Query 012367
Match_columns 465
No_of_seqs 599 out of 3100
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 08:04:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012367.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012367hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 7.7E-32 2.6E-36 272.7 31.0 329 105-462 3-367 (410)
2 4gqb_B Methylosome protein 50; 100.0 1.9E-29 6.4E-34 249.4 25.3 194 217-463 122-330 (344)
3 3ow8_A WD repeat-containing pr 100.0 1.8E-28 6E-33 239.9 31.7 253 193-464 56-321 (321)
4 1got_B GT-beta; complex (GTP-b 100.0 1.2E-28 4.1E-33 242.8 30.3 239 212-462 45-299 (340)
5 3iz6_a 40S ribosomal protein R 100.0 2.1E-28 7.2E-33 244.8 31.1 246 210-462 54-327 (380)
6 2ynn_A Coatomer subunit beta'; 100.0 3.5E-28 1.2E-32 235.6 29.9 237 213-462 4-257 (304)
7 2pbi_B Guanine nucleotide-bind 100.0 6.9E-28 2.3E-32 238.9 32.7 239 213-462 55-313 (354)
8 1vyh_C Platelet-activating fac 100.0 9.6E-28 3.3E-32 242.6 29.1 237 213-462 141-409 (410)
9 4ery_A WD repeat-containing pr 100.0 1.8E-27 6.1E-32 230.7 28.4 199 212-462 13-221 (312)
10 3fm0_A Protein CIAO1; WDR39,SG 100.0 9.2E-28 3.1E-32 237.0 26.8 200 213-461 6-222 (345)
11 2pm7_B Protein transport prote 100.0 1.8E-27 6.3E-32 229.7 28.0 199 216-462 3-236 (297)
12 3frx_A Guanine nucleotide-bind 100.0 1.3E-27 4.6E-32 233.2 27.2 203 212-462 7-225 (319)
13 1nr0_A Actin interacting prote 100.0 2.3E-27 7.9E-32 252.2 31.1 206 213-425 50-273 (611)
14 3frx_A Guanine nucleotide-bind 100.0 5.3E-27 1.8E-31 228.9 31.2 241 214-462 57-315 (319)
15 1got_B GT-beta; complex (GTP-b 100.0 4.1E-27 1.4E-31 231.7 29.7 226 214-454 89-326 (340)
16 2xzm_R RACK1; ribosome, transl 100.0 1.2E-26 4.1E-31 228.6 28.7 236 213-462 12-283 (343)
17 3ow8_A WD repeat-containing pr 100.0 1.9E-26 6.4E-31 225.5 29.3 234 216-463 26-278 (321)
18 2ynn_A Coatomer subunit beta'; 100.0 1.3E-26 4.4E-31 224.5 26.2 190 213-453 88-283 (304)
19 2pbi_B Guanine nucleotide-bind 100.0 2.8E-26 9.6E-31 227.3 28.3 186 216-454 148-340 (354)
20 2hes_X YDR267CP; beta-propelle 100.0 2.4E-26 8.1E-31 225.4 27.4 199 212-462 4-228 (330)
21 4aow_A Guanine nucleotide-bind 99.9 6.1E-26 2.1E-30 221.2 28.1 248 213-462 29-335 (340)
22 3f3f_A Nucleoporin SEH1; struc 99.9 5.5E-26 1.9E-30 220.8 27.1 167 215-423 4-250 (351)
23 4g56_B MGC81050 protein; prote 99.9 4.6E-26 1.6E-30 226.1 27.0 202 218-425 135-346 (357)
24 3bg1_A Protein SEC13 homolog; 99.9 4.2E-27 1.4E-31 229.4 19.1 189 216-452 7-224 (316)
25 2pm7_B Protein transport prote 99.9 6.9E-26 2.3E-30 218.6 27.0 205 214-463 45-284 (297)
26 2hes_X YDR267CP; beta-propelle 99.9 5.8E-26 2E-30 222.6 25.3 201 220-462 56-278 (330)
27 1nr0_A Actin interacting prote 99.9 9.8E-26 3.4E-30 239.6 28.9 242 215-464 317-611 (611)
28 4e54_B DNA damage-binding prot 99.9 1.1E-26 3.8E-31 236.4 20.0 200 215-462 112-325 (435)
29 4gqb_B Methylosome protein 50; 99.9 4E-26 1.4E-30 225.5 23.4 171 212-426 159-335 (344)
30 3fm0_A Protein CIAO1; WDR39,SG 99.9 5E-26 1.7E-30 224.5 23.9 200 218-461 57-280 (345)
31 1erj_A Transcriptional repress 99.9 3.7E-25 1.3E-29 222.2 30.4 242 220-462 62-339 (393)
32 3iz6_a 40S ribosomal protein R 99.9 3.4E-26 1.1E-30 228.8 22.7 255 192-463 85-374 (380)
33 3jrp_A Fusion protein of prote 99.9 2.3E-25 7.8E-30 220.0 26.7 201 214-462 3-238 (379)
34 3dwl_C Actin-related protein 2 99.9 3.3E-26 1.1E-30 227.2 19.3 204 213-462 46-279 (377)
35 2xzm_R RACK1; ribosome, transl 99.9 1.2E-24 4.2E-29 214.1 30.0 239 215-462 69-338 (343)
36 4ery_A WD repeat-containing pr 99.9 9.3E-25 3.2E-29 211.5 28.1 166 214-425 57-226 (312)
37 4g56_B MGC81050 protein; prote 99.9 7.7E-26 2.6E-30 224.5 19.8 198 218-462 38-256 (357)
38 1gxr_A ESG1, transducin-like e 99.9 6.5E-24 2.2E-28 206.1 31.9 230 220-464 95-337 (337)
39 3mmy_A MRNA export factor; mRN 99.9 6.3E-25 2.2E-29 215.7 24.9 193 211-454 28-329 (368)
40 3ei3_B DNA damage-binding prot 99.9 2E-24 6.8E-29 215.2 28.7 209 211-427 62-287 (383)
41 2ymu_A WD-40 repeat protein; u 99.9 2.7E-24 9.4E-29 225.6 30.9 222 216-454 338-563 (577)
42 3zwl_B Eukaryotic translation 99.9 1E-24 3.6E-29 214.2 25.9 197 214-462 24-247 (369)
43 4aez_A CDC20, WD repeat-contai 99.9 2.3E-24 7.8E-29 216.8 28.8 231 220-462 132-378 (401)
44 3vl1_A 26S proteasome regulato 99.9 4.2E-25 1.4E-29 222.3 23.4 199 213-462 130-363 (420)
45 2aq5_A Coronin-1A; WD40 repeat 99.9 9.2E-25 3.2E-29 219.5 25.2 204 215-462 74-297 (402)
46 1erj_A Transcriptional repress 99.9 1.6E-24 5.5E-29 217.5 26.6 184 213-450 156-362 (393)
47 3bg1_A Protein SEC13 homolog; 99.9 1.8E-25 6.2E-30 217.7 19.1 227 182-463 22-292 (316)
48 3dm0_A Maltose-binding peripla 99.9 1.1E-24 3.9E-29 234.7 26.9 201 214-462 374-590 (694)
49 4aow_A Guanine nucleotide-bind 99.9 5.9E-24 2E-28 207.1 27.7 229 192-424 58-339 (340)
50 3dm0_A Maltose-binding peripla 99.9 1E-24 3.4E-29 235.1 24.4 260 192-462 402-691 (694)
51 4h5i_A Guanine nucleotide-exch 99.9 2.4E-24 8.1E-29 214.4 25.1 196 219-423 130-344 (365)
52 2ymu_A WD-40 repeat protein; u 99.9 1.2E-23 4E-28 220.7 30.3 233 214-463 295-538 (577)
53 4gga_A P55CDC, cell division c 99.9 1.7E-23 5.8E-28 211.8 30.3 235 217-462 142-393 (420)
54 3dwl_C Actin-related protein 2 99.9 1.7E-25 5.9E-30 222.0 15.1 198 218-462 7-234 (377)
55 1r5m_A SIR4-interacting protei 99.9 5.7E-24 2E-28 213.1 26.3 241 214-463 141-424 (425)
56 1gxr_A ESG1, transducin-like e 99.9 2.8E-23 9.5E-28 201.6 28.6 234 219-463 48-295 (337)
57 2j04_B YDR362CP, TAU91; beta p 99.9 2.1E-24 7.2E-29 224.7 21.7 204 216-461 201-425 (524)
58 1sq9_A Antiviral protein SKI8; 99.9 7.1E-24 2.4E-28 211.5 24.6 236 214-452 54-366 (397)
59 4a11_B DNA excision repair pro 99.9 1.6E-23 5.4E-28 208.9 27.1 222 209-462 30-274 (408)
60 3zwl_B Eukaryotic translation 99.9 3E-23 1E-27 203.8 28.1 242 213-462 65-344 (369)
61 3jrp_A Fusion protein of prote 99.9 1.8E-23 6.2E-28 206.4 25.9 205 213-462 46-285 (379)
62 4h5i_A Guanine nucleotide-exch 99.9 7.6E-24 2.6E-28 210.7 23.0 149 307-463 131-342 (365)
63 1k8k_C P40, ARP2/3 complex 41 99.9 6E-23 2.1E-27 202.5 29.2 203 214-422 44-274 (372)
64 3vl1_A 26S proteasome regulato 99.9 8.5E-24 2.9E-28 212.7 22.9 196 214-462 90-320 (420)
65 2aq5_A Coronin-1A; WD40 repeat 99.9 7.5E-24 2.6E-28 212.8 21.8 199 213-461 122-339 (402)
66 3jro_A Fusion protein of prote 99.9 1E-23 3.5E-28 229.5 24.4 200 215-462 2-236 (753)
67 3odt_A Protein DOA1; ubiquitin 99.9 2.5E-23 8.4E-28 200.0 24.2 234 210-462 6-253 (313)
68 3dw8_B Serine/threonine-protei 99.9 4.4E-23 1.5E-27 209.0 27.2 240 220-462 26-371 (447)
69 4a11_B DNA excision repair pro 99.9 6.5E-23 2.2E-27 204.5 27.8 236 219-463 96-404 (408)
70 4ggc_A P55CDC, cell division c 99.9 1.7E-22 5.9E-27 194.7 29.1 234 218-462 63-313 (318)
71 1k8k_C P40, ARP2/3 complex 41 99.9 2.4E-23 8.2E-28 205.4 23.4 195 218-462 4-231 (372)
72 4e54_B DNA damage-binding prot 99.9 3.1E-24 1.1E-28 218.3 17.3 190 190-428 137-333 (435)
73 3gre_A Serine/threonine-protei 99.9 1E-23 3.4E-28 213.8 20.2 206 214-426 54-296 (437)
74 3odt_A Protein DOA1; ubiquitin 99.9 7.6E-23 2.6E-27 196.6 25.1 232 213-463 50-295 (313)
75 3i2n_A WD repeat-containing pr 99.9 1.2E-22 4E-27 199.1 26.2 238 216-462 12-289 (357)
76 3i2n_A WD repeat-containing pr 99.9 7.1E-23 2.4E-27 200.6 24.5 243 220-462 63-351 (357)
77 2oaj_A Protein SNI1; WD40 repe 99.9 3.2E-23 1.1E-27 229.6 24.5 195 219-462 14-240 (902)
78 3k26_A Polycomb protein EED; W 99.9 1.1E-23 3.9E-28 206.8 18.5 201 213-462 106-364 (366)
79 3f3f_A Nucleoporin SEH1; struc 99.9 3.9E-23 1.3E-27 200.5 22.1 205 214-425 49-340 (351)
80 3mkq_A Coatomer beta'-subunit; 99.9 2.5E-23 8.6E-28 227.2 23.0 198 213-462 4-215 (814)
81 1sq9_A Antiviral protein SKI8; 99.9 4.5E-23 1.5E-27 205.7 22.8 238 214-462 8-320 (397)
82 2pm9_A Protein WEB1, protein t 99.9 2.6E-23 9E-28 208.5 20.9 209 214-425 105-340 (416)
83 3k26_A Polycomb protein EED; W 99.9 4.9E-23 1.7E-27 202.2 22.0 196 220-463 67-317 (366)
84 1yfq_A Cell cycle arrest prote 99.9 3.1E-23 1E-27 202.4 20.3 236 217-462 6-280 (342)
85 2xyi_A Probable histone-bindin 99.9 1.1E-22 3.8E-27 206.6 25.1 211 212-463 171-409 (430)
86 2xyi_A Probable histone-bindin 99.9 5E-23 1.7E-27 209.1 21.9 204 218-462 124-351 (430)
87 2pm9_A Protein WEB1, protein t 99.9 2E-22 6.7E-27 202.1 25.8 231 220-463 65-336 (416)
88 1r5m_A SIR4-interacting protei 99.9 3.7E-22 1.3E-26 199.9 27.7 235 219-462 42-359 (425)
89 4gq1_A NUP37; propeller, trans 99.9 1.3E-23 4.3E-28 211.2 16.7 207 194-454 110-373 (393)
90 3lrv_A PRE-mRNA-splicing facto 99.9 3.3E-23 1.1E-27 203.7 19.4 221 225-454 39-274 (343)
91 3ei3_B DNA damage-binding prot 99.9 8.9E-23 3E-27 203.2 22.1 233 219-462 115-380 (383)
92 3v7d_B Cell division control p 99.9 9.3E-22 3.2E-26 200.9 29.7 238 212-462 152-419 (464)
93 4aez_A CDC20, WD repeat-contai 99.9 7.8E-23 2.7E-27 205.5 20.9 169 214-428 209-386 (401)
94 3dw8_B Serine/threonine-protei 99.9 2.4E-22 8.4E-27 203.6 24.6 210 214-426 73-377 (447)
95 2vdu_B TRNA (guanine-N(7)-)-me 99.9 5.6E-22 1.9E-26 202.5 27.1 221 216-451 96-365 (450)
96 3sfz_A APAF-1, apoptotic pepti 99.9 2E-22 7E-27 230.4 26.4 193 216-454 609-812 (1249)
97 2j04_B YDR362CP, TAU91; beta p 99.9 1.4E-23 4.7E-28 218.6 15.2 162 216-423 260-429 (524)
98 3gre_A Serine/threonine-protei 99.9 1E-22 3.5E-27 206.4 21.2 206 220-426 109-363 (437)
99 1pgu_A Actin interacting prote 99.9 9.4E-22 3.2E-26 207.2 28.7 226 213-449 54-307 (615)
100 3vu4_A KMHSV2; beta-propeller 99.9 3.9E-22 1.3E-26 197.5 23.5 201 215-424 12-273 (355)
101 3v7d_B Cell division control p 99.9 7.2E-22 2.5E-26 201.7 26.1 227 213-449 194-442 (464)
102 1p22_A F-BOX/WD-repeat protein 99.9 7.7E-22 2.6E-26 200.4 25.9 232 211-462 162-412 (435)
103 2oaj_A Protein SNI1; WD40 repe 99.9 1.5E-22 5.1E-27 224.2 22.4 174 216-425 429-667 (902)
104 2w18_A PALB2, fancn, partner a 99.9 1.3E-22 4.5E-27 196.5 18.2 158 215-420 171-355 (356)
105 3jro_A Fusion protein of prote 99.9 3.9E-22 1.3E-26 217.0 22.6 221 192-462 28-283 (753)
106 3sfz_A APAF-1, apoptotic pepti 99.9 1.8E-21 6E-26 222.6 28.7 204 212-422 647-913 (1249)
107 4gga_A P55CDC, cell division c 99.9 1.1E-21 3.9E-26 198.3 23.6 169 214-424 222-397 (420)
108 2j04_A TAU60, YPL007P, hypothe 99.9 7E-22 2.4E-26 203.0 21.7 172 220-452 83-279 (588)
109 3mkq_A Coatomer beta'-subunit; 99.9 8.6E-22 3E-26 215.0 23.7 199 213-463 46-258 (814)
110 3lrv_A PRE-mRNA-splicing facto 99.9 2.9E-21 1E-25 189.8 23.8 160 220-426 123-296 (343)
111 2ovr_B FBW7, F-BOX/WD repeat p 99.9 1.3E-20 4.3E-25 191.8 28.3 234 212-463 149-390 (445)
112 2j04_A TAU60, YPL007P, hypothe 99.9 1.1E-21 3.6E-26 201.7 20.3 214 220-462 13-252 (588)
113 4ggc_A P55CDC, cell division c 99.9 3.9E-21 1.3E-25 185.2 23.2 168 214-423 142-316 (318)
114 4gq1_A NUP37; propeller, trans 99.9 3.4E-22 1.2E-26 200.7 16.0 167 219-425 86-289 (393)
115 2ovr_B FBW7, F-BOX/WD repeat p 99.9 1.5E-20 5.1E-25 191.3 27.6 224 213-454 190-421 (445)
116 1yfq_A Cell cycle arrest prote 99.9 3.6E-21 1.2E-25 187.7 20.4 221 216-454 50-306 (342)
117 1pgu_A Actin interacting prote 99.9 2.3E-20 7.7E-25 196.6 25.9 147 308-462 445-612 (615)
118 1p22_A F-BOX/WD-repeat protein 99.9 4.1E-20 1.4E-24 187.7 26.9 223 219-462 130-363 (435)
119 2w18_A PALB2, fancn, partner a 99.9 1E-20 3.4E-25 183.3 21.1 207 221-462 110-355 (356)
120 3mmy_A MRNA export factor; mRN 99.9 5.9E-21 2E-25 187.3 19.6 199 216-422 80-346 (368)
121 2vdu_B TRNA (guanine-N(7)-)-me 99.9 3.7E-20 1.3E-24 188.9 22.2 231 222-462 4-269 (450)
122 3vu4_A KMHSV2; beta-propeller 99.8 6.5E-20 2.2E-24 181.5 21.7 200 223-423 59-337 (355)
123 1l0q_A Surface layer protein; 99.8 1.4E-18 4.8E-23 172.9 28.6 230 215-462 25-273 (391)
124 3bws_A Protein LP49; two-domai 99.8 6.7E-19 2.3E-23 177.7 21.2 183 217-453 164-357 (433)
125 2oit_A Nucleoporin 214KDA; NH2 99.8 7.1E-19 2.4E-23 179.0 18.8 169 220-423 90-279 (434)
126 2oit_A Nucleoporin 214KDA; NH2 99.8 4.1E-19 1.4E-23 180.8 14.7 201 221-454 35-254 (434)
127 2hqs_A Protein TOLB; TOLB, PAL 99.8 2.4E-17 8.2E-22 166.7 27.1 223 215-454 171-411 (415)
128 3bws_A Protein LP49; two-domai 99.8 2.1E-17 7.3E-22 166.7 25.6 202 213-422 202-432 (433)
129 1l0q_A Surface layer protein; 99.8 1.1E-16 3.9E-21 159.1 29.4 202 216-426 68-279 (391)
130 2ojh_A Uncharacterized protein 99.8 2.3E-16 7.9E-21 149.2 24.5 225 217-455 36-286 (297)
131 2hqs_A Protein TOLB; TOLB, PAL 99.7 4.4E-17 1.5E-21 164.7 16.4 184 216-454 111-324 (415)
132 1ri6_A Putative isomerase YBHE 99.7 2.5E-15 8.6E-20 145.8 21.0 190 220-454 35-244 (343)
133 2ecf_A Dipeptidyl peptidase IV 99.6 2E-14 6.9E-19 155.4 22.1 225 222-453 36-349 (741)
134 3o4h_A Acylamino-acid-releasin 99.6 4.3E-15 1.5E-19 156.4 16.0 195 221-426 20-231 (582)
135 1nir_A Nitrite reductase; hemo 99.6 2.7E-14 9.2E-19 149.3 21.5 230 211-454 168-434 (543)
136 3u4y_A Uncharacterized protein 99.6 1.2E-13 4E-18 133.9 23.5 186 216-454 34-234 (331)
137 1nir_A Nitrite reductase; hemo 99.6 8E-14 2.7E-18 145.7 21.9 240 213-454 213-492 (543)
138 1xfd_A DIP, dipeptidyl aminope 99.6 2E-14 6.9E-19 154.8 17.7 167 215-426 50-293 (723)
139 3vgz_A Uncharacterized protein 99.6 1.9E-13 6.4E-18 133.3 22.7 175 225-454 143-327 (353)
140 3vgz_A Uncharacterized protein 99.6 4.7E-13 1.6E-17 130.5 25.4 218 221-453 39-284 (353)
141 3hfq_A Uncharacterized protein 99.6 1.1E-13 3.9E-18 135.3 20.3 190 220-454 37-253 (347)
142 3u4y_A Uncharacterized protein 99.6 1.2E-13 4.1E-18 133.8 19.9 192 216-454 77-286 (331)
143 1k32_A Tricorn protease; prote 99.6 3.6E-14 1.2E-18 159.7 18.4 177 221-454 294-485 (1045)
144 1xfd_A DIP, dipeptidyl aminope 99.6 8.9E-15 3.1E-19 157.6 12.2 181 224-454 18-268 (723)
145 1ri6_A Putative isomerase YBHE 99.6 3.3E-13 1.1E-17 130.7 21.9 179 224-453 85-289 (343)
146 1pby_B Quinohemoprotein amine 99.5 7.2E-13 2.5E-17 128.0 22.4 196 224-426 35-314 (337)
147 3scy_A Hypothetical bacterial 99.5 1.6E-12 5.3E-17 128.0 25.1 220 221-454 48-319 (361)
148 2z3z_A Dipeptidyl aminopeptida 99.5 7.6E-14 2.6E-18 150.0 15.8 197 218-453 116-368 (706)
149 3hfq_A Uncharacterized protein 99.5 8.1E-13 2.8E-17 129.2 21.0 196 218-454 81-299 (347)
150 2z3z_A Dipeptidyl aminopeptida 99.5 2.2E-13 7.4E-18 146.5 17.8 179 222-453 81-324 (706)
151 1jmx_B Amine dehydrogenase; ox 99.5 1.8E-12 6.3E-17 125.9 22.5 197 224-425 44-328 (349)
152 2ecf_A Dipeptidyl peptidase IV 99.5 1.5E-12 5.2E-17 140.6 23.9 229 216-454 145-438 (741)
153 1z68_A Fibroblast activation p 99.5 3.9E-14 1.3E-18 152.7 10.6 178 227-452 20-264 (719)
154 2ojh_A Uncharacterized protein 99.5 5.2E-13 1.8E-17 125.9 16.5 141 305-454 37-186 (297)
155 3o4h_A Acylamino-acid-releasin 99.5 2.7E-13 9.3E-18 142.6 15.9 193 217-420 58-274 (582)
156 1jmx_B Amine dehydrogenase; ox 99.5 2.1E-12 7.1E-17 125.5 20.4 208 227-454 4-308 (349)
157 3scy_A Hypothetical bacterial 99.5 1.4E-11 4.8E-16 121.1 25.3 185 221-449 153-360 (361)
158 1k32_A Tricorn protease; prote 99.5 8.7E-13 3E-17 148.4 18.7 159 217-423 331-503 (1045)
159 1jof_A Carboxy-CIS,CIS-muconat 99.4 3.9E-12 1.3E-16 125.8 19.9 188 221-454 38-268 (365)
160 4a5s_A Dipeptidyl peptidase 4 99.4 5.4E-12 1.8E-16 136.8 22.0 197 223-424 17-296 (740)
161 1z68_A Fibroblast activation p 99.4 2.7E-13 9.3E-18 146.1 8.9 153 224-424 61-293 (719)
162 1pby_B Quinohemoprotein amine 99.4 5.3E-12 1.8E-16 121.8 17.0 144 235-426 2-167 (337)
163 1q7f_A NHL, brain tumor CG1071 99.4 1.3E-10 4.6E-15 110.1 25.6 224 219-452 26-262 (286)
164 3pe7_A Oligogalacturonate lyas 99.4 1.2E-11 4.2E-16 122.3 18.6 187 216-454 24-251 (388)
165 1jof_A Carboxy-CIS,CIS-muconat 99.3 1E-10 3.5E-15 115.5 22.2 161 221-425 143-344 (365)
166 1xip_A Nucleoporin NUP159; bet 99.3 2E-11 7E-16 121.1 16.3 183 224-453 39-226 (388)
167 3azo_A Aminopeptidase; POP fam 99.3 6.4E-11 2.2E-15 126.2 20.4 210 215-425 16-277 (662)
168 3fvz_A Peptidyl-glycine alpha- 99.3 5.5E-10 1.9E-14 108.6 23.9 219 222-452 23-303 (329)
169 3pe7_A Oligogalacturonate lyas 99.3 7.5E-11 2.6E-15 116.6 17.5 166 216-426 74-277 (388)
170 3azo_A Aminopeptidase; POP fam 99.3 7.9E-11 2.7E-15 125.5 18.6 159 221-421 128-322 (662)
171 1q7f_A NHL, brain tumor CG1071 99.3 5.3E-10 1.8E-14 105.9 22.4 153 221-422 119-280 (286)
172 2oiz_A Aromatic amine dehydrog 99.3 1.8E-10 6.1E-15 113.9 19.6 90 355-453 259-360 (361)
173 3e5z_A Putative gluconolactona 99.2 9.2E-10 3.2E-14 105.0 21.2 184 216-453 21-230 (296)
174 2dg1_A DRP35, lactonase; beta 99.2 1.5E-09 5.2E-14 105.1 23.0 161 216-422 38-213 (333)
175 1xip_A Nucleoporin NUP159; bet 99.2 2.8E-10 9.7E-15 112.9 16.0 135 220-410 86-232 (388)
176 3c5m_A Oligogalacturonate lyas 99.2 9.7E-10 3.3E-14 108.6 18.0 195 226-426 84-333 (396)
177 3fvz_A Peptidyl-glycine alpha- 99.1 1.1E-08 3.7E-13 99.4 24.7 201 220-422 88-322 (329)
178 2xdw_A Prolyl endopeptidase; a 99.1 2.1E-09 7.1E-14 115.8 21.0 157 220-424 122-322 (710)
179 3e5z_A Putative gluconolactona 99.1 1.9E-08 6.6E-13 95.7 24.9 204 218-426 64-290 (296)
180 3c5m_A Oligogalacturonate lyas 99.1 1.4E-10 4.9E-15 114.6 8.9 182 221-454 34-251 (396)
181 3no2_A Uncharacterized protein 99.1 1.9E-08 6.5E-13 95.4 21.7 208 233-452 4-224 (276)
182 4a5s_A Dipeptidyl peptidase 4 99.0 1.6E-09 5.4E-14 117.3 15.1 141 311-456 18-186 (740)
183 2bkl_A Prolyl endopeptidase; m 99.0 8.4E-09 2.9E-13 110.8 20.6 193 219-421 117-348 (695)
184 2dg1_A DRP35, lactonase; beta 99.0 2.4E-09 8.2E-14 103.7 14.3 174 223-453 6-194 (333)
185 2gop_A Trilobed protease; beta 99.0 1.7E-08 6E-13 97.9 17.9 105 311-424 172-293 (347)
186 3dsm_A Uncharacterized protein 99.0 3.2E-08 1.1E-12 96.1 19.7 214 223-451 44-277 (328)
187 2gop_A Trilobed protease; beta 99.0 1.5E-08 5E-13 98.5 17.0 144 223-419 59-250 (347)
188 1rwi_B Serine/threonine-protei 99.0 1.5E-07 5.1E-12 87.8 23.2 215 224-453 25-246 (270)
189 2z2n_A Virginiamycin B lyase; 98.9 7.9E-07 2.7E-11 83.7 27.5 216 218-452 10-236 (299)
190 1rwi_B Serine/threonine-protei 98.9 5.2E-08 1.8E-12 91.0 18.4 193 222-424 66-266 (270)
191 3dsm_A Uncharacterized protein 98.9 1.3E-07 4.4E-12 91.9 21.4 194 222-425 83-304 (328)
192 1yr2_A Prolyl oligopeptidase; 98.9 1.3E-07 4.6E-12 102.2 23.6 223 220-452 160-418 (741)
193 3hrp_A Uncharacterized protein 98.8 6.3E-07 2.1E-11 89.9 23.8 222 223-452 131-391 (409)
194 2oiz_A Aromatic amine dehydrog 98.8 1.9E-07 6.5E-12 92.0 19.6 87 315-404 259-360 (361)
195 2xdw_A Prolyl endopeptidase; a 98.8 1.3E-07 4.3E-12 101.8 19.8 178 225-452 173-391 (710)
196 3no2_A Uncharacterized protein 98.8 3.4E-07 1.2E-11 86.7 20.4 192 223-425 37-255 (276)
197 1qks_A Cytochrome CD1 nitrite 98.8 5.2E-07 1.8E-11 94.2 22.9 158 223-426 197-377 (567)
198 1pjx_A Dfpase, DIISOPROPYLFLUO 98.8 5.6E-07 1.9E-11 85.7 21.2 161 221-425 16-211 (314)
199 1pjx_A Dfpase, DIISOPROPYLFLUO 98.8 9.1E-07 3.1E-11 84.3 22.6 198 220-423 68-300 (314)
200 2z2n_A Virginiamycin B lyase; 98.8 6.5E-06 2.2E-10 77.4 28.1 212 221-452 55-277 (299)
201 3dr2_A Exported gluconolactona 98.7 7.4E-07 2.5E-11 85.3 20.2 158 217-424 39-226 (305)
202 3g4e_A Regucalcin; six bladed 98.7 3E-06 1E-10 80.7 24.2 181 221-452 52-253 (297)
203 3iuj_A Prolyl endopeptidase; h 98.7 4.8E-07 1.6E-11 97.1 19.9 202 219-424 125-361 (693)
204 2qc5_A Streptogramin B lactona 98.7 1.6E-05 5.3E-10 74.8 27.2 214 220-452 17-241 (300)
205 1qks_A Cytochrome CD1 nitrite 98.7 2.8E-06 9.7E-11 88.7 22.7 170 231-454 164-355 (567)
206 2qc5_A Streptogramin B lactona 98.6 2.8E-05 9.6E-10 73.0 26.8 213 221-452 60-283 (300)
207 2mad_H Methylamine dehydrogena 98.6 1.6E-05 5.5E-10 78.5 25.7 74 352-426 269-354 (373)
208 3g4e_A Regucalcin; six bladed 98.6 7.8E-06 2.7E-10 77.8 21.7 181 221-452 11-210 (297)
209 2qe8_A Uncharacterized protein 98.6 3.6E-06 1.2E-10 82.0 19.2 187 220-452 64-302 (343)
210 2ghs_A AGR_C_1268P; regucalcin 98.5 1.6E-05 5.4E-10 76.8 22.3 206 225-453 51-284 (326)
211 2ghs_A AGR_C_1268P; regucalcin 98.5 2.2E-05 7.4E-10 75.9 23.3 187 222-413 89-293 (326)
212 2qe8_A Uncharacterized protein 98.5 6.3E-06 2.1E-10 80.3 19.1 159 223-421 17-223 (343)
213 2bkl_A Prolyl endopeptidase; m 98.5 1E-06 3.5E-11 94.5 14.2 159 219-426 223-401 (695)
214 3sjl_D Methylamine dehydrogena 98.5 6.8E-06 2.3E-10 81.1 18.0 196 225-425 139-366 (386)
215 2hz6_A Endoplasmic reticulum t 98.5 1.3E-07 4.3E-12 93.6 5.6 184 233-427 8-197 (369)
216 3hrp_A Uncharacterized protein 98.4 1.2E-05 4E-10 80.6 19.9 157 221-420 217-408 (409)
217 2iwa_A Glutamine cyclotransfer 98.4 3.9E-05 1.3E-09 71.7 21.3 185 220-453 16-218 (266)
218 2ece_A 462AA long hypothetical 98.4 1.7E-05 5.9E-10 79.1 19.0 141 313-454 141-334 (462)
219 3dr2_A Exported gluconolactona 98.4 5.7E-06 1.9E-10 79.0 15.0 179 219-453 82-289 (305)
220 1yr2_A Prolyl oligopeptidase; 98.3 1.1E-05 3.8E-10 87.0 18.1 161 220-425 265-444 (741)
221 2ece_A 462AA long hypothetical 98.3 5.1E-05 1.7E-09 75.8 20.0 186 225-454 140-394 (462)
222 3sjl_D Methylamine dehydrogena 98.3 2.6E-05 8.8E-10 77.0 16.8 149 227-425 37-212 (386)
223 3nol_A Glutamine cyclotransfer 98.2 0.00019 6.4E-09 66.6 21.0 187 216-453 35-237 (262)
224 3nok_A Glutaminyl cyclase; bet 98.2 0.00011 3.6E-09 68.3 19.2 178 225-453 57-247 (268)
225 3c75_H MADH, methylamine dehyd 98.2 4.5E-05 1.5E-09 76.4 16.6 196 226-426 180-406 (426)
226 2mad_H Methylamine dehydrogena 98.1 0.00019 6.6E-09 70.7 19.6 106 314-425 70-198 (373)
227 3mbr_X Glutamine cyclotransfer 98.1 0.0012 4.2E-08 60.4 23.1 184 220-453 16-216 (243)
228 3iuj_A Prolyl endopeptidase; h 98.0 0.00016 5.5E-09 77.3 18.6 159 221-426 232-409 (693)
229 1mda_H Methylamine dehydrogena 98.0 0.00027 9.2E-09 69.4 18.6 104 321-426 223-350 (368)
230 3c75_H MADH, methylamine dehyd 98.0 0.00015 5.3E-09 72.5 16.6 174 211-427 108-300 (426)
