identities=12% Similarity=0.160 Sum_probs=57.0
Q ss_pred ceEEEEecCCCEEEEEeCCCeEEEEeCCCCeE---eEEec-----CCCceEEEEEccC---CCCEEEEEeCC--------
Q 012367 311 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQC---LNVFD-----HHNYVTCVQFNPI---DDNYFISGSID-------- 371 (465)
Q Consensus 311 ~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~---l~~~~-----h~~~V~~i~fsp~---~~~~l~sgs~D-------- 371 (465)
..+.|+|.|++.++.+-..|.|++++ ..+.. +.... .......++++|. ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 45789999998777788899999999 44443 22221 3346789999992 24444444421
Q ss_pred CcEEEEeCCCC-------e-EEe-cc---cCCCCeEEEEEeeCCCEEEEEEcCC
Q 012367 372 GKVRIWGVCEK-------R-VVD-WA---DVRDVISAICYIPDGKGFIVGSITG 413 (465)
Q Consensus 372 g~I~iwd~~~~-------~-~~~-~~---~~~~~V~sv~~spdg~~l~sgs~dG 413 (465)
..|.-|..... + ++. .. ........+.|.|||.+.++.+..+
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 23333433322 1 221 11 2345567799999997666655433
No 429
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=81.85 E-value=32 Score=31.87 Aligned_cols=130 Identities=12% Similarity=0.135 Sum_probs=73.4
Q ss_pred eEEEEecCCCEEEEEeCC----------CeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEe--C
Q 012367 312 VLDLAWSNSNYLLSCSMD----------KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG--V 379 (465)
Q Consensus 312 V~~l~~s~~~~l~s~s~D----------gtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd--~ 379 (465)
.++-..+|+|....|.+. |.++.|-.. ++.-..+..-.--+.++|+.....+.++-+.+-.|.-|| .
T Consensus 111 ~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~ 189 (310)
T KOG4499|consen 111 LNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDC 189 (310)
T ss_pred cccCccCCCCceeeeeeccccccccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCC
Confidence 344455677655555442 334444332 222222222223356788763344555666677787787 5
Q ss_pred CCCeEE------eccc----CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEe
Q 012367 380 CEKRVV------DWAD----VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGR 449 (465)
Q Consensus 380 ~~~~~~------~~~~----~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~ 449 (465)
.++.+. .+.. ..-..-.++...+|+..++.-..|+|.-.|..++++.++ +.+. ..+||++.|-
T Consensus 190 ~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~e-iklP------t~qitsccFg 262 (310)
T KOG4499|consen 190 PTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLE-IKLP------TPQITSCCFG 262 (310)
T ss_pred CcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEE-EEcC------CCceEEEEec
Confidence 565432 1211 111233455667888888888889999999999998665 3333 2467777664
No 430
>PHA03098 kelch-like protein; Provisional
Probab=81.71 E-value=34 Score=36.09 Aligned_cols=104 Identities=16% Similarity=0.302 Sum_probs=55.6
Q ss_pred CCCEEEEEeCC------CeEEEEeCCCCeEeEEec--CCCceEEEEEccCCCCEEEEEeCC--------CcEEEEeCCCC
Q 012367 319 NSNYLLSCSMD------KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID--------GKVRIWGVCEK 382 (465)
Q Consensus 319 ~~~~l~s~s~D------gtV~lWD~~~~~~l~~~~--h~~~V~~i~fsp~~~~~l~sgs~D--------g~I~iwd~~~~ 382 (465)
.+..++.|+.+ ..+..||+.+++-...-. ....-.+++.. ++.+++.|+.+ ..+.+||..+.
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYH--DGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEE--CCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 34455556532 458888987664322111 11111122222 56677777653 23889999887
Q ss_pred eEEecccCC--CCeEEEEEeeCCCEEEEEEcC-----CcEEEEEecCCce
Q 012367 383 RVVDWADVR--DVISAICYIPDGKGFIVGSIT-----GTCHFYKASGNDL 425 (465)
Q Consensus 383 ~~~~~~~~~--~~V~sv~~spdg~~l~sgs~d-----G~v~iwd~~~~~~ 425 (465)
+........ ..-.++ ...+++.++.|+.+ ..+.+||..++..
T Consensus 467 ~W~~~~~~~~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 467 KWTELSSLNFPRINASL-CIFNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred ceeeCCCCCcccccceE-EEECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 655432211 111112 22367777888764 4678888877644
No 431
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=81.69 E-value=0.21 Score=50.28 Aligned_cols=139 Identities=12% Similarity=0.188 Sum_probs=95.4
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (465)
|-..-....|-|.+.-++.++.+..|..||-......
T Consensus 33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~l------------------------------------------- 69 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVIL------------------------------------------- 69 (615)
T ss_pred hccccceeeEecCCCceehhhhhhHHHhhhhhcceec-------------------------------------------
Confidence 3333345677888878999999999999986542110
Q ss_pred cceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeE-Eec--CCCceEEEEEccCCCCEEEEEeCCCcEE
Q 012367 301 PLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLN-VFD--HHNYVTCVQFNPIDDNYFISGSIDGKVR 375 (465)
Q Consensus 301 ~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~-~~~--h~~~V~~i~fsp~~~~~l~sgs~Dg~I~ 375 (465)
-...++...+++|..++ .++.+-..+.+.+||+.+..... .++ |.... +.|++ ....++.|-..|.++
T Consensus 70 ----e~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl--l~wsK-g~~el~ig~~~gn~v 142 (615)
T KOG2247|consen 70 ----ELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL--LAWSK-GTPELVIGNNAGNIV 142 (615)
T ss_pred ----ccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH--Hhhcc-CCccccccccccceE
Confidence 00123455677887643 56667777899999997643221 122 33222 67888 777888888899999
Q ss_pred EEeCCCCeEEeccc-CCCCeEEEEEeeCCCEEEEE
Q 012367 376 IWGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVG 409 (465)
Q Consensus 376 iwd~~~~~~~~~~~-~~~~V~sv~~spdg~~l~sg 409 (465)
|++..+.+.+...+ |...++.++|.+.+..+..+
T Consensus 143 iynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d 177 (615)
T KOG2247|consen 143 IYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD 177 (615)
T ss_pred EEeccchhhhhhhcccccceeEEEecccceeeecC
Confidence 99998877666556 99999999999987655443
No 432
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=81.07 E-value=12 Score=40.58 Aligned_cols=129 Identities=16% Similarity=0.254 Sum_probs=77.0
Q ss_pred EEEEEECC--CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcc
Q 012367 225 IWTLKFSP--DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 302 (465)
Q Consensus 225 I~~l~fsp--dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (465)
|+-|.... +...|+.|..||.|.+|.+.+............. .... ....+|.
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~---------------~~~~----------r~~i~P~ 157 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDND---------------SGFS----------RLKIKPF 157 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccc---------------cccc----------cccCCCC
Confidence 66666654 3348999999999999987642111100000000 0000 0011233
Q ss_pred eeeeccccceEEEEec--CC-CEEEEEeCCCeEEEEeCCC--Ce--EeEEecCCCceEEEEEccCC--CC---EEEEEeC
Q 012367 303 QELHGHKGDVLDLAWS--NS-NYLLSCSMDKTVRMWQVGC--NQ--CLNVFDHHNYVTCVQFNPID--DN---YFISGSI 370 (465)
Q Consensus 303 ~~~~gh~~~V~~l~~s--~~-~~l~s~s~DgtV~lWD~~~--~~--~l~~~~h~~~V~~i~fsp~~--~~---~l~sgs~ 370 (465)
..+. ....+++++++ .. .++|.++....|.||-... .+ ......+...|.+|+|.+.+ +. ++++++.
T Consensus 158 f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI 236 (717)
T PF08728_consen 158 FHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDI 236 (717)
T ss_pred eEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEec
Confidence 3332 23478899987 44 4777777777788875433 11 11233477789999998833 22 7888999
Q ss_pred CCcEEEEeC
Q 012367 371 DGKVRIWGV 379 (465)
Q Consensus 371 Dg~I~iwd~ 379 (465)
.|.+.+|++
T Consensus 237 ~G~v~~~~I 245 (717)
T PF08728_consen 237 SGEVWTFKI 245 (717)
T ss_pred cCcEEEEEE
Confidence 999999888
No 433
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=80.65 E-value=1e+02 Score=34.62 Aligned_cols=108 Identities=12% Similarity=0.199 Sum_probs=75.3
Q ss_pred cceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCC--CeEEe
Q 012367 310 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE--KRVVD 386 (465)
Q Consensus 310 ~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~--~~~~~ 386 (465)
+.|.++..-++.+| ++-...|++|+..+.+.++.- .+...+..+...- .++.++.|..=+.+.+.-.+. +....
T Consensus 830 Gav~aL~~fngkll--A~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v-~gdeI~VgDlm~Sitll~y~~~eg~f~e 906 (1096)
T KOG1897|consen 830 GAVYALVEFNGKLL--AGINQSVRLYEWTTERELRIECNISNPIIALDLQV-KGDEIAVGDLMRSITLLQYKGDEGNFEE 906 (1096)
T ss_pred cceeehhhhCCeEE--EecCcEEEEEEccccceehhhhcccCCeEEEEEEe-cCcEEEEeeccceEEEEEEeccCCceEE
Confidence 45555554444333 345578999999988666655 5778888888877 899999998888777665543 33544
Q ss_pred --cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367 387 --WADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS 421 (465)
Q Consensus 387 --~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~ 421 (465)
-.-+..+++++.+-.+ ..++.+..+|.+.+-...
T Consensus 907 vArD~~p~Wmtaveil~~-d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 907 VARDYNPNWMTAVEILDD-DTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred eehhhCccceeeEEEecC-ceEEeecccccEEEEEec
Confidence 3347788888887744 456666778888877654
No 434
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.48 E-value=33 Score=39.15 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=28.3
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEecCCce
Q 012367 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA 255 (465)
Q Consensus 222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~ 255 (465)
......++|+|.-.++|.|...|.|+++-....+
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve 68 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVE 68 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecccceE
Confidence 3356679999999999999999999999876543
No 435
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.20 E-value=18 Score=41.32 Aligned_cols=72 Identities=22% Similarity=0.429 Sum_probs=52.7
Q ss_pred CCceEEEEEccCCCCEEEEEeCCCcEEEEeCC----C-------Ce--------------EEecc-cCCCCeEEEEEeeC
Q 012367 349 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC----E-------KR--------------VVDWA-DVRDVISAICYIPD 402 (465)
Q Consensus 349 ~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~----~-------~~--------------~~~~~-~~~~~V~sv~~spd 402 (465)
+..|+||.... +|+.|++|- || .+|.+. . .+ +.... .+.++|..+.....
T Consensus 178 g~~V~~I~~t~-nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 178 GVSVNCITYTE-NGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred CceEEEEEecc-CCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 55789999666 899888876 45 555541 1 00 11223 45678999999988
Q ss_pred CCEEEEEEcCCcEEEEEecCCc
Q 012367 403 GKGFIVGSITGTCHFYKASGND 424 (465)
Q Consensus 403 g~~l~sgs~dG~v~iwd~~~~~ 424 (465)
.+.+.+-+..|+|.+|++.++.
T Consensus 254 R~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred cceeeeeccCceEEEEEccCCC
Confidence 8999999999999999998743
No 436
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=79.96 E-value=10 Score=41.41 Aligned_cols=91 Identities=16% Similarity=0.291 Sum_probs=52.9
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEecCCc-eeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcc
Q 012367 224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSV-AASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 302 (465)
Q Consensus 224 ~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (465)
.|..|.++|+|++||-.|..|.+.+ .+... ..... +. .......+- .+.+. ..+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~-~~-----------------~g~~~i~Cr-----t~~v~-~~~ 140 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGE-FE-----------------DGKKEINCR-----TVPVD-ERF 140 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEE-EeccccCcccc-cc-----------------CCCcceeEE-----EEEec-hhh
Confidence 5899999999999999999775444 33220 00000 00 000000000 00000 001
Q ss_pred eeeeccccceEEEEecCC----CEEEEEeCCCeEEEEeCCCC
Q 012367 303 QELHGHKGDVLDLAWSNS----NYLLSCSMDKTVRMWQVGCN 340 (465)
Q Consensus 303 ~~~~gh~~~V~~l~~s~~----~~l~s~s~DgtV~lWD~~~~ 340 (465)
. ...+...|..+.|+|. ..|+.-..|+++|+||+...
T Consensus 141 ~-~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 141 F-TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred c-cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 1 1235578999999984 48888899999999999653
No 437
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=79.74 E-value=49 Score=32.14 Aligned_cols=112 Identities=17% Similarity=0.259 Sum_probs=58.8
Q ss_pred cccceEEEEecCCCEEEEEeCCCeE-EEEeCCCC-eEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCC-CeE
Q 012367 308 HKGDVLDLAWSNSNYLLSCSMDKTV-RMWQVGCN-QCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRV 384 (465)
Q Consensus 308 h~~~V~~l~~s~~~~l~s~s~DgtV-~lWD~~~~-~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~-~~~ 384 (465)
-.+.+..+..++++.++..+..|.+ .-||.... -..........|..+.|.| ++.+.+.+ ..|.|+.=+... ...
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDGET 220 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEEe-CCcEEEEccCCCCccc
Confidence 3467788888888755555555554 67876533 2333334667899999999 77776654 788888887222 111
Q ss_pred E-----ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367 385 V-----DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN 423 (465)
Q Consensus 385 ~-----~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~ 423 (465)
. ......-.+..++|.+++...++| ..|.+ +...+.+
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~g-g~G~l-~~S~DgG 262 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVG-GSGTL-LVSTDGG 262 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEE-STT-E-EEESSTT
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEe-CCccE-EEeCCCC
Confidence 1 111223348899999987766655 45554 3444444
No 438
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=77.89 E-value=73 Score=31.22 Aligned_cols=143 Identities=13% Similarity=0.232 Sum_probs=84.6
Q ss_pred cceEEEEecC-CCEEEEEeCCCe------EEEEeCCC--C--eEeEE-----e-cCCC--------ceEEEEEccCCCCE
Q 012367 310 GDVLDLAWSN-SNYLLSCSMDKT------VRMWQVGC--N--QCLNV-----F-DHHN--------YVTCVQFNPIDDNY 364 (465)
Q Consensus 310 ~~V~~l~~s~-~~~l~s~s~Dgt------V~lWD~~~--~--~~l~~-----~-~h~~--------~V~~i~fsp~~~~~ 364 (465)
+.+..|.+.+ ++.+++.|.++. +...++.. + ..+.. + ...+ ....|++.+ ++.+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DGSF 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CCCE
Confidence 5667888884 567777788877 65555543 1 11111 1 1111 345788855 8888
Q ss_pred EEEEeCC------CcEEEEeCCCCeEEe-------c---------ccCCCCeEEEEEeeCCCEEEEEEc-----CC--c-
Q 012367 365 FISGSID------GKVRIWGVCEKRVVD-------W---------ADVRDVISAICYIPDGKGFIVGSI-----TG--T- 414 (465)
Q Consensus 365 l~sgs~D------g~I~iwd~~~~~~~~-------~---------~~~~~~V~sv~~spdg~~l~sgs~-----dG--~- 414 (465)
+++.=.+ ..|+.++.. +++.. + ...+...-+++++|+|+.|+++.. |+ .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 8887777 788888866 43321 1 123456889999999997777654 22 1
Q ss_pred ------EEEEEecCCc--eeeeEeeecCccc---ccCCceeeEEEeecCCc
Q 012367 415 ------CHFYKASGND--LKLEKVDFHDRKK---TSGNKITGIQGRISKNY 454 (465)
Q Consensus 415 ------v~iwd~~~~~--~~~~~~~~~~~~~---~~~~~It~~~f~p~gs~ 454 (465)
++++...... ....++.+.-... .....|+.+...+++.+
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~l 228 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRL 228 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcE
Confidence 5565554332 2223333332211 14578888888888764
No 439
>PHA02713 hypothetical protein; Provisional
Probab=77.43 E-value=26 Score=37.28 Aligned_cols=105 Identities=12% Similarity=0.195 Sum_probs=58.1
Q ss_pred CCCEEEEEeCC------CeEEEEeCCCCeEeEEec--CC-CceEEEEEccCCCCEEEEEeCCC-----cEEEEeCCCCeE
Q 012367 319 NSNYLLSCSMD------KTVRMWQVGCNQCLNVFD--HH-NYVTCVQFNPIDDNYFISGSIDG-----KVRIWGVCEKRV 384 (465)
Q Consensus 319 ~~~~l~s~s~D------gtV~lWD~~~~~~l~~~~--h~-~~V~~i~fsp~~~~~l~sgs~Dg-----~I~iwd~~~~~~ 384 (465)
.+..++.|+.+ .+|..||..++.-...-. .. .....+.+ ++.+.+.||.++ .+..||..+...
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~---~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI---DDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE---CCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 33455556543 357788887764221111 11 11222222 678888888764 488899888765
Q ss_pred EecccCCCCeEEE-EEeeCCCEEEEEEcCC-----------------------cEEEEEecCCcee
Q 012367 385 VDWADVRDVISAI-CYIPDGKGFIVGSITG-----------------------TCHFYKASGNDLK 426 (465)
Q Consensus 385 ~~~~~~~~~V~sv-~~spdg~~l~sgs~dG-----------------------~v~iwd~~~~~~~ 426 (465)
............. +..-+|+..+.|+.++ .+..||..+++..
T Consensus 380 ~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~ 445 (557)
T PHA02713 380 KMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWE 445 (557)
T ss_pred EECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEe
Confidence 5433322221111 1123688888887653 4777888776553
No 440
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=76.91 E-value=91 Score=33.65 Aligned_cols=162 Identities=14% Similarity=0.163 Sum_probs=79.4
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCC---CcccccCCCeEEeccCCCCceeEe-c-CC----
Q 012367 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG---GFGSNAKEGKIKFGKKKSSHVPVV-I-PD---- 292 (465)
Q Consensus 222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~-~~---- 292 (465)
.+.|-.|+|.++++.++..-..|.|.+||............... .............. .......+. . .+
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~-~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELE-NGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccc-cCCceEEEEEEcCCCcEE
Confidence 56789999999999999999999999999932211111000000 00000000000000 001111111 1 00
Q ss_pred -ceeee--cCCcceeeec---cccceEEEEec-CCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCc-----eEEEEEccC
Q 012367 293 -EVFQI--EESPLQELHG---HKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY-----VTCVQFNPI 360 (465)
Q Consensus 293 -~~~~~--~~~~~~~~~g---h~~~V~~l~~s-~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~-----V~~i~fsp~ 360 (465)
+++.+ ...++.++.. +........|. ..|.|.-- .+++|.+|.+.+.+..+++.-..- -.-+.+.|.
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~ 286 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPP 286 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEeecC
Confidence 12223 3333444431 12222222332 24544433 778999999988877777642211 112233333
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEe
Q 012367 361 DDNYFISGSIDGKVRIWGVCEKRVVD 386 (465)
Q Consensus 361 ~~~~l~sgs~Dg~I~iwd~~~~~~~~ 386 (465)
..+.++-+. +++|++.|+.-..++.
T Consensus 287 s~nRvLLs~-~nkIyLld~~~~siLs 311 (670)
T PF10395_consen 287 SPNRVLLSV-NNKIYLLDLKFESILS 311 (670)
T ss_pred CCCeEEEEc-CCEEEEEeehhhhhhh
Confidence 444444433 6899999997655544
No 441
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=75.08 E-value=2.6 Score=45.78 Aligned_cols=21 Identities=19% Similarity=0.493 Sum_probs=14.6
Q ss_pred CCCEEEEEeCCCcEEEEecCC
Q 012367 233 DGRYLASGGEDGVVRIWHVTS 253 (465)
Q Consensus 233 dg~~LaSgs~Dg~V~iWd~~~ 253 (465)
+.-++..+-.++.|++.++..