231 1yiq_A Quinohemoprotein alcoho 98.0 0.0004 1.4E-08 74.3 20.2 106 322-428 321-511 (689)
232 2fp8_A Strictosidine synthase; 97.9 0.00038 1.3E-08 66.7 17.0 172 225-423 21-217 (322)
233 1kb0_A Quinohemoprotein alcoho 97.9 0.00091 3.1E-08 71.3 21.2 107 321-428 328-513 (677)
234 1npe_A Nidogen, entactin; glyc 97.7 0.019 6.6E-07 52.9 25.6 214 224-453 37-263 (267)
235 1fwx_A Nitrous oxide reductase 97.6 0.00036 1.2E-08 72.1 12.6 92 330-422 254-361 (595)
236 1kb0_A Quinohemoprotein alcoho 97.6 0.0013 4.5E-08 70.1 17.3 92 330-422 457-567 (677)
237 2iwa_A Glutamine cyclotransfer 97.6 0.0019 6.6E-08 60.2 16.2 114 311-427 22-140 (266)
238 2p4o_A Hypothetical protein; p 97.6 0.023 7.9E-07 53.7 23.7 150 223-422 32-198 (306)
239 4a2l_A BT_4663, two-component 97.6 0.064 2.2E-06 57.9 30.1 198 222-425 262-483 (795)
240 3q7m_A Lipoprotein YFGL, BAMB; 97.6 0.013 4.3E-07 57.0 22.4 102 320-427 239-342 (376)
241 3q7m_A Lipoprotein YFGL, BAMB; 97.6 0.0086 3E-07 58.2 21.1 185 233-428 102-302 (376)
242 3hxj_A Pyrrolo-quinoline quino 97.5 0.0017 5.7E-08 61.7 15.4 184 222-423 136-325 (330)
243 3nok_A Glutaminyl cyclase; bet 97.5 0.0018 6E-08 60.1 14.5 112 311-427 56-169 (268)
244 3mbr_X Glutamine cyclotransfer 97.5 0.0035 1.2E-07 57.4 16.3 116 310-427 21-138 (243)
245 1fwx_A Nitrous oxide reductase 97.5 0.0015 5E-08 67.5 14.8 117 311-428 278-437 (595)
246 3qqz_A Putative uncharacterize 97.5 0.041 1.4E-06 50.8 23.4 190 216-453 20-236 (255)
247 2xe4_A Oligopeptidase B; hydro 97.5 0.0017 5.8E-08 70.1 15.9 154 219-421 169-353 (751)
248 2hz6_A Endoplasmic reticulum t 97.5 1.3E-05 4.4E-10 79.0 -1.0 63 320-384 9-71 (369)
249 2p9w_A MAL S 1 allergenic prot 97.4 0.011 3.6E-07 56.7 18.8 109 312-421 65-214 (334)
250 1npe_A Nidogen, entactin; glyc 97.4 0.021 7.1E-07 52.6 20.6 137 310-453 36-179 (267)
251 3nol_A Glutamine cyclotransfer 97.4 0.0024 8E-08 59.2 13.5 116 311-428 44-161 (262)
252 1mda_H Methylamine dehydrogena 97.4 0.00033 1.1E-08 68.8 8.2 99 322-422 34-158 (368)
253 2fp8_A Strictosidine synthase; 97.4 0.013 4.3E-07 55.9 19.0 110 311-422 127-269 (322)
254 1yiq_A Quinohemoprotein alcoho 97.3 0.0033 1.1E-07 67.1 15.4 79 329-408 454-534 (689)
255 3hxj_A Pyrrolo-quinoline quino 97.3 0.0032 1.1E-07 59.7 13.9 175 234-425 107-286 (330)
256 4a2l_A BT_4663, two-component 97.3 0.1 3.5E-06 56.3 27.0 196 222-425 309-529 (795)
257 3tc9_A Hypothetical hydrolase; 97.3 0.0057 2E-07 61.3 15.8 152 224-422 138-301 (430)
258 1kv9_A Type II quinohemoprotei 97.2 0.0064 2.2E-07 64.6 16.8 58 371-428 437-494 (668)
259 1flg_A Protein (quinoprotein e 97.1 0.014 4.8E-07 60.9 17.6 58 371-428 465-522 (582)
260 2ad6_A Methanol dehydrogenase 97.0 0.022 7.4E-07 59.3 17.7 106 322-428 318-500 (571)
261 1ijq_A LDL receptor, low-densi 96.8 0.2 6.8E-06 47.5 21.5 115 311-425 78-198 (316)
262 3v9f_A Two-component system se 96.7 0.56 1.9E-05 50.4 26.8 200 221-425 311-527 (781)
263 3v64_C Agrin; beta propeller, 96.7 0.2 6.9E-06 48.3 21.1 113 312-424 118-236 (349)
264 2p4o_A Hypothetical protein; p 96.7 0.23 7.8E-06 46.7 20.8 98 312-413 171-279 (306)
265 2xbg_A YCF48-like protein; pho 96.7 0.1 3.5E-06 49.9 18.4 107 309-419 204-319 (327)
266 3amr_A 3-phytase; beta-propell 96.6 0.34 1.2E-05 46.6 21.2 111 310-421 128-262 (355)
267 1w6s_A Methanol dehydrogenase 96.6 0.083 2.8E-06 55.1 18.5 58 371-428 452-509 (599)
268 1kv9_A Type II quinohemoprotei 96.6 0.041 1.4E-06 58.4 16.0 151 234-426 117-337 (668)
269 3p5b_L Low density lipoprotein 96.5 0.4 1.4E-05 47.2 21.9 116 310-425 159-280 (400)
270 4hw6_A Hypothetical protein, I 96.4 0.07 2.4E-06 53.3 15.9 113 310-422 182-304 (433)
271 3v9f_A Two-component system se 96.4 1.3 4.5E-05 47.4 29.6 198 223-425 66-290 (781)
272 3qqz_A Putative uncharacterize 96.4 0.13 4.3E-06 47.4 16.0 116 304-421 21-150 (255)
273 3v64_C Agrin; beta propeller, 96.3 0.46 1.6E-05 45.7 20.6 136 310-452 73-214 (349)
274 3kya_A Putative phosphatase; s 96.3 0.089 3E-06 53.3 15.7 110 311-423 187-342 (496)
275 2p9w_A MAL S 1 allergenic prot 96.3 0.16 5.4E-06 48.5 16.3 143 308-453 11-197 (334)
276 3m0c_C LDL receptor, low-densi 96.2 0.44 1.5E-05 51.4 21.7 115 311-425 472-592 (791)
277 3tc9_A Hypothetical hydrolase; 96.2 0.079 2.7E-06 52.9 14.7 135 311-453 138-282 (430)
278 2xe4_A Oligopeptidase B; hydro 96.2 0.024 8.1E-07 61.0 11.5 110 311-423 175-305 (751)
279 3sov_A LRP-6, low-density lipo 96.0 0.58 2E-05 44.4 19.4 115 311-425 80-200 (318)
280 3v65_B Low-density lipoprotein 96.0 0.73 2.5E-05 45.0 20.2 136 310-452 116-257 (386)
281 3v65_B Low-density lipoprotein 95.9 1.3 4.6E-05 43.0 24.9 195 223-424 116-320 (386)
282 1k3i_A Galactose oxidase precu 95.9 0.16 5.4E-06 53.6 16.1 98 329-426 368-501 (656)
283 1flg_A Protein (quinoprotein e 95.9 0.11 3.7E-06 54.1 14.5 80 328-408 464-545 (582)
284 1ijq_A LDL receptor, low-densi 95.8 1.3 4.4E-05 41.8 22.1 116 310-425 30-155 (316)
285 3sre_A PON1, serum paraoxonase 95.8 0.65 2.2E-05 44.9 18.7 91 329-422 138-252 (355)
286 3pbp_A Nucleoporin NUP82; beta 95.5 0.12 4E-06 51.0 12.2 118 329-450 40-189 (452)
287 2ad6_A Methanol dehydrogenase 95.5 0.4 1.4E-05 49.6 17.0 108 320-428 160-341 (571)
288 4a0p_A LRP6, LRP-6, low-densit 95.4 1.4 4.9E-05 46.0 20.9 158 223-425 37-200 (628)
289 2xbg_A YCF48-like protein; pho 95.3 1.3 4.6E-05 41.9 18.9 110 309-423 162-279 (327)
290 4hw6_A Hypothetical protein, I 95.2 0.21 7.2E-06 49.8 13.3 137 311-453 140-285 (433)
291 1w6s_A Methanol dehydrogenase 95.2 0.41 1.4E-05 49.8 16.0 100 328-428 180-348 (599)
292 3ei3_A DNA damage-binding prot 95.0 3.2 0.00011 46.7 23.3 111 310-422 514-636 (1158)
293 1cru_A Protein (soluble quinop 94.9 1.5 5.1E-05 43.9 18.8 32 222-253 26-57 (454)
294 2ism_A Putative oxidoreductase 94.8 3 0.0001 40.0 21.3 56 392-452 268-326 (352)
295 3p5b_L Low density lipoprotein 94.8 3.3 0.00011 40.5 22.4 117 309-425 111-237 (400)
296 3das_A Putative oxidoreductase 94.8 1.2 4.1E-05 42.8 16.9 151 217-408 26-218 (347)
297 1tl2_A L10, protein (tachylect 94.7 0.21 7.3E-06 44.7 10.2 102 312-421 90-207 (236)
298 1tl2_A L10, protein (tachylect 94.2 0.058 2E-06 48.4 5.5 99 311-415 42-156 (236)
299 3amr_A 3-phytase; beta-propell 94.1 3.6 0.00012 39.5 18.3 125 294-421 54-209 (355)
300 1k3i_A Galactose oxidase precu 94.1 0.35 1.2E-05 50.9 12.5 112 314-426 190-327 (656)
301 3a9g_A Putative uncharacterize 94.0 1.6 5.4E-05 42.0 16.1 100 309-410 28-153 (354)
302 3a9g_A Putative uncharacterize 94.0 0.8 2.7E-05 44.2 13.8 141 223-408 29-214 (354)
303 3pbp_A Nucleoporin NUP82; beta 93.9 1.2 4.2E-05 43.9 14.7 107 311-417 67-207 (452)
304 2ism_A Putative oxidoreductase 93.9 1.6 5.5E-05 41.9 15.7 98 309-409 30-152 (352)
305 2g8s_A Glucose/sorbosone dehyd 93.8 1 3.4E-05 43.4 14.1 30 223-252 18-47 (353)
306 1n7d_A LDL receptor, low-densi 93.8 0.48 1.6E-05 50.4 12.7 114 310-425 496-617 (699)
307 3kya_A Putative phosphatase; s 93.4 1.5 5.1E-05 44.3 14.9 137 311-453 140-322 (496)
308 3s94_A LRP-6, low-density lipo 93.4 4.6 0.00016 42.0 19.3 116 310-425 84-205 (619)
309 3m0c_C LDL receptor, low-densi 93.0 3.7 0.00013 44.1 18.2 121 305-425 419-549 (791)
310 3sov_A LRP-6, low-density lipo 93.0 6.2 0.00021 37.2 19.3 114 310-425 122-241 (318)
311 1uuj_A Platelet-activating fac 91.9 0.0065 2.2E-07 45.5 -3.5 64 104-177 4-68 (88)
312 1cru_A Protein (soluble quinop 91.3 5.9 0.0002 39.5 16.3 103 309-411 26-163 (454)
313 3s94_A LRP-6, low-density lipo 91.3 15 0.00052 38.0 21.2 115 311-425 393-513 (619)
314 3das_A Putative oxidoreductase 91.2 9.6 0.00033 36.5 16.9 104 307-410 29-158 (347)
315 3ei3_A DNA damage-binding prot 91.2 16 0.00054 41.1 21.1 111 308-422 884-999 (1158)
316 1n7d_A LDL receptor, low-densi 90.8 2.8 9.5E-05 44.4 14.0 113 312-424 455-573 (699)
317 2be1_A Serine/threonine-protei 90.3 0.35 1.2E-05 46.4 5.8 109 320-428 10-136 (339)
318 3sre_A PON1, serum paraoxonase 90.0 9.7 0.00033 36.5 15.8 100 311-410 51-183 (355)
319 2g8s_A Glucose/sorbosone dehyd 89.4 5.7 0.0002 38.0 13.9 99 310-409 18-147 (353)
320 4a0p_A LRP6, LRP-6, low-densit 89.0 23 0.0008 36.7 22.2 115 310-425 389-511 (628)
321 2vpj_A Kelch-like protein 12; 88.9 9.7 0.00033 34.9 14.8 104 320-426 160-282 (301)
322 2xn4_A Kelch-like protein 2; s 88.1 6.9 0.00024 36.0 13.1 94 330-426 173-280 (302)
323 4gq2_M Nucleoporin NUP120; bet 88.0 29 0.001 38.0 19.8 35 351-386 237-271 (950)
324 3ott_A Two-component system se 87.7 30 0.001 36.5 21.7 188 222-425 62-263 (758)
325 2be1_A Serine/threonine-protei 85.4 16 0.00054 34.8 14.0 143 235-419 11-181 (339)
326 2xzh_A Clathrin heavy chain 1; 85.0 14 0.00049 35.1 13.0 119 328-454 47-165 (365)
327 2rr3_B OSBP, oxysterol-binding 84.5 0.37 1.3E-05 30.2 1.3 18 3-20 12-29 (47)
328 3sbq_A Nitrous-oxide reductase 82.4 5.5 0.00019 40.6 9.6 117 311-428 324-484 (638)
329 4gq2_M Nucleoporin NUP120; bet 81.5 33 0.0011 37.6 16.4 37 311-347 237-274 (950)
330 3f7f_A Nucleoporin NUP120; nuc 81.4 14 0.00048 38.9 12.6 37 311-348 223-259 (729)
331 3ii7_A Kelch-like protein 7; p 81.2 32 0.0011 31.3 15.7 94 330-428 169-278 (306)
332 1bpo_A Protein (clathrin); cla 79.5 39 0.0013 33.4 14.2 118 329-454 47-164 (494)
333 2zwa_A Leucine carboxyl methyl 77.4 73 0.0025 33.4 17.0 108 319-426 500-639 (695)
334 3ott_A Two-component system se 74.8 88 0.003 32.8 23.5 113 310-425 419-548 (758)
335 2xzh_A Clathrin heavy chain 1; 72.7 67 0.0023 30.5 24.4 131 294-425 184-335 (365)
336 1xi4_A Clathrin heavy chain; a 72.2 50 0.0017 37.8 14.2 187 230-427 73-294 (1630)
337 1zgk_A Kelch-like ECH-associat 70.7 63 0.0021 29.4 15.5 104 319-426 168-291 (308)
338 2xn4_A Kelch-like protein 2; s 70.7 19 0.00064 32.9 9.4 104 319-426 108-233 (302)
339 4asc_A Kelch repeat and BTB do 68.1 32 0.0011 31.6 10.4 105 319-426 148-281 (315)
340 2woz_A Kelch repeat and BTB do 68.0 73 0.0025 29.1 15.3 94 330-426 175-291 (318)
341 3ii7_A Kelch-like protein 7; p 67.9 33 0.0011 31.3 10.5 104 320-426 56-182 (306)
342 1bpo_A Protein (clathrin); cla 67.1 1E+02 0.0035 30.5 26.0 131 294-425 183-334 (494)
343 3s25_A Hypothetical 7-bladed b 66.1 83 0.0028 29.0 14.6 91 325-423 162-256 (302)
344 2vpj_A Kelch-like protein 12; 65.8 36 0.0012 30.8 10.3 103 321-426 114-235 (301)
345 2uvk_A YJHT; unknown function, 65.2 58 0.002 30.3 11.9 56 373-428 286-348 (357)
346 2wg3_C Hedgehog-interacting pr 63.3 1.2E+02 0.0041 29.9 14.3 103 310-412 14-159 (463)
347 4asc_A Kelch repeat and BTB do 61.9 94 0.0032 28.2 15.9 94 330-426 117-225 (315)
348 1zgk_A Kelch-like ECH-associat 60.2 43 0.0015 30.6 9.7 92 330-426 137-244 (308)
349 1xi4_A Clathrin heavy chain; a 59.7 93 0.0032 35.7 13.3 216 206-425 87-334 (1630)
350 2wg3_C Hedgehog-interacting pr 59.7 1.3E+02 0.0044 29.7 13.5 29 224-252 15-44 (463)
351 2woz_A Kelch repeat and BTB do 55.6 1.2E+02 0.0041 27.5 16.3 104 320-426 110-235 (318)
352 4fhn_B Nucleoporin NUP120; pro 55.4 30 0.001 38.8 8.8 35 351-386 239-273 (1139)
353 3b7f_A Glycosyl hydrolase, BNR 55.2 1E+02 0.0036 29.1 11.8 105 310-415 55-201 (394)
354 3q6k_A 43.2 kDa salivary prote 54.0 1.2E+02 0.004 29.2 11.7 90 331-421 124-252 (381)
355 2zwa_A Leucine carboxyl methyl 53.6 53 0.0018 34.4 10.0 103 321-424 453-579 (695)
356 3sbq_A Nitrous-oxide reductase 50.3 33 0.0011 35.0 7.2 91 331-422 299-408 (638)
357 4fhn_B Nucleoporin NUP120; pro 49.5 70 0.0024 35.7 10.6 36 312-347 240-276 (1139)
358 3f7f_A Nucleoporin NUP120; nuc 49.3 29 0.001 36.5 6.9 39 222-262 221-259 (729)
359 3uc1_A DNA gyrase subunit A; D 48.9 1.7E+02 0.0059 27.3 20.5 160 223-422 95-279 (327)
360 1suu_A DNA gyrase subunit A; t 48.1 1.7E+02 0.0058 27.0 19.4 103 319-423 113-232 (312)
361 3no0_A DNA gyrase subunit A; D 46.2 1.7E+02 0.0058 26.5 13.3 103 319-422 79-196 (276)
362 3b7f_A Glycosyl hydrolase, BNR 44.3 2.1E+02 0.0071 26.9 17.1 103 310-413 115-254 (394)
363 3no0_A DNA gyrase subunit A; D 42.5 1.9E+02 0.0066 26.1 20.1 158 222-422 67-246 (276)
364 2uvk_A YJHT; unknown function, 37.2 1.6E+02 0.0055 27.1 9.8 48 372-420 168-224 (357)
365 3zwu_A Alkaline phosphatase PH 32.7 1.1E+02 0.0037 31.4 8.0 58 352-410 478-549 (592)
366 4a9v_A PHOX; hydrolase, beta-p 30.7 1.4E+02 0.0047 30.6 8.1 59 351-410 477-549 (592)
367 3uc1_A DNA gyrase subunit A; D 24.0 4.3E+02 0.015 24.4 18.0 103 320-423 109-229 (327)
368 1wp5_A Topoisomerase IV; broke 22.0 4.7E+02 0.016 24.1 15.7 149 232-422 3-174 (323)
369 4a9v_A PHOX; hydrolase, beta-p 21.8 3.6E+02 0.012 27.4 9.4 59 310-369 476-549 (592)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=7.7e-32 Score=272.73 Aligned_cols=329 Identities=19% Similarity=0.310 Sum_probs=186.6
Q ss_pred ccccccCCccceeccccccccCcceeeeecccc-cCCChhhhcccCCCCccCCCchhhHHHHHHHHHHhhhcccccc--c
Q 012367 105 CFDREMDSEANCMVDELEQDQMNECVVTLEGES-NGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETC--M 181 (465)
Q Consensus 105 ~~~r~~d~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~s~~~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~--~ 181 (465)
.+.||.++.++.|.++|++.+..+.+.+++.|. ........ ......+++.|..+++++++..+.. .
T Consensus 3 ~~~~q~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~~~~~~~----------~~~~~~~~~~w~~~~~l~~~~~~~~~~~ 72 (410)
T 1vyh_C 3 LSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELD----------KKYAGLLEKKWTSVIRLQKKVMELESKL 72 (410)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCCCcchh----------hhhhchhhhhhhheeeHHHHHHHHHHHH
Confidence 467899999999999999998888887777664 21111111 1122345566676666654422211 1
Q ss_pred cccCCCCCCCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeee
Q 012367 182 SEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSF 261 (465)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~ 261 (465)
......... ..+ . ..........+.......+.+|.++|++++|+|++++||||+.||+|+|||+.++.......
T Consensus 73 ~~~~~~~~~-~~~--~--~~~~~~~~~~~~~~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~ 147 (410)
T 1vyh_C 73 NEAKEEFTS-GGP--L--GQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK 147 (410)
T ss_dssp ------------------------CCCCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC
T ss_pred HHHHHHHhc-cCC--c--cccCCccccccCCCceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 111000000 000 0 11111111222333456788999999999999999999999999999999999876655443
Q ss_pred cCCCCcccccCCCeEEeccCCCCceeEecCC--ceeeec-CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeC
Q 012367 262 TDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD--EVFQIE-ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV 337 (465)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~ 337 (465)
.+...+. .+.+...+...+...... .+|++. ...+..+.+|...|.+++|+|++ +|++|+.|++|++||+
T Consensus 148 ~h~~~V~------~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~ 221 (410)
T 1vyh_C 148 GHTDSVQ------DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 221 (410)
T ss_dssp CCSSCEE------EEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred ccCCcEE------EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 3222211 122222111111111111 344443 35677889999999999999975 8999999999999999
Q ss_pred CCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeC-------------
Q 012367 338 GCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPD------------- 402 (465)
Q Consensus 338 ~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spd------------- 402 (465)
.++.++..+ .|...|.++.|+| ++.+|++|+.|++|++||+.++.... +.+|...|.+++|+|+
T Consensus 222 ~~~~~~~~~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~ 300 (410)
T 1vyh_C 222 QTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 300 (410)
T ss_dssp TTCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred CCCcEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhcccc
Confidence 999999988 5888999999999 99999999999999999999877654 7789999999999996
Q ss_pred -------CCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc------c-ceeeeec
Q 012367 403 -------GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY------D-NFRRFQT 462 (465)
Q Consensus 403 -------g~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~------d-~~~~~~~ 462 (465)
|.+|++|+.||+|++||+.++... ..+.. +...|+++.|+|+|.+ | ++++|+.
T Consensus 301 ~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~-~~~~~------h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~ 367 (410)
T 1vyh_C 301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL-MTLVG------HDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367 (410)
T ss_dssp -------CCEEEEEETTSEEEEEETTTTEEE-EEEEC------CSSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred ccccCCCCCEEEEEeCCCeEEEEECCCCceE-EEEEC------CCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 678999999999999999987643 23322 3468999999998765 4 3788875
No 2
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.97 E-value=1.9e-29 Score=249.45 Aligned_cols=194 Identities=17% Similarity=0.258 Sum_probs=164.2
Q ss_pred hhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (465)
Q Consensus 217 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (465)
.+.+|.+.|++|+|+|+|++||||+.||+|+|||+.++
T Consensus 122 ~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~------------------------------------------ 159 (344)
T 4gqb_B 122 CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ------------------------------------------ 159 (344)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------------------------------------------
T ss_pred cccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC------------------------------------------
Confidence 35689999999999999999999999999999999874
Q ss_pred ecCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeEEec---CCCceEEEEEccCCCCEEEEEeCC
Q 012367 297 IEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSID 371 (465)
Q Consensus 297 ~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~~~~---h~~~V~~i~fsp~~~~~l~sgs~D 371 (465)
+++..+.+|.+.|.+++|++++ +|++++.|++|++||+++++++..+. +...+++++|+|.++++|++|+.|
T Consensus 160 ---~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d 236 (344)
T 4gqb_B 160 ---VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN 236 (344)
T ss_dssp ---EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETT
T ss_pred ---cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccC
Confidence 3456778999999999999864 78999999999999999999888873 556799999999778899999999
Q ss_pred CcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCC-CEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEe
Q 012367 372 GKVRIWGVCEKRVVD-WADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGR 449 (465)
Q Consensus 372 g~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg-~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~ 449 (465)
++|+|||+++++.+. +.+|...|++++|+|+| ++|++|+.||+|+|||+.++++. .. . .+...|++++|+
T Consensus 237 g~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~--~~--~----~H~~~V~~v~~s 308 (344)
T 4gqb_B 237 GTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF--RS--Q----AHRDFVRDATWS 308 (344)
T ss_dssp SEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE--EE--C----CCSSCEEEEEEC
T ss_pred CcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE--EE--c----CCCCCEEEEEEe
Confidence 999999999877654 78899999999999998 57999999999999999887542 22 2 245789999999
Q ss_pred ecCC-------ccc-eeeeecC
Q 012367 450 ISKN-------YDN-FRRFQTP 463 (465)
Q Consensus 450 p~gs-------~d~-~~~~~~p 463 (465)
|++. +|+ +++|.+|
T Consensus 309 p~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 309 PLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp SSSTTEEEEEETTSCEEEEECC
T ss_pred CCCCeEEEEEcCCCeEEEEECC
Confidence 8753 344 6777765
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.97 E-value=1.8e-28 Score=239.90 Aligned_cols=253 Identities=15% Similarity=0.235 Sum_probs=190.3
Q ss_pred cchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccC
Q 012367 193 KANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAK 272 (465)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~ 272 (465)
....+++|..... .......+.+|...|++++|+|++.+++||+.|++|++||+.++..............
T Consensus 56 ~D~~v~vW~~~~~-----~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~---- 126 (321)
T 3ow8_A 56 LDDLVKVWKWRDE-----RLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAW---- 126 (321)
T ss_dssp TTSCEEEEEEETT-----EEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCC----
T ss_pred CCCCEEEEECCCC-----CeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEE----
Confidence 3455566643322 1123346789999999999999999999999999999999998876655443222111
Q ss_pred CCeEEeccCCCCceeEecCC--ceeeec-CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-
Q 012367 273 EGKIKFGKKKSSHVPVVIPD--EVFQIE-ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD- 347 (465)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~- 347 (465)
.+.+.......+...... .+|.+. ......+..|...|.+++|+|++ +|++|+.|++|++||+.+++++..+.
T Consensus 127 --~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~ 204 (321)
T 3ow8_A 127 --TLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG 204 (321)
T ss_dssp --CEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred --EEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc
Confidence 111111111111111111 123332 34556778899999999999985 89999999999999999999999884
Q ss_pred CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367 348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK 426 (465)
Q Consensus 348 h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~ 426 (465)
|...|++++|+| ++++|++|+.|++|+|||++++.... +.+|...|.+++|+|++++|++|+.||+|++||+.+++..