T Consensus 194 ~~~~ic~~~~~~~i~lL~~~r 214 (1283)
T KOG1916|consen 194 NKVYICYGLKGGEIRLLNINR 214 (1283)
T ss_pred ccceeeeccCCCceeEeeech
Confidence 445777777778887776654
No 442
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.90 E-value=35 Score=32.56 Aligned_cols=96 Identities=15% Similarity=0.219 Sum_probs=63.6
Q ss_pred EEEecCC--CEEEEEeCCCe-EEEEeCCCCeEeEEec---CCCceEEEEEccCCCCEEEEEeCC-----CcEEEEeCCCC
Q 012367 314 DLAWSNS--NYLLSCSMDKT-VRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEK 382 (465)
Q Consensus 314 ~l~~s~~--~~l~s~s~Dgt-V~lWD~~~~~~l~~~~---h~~~V~~i~fsp~~~~~l~sgs~D-----g~I~iwd~~~~ 382 (465)
.|+++|. .-++.+-.-|+ ..++|....+...+.. ....--.=+|+| ++.+|...-.| |.|-|||.+.+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecccc
Confidence 4556653 23444444444 5678887776555442 111222337999 99999876544 78999999853
Q ss_pred --eEEecccCCCCeEEEEEeeCCCEEEEEE
Q 012367 383 --RVVDWADVRDVISAICYIPDGKGFIVGS 410 (465)
Q Consensus 383 --~~~~~~~~~~~V~sv~~spdg~~l~sgs 410 (465)
++-.+..|.-....+.|.+||+.++++.
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeC
Confidence 3445777877888999999999988864
No 443
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=74.80 E-value=1.4e+02 Score=33.05 Aligned_cols=68 Identities=9% Similarity=0.032 Sum_probs=49.2
Q ss_pred CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecc----cCC----------------CCeEEEEEeeCCCEEE
Q 012367 348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA----DVR----------------DVISAICYIPDGKGFI 407 (465)
Q Consensus 348 h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~----~~~----------------~~V~sv~~spdg~~l~ 407 (465)
....|.+|+... -+.+++..-.||+|.++|..+-+.+... ... ..+..++|+|.+..++
T Consensus 258 ~~~~V~si~~~~-~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v 336 (753)
T PF11635_consen 258 LNKRVVSITSPE-LDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLV 336 (753)
T ss_pred cCCeEEEEEecc-cCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEE
Confidence 345677887776 6778888999999999998765433222 111 1234578999999999
Q ss_pred EEEcCCcEE
Q 012367 408 VGSITGTCH 416 (465)
Q Consensus 408 sgs~dG~v~ 416 (465)
.-..+|.+.
T Consensus 337 ~~~~~~~~~ 345 (753)
T PF11635_consen 337 QIDEDGKTK 345 (753)
T ss_pred EEecCCCce
Confidence 999999866
No 444
>PHA02790 Kelch-like protein; Provisional
Probab=74.33 E-value=97 Score=32.24 Aligned_cols=100 Identities=12% Similarity=0.043 Sum_probs=52.8
Q ss_pred CCEEEEEeCC---CeEEEEeCCCCeEeEE--ecCCC-ceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCC-
Q 012367 320 SNYLLSCSMD---KTVRMWQVGCNQCLNV--FDHHN-YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRD- 392 (465)
Q Consensus 320 ~~~l~s~s~D---gtV~lWD~~~~~~l~~--~~h~~-~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~- 392 (465)
+...+.|+.+ .++..||..+++=... ..... ....+.+ ++.+.+.|+ .+-+||..+.+.........
T Consensus 363 g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~---~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~ 436 (480)
T PHA02790 363 NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF---GRRLFLVGR---NAEFYCESSNTWTLIDDPIYP 436 (480)
T ss_pred CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE---CCEEEEECC---ceEEecCCCCcEeEcCCCCCC
Confidence 3445555544 3477888876542221 11111 1122222 567777764 57889998876654332211
Q ss_pred CeEEEEEeeCCCEEEEEEcC-----CcEEEEEecCCce
Q 012367 393 VISAICYIPDGKGFIVGSIT-----GTCHFYKASGNDL 425 (465)
Q Consensus 393 ~V~sv~~spdg~~l~sgs~d-----G~v~iwd~~~~~~ 425 (465)
...+-+..-+|+..++|+.+ ..+..||..+++.
T Consensus 437 r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 437 RDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred ccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 11111223377888888864 3566777776543
No 445
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=74.11 E-value=1.2e+02 Score=33.59 Aligned_cols=67 Identities=13% Similarity=0.180 Sum_probs=47.0
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceE-------------EEEEccC-CCCEEEEEeC----------CCcEE
Q 012367 320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVT-------------CVQFNPI-DDNYFISGSI----------DGKVR 375 (465)
Q Consensus 320 ~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~-------------~i~fsp~-~~~~l~sgs~----------Dg~I~ 375 (465)
++.++.++.|+.+.-.|..+|+.+..|..++.|. .+.-.|. .+..++.|+. +|.|+
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence 3578888899999999999999998886544431 1111110 2345666643 68899
Q ss_pred EEeCCCCeEEe
Q 012367 376 IWGVCEKRVVD 386 (465)
Q Consensus 376 iwd~~~~~~~~ 386 (465)
-+|..+++++-
T Consensus 340 A~Da~TGkl~W 350 (764)
T TIGR03074 340 AFDVNTGALVW 350 (764)
T ss_pred EEECCCCcEee
Confidence 99999998764
No 446
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=73.58 E-value=91 Score=30.21 Aligned_cols=112 Identities=14% Similarity=0.213 Sum_probs=67.4
Q ss_pred ceEEEEecCCC-EEEEEeCCCeEEEEeCC------CCeE-eEEec------CCCceEEEEEccCCCCE------------
Q 012367 311 DVLDLAWSNSN-YLLSCSMDKTVRMWQVG------CNQC-LNVFD------HHNYVTCVQFNPIDDNY------------ 364 (465)
Q Consensus 311 ~V~~l~~s~~~-~l~s~s~DgtV~lWD~~------~~~~-l~~~~------h~~~V~~i~fsp~~~~~------------ 364 (465)
.-+.|+++|.+ +.++...-++..+||.. ..+. +-.+. .....+.+.|+. ...+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccccee
Confidence 45688999876 66777777899999986 2222 22222 234788999986 3333
Q ss_pred EEEEeCCCcEEEEeCCCC------eEEeccc-CCCCe-EEEEEeeC--CCEEEEEE-cCCcEEEEEecCC
Q 012367 365 FISGSIDGKVRIWGVCEK------RVVDWAD-VRDVI-SAICYIPD--GKGFIVGS-ITGTCHFYKASGN 423 (465)
Q Consensus 365 l~sgs~Dg~I~iwd~~~~------~~~~~~~-~~~~V-~sv~~spd--g~~l~sgs-~dG~v~iwd~~~~ 423 (465)
|+.++.||+|.-|...-. ..+.... ....| ..+++.+. +.+|..+. ..|+|.+||-.=.
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~ 172 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR 172 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc
Confidence 577788899999985221 1222211 12222 34555433 45555554 4788998886533
No 447
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=72.82 E-value=1.6e+02 Score=32.73 Aligned_cols=138 Identities=11% Similarity=0.124 Sum_probs=85.1
Q ss_pred cccceEEEEec---C--C--CEEEEEeCCCeEEEEeC------CC---------CeEeEEec----CCCceEEEEEccCC
Q 012367 308 HKGDVLDLAWS---N--S--NYLLSCSMDKTVRMWQV------GC---------NQCLNVFD----HHNYVTCVQFNPID 361 (465)
Q Consensus 308 h~~~V~~l~~s---~--~--~~l~s~s~DgtV~lWD~------~~---------~~~l~~~~----h~~~V~~i~fsp~~ 361 (465)
-..+|..|+|. . + ..++..-....+.|+.. .. ..++..+. ...+...++|+|.+
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 45688888887 2 1 12444444555666661 11 12344443 23467899999988
Q ss_pred CCEEEEEeCCCcEEEEeCCCC------eEEecccCC----------CCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 362 DNYFISGSIDGKVRIWGVCEK------RVVDWADVR----------DVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 362 ~~~l~sgs~Dg~I~iwd~~~~------~~~~~~~~~----------~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
...||.....|...||++... .......+. +.-..+.|.++...|++++.. .+.++|+.+...
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~d~~~~~~ 236 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLIDFESNWQ 236 (765)
T ss_pred cceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-ceEEEECCCCCc
Confidence 899999999999999999211 111111111 223478899888888887655 678999987655
Q ss_pred eeeEeeecCcccccCCceeeEEEeec
Q 012367 426 KLEKVDFHDRKKTSGNKITGIQGRIS 451 (465)
Q Consensus 426 ~~~~~~~~~~~~~~~~~It~~~f~p~ 451 (465)
... +.. ......|-+++-+|.
T Consensus 237 ~~~-l~~----~~~~~~IlDv~~~~~ 257 (765)
T PF10214_consen 237 TEY-LVT----AKTWSWILDVKRSPD 257 (765)
T ss_pred cch-hcc----CCChhheeeEEecCC
Confidence 321 111 113356777777766
No 448
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=72.79 E-value=43 Score=28.18 Aligned_cols=70 Identities=17% Similarity=0.244 Sum_probs=47.0
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEeCCCC--------eEEecccCCCCeEEEEEee-----CCCEEEEEEcCCcEEEEEe
Q 012367 354 CVQFNPIDDNYFISGSIDGKVRIWGVCEK--------RVVDWADVRDVISAICYIP-----DGKGFIVGSITGTCHFYKA 420 (465)
Q Consensus 354 ~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~--------~~~~~~~~~~~V~sv~~sp-----dg~~l~sgs~dG~v~iwd~ 420 (465)
.-.|.. ...-|+.+...|+|.|++.... ..+.+......|++++-.| +...|+.|+.. ++..||+
T Consensus 3 iGkfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t-~llaYDV 80 (136)
T PF14781_consen 3 IGKFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDV 80 (136)
T ss_pred EEEeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEc
Confidence 345555 4446777788899999987532 2344555677788887555 34577777755 6789999
Q ss_pred cCCce
Q 012367 421 SGNDL 425 (465)
Q Consensus 421 ~~~~~ 425 (465)
..+.-
T Consensus 81 ~~N~d 85 (136)
T PF14781_consen 81 ENNSD 85 (136)
T ss_pred ccCch
Confidence 87654
No 449
>PRK10115 protease 2; Provisional
Probab=72.25 E-value=1.6e+02 Score=32.35 Aligned_cols=32 Identities=13% Similarity=0.126 Sum_probs=21.0
Q ss_pred CcEEEEEECCCCCEEEEEeCC-----CcEEEEecCCc
Q 012367 223 GCIWTLKFSPDGRYLASGGED-----GVVRIWHVTSV 254 (465)
Q Consensus 223 ~~I~~l~fspdg~~LaSgs~D-----g~V~iWd~~~~ 254 (465)
-.+..+.+||+|++||-+... ..|++-|+.++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg 163 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETG 163 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCC
Confidence 346678999999988765332 24666666543
No 450
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.67 E-value=64 Score=34.96 Aligned_cols=45 Identities=22% Similarity=0.490 Sum_probs=35.5
Q ss_pred eeeecCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCC
Q 012367 294 VFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVG 338 (465)
Q Consensus 294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~ 338 (465)
+|.+.+.++..+.-..+.+..+-|+.+..|+....||+|.+|++.
T Consensus 68 If~~sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 68 IFNISGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLL 112 (829)
T ss_pred EEeccccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecc
Confidence 445555666555554558899999999999999999999999985
No 451
>PRK13684 Ycf48-like protein; Provisional
Probab=71.43 E-value=95 Score=30.55 Aligned_cols=104 Identities=16% Similarity=0.191 Sum_probs=61.0
Q ss_pred ccceEEEEecCCCEEEEEeCCCeEEE-EeCCCCeEeEEe--cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 012367 309 KGDVLDLAWSNSNYLLSCSMDKTVRM-WQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 385 (465)
Q Consensus 309 ~~~V~~l~~s~~~~l~s~s~DgtV~l-WD~~~~~~l~~~--~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~ 385 (465)
.+.+.++.+.+++.++..+..|.+.. +|-. ++.-... .....++++.+.| +++.++.|. .|.+++=....+..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~g-g~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg~-~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPG-QTAWTPHQRNSSRRLQSMGFQP-DGNLWMLAR-GGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCCC-CCeEEEeeCCCcccceeeeEcC-CCCEEEEec-CCEEEEccCCCCCcc
Confidence 35678888888886666666676543 2222 2222222 2345789999999 788777654 576653233343322
Q ss_pred eccc-----CCCCeEEEEEeeCCCEEEEEEcCCcEE
Q 012367 386 DWAD-----VRDVISAICYIPDGKGFIVGSITGTCH 416 (465)
Q Consensus 386 ~~~~-----~~~~V~sv~~spdg~~l~sgs~dG~v~ 416 (465)
.... ....+.++.+.|++..+++ +.+|.+.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~ 283 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL 283 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEE-cCCCeEE
Confidence 2111 2235788999998875554 4677654
No 452
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=71.02 E-value=56 Score=33.25 Aligned_cols=52 Identities=15% Similarity=0.148 Sum_probs=38.6
Q ss_pred CceEEEEEccC----------CCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEee
Q 012367 350 NYVTCVQFNPI----------DDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP 401 (465)
Q Consensus 350 ~~V~~i~fsp~----------~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~sp 401 (465)
..|+++.+-|. +...++.|-.+|.|++|.-....+....-|.++|..+....
T Consensus 57 e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 57 ECITSILCLPLSSQKRSTGGPDWTCIAVGTSSGYVRFYTENGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred CEEEEEEEEEeecccccCCCCCcEEEEEEecccEEEEEeccchHHHHHhcCccceEEEEecc
Confidence 47777776653 46789999999999999975544444556788888887764
No 453
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=70.95 E-value=15 Score=23.09 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=20.4
Q ss_pred cCCCCeEEEEEeeCCCEEEEEEc-C--CcEEEE
Q 012367 389 DVRDVISAICYIPDGKGFIVGSI-T--GTCHFY 418 (465)
Q Consensus 389 ~~~~~V~sv~~spdg~~l~sgs~-d--G~v~iw 418 (465)
.....-...+|+|||+.|+-.+. + |...||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34456788999999998776665 4 666666
No 454
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=70.21 E-value=1.3e+02 Score=30.65 Aligned_cols=104 Identities=13% Similarity=0.139 Sum_probs=65.3
Q ss_pred CEEEEEeCCCeEEEEeCCCCe-----EeEEecCCCceEEEEEcc---CCCCEEEEEeCCCcEEEEeCCC--Ce-------
Q 012367 321 NYLLSCSMDKTVRMWQVGCNQ-----CLNVFDHHNYVTCVQFNP---IDDNYFISGSIDGKVRIWGVCE--KR------- 383 (465)
Q Consensus 321 ~~l~s~s~DgtV~lWD~~~~~-----~l~~~~h~~~V~~i~fsp---~~~~~l~sgs~Dg~I~iwd~~~--~~------- 383 (465)
..++.||..|.++||+...+. .+-..+-..+|..+..-+ ..+...++.=.-+++.||.+.. +.
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~ 117 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQY 117 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcEE
Confidence 489999999999999985433 444456777888877542 2233333334467788887721 11
Q ss_pred -EEecccC--CCCeEEEEEeeC-----CCEEEEEEcCCcEEEEEecCCc
Q 012367 384 -VVDWADV--RDVISAICYIPD-----GKGFIVGSITGTCHFYKASGND 424 (465)
Q Consensus 384 -~~~~~~~--~~~V~sv~~spd-----g~~l~sgs~dG~v~iwd~~~~~ 424 (465)
+.....| ......+++-|= ..++++=+.||.+.||+-+.-.
T Consensus 118 ~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~ 166 (418)
T PF14727_consen 118 QLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA 166 (418)
T ss_pred EEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE
Confidence 1112222 333445555552 2578999999999999976543
No 455
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=69.34 E-value=24 Score=22.25 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=25.6
Q ss_pred EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEE
Q 012367 322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQF 357 (465)
Q Consensus 322 ~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~f 357 (465)
.+++.-.+++|.++|..+++.+..+.-......++|
T Consensus 6 lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 6 LYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 445555688999999999988888765444445554
No 456
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.91 E-value=55 Score=33.97 Aligned_cols=96 Identities=18% Similarity=0.207 Sum_probs=52.9
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcc
Q 012367 223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 302 (465)
Q Consensus 223 ~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (465)
=.|..+..++.|..+|-+|.+|.+..+=........ .+ ........+-..+ +. ..+
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s-~~-----------------eDgk~~v~CRt~~-----i~-~~~ 159 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNS-EF-----------------EDGKSTVNCRTTP-----VA-ERF 159 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccc-ee-----------------cCCCceEEEEeec-----cc-cee
Confidence 458889999999999999999977665322110000 00 0000000110000 00 001
Q ss_pred eeeeccccceEEEEecCC----CEEEEEeCCCeEEEEeCCCCeEe
Q 012367 303 QELHGHKGDVLDLAWSNS----NYLLSCSMDKTVRMWQVGCNQCL 343 (465)
Q Consensus 303 ~~~~gh~~~V~~l~~s~~----~~l~s~s~DgtV~lWD~~~~~~l 343 (465)
.+- ...-.+...+|+|+ ..|+.-+.|.+||+||+.....+
T Consensus 160 fts-s~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 160 FTS-STSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred ecc-CCceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 111 12235667889985 37788888999999998765443
No 457
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=68.33 E-value=54 Score=33.89 Aligned_cols=64 Identities=8% Similarity=0.128 Sum_probs=45.3
Q ss_pred EEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCC
Q 012367 315 LAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 380 (465)
Q Consensus 315 l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~ 380 (465)
..-..+|+++.+|..|.|++||--.-.....+ .....|..|.... +|.++++.+ ..++-+-|++
T Consensus 568 ~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta-~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 568 GMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTA-NGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred cccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeec-CCcEEEEee-cceEEEEecc
Confidence 33334689999999999999996433333333 3556788888888 888877666 4677777774
No 458
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=67.03 E-value=19 Score=22.59 Aligned_cols=30 Identities=27% Similarity=0.464 Sum_probs=20.2
Q ss_pred cCCCcEEEEEECCCCCEEEEEe-CC--CcEEEE
Q 012367 220 AHKGCIWTLKFSPDGRYLASGG-ED--GVVRIW 249 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs-~D--g~V~iW 249 (465)
...+......|||||++|+-++ .+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4556778999999999766554 45 666666
No 459
>PRK10115 protease 2; Provisional
Probab=66.82 E-value=2e+02 Score=31.50 Aligned_cols=108 Identities=9% Similarity=0.035 Sum_probs=61.2
Q ss_pred cceEEEEecCCC-EEE-EEeCC----CeEEEEeCCCCeEeEE-ecCCCceEEEEEccCCCCEEEEEeCC------CcEEE
Q 012367 310 GDVLDLAWSNSN-YLL-SCSMD----KTVRMWQVGCNQCLNV-FDHHNYVTCVQFNPIDDNYFISGSID------GKVRI 376 (465)
Q Consensus 310 ~~V~~l~~s~~~-~l~-s~s~D----gtV~lWD~~~~~~l~~-~~h~~~V~~i~fsp~~~~~l~sgs~D------g~I~i 376 (465)
-.+..+.|+|++ +|+ +...+ .+|++-|+.++..+.. +.... ..++|.+ +++.|+-...+ ..|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~-D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWAN-DSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEee-CCCEEEEEEecCCCCCCCEEEE
Confidence 345677889986 333 22222 3588999988864322 22221 4589999 77655544332 35777
Q ss_pred EeCCCC--eEE-ecccCCCCeE-EEEEeeCCCEEEEEEc---CCcEEEEEe
Q 012367 377 WGVCEK--RVV-DWADVRDVIS-AICYIPDGKGFIVGSI---TGTCHFYKA 420 (465)
Q Consensus 377 wd~~~~--~~~-~~~~~~~~V~-sv~~spdg~~l~sgs~---dG~v~iwd~ 420 (465)
+++.++ +-. .+........ .+..+.++++++..+. ++.+.+|+.