T Consensus 205 h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~ 283 (321)
T 3ow8_A 205 HAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV 283 (321)
T ss_dssp CSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred cCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEE
Confidence 888999999999 99999999999999999999877664 7789999999999999999999999999999999887553
Q ss_pred eeEeeecCcccccCCceeeEEEeecCC------cc-ceeeeecCC
Q 012367 427 LEKVDFHDRKKTSGNKITGIQGRISKN------YD-NFRRFQTPY 464 (465)
Q Consensus 427 ~~~~~~~~~~~~~~~~It~~~f~p~gs------~d-~~~~~~~p~ 464 (465)
. .+.. +...|.++.|+|++. .| .+++|+.|+
T Consensus 284 ~-~~~~------h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p~ 321 (321)
T 3ow8_A 284 H-TFFD------HQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCPI 321 (321)
T ss_dssp E-EECC------CSSCEEEEEECTTSSEEEEEETTCCEEEEECC-
T ss_pred E-EEcC------CCCcEEEEEECCCCCEEEEEeCCCeEEEEeCCC
Confidence 2 2222 346899999999864 34 489999885
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.97 E-value=1.2e-28 Score=242.75 Aligned_cols=239 Identities=21% Similarity=0.387 Sum_probs=182.8
Q ss_pred ccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (465)
Q Consensus 212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (465)
+...+++.+|.++|++++|+|++++||||+.||+|+|||+.+.............+.. +.+.............
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~------~~~s~~~~~l~s~~~d 118 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT------CAYAPSGNYVACGGLD 118 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEE------EEECTTSSEEEEEETT
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEE------EEECCCCCEEEEEeCC
Confidence 3455788999999999999999999999999999999999887665544333222111 1111111111111111
Q ss_pred C--ceeeecC-----CcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCC
Q 012367 292 D--EVFQIEE-----SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDN 363 (465)
Q Consensus 292 ~--~~~~~~~-----~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~ 363 (465)
. .+|.+.. .....+.+|.+.|.++.|++++.+++++.|++|++||+.+++++..+ .|...|++++|+| +++
T Consensus 119 ~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~ 197 (340)
T 1got_B 119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTR 197 (340)
T ss_dssp CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSS
T ss_pred CeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECC-CCC
Confidence 1 1222221 23456789999999999999999999999999999999999999888 4889999999999 999
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCc
Q 012367 364 YFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (465)
Q Consensus 364 ~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 442 (465)
+|++|+.|++|++||++++.... +.+|...|++++|+|++++|++|+.||+|++||+..++... .+... .....
T Consensus 198 ~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~-~~~~~----~~~~~ 272 (340)
T 1got_B 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM-TYSHD----NIICG 272 (340)
T ss_dssp EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-EECCT----TCCSC
T ss_pred EEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEE-EEccC----Ccccc
Confidence 99999999999999999887664 77899999999999999999999999999999998765432 22111 12346
Q ss_pred eeeEEEeecCCc------c-ceeeeec
Q 012367 443 ITGIQGRISKNY------D-NFRRFQT 462 (465)
Q Consensus 443 It~~~f~p~gs~------d-~~~~~~~ 462 (465)
|+++.|+|+|.+ | ++++|+.
T Consensus 273 v~~~~~s~~g~~l~~g~~d~~i~vwd~ 299 (340)
T 1got_B 273 ITSVSFSKSGRLLLAGYDDFNCNVWDA 299 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred eEEEEECCCCCEEEEECCCCeEEEEEc
Confidence 999999998754 3 4777764
No 5
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.97 E-value=2.1e-28 Score=244.81 Aligned_cols=246 Identities=24% Similarity=0.393 Sum_probs=183.6
Q ss_pred ccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccccc--CCCeEEeccCCCCcee
Q 012367 210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNA--KEGKIKFGKKKSSHVP 287 (465)
Q Consensus 210 ~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 287 (465)
..+.+.++|.+|.++|++++|+|++++||||+.||+|+|||+.+.............+.... ..+.............
T Consensus 54 ~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~ 133 (380)
T 3iz6_a 54 TDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACS 133 (380)
T ss_dssp CCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCE
T ss_pred ceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEE
Confidence 34556788999999999999999999999999999999999998776655544333221111 1111111111111111
Q ss_pred EecCCceeeec--------CCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEe------cCCCc
Q 012367 288 VVIPDEVFQIE--------ESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF------DHHNY 351 (465)
Q Consensus 288 ~~~~~~~~~~~--------~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~------~h~~~ 351 (465)
+|.+. ......+.+|.+.|.++.|+|+ ..|++|+.|++|++||+.+++++..+ .|...
T Consensus 134 ------iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~ 207 (380)
T 3iz6_a 134 ------IFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTAD 207 (380)
T ss_dssp ------EEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSC
T ss_pred ------EEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccC
Confidence 22221 1234567899999999999985 37999999999999999999998877 37889
Q ss_pred eEEEEEccCCCCEEEEEeCCCcEEEEeCCC-Ce-EEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeE
Q 012367 352 VTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK 429 (465)
Q Consensus 352 V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~-~~-~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~ 429 (465)
|.+++|+|.++++|++|+.|++|++||++. +. +..+.+|...|++++|+|+|++|++|+.||+|++||+.++.... .
T Consensus 208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~-~ 286 (380)
T 3iz6_a 208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ-V 286 (380)
T ss_dssp EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEE-E
T ss_pred eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEE-E
Confidence 999999987899999999999999999974 33 44578899999999999999999999999999999999876532 2
Q ss_pred eeecC-cccccCCceeeEEEeecCCc------c-ceeeeec
Q 012367 430 VDFHD-RKKTSGNKITGIQGRISKNY------D-NFRRFQT 462 (465)
Q Consensus 430 ~~~~~-~~~~~~~~It~~~f~p~gs~------d-~~~~~~~ 462 (465)
+..+. ........|+++.|+|+|.+ | .+++|++
T Consensus 287 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~ 327 (380)
T 3iz6_a 287 YNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDT 327 (380)
T ss_dssp ECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEET
T ss_pred ecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEEC
Confidence 22221 11122345899999998754 3 4677764
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.97 E-value=3.5e-28 Score=235.59 Aligned_cols=237 Identities=18% Similarity=0.262 Sum_probs=178.1
Q ss_pred cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (465)
Q Consensus 213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (465)
...+++.+|.+.|++++|+|+|++||+|+.||+|+|||+.++............+.. +.+.......+......
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~------~~~~~~~~~l~s~s~d~ 77 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA------GKFIARKNWIIVGSDDF 77 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE------EEEEGGGTEEEEEETTS
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEE------EEEeCCCCEEEEECCCC
Confidence 345678899999999999999999999999999999999987765554433322111 11111111111111111
Q ss_pred --ceeee-cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCC-eEeEEe-cCCCceEEEEEccCCCCEEE
Q 012367 293 --EVFQI-EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN-QCLNVF-DHHNYVTCVQFNPIDDNYFI 366 (465)
Q Consensus 293 --~~~~~-~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~-~~l~~~-~h~~~V~~i~fsp~~~~~l~ 366 (465)
.+|++ ....+..+.+|.+.|.+++|+|++ +|++|+.|++|++||+.++ .+...+ .|...|++++|+|.++.+|+
T Consensus 78 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~ 157 (304)
T 2ynn_A 78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA 157 (304)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEE
T ss_pred EEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEE
Confidence 23333 245677899999999999999975 8999999999999999887 445555 58999999999997789999
Q ss_pred EEeCCCcEEEEeCCCCeEE-e-cccCCCCeEEEEEee--CCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCc
Q 012367 367 SGSIDGKVRIWGVCEKRVV-D-WADVRDVISAICYIP--DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (465)
Q Consensus 367 sgs~Dg~I~iwd~~~~~~~-~-~~~~~~~V~sv~~sp--dg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 442 (465)
+|+.|++|++||+.++... . ..++...|..++|+| ++.+|++|+.||+|++||+.+++.. ..+.. +...
T Consensus 158 sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~-~~~~~------h~~~ 230 (304)
T 2ynn_A 158 SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV-ATLEG------HMSN 230 (304)
T ss_dssp EEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEE-EEEEC------CSSC
T ss_pred EEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccc-eeeCC------CCCC
Confidence 9999999999999775433 2 345668899999987 7789999999999999999987543 23333 3467
Q ss_pred eeeEEEeecCC------cc-ceeeeec
Q 012367 443 ITGIQGRISKN------YD-NFRRFQT 462 (465)
Q Consensus 443 It~~~f~p~gs------~d-~~~~~~~ 462 (465)
|+.+.|+|++. .| ++++|+.
T Consensus 231 v~~~~~~p~~~~l~s~s~Dg~i~iWd~ 257 (304)
T 2ynn_A 231 VSFAVFHPTLPIIISGSEDGTLKIWNS 257 (304)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 99999999853 34 4788875
No 7
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.97 E-value=6.9e-28 Score=238.89 Aligned_cols=239 Identities=19% Similarity=0.330 Sum_probs=179.9
Q ss_pred cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (465)
Q Consensus 213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (465)
...++|.+|.++|++|+|+|++++|||||.||+|+|||..+.........+...+ ..+.+...+...+......
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v------~~~~~sp~g~~lasg~~d~ 128 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWV------MACAYAPSGCAIACGGLDN 128 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCC------CEEEECTTSSEEEEESTTS
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCE------EEEEECCCCCEEEEeeCCC
Confidence 4567889999999999999999999999999999999998766554443322211 1111111111111111111
Q ss_pred c--eeeec-------CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccC-
Q 012367 293 E--VFQIE-------ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPI- 360 (465)
Q Consensus 293 ~--~~~~~-------~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~- 360 (465)
. +|.+. ......+.+|...|.+++|+|++ .|++++.|++|++||+.+++++..+ .|...|.+++|+|.
T Consensus 129 ~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 208 (354)
T 2pbi_B 129 KCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE 208 (354)
T ss_dssp EEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCS
T ss_pred CEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCC
Confidence 1 12111 13456678899999999999975 8999999999999999999999988 58899999999883
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCccccc
Q 012367 361 DDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS 439 (465)
Q Consensus 361 ~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~ 439 (465)
++++|++|+.|++|++||+++++.+. +..|...|++++|+|++..|++|+.||+|++||++...... .+..+ ..
T Consensus 209 ~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~-~~~~~----~~ 283 (354)
T 2pbi_B 209 TGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVA-IYSKE----SI 283 (354)
T ss_dssp SCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-EECCT----TC
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE-EEcCC----Cc
Confidence 36899999999999999999987765 67899999999999999999999999999999998764321 22111 12
Q ss_pred CCceeeEEEeecCCc------c-ceeeeec
Q 012367 440 GNKITGIQGRISKNY------D-NFRRFQT 462 (465)
Q Consensus 440 ~~~It~~~f~p~gs~------d-~~~~~~~ 462 (465)
...++.+.|+|++.+ | ++++|++
T Consensus 284 ~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~ 313 (354)
T 2pbi_B 284 IFGASSVDFSLSGRLLFAGYNDYTINVWDV 313 (354)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ccceeEEEEeCCCCEEEEEECCCcEEEEEC
Confidence 346889999998754 3 4788875
No 8
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.96 E-value=9.6e-28 Score=242.63 Aligned_cols=237 Identities=16% Similarity=0.341 Sum_probs=181.7
Q ss_pred cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (465)
Q Consensus 213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (465)
...+.+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+.............+. .+.+..............
T Consensus 141 ~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~------~v~~~p~~~~l~s~s~D~ 214 (410)
T 1vyh_C 141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS------SVSIMPNGDHIVSASRDK 214 (410)
T ss_dssp CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEE------EEEECSSSSEEEEEETTS
T ss_pred cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEE------EEEEeCCCCEEEEEeCCC
Confidence 34567889999999999999999999999999999999988765544332222211 111211111111111111
Q ss_pred --ceeee-cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCC------
Q 012367 293 --EVFQI-EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPID------ 361 (465)
Q Consensus 293 --~~~~~-~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~------ 361 (465)
.+|++ ...++..+.+|...|.+++++|++ +|++|+.|++|++||+.++.+...+ .|...|.+++|+|..
T Consensus 215 ~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 294 (410)
T 1vyh_C 215 TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS 294 (410)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGG
T ss_pred eEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchh
Confidence 13333 245677889999999999999975 8999999999999999999998888 588999999999921
Q ss_pred -------------CCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceee
Q 012367 362 -------------DNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL 427 (465)
Q Consensus 362 -------------~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~ 427 (465)
+.+|++|+.|++|++||++++..+. +.+|...|++++|+|+|++|++|+.||+|++||+.+++..
T Consensus 295 ~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~- 373 (410)
T 1vyh_C 295 EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM- 373 (410)
T ss_dssp GCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCC-
T ss_pred hhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceE-
Confidence 6799999999999999999887664 7789999999999999999999999999999999876542
Q ss_pred eEeeecCcccccCCceeeEEEeecCC------ccc-eeeeec
Q 012367 428 EKVDFHDRKKTSGNKITGIQGRISKN------YDN-FRRFQT 462 (465)
Q Consensus 428 ~~~~~~~~~~~~~~~It~~~f~p~gs------~d~-~~~~~~ 462 (465)
..+..| ...|+++.|+|++. .|+ +++|+.
T Consensus 374 ~~~~~h------~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 374 KTLNAH------EHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEECC------SSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEcCC------CCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 233333 36799999999854 344 666653
No 9
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.96 E-value=1.8e-27 Score=230.66 Aligned_cols=199 Identities=29% Similarity=0.573 Sum_probs=169.7
Q ss_pred ccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (465)
Q Consensus 212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (465)
.....++.+|.++|++++|+|+|++||+|+.||+|++|++.++.
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~------------------------------------ 56 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK------------------------------------ 56 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC------------------------------------
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc------------------------------------
Confidence 34456788999999999999999999999999999999987632
Q ss_pred CceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEe
Q 012367 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS 369 (465)
Q Consensus 292 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs 369 (465)
....+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+ .|...|.+++|+| ++++|++|+
T Consensus 57 ---------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~ 126 (312)
T 4ery_A 57 ---------FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 126 (312)
T ss_dssp ---------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEE
T ss_pred ---------cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEe
Confidence 244567899999999999975 8999999999999999999998888 4889999999999 999999999
Q ss_pred CCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEE
Q 012367 370 IDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQG 448 (465)
Q Consensus 370 ~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f 448 (465)
.|+.|++||+++++.+. +..|...|.+++|+|++++|++|+.||.|++||+.+++....... .....++.+.|
T Consensus 127 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~------~~~~~~~~~~~ 200 (312)
T 4ery_A 127 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID------DDNPPVSFVKF 200 (312)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC------SSCCCEEEEEE
T ss_pred CCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEec------cCCCceEEEEE
Confidence 99999999999887664 677899999999999999999999999999999988765332211 12357888999
Q ss_pred eecCCc------c-ceeeeec
Q 012367 449 RISKNY------D-NFRRFQT 462 (465)
Q Consensus 449 ~p~gs~------d-~~~~~~~ 462 (465)
+|++.+ | .+++|+.
T Consensus 201 ~~~~~~l~~~~~d~~i~iwd~ 221 (312)
T 4ery_A 201 SPNGKYILAATLDNTLKLWDY 221 (312)
T ss_dssp CTTSSEEEEEETTTEEEEEET
T ss_pred CCCCCEEEEEcCCCeEEEEEC
Confidence 988654 3 3677765
No 10
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.96 E-value=9.2e-28 Score=236.96 Aligned_cols=200 Identities=26% Similarity=0.422 Sum_probs=165.0
Q ss_pred cchhhhccCCC-cEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367 213 YTSQEIQAHKG-CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (465)
Q Consensus 213 ~~~~~l~~H~~-~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (465)
.+.+++.+|.+ .|++++|+|+|++||||+.|++|+|||+.+....+.
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~-------------------------------- 53 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK-------------------------------- 53 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEE--------------------------------
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceee--------------------------------
Confidence 45577889988 999999999999999999999999999876432110
Q ss_pred CceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCC--eEeEEe-cCCCceEEEEEccCCCCEEEE
Q 012367 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN--QCLNVF-DHHNYVTCVQFNPIDDNYFIS 367 (465)
Q Consensus 292 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~--~~l~~~-~h~~~V~~i~fsp~~~~~l~s 367 (465)
.....+|...|.+++|+|++ +|++|+.|++|++||+..+ .++..+ .|...|++++|+| ++++|++
T Consensus 54 ----------~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s 122 (345)
T 3fm0_A 54 ----------SVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLAT 122 (345)
T ss_dssp ----------EEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEE
T ss_pred ----------eeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEE
Confidence 11235799999999999975 8999999999999999876 456666 5899999999999 9999999
Q ss_pred EeCCCcEEEEeCCCCe----EEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee-EeeecCcccccCCc
Q 012367 368 GSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNK 442 (465)
Q Consensus 368 gs~Dg~I~iwd~~~~~----~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~ 442 (465)
|+.|++|++||+.++. +..+.+|...|.+++|+|++++|++|+.||+|++||+..+..... .+.. +...
T Consensus 123 ~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~------h~~~ 196 (345)
T 3fm0_A 123 CSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEG------HEST 196 (345)
T ss_dssp EETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECC------CSSC
T ss_pred EECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecC------CCCc
Confidence 9999999999998653 224678999999999999999999999999999999988754322 3322 3468
Q ss_pred eeeEEEeecCCc------c-ceeeee
Q 012367 443 ITGIQGRISKNY------D-NFRRFQ 461 (465)
Q Consensus 443 It~~~f~p~gs~------d-~~~~~~ 461 (465)
|+++.|+|+|.+ | ++++|+
T Consensus 197 v~~l~~sp~g~~l~s~s~D~~v~iW~ 222 (345)
T 3fm0_A 197 VWSLAFDPSGQRLASCSDDRTVRIWR 222 (345)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCeEEEec
Confidence 999999998654 4 377776
No 11
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.96 E-value=1.8e-27 Score=229.71 Aligned_cols=199 Identities=19% Similarity=0.323 Sum_probs=162.1
Q ss_pred hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (465)
..+.+|.+.|++++|+|+|++||||+.|++|+||++....
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~---------------------------------------- 42 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET---------------------------------------- 42 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC----------------------------------------
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC----------------------------------------
Confidence 3567999999999999999999999999999999986421
Q ss_pred eecCCcceeeeccccceEEEEecC---CCEEEEEeCCCeEEEEeCCCCe--EeEEe-cCCCceEEEEEccCC--CCEEEE
Q 012367 296 QIEESPLQELHGHKGDVLDLAWSN---SNYLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPID--DNYFIS 367 (465)
Q Consensus 296 ~~~~~~~~~~~gh~~~V~~l~~s~---~~~l~s~s~DgtV~lWD~~~~~--~l~~~-~h~~~V~~i~fsp~~--~~~l~s 367 (465)
.+++..+.+|.+.|.+++|++ +.+|+||+.|++|++||+.++. .+..+ .|...|.+++|+| + +.+|++
T Consensus 43 ---~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~g~~l~s 118 (297)
T 2pm7_B 43 ---HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPMLLV 118 (297)
T ss_dssp ---BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECC-GGGCSEEEE
T ss_pred ---cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCc-CCCCcEEEE
Confidence 134667889999999999985 3599999999999999998874 45555 4889999999999 6 789999
Q ss_pred EeCCCcEEEEeCCCCe---EEecccCCCCeEEEEEeeC-------------CCEEEEEEcCCcEEEEEecCCceeee-Ee
Q 012367 368 GSIDGKVRIWGVCEKR---VVDWADVRDVISAICYIPD-------------GKGFIVGSITGTCHFYKASGNDLKLE-KV 430 (465)
Q Consensus 368 gs~Dg~I~iwd~~~~~---~~~~~~~~~~V~sv~~spd-------------g~~l~sgs~dG~v~iwd~~~~~~~~~-~~ 430 (465)
|+.|++|++||++++. ...+.+|...|.+++|+|+ +++|++|+.||+|++||+.++..... ..
T Consensus 119 ~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~ 198 (297)
T 2pm7_B 119 ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES 198 (297)
T ss_dssp EETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEE
T ss_pred EECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEE
Confidence 9999999999998753 3456789999999999997 57999999999999999987653222 11
Q ss_pred eecCcccccCCceeeEEEeecC---------Cccc-eeeeec
Q 012367 431 DFHDRKKTSGNKITGIQGRISK---------NYDN-FRRFQT 462 (465)
Q Consensus 431 ~~~~~~~~~~~~It~~~f~p~g---------s~d~-~~~~~~ 462 (465)
.+.+ +...|.+++|+|++ +.|+ +++|+.
T Consensus 199 ~l~~----H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~ 236 (297)
T 2pm7_B 199 TLEG----HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ 236 (297)
T ss_dssp EECC----CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred EecC----CCCceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence 2222 45789999999974 3353 677764
No 12
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.96 E-value=1.3e-27 Score=233.16 Aligned_cols=203 Identities=20% Similarity=0.343 Sum_probs=171.6
Q ss_pred ccchhhhccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec
Q 012367 212 LYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 290 (465)
Q Consensus 212 ~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (465)
+....+|.+|.++|++++|+|++ ++|+||+.|++|++|++......
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~--------------------------------- 53 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK--------------------------------- 53 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE---------------------------------
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc---------------------------------
Confidence 34456789999999999999965 79999999999999998642110
Q ss_pred CCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEE
Q 012367 291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISG 368 (465)
Q Consensus 291 ~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sg 368 (465)
...++..+.+|...|.+++|+|++ +|++|+.|++|++||+.+++++..+ .|...|.+++|+| ++.+|++|
T Consensus 54 -------~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~ 125 (319)
T 3frx_A 54 -------FGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISG 125 (319)
T ss_dssp -------EEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSCEEEEE
T ss_pred -------ccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcC-CCCEEEEE
Confidence 013467788999999999999975 8999999999999999999999888 5999999999999 99999999
Q ss_pred eCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeC------CCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCc
Q 012367 369 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPD------GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (465)
Q Consensus 369 s~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spd------g~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 442 (465)
+.|++|++||++...+..+.+|...|.+++|+|. +..|++|+.||.|++||+...+... .+. .+...
T Consensus 126 s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~------~h~~~ 198 (319)
T 3frx_A 126 SRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA-DFI------GHNSN 198 (319)
T ss_dssp ETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEE-EEC------CCCSC
T ss_pred eCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhe-eec------CCCCc
Confidence 9999999999998888888999999999999995 4589999999999999998765432 221 24578
Q ss_pred eeeEEEeecCCc------c-ceeeeec
Q 012367 443 ITGIQGRISKNY------D-NFRRFQT 462 (465)
Q Consensus 443 It~~~f~p~gs~------d-~~~~~~~ 462 (465)
|+++.|+|++.+ | .+++|+.
T Consensus 199 v~~~~~sp~g~~l~s~~~dg~i~iwd~ 225 (319)
T 3frx_A 199 INTLTASPDGTLIASAGKDGEIMLWNL 225 (319)
T ss_dssp EEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 999999998754 4 4778875
No 13
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.96 E-value=2.3e-27 Score=252.19 Aligned_cols=206 Identities=21% Similarity=0.297 Sum_probs=158.8
Q ss_pred cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeee--eeecCCCCcccccCCCeEEeccCCCCceeEec
Q 012367 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASC--KSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 290 (465)
Q Consensus 213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (465)
.....+.+|.+.|++++|+|+|++||||+.||+|+|||+.+..... ........+ ..+.+...+...+....
T Consensus 50 ~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v------~~v~fs~dg~~l~~~~~ 123 (611)
T 1nr0_A 50 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPV------KDISWDSESKRIAAVGE 123 (611)
T ss_dssp SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCE------EEEEECTTSCEEEEEEC
T ss_pred ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCce------EEEEECCCCCEEEEEEC
Confidence 3456788999999999999999999999999999999996543221 111111111 11122211111111111
Q ss_pred CC----ceeee-cCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCC
Q 012367 291 PD----EVFQI-EESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDD 362 (465)
Q Consensus 291 ~~----~~~~~-~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~ 362 (465)
.. .++.+ .......+.+|...|.+++|+|++ .|++|+.|++|++||..+++++..+ .|...|++++|+| ++
T Consensus 124 ~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fsp-dg 202 (611)
T 1nr0_A 124 GRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP-DG 202 (611)
T ss_dssp CSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT-TS
T ss_pred CCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECC-CC
Confidence 00 11111 234566788999999999999975 6999999999999999999998888 5999999999999 99
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEecc--------cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 363 NYFISGSIDGKVRIWGVCEKRVVDWA--------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 363 ~~l~sgs~Dg~I~iwd~~~~~~~~~~--------~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
++|++|+.|++|++||+.+++..... +|...|.+++|+|+|++|++|+.||+|++||+.+++.
T Consensus 203 ~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~ 273 (611)
T 1nr0_A 203 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV 273 (611)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCce
Confidence 99999999999999999888766532 7999999999999999999999999999999987754
No 14
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.96 E-value=5.3e-27 Score=228.95 Aligned_cols=241 Identities=18% Similarity=0.287 Sum_probs=184.5
Q ss_pred chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC-
Q 012367 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD- 292 (465)
Q Consensus 214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 292 (465)
+.+.+.+|...|++++|+|+|++|+||+.|++|+|||+.++............+.. +.+..............
T Consensus 57 ~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~------~~~~~~~~~l~s~s~D~~ 130 (319)
T 3frx_A 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS------VDIDKKASMIISGSRDKT 130 (319)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE------EEECTTSCEEEEEETTSC
T ss_pred cceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEE------EEEcCCCCEEEEEeCCCe
Confidence 34678899999999999999999999999999999999998776555443332221 11111111111111111
Q ss_pred -ceeeecCCcceeeeccccceEEEEecCCC-------EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCC
Q 012367 293 -EVFQIEESPLQELHGHKGDVLDLAWSNSN-------YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDN 363 (465)
Q Consensus 293 -~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-------~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~ 363 (465)
.+|++....+..+.+|...|.+++|+|.. .+++++.|++|++||+.++++...+ .|...|++++|+| +++
T Consensus 131 i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp-~g~ 209 (319)
T 3frx_A 131 IKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGT 209 (319)
T ss_dssp EEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECT-TSS
T ss_pred EEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcC-CCC
Confidence 34666677788899999999999999742 7999999999999999999988887 6999999999999 999
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeE-eeecCcccccCCc
Q 012367 364 YFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK-VDFHDRKKTSGNK 442 (465)
Q Consensus 364 ~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~ 442 (465)
+|++|+.|++|+|||+.+++.+....+...|.+++|+|++.+|++++.+ .+++|++....+.... ..+.+....+...
T Consensus 210 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (319)
T 3frx_A 210 LIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPH 288 (319)
T ss_dssp EEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCC
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcc
Confidence 9999999999999999999888766677889999999999999988765 5999999876543221 1122222334567
Q ss_pred eeeEEEeecCCc------c-ceeeeec
Q 012367 443 ITGIQGRISKNY------D-NFRRFQT 462 (465)
Q Consensus 443 It~~~f~p~gs~------d-~~~~~~~ 462 (465)
+.++.|+|+|.+ | .+++|++
T Consensus 289 v~~~~~spdg~~l~sg~~Dg~i~vWd~ 315 (319)
T 3frx_A 289 AVSLAWSADGQTLFAGYTDNVIRVWQV 315 (319)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred eeEEEECCCCCEEEEeecCceEEEEEE
Confidence 899999999764 4 3778875
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.96 E-value=4.1e-27 Score=231.71 Aligned_cols=226 Identities=19% Similarity=0.342 Sum_probs=170.6
Q ss_pred chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceee----eeeecCCCCcccccCCCeEEeccCCCCceeEe
Q 012367 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAAS----CKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 289 (465)
Q Consensus 214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (465)
..+.+..|.+.|.+++|+|+|++||+|+.|+.|++|++.+.... .........+.. +.+... .......
T Consensus 89 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~------~~~~~~-~~l~s~s 161 (340)
T 1got_B 89 KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSC------CRFLDD-NQIVTSS 161 (340)
T ss_dssp EEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEE------EEEEET-TEEEEEE
T ss_pred cceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEE------EEECCC-CcEEEEE
Confidence 44567789999999999999999999999999999999764321 111111111110 111110 1111111
Q ss_pred cCC--ceeeec-CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCE
Q 012367 290 IPD--EVFQIE-ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNY 364 (465)
Q Consensus 290 ~~~--~~~~~~-~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~ 364 (465)
... .+|++. ..++..+.+|.+.|.+++|+|++ ++++|+.|++|++||++++.++..+ .|...|++++|+| ++++
T Consensus 162 ~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p-~~~~ 240 (340)
T 1got_B 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNA 240 (340)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSE
T ss_pred CCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcC-CCCE
Confidence 111 233432 45667888999999999999975 8999999999999999999999888 5889999999999 9999
Q ss_pred EEEEeCCCcEEEEeCCCCeEEecccC---CCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCC
Q 012367 365 FISGSIDGKVRIWGVCEKRVVDWADV---RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN 441 (465)
Q Consensus 365 l~sgs~Dg~I~iwd~~~~~~~~~~~~---~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 441 (465)
|++|+.|++|++||+++++.+....+ ...|++++|+|+|++|++|+.||.|++||+.+.+.. ..+.. +..
T Consensus 241 l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~-~~~~~------h~~ 313 (340)
T 1got_B 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA-GVLAG------HDN 313 (340)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-EEEEC------CSS
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEe-eEeec------CCC
Confidence 99999999999999998876654333 347999999999999999999999999999876543 23322 346
Q ss_pred ceeeEEEeecCCc
Q 012367 442 KITGIQGRISKNY 454 (465)
Q Consensus 442 ~It~~~f~p~gs~ 454 (465)
.|+++.|+|+|.+
T Consensus 314 ~v~~~~~s~dg~~ 326 (340)
T 1got_B 314 RVSCLGVTDDGMA 326 (340)
T ss_dssp CEEEEEECTTSSC
T ss_pred cEEEEEEcCCCCE
Confidence 8999999998643
No 16
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.96 E-value=1.2e-26 Score=228.60 Aligned_cols=236 Identities=16% Similarity=0.331 Sum_probs=171.0
Q ss_pred cchhhhccCCCcEEEEEE-----CC-CCCEEEEEeCCCcEEEEecCCcee-------eeeeecCCCCcccccCCCeEEec
Q 012367 213 YTSQEIQAHKGCIWTLKF-----SP-DGRYLASGGEDGVVRIWHVTSVAA-------SCKSFTDDGGFGSNAKEGKIKFG 279 (465)
Q Consensus 213 ~~~~~l~~H~~~I~~l~f-----sp-dg~~LaSgs~Dg~V~iWd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 279 (465)
...++|.+|.+.|++++| ++ ++++||||+.|++|+|||+.+... ......+...+ ..+.+.