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 888776 221 1222222333 2333348887766554 457888885
No 460
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=65.91 E-value=20 Score=22.63 Aligned_cols=39 Identities=13% Similarity=0.099 Sum_probs=24.8
Q ss_pred CCCEEEE-EeCCCcEEEEeCCCCeEEecccCCCCeEEEEE
Q 012367 361 DDNYFIS-GSIDGKVRIWGVCEKRVVDWADVRDVISAICY 399 (465)
Q Consensus 361 ~~~~l~s-gs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~ 399 (465)
+++++++ .-.++.|.++|..++..+...........++|
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 4554444 44578999999988877664444444445544
No 461
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=65.48 E-value=9.8 Score=40.33 Aligned_cols=28 Identities=32% Similarity=0.783 Sum_probs=24.8
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeEeEEe
Q 012367 319 NSNYLLSCSMDKTVRMWQVGCNQCLNVF 346 (465)
Q Consensus 319 ~~~~l~s~s~DgtV~lWD~~~~~~l~~~ 346 (465)
.+.+|++.+.|+++|+||+.+++++...
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 3569999999999999999999997765
No 462
>PHA02790 Kelch-like protein; Provisional
Probab=64.32 E-value=1.9e+02 Score=30.16 Aligned_cols=99 Identities=12% Similarity=0.140 Sum_probs=53.0
Q ss_pred EEEEEeCC--CeEEEEeCCCCeEeEE--ecCCC-ceEEEEEccCCCCEEEEEeCCC---cEEEEeCCCCeEEecccCCCC
Q 012367 322 YLLSCSMD--KTVRMWQVGCNQCLNV--FDHHN-YVTCVQFNPIDDNYFISGSIDG---KVRIWGVCEKRVVDWADVRDV 393 (465)
Q Consensus 322 ~l~s~s~D--gtV~lWD~~~~~~l~~--~~h~~-~V~~i~fsp~~~~~l~sgs~Dg---~I~iwd~~~~~~~~~~~~~~~ 393 (465)
..+.|+.+ .++..||..+++-... +...- ....+.+ ++.+.+.||.++ .+..||..+.+.........+
T Consensus 321 iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~ 397 (480)
T PHA02790 321 LYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP 397 (480)
T ss_pred EEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc
Confidence 44555543 4577888765532221 11111 1122222 678888888654 477888887765543222111
Q ss_pred e-EEEEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367 394 I-SAICYIPDGKGFIVGSITGTCHFYKASGNDLK 426 (465)
Q Consensus 394 V-~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~ 426 (465)
. ...+..-+|+..+.| |.+.+||..+++..
T Consensus 398 r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~ 428 (480)
T PHA02790 398 HYKSCALVFGRRLFLVG---RNAEFYCESSNTWT 428 (480)
T ss_pred cccceEEEECCEEEEEC---CceEEecCCCCcEe
Confidence 1 111223467677776 45778998877654
No 463
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=63.96 E-value=85 Score=31.25 Aligned_cols=107 Identities=16% Similarity=0.117 Sum_probs=65.6
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeEeEEecCC---CceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCC--C
Q 012367 319 NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHH---NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRD--V 393 (465)
Q Consensus 319 ~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~---~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~--~ 393 (465)
-++.+..+..||.|.-.|..++..+...... ..+.+-.+.. +++ ++.++.++.++.+|..+++.+....... .
T Consensus 67 ~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~ 144 (370)
T COG1520 67 GDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPY 144 (370)
T ss_pred eCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCCeE
Confidence 3567777788898888899888876655433 2233323333 455 6667778899999998887765433333 1
Q ss_pred eEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367 394 ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 428 (465)
Q Consensus 394 V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~ 428 (465)
+..-..-.++ .+..++.+|.+...+..+++....
T Consensus 145 ~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~ 178 (370)
T COG1520 145 YASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWT 178 (370)
T ss_pred EecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEE
Confidence 2222222233 344444678888888777766444
No 464
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=63.45 E-value=1.9e+02 Score=29.93 Aligned_cols=37 Identities=14% Similarity=0.250 Sum_probs=27.7
Q ss_pred hhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCC
Q 012367 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS 253 (465)
Q Consensus 217 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~ 253 (465)
.+...-..-+.|+|.|+|++|++--..|.|++++-.+
T Consensus 24 ~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~ 60 (454)
T TIGR03606 24 VLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPET 60 (454)
T ss_pred EEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCC
Confidence 3334455678999999998888766579999987554
No 465
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=62.67 E-value=38 Score=37.63 Aligned_cols=63 Identities=14% Similarity=0.108 Sum_probs=45.6
Q ss_pred CcEEEEeCCCCeEEec-ccCCCCeEEEEEeeCCCEEEE-EEcCC-----cEEEEEecCCceeeeEeeecC
Q 012367 372 GKVRIWGVCEKRVVDW-ADVRDVISAICYIPDGKGFIV-GSITG-----TCHFYKASGNDLKLEKVDFHD 434 (465)
Q Consensus 372 g~I~iwd~~~~~~~~~-~~~~~~V~sv~~spdg~~l~s-gs~dG-----~v~iwd~~~~~~~~~~~~~~~ 434 (465)
+.|.+-|......... ..+...|.+-+|+|||+.|+- .+..+ .|.+-++.+....+.+++..+
T Consensus 329 ~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~ 398 (912)
T TIGR02171 329 GNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVEN 398 (912)
T ss_pred CeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeeccc
Confidence 4788888877666555 667888999999999999887 44444 478888887665555555444
No 466
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=62.54 E-value=21 Score=21.30 Aligned_cols=27 Identities=15% Similarity=0.126 Sum_probs=22.5
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeEeEEe
Q 012367 320 SNYLLSCSMDKTVRMWQVGCNQCLNVF 346 (465)
Q Consensus 320 ~~~l~s~s~DgtV~lWD~~~~~~l~~~ 346 (465)
++.++.++.++.+..+|..+|+.+..+
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 457888899999999999999877653
No 467
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=62.29 E-value=2e+02 Score=29.90 Aligned_cols=108 Identities=18% Similarity=0.074 Sum_probs=56.3
Q ss_pred EEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCc----eEEEEEccCCCCEEEEEeC-------------CCcEEEE
Q 012367 315 LAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY----VTCVQFNPIDDNYFISGSI-------------DGKVRIW 377 (465)
Q Consensus 315 l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~----V~~i~fsp~~~~~l~sgs~-------------Dg~I~iw 377 (465)
+...++|.|+.++. ..++.+|+- |+.+..+..... =..+...| +|++|+.+.. .-.|..+
T Consensus 153 ~~~l~nG~ll~~~~-~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~-nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELP-NGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB-TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-T-TS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC-CceEEEcCC-CCEEEeeecCCcccccccccEECC-CCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 45567776666555 788888885 666666542221 13566778 8899888872 1235566
Q ss_pred eCCCCeEEe---cccCC-------------------------CCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCcee
Q 012367 378 GVCEKRVVD---WADVR-------------------------DVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLK 426 (465)
Q Consensus 378 d~~~~~~~~---~~~~~-------------------------~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~~ 426 (465)
| .+|+++. ...|- --++++.+.|....|++.+. ...|...|..++++.
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~ 306 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIK 306 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEE
Confidence 6 6666653 11110 12889999995455555554 557777887777664
No 468
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.76 E-value=2e+02 Score=29.59 Aligned_cols=113 Identities=11% Similarity=0.120 Sum_probs=71.5
Q ss_pred cccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-----CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCC
Q 012367 308 HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 381 (465)
Q Consensus 308 h~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-----h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~ 381 (465)
..++|.+|.|++|+ .|+.--.|++|.+++....+...... .+..|...+|.. ..-+|-....| +-+|-+..
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~--s~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS--STEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec--CeeEEEEecCC-eEEEEEch
Confidence 45799999999987 66677889999999885444333332 233577888875 35555555333 66665532
Q ss_pred --CeEEecccCCCCeEEEEEeeCCCEEEEEEc--CCcEEEEEecCC
Q 012367 382 --KRVVDWADVRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGN 423 (465)
Q Consensus 382 --~~~~~~~~~~~~V~sv~~spdg~~l~sgs~--dG~v~iwd~~~~ 423 (465)
..+.....+.-.|+-..|.|+.+.++.++. ..++.=+-++.+
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 233335567788999999998876555543 333333444433
No 469
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=61.72 E-value=37 Score=30.98 Aligned_cols=49 Identities=8% Similarity=0.086 Sum_probs=35.1
Q ss_pred CEEEEEeCCCcEEEEeCCC--CeEEecccCCCCeEEEEEeeCCCEEEEEEc
Q 012367 363 NYFISGSIDGKVRIWGVCE--KRVVDWADVRDVISAICYIPDGKGFIVGSI 411 (465)
Q Consensus 363 ~~l~sgs~Dg~I~iwd~~~--~~~~~~~~~~~~V~sv~~spdg~~l~sgs~ 411 (465)
+.|..+....+|.+|++.+ .++......-+.|..+.++..|++|++-=.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEe
Confidence 3443335568899999983 344444445588999999999999999644
No 470
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=61.34 E-value=3.9 Score=44.56 Aligned_cols=115 Identities=17% Similarity=0.278 Sum_probs=67.7
Q ss_pred eeccccceEEEEecCCC--EEEEEeCCCeEEEEeCC--CCeE-----eEEec-CCCceEEEEEccC--CCCEEEEEeCCC
Q 012367 305 LHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVG--CNQC-----LNVFD-HHNYVTCVQFNPI--DDNYFISGSIDG 372 (465)
Q Consensus 305 ~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~--~~~~-----l~~~~-h~~~V~~i~fsp~--~~~~l~sgs~Dg 372 (465)
++|..+.|.++.|...+ .++ -.-|...|||+. .|+. ++... ...++.-|.|.|. +.-++..+-.++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 34566777777774311 111 222567788764 2322 22221 3345555555542 455666777788
Q ss_pred cEEEEeCCCCeEEecccCCCCeEEE-----------EEeeCCCEEEEEEcCCcEEEEEec
Q 012367 373 KVRIWGVCEKRVVDWADVRDVISAI-----------CYIPDGKGFIVGSITGTCHFYKAS 421 (465)
Q Consensus 373 ~I~iwd~~~~~~~~~~~~~~~V~sv-----------~~spdg~~l~sgs~dG~v~iwd~~ 421 (465)
.|++........--+.+|..+++.+ ..+|||+.++.++.||.+++|.+-
T Consensus 206 ~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 206 EIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred ceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 8887766543222233355444432 368999999999999999999764
No 471
>PF11538 Snurportin1: Snurportin1; InterPro: IPR024721 Snurportin-1 is a nuclear import receptor that contains an N-terminal importin beta binding domain which is essential for its function as an snRNP-specific nuclear import receptor []. Snurportin-1 interacts with m3G-cap where it enhances the m3G-cap dependent nuclear import of U snRNPs in Xenopus laevis oocytes and digitonin-permeabilized HeLa cells []. This entry represents the snurportin-1 N-terminal importin beta binding domain (IBB). The essential role of the IBB domain for snurportin-1 function suggests that snurportin-1 cooperates with importin beta in mediating nuclear import of snRNPs.; GO: 0005515 protein binding; PDB: 3LWW_D 3NC0_E 3NBZ_E 2Q5D_C 3NBY_B 3GB8_B 3GJX_B 2QNA_B 2P8Q_B.