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V------~~~~~~ 85 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFV------SDLALS 85 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCE------EEEEEC
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCce------EEEEEC
Confidence 445778999999999999 77 899999999999999999975421 11111111111 111222
Q ss_pred cCCCCceeEecCC--ceeeec-CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe---cCCCce
Q 012367 280 KKKSSHVPVVIPD--EVFQIE-ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYV 352 (465)
Q Consensus 280 ~~~~~~~~~~~~~--~~~~~~-~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~---~h~~~V 352 (465)
......+...... .+|++. .+.+..+.+|...|.+++|+|++ +|++++.|++|++||+......... .|...|
T Consensus 86 ~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v 165 (343)
T 2xzm_R 86 QENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWV 165 (343)
T ss_dssp SSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCE
T ss_pred CCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCcee
Confidence 1111111111111 234442 45677889999999999999975 8999999999999999844333333 488899
Q ss_pred EEEEEccCCC----------CEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367 353 TCVQFNPIDD----------NYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG 422 (465)
Q Consensus 353 ~~i~fsp~~~----------~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~ 422 (465)
.+++|+| ++ .+|++++.|+.|++||........+.+|...|++++|+|+|++|++|+.||.|++||+..
T Consensus 166 ~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 166 SCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp EEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred eeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 9999999 55 799999999999999966555556888999999999999999999999999999999965
Q ss_pred CceeeeEeeecCcccccCCceeeEEEeecCCc------cceeeeec
Q 012367 423 NDLKLEKVDFHDRKKTSGNKITGIQGRISKNY------DNFRRFQT 462 (465)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~------d~~~~~~~ 462 (465)
.......+. ....|+.++|+|++.+ +++++|+.
T Consensus 245 ~~~~~~~~~-------~~~~v~~v~~sp~~~~la~~~d~~v~iw~~ 283 (343)
T 2xzm_R 245 LTYPQREFD-------AGSTINQIAFNPKLQWVAVGTDQGVKIFNL 283 (343)
T ss_dssp CSSCSEEEE-------CSSCEEEEEECSSSCEEEEEESSCEEEEES
T ss_pred Ccccceeec-------CCCcEEEEEECCCCCEEEEECCCCEEEEEe
Confidence 443332221 1246999999998643 35777764
No 17
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.95 E-value=1.9e-26 Score=225.48 Aligned_cols=234 Identities=15% Similarity=0.318 Sum_probs=175.2
Q ss_pred hhhccCCCcEEEEEECCC----CCEEEEEeCCCcEEEEecCCceeeeeee--cCCCCcccccCCCeEEeccCCCCceeEe
Q 012367 216 QEIQAHKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSF--TDDGGFGSNAKEGKIKFGKKKSSHVPVV 289 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspd----g~~LaSgs~Dg~V~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (465)
+.+++|.++|++++|+|+ +.+||||+.|++|+||++.......... .....+. .+.+...........
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~------~~~~~~~~~~l~s~s 99 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVV------SVDISHTLPIAASSS 99 (321)
T ss_dssp EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE------EEEECSSSSEEEEEE
T ss_pred eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEE------EEEECCCCCEEEEEe
Confidence 456799999999999985 5699999999999999997655432211 1111111 111111111111111
Q ss_pred cCC--ceeeec-CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCE
Q 012367 290 IPD--EVFQIE-ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNY 364 (465)
Q Consensus 290 ~~~--~~~~~~-~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~ 364 (465)
... .+|++. .+.+..+.+|...+.+++|+|++ +|++++.|++|++||+.+++....+ .|...|.+++|+| ++++
T Consensus 100 ~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~ 178 (321)
T 3ow8_A 100 LDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP-DGKY 178 (321)
T ss_dssp TTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECT-TSSE
T ss_pred CCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECC-CCCE
Confidence 111 233332 45667788899999999999985 8999999999999999999888777 4778999999999 9999
Q ss_pred EEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCce
Q 012367 365 FISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI 443 (465)
Q Consensus 365 l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~I 443 (465)
|++|+.|+.|++||+.+++.+. +.+|...|++++|+|++++|++|+.||.|++||+....... .+.. +...|
T Consensus 179 lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~------h~~~v 251 (321)
T 3ow8_A 179 LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG-TLSG------HASWV 251 (321)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEE-EECC------CSSCE
T ss_pred EEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeE-EEcC------CCCce
Confidence 9999999999999999988765 67899999999999999999999999999999998776532 2222 34679
Q ss_pred eeEEEeecCCc------c-ceeeeecC
Q 012367 444 TGIQGRISKNY------D-NFRRFQTP 463 (465)
Q Consensus 444 t~~~f~p~gs~------d-~~~~~~~p 463 (465)
++++|+|++.+ | ++++|++.
T Consensus 252 ~~~~~sp~~~~l~s~s~D~~v~iwd~~ 278 (321)
T 3ow8_A 252 LNVAFCPDDTHFVSSSSDKSVKVWDVG 278 (321)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCC
Confidence 99999998653 4 47788753
No 18
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.95 E-value=1.3e-26 Score=224.52 Aligned_cols=190 Identities=22% Similarity=0.348 Sum_probs=159.8
Q ss_pred cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (465)
Q Consensus 213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (465)
.....+.+|.+.|++++|+|++++|+||+.||+|++||+.+..
T Consensus 88 ~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~------------------------------------- 130 (304)
T 2ynn_A 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW------------------------------------- 130 (304)
T ss_dssp CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT-------------------------------------
T ss_pred cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc-------------------------------------
Confidence 3456778999999999999999999999999999999987531
Q ss_pred ceeeecCCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEe--cCCCceEEEEEccC-CCCEEEE
Q 012367 293 EVFQIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPI-DDNYFIS 367 (465)
Q Consensus 293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~--~h~~~V~~i~fsp~-~~~~l~s 367 (465)
.....+.+|...|.+++|+|. ..|++|+.|++|++||+.++.+...+ .|...|.++.|+|. ++.+|++
T Consensus 131 -------~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 203 (304)
T 2ynn_A 131 -------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203 (304)
T ss_dssp -------EEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEE
T ss_pred -------chhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEE
Confidence 123456789999999999984 48999999999999999888766665 36678999999873 5679999
Q ss_pred EeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeE
Q 012367 368 GSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 446 (465)
Q Consensus 368 gs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~ 446 (465)
|+.|++|++||+++++.+. +.+|...|.+++|+|++++|++|+.||+|++||+.+.++.. .+.. +...+..+
T Consensus 204 ~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~-~~~~------~~~~~~~~ 276 (304)
T 2ynn_A 204 ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK-TLNV------GLERSWCI 276 (304)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE-EECC------SSSSEEEE
T ss_pred EcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceee-eccC------CCccEEEE
Confidence 9999999999999987665 78899999999999999999999999999999999876532 3322 23578888
Q ss_pred EEeecCC
Q 012367 447 QGRISKN 453 (465)
Q Consensus 447 ~f~p~gs 453 (465)
.|+|++.
T Consensus 277 ~~~~~~~ 283 (304)
T 2ynn_A 277 ATHPTGR 283 (304)
T ss_dssp EECTTCG
T ss_pred EECCCCC
Confidence 8888754
No 19
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.95 E-value=2.8e-26 Score=227.28 Aligned_cols=186 Identities=23% Similarity=0.361 Sum_probs=160.3
Q ss_pred hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (465)
..+.+|.+.|.+++|+|++.+|+||+.||+|++||+.++
T Consensus 148 ~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~----------------------------------------- 186 (354)
T 2pbi_B 148 KSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG----------------------------------------- 186 (354)
T ss_dssp EEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-----------------------------------------
T ss_pred eeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-----------------------------------------
Confidence 456789999999999999999999999999999999864
Q ss_pred eecCCcceeeeccccceEEEEecCC---CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCC
Q 012367 296 QIEESPLQELHGHKGDVLDLAWSNS---NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID 371 (465)
Q Consensus 296 ~~~~~~~~~~~gh~~~V~~l~~s~~---~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~D 371 (465)
+++..+.+|...|.+++|+|+ .+|++|+.|++|++||+++++++..+ .|...|++++|+| ++++|++|+.|
T Consensus 187 ----~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D 261 (354)
T 2pbi_B 187 ----QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP-SGDAFASGSDD 261 (354)
T ss_dssp ----CEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETT
T ss_pred ----eEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeC-CCCEEEEEeCC
Confidence 345667799999999999873 48999999999999999999999988 5889999999999 99999999999
Q ss_pred CcEEEEeCCCCeEEeccc---CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEE
Q 012367 372 GKVRIWGVCEKRVVDWAD---VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQG 448 (465)
Q Consensus 372 g~I~iwd~~~~~~~~~~~---~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f 448 (465)
++|++||++++..+.... +...+++++|+|+|++|++|+.||+|++||+.++... ..+. .+...|+++.|
T Consensus 262 ~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~-~~l~------~h~~~v~~l~~ 334 (354)
T 2pbi_B 262 ATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRV-SILF------GHENRVSTLRV 334 (354)
T ss_dssp SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEE-EEEC------CCSSCEEEEEE
T ss_pred CeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceE-EEEE------CCCCcEEEEEE
Confidence 999999999887655332 3357899999999999999999999999999877543 2222 24478999999
Q ss_pred eecCCc
Q 012367 449 RISKNY 454 (465)
Q Consensus 449 ~p~gs~ 454 (465)
+|+|.+
T Consensus 335 spdg~~ 340 (354)
T 2pbi_B 335 SPDGTA 340 (354)
T ss_dssp CTTSSC
T ss_pred CCCCCE
Confidence 998754
No 20
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.4e-26 Score=225.42 Aligned_cols=199 Identities=21% Similarity=0.311 Sum_probs=154.7
Q ss_pred ccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (465)
Q Consensus 212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (465)
+.+.+++.+|.++|++++|+|+ +||||+.|++|++|++.....
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~----------------------------------- 46 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF----------------------------------- 46 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC-----------------------------------
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe-----------------------------------
Confidence 3455778899999999999988 999999999999999875311
Q ss_pred CceeeecCCcceee-e-ccccceEEEEecCCC-EEEEEeCCCeEEEEeCCC-------CeEeEEe-cCCCceEEEEEccC
Q 012367 292 DEVFQIEESPLQEL-H-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-------NQCLNVF-DHHNYVTCVQFNPI 360 (465)
Q Consensus 292 ~~~~~~~~~~~~~~-~-gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~-------~~~l~~~-~h~~~V~~i~fsp~ 360 (465)
.....+ . +|...|.+++|+|++ +|++|+.|++|+|||+.. ..++..+ .|...|++++|+|
T Consensus 47 --------~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp- 117 (330)
T 2hes_X 47 --------TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN- 117 (330)
T ss_dssp --------EEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECT-
T ss_pred --------EEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-
Confidence 112222 2 399999999999975 899999999999999853 3456666 5999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCC-C---eE-EecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceee-eEeeecC
Q 012367 361 DDNYFISGSIDGKVRIWGVCE-K---RV-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL-EKVDFHD 434 (465)
Q Consensus 361 ~~~~l~sgs~Dg~I~iwd~~~-~---~~-~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~-~~~~~~~ 434 (465)
++++|++|+.|++|+|||+.. + +. ..+.+|...|++++|+|++.+|++|+.||+|++||+..+.... ..+..
T Consensus 118 ~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~-- 195 (330)
T 2hes_X 118 DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNG-- 195 (330)
T ss_dssp TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECC--
T ss_pred CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccC--
Confidence 999999999999999999943 2 23 3477899999999999999999999999999999998764322 23322
Q ss_pred cccccCCceeeEEEeecC--------Ccc-ceeeeec
Q 012367 435 RKKTSGNKITGIQGRISK--------NYD-NFRRFQT 462 (465)
Q Consensus 435 ~~~~~~~~It~~~f~p~g--------s~d-~~~~~~~ 462 (465)
+...|.++.|+|++ +.| ++++|+.
T Consensus 196 ----h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~ 228 (330)
T 2hes_X 196 ----HEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY 228 (330)
T ss_dssp ----CSSCEEEEEECCSSSSCEEEEEETTSCEEEEEE
T ss_pred ----CCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEe
Confidence 34678999998872 234 4677763
No 21
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.95 E-value=6.1e-26 Score=221.18 Aligned_cols=248 Identities=18% Similarity=0.302 Sum_probs=172.0
Q ss_pred cchhhhccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEecCCceee----------------eeeecCCCC-cccccCCC
Q 012367 213 YTSQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAAS----------------CKSFTDDGG-FGSNAKEG 274 (465)
Q Consensus 213 ~~~~~l~~H~~~I~~l~fspd-g~~LaSgs~Dg~V~iWd~~~~~~~----------------~~~~~~~~~-~~~~~~~~ 274 (465)
.+..+|+||++.|++|+|+|+ +++|||||.||+|+|||+.+.... ...+.+... +.....++
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~ 108 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence 445678999999999999997 689999999999999998764321 111111111 11111112
Q ss_pred eEEeccCCC-----------------------CceeEe-cCCc--eeeecC--CcceeeeccccceEEEEecCC---CEE
Q 012367 275 KIKFGKKKS-----------------------SHVPVV-IPDE--VFQIEE--SPLQELHGHKGDVLDLAWSNS---NYL 323 (465)
Q Consensus 275 ~~~~~~~~~-----------------------~~~~~~-~~~~--~~~~~~--~~~~~~~gh~~~V~~l~~s~~---~~l 323 (465)
.+..+.... ...... .... +|+... .......+|...|..++|+++ .++
T Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 188 (340)
T 4aow_A 109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII 188 (340)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEE
T ss_pred cceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEE
Confidence 111111100 000000 0111 122211 122345678999999999875 378
Q ss_pred EEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeC
Q 012367 324 LSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPD 402 (465)
Q Consensus 324 ~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spd 402 (465)
++++.|++|++||+.+++++..+ .|...|++++|+| ++++|++|+.|+.|++||+++.+.+....+...|.+++|+|+
T Consensus 189 ~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~ 267 (340)
T 4aow_A 189 VSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPN 267 (340)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSS
T ss_pred EEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCC
Confidence 99999999999999999998888 5899999999999 999999999999999999999998887777889999999998
Q ss_pred CCEEEEEEcCCcEEEEEecCCceeeeEe--eecCcccccCCceeeEEEeecCCc------c-ceeeeec
Q 012367 403 GKGFIVGSITGTCHFYKASGNDLKLEKV--DFHDRKKTSGNKITGIQGRISKNY------D-NFRRFQT 462 (465)
Q Consensus 403 g~~l~sgs~dG~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~It~~~f~p~gs~------d-~~~~~~~ 462 (465)
+. +++++.||.|++||+.+........ ........+...|+++.|+|+|.+ | .+++|++
T Consensus 268 ~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~ 335 (340)
T 4aow_A 268 RY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335 (340)
T ss_dssp SS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred Cc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 85 4566679999999998876533211 111112335678999999998654 4 3788874
No 22
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.95 E-value=5.5e-26 Score=220.75 Aligned_cols=167 Identities=17% Similarity=0.335 Sum_probs=142.9
Q ss_pred hhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (465)
Q Consensus 215 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (465)
.+.+.+|.+.|++|+|+|++++||+|+.||+|+|||+.+....
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~------------------------------------- 46 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSN------------------------------------- 46 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCC-------------------------------------
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCc-------------------------------------
Confidence 3556799999999999999999999999999999999863211
Q ss_pred eeecCCcceeeeccccceEEEEecC---CCEEEEEeCCCeEEEEeCCCC---------eEeEEe-cCCCceEEEEEccCC
Q 012367 295 FQIEESPLQELHGHKGDVLDLAWSN---SNYLLSCSMDKTVRMWQVGCN---------QCLNVF-DHHNYVTCVQFNPID 361 (465)
Q Consensus 295 ~~~~~~~~~~~~gh~~~V~~l~~s~---~~~l~s~s~DgtV~lWD~~~~---------~~l~~~-~h~~~V~~i~fsp~~ 361 (465)
......+.+|...|.+++|+| +.+|++++.|++|++||+.++ +++..+ .|...|.+++|+| +
T Consensus 47 ----~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 121 (351)
T 3f3f_A 47 ----WELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP-A 121 (351)
T ss_dssp ----EEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECC-G
T ss_pred ----ceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcC-C
Confidence 023556778999999999998 459999999999999999886 556666 5889999999999 7
Q ss_pred --CCEEEEEeCCCcEEEEeCCCCe--------------------------------------------------------
Q 012367 362 --DNYFISGSIDGKVRIWGVCEKR-------------------------------------------------------- 383 (465)
Q Consensus 362 --~~~l~sgs~Dg~I~iwd~~~~~-------------------------------------------------------- 383 (465)
+++|++++.|+.|++||+++++
T Consensus 122 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~ 201 (351)
T 3f3f_A 122 HLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD 201 (351)
T ss_dssp GGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTT
T ss_pred CCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCC
Confidence 9999999999999999986532
Q ss_pred -----EEecccCCCCeEEEEEeeCC----CEEEEEEcCCcEEEEEecCC
Q 012367 384 -----VVDWADVRDVISAICYIPDG----KGFIVGSITGTCHFYKASGN 423 (465)
Q Consensus 384 -----~~~~~~~~~~V~sv~~spdg----~~l~sgs~dG~v~iwd~~~~ 423 (465)
...+.+|...|++++|+|++ ++|++|+.||.|++||+...
T Consensus 202 ~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 202 GKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK 250 (351)
T ss_dssp SCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred CceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence 22345688899999999998 89999999999999999865
No 23
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.95 E-value=4.6e-26 Score=226.05 Aligned_cols=202 Identities=14% Similarity=0.152 Sum_probs=155.2
Q ss_pred hccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeE-ecCCc--e
Q 012367 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV-VIPDE--V 294 (465)
Q Consensus 218 l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~ 294 (465)
..+|.+.|++|+|+|+|++|++|+.||+|+|||+.++............+. .+.+.......... ..... +
T Consensus 135 ~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~------~v~~s~~~~~~~~s~~~dg~v~~ 208 (357)
T 4g56_B 135 KYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVN------CVAACPGKDTIFLSCGEDGRILL 208 (357)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE------EEEECTTCSSCEEEEETTSCEEE
T ss_pred cCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEE------EEEEccCCCceeeeeccCCceEE
Confidence 458999999999999999999999999999999998877655543322221 11222121111111 11111 2
Q ss_pred eeec-CCccee--eeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEE
Q 012367 295 FQIE-ESPLQE--LHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISG 368 (465)
Q Consensus 295 ~~~~-~~~~~~--~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sg 368 (465)
|++. .++... +..|...|.+++|+|+ .+|++|+.|++|++||+++++++..+ .|...|++++|+|.++++|++|
T Consensus 209 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg 288 (357)
T 4g56_B 209 WDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASI 288 (357)
T ss_dssp CCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEE
T ss_pred EECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEE
Confidence 3322 233332 3457788999999986 38899999999999999999999888 4888999999999445789999
Q ss_pred eCCCcEEEEeCCCCeEEecccCCCCeEEEEEee-CCCEEEEEEcCCcEEEEEecCCce
Q 012367 369 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 369 s~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~sp-dg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
+.|++|+|||+.+++++...+|...|++++|+| ++++|++|+.||+|++|++.....
T Consensus 289 s~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 289 SEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp ETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred eCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 999999999999999999889999999999999 899999999999999999976543
No 24
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.95 E-value=4.2e-27 Score=229.37 Aligned_cols=189 Identities=21% Similarity=0.300 Sum_probs=148.5
Q ss_pred hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (465)
..+.+|.++|++++|+|+|++||||+.|++|+|||+.++..
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~--------------------------------------- 47 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ--------------------------------------- 47 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE---------------------------------------
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc---------------------------------------
Confidence 45679999999999999999999999999999999875321
Q ss_pred eecCCcceeeeccccceEEEEecC---CCEEEEEeCCCeEEEEeCCCCe--EeEEe-cCCCceEEEEEccCC--CCEEEE
Q 012367 296 QIEESPLQELHGHKGDVLDLAWSN---SNYLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPID--DNYFIS 367 (465)
Q Consensus 296 ~~~~~~~~~~~gh~~~V~~l~~s~---~~~l~s~s~DgtV~lWD~~~~~--~l~~~-~h~~~V~~i~fsp~~--~~~l~s 367 (465)
..+..+.+|.+.|.+++|++ +.+|++|+.|++|++||+.++. ++..+ .|...|++++|+| + +.+|++
T Consensus 48 ----~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p-~~~g~~las 122 (316)
T 3bg1_A 48 ----ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAP-HDYGLILAC 122 (316)
T ss_dssp ----EEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECC-TTTCSCEEE
T ss_pred ----EEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECC-CCCCcEEEE
Confidence 12456789999999999975 3589999999999999999874 45555 5889999999999 5 789999
Q ss_pred EeCCCcEEEEeCCCCe-E---EecccCCCCeEEEEEeeC-----------------CCEEEEEEcCCcEEEEEecCCcee
Q 012367 368 GSIDGKVRIWGVCEKR-V---VDWADVRDVISAICYIPD-----------------GKGFIVGSITGTCHFYKASGNDLK 426 (465)
Q Consensus 368 gs~Dg~I~iwd~~~~~-~---~~~~~~~~~V~sv~~spd-----------------g~~l~sgs~dG~v~iwd~~~~~~~ 426 (465)
|+.|++|++||+..+. . ....+|...|.+++|+|+ +++|++|+.||+|++||+......
T Consensus 123 gs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~ 202 (316)
T 3bg1_A 123 GSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW 202 (316)
T ss_dssp ECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE
T ss_pred EcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc
Confidence 9999999999998753 1 235678899999999998 478999999999999999754211
Q ss_pred eeEeeecCcccccCCceeeEEEeecC
Q 012367 427 LEKVDFHDRKKTSGNKITGIQGRISK 452 (465)
Q Consensus 427 ~~~~~~~~~~~~~~~~It~~~f~p~g 452 (465)
.....+ ..+...|.++.|+|++
T Consensus 203 ~~~~~l----~~h~~~V~~v~~sp~~ 224 (316)
T 3bg1_A 203 KEEQKL----EAHSDWVRDVAWAPSI 224 (316)
T ss_dssp EEEECC----BCCSSCEEEEECCCCS
T ss_pred ceeeec----ccCCCceEEEEecCCC
Confidence 111112 2245789999999875
No 25
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.95 E-value=6.9e-26 Score=218.65 Aligned_cols=205 Identities=20% Similarity=0.296 Sum_probs=160.9
Q ss_pred chhhhccCCCcEEEEEECCC--CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367 214 TSQEIQAHKGCIWTLKFSPD--GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (465)
Q Consensus 214 ~~~~l~~H~~~I~~l~fspd--g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (465)
..+++.+|.++|++++|+|+ |++||||+.||+|+|||+.++..
T Consensus 45 ~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~----------------------------------- 89 (297)
T 2pm7_B 45 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRW----------------------------------- 89 (297)
T ss_dssp CCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCB-----------------------------------
T ss_pred EEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCce-----------------------------------
Confidence 34678899999999999874 89999999999999999875321
Q ss_pred CceeeecCCcceeeeccccceEEEEecCC---CEEEEEeCCCeEEEEeCCCCeE--eEEe-cCCCceEEEEEccC-----
Q 012367 292 DEVFQIEESPLQELHGHKGDVLDLAWSNS---NYLLSCSMDKTVRMWQVGCNQC--LNVF-DHHNYVTCVQFNPI----- 360 (465)
Q Consensus 292 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~---~~l~s~s~DgtV~lWD~~~~~~--l~~~-~h~~~V~~i~fsp~----- 360 (465)
..+..+.+|...|.+++|+|+ .+|++++.|++|++||++++.. ...+ .|...|.+++|+|.
T Consensus 90 --------~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 90 --------SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp --------CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred --------EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 234456689999999999985 4899999999999999987632 2333 68899999999993
Q ss_pred -------CCCEEEEEeCCCcEEEEeCCCCe----E-EecccCCCCeEEEEEeeCC---CEEEEEEcCCcEEEEEecCCce
Q 012367 361 -------DDNYFISGSIDGKVRIWGVCEKR----V-VDWADVRDVISAICYIPDG---KGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 361 -------~~~~l~sgs~Dg~I~iwd~~~~~----~-~~~~~~~~~V~sv~~spdg---~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
++++|++|+.|++|+|||++++. . ..+.+|...|.+++|+|++ .+|++|+.||+|++||+.....
T Consensus 162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~ 241 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG 241 (297)
T ss_dssp --------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC
Confidence 15799999999999999997654 3 3477899999999999985 8999999999999999987542
Q ss_pred eeeEeeecCcccccCCceeeEEEeecCCc------c-ceeeeecC
Q 012367 426 KLEKVDFHDRKKTSGNKITGIQGRISKNY------D-NFRRFQTP 463 (465)
Q Consensus 426 ~~~~~~~~~~~~~~~~~It~~~f~p~gs~------d-~~~~~~~p 463 (465)
+.....+. ...+...|.++.|+|++.+ | .+++|...
T Consensus 242 ~~~~~~~~--~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 242 PWKKTLLK--EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CCEEEESS--SSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ccceeeee--cccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 22111111 1123467999999998654 3 37888754
No 26
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.8e-26 Score=222.64 Aligned_cols=201 Identities=25% Similarity=0.429 Sum_probs=151.6
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (465)
+|.+.|++++|+|++++||+|+.|++|+||++....... ...
T Consensus 56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~--------------------------------------~~~ 97 (330)
T 2hes_X 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRT--------------------------------------FEM 97 (330)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC---------------------------------------------CCC
T ss_pred CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCcc--------------------------------------ccc
Confidence 499999999999999999999999999999986421000 001
Q ss_pred CcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCC----CeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCc
Q 012367 300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC----NQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGK 373 (465)
Q Consensus 300 ~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~----~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~ 373 (465)
.++..+.+|...|.+++|+|++ +|++|+.|++|++||+.. .+++..+ .|...|++++|+| ++++|++|+.|++
T Consensus 98 ~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~ 176 (330)
T 2hes_X 98 DLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDT 176 (330)
T ss_dssp EEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSC
T ss_pred eeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCe
Confidence 2456678999999999999975 899999999999999943 2566666 5889999999999 9999999999999
Q ss_pred EEEEeCCCC--e-EEecccCCCCeEEEEEeeC--CCEEEEEEcCCcEEEEEecCCce----eee-EeeecCcccccCCce
Q 012367 374 VRIWGVCEK--R-VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDL----KLE-KVDFHDRKKTSGNKI 443 (465)
Q Consensus 374 I~iwd~~~~--~-~~~~~~~~~~V~sv~~spd--g~~l~sgs~dG~v~iwd~~~~~~----~~~-~~~~~~~~~~~~~~I 443 (465)
|++||..++ + +..+.+|...|.+++|+|+ +..|++|+.||+|++||+.+... ... ...+. ..+...|
T Consensus 177 i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~---~~h~~~v 253 (330)
T 2hes_X 177 VRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILP---DVHKRQV 253 (330)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECC---SCCSSCE
T ss_pred EEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecc---cccccce
Confidence 999998765 2 3457889999999999998 77899999999999999975421 001 11111 1144679
Q ss_pred eeEEEeecC-----Ccc-ceeeeec
Q 012367 444 TGIQGRISK-----NYD-NFRRFQT 462 (465)
Q Consensus 444 t~~~f~p~g-----s~d-~~~~~~~ 462 (465)
.++.|++++ +.| .+++|+.
T Consensus 254 ~~v~~s~~~~l~s~~~dg~v~iw~~ 278 (330)
T 2hes_X 254 YNVAWGFNGLIASVGADGVLAVYEE 278 (330)
T ss_dssp EEEEECTTSCEEEEETTSCEEEEEE
T ss_pred EEEEEcCCCEEEEEeCCCEEEEEEc
Confidence 999887653 234 4677763
No 27
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.95 E-value=9.8e-26 Score=239.62 Aligned_cols=242 Identities=16% Similarity=0.232 Sum_probs=171.7
Q ss_pred hhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee------------ecCCCCcccccCCCeEEeccCC
Q 012367 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKS------------FTDDGGFGSNAKEGKIKFGKKK 282 (465)
Q Consensus 215 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 282 (465)
.+.+.+|.+.|++++|+|+|++|+||+.|++|++||+.++...... +..............+.++...