Probab=61.27 E-value=12 Score=24.30 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=18.4
Q ss_pred CCCcccceeccCCCCHHHHHHHHHHh
Q 012367 33 PGKLDYDIWMSEPRSVKERRKNFLCK 58 (465)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (465)
|+-+.|..+ ....+-+|||++||..
T Consensus 2 PR~sqYK~~-~~~~~Q~eRR~~~Le~ 26 (40)
T PF11538_consen 2 PRLSQYKNK-GSALDQEERRREFLER 26 (40)
T ss_dssp TTCSCTT-T-TTSCSHHHHHHHHHHH
T ss_pred ccHHHhhcc-cchHhHHHHHHHHHHH
Confidence 455668777 5566899999999974
No 472
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=60.78 E-value=17 Score=38.50 Aligned_cols=38 Identities=21% Similarity=0.333 Sum_probs=27.9
Q ss_pred CcEEEEEECC----CCCEEEEEeCCCcEEEEecCCceeeeee
Q 012367 223 GCIWTLKFSP----DGRYLASGGEDGVVRIWHVTSVAASCKS 260 (465)
Q Consensus 223 ~~I~~l~fsp----dg~~LaSgs~Dg~V~iWd~~~~~~~~~~ 260 (465)
+.+..+++++ +..+|++.+.|+++|+||+.+..+....
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 4455666666 6679999999999999999998875443
No 473
>PHA03098 kelch-like protein; Provisional
Probab=60.27 E-value=68 Score=33.76 Aligned_cols=104 Identities=13% Similarity=0.171 Sum_probs=55.5
Q ss_pred CCEEEEEeCCC------eEEEEeCCCCeEeEEecCC---CceEEEEEccCCCCEEEEEeCC-----CcEEEEeCCCCeEE
Q 012367 320 SNYLLSCSMDK------TVRMWQVGCNQCLNVFDHH---NYVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVV 385 (465)
Q Consensus 320 ~~~l~s~s~Dg------tV~lWD~~~~~~l~~~~h~---~~V~~i~fsp~~~~~l~sgs~D-----g~I~iwd~~~~~~~ 385 (465)
+..++.|+.++ .+..||..+++-...-... .....+.+ ++.+++.||.+ ..+..||..+.+..
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 34555555432 5778888776543221111 11222233 67788888865 35778888877654
Q ss_pred ecccCCCCe-EEEEEeeCCCEEEEEEcC------CcEEEEEecCCcee
Q 012367 386 DWADVRDVI-SAICYIPDGKGFIVGSIT------GTCHFYKASGNDLK 426 (465)
Q Consensus 386 ~~~~~~~~V-~sv~~spdg~~l~sgs~d------G~v~iwd~~~~~~~ 426 (465)
.......+. ...+..-+++..+.|+.+ ..+..||+.+++..
T Consensus 372 ~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 372 EEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred eCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 432221111 111122367777777742 35788888776543
No 474
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=59.51 E-value=1.8e+02 Score=29.50 Aligned_cols=32 Identities=9% Similarity=0.127 Sum_probs=26.0
Q ss_pred CCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367 392 DVISAICYIPDGKGFIVGSITGTCHFYKASGN 423 (465)
Q Consensus 392 ~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~ 423 (465)
..|.+++..+..+.+++.+.+|.|.+|++..+
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 34999999999999999999999999999853
No 475
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=59.06 E-value=87 Score=30.52 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=0.0
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCc--------------------EEE
Q 012367 317 WSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK--------------------VRI 376 (465)
Q Consensus 317 ~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~--------------------I~i 376 (465)
|+.+.+.++-+..|.|.-+|..+|+......-.+....++| .|+++++|-..-. |.+
T Consensus 210 WhdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f---~G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~v 286 (335)
T TIGR03032 210 WYQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAF---AGDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAV 286 (335)
T ss_pred EeCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCcccce---eCCEEEEEeccccCCCCcCCCchhhhhhhhcccEEE
Q ss_pred EeCCCCeEEecccCCCCeEEE
Q 012367 377 WGVCEKRVVDWADVRDVISAI 397 (465)
Q Consensus 377 wd~~~~~~~~~~~~~~~V~sv 397 (465)
.|++++.++.+....+.|.-+
T Consensus 287 idl~tG~vv~~l~feg~v~Ei 307 (335)
T TIGR03032 287 IDLNSGDVVHWLRFEGVIEEI 307 (335)
T ss_pred EECCCCCEEEEEEeCCceeEE
No 476
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=58.99 E-value=25 Score=22.08 Aligned_cols=28 Identities=11% Similarity=0.033 Sum_probs=23.8
Q ss_pred EEEEEeCCCeEEEEeCCCCeEeEEecCC
Q 012367 322 YLLSCSMDKTVRMWQVGCNQCLNVFDHH 349 (465)
Q Consensus 322 ~l~s~s~DgtV~lWD~~~~~~l~~~~h~ 349 (465)
.++.++.||.|.-.|..+|+.+..++..
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 4667799999999999999999988643
No 477
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=58.67 E-value=1.7e+02 Score=31.83 Aligned_cols=33 Identities=12% Similarity=0.283 Sum_probs=28.6
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEecCCc
Q 012367 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV 254 (465)
Q Consensus 222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~ 254 (465)
...++++.-+|.|+-+++++.||.|++|++...
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r 46 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPR 46 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeeccc
Confidence 344788999999999999999999999998654
No 478
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=57.81 E-value=1.2e+02 Score=33.33 Aligned_cols=71 Identities=11% Similarity=0.048 Sum_probs=46.2
Q ss_pred ccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe----cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCC
Q 012367 307 GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF----DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 381 (465)
Q Consensus 307 gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~----~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~ 381 (465)
--..+|..+++..+ ++-++.+|.|.++...+....+.. .|...|+++.+.- ...+++-.....++.++..+
T Consensus 624 ~g~lPvrsla~~ed--~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~--~gVwvafasG~~~rlfhtet 698 (925)
T KOG3522|consen 624 TGSLPVRSLAFQED--FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLD--NGVWVAFASGDEERLFHTET 698 (925)
T ss_pred cCCccccchhhhhc--eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeC--CceEEEEcCCCEEEEecccc
Confidence 34456777776554 556677899999988765544443 4778899999874 44444444455677665543
No 479
>PF15477 SMAP: Small acidic protein family
Probab=57.71 E-value=6.8 Score=28.80 Aligned_cols=18 Identities=33% Similarity=0.390 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHhcCCCCC
Q 012367 47 SVKERRKNFLCKMGLVEF 64 (465)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~ 64 (465)
.=.||.++||+-||.-..
T Consensus 9 gd~~rk~KFlRLMG~kk~ 26 (69)
T PF15477_consen 9 GDSERKEKFLRLMGGKKA 26 (69)
T ss_pred CCHHHHHHHHHHhcCCCC
Confidence 347999999999998864
No 480
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=57.55 E-value=41 Score=34.21 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=43.0
Q ss_pred EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe
Q 012367 322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR 383 (465)
Q Consensus 322 ~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~ 383 (465)
-+++-+..|++.++.....+.+-.-.....+.-++++| .++++++-. .|+|+++.+.+..
T Consensus 330 gF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp-~~~~Ll~e~-~gki~~~~l~Nr~ 389 (733)
T COG4590 330 GFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSP-NQAYLLSED-QGKIRLAQLENRN 389 (733)
T ss_pred eEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCc-ccchheeec-CCceEEEEecCCC
Confidence 56777888888888765555443333444667789999 888888764 5789999887653
No 481
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=54.89 E-value=2.5e+02 Score=31.03 Aligned_cols=102 Identities=10% Similarity=0.047 Sum_probs=52.5
Q ss_pred EEEEecCCC-EEEEEeCCC-----eEEEEeCC---CCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe
Q 012367 313 LDLAWSNSN-YLLSCSMDK-----TVRMWQVG---CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR 383 (465)
Q Consensus 313 ~~l~~s~~~-~l~s~s~Dg-----tV~lWD~~---~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~ 383 (465)
..+.|-|+| .++|-..|| .|+.+.-. .|..-...+....+..++|+- ....++. +..+.|.+|-..+-.
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~-~s~vlav-~~~n~~~lwttkNyh 327 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNL-LSTVLAV-AEGNLLKLWTTKNYH 327 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhH-HHHHHHH-hhcceEEEEEccceE
Confidence 457888886 666665444 24444321 122211112333456667765 4333333 346789999876654
Q ss_pred EEec-ccCCCCeEEEEEeeCCCEEEEEEcCCcEE
Q 012367 384 VVDW-ADVRDVISAICYIPDGKGFIVGSITGTCH 416 (465)
Q Consensus 384 ~~~~-~~~~~~V~sv~~spdg~~l~sgs~dG~v~ 416 (465)
..-. .-.-..+.-+.|+|..+.-+.-+..+.|.