T Consensus 317 ~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~ 396 (611)
T 1nr0_A 317 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAG 396 (611)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSS
T ss_pred ceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecC
Confidence 4567899999999999999999999999999999999876543221 1111111111122222222111
Q ss_pred CC----------------ceeEecCCc----------eeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEE
Q 012367 283 SS----------------HVPVVIPDE----------VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMW 335 (465)
Q Consensus 283 ~~----------------~~~~~~~~~----------~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lW 335 (465)
.. ......++. +..+....+..+ .|...+.+++|+|++ +|++|+.|++|++|
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~-~~~~~v~~va~spdg~~lasgs~D~~v~lw 475 (611)
T 1nr0_A 397 GSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV-PISYNSSCVALSNDKQFVAVGGQDSKVHVY 475 (611)
T ss_dssp SSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE-ECSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred CccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee-ecCCCceEEEEeCCCCEEEEeCCCCeEEEE
Confidence 00 000011111 101111113333 377889999999986 89999999999999
Q ss_pred eCCCCeE--eEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCC-CeEEe---cccCCCCeEEEEEeeCCCEEEEE
Q 012367 336 QVGCNQC--LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVVD---WADVRDVISAICYIPDGKGFIVG 409 (465)
Q Consensus 336 D~~~~~~--l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~-~~~~~---~~~~~~~V~sv~~spdg~~l~sg 409 (465)
|+.++.. +....|...|++++|+| ++++|++++.|++|++||+.+ +++.. +..|...|++++|+|||++|++|
T Consensus 476 d~~~~~~~~~~~~~h~~~v~~v~fsp-dg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasg 554 (611)
T 1nr0_A 476 KLSGASVSEVKTIVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG 554 (611)
T ss_dssp EEETTEEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEE
T ss_pred EccCCceeeeeccCCCCceEEEEECC-CCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEE
Confidence 9987653 34457999999999999 999999999999999999987 65543 23499999999999999999999
Q ss_pred EcCCcEEEEEecCCceee-eEeeecCccccc-CCceeeEEEeecCC-----cc-ceeeeecCC
Q 012367 410 SITGTCHFYKASGNDLKL-EKVDFHDRKKTS-GNKITGIQGRISKN-----YD-NFRRFQTPY 464 (465)
Q Consensus 410 s~dG~v~iwd~~~~~~~~-~~~~~~~~~~~~-~~~It~~~f~p~gs-----~d-~~~~~~~p~ 464 (465)
+.||+|++|++.++.... .... .+ ...|+++.|+|++. .| ++++|+.||
T Consensus 555 s~D~~v~lW~~~~~~~~~~~~~~------~h~~~~v~~v~fs~d~~l~s~~~D~~i~lW~~~~ 611 (611)
T 1nr0_A 555 SLDNSVIVWNMNKPSDHPIIIKG------AHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVPF 611 (611)
T ss_dssp ETTSCEEEEETTCTTSCCEEETT------SSTTSCEEEEEEEETTEEEEEETTSCEEEEECCC
T ss_pred ECCCcEEEEECCCcccccchhhc------cCcccCeeEEEEcCCCEEEEecCCCCEEEEeccC
Confidence 999999999998765322 2211 23 46899999999753 33 589999987
No 28
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.95 E-value=1.1e-26 Score=236.44 Aligned_cols=200 Identities=13% Similarity=0.153 Sum_probs=161.0
Q ss_pred hhhhccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367 215 SQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (465)
Q Consensus 215 ~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (465)
.+...+|...|+||+|+| ++++||+|+.||+|+|||+.+...
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~------------------------------------- 154 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK------------------------------------- 154 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC-------------------------------------
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc-------------------------------------
Confidence 345568999999999999 567999999999999999976422
Q ss_pred eeeecCCcceeeeccccceEEEEecC-C-CEEEEEeCCCeEEEEeCCCCeEeEEec---CCCceEEEEEccCCCCEEEEE
Q 012367 294 VFQIEESPLQELHGHKGDVLDLAWSN-S-NYLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISG 368 (465)
Q Consensus 294 ~~~~~~~~~~~~~gh~~~V~~l~~s~-~-~~l~s~s~DgtV~lWD~~~~~~l~~~~---h~~~V~~i~fsp~~~~~l~sg 368 (465)
.....+.+|.+.|++|+|+| + ++|+||+.|++|++||++++....... +...+.+++|+| ++.+|++|
T Consensus 155 ------~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g 227 (435)
T 4e54_B 155 ------PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSA-SSRMVVTG 227 (435)
T ss_dssp ------CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEET-TTTEEEEE
T ss_pred ------eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECC-CCCEEEEE
Confidence 12334568999999999997 3 499999999999999998765544443 344688999999 99999999
Q ss_pred eCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCC-EEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEE
Q 012367 369 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 447 (465)
Q Consensus 369 s~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~-~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~ 447 (465)
+.||.|++||+++..+..+.+|...|++++|+|++. +|++|+.||.|++||++..+....... ...+...|+++.
T Consensus 228 ~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~----~~~h~~~v~~~~ 303 (435)
T 4e54_B 228 DNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLY----SLPHRHPVNAAC 303 (435)
T ss_dssp CSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSB----CCBCSSCEEECC
T ss_pred eCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEE----eeecccccccee
Confidence 999999999998887777889999999999999986 688999999999999987654322111 122457899999
Q ss_pred EeecCCc------c-ceeeeec
Q 012367 448 GRISKNY------D-NFRRFQT 462 (465)
Q Consensus 448 f~p~gs~------d-~~~~~~~ 462 (465)
|+|+|.+ | .+++|+.
T Consensus 304 ~spdg~~l~s~~~D~~i~iwd~ 325 (435)
T 4e54_B 304 FSPDGARLLTTDQKSEIRVYSA 325 (435)
T ss_dssp BCTTSSEEEEEESSSCEEEEES
T ss_pred ECCCCCeeEEEcCCCEEEEEEC
Confidence 9998654 3 3777765
No 29
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.95 E-value=4e-26 Score=225.49 Aligned_cols=171 Identities=15% Similarity=0.160 Sum_probs=141.5
Q ss_pred ccchhhhccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec
Q 012367 212 LYTSQEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 290 (465)
Q Consensus 212 ~~~~~~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (465)
..+.+.+.+|.+.|++++|+|++. +|+||+.||+|+|||+.+++.....
T Consensus 159 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~------------------------------ 208 (344)
T 4gqb_B 159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI------------------------------ 208 (344)
T ss_dssp TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC------------------------------
T ss_pred CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeee------------------------------
Confidence 345577889999999999999985 8999999999999999875332110
Q ss_pred CCceeeecCCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCC-CEEE
Q 012367 291 PDEVFQIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDD-NYFI 366 (465)
Q Consensus 291 ~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~-~~l~ 366 (465)
....|...+.+++|+|+ .+|++|+.|++|++||+++++++..+ .|...|++++|+| ++ ++|+
T Consensus 209 -------------~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp-~g~~~la 274 (344)
T 4gqb_B 209 -------------GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSP-HSVPFLA 274 (344)
T ss_dssp -------------C----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECS-SSSCCEE
T ss_pred -------------ecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEcc-CCCeEEE
Confidence 11245667899999985 38899999999999999999999988 5899999999999 65 7899
Q ss_pred EEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCC-EEEEEEcCCcEEEEEecCCcee
Q 012367 367 SGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLK 426 (465)
Q Consensus 367 sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~-~l~sgs~dG~v~iwd~~~~~~~ 426 (465)
+|+.|++|+|||+.++++..+.+|.+.|++++|+|+++ +|++|+.||+|++|++.+..++
T Consensus 275 sgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~~ 335 (344)
T 4gqb_B 275 SLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLP 335 (344)
T ss_dssp EEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC----
T ss_pred EEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCCC
Confidence 99999999999999999999999999999999999986 5678999999999999876543
No 30
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.95 E-value=5e-26 Score=224.48 Aligned_cols=200 Identities=24% Similarity=0.371 Sum_probs=159.2
Q ss_pred hccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeee
Q 012367 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 297 (465)
Q Consensus 218 l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (465)
..+|.+.|++++|+|+|++||+|+.|++|+||++.....
T Consensus 57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~----------------------------------------- 95 (345)
T 3fm0_A 57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF----------------------------------------- 95 (345)
T ss_dssp CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-E-----------------------------------------
T ss_pred ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCe-----------------------------------------
Confidence 368999999999999999999999999999999875321
Q ss_pred cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCe---EeEEe-cCCCceEEEEEccCCCCEEEEEeCCC
Q 012367 298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ---CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG 372 (465)
Q Consensus 298 ~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~---~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg 372 (465)
..+..+.+|...|.+++|+|++ +|++|+.|++|++||+.++. ++..+ .|...|.+++|+| ++++|++|+.|+
T Consensus 96 --~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~ 172 (345)
T 3fm0_A 96 --ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDD 172 (345)
T ss_dssp --EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEEEEETTS
T ss_pred --EEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCC
Confidence 2345677999999999999975 99999999999999998763 45555 5889999999999 999999999999
Q ss_pred cEEEEeCCCCeE---EecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee--------Ee-eecCcccccC
Q 012367 373 KVRIWGVCEKRV---VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE--------KV-DFHDRKKTSG 440 (465)
Q Consensus 373 ~I~iwd~~~~~~---~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~--------~~-~~~~~~~~~~ 440 (465)
+|++||+.++.. ..+.+|...|++++|+|+|++|++|+.||+|++|+......... .. ........+.
T Consensus 173 ~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 252 (345)
T 3fm0_A 173 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHS 252 (345)
T ss_dssp CEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCS
T ss_pred cEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCC
Confidence 999999988753 35788999999999999999999999999999999743221100 00 0000001144
Q ss_pred CceeeEEEeecCCc-------cceeeee
Q 012367 441 NKITGIQGRISKNY-------DNFRRFQ 461 (465)
Q Consensus 441 ~~It~~~f~p~gs~-------d~~~~~~ 461 (465)
..|.++.|+|++.+ ..+++|+
T Consensus 253 ~~v~~v~~~~~~~~l~s~~~d~~i~vw~ 280 (345)
T 3fm0_A 253 RTIYDIAWCQLTGALATACGDDAIRVFQ 280 (345)
T ss_dssp SCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred CcEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence 67999999887543 3467775
No 31
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.94 E-value=3.7e-25 Score=222.21 Aligned_cols=242 Identities=22% Similarity=0.372 Sum_probs=172.6
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcc------------cccCCCeEEeccCCCCcee
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFG------------SNAKEGKIKFGKKKSSHVP 287 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 287 (465)
+|.+.|++++|+|+|++||+|+ |++++||++.++.............. .......+.+...+...+.
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999987 78999999988766544322211000 0000112222222222222
Q ss_pred EecCCc--eeeec-CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCC
Q 012367 288 VVIPDE--VFQIE-ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDN 363 (465)
Q Consensus 288 ~~~~~~--~~~~~-~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~ 363 (465)
...... +|++. .+.+..+.+|...|.+++|+|++ +|++++.|++|++||++++++...+.+...|.+++|+|.+++
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~ 220 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK 220 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCC
T ss_pred EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCC
Confidence 222222 34443 34567788999999999999975 899999999999999999999999999999999999998899
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEe-c-------ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeE-e----
Q 012367 364 YFISGSIDGKVRIWGVCEKRVVD-W-------ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK-V---- 430 (465)
Q Consensus 364 ~l~sgs~Dg~I~iwd~~~~~~~~-~-------~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~-~---- 430 (465)
+|++|+.|+.|++||+.++..+. + .+|...|++++|+|+|++|++|+.||+|++||+......... .
T Consensus 221 ~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~ 300 (393)
T 1erj_A 221 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 300 (393)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------
T ss_pred EEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCC
Confidence 99999999999999999887654 2 468899999999999999999999999999999864332110 0
Q ss_pred eecCcccccCCceeeEEEeecCCc------cc-eeeeec
Q 012367 431 DFHDRKKTSGNKITGIQGRISKNY------DN-FRRFQT 462 (465)
Q Consensus 431 ~~~~~~~~~~~~It~~~f~p~gs~------d~-~~~~~~ 462 (465)
........+...|.++.|+|++.+ |+ +++|+.
T Consensus 301 ~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~ 339 (393)
T 1erj_A 301 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 339 (393)
T ss_dssp CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred cceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 000011124467899999887643 43 677764
No 32
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.94 E-value=3.4e-26 Score=228.78 Aligned_cols=255 Identities=19% Similarity=0.354 Sum_probs=176.5
Q ss_pred CcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeee-------eeecCC
Q 012367 192 PKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASC-------KSFTDD 264 (465)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~-------~~~~~~ 264 (465)
.....+++|.. ......+.+.+|...|.+++|+|+|++||+|+.|+.|+||++.+..... ....+.
T Consensus 85 s~D~~v~iWd~-------~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~ 157 (380)
T 3iz6_a 85 SQDGRLIVWNA-------LTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHK 157 (380)
T ss_dssp ETTSEEEEEET-------TTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCS
T ss_pred eCCCeEEEEEC-------CCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCC
Confidence 34455665542 2233456778999999999999999999999999999999987532110 000011
Q ss_pred CCcccccCCCeEEeccCCCCceeEecCC---ceeeec-CCcceee-----eccccceEEEEecC-C-CEEEEEeCCCeEE
Q 012367 265 GGFGSNAKEGKIKFGKKKSSHVPVVIPD---EVFQIE-ESPLQEL-----HGHKGDVLDLAWSN-S-NYLLSCSMDKTVR 333 (465)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~-----~gh~~~V~~l~~s~-~-~~l~s~s~DgtV~ 333 (465)
..+.. +.+.............+ .+|++. ...+..+ .+|...|.+++|++ + ++|++|+.|++|+
T Consensus 158 ~~v~~------~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~ 231 (380)
T 3iz6_a 158 GYASS------CQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVR 231 (380)
T ss_dssp SCCCC------CBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEE
T ss_pred cceEE------EEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEE
Confidence 10100 01111111111111111 123322 2233333 57999999999986 3 5999999999999
Q ss_pred EEeCC-CCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEec-ccC-------CCCeEEEEEeeCC
Q 012367 334 MWQVG-CNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW-ADV-------RDVISAICYIPDG 403 (465)
Q Consensus 334 lWD~~-~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~-~~~-------~~~V~sv~~spdg 403 (465)
+||++ .+.++..+ .|...|++++|+| ++++|++|+.|++|++||++++..+.. ..+ ...|++++|+|+|
T Consensus 232 ~wd~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 310 (380)
T 3iz6_a 232 LWDLRITSRAVRTYHGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISG 310 (380)
T ss_dssp EEETTTTCCCCEEECCCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSS
T ss_pred EEECCCCCcceEEECCcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCC
Confidence 99998 45677777 5999999999999 999999999999999999999876652 222 2358999999999
Q ss_pred CEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCC------ccc-eeeeecC
Q 012367 404 KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKN------YDN-FRRFQTP 463 (465)
Q Consensus 404 ~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs------~d~-~~~~~~p 463 (465)
++|++|+.||.|++||+..++..... ......+...|+++.|+|+|. .|+ +++|+..
T Consensus 311 ~~l~~g~~dg~i~vwd~~~~~~~~~~---~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 311 RLLFAGYSNGDCYVWDTLLAEMVLNL---GTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp SEEEEECTTSCEEEEETTTCCEEEEE---CCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred CEEEEEECCCCEEEEECCCCceEEEE---ecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 99999999999999999877654322 111223567899999999854 454 6777753
No 33
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.3e-25 Score=220.05 Aligned_cols=201 Identities=20% Similarity=0.344 Sum_probs=164.8
Q ss_pred chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (465)
Q Consensus 214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (465)
+.+.+.+|.++|++++|+|++++||+|+.||.|+||++.....
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~------------------------------------- 45 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH------------------------------------- 45 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-------------------------------------
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-------------------------------------
Confidence 3467889999999999999999999999999999999874211
Q ss_pred eeeecCCcceeeeccccceEEEEecCC---CEEEEEeCCCeEEEEeCCCCe--EeEEe-cCCCceEEEEEccCC--CCEE
Q 012367 294 VFQIEESPLQELHGHKGDVLDLAWSNS---NYLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPID--DNYF 365 (465)
Q Consensus 294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~---~~l~s~s~DgtV~lWD~~~~~--~l~~~-~h~~~V~~i~fsp~~--~~~l 365 (465)
..+..+.+|...|.+++|+++ .+|++++.|++|++||+.+++ .+..+ .|...|.+++|+| + +++|
T Consensus 46 ------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l 118 (379)
T 3jrp_A 46 ------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLL 118 (379)
T ss_dssp ------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEE
T ss_pred ------eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCC-CCCCCEE
Confidence 235567789999999999864 599999999999999999987 55555 4889999999999 7 8999
Q ss_pred EEEeCCCcEEEEeCCCC---eEEecccCCCCeEEEEEee-------------CCCEEEEEEcCCcEEEEEecCCceeee-
Q 012367 366 ISGSIDGKVRIWGVCEK---RVVDWADVRDVISAICYIP-------------DGKGFIVGSITGTCHFYKASGNDLKLE- 428 (465)
Q Consensus 366 ~sgs~Dg~I~iwd~~~~---~~~~~~~~~~~V~sv~~sp-------------dg~~l~sgs~dG~v~iwd~~~~~~~~~- 428 (465)
++++.|+.|++||+.+. .......|...|++++|+| ++..|++|+.||.|++||+.++.....
T Consensus 119 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 198 (379)
T 3jrp_A 119 LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL 198 (379)
T ss_dssp EEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEE
T ss_pred EEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceee
Confidence 99999999999999876 3445678999999999999 699999999999999999987654332
Q ss_pred EeeecCcccccCCceeeEEEeec---CCc------c-ceeeeec
Q 012367 429 KVDFHDRKKTSGNKITGIQGRIS---KNY------D-NFRRFQT 462 (465)
Q Consensus 429 ~~~~~~~~~~~~~~It~~~f~p~---gs~------d-~~~~~~~ 462 (465)
...+. .+...|+++.|+|+ +.+ | .+++|+.
T Consensus 199 ~~~~~----~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~ 238 (379)
T 3jrp_A 199 ESTLE----GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 238 (379)
T ss_dssp EEEEC----CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred EEEEe----cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence 22222 24478999999998 433 3 3677764
No 34
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.94 E-value=3.3e-26 Score=227.20 Aligned_cols=204 Identities=9% Similarity=0.089 Sum_probs=158.1
Q ss_pred cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (465)
Q Consensus 213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (465)
...+.+.+|.+.|++++|+|++++||+|+.||+|+|||+.+...
T Consensus 46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~------------------------------------ 89 (377)
T 3dwl_C 46 KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT------------------------------------ 89 (377)
T ss_dssp EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C------------------------------------
T ss_pred EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc------------------------------------
Confidence 45577889999999999999999999999999999999986430
Q ss_pred ceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCe---EeEEe-c-CCCceEEEEEccCCCCEEE
Q 012367 293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ---CLNVF-D-HHNYVTCVQFNPIDDNYFI 366 (465)
Q Consensus 293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~---~l~~~-~-h~~~V~~i~fsp~~~~~l~ 366 (465)
..+...+.+|...|.+++|+|++ +|++++.|++|++||+.+++ +...+ . |...|++++|+| ++++|+
T Consensus 90 ------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~ 162 (377)
T 3dwl_C 90 ------WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-NNVLLA 162 (377)
T ss_dssp ------CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT-TSSEEE
T ss_pred ------eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC-CCCEEE
Confidence 12345566899999999999975 89999999999999999887 36666 3 899999999999 999999
Q ss_pred EEeCCCcEEEEeCC------------------CCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367 367 SGSIDGKVRIWGVC------------------EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 428 (465)
Q Consensus 367 sgs~Dg~I~iwd~~------------------~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~ 428 (465)
+|+.|+.|++||+. .++++...+|...|++++|+|+|++|++|+.||.|++||+.+++.+..
T Consensus 163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~ 242 (377)
T 3dwl_C 163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPR 242 (377)
T ss_dssp EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEE
T ss_pred EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcce
Confidence 99999999999985 244444338999999999999999999999999999999998876322
Q ss_pred EeeecCcccccCCceeeEEEeecCC------ccceeeeec
Q 012367 429 KVDFHDRKKTSGNKITGIQGRISKN------YDNFRRFQT 462 (465)
Q Consensus 429 ~~~~~~~~~~~~~~It~~~f~p~gs------~d~~~~~~~ 462 (465)
.+ .....+...|+++.|+|++. .+.+++|+.
T Consensus 243 ~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~ 279 (377)
T 3dwl_C 243 AL---ITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQG 279 (377)
T ss_dssp EC---CCEECSSSCEEEEEEEETTEEEEEESSSSEEEECC
T ss_pred ee---EeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEe
Confidence 11 01122446899999999864 355666654
No 35
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.94 E-value=1.2e-24 Score=214.11 Aligned_cols=239 Identities=16% Similarity=0.239 Sum_probs=167.7
Q ss_pred hhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC--
Q 012367 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD-- 292 (465)
Q Consensus 215 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 292 (465)
...+.+|.+.|++++|+|++.+|+||+.|++|++||+.++............+.. +.+.......+......
T Consensus 69 ~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~------v~~sp~~~~l~s~~~d~~i 142 (343)
T 2xzm_R 69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYS------VAFSPDNRQILSAGAEREI 142 (343)
T ss_dssp EEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEE------EEECSSTTEEEEEETTSCE
T ss_pred cchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEE------EEECCCCCEEEEEcCCCEE
Confidence 4567899999999999999999999999999999999987766554433322211 11111111111111111
Q ss_pred ceeeecCCcceee---eccccceEEEEecCC-----------CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEE
Q 012367 293 EVFQIEESPLQEL---HGHKGDVLDLAWSNS-----------NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQF 357 (465)
Q Consensus 293 ~~~~~~~~~~~~~---~gh~~~V~~l~~s~~-----------~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~f 357 (465)
.+|++........ .+|...|.+++|+|+ .+|++++.|++|++||. .......+ .|...|++++|
T Consensus 143 ~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~ 221 (343)
T 2xzm_R 143 KLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSI 221 (343)
T ss_dssp EEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEE
T ss_pred EEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEE
Confidence 1233332222222 378999999999986 38999999999999995 45565565 68999999999
Q ss_pred ccCCCCEEEEEeCCCcEEEEeCC-CCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee-EeeecC-
Q 012367 358 NPIDDNYFISGSIDGKVRIWGVC-EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHD- 434 (465)
Q Consensus 358 sp~~~~~l~sgs~Dg~I~iwd~~-~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~-~~~~~~- 434 (465)
+| ++++|++|+.|+.|++||+. .........+...|.+++|+|+++++++| .|+.|++|++.+.+.... .+....
T Consensus 222 s~-~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~ 299 (343)
T 2xzm_R 222 SP-NGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPI 299 (343)
T ss_dssp CT-TSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSG
T ss_pred CC-CCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcc
Confidence 99 99999999999999999994 34343444456679999999999887655 578899999987654321 222110
Q ss_pred ----cccccCCceeeEEEeecCCc------c-ceeeeec
Q 012367 435 ----RKKTSGNKITGIQGRISKNY------D-NFRRFQT 462 (465)
Q Consensus 435 ----~~~~~~~~It~~~f~p~gs~------d-~~~~~~~ 462 (465)
....+...|+++.|+|+|.+ | .+++|+.
T Consensus 300 ~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~ 338 (343)
T 2xzm_R 300 TKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSF 338 (343)
T ss_dssp GGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEE
T ss_pred hhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEE
Confidence 01234567999999998653 4 3677764
No 36
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.94 E-value=9.3e-25 Score=211.47 Aligned_cols=166 Identities=29% Similarity=0.521 Sum_probs=148.9
Q ss_pred chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (465)
Q Consensus 214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (465)
..+.+.+|...|++++|+|++++|++|+.||.|++||+.+.
T Consensus 57 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--------------------------------------- 97 (312)
T 4ery_A 57 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--------------------------------------- 97 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---------------------------------------
T ss_pred cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC---------------------------------------
Confidence 34567899999999999999999999999999999999864
Q ss_pred eeeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCC
Q 012367 294 VFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID 371 (465)
Q Consensus 294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~D 371 (465)
+.+..+.+|...|.+++|+|+ .+|++|+.|++|++||+++++++..+. |...|.+++|+| ++++|++|+.|
T Consensus 98 ------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d 170 (312)
T 4ery_A 98 ------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYD 170 (312)
T ss_dssp ------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETT
T ss_pred ------cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcC-CCCEEEEEeCC
Confidence 235567789999999999997 499999999999999999999988884 888999999999 99999999999
Q ss_pred CcEEEEeCCCCeEEe--cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 372 GKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 372 g~I~iwd~~~~~~~~--~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
+.|++||+++++.+. ...+...+..++|+|++++|++++.||.|++||+.+++.
T Consensus 171 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 226 (312)
T 4ery_A 171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 226 (312)
T ss_dssp SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE
T ss_pred CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcE
Confidence 999999999887665 345667899999999999999999999999999998765
No 37
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.94 E-value=7.7e-26 Score=224.46 Aligned_cols=198 Identities=19% Similarity=0.296 Sum_probs=151.2
Q ss_pred hccCCCcEEEEEECCCCCEEEEEeC------CCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367 218 IQAHKGCIWTLKFSPDGRYLASGGE------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (465)
Q Consensus 218 l~~H~~~I~~l~fspdg~~LaSgs~------Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (465)
..+|.+.|++|+|||||++|||||. |+.|++|+..++...
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~---------------------------------- 83 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN---------------------------------- 83 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C----------------------------------
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc----------------------------------
Confidence 3479999999999999999999998 677888877653221
Q ss_pred CceeeecCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEE-----ecCCCceEEEEEccCCCCEEE
Q 012367 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV-----FDHHNYVTCVQFNPIDDNYFI 366 (465)
Q Consensus 292 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~-----~~h~~~V~~i~fsp~~~~~l~ 366 (465)
........+|...|.+++|+|++.+++++.||+|+|||+.+++++.. ..|...|++++|+| ++++|+
T Consensus 84 -------~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~ 155 (357)
T 4g56_B 84 -------ESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAV 155 (357)
T ss_dssp -------GGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SSSEEE
T ss_pred -------eeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEE
Confidence 11233445788999999999999999999999999999988765432 25889999999999 999999
Q ss_pred EEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCC-EEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCcee
Q 012367 367 SGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 444 (465)
Q Consensus 367 sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~-~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It 444 (465)
+|+.|+.|++||+.+++.+. +.+|...|++++|+|++. .+++++.||+|++||+.+++.... +.. ..+...++
T Consensus 156 sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~-~~~----~~~~~~v~ 230 (357)
T 4g56_B 156 SGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR-IDF----CASDTIPT 230 (357)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB-CCC----TTCCSCEE
T ss_pred EEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee-eee----cccccccc
Confidence 99999999999999988765 778999999999999885 789999999999999987765322 111 12346789
Q ss_pred eEEEeecCC-------cc-ceeeeec
Q 012367 445 GIQGRISKN-------YD-NFRRFQT 462 (465)
Q Consensus 445 ~~~f~p~gs-------~d-~~~~~~~ 462 (465)
++.|+|++. .| .+++|++
T Consensus 231 ~v~~sp~~~~~la~g~~d~~i~~wd~ 256 (357)
T 4g56_B 231 SVTWHPEKDDTFACGDETGNVSLVNI 256 (357)
T ss_dssp EEEECTTSTTEEEEEESSSCEEEEES
T ss_pred chhhhhcccceEEEeecccceeEEEC
Confidence 999998743 23 3677764
No 38
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.94 E-value=6.5e-24 Score=206.08 Aligned_cols=230 Identities=15% Similarity=0.271 Sum_probs=178.3
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceee--eeeecCCCCcccccCCCeEEeccCCCCceeEecCCc--ee
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAAS--CKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE--VF 295 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 295 (465)
+|.+.|++++|+|++++|++|+.||.|++||+.+.... .........+. .+.+.............+. +|
T Consensus 95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~l~~~~~dg~v~~~ 168 (337)
T 1gxr_A 95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY------ALAISPDSKVCFSCCSDGNIAVW 168 (337)
T ss_dssp CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEE------EEEECTTSSEEEEEETTSCEEEE
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceE------EEEECCCCCEEEEEeCCCcEEEE
Confidence 79999999999999999999999999999999886532 22222211111 1111111111111111121 23
Q ss_pred ee-cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCc
Q 012367 296 QI-EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK 373 (465)
Q Consensus 296 ~~-~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~ 373 (465)
++ ..+++..+.+|...|.+++|+|++ +|++++.|+.|++||+++++.+..+.+...+.+++|+| +++++++++.|+.
T Consensus 169 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~ 247 (337)
T 1gxr_A 169 DLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCP-TGEWLAVGMESSN 247 (337)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECT-TSSEEEEEETTSC
T ss_pred eCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECC-CCCEEEEEcCCCc
Confidence 33 235567788899999999999975 89999999999999999999999999999999999999 9999999999999
Q ss_pred EEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCC
Q 012367 374 VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKN 453 (465)
Q Consensus 374 I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs 453 (465)
|++||+.++.......|...|.+++|+|++++|++++.||.|++||+.+++.... . .+...|+++.|+|++.
T Consensus 248 i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~-~-------~~~~~v~~~~~s~~~~ 319 (337)
T 1gxr_A 248 VEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-S-------KESSSVLSCDISVDDK 319 (337)
T ss_dssp EEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-E-------ECSSCEEEEEECTTSC
T ss_pred EEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE-e-------cCCCcEEEEEECCCCC
Confidence 9999999999888889999999999999999999999999999999998766422 1 1346799999999865
Q ss_pred c------c-ceeeeecCC
Q 012367 454 Y------D-NFRRFQTPY 464 (465)
Q Consensus 454 ~------d-~~~~~~~p~ 464 (465)
+ | .+++|+.-|
T Consensus 320 ~l~~~~~dg~i~iw~~~~ 337 (337)
T 1gxr_A 320 YIVTGSGDKKATVYEVIY 337 (337)
T ss_dssp EEEEEETTSCEEEEEEEC
T ss_pred EEEEecCCCeEEEEEEeC
Confidence 4 3 367776543
No 39
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.94 E-value=6.3e-25 Score=215.73 Aligned_cols=193 Identities=21% Similarity=0.397 Sum_probs=159.4
Q ss_pred cccchhhhccCCCcEEEEEECCC---CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCcee
Q 012367 211 ALYTSQEIQAHKGCIWTLKFSPD---GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 287 (465)
Q Consensus 211 ~~~~~~~l~~H~~~I~~l~fspd---g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (465)
+....+.+.+|.+.|++|+|+|+ |++||+|+.||.|+|||+.+...
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~------------------------------- 76 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ------------------------------- 76 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-------------------------------
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-------------------------------
Confidence 44455678899999999999999 69999999999999999986211
Q ss_pred EecCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEE--ccCCCCE
Q 012367 288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQF--NPIDDNY 364 (465)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~f--sp~~~~~ 364 (465)
.....+.+|...|.+++|+|++ +|++++.|++|++||+.+++++....|...|++++| +| ++++
T Consensus 77 ------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~ 143 (368)
T 3mmy_A 77 ------------TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAP-NYSC 143 (368)
T ss_dssp ------------EEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECS-SCEE
T ss_pred ------------eeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCC-CCCE
Confidence 1125567899999999999975 899999999999999999999998899999999999 88 8899
Q ss_pred EEEEeCCCcEEEEeCCCCeEEe----------------------------------------------------------
Q 012367 365 FISGSIDGKVRIWGVCEKRVVD---------------------------------------------------------- 386 (465)
Q Consensus 365 l~sgs~Dg~I~iwd~~~~~~~~---------------------------------------------------------- 386 (465)
|++++.|+.|++||+++++.+.