T Consensus 328 WYLK~e~~ip~~s~vkwhpe~~nTl~f~d~~~I~ 361 (1243)
T COG5290 328 WYLKVERQIPGISYVKWHPEEKNTLLFRDGERIL 361 (1243)
T ss_pred EEEEEeecCCCcceeeeccccCcEEEEecCCeEE
Confidence 3321 11223466788999654333333344443
No 482
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=54.21 E-value=31 Score=20.11 Aligned_cols=25 Identities=12% Similarity=0.212 Sum_probs=15.6
Q ss_pred eEEEEEeeCCCEEEEEEcCCcEEEE
Q 012367 394 ISAICYIPDGKGFIVGSITGTCHFY 418 (465)
Q Consensus 394 V~sv~~spdg~~l~sgs~dG~v~iw 418 (465)
...++..++|+.+++=+...+|.+|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4566777777666666566666554
No 483
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=52.97 E-value=28 Score=27.01 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=30.1
Q ss_pred eCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEE
Q 012367 369 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS 410 (465)
Q Consensus 369 s~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs 410 (465)
..+|.+.-||..+++...+...-...+.|+.+||+.+++++=
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEe
Confidence 346788899999988766555555789999999999776653
No 484
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=52.69 E-value=2.8e+02 Score=28.64 Aligned_cols=53 Identities=13% Similarity=0.176 Sum_probs=36.1
Q ss_pred ccccceEEEEecCCCEEEEEeC-CCeEEEEeCCCCeE--eEEec------CCCceEEEEEcc
Q 012367 307 GHKGDVLDLAWSNSNYLLSCSM-DKTVRMWQVGCNQC--LNVFD------HHNYVTCVQFNP 359 (465)
Q Consensus 307 gh~~~V~~l~~s~~~~l~s~s~-DgtV~lWD~~~~~~--l~~~~------h~~~V~~i~fsp 359 (465)
..-...+.|+|.|++.++.+-. .|.|++++..++.. +..+. .......|+++|
T Consensus 27 ~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~P 88 (454)
T TIGR03606 27 SGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHP 88 (454)
T ss_pred CCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECC
Confidence 3445678999999986666666 69999998765432 21111 245678999998
No 485
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=52.52 E-value=31 Score=20.25 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=20.3
Q ss_pred CCeEEEEEeeCCCEEEEEEcCCcEEEEE
Q 012367 392 DVISAICYIPDGKGFIVGSITGTCHFYK 419 (465)
Q Consensus 392 ~~V~sv~~spdg~~l~sgs~dG~v~iwd 419 (465)
+.|.+++..+. ++++++..+.+|+|.
T Consensus 2 E~i~aia~g~~--~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGDS--WVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccCC--EEEEEeCCCeEEecC
Confidence 35777777644 899999999999983
No 486
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=51.72 E-value=80 Score=24.31 Aligned_cols=49 Identities=27% Similarity=0.245 Sum_probs=31.8
Q ss_pred CcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecC
Q 012367 372 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASG 422 (465)
Q Consensus 372 g~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~ 422 (465)
+.|..||....+ .....-...+.|.++|+++.|.+++. .+.|++|....
T Consensus 36 ~~Vvyyd~~~~~--~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 36 GNVVYYDGKEVK--VVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred ceEEEEeCCEeE--EeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 345555543222 22223345678999999998887775 68999998754
No 487
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=51.40 E-value=3.9e+02 Score=29.79 Aligned_cols=109 Identities=12% Similarity=0.115 Sum_probs=70.7
Q ss_pred cceEEEEecCC--CEEEEEeCCCeEEEEeCCCCe-----EeEEe-cCCCc----------eEEEEEccCCCCEEEEEeCC
Q 012367 310 GDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQ-----CLNVF-DHHNY----------VTCVQFNPIDDNYFISGSID 371 (465)
Q Consensus 310 ~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~-----~l~~~-~h~~~----------V~~i~fsp~~~~~l~sgs~D 371 (465)
.+..+++|+|. +.||.....|...|||+.... .+... .+.+. -..|.|.+ +.+.|+.++ .
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~-r 223 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCN-R 223 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEc-C
Confidence 36678999984 589999999999999992111 11111 12222 23788887 666666665 4
Q ss_pred CcEEEEeCCCCeE---EecccCCCCeEEEEEeeC--CCEEEEEEcCCcEEEEEecC
Q 012367 372 GKVRIWGVCEKRV---VDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASG 422 (465)
Q Consensus 372 g~I~iwd~~~~~~---~~~~~~~~~V~sv~~spd--g~~l~sgs~dG~v~iwd~~~ 422 (465)
..+.++|+.+... +........|..+.-+|. +..++. + ...|...++..
T Consensus 224 ~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-T-s~eiiw~~~~~ 277 (765)
T PF10214_consen 224 SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-T-SKEIIWLDVKS 277 (765)
T ss_pred CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE-e-cCeEEEEEccC
Confidence 6789999987654 334445677999998887 333333 2 34666667665
No 488
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=51.28 E-value=1.2e+02 Score=31.13 Aligned_cols=102 Identities=13% Similarity=0.156 Sum_probs=67.9
Q ss_pred EEEEEeCCCeEEEE-eCCCCe-----EeEEecC-CCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCe
Q 012367 322 YLLSCSMDKTVRMW-QVGCNQ-----CLNVFDH-HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVI 394 (465)
Q Consensus 322 ~l~s~s~DgtV~lW-D~~~~~-----~l~~~~h-~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V 394 (465)
-|+.++.||.|.-| |++.+. .++.|+. ...|..+.-.. +.+-|++-...|++.++.....+.+-....-..+
T Consensus 282 SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~ 360 (733)
T COG4590 282 SLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAP 360 (733)
T ss_pred eEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceehhhhhcCc
Confidence 57788888888877 554332 1222221 23343333222 4566888888899998887666666555555578
Q ss_pred EEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 395 SAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 395 ~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
.-++++|.+.++++- ..|.++++.+++...
T Consensus 361 ~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 361 QLVAMSPNQAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred ceeeeCcccchheee-cCCceEEEEecCCCC
Confidence 889999999998874 567899998886544
No 489
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=50.88 E-value=2.5e+02 Score=27.45 Aligned_cols=109 Identities=17% Similarity=0.264 Sum_probs=65.5
Q ss_pred ceEEEEecCCC-EEEEEeCC------CeEEEEeCCCCeEeEEe----------------cCCCceEEEEEccCCCCEEEE
Q 012367 311 DVLDLAWSNSN-YLLSCSMD------KTVRMWQVGCNQCLNVF----------------DHHNYVTCVQFNPIDDNYFIS 367 (465)
Q Consensus 311 ~V~~l~~s~~~-~l~s~s~D------gtV~lWD~~~~~~l~~~----------------~h~~~V~~i~fsp~~~~~l~s 367 (465)
+.-+|++.+++ ++++.=.+ ..|..++.. |+.+..+ ..+.....++++| +++.|++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~ 163 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFA 163 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEE
Confidence 45567775555 55555555 678888876 5554443 1344678999999 8886665
Q ss_pred EeC-----CC--c-------EEEE--eCCC-CeE----E-eccc-----CCCCeEEEEEeeCCCEEEEEEc-----CCcE
Q 012367 368 GSI-----DG--K-------VRIW--GVCE-KRV----V-DWAD-----VRDVISAICYIPDGKGFIVGSI-----TGTC 415 (465)
Q Consensus 368 gs~-----Dg--~-------I~iw--d~~~-~~~----~-~~~~-----~~~~V~sv~~spdg~~l~sgs~-----dG~v 415 (465)
+.. |+ . ++|+ |..+ +.. . .... ....|+.+.+-+++++|+.=-. ...+
T Consensus 164 ~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ 243 (326)
T PF13449_consen 164 AMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYK 243 (326)
T ss_pred EECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceE
Confidence 543 22 1 5555 4443 211 1 1222 4567999999999987766322 3456
Q ss_pred EEEEec
Q 012367 416 HFYKAS 421 (465)
Q Consensus 416 ~iwd~~ 421 (465)
+||.+.
T Consensus 244 ri~~v~ 249 (326)
T PF13449_consen 244 RIYRVD 249 (326)
T ss_pred EEEEEE
Confidence 666554
No 490
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=50.47 E-value=27 Score=32.67 Aligned_cols=87 Identities=20% Similarity=0.318 Sum_probs=51.4
Q ss_pred EEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeC-C--CcEEEEeCCC----CeEEe---cccCCCCeEEEEEe
Q 012367 332 VRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSI-D--GKVRIWGVCE----KRVVD---WADVRDVISAICYI 400 (465)
Q Consensus 332 V~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~-D--g~I~iwd~~~----~~~~~---~~~~~~~V~sv~~s 400 (465)
-.+||+.+++..... ........-.|-| +|+++++|+. + ..+|+++..+ ..... ......+-.++.--
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~-dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLP-DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCC-CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 457888877543222 2223344446778 9999999886 2 4588888654 11111 11223334455566
Q ss_pred eCCCEEEEEEcCC-cEEEEE
Q 012367 401 PDGKGFIVGSITG-TCHFYK 419 (465)
Q Consensus 401 pdg~~l~sgs~dG-~v~iwd 419 (465)
|||+.|++|+... +.-+|.
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P 146 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWP 146 (243)
T ss_pred CCCCEEEEeCcCCCcccccC
Confidence 7999999998874 233444
No 491
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=48.72 E-value=2.6e+02 Score=28.38 Aligned_cols=107 Identities=9% Similarity=0.066 Sum_probs=58.8
Q ss_pred eEEEEecCCCEEEEEeCCCeE-EEEeCCCCe-EeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe------
Q 012367 312 VLDLAWSNSNYLLSCSMDKTV-RMWQVGCNQ-CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR------ 383 (465)
Q Consensus 312 V~~l~~s~~~~l~s~s~DgtV-~lWD~~~~~-~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~------ 383 (465)
...+..++++.++..+..|.+ +-||-.... ..........++.+.|.+ ++.+++++. +|.+.. ....+.
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g~-~G~l~~-S~d~G~~~~~~~ 317 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRA-DGGLWLLTR-GGGLYV-SKGTGLTEEDFD 317 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcC-CCCEEEEeC-CceEEE-ecCCCCcccccc
Confidence 334455566645555555543 345543221 222334456789999988 888877664 555443 333332
Q ss_pred EEe--cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367 384 VVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG 422 (465)
Q Consensus 384 ~~~--~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~ 422 (465)
... .......+.++.|.+++..+++ +..|.+....-.+
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~D~G 357 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRSTDGG 357 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEeCCCC
Confidence 111 1112245899999988766555 5678766554333
No 492
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.97 E-value=4.3e+02 Score=29.02 Aligned_cols=35 Identities=11% Similarity=0.267 Sum_probs=28.3
Q ss_pred CCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeE
Q 012367 349 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 384 (465)
Q Consensus 349 ~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~ 384 (465)
...+..+..+| +.++|+--..+|.|.+-++...+.