T Consensus 144 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (368)
T 3mmy_A 144 VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKD 223 (368)
T ss_dssp EEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEEC
T ss_pred EEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEccc
Confidence 9999999999999987643110
Q ss_pred ---------------------------------cccCCC------------CeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367 387 ---------------------------------WADVRD------------VISAICYIPDGKGFIVGSITGTCHFYKAS 421 (465)
Q Consensus 387 ---------------------------------~~~~~~------------~V~sv~~spdg~~l~sgs~dG~v~iwd~~ 421 (465)
+..|.. .|++++|+|++++|++|+.||.|++||+.
T Consensus 224 ~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 303 (368)
T 3mmy_A 224 KQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD 303 (368)
T ss_dssp TTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred CCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECC
Confidence 011222 59999999999999999999999999999
Q ss_pred CCceeeeEeeecCcccccCCceeeEEEeecCCc
Q 012367 422 GNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY 454 (465)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~ 454 (465)
+++.. ..+. .+...|+++.|+|+|.+
T Consensus 304 ~~~~~-~~~~------~~~~~v~~~~~s~~g~~ 329 (368)
T 3mmy_A 304 ARTKL-KTSE------QLDQPISACCFNHNGNI 329 (368)
T ss_dssp TTEEE-EECC------CCSSCEEEEEECTTSSC
T ss_pred CCcEE-EEec------CCCCCceEEEECCCCCe
Confidence 87553 2222 23468999999999765
No 40
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.94 E-value=2e-24 Score=215.15 Aligned_cols=209 Identities=12% Similarity=0.133 Sum_probs=159.0
Q ss_pred cccchhhhccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeeeec--CCCCcccccC---CCeEEeccCCCC
Q 012367 211 ALYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFT--DDGGFGSNAK---EGKIKFGKKKSS 284 (465)
Q Consensus 211 ~~~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~V~iWd~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~ 284 (465)
.....+.+.+|.+.|++++|+|++ ++||+|+.||.|+|||+.+......... ....+..... .....+......
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence 444556788999999999999999 8999999999999999997665544321 1111111111 011111111111
Q ss_pred ceeEecCCceeeecCCcceeeecc---ccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEcc
Q 012367 285 HVPVVIPDEVFQIEESPLQELHGH---KGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNP 359 (465)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~gh---~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp 359 (465)
.. .+|++....+..+..| ...|.+++|+|++ +|++++.|++|++||+. ++++..+ .|...|.+++|+|
T Consensus 142 ~i------~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~ 214 (383)
T 3ei3_B 142 AT------TLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNP 214 (383)
T ss_dssp EE------EEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECS
T ss_pred EE------EEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECC
Confidence 11 2344445555555544 4889999999975 99999999999999994 6666666 5999999999999
Q ss_pred CCCC-EEEEEeCCCcEEEEeCCC----CeEEecccCCCCeEEEEEee-CCCEEEEEEcCCcEEEEEecCCceee
Q 012367 360 IDDN-YFISGSIDGKVRIWGVCE----KRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKL 427 (465)
Q Consensus 360 ~~~~-~l~sgs~Dg~I~iwd~~~----~~~~~~~~~~~~V~sv~~sp-dg~~l~sgs~dG~v~iwd~~~~~~~~ 427 (465)
++. +|++|+.|+.|++||+++ +.++...+|...|++++|+| +|++|++++.||.|++||+.+.+...
T Consensus 215 -~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 287 (383)
T 3ei3_B 215 -RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPD 287 (383)
T ss_dssp -SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCS
T ss_pred -CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence 777 999999999999999987 66776668999999999999 99999999999999999999876543
No 41
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.94 E-value=2.7e-24 Score=225.58 Aligned_cols=222 Identities=23% Similarity=0.398 Sum_probs=169.4
Q ss_pred hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC--c
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD--E 293 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 293 (465)
+.+.+|...|++++|+|+|++||+|+.||.|++|+... ............+ ..+.+...+...+...... .
T Consensus 338 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-~~~~~~~~~~~~v------~~~~~s~dg~~l~~~~~d~~v~ 410 (577)
T 2ymu_A 338 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSV------RGVAFSPDGQTIASASDDKTVK 410 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC-CEEEEEECCSSCE------EEEEECTTSSCEEEEETTSEEE
T ss_pred EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC-CEEEEecCCCCCe------EEEEECCCCCEEEEEeCCCEEE
Confidence 55679999999999999999999999999999999654 3332222221111 1122222221111111111 2
Q ss_pred eeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCC
Q 012367 294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID 371 (465)
Q Consensus 294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~D 371 (465)
+|+...+.+..+.+|...|.+++|+|++ +|++++.|++|++||.. ++++..+ .|...|++++|+| ++++|++++.|
T Consensus 411 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~sp-d~~~las~~~d 488 (577)
T 2ymu_A 411 LWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSP-DGQTIASASDD 488 (577)
T ss_dssp EECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECT-TSCEEEEEETT
T ss_pred EEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCC
Confidence 3444566778889999999999999975 89999999999999975 5555555 6999999999999 99999999999
Q ss_pred CcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec
Q 012367 372 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS 451 (465)
Q Consensus 372 g~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~ 451 (465)
+.|++||.....+..+.+|...|++++|+|+|++|++|+.||.|++||..+.. +..+.. +...|+++.|+|+
T Consensus 489 ~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~--~~~~~~------h~~~v~~~~fs~d 560 (577)
T 2ymu_A 489 KTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL--LQTLTG------HSSSVWGVAFSPD 560 (577)
T ss_dssp SEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCE--EEEEEC------CSSCEEEEEECTT
T ss_pred CEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCE--EEEEcC------CCCCEEEEEEcCC
Confidence 99999997666666688999999999999999999999999999999975432 223332 4478999999999
Q ss_pred CCc
Q 012367 452 KNY 454 (465)
Q Consensus 452 gs~ 454 (465)
|.+
T Consensus 561 g~~ 563 (577)
T 2ymu_A 561 GQT 563 (577)
T ss_dssp SSC
T ss_pred CCE
Confidence 765
No 42
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1e-24 Score=214.24 Aligned_cols=197 Identities=22% Similarity=0.385 Sum_probs=166.4
Q ss_pred chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (465)
Q Consensus 214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (465)
....+.+|.++|++++|+|+|++||+|+.||.|+|||+.++
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--------------------------------------- 64 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG--------------------------------------- 64 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC---------------------------------------
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc---------------------------------------
Confidence 34567899999999999999999999999999999998864
Q ss_pred eeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCC-
Q 012367 294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID- 371 (465)
Q Consensus 294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~D- 371 (465)
+.+..+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+.+...|.+++|+| +++++++++.+
T Consensus 65 ------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~ 137 (369)
T 3zwl_B 65 ------ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSP-CGNYFLAILDNV 137 (369)
T ss_dssp ------CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECT-TSSEEEEEECCB
T ss_pred ------hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEcc-CCCEEEEecCCc
Confidence 3355677899999999999975 99999999999999999999999999999999999999 99999999999
Q ss_pred ----CcEEEEeCCCCe------------EEecccCCC--CeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeec
Q 012367 372 ----GKVRIWGVCEKR------------VVDWADVRD--VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFH 433 (465)
Q Consensus 372 ----g~I~iwd~~~~~------------~~~~~~~~~--~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~ 433 (465)
+.|++||+.... ......+.. .+.+++|+|+++.|++|+.||.|++||+.+.......+..+
T Consensus 138 ~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 217 (369)
T 3zwl_B 138 MKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH 217 (369)
T ss_dssp TTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECC
T ss_pred cCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecC
Confidence 999999996542 222344544 89999999999999999999999999999854444444433
Q ss_pred CcccccCCceeeEEEeecCCc------c-ceeeeec
Q 012367 434 DRKKTSGNKITGIQGRISKNY------D-NFRRFQT 462 (465)
Q Consensus 434 ~~~~~~~~~It~~~f~p~gs~------d-~~~~~~~ 462 (465)
...|+++.|+|++.+ | .+++|+.
T Consensus 218 ------~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 247 (369)
T 3zwl_B 218 ------EKSISDMQFSPDLTYFITSSRDTNSFLVDV 247 (369)
T ss_dssp ------SSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ------CCceeEEEECCCCCEEEEecCCceEEEEEC
Confidence 367999999998653 3 3667764
No 43
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.94 E-value=2.3e-24 Score=216.75 Aligned_cols=231 Identities=18% Similarity=0.320 Sum_probs=176.7
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec-
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE- 298 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 298 (465)
.|.+.|++++|+|++++||+|+.||.|++||+.+.............+......+...+........ .+|++.
T Consensus 132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i------~i~d~~~ 205 (401)
T 4aez_A 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAI------HHHDVRI 205 (401)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEE------EEEETTS
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCE------EEEeccc
Confidence 3899999999999999999999999999999998776655443333222221111111111111111 123332
Q ss_pred -CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEe--CCCc
Q 012367 299 -ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS--IDGK 373 (465)
Q Consensus 299 -~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs--~Dg~ 373 (465)
...+..+.+|.+.|.+++|+|++ +|++++.|++|++||+.++.++..+ .|...|.+++|+|....++++|+ .|+.
T Consensus 206 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~ 285 (401)
T 4aez_A 206 ANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ 285 (401)
T ss_dssp SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCE
T ss_pred CcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCE
Confidence 34577888999999999999975 8999999999999999999988888 58899999999995567778776 7999
Q ss_pred EEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEE--cCCcEEEEEecCCceeee-EeeecCcccccCCceeeEEEee
Q 012367 374 VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS--ITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQGRI 450 (465)
Q Consensus 374 I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs--~dG~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~It~~~f~p 450 (465)
|++||+.+++.+....+...|++++|+|+++.+++++ .||.|++||+.++..... .+.. +...|+++.|+|
T Consensus 286 i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~------h~~~v~~~~~s~ 359 (401)
T 4aez_A 286 IHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPA------HDTRVLYSALSP 359 (401)
T ss_dssp EEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEEC------CSSCCCEEEECT
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecC------CCCCEEEEEECC
Confidence 9999999998888777888999999999999999954 899999999998765433 2322 346899999999
Q ss_pred cCCc------c-ceeeeec
Q 012367 451 SKNY------D-NFRRFQT 462 (465)
Q Consensus 451 ~gs~------d-~~~~~~~ 462 (465)
++.+ | .+++|+.
T Consensus 360 dg~~l~s~~~dg~i~iw~~ 378 (401)
T 4aez_A 360 DGRILSTAASDENLKFWRV 378 (401)
T ss_dssp TSSEEEEECTTSEEEEEEC
T ss_pred CCCEEEEEeCCCcEEEEEC
Confidence 8643 4 3677765
No 44
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.93 E-value=4.2e-25 Score=222.33 Aligned_cols=199 Identities=23% Similarity=0.354 Sum_probs=161.5
Q ss_pred cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (465)
Q Consensus 213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (465)
...+.+.+|.+.|++++|+|++++|++|+.||+|++||+.++
T Consensus 130 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~-------------------------------------- 171 (420)
T 3vl1_A 130 LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG-------------------------------------- 171 (420)
T ss_dssp EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--------------------------------------
T ss_pred ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC--------------------------------------
Confidence 344566799999999999999999999999999999999863
Q ss_pred ceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec----CCCceEEEE-----------
Q 012367 293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD----HHNYVTCVQ----------- 356 (465)
Q Consensus 293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~----h~~~V~~i~----------- 356 (465)
+.+..+.+|...|.+++|+|++ +|++++.|++|++||+++++++..+. +...|.+++
T Consensus 172 -------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 244 (420)
T 3vl1_A 172 -------SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHE 244 (420)
T ss_dssp -------CCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGG
T ss_pred -------cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeee
Confidence 3355677899999999999975 89999999999999999999998884 444555555
Q ss_pred ----------EccCCCCEEEEEeCCCcEEEEeCCCCeEEe--cccCCCCeEEEEEeeCCC-EEEEEEcCCcEEEEEecCC
Q 012367 357 ----------FNPIDDNYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGN 423 (465)
Q Consensus 357 ----------fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~--~~~~~~~V~sv~~spdg~-~l~sgs~dG~v~iwd~~~~ 423 (465)
|+| ++++|++|+.||.|++||+++++... ...|...|++++|+|++. +|++|+.||.|++||+.++
T Consensus 245 ~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 323 (420)
T 3vl1_A 245 ISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSP 323 (420)
T ss_dssp GCCCCCCTTCSSC-TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred cccCcccceEEcC-CCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC
Confidence 467 88999999999999999999877554 345788999999999999 9999999999999999987
Q ss_pred ceeeeEeeecCcccccCCceeeEEEeec-----CCcc-ceeeeec
Q 012367 424 DLKLEKVDFHDRKKTSGNKITGIQGRIS-----KNYD-NFRRFQT 462 (465)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~It~~~f~p~-----gs~d-~~~~~~~ 462 (465)
+.++..+..+. ...|+.+.+.++ ++.| .+++|+.
T Consensus 324 ~~~~~~~~~~~-----~~~v~~~~~~~~~~l~s~~~d~~v~iw~~ 363 (420)
T 3vl1_A 324 ECPVGEFLINE-----GTPINNVYFAAGALFVSSGFDTSIKLDII 363 (420)
T ss_dssp TSCSEEEEEST-----TSCEEEEEEETTEEEEEETTTEEEEEEEE
T ss_pred cCchhhhhccC-----CCCceEEEeCCCCEEEEecCCccEEEEec
Confidence 66555554432 246666644322 3444 4778874
No 45
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.93 E-value=9.2e-25 Score=219.46 Aligned_cols=204 Identities=19% Similarity=0.310 Sum_probs=168.5
Q ss_pred hhhhccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367 215 SQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (465)
Q Consensus 215 ~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (465)
...+.+|.+.|++++|+| ++++||+|+.||+|+||++.+......
T Consensus 74 ~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~---------------------------------- 119 (402)
T 2aq5_A 74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP---------------------------------- 119 (402)
T ss_dssp CCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC----------------------------------
T ss_pred CceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc----------------------------------
Confidence 356789999999999999 999999999999999999987432110
Q ss_pred eeeecCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeEEe---cCCCceEEEEEccCCCCEEEEE
Q 012367 294 VFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISG 368 (465)
Q Consensus 294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~~~---~h~~~V~~i~fsp~~~~~l~sg 368 (465)
...++..+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+ .|...|++++|+| ++++|+++
T Consensus 120 ----~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~ 194 (402)
T 2aq5_A 120 ----LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICTS 194 (402)
T ss_dssp ----BCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-TSSCEEEE
T ss_pred ----cCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC-CCCEEEEE
Confidence 114567788999999999999974 8999999999999999999999888 3888999999999 99999999
Q ss_pred eCCCcEEEEeCCCCeEEe-c-ccCCCC-eEEEEEeeCCCEEEEE---EcCCcEEEEEecCCceeeeEeeecCcccccCCc
Q 012367 369 SIDGKVRIWGVCEKRVVD-W-ADVRDV-ISAICYIPDGKGFIVG---SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (465)
Q Consensus 369 s~Dg~I~iwd~~~~~~~~-~-~~~~~~-V~sv~~spdg~~l~sg---s~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 442 (465)
+.|+.|++||+++++.+. + ..|... +.+++|+|++++|++| +.||.|++||+.+...+....... +...
T Consensus 195 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~ 269 (402)
T 2aq5_A 195 CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD-----TSSG 269 (402)
T ss_dssp ETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC-----CCSS
T ss_pred ecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEecc-----CCCc
Confidence 999999999999988776 3 467665 8999999999999999 789999999999876544333222 2356
Q ss_pred eeeEEEeecCCc-------c-ceeeeec
Q 012367 443 ITGIQGRISKNY-------D-NFRRFQT 462 (465)
Q Consensus 443 It~~~f~p~gs~-------d-~~~~~~~ 462 (465)
+..+.|+|++.+ | .+++|+.
T Consensus 270 v~~~~~s~~~~~l~~~g~~dg~i~i~d~ 297 (402)
T 2aq5_A 270 VLLPFFDPDTNIVYLCGKGDSSIRYFEI 297 (402)
T ss_dssp CEEEEEETTTTEEEEEETTCSCEEEEEE
T ss_pred eeEEEEcCCCCEEEEEEcCCCeEEEEEe
Confidence 888888887543 3 3666664
No 46
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.93 E-value=1.6e-24 Score=217.55 Aligned_cols=184 Identities=23% Similarity=0.391 Sum_probs=151.6
Q ss_pred cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (465)
Q Consensus 213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (465)
.....+.+|.+.|++++|+|++++|++|+.|++|++||+.++...
T Consensus 156 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~----------------------------------- 200 (393)
T 1erj_A 156 KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS----------------------------------- 200 (393)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE-----------------------------------
T ss_pred cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeE-----------------------------------
Confidence 345678899999999999999999999999999999999875432
Q ss_pred ceeeecCCcceeeeccccceEEEEecC-C-CEEEEEeCCCeEEEEeCCCCeEeEEe--------cCCCceEEEEEccCCC
Q 012367 293 EVFQIEESPLQELHGHKGDVLDLAWSN-S-NYLLSCSMDKTVRMWQVGCNQCLNVF--------DHHNYVTCVQFNPIDD 362 (465)
Q Consensus 293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~-~-~~l~s~s~DgtV~lWD~~~~~~l~~~--------~h~~~V~~i~fsp~~~ 362 (465)
..+ .|...|.+++|+| + .+|++|+.|++|++||+.++.++..+ .|...|++++|+| ++
T Consensus 201 ----------~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g 268 (393)
T 1erj_A 201 ----------LTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DG 268 (393)
T ss_dssp ----------EEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TS
T ss_pred ----------EEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC-CC
Confidence 111 2456789999998 5 48999999999999999999887766 4788999999999 99
Q ss_pred CEEEEEeCCCcEEEEeCCCCe-------------EEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeE
Q 012367 363 NYFISGSIDGKVRIWGVCEKR-------------VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK 429 (465)
Q Consensus 363 ~~l~sgs~Dg~I~iwd~~~~~-------------~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~ 429 (465)
++|++|+.|+.|++||+++.. ...+.+|...|.+++|+|++.+|++|+.||.|++||+.+++.. ..
T Consensus 269 ~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~-~~ 347 (393)
T 1erj_A 269 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL-LM 347 (393)
T ss_dssp SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE-EE
T ss_pred CEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE-EE
Confidence 999999999999999997532 2346789999999999999999999999999999999987653 23
Q ss_pred eeecCcccccCCceeeEEEee
Q 012367 430 VDFHDRKKTSGNKITGIQGRI 450 (465)
Q Consensus 430 ~~~~~~~~~~~~~It~~~f~p 450 (465)
+.. +...|.++.|++
T Consensus 348 l~~------h~~~v~~v~~~~ 362 (393)
T 1erj_A 348 LQG------HRNSVISVAVAN 362 (393)
T ss_dssp EEC------CSSCEEEEEECS
T ss_pred ECC------CCCCEEEEEecC
Confidence 332 335788887765
No 47
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.93 E-value=1.8e-25 Score=217.74 Aligned_cols=227 Identities=15% Similarity=0.230 Sum_probs=169.0
Q ss_pred cccCCCCCCCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECC--CCCEEEEEeCCCcEEEEecCCceeeee
Q 012367 182 SEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSP--DGRYLASGGEDGVVRIWHVTSVAASCK 259 (465)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~LaSgs~Dg~V~iWd~~~~~~~~~ 259 (465)
++..+...+......+++|...... ......+.+|.++|++++|+| ++++||||+.|++|+|||+.++..
T Consensus 22 s~~g~~lasgs~D~~v~lwd~~~~~-----~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~--- 93 (316)
T 3bg1_A 22 DYYGTRLATCSSDRSVKIFDVRNGG-----QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW--- 93 (316)
T ss_dssp CGGGCEEEEEETTTEEEEEEEETTE-----EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCC---
T ss_pred cCCCCEEEEEeCCCeEEEEEecCCC-----cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc---
Confidence 3333333333445556666432211 112456789999999999986 489999999999999999875321
Q ss_pred eecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCC--C-EEEEEeCCCeEEEEe
Q 012367 260 SFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQ 336 (465)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~--~-~l~s~s~DgtV~lWD 336 (465)
.....+.+|...|.+++|+|+ + +|++|+.|++|++||
T Consensus 94 ----------------------------------------~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd 133 (316)
T 3bg1_A 94 ----------------------------------------EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLT 133 (316)
T ss_dssp ----------------------------------------CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEE
T ss_pred ----------------------------------------eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEe
Confidence 124456789999999999986 3 899999999999999
Q ss_pred CCCCeE---eEEe-cCCCceEEEEEccCC-----------------CCEEEEEeCCCcEEEEeCCCC----eEEecccCC
Q 012367 337 VGCNQC---LNVF-DHHNYVTCVQFNPID-----------------DNYFISGSIDGKVRIWGVCEK----RVVDWADVR 391 (465)
Q Consensus 337 ~~~~~~---l~~~-~h~~~V~~i~fsp~~-----------------~~~l~sgs~Dg~I~iwd~~~~----~~~~~~~~~ 391 (465)
+..+.. ...+ .|...|.+++|+| + +.+|++|+.|++|++||+... ....+.+|.
T Consensus 134 ~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~ 212 (316)
T 3bg1_A 134 YTGEGQWEVKKINNAHTIGCNAVSWAP-AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHS 212 (316)
T ss_dssp ECSSSCEEECCBTTSSSSCBCCCEECC-CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCS
T ss_pred cCCCCCcceeeeeccccCCcceEEEcc-ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCC
Confidence 987632 2233 4888999999999 5 478999999999999999754 233477899
Q ss_pred CCeEEEEEeeCC----CEEEEEEcCCcEEEEEecCCc---eeeeEeeecCcccccCCceeeEEEeecCCc------c-ce
Q 012367 392 DVISAICYIPDG----KGFIVGSITGTCHFYKASGND---LKLEKVDFHDRKKTSGNKITGIQGRISKNY------D-NF 457 (465)
Q Consensus 392 ~~V~sv~~spdg----~~l~sgs~dG~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~It~~~f~p~gs~------d-~~ 457 (465)
..|++++|+|++ +.|++|+.||+|++|++.+.. .....+.. +...|.++.|+|++.+ | ++
T Consensus 213 ~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~------~~~~v~~v~~sp~g~~las~~~D~~v 286 (316)
T 3bg1_A 213 DWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHK------FNDVVWHVSWSITANILAVSGGDNKV 286 (316)
T ss_dssp SCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEE------CSSCEEEEEECTTTCCEEEEESSSCE
T ss_pred CceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhc------CCCcEEEEEEcCCCCEEEEEcCCCeE
Confidence 999999999987 889999999999999998632 11112221 2468999999998644 3 47
Q ss_pred eeeecC
Q 012367 458 RRFQTP 463 (465)
Q Consensus 458 ~~~~~p 463 (465)
++|...
T Consensus 287 ~lw~~~ 292 (316)
T 3bg1_A 287 TLWKES 292 (316)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 888753
No 48
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.93 E-value=1.1e-24 Score=234.71 Aligned_cols=201 Identities=19% Similarity=0.300 Sum_probs=166.5
Q ss_pred chhhhccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367 214 TSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (465)
Q Consensus 214 ~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (465)
....+.+|++.|++|+|+|++ .+|+|||.||+|+||++......
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~----------------------------------- 418 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA----------------------------------- 418 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC-----------------------------------
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc-----------------------------------
Confidence 345688999999999999875 69999999999999998753110
Q ss_pred ceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeC
Q 012367 293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSI 370 (465)
Q Consensus 293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~ 370 (465)
.......+.+|...|.+++|+|++ +|++|+.|++|+|||+.++.++..+ .|...|.+++|+| ++++|++|+.
T Consensus 419 -----~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~ 492 (694)
T 3dm0_A 419 -----YGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSL-DNRQIVSASR 492 (694)
T ss_dssp -----SCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSCEEEEET
T ss_pred -----cccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeC-CCCEEEEEeC
Confidence 012245678999999999999975 8999999999999999999998888 6999999999999 9999999999
Q ss_pred CCcEEEEeCCCCeEEec----ccCCCCeEEEEEeeCC--CEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCcee
Q 012367 371 DGKVRIWGVCEKRVVDW----ADVRDVISAICYIPDG--KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 444 (465)
Q Consensus 371 Dg~I~iwd~~~~~~~~~----~~~~~~V~sv~~spdg--~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It 444 (465)
|++|+|||+........ .+|...|.+++|+|++ ..|++|+.||+|++||+.+.+... .+.. +...|+
T Consensus 493 D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~-~~~~------h~~~v~ 565 (694)
T 3dm0_A 493 DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRS-TLAG------HTGYVS 565 (694)
T ss_dssp TSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEE-EECC------CSSCEE
T ss_pred CCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEE-EEcC------CCCCEE
Confidence 99999999977655442 4688899999999987 589999999999999999876532 2222 346899
Q ss_pred eEEEeecCCc------c-ceeeeec
Q 012367 445 GIQGRISKNY------D-NFRRFQT 462 (465)
Q Consensus 445 ~~~f~p~gs~------d-~~~~~~~ 462 (465)
++.|+|++.+ | .+++|+.
T Consensus 566 ~v~~spdg~~l~sg~~Dg~i~iwd~ 590 (694)
T 3dm0_A 566 TVAVSPDGSLCASGGKDGVVLLWDL 590 (694)
T ss_dssp EEEECTTSSEEEEEETTSBCEEEET
T ss_pred EEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 9999998654 3 4778875
No 49
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.93 E-value=5.9e-24 Score=207.08 Aligned_cols=229 Identities=15% Similarity=0.282 Sum_probs=161.8
Q ss_pred CcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCC-----
Q 012367 192 PKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG----- 266 (465)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~----- 266 (465)
..+..+++|.-..... ....+.+.+.+|.+.|++++|+|+|++|++|+.|+.|++|+................
T Consensus 58 s~D~~i~vWd~~~~~~--~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (340)
T 4aow_A 58 SRDKTIIMWKLTRDET--NYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVA 135 (340)
T ss_dssp ETTSCEEEEEECCSSS--CSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred cCCCeEEEEECCCCCc--ccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEE
Confidence 4455666665433211 112344678899999999999999999999999999999998775443322221111
Q ss_pred -------cccccCCCeEEecc-------------------------CCCCce-eEecC-C--ceeeec-CCcceeeeccc
Q 012367 267 -------FGSNAKEGKIKFGK-------------------------KKSSHV-PVVIP-D--EVFQIE-ESPLQELHGHK 309 (465)
Q Consensus 267 -------~~~~~~~~~~~~~~-------------------------~~~~~~-~~~~~-~--~~~~~~-~~~~~~~~gh~ 309 (465)
+.....++.+.++. ...... ..... . .+|++. .+.+..+.+|.
T Consensus 136 ~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~ 215 (340)
T 4aow_A 136 FSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT 215 (340)
T ss_dssp ECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred EeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCC
Confidence 11111111111111 000000 00111 1 123332 34566788999
Q ss_pred cceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe--
Q 012367 310 GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-- 386 (465)
Q Consensus 310 ~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-- 386 (465)
+.|.+++|+|++ +|++|+.|++|++||+.+.+++..+.+...|.+++|+| ++. +++++.|+.|++||++++..+.
T Consensus 216 ~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~-~~~~~~d~~i~iwd~~~~~~~~~~ 293 (340)
T 4aow_A 216 GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSP-NRY-WLCAATGPSIKIWDLEGKIIVDEL 293 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECS-SSS-EEEEEETTEEEEEETTTTEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCC-CCc-eeeccCCCEEEEEECCCCeEEEec
Confidence 999999999975 89999999999999999999999999999999999999 665 5566679999999998876543
Q ss_pred --------cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCc
Q 012367 387 --------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 424 (465)
Q Consensus 387 --------~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~ 424 (465)
...|...|++++|+|+|++|++|+.||.|+|||+.+++
T Consensus 294 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 294 KQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred cccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 23578899999999999999999999999999999874
No 50
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.93 E-value=1e-24 Score=235.14 Aligned_cols=260 Identities=18% Similarity=0.286 Sum_probs=182.9
Q ss_pred CcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccccc
Q 012367 192 PKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNA 271 (465)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~ 271 (465)
.....+++|........ .....+.+.+|.+.|++++|+|+|++|+||+.||+|+|||+.++........+...+..
T Consensus 402 s~D~~i~~W~~~~~~~~--~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~-- 477 (694)
T 3dm0_A 402 SRDKSIILWKLTKDDKA--YGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLS-- 477 (694)
T ss_dssp ETTSEEEEEECCCSTTC--SCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE--
T ss_pred eCCCcEEEEEccCCCcc--cccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEE--
Confidence 33455666643322111 11233567899999999999999999999999999999999988766555443332221
Q ss_pred CCCeEEeccCCCCceeEecCCc--eeeecCCccee----eeccccceEEEEecCCC---EEEEEeCCCeEEEEeCCCCeE
Q 012367 272 KEGKIKFGKKKSSHVPVVIPDE--VFQIEESPLQE----LHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQC 342 (465)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~gh~~~V~~l~~s~~~---~l~s~s~DgtV~lWD~~~~~~ 342 (465)
+.+............... +|+........ ..+|...|.+++|+|++ .|++++.|++|++||+.++++
T Consensus 478 ----~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~ 553 (694)
T 3dm0_A 478 ----VAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL 553 (694)
T ss_dssp ----EEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE
T ss_pred ----EEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE
Confidence 111111111111111111 22222222222 24799999999999864 799999999999999999999
Q ss_pred eEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367 343 LNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS 421 (465)
Q Consensus 343 l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~ 421 (465)
...+ .|...|++++|+| ++++|++|+.|++|+|||+.+++.+....+...|.+++|+|++.+|++++ ++.|++||+.
T Consensus 554 ~~~~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~ 631 (694)
T 3dm0_A 554 RSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLE 631 (694)
T ss_dssp EEEECCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETT
T ss_pred EEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECC
Confidence 8888 5899999999999 99999999999999999999998887667778899999999998877765 5669999999
Q ss_pred CCceeeeEeeecCc-------------ccccCCceeeEEEeecCCc------c-ceeeeec
Q 012367 422 GNDLKLEKVDFHDR-------------KKTSGNKITGIQGRISKNY------D-NFRRFQT 462 (465)
Q Consensus 422 ~~~~~~~~~~~~~~-------------~~~~~~~It~~~f~p~gs~------d-~~~~~~~ 462 (465)
++..... +..+.. .......++++.|+|+|.+ | .+++|++
T Consensus 632 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 632 SKSIVED-LKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691 (694)
T ss_dssp TTEEEEE-ECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred CCCChhh-hccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEec
Confidence 8765432 211110 0112234789999998654 4 3778874
No 51
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.93 E-value=2.4e-24 Score=214.41 Aligned_cols=196 Identities=11% Similarity=0.109 Sum_probs=145.9
Q ss_pred ccCCCcEEEEEECCCCCEEEEE--eCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce--
Q 012367 219 QAHKGCIWTLKFSPDGRYLASG--GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV-- 294 (465)
Q Consensus 219 ~~H~~~I~~l~fspdg~~LaSg--s~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 294 (465)
..|...+.+++|||||++||+| +.|++|+|||+.+............ ...+.+...+... .....+.+
T Consensus 130 ~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~-------V~~v~fspdg~~l-~s~s~~~~~~ 201 (365)
T 4h5i_A 130 TNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGE-------VKDLHFSTDGKVV-AYITGSSLEV 201 (365)
T ss_dssp CCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSC-------CCEEEECTTSSEE-EEECSSCEEE
T ss_pred CCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCc-------eEEEEEccCCceE-EeccceeEEE
Confidence 4566779999999999987655 4799999999999877665543221 1122222211111 11111111
Q ss_pred eee-cCCcc--eeeeccccceEEEEecCCC-EEEEEeCCC----eEEEEeCCCCeEe----EEe-cCCCceEEEEEccCC
Q 012367 295 FQI-EESPL--QELHGHKGDVLDLAWSNSN-YLLSCSMDK----TVRMWQVGCNQCL----NVF-DHHNYVTCVQFNPID 361 (465)
Q Consensus 295 ~~~-~~~~~--~~~~gh~~~V~~l~~s~~~-~l~s~s~Dg----tV~lWD~~~~~~l----~~~-~h~~~V~~i~fsp~~ 361 (465)
+.. ....+ ....+|...|.+++|+|++ ++++++.|+ ++++|++...... ..+ .|...|++++|+| +
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-d 280 (365)
T 4h5i_A 202 ISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-K 280 (365)
T ss_dssp EETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-T
T ss_pred EEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-C
Confidence 111 12222 2345789999999999986 788888887 6899998776542 223 5888999999999 9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEe--cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367 362 DNYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN 423 (465)
Q Consensus 362 ~~~l~sgs~Dg~I~iwd~~~~~~~~--~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~ 423 (465)
+++||+|+.|++|+|||+.+++++. ..+|...|++|+|+|||++|++|+.|++|+||++..+
T Consensus 281 g~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 281 GELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp SCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999999999999999998775 4689999999999999999999999999999999754
No 52
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.93 E-value=1.2e-23 Score=220.72 Aligned_cols=233 Identities=22% Similarity=0.388 Sum_probs=176.7
Q ss_pred chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC-
Q 012367 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD- 292 (465)
Q Consensus 214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 292 (465)
..+.+.+|.+.|++++|+|++++|++++.||+|++||+........ ....... ..+.+..............
T Consensus 295 ~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~-~~~~~~v------~~~~~s~~g~~l~~~~~dg~ 367 (577)
T 2ymu_A 295 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTL-TGHSSSV------WGVAFSPDGQTIASASDDKT 367 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEE-CCCSSCE------EEEEECTTSSEEEEEETTSE
T ss_pred EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEE-eCCCCCE------EEEEECCCCCEEEEEeCCCE
Confidence 3456789999999999999999999999999999999876543221 1111111 0111111111111111111
Q ss_pred -ceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEe
Q 012367 293 -EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS 369 (465)
Q Consensus 293 -~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs 369 (465)
.+|+...+.+..+.+|...|.+++|+|++ +|++++.|++|++||.. ++.+..+ .|...|++++|+| ++++|++++
T Consensus 368 v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~ 445 (577)
T 2ymu_A 368 VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSP-DDQTIASAS 445 (577)
T ss_dssp EEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECT-TSSEEEEEE
T ss_pred EEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECC-CCCEEEEEc
Confidence 23444566778889999999999999985 89999999999999964 5666666 6999999999999 999999999
Q ss_pred CCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEe
Q 012367 370 IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGR 449 (465)
Q Consensus 370 ~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~ 449 (465)
.|+.|++||.....+..+.+|...|++++|+|++++|++++.||.|++||..+.. ...+.. +...|++++|+
T Consensus 446 ~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~--~~~~~~------h~~~v~~l~~s 517 (577)
T 2ymu_A 446 DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL--LQTLTG------HSSSVRGVAFS 517 (577)
T ss_dssp TTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCE--EEEEEC------CSSCEEEEEEC
T ss_pred CCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCE--EEEEeC------CCCCEEEEEEc
Confidence 9999999998777677788999999999999999999999999999999975432 223333 34689999999
Q ss_pred ecCCc------c-ceeeeecC
Q 012367 450 ISKNY------D-NFRRFQTP 463 (465)
Q Consensus 450 p~gs~------d-~~~~~~~p 463 (465)
|+|.+ | .+++|+.+
T Consensus 518 ~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 518 PDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp TTSSCEEEEETTSEEEEECTT
T ss_pred CCCCEEEEEECcCEEEEEeCC
Confidence 99765 3 37788754
No 53
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.93 E-value=1.7e-23 Score=211.77 Aligned_cols=235 Identities=21% Similarity=0.354 Sum_probs=175.1
Q ss_pred hhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (465)
Q Consensus 217 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (465)
.+.+|.+.|++|+|+|+|++||+|+.||+|+|||+.++..................................+...
T Consensus 142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~---- 217 (420)
T 4gga_A 142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVR---- 217 (420)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETT----
T ss_pred EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeec----
Confidence 3457899999999999999999999999999999999877665544333322222212111111111111111100
Q ss_pred ecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeE----eEEe-cCCCceEEEEEccCCCCEEEEE--
Q 012367 297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC----LNVF-DHHNYVTCVQFNPIDDNYFISG-- 368 (465)
Q Consensus 297 ~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~----l~~~-~h~~~V~~i~fsp~~~~~l~sg-- 368 (465)
.....+..+.+|...+..+.|+|++ ++++++.|+.|++||+.+++. +..+ .|...|.+++|+|.+.++++++
T Consensus 218 ~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g 297 (420)
T 4gga_A 218 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 297 (420)
T ss_dssp SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC
T ss_pred ccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee
Confidence 1234466788999999999999875 899999999999999987652 3333 5888999999999777887765
Q ss_pred eCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEE--cCCcEEEEEecCCceeeeEeeecCcccccCCceeeE
Q 012367 369 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS--ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 446 (465)
Q Consensus 369 s~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs--~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~ 446 (465)
+.|++|++||+.++.......+...+.++.|+|+++.+++++ .||.|++||+.+++.. ..+.. |...|+++
T Consensus 298 s~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v-~~l~g------H~~~V~~l 370 (420)
T 4gga_A 298 TSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV-AELKG------HTSRVLSL 370 (420)
T ss_dssp TTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE-EEECC------CSSCEEEE
T ss_pred cCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE-EEEcC------CCCCEEEE
Confidence 479999999999999988777888899999999999998876 6999999999887653 23322 44789999
Q ss_pred EEeecCCc------cc-eeeeec
Q 012367 447 QGRISKNY------DN-FRRFQT 462 (465)
Q Consensus 447 ~f~p~gs~------d~-~~~~~~ 462 (465)
+|+|+|.+ |+ +++|+.
T Consensus 371 ~~spdg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 371 TMSPDGATVASAAADETLRLWRC 393 (420)
T ss_dssp EECTTSSCEEEEETTTEEEEECC
T ss_pred EEcCCCCEEEEEecCCeEEEEEC
Confidence 99998643 54 777764
No 54
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.93 E-value=1.7e-25 Score=222.04 Aligned_cols=198 Identities=14% Similarity=0.175 Sum_probs=151.9
Q ss_pred hccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeee
Q 012367 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 297 (465)
Q Consensus 218 l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (465)
++.|.++|++++|+|+|++||+|+.||.|+|||+.+...
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~----------------------------------------- 45 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW----------------------------------------- 45 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE-----------------------------------------
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce-----------------------------------------
Confidence 445788999999999999999999999999999876421
Q ss_pred cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCe---EeEEe-cCCCceEEEEEccCCCCEEEEEeCCC
Q 012367 298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ---CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG 372 (465)
Q Consensus 298 ~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~---~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg 372 (465)
..+..+.+|...|.+++|+|++ +|++++.|++|++||+.++. +...+ .|...|++++|+| ++++|++|+.|+
T Consensus 46 --~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~ 122 (377)
T 3dwl_C 46 --KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGAR 122 (377)
T ss_dssp --EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSS
T ss_pred --EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCC
Confidence 2345567899999999999975 89999999999999999877 44444 6999999999999 999999999999
Q ss_pred cEEEEeCCCCe----EEeccc-CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceee-------------eEeeecC
Q 012367 373 KVRIWGVCEKR----VVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL-------------EKVDFHD 434 (465)
Q Consensus 373 ~I~iwd~~~~~----~~~~~~-~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~-------------~~~~~~~ 434 (465)
.|++||+.++. ...+.. |...|++++|+|++++|++|+.||.|++||+....... .... .
T Consensus 123 ~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~ 200 (377)
T 3dwl_C 123 VISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVC--A 200 (377)
T ss_dssp CEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEE--E
T ss_pred eEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhh--h
Confidence 99999999876 344555 99999999999999999999999999999996433211 1110 0
Q ss_pred cccccCCceeeEEEeecCCc------c-ceeeeec
Q 012367 435 RKKTSGNKITGIQGRISKNY------D-NFRRFQT 462 (465)
Q Consensus 435 ~~~~~~~~It~~~f~p~gs~------d-~~~~~~~ 462 (465)
.. .+...|+++.|+|++.+ | .+++|+.
T Consensus 201 ~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~ 234 (377)
T 3dwl_C 201 EY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYP 234 (377)
T ss_dssp CC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEE
T ss_pred cc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 11 35578999999998754 3 3667764
No 55
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.93 E-value=5.7e-24 Score=213.08 Aligned_cols=241 Identities=24% Similarity=0.299 Sum_probs=178.3
Q ss_pred chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccc---------cCCCeEEeccCCCC
Q 012367 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN---------AKEGKIKFGKKKSS 284 (465)
Q Consensus 214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 284 (465)
....+.+|.+.|++++|+|++++|++++.||.|++||+.++................ .....+.+... ..
T Consensus 141 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 219 (425)
T 1r5m_A 141 LLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-DK 219 (425)
T ss_dssp EEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEET-TE
T ss_pred eeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC-CE
Confidence 345677899999999999999999999999999999998877655443322210000 00001111110 11
Q ss_pred ceeEecCCc--eeee-cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEcc
Q 012367 285 HVPVVIPDE--VFQI-EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNP 359 (465)
Q Consensus 285 ~~~~~~~~~--~~~~-~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp 359 (465)
.......+. +|++ ...++..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++++..+. |...|.+++|+|
T Consensus 220 ~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 299 (425)
T 1r5m_A 220 FVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVG 299 (425)
T ss_dssp EEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEET
T ss_pred EEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECC
Confidence 111111111 2232 235667788999999999999975 99999999999999999999888884 889999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce-------------
Q 012367 360 IDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL------------- 425 (465)
Q Consensus 360 ~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~------------- 425 (465)
++ ++++++.|+.|++||+.+++.+. +..|...|.+++|+|++++|++|+.||.|++||+.+...
T Consensus 300 -~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 377 (425)
T 1r5m_A 300 -DD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGIL 377 (425)
T ss_dssp -TT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-------------
T ss_pred -CC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeeccccccc
Confidence 77 99999999999999999887765 667889999999999999999999999999999987661
Q ss_pred ------eeeEeeecCcccccCC--ceeeEEEeecCCc------c-ceeeeecC
Q 012367 426 ------KLEKVDFHDRKKTSGN--KITGIQGRISKNY------D-NFRRFQTP 463 (465)
Q Consensus 426 ------~~~~~~~~~~~~~~~~--~It~~~f~p~gs~------d-~~~~~~~p 463 (465)
.+..+.. +.. .|++++|+|++.+ | .+++|+.+
T Consensus 378 ~~~~~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 378 NPLPIPLYASYQS------SQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp -CEECCEEEEECC------TTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred CcccchhhhhhcC------cccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 1112221 222 8999999998754 3 37777765
No 56
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.92 E-value=2.8e-23 Score=201.62 Aligned_cols=234 Identities=18% Similarity=0.322 Sum_probs=174.4
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC--ceee
Q 012367 219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD--EVFQ 296 (465)
Q Consensus 219 ~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 296 (465)
.+|.+.|++++|+|++++|++++ ||.|++|++.+............ .........+.+.............. .+|+
T Consensus 48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 125 (337)
T 1gxr_A 48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDC-LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEEC-SCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccc-cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence 48999999999999999999999 99999999987543221111000 00000011111221111111111111 1233
Q ss_pred ecCC---cceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCC
Q 012367 297 IEES---PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID 371 (465)
Q Consensus 297 ~~~~---~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~D 371 (465)
+... ....+.+|...|.+++|+|++ ++++++.|+.|++||+.+++.+..+. |...|.+++|+| ++++|++++.|
T Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d 204 (337)
T 1gxr_A 126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLD 204 (337)
T ss_dssp CCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETT
T ss_pred CCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC-CCCEEEEEecC
Confidence 3322 356678899999999999975 89999999999999999999998885 888999999999 99999999999
Q ss_pred CcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeec
Q 012367 372 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRIS 451 (465)
Q Consensus 372 g~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~ 451 (465)
+.|++||+++++.+....+...+.+++|+|+++.|++++.+|.|++||+.+.+.. .+. .+...|+++.|+|+
T Consensus 205 g~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~--~~~------~~~~~v~~~~~~~~ 276 (337)
T 1gxr_A 205 NTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY--QLH------LHESCVLSLKFAYC 276 (337)
T ss_dssp SEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE--EEC------CCSSCEEEEEECTT
T ss_pred CcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE--EEc------CCccceeEEEECCC
Confidence 9999999999998887788999999999999999999999999999999987542 221 23468999999998
Q ss_pred CCc------c-ceeeeecC
Q 012367 452 KNY------D-NFRRFQTP 463 (465)
Q Consensus 452 gs~------d-~~~~~~~p 463 (465)
+.+ | .+++|+..
T Consensus 277 ~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 277 GKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp SSEEEEEETTSEEEEEETT
T ss_pred CCEEEEecCCCcEEEEECC
Confidence 753 3 36777653
No 57
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.1e-24 Score=224.73 Aligned_cols=204 Identities=13% Similarity=0.125 Sum_probs=158.8
Q ss_pred hhhccCCCcEEEEEECCC------CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEe
Q 012367 216 QEIQAHKGCIWTLKFSPD------GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 289 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspd------g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (465)
+.+.+|.+.|++|+|+|+ +.+||||+.||+|+|||+.+.......
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~----------------------------- 251 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV----------------------------- 251 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE-----------------------------
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc-----------------------------
Confidence 446788999999999997 579999999999999999764221000
Q ss_pred cCCceeeecCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCe-EeEEe-cCCCceEEE--EEccCCC-CE
Q 012367 290 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ-CLNVF-DHHNYVTCV--QFNPIDD-NY 364 (465)
Q Consensus 290 ~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~-~l~~~-~h~~~V~~i--~fsp~~~-~~ 364 (465)
......+...+.+|...|++++|++++.|++|+.||+|++||+.++. +...+ .|...|++| .|+| ++ ++
T Consensus 252 -----~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-~g~~~ 325 (524)
T 2j04_B 252 -----FKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD-FEDTV 325 (524)
T ss_dssp -----EECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT-TSCCE
T ss_pred -----ceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC-CCCeE
Confidence 00011345677899999999999988899999999999999998764 44445 599999999 5677 77 89
Q ss_pred EEEEeCCCcEEEEeCCCCeEEe-cccCC--CCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCC
Q 012367 365 FISGSIDGKVRIWGVCEKRVVD-WADVR--DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN 441 (465)
Q Consensus 365 l~sgs~Dg~I~iwd~~~~~~~~-~~~~~--~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 441 (465)
|+||+.|++|+|||+++++... +.+|. ..|.+++|+|+++.+++++.|++|++||++...... .+.. +..
T Consensus 326 laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~-~l~g------H~~ 398 (524)
T 2j04_B 326 VSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVH-PLVS------RET 398 (524)
T ss_dssp EEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCE-EEEE------CSS
T ss_pred EEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccce-eeec------CCC
Confidence 9999999999999998865432 33443 358899999999999999999999999998865432 2222 347
Q ss_pred ceeeEEEeecCCc------cc-eeeee
Q 012367 442 KITGIQGRISKNY------DN-FRRFQ 461 (465)
Q Consensus 442 ~It~~~f~p~gs~------d~-~~~~~ 461 (465)
.|++++|+|+|.+ |+ +++|+
T Consensus 399 ~V~sva~Sp~g~~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 399 TITAIGVSRLHPMVLAGSADGSLIITN 425 (524)
T ss_dssp CEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred ceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence 8999999998643 54 56665
No 58
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.92 E-value=7.1e-24 Score=211.50 Aligned_cols=236 Identities=12% Similarity=0.126 Sum_probs=172.6
Q ss_pred chhhhccCCCcEEEEEECCC----C---CEEEEEeCCCcEEEEecCCcee-----eeeeecCCCCcccccCCCeEEec--
Q 012367 214 TSQEIQAHKGCIWTLKFSPD----G---RYLASGGEDGVVRIWHVTSVAA-----SCKSFTDDGGFGSNAKEGKIKFG-- 279 (465)
Q Consensus 214 ~~~~l~~H~~~I~~l~fspd----g---~~LaSgs~Dg~V~iWd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-- 279 (465)
....+.+|..+|++++|+|+ | ++|++|+.||.|++|++.+... ............ ......+.+.
T Consensus 54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~ 132 (397)
T 1sq9_A 54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMK-KHSFWALKWGAS 132 (397)
T ss_dssp GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGG-GSCEEEEEEECC
T ss_pred cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccC-CCcEEEEEEeec
Confidence 45667799999999999999 9 9999999999999999987654 322222210000 0111112222
Q ss_pred --cCCCC-ceeEecCC--ceeeecC-------Ccce-----ee-------eccccceEEEEecCCCEEEEEeCCCeEEEE
Q 012367 280 --KKKSS-HVPVVIPD--EVFQIEE-------SPLQ-----EL-------HGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 335 (465)
Q Consensus 280 --~~~~~-~~~~~~~~--~~~~~~~-------~~~~-----~~-------~gh~~~V~~l~~s~~~~l~s~s~DgtV~lW 335 (465)
..... .......+ .+|++.. ..+. .+ ..|...|.+++|+|+++|++++.|+.|++|
T Consensus 133 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~ 212 (397)
T 1sq9_A 133 NDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQIS 212 (397)
T ss_dssp C----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEE
T ss_pred cCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEE
Confidence 11111 11111122 1344433 3444 66 348999999999997788899999999999
Q ss_pred eCCCCeEeEEec----C---CCceEEEEEccCCCCEEEEEeCC---CcEEEEeCCCCeEEe-ccc-------------CC
Q 012367 336 QVGCNQCLNVFD----H---HNYVTCVQFNPIDDNYFISGSID---GKVRIWGVCEKRVVD-WAD-------------VR 391 (465)
Q Consensus 336 D~~~~~~l~~~~----h---~~~V~~i~fsp~~~~~l~sgs~D---g~I~iwd~~~~~~~~-~~~-------------~~ 391 (465)
|+++++++..+. | ...|.+++|+| ++++|++++.| +.|++||+.+++.+. +.. |.
T Consensus 213 d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (397)
T 1sq9_A 213 ELSTLRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS 291 (397)
T ss_dssp ETTTTEEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBS
T ss_pred ECCCCceeEEEeccccccccCCccceEEECC-CCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccC
Confidence 999999998885 6 88999999999 99999999999 999999999887665 555 89
Q ss_pred CCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCccccc---------------CCceeeEEEeecC
Q 012367 392 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS---------------GNKITGIQGRISK 452 (465)
Q Consensus 392 ~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~---------------~~~It~~~f~p~g 452 (465)
..|.+++|+|++++|++|+.||.|++||+.+++... .+........+ ...|+++.|+|++
T Consensus 292 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g 366 (397)
T 1sq9_A 292 SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERIT-TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG 366 (397)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE-EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeE-EEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence 999999999999999999999999999999876533 33311111112 5789999999997
No 59
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.92 E-value=1.6e-23 Score=208.89 Aligned_cols=222 Identities=20% Similarity=0.306 Sum_probs=172.0
Q ss_pred cccccchhhhccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCcee
Q 012367 209 FTALYTSQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 287 (465)
Q Consensus 209 ~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (465)
+........+.+|.+.|++|+|+| ++++||+|+.||.|+|||+.+...........
T Consensus 30 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----------------------- 86 (408)
T 4a11_B 30 LELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA----------------------- 86 (408)
T ss_dssp EEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE-----------------------
T ss_pred cccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccc-----------------------
Confidence 333444566789999999999999 99999999999999999998754322111000
Q ss_pred EecCCceeeecCCcceeeeccccceEEEEecC-CC-EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccC--CCC
Q 012367 288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI--DDN 363 (465)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~-~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~--~~~ 363 (465)
. .........+|...|.+++|+| ++ +|++++.|++|++||+.+++.+..+.+...+.++.|+|. ++.
T Consensus 87 ------~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (408)
T 4a11_B 87 ------V---CSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHC 157 (408)
T ss_dssp ------E---EEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCC
T ss_pred ------c---ccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCc
Confidence 0 0001112346999999999998 44 899999999999999999999999999999999999984 234
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCC-EEEEEEcCCcEEEEEecCCceeeeEeeecCc------
Q 012367 364 YFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDR------ 435 (465)
Q Consensus 364 ~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~-~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~------ 435 (465)
++++|+.|+.|++||+.++..+. +..|...|++++|+|+++ .|++|+.||.|++||++........+..+..
T Consensus 158 ~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 237 (408)
T 4a11_B 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAV 237 (408)
T ss_dssp EEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCT
T ss_pred EEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceee
Confidence 99999999999999999876554 677999999999999998 5899999999999999887654444322111
Q ss_pred ---ccccCCceeeEEEeecCCc------c-ceeeeec
Q 012367 436 ---KKTSGNKITGIQGRISKNY------D-NFRRFQT 462 (465)
Q Consensus 436 ---~~~~~~~It~~~f~p~gs~------d-~~~~~~~ 462 (465)
...+...|+++.|+|++.+ | .+++|+.
T Consensus 238 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 274 (408)
T 4a11_B 238 ESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNS 274 (408)
T ss_dssp TTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ccccccccCceeEEEEcCCCCEEEEecCCCeEEEEEC
Confidence 1335578999999998653 3 3677764
No 60
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3e-23 Score=203.75 Aligned_cols=242 Identities=17% Similarity=0.247 Sum_probs=179.7
Q ss_pred cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccc-ccCCC-eEEeccCC----CCce
Q 012367 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS-NAKEG-KIKFGKKK----SSHV 286 (465)
Q Consensus 213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~----~~~~ 286 (465)
...+.+.+|.+.|++++|+|++++|++++.||+|++||+.++............... ....+ .+...... ....
T Consensus 65 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i 144 (369)
T 3zwl_B 65 ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSI 144 (369)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEE
T ss_pred hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEE
Confidence 445677899999999999999999999999999999999987766555422111100 00111 11111100 0111
Q ss_pred eEecC------CceeeecCCcceeeecccc--ceEEEEecCCC-EEEEEeCCCeEEEEeCCC-CeEeEEec-CCCceEEE
Q 012367 287 PVVIP------DEVFQIEESPLQELHGHKG--DVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-NQCLNVFD-HHNYVTCV 355 (465)
Q Consensus 287 ~~~~~------~~~~~~~~~~~~~~~gh~~--~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~-~~~l~~~~-h~~~V~~i 355 (465)
.++.. .........+...+.+|.+ .|.+++|+|++ +|++++.|+.|++||+.+ +..+..+. |...|.++
T Consensus 145 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 224 (369)
T 3zwl_B 145 NIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDM 224 (369)
T ss_dssp EEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEE
T ss_pred EEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEE
Confidence 11110 0111112345666777877 99999999975 899999999999999998 77787774 88899999
Q ss_pred EEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCC--------------cEEEEEec
Q 012367 356 QFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG--------------TCHFYKAS 421 (465)
Q Consensus 356 ~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG--------------~v~iwd~~ 421 (465)
+|+| ++++|++++.|+.|++||+.+++.+....+...+.+++|+|+++++++++.++ .+++||+.
T Consensus 225 ~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 303 (369)
T 3zwl_B 225 QFSP-DLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKI 303 (369)
T ss_dssp EECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETT
T ss_pred EECC-CCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecC
Confidence 9999 99999999999999999999998888777889999999999999999999998 89999998
Q ss_pred CCceeeeEeeecCcccccCCceeeEEEeecCCc------c-ceeeeec
Q 012367 422 GNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY------D-NFRRFQT 462 (465)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~------d-~~~~~~~ 462 (465)
+++... .+.. +...|+++.|+|++.+ | .+++|+.
T Consensus 304 ~~~~~~-~~~~------~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 344 (369)
T 3zwl_B 304 FEEEIG-RVQG------HFGPLNTVAISPQGTSYASGGEDGFIRLHHF 344 (369)
T ss_dssp TCCEEE-EEEC------CSSCEEEEEECTTSSEEEEEETTSEEEEEEE
T ss_pred CCcchh-heec------ccCcEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 876532 2322 3468999999998653 3 3677764
No 61
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.8e-23 Score=206.36 Aligned_cols=205 Identities=20% Similarity=0.299 Sum_probs=164.9
Q ss_pred cchhhhccCCCcEEEEEECCC--CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec
Q 012367 213 YTSQEIQAHKGCIWTLKFSPD--GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 290 (465)
Q Consensus 213 ~~~~~l~~H~~~I~~l~fspd--g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (465)
...+.+.+|.++|++++|+|+ +++|++|+.||.|++||+.+...
T Consensus 46 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~---------------------------------- 91 (379)
T 3jrp_A 46 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW---------------------------------- 91 (379)
T ss_dssp EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEE----------------------------------
T ss_pred eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCce----------------------------------
Confidence 345677899999999999987 99999999999999999886431
Q ss_pred CCceeeecCCcceeeeccccceEEEEecCC--C-EEEEEeCCCeEEEEeCCCCeE---eEEecCCCceEEEEEccC----
Q 012367 291 PDEVFQIEESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQC---LNVFDHHNYVTCVQFNPI---- 360 (465)
Q Consensus 291 ~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~--~-~l~s~s~DgtV~lWD~~~~~~---l~~~~h~~~V~~i~fsp~---- 360 (465)
..+..+.+|...|.+++|+|+ + +|++++.|++|++||+.++.. .....|...|.+++|+|.
T Consensus 92 ---------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 92 ---------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp ---------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred ---------eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence 134556679999999999986 4 899999999999999988733 233368899999999995
Q ss_pred --------CCCEEEEEeCCCcEEEEeCCCCe----E-EecccCCCCeEEEEEeeC---CCEEEEEEcCCcEEEEEecCCc
Q 012367 361 --------DDNYFISGSIDGKVRIWGVCEKR----V-VDWADVRDVISAICYIPD---GKGFIVGSITGTCHFYKASGND 424 (465)
Q Consensus 361 --------~~~~l~sgs~Dg~I~iwd~~~~~----~-~~~~~~~~~V~sv~~spd---g~~l~sgs~dG~v~iwd~~~~~ 424 (465)
++.+|++|+.|+.|++||++++. + ..+.+|...|++++|+|+ +++|++++.||.|++||+.++.
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 58999999999999999997653 2 246779999999999999 8999999999999999999875
Q ss_pred eeeeEeeecCcccccCCceeeEEEeecCCc------c-ceeeeec
Q 012367 425 LKLEKVDFHDRKKTSGNKITGIQGRISKNY------D-NFRRFQT 462 (465)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~It~~~f~p~gs~------d-~~~~~~~ 462 (465)
......... ...+...|+++.|+|++.+ | .+++|+.
T Consensus 243 ~~~~~~~~~--~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~ 285 (379)
T 3jrp_A 243 GPWKKTLLK--EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 285 (379)
T ss_dssp SCCEEEESS--SSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred ccceeeeec--cccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence 433211111 1224568999999998754 3 3677764
No 62
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.92 E-value=7.6e-24 Score=210.73 Aligned_cols=149 Identities=9% Similarity=0.000 Sum_probs=115.9
Q ss_pred ccccceEEEEecCCC-EEE--EEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe
Q 012367 307 GHKGDVLDLAWSNSN-YLL--SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR 383 (465)
Q Consensus 307 gh~~~V~~l~~s~~~-~l~--s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~ 383 (465)
.+...+.+++|+|++ +++ +++.|++|+|||+.+++++..+.|...|++++|+| +++++++++.++ +++|+..++.