T Consensus 216 ~~~~~ki~VS~-n~~~laLyt~~G~i~~vs~D~~~~ 250 (829)
T KOG2280|consen 216 NSSVVKISVSP-NRRFLALYTETGKIWVVSIDLSQI 250 (829)
T ss_pred CceEEEEEEcC-CcceEEEEecCCcEEEEecchhhh
Confidence 35677888999 899999988999999888765543
No 493
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=46.71 E-value=2.8e+02 Score=26.84 Aligned_cols=82 Identities=12% Similarity=0.133 Sum_probs=41.8
Q ss_pred CeEEEEeCCCCeEe--EEecCCCceEEEEEccCCCCEEEEEeCCC----cEEEEeCCCCeEEecccCC---CCe---EEE
Q 012367 330 KTVRMWQVGCNQCL--NVFDHHNYVTCVQFNPIDDNYFISGSIDG----KVRIWGVCEKRVVDWADVR---DVI---SAI 397 (465)
Q Consensus 330 gtV~lWD~~~~~~l--~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg----~I~iwd~~~~~~~~~~~~~---~~V---~sv 397 (465)
..+..||+.+.+=. ..+.........+..- ++.+++.|+.++ .+.+||..+.+........ .+. ...
T Consensus 139 ~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~ 217 (323)
T TIGR03548 139 NKSYLFNLETQEWFELPDFPGEPRVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAA 217 (323)
T ss_pred ceEEEEcCCCCCeeECCCCCCCCCCcceEEEE-CCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceecccee
Confidence 45788888765422 1121111111111122 677888887764 3568898887655433211 111 111
Q ss_pred -EEeeCCCEEEEEEcC
Q 012367 398 -CYIPDGKGFIVGSIT 412 (465)
Q Consensus 398 -~~spdg~~l~sgs~d 412 (465)
+...++++++.|+.+
T Consensus 218 ~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 218 SIKINESLLLCIGGFN 233 (323)
T ss_pred EEEECCCEEEEECCcC
Confidence 122367788888876
No 494
>PLN02153 epithiospecifier protein
Probab=45.73 E-value=3e+02 Score=26.90 Aligned_cols=65 Identities=11% Similarity=0.350 Sum_probs=37.0
Q ss_pred CCCEEEEEeCC-----------CcEEEEeCCCCeEEecccCC----CCe-EEEEEeeCCCEEEEEEcC------------
Q 012367 361 DDNYFISGSID-----------GKVRIWGVCEKRVVDWADVR----DVI-SAICYIPDGKGFIVGSIT------------ 412 (465)
Q Consensus 361 ~~~~l~sgs~D-----------g~I~iwd~~~~~~~~~~~~~----~~V-~sv~~spdg~~l~sgs~d------------ 412 (465)
++.+++.|+.+ ..|.+||..+.+........ ..- .+++ .-+++.++.|+.+
T Consensus 137 ~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~gG~~~~~ 215 (341)
T PLN02153 137 ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFA-VVQGKIWVVYGFATSILPGGKSDYE 215 (341)
T ss_pred CCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEE-EECCeEEEEeccccccccCCcccee
Confidence 56777777754 24778898877655432211 111 1122 2366766666532
Q ss_pred -CcEEEEEecCCcee
Q 012367 413 -GTCHFYKASGNDLK 426 (465)
Q Consensus 413 -G~v~iwd~~~~~~~ 426 (465)
..+.+||+.+.+..
T Consensus 216 ~~~v~~yd~~~~~W~ 230 (341)
T PLN02153 216 SNAVQFFDPASGKWT 230 (341)
T ss_pred cCceEEEEcCCCcEE
Confidence 45888888876554
No 495
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.66 E-value=86 Score=35.91 Aligned_cols=77 Identities=14% Similarity=0.142 Sum_probs=50.6
Q ss_pred eeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCC
Q 012367 303 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 382 (465)
Q Consensus 303 ~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~ 382 (465)
..+.-|...+.+..+...+.++.+..-+.+-.|+.........+.-... ..++ ++..++++..||.+..||...+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~v~~h~Dgs~~fWd~s~g 266 (993)
T KOG1983|consen 192 LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQ----LESR-DGSHFVSYHTDGSYAFWDVSSG 266 (993)
T ss_pred ccccccccccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccc----cCcc-CCceEEEEEecCCEEeeecCCC
Confidence 3344456666666665444455556667787887765544444421111 1156 8999999999999999999887
Q ss_pred eE
Q 012367 383 RV 384 (465)
Q Consensus 383 ~~ 384 (465)
+.
T Consensus 267 ~~ 268 (993)
T KOG1983|consen 267 KL 268 (993)
T ss_pred ce
Confidence 54
No 496
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=44.82 E-value=5.2 Score=28.75 Aligned_cols=28 Identities=25% Similarity=0.757 Sum_probs=19.8
Q ss_pred ceeeecccccccccCccccccCCCCCcccceeccCCCCHHHHHHHHHHhc
Q 012367 10 DVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRKNFLCKM 59 (465)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (465)
..||+++|.+- ++|...|.. ++.|||+|
T Consensus 13 g~f~EaHEvlE------------------~~W~~~~~~----~~~~lqgl 40 (62)
T PF03745_consen 13 GDFFEAHEVLE------------------ELWKAAPGP----ERDFLQGL 40 (62)
T ss_dssp T-HHHHHHHHH------------------HHCCCT-CC----HHHHHHHH
T ss_pred CCHHHhHHHHH------------------HHHHHCCcc----hHHHHHHH
Confidence 46788888773 799887766 77888875
No 497
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=44.38 E-value=89 Score=26.39 Aligned_cols=62 Identities=15% Similarity=0.114 Sum_probs=30.3
Q ss_pred CCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCcc
Q 012367 390 VRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNYD 455 (465)
Q Consensus 390 ~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~d 455 (465)
....+.---|.+|-+.|..++. |++|+.|.+......+..+.-.. ......|+.|.|-..-|
T Consensus 9 ~s~g~L~P~yD~dt~llyl~gKGD~~ir~yEv~~~~p~l~~l~~~~----s~~~~~G~~~lPK~~~d 71 (136)
T PF08954_consen 9 TSSGVLMPFYDEDTNLLYLAGKGDGNIRYYEVSDESPYLHYLSEYR----SPEPQKGFAFLPKRACD 71 (136)
T ss_dssp --SS-EEEEE-TTT-EEEEEETT-S-EEEEEE-SSTTSEEEEEEE------SS--SEEEE--GGGS-
T ss_pred CCCceeEeeEcCCCCEEEEEeccCcEEEEEEEcCCCCceEEccccc----cCCCeEeeEecCcccCC
Confidence 3445666678888877766664 89999999988743333322221 23567788888865444
No 498
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=43.03 E-value=80 Score=19.86 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=15.9
Q ss_pred CCCEEEEEeCCCcEEEEeCCC
Q 012367 361 DDNYFISGSIDGKVRIWGVCE 381 (465)
Q Consensus 361 ~~~~l~sgs~Dg~I~iwd~~~ 381 (465)
.+..++.++.||.|+.+|..+
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 466788888899999999764
No 499
>PRK13615 lipoprotein LpqB; Provisional
Probab=42.84 E-value=4.4e+02 Score=28.05 Aligned_cols=74 Identities=4% Similarity=-0.006 Sum_probs=44.3
Q ss_pred CCceEEEEEccCCCCEEEEEeC---CCcEEEEeC--CCC---eE-E---ecccCCCCeEEEEEeeCCCEEEEEEc---CC
Q 012367 349 HNYVTCVQFNPIDDNYFISGSI---DGKVRIWGV--CEK---RV-V---DWADVRDVISAICYIPDGKGFIVGSI---TG 413 (465)
Q Consensus 349 ~~~V~~i~fsp~~~~~l~sgs~---Dg~I~iwd~--~~~---~~-~---~~~~~~~~V~sv~~spdg~~l~sgs~---dG 413 (465)
...|..+..++ +|-.++.-.. .++|.|=-+ ..+ .+ . ........+.++.|..++..++.+.. +.
T Consensus 416 ~~~I~~lrvSr-DG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl~~~~~~~~ 494 (557)
T PRK13615 416 TGRVVSLEVAR-DGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVATLTLAPDGER 494 (557)
T ss_pred CCeeEEEEeCC-CccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEEeccCCCCc
Confidence 35799999999 8776655432 345555332 122 22 1 12222348899999999987666632 34
Q ss_pred cEEEEEecCC
Q 012367 414 TCHFYKASGN 423 (465)
Q Consensus 414 ~v~iwd~~~~ 423 (465)
.+++..+.+.
T Consensus 495 ~v~~v~v~g~ 504 (557)
T PRK13615 495 QVELHQVGGP 504 (557)
T ss_pred eEEEEECCCc
Confidence 5666666543
No 500
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=42.23 E-value=1.6e+02 Score=33.44 Aligned_cols=106 Identities=18% Similarity=0.267 Sum_probs=61.5
Q ss_pred CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEec---ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCc
Q 012367 348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW---ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 424 (465)
Q Consensus 348 h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~---~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~ 424 (465)
....|.++ .| -..++.+| ....+++||+-..++.+. ......|+.+++. +..+++|...-.++++..+...
T Consensus 934 ~~~~v~Ai--~~-f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~ 1007 (1205)
T KOG1898|consen 934 IPGPVGAI--CP-FQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRRED 1007 (1205)
T ss_pred CCccceEE--ec-cCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecCC
Confidence 34455555 45 33355544 467899999988776652 2246677777775 5688998887777776655444
Q ss_pred eeeeEeeecCcccccCCceeeEEEe------ecCCccceeeeecC
Q 012367 425 LKLEKVDFHDRKKTSGNKITGIQGR------ISKNYDNFRRFQTP 463 (465)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~It~~~f~------p~gs~d~~~~~~~p 463 (465)
-++..+.-.. -...+|.+.+. -.+.|.|+.++-.|
T Consensus 1008 n~l~~fadD~----~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1008 NQLIVFADDP----VPRHVTALELLDYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CeEEEEeCCC----ccceeeEEEEecCCceeeccccCcEEEEECC
Confidence 4443332111 11244444332 33556676666655
Done!