T Consensus 131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fsp-dg~~l~s~s~~~-~~~~~~~~~~ 208 (365)
T 4h5i_A 131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFST-DGKVVAYITGSS-LEVISTVTGS 208 (365)
T ss_dssp CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECT-TSSEEEEECSSC-EEEEETTTCC
T ss_pred CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEcc-CCceEEecccee-EEEEEeccCc
Confidence 345668999999987 444 45579999999999999999999999999999999 999999998655 4555443221
Q ss_pred E-----------------------------------------------------EecccCCCCeEEEEEeeCCCEEEEEE
Q 012367 384 V-----------------------------------------------------VDWADVRDVISAICYIPDGKGFIVGS 410 (465)
Q Consensus 384 ~-----------------------------------------------------~~~~~~~~~V~sv~~spdg~~l~sgs 410 (465)
. ..+.+|...|++++|+|||++|++|+
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs 288 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS 288 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc
Confidence 0 01234567799999999999999999
Q ss_pred cCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc------c-ceeeeecC
Q 012367 411 ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY------D-NFRRFQTP 463 (465)
Q Consensus 411 ~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~------d-~~~~~~~p 463 (465)
.||+|+|||+.+++....... .|...|++++|+|+|.+ | ++|+|++|
T Consensus 289 ~D~~V~iwd~~~~~~~~~~~~------gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 289 NDNSIALVKLKDLSMSKIFKQ------AHSFAITEVTISPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp TTSCEEEEETTTTEEEEEETT------SSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred CCCEEEEEECCCCcEEEEecC------cccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 999999999998765332222 24578999999999654 5 48999988
No 63
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.92 E-value=6e-23 Score=202.49 Aligned_cols=203 Identities=14% Similarity=0.166 Sum_probs=153.0
Q ss_pred chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (465)
Q Consensus 214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (465)
..+.+.+|.+.|++++|+|++++|++|+.||.|++||+.+............. .....+.+...............
T Consensus 44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~d~~ 119 (372)
T 1k8k_C 44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRIN----RAARCVRWAPNEKKFAVGSGSRV 119 (372)
T ss_dssp EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCS----SCEEEEEECTTSSEEEEEETTSS
T ss_pred eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCC----CceeEEEECCCCCEEEEEeCCCE
Confidence 45677899999999999999999999999999999999877544332211110 00111112211111111111121
Q ss_pred --eeeecCCc-----ceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeC------------------CCCeEeEEe-
Q 012367 294 --VFQIEESP-----LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV------------------GCNQCLNVF- 346 (465)
Q Consensus 294 --~~~~~~~~-----~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~------------------~~~~~l~~~- 346 (465)
+|++.... .....+|...|.+++|+|++ +|++++.|+.|++||+ ..++++..+
T Consensus 120 v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
T 1k8k_C 120 ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS 199 (372)
T ss_dssp EEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC
T ss_pred EEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC
Confidence 23343222 22335789999999999975 8999999999999995 467888888
Q ss_pred cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367 347 DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG 422 (465)
Q Consensus 347 ~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~ 422 (465)
.|...|.+++|+| ++++|++++.|+.|++||+.+++.+. +..|...|++++|+|++++|++| .||.|++|++.+
T Consensus 200 ~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 200 SSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp CCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CCCCeEEEEEECC-CCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 5888999999999 99999999999999999998877664 67788899999999999988887 999999999998
No 64
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.92 E-value=8.5e-24 Score=212.71 Aligned_cols=196 Identities=14% Similarity=0.195 Sum_probs=157.9
Q ss_pred chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (465)
Q Consensus 214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (465)
..+.+.+| ..+....|+|++++||+|+.||.|++||+.+..
T Consensus 90 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------------------------------------- 130 (420)
T 3vl1_A 90 GSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-------------------------------------- 130 (420)
T ss_dssp TTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE--------------------------------------
T ss_pred eeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc--------------------------------------
Confidence 34555566 555666889999999999999999999987642
Q ss_pred eeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCC
Q 012367 294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID 371 (465)
Q Consensus 294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~D 371 (465)
....+.+|.+.|.+++|+|++ +|++++.|++|++||+.+++++..+. |...|++++|+| ++++|++|+.|
T Consensus 131 -------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d 202 (420)
T 3vl1_A 131 -------QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLD 202 (420)
T ss_dssp -------EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET-TTTEEEEEETT
T ss_pred -------eeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC-CCCEEEEEcCC
Confidence 234456899999999999975 89999999999999999999888884 899999999999 99999999999
Q ss_pred CcEEEEeCCCCeEEec-c---cCCCCeEE---------------------EEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367 372 GKVRIWGVCEKRVVDW-A---DVRDVISA---------------------ICYIPDGKGFIVGSITGTCHFYKASGNDLK 426 (465)
Q Consensus 372 g~I~iwd~~~~~~~~~-~---~~~~~V~s---------------------v~~spdg~~l~sgs~dG~v~iwd~~~~~~~ 426 (465)
+.|++||+++++.+.. . .+...|.+ ++|+|+|++|++|+.||.|++||+.+++..
T Consensus 203 ~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~ 282 (420)
T 3vl1_A 203 GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQT 282 (420)
T ss_dssp SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEE
T ss_pred CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCcee
Confidence 9999999998877652 2 23444444 455788999999999999999999987654
Q ss_pred eeEeeecCcccccCCceeeEEEeecCC-------cc-ceeeeec
Q 012367 427 LEKVDFHDRKKTSGNKITGIQGRISKN-------YD-NFRRFQT 462 (465)
Q Consensus 427 ~~~~~~~~~~~~~~~~It~~~f~p~gs-------~d-~~~~~~~ 462 (465)
..... .+...|+++.|+|++. .| .+++|+.
T Consensus 283 ~~~~~------~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~ 320 (420)
T 3vl1_A 283 IQLPS------KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDL 320 (420)
T ss_dssp EEECC------TTSSCEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred EEccc------ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEc
Confidence 33221 2346899999999876 23 4677765
No 65
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.92 E-value=7.5e-24 Score=212.78 Aligned_cols=199 Identities=16% Similarity=0.263 Sum_probs=162.2
Q ss_pred cchhhhccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367 213 YTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (465)
Q Consensus 213 ~~~~~l~~H~~~I~~l~fspdg-~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (465)
.+...+.+|.+.|++++|+|++ .+|++|+.||+|+|||+.++..
T Consensus 122 ~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~----------------------------------- 166 (402)
T 2aq5_A 122 EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA----------------------------------- 166 (402)
T ss_dssp SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE-----------------------------------
T ss_pred CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc-----------------------------------
Confidence 3456788999999999999998 6999999999999999987532
Q ss_pred CceeeecCCcceee--eccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe--cCCCc-eEEEEEccCCCCEE
Q 012367 292 DEVFQIEESPLQEL--HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNY-VTCVQFNPIDDNYF 365 (465)
Q Consensus 292 ~~~~~~~~~~~~~~--~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~--~h~~~-V~~i~fsp~~~~~l 365 (465)
+..+ .+|...|.+++|+|++ +|++++.|++|++||+++++++..+ .|... +.+++|+| ++.+|
T Consensus 167 ----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l 235 (402)
T 2aq5_A 167 ----------VLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS-EGKIL 235 (402)
T ss_dssp ----------EEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECS-TTEEE
T ss_pred ----------cEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcC-CCcEE
Confidence 3444 5799999999999975 8999999999999999999999887 46654 89999999 99999
Q ss_pred EEE---eCCCcEEEEeCCCCeE---EecccCCCCeEEEEEeeCCCEEEE-EEcCCcEEEEEecCCceeeeEeeecCcccc
Q 012367 366 ISG---SIDGKVRIWGVCEKRV---VDWADVRDVISAICYIPDGKGFIV-GSITGTCHFYKASGNDLKLEKVDFHDRKKT 438 (465)
Q Consensus 366 ~sg---s~Dg~I~iwd~~~~~~---~~~~~~~~~V~sv~~spdg~~l~s-gs~dG~v~iwd~~~~~~~~~~~~~~~~~~~ 438 (465)
++| +.|+.|++||+++... .....+...|.+++|+|+++.|++ |+.||.|++||+.+++..+..+..+.
T Consensus 236 ~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~---- 311 (402)
T 2aq5_A 236 TTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS---- 311 (402)
T ss_dssp EEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC----
T ss_pred EEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc----
Confidence 999 7899999999987543 233467788999999999999865 55799999999998874233332221
Q ss_pred cCCceeeEEEeecCCcc-----ceeeee
Q 012367 439 SGNKITGIQGRISKNYD-----NFRRFQ 461 (465)
Q Consensus 439 ~~~~It~~~f~p~gs~d-----~~~~~~ 461 (465)
+...|+++.|+|++.+. .+++|.
T Consensus 312 ~~~~v~~~~~sp~~~~~~s~~~~~~~~~ 339 (402)
T 2aq5_A 312 SKESQRGMGYMPKRGLEVNKCEIARFYK 339 (402)
T ss_dssp CSSCCSEEEECCGGGSCGGGTEEEEEEE
T ss_pred cCCcccceEEecccccceecceeEEEEE
Confidence 34689999999997653 256665
No 66
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1e-23 Score=229.50 Aligned_cols=200 Identities=20% Similarity=0.347 Sum_probs=160.6
Q ss_pred hhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (465)
Q Consensus 215 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (465)
.+.+.+|.++|++++|+|+|++||+|+.||+|+|||+.+...
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-------------------------------------- 43 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-------------------------------------- 43 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE--------------------------------------
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC--------------------------------------
Confidence 356789999999999999999999999999999999874211
Q ss_pred eeecCCcceeeeccccceEEEEecCC---CEEEEEeCCCeEEEEeCCCCe--EeEEe-cCCCceEEEEEccCC--CCEEE
Q 012367 295 FQIEESPLQELHGHKGDVLDLAWSNS---NYLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPID--DNYFI 366 (465)
Q Consensus 295 ~~~~~~~~~~~~gh~~~V~~l~~s~~---~~l~s~s~DgtV~lWD~~~~~--~l~~~-~h~~~V~~i~fsp~~--~~~l~ 366 (465)
..+..+.+|.+.|.+++|+|+ .+|++|+.||+|++||+.++. .+..+ .|...|++++|+| + +++++
T Consensus 44 -----~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~~l~ 117 (753)
T 3jro_A 44 -----KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLL 117 (753)
T ss_dssp -----EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEE
T ss_pred -----ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECC-CCCCCEEE
Confidence 235667789999999999864 499999999999999999986 55555 5889999999999 7 99999
Q ss_pred EEeCCCcEEEEeCCCC---eEEecccCCCCeEEEEEee-------------CCCEEEEEEcCCcEEEEEecCCceeee-E
Q 012367 367 SGSIDGKVRIWGVCEK---RVVDWADVRDVISAICYIP-------------DGKGFIVGSITGTCHFYKASGNDLKLE-K 429 (465)
Q Consensus 367 sgs~Dg~I~iwd~~~~---~~~~~~~~~~~V~sv~~sp-------------dg~~l~sgs~dG~v~iwd~~~~~~~~~-~ 429 (465)
+|+.||.|++||+.++ ......+|...|++++|+| ++..|++|+.||.|++||+.++..... .
T Consensus 118 sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 197 (753)
T 3jro_A 118 VASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE 197 (753)
T ss_dssp EEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred EEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceee
Confidence 9999999999999876 3445678999999999999 589999999999999999987754322 1
Q ss_pred eeecCcccccCCceeeEEEeec---CCc------c-ceeeeec
Q 012367 430 VDFHDRKKTSGNKITGIQGRIS---KNY------D-NFRRFQT 462 (465)
Q Consensus 430 ~~~~~~~~~~~~~It~~~f~p~---gs~------d-~~~~~~~ 462 (465)
..+. .+...|+++.|+|+ +.+ | .+++|+.
T Consensus 198 ~~~~----~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~ 236 (753)
T 3jro_A 198 STLE----GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 236 (753)
T ss_dssp EEEC----CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEE
T ss_pred eeec----CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecC
Confidence 1122 24578999999998 433 3 3677764
No 67
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.5e-23 Score=200.04 Aligned_cols=234 Identities=21% Similarity=0.304 Sum_probs=171.7
Q ss_pred ccccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEe
Q 012367 210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 289 (465)
Q Consensus 210 ~~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (465)
......+++.+|.+.|++++| |++++||+|+.||.|++||+.+.............+.. +.+...........
T Consensus 6 ~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~------~~~~~~~~~l~~~~ 78 (313)
T 3odt_A 6 TGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNS------VCYDSEKELLLFGG 78 (313)
T ss_dssp CCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEE------EEEETTTTEEEEEE
T ss_pred ccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEE------EEECCCCCEEEEec
Confidence 445566788999999999999 99999999999999999999887665554443322211 11111111111111
Q ss_pred cCCc--eeee----cCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCC
Q 012367 290 IPDE--VFQI----EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDD 362 (465)
Q Consensus 290 ~~~~--~~~~----~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~ 362 (465)
..+. +|.+ ...++..+.+|...|.+++| .++++++++.|++|++|| .+..+..+ .|...|.+++|+|.++
T Consensus 79 ~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (313)
T 3odt_A 79 KDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF-QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSE 155 (313)
T ss_dssp TTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTT
T ss_pred CCCeEEEEEeeecCCCCcccchhhcccCEEEEEe-cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCC
Confidence 1111 1222 23457788899999999999 456999999999999999 56666666 5889999999998889
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEeccc-CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCC
Q 012367 363 NYFISGSIDGKVRIWGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN 441 (465)
Q Consensus 363 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 441 (465)
+++++++.|+.|++||.... ...+.. |...|.+++|+|++. +++|+.||.|++||+.+++... .+.. +..
T Consensus 156 ~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~-~~~~------~~~ 226 (313)
T 3odt_A 156 NKFLTASADKTIKLWQNDKV-IKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLR-TYEG------HES 226 (313)
T ss_dssp TEEEEEETTSCEEEEETTEE-EEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEE-EEEC------CSS
T ss_pred CEEEEEECCCCEEEEecCce-EEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhh-hhhc------CCc
Confidence 99999999999999994332 333444 899999999999998 9999999999999999876532 3322 346
Q ss_pred ceeeEEEeecCC-----cc-ceeeeec
Q 012367 442 KITGIQGRISKN-----YD-NFRRFQT 462 (465)
Q Consensus 442 ~It~~~f~p~gs-----~d-~~~~~~~ 462 (465)
.|+++.|+|++. .| .+++|+.
T Consensus 227 ~i~~~~~~~~~~l~~~~~dg~v~iwd~ 253 (313)
T 3odt_A 227 FVYCIKLLPNGDIVSCGEDRTVRIWSK 253 (313)
T ss_dssp CEEEEEECTTSCEEEEETTSEEEEECT
T ss_pred eEEEEEEecCCCEEEEecCCEEEEEEC
Confidence 899999999852 23 3666664
No 68
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.92 E-value=4.4e-23 Score=209.03 Aligned_cols=240 Identities=18% Similarity=0.297 Sum_probs=158.3
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCcee-----------eeeeecCCCCcc------cccCCCeEEeccCC
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAA-----------SCKSFTDDGGFG------SNAKEGKIKFGKKK 282 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~-----------~~~~~~~~~~~~------~~~~~~~~~~~~~~ 282 (465)
.|.+.|++|+|+|+|++||+|+.||.|+||++.+... ............ .......+.+....
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 5789999999999999999999999999999987652 222222210000 00111122222221
Q ss_pred C--CceeEecCC--ceeeecC----------------------------------------Cccee-eeccccceEEEEe
Q 012367 283 S--SHVPVVIPD--EVFQIEE----------------------------------------SPLQE-LHGHKGDVLDLAW 317 (465)
Q Consensus 283 ~--~~~~~~~~~--~~~~~~~----------------------------------------~~~~~-~~gh~~~V~~l~~ 317 (465)
. ..+...... .+|++.. .+... ..+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 1 111111111 1222211 11112 3689999999999
Q ss_pred cCCC-EEEEEeCCCeEEEEeCC-CCeEeEEe--------cCCCceEEEEEccCCC-CEEEEEeCCCcEEEEeCCCCeE--
Q 012367 318 SNSN-YLLSCSMDKTVRMWQVG-CNQCLNVF--------DHHNYVTCVQFNPIDD-NYFISGSIDGKVRIWGVCEKRV-- 384 (465)
Q Consensus 318 s~~~-~l~s~s~DgtV~lWD~~-~~~~l~~~--------~h~~~V~~i~fsp~~~-~~l~sgs~Dg~I~iwd~~~~~~-- 384 (465)
+|++ +|++| .|++|++||+. .+.++..+ .|...|++++|+| ++ ++|++|+.||.|++||++++..
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 9985 77787 89999999999 45555543 5889999999999 76 9999999999999999998774
Q ss_pred ---EecccCCC------------CeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccc---------cC
Q 012367 385 ---VDWADVRD------------VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT---------SG 440 (465)
Q Consensus 385 ---~~~~~~~~------------~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~---------~~ 440 (465)
..+..|.. .|++++|+|+|++|++++. |.|++||+......+..+..|..... ..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 342 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence 44566665 8999999999999999999 99999999873333444444432111 00
Q ss_pred CceeeEEEeecCCc------c-ceeeeec
Q 012367 441 NKITGIQGRISKNY------D-NFRRFQT 462 (465)
Q Consensus 441 ~~It~~~f~p~gs~------d-~~~~~~~ 462 (465)
..+..+.|+|++.+ | .+++|+.
T Consensus 343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~ 371 (447)
T 3dw8_B 343 FDKFECCWNGSDSVVMTGSYNNFFRMFDR 371 (447)
T ss_dssp GCCCCEEECTTSSEEEEECSTTEEEEEET
T ss_pred ccceEEEECCCCCEEEEeccCCEEEEEEc
Confidence 11345888887543 4 3677764
No 69
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.92 E-value=6.5e-23 Score=204.47 Aligned_cols=236 Identities=16% Similarity=0.268 Sum_probs=149.9
Q ss_pred ccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccc--c--cCCCeEEeccCCCCceeEecCCc
Q 012367 219 QAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS--N--AKEGKIKFGKKKSSHVPVVIPDE 293 (465)
Q Consensus 219 ~~H~~~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~ 293 (465)
.+|.+.|++++|+| ++.+|++|+.||.|++||+.+................ . .......+........ .
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v------~ 169 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKV------Q 169 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSE------E
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeE------E
Confidence 47999999999999 7789999999999999999987766554432211100 0 0011111111111111 1
Q ss_pred eeee-cCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCe-EeEEe----------------cCCCceE
Q 012367 294 VFQI-EESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQ-CLNVF----------------DHHNYVT 353 (465)
Q Consensus 294 ~~~~-~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~-~l~~~----------------~h~~~V~ 353 (465)
+|++ ....+..+.+|...|.+++|+|++ +|++++.|+.|++||++++. ++..+ .|...|.
T Consensus 170 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 249 (408)
T 4a11_B 170 LCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVN 249 (408)
T ss_dssp EEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEE
T ss_pred EEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCcee
Confidence 2333 245677888999999999999975 68999999999999998765 44443 4778999
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEeCCCCe------------------------------------------------EE
Q 012367 354 CVQFNPIDDNYFISGSIDGKVRIWGVCEKR------------------------------------------------VV 385 (465)
Q Consensus 354 ~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~------------------------------------------------~~ 385 (465)
+++|+| ++++|++++.|+.|++||+.+++ +.
T Consensus 250 ~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~ 328 (408)
T 4a11_B 250 GLCFTS-DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQIT 328 (408)
T ss_dssp EEEECT-TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEE
T ss_pred EEEEcC-CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCccee
Confidence 999999 99999999999999999987643 12
Q ss_pred ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCccceeeeecC
Q 012367 386 DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNYDNFRRFQTP 463 (465)
Q Consensus 386 ~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~d~~~~~~~p 463 (465)
.+.+|...|++++|+|++++|++|+.||.|++||+.+.+......... ............+++++....+++|..|
T Consensus 329 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 329 MLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETT--TKSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp EECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----------------------------------------
T ss_pred eeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceE--eccccccccceeecccCccCceeecCCc
Confidence 245688999999999999999999999999999999876543211111 1223355666778888888889999877
No 70
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.91 E-value=1.7e-22 Score=194.74 Aligned_cols=234 Identities=20% Similarity=0.321 Sum_probs=172.0
Q ss_pred hccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeee
Q 012367 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 297 (465)
Q Consensus 218 l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (465)
+.+|...|++|+|+|+|++||||+.||+|++|++.+++..................................... .
T Consensus 63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~----~ 138 (318)
T 4ggc_A 63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVR----V 138 (318)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETT----S
T ss_pred ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecC----C
Confidence 457899999999999999999999999999999999887666554333222211111111111111111111100 0
Q ss_pred cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEe-----EEecCCCceEEEEEccCCCCEE--EEEe
Q 012367 298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCL-----NVFDHHNYVTCVQFNPIDDNYF--ISGS 369 (465)
Q Consensus 298 ~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l-----~~~~h~~~V~~i~fsp~~~~~l--~sgs 369 (465)
....+..+.+|...+..+.+++++ +|++++.|++|++||+.+++.. ....+...|.+++++|.+.+.+ ++++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 218 (318)
T 4ggc_A 139 AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT 218 (318)
T ss_dssp SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECT
T ss_pred CceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecC
Confidence 234566788999999999999864 8999999999999999876532 2235788999999999666655 4566
Q ss_pred CCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEE--cCCcEEEEEecCCceeeeEeeecCcccccCCceeeEE
Q 012367 370 IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS--ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 447 (465)
Q Consensus 370 ~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs--~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~ 447 (465)
.++.|++||...........+...+..++|+|++..+++++ .||.|++||+.+++.. ..+.. |...|+++.
T Consensus 219 ~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~-~~l~g------H~~~V~~l~ 291 (318)
T 4ggc_A 219 SDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV-AELKG------HTSRVLSLT 291 (318)
T ss_dssp TTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE-EEECC------CSSCEEEEE
T ss_pred CCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEE-EEEcC------CCCCEEEEE
Confidence 78999999999998888888889999999999999888765 7999999999987653 23332 447899999
Q ss_pred EeecCCc------cc-eeeeec
Q 012367 448 GRISKNY------DN-FRRFQT 462 (465)
Q Consensus 448 f~p~gs~------d~-~~~~~~ 462 (465)
|+|+|.+ |+ +++|+.
T Consensus 292 ~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 292 MSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp ECTTSSCEEEEETTTEEEEECC
T ss_pred EcCCCCEEEEEecCCeEEEEEC
Confidence 9998644 54 677764
No 71
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.91 E-value=2.4e-23 Score=205.38 Aligned_cols=195 Identities=15% Similarity=0.242 Sum_probs=159.5
Q ss_pred hccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeee
Q 012367 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 297 (465)
Q Consensus 218 l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (465)
+..|.++|++++|+|++++||+|+.||.|++||+.+...
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~----------------------------------------- 42 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW----------------------------------------- 42 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-----------------------------------------
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-----------------------------------------
Confidence 456999999999999999999999999999999876421
Q ss_pred cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe---cCCCceEEEEEccCCCCEEEEEeCCCc
Q 012367 298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGK 373 (465)
Q Consensus 298 ~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~---~h~~~V~~i~fsp~~~~~l~sgs~Dg~ 373 (465)
..+..+.+|...|.+++|+|++ +|++++.|++|++||+.+++....+ .|...|.+++|+| ++++|++|+.|+.
T Consensus 43 --~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~ 119 (372)
T 1k8k_C 43 --VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRV 119 (372)
T ss_dssp --EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSS
T ss_pred --EeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCE
Confidence 1356677899999999999975 8999999999999999988755543 5888999999999 9999999999999
Q ss_pred EEEEeCCCCe----EEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCc-----------------eeeeEee
Q 012367 374 VRIWGVCEKR----VVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND-----------------LKLEKVD 431 (465)
Q Consensus 374 I~iwd~~~~~----~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~-----------------~~~~~~~ 431 (465)
|++||+..+. ... ...|...|++++|+|++++|++|+.||.|++||+.... .....+.
T Consensus 120 v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
T 1k8k_C 120 ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS 199 (372)
T ss_dssp EEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC
T ss_pred EEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC
Confidence 9999998765 222 46688999999999999999999999999999975221 1111222
Q ss_pred ecCcccccCCceeeEEEeecCCc------c-ceeeeec
Q 012367 432 FHDRKKTSGNKITGIQGRISKNY------D-NFRRFQT 462 (465)
Q Consensus 432 ~~~~~~~~~~~It~~~f~p~gs~------d-~~~~~~~ 462 (465)
.+...|+++.|+|++.+ | .+++|+.
T Consensus 200 ------~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 200 ------SSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 231 (372)
T ss_dssp ------CCSSCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred ------CCCCeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 23468999999998643 3 3677764
No 72
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.91 E-value=3.1e-24 Score=218.32 Aligned_cols=190 Identities=21% Similarity=0.221 Sum_probs=147.6
Q ss_pred CCCcchhhHHhhccccccccccccchhhhccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcc
Q 012367 190 EKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFG 268 (465)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~ 268 (465)
.......+++|...... ......+.+|.++|++|+|+| ++++|+|||.||+|+|||+.+.....
T Consensus 137 sGs~dg~i~lWd~~~~~-----~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~---------- 201 (435)
T 4e54_B 137 VGSKGGDIMLWNFGIKD-----KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRV---------- 201 (435)
T ss_dssp EEETTSCEEEECSSCCS-----CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEE----------
T ss_pred EEeCCCEEEEEECCCCC-----ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeE----------
Confidence 33455667777543221 122345679999999999998 68899999999999999997632211
Q ss_pred cccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-
Q 012367 269 SNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF- 346 (465)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~- 346 (465)
+.....+...+.+++|+|++ +|++|+.||+|++||+... .+..+
T Consensus 202 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~~~ 247 (435)
T 4e54_B 202 ---------------------------------FASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWNLR 247 (435)
T ss_dssp ---------------------------------EECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCCSB
T ss_pred ---------------------------------EeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEEEe
Confidence 11112344567889999875 8999999999999999754 44444
Q ss_pred cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeE----EecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367 347 DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV----VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG 422 (465)
Q Consensus 347 ~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~----~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~ 422 (465)
.|...|++++|+|....+|++|+.|+.|+|||+++... ....+|...|++++|+|+|++|++|+.||.|++||+.+
T Consensus 248 ~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~ 327 (435)
T 4e54_B 248 MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ 327 (435)
T ss_dssp CCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSS
T ss_pred cccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCC
Confidence 58999999999995556899999999999999987543 23467899999999999999999999999999999998
Q ss_pred Cceeee
Q 012367 423 NDLKLE 428 (465)
Q Consensus 423 ~~~~~~ 428 (465)
+.....
T Consensus 328 ~~~~~~ 333 (435)
T 4e54_B 328 WDCPLG 333 (435)
T ss_dssp SSSEEE
T ss_pred CccceE
Confidence 766543
No 73
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1e-23 Score=213.82 Aligned_cols=206 Identities=14% Similarity=0.254 Sum_probs=145.9
Q ss_pred chhhh-ccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEecCC---ceee--eeeecCCCCcccccCCCeEEeccCCCCce
Q 012367 214 TSQEI-QAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTS---VAAS--CKSFTDDGGFGSNAKEGKIKFGKKKSSHV 286 (465)
Q Consensus 214 ~~~~l-~~H~~~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (465)
..+.+ .+|.+.|++++|+| ++++||||+.||+|+|||+.+ .... .........+ ..+.+.......+
T Consensus 54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v------~~~~~~~~~~~l~ 127 (437)
T 3gre_A 54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTV------TQITMIPNFDAFA 127 (437)
T ss_dssp EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCE------EEEEECTTSSEEE
T ss_pred EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCE------EEEEEeCCCCEEE
Confidence 34556 78999999999999 999999999999999999876 2211 0111111111 1111111111111
Q ss_pred eEecCC--ceeee----cCCcceeeec------------cccceEEEE--ecCCC-EEEEEeCCCeEEEEeCCCCeEeEE
Q 012367 287 PVVIPD--EVFQI----EESPLQELHG------------HKGDVLDLA--WSNSN-YLLSCSMDKTVRMWQVGCNQCLNV 345 (465)
Q Consensus 287 ~~~~~~--~~~~~----~~~~~~~~~g------------h~~~V~~l~--~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~ 345 (465)
...... .+|++ ..+....+.+ +...+.++. +++++ +|++++.|++|++||+++++++..
T Consensus 128 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 207 (437)
T 3gre_A 128 VSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQI 207 (437)
T ss_dssp EEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEE
Confidence 111111 12322 1222222221 455666666 34554 899999999999999999999988
Q ss_pred ec---CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-c-ccCCCCeEEEEEee----CCCEEEEEEcCCcEE
Q 012367 346 FD---HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-W-ADVRDVISAICYIP----DGKGFIVGSITGTCH 416 (465)
Q Consensus 346 ~~---h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~-~~~~~~V~sv~~sp----dg~~l~sgs~dG~v~ 416 (465)
+. |...|++++|+| ++++|++|+.||.|++||+++++.+. + ..|...|++++|+| ++.+|++|+.||.|+
T Consensus 208 ~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~ 286 (437)
T 3gre_A 208 IENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLT 286 (437)
T ss_dssp EECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEE
T ss_pred EccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEE
Confidence 84 788999999999 99999999999999999999988776 3 27788999996665 678999999999999
Q ss_pred EEEecCCcee
Q 012367 417 FYKASGNDLK 426 (465)
Q Consensus 417 iwd~~~~~~~ 426 (465)
+||+.+++..
T Consensus 287 iwd~~~~~~~ 296 (437)
T 3gre_A 287 IWNFVKGHCQ 296 (437)
T ss_dssp EEETTTTEEE
T ss_pred EEEcCCCcEE
Confidence 9999987654
No 74
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.91 E-value=7.6e-23 Score=196.61 Aligned_cols=232 Identities=19% Similarity=0.310 Sum_probs=169.4
Q ss_pred cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCcee---eeeeecCCCCcccccCCCeEEeccCCCCceeEe
Q 012367 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAA---SCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 289 (465)
Q Consensus 213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (465)
.....+.+|.+.|++++|+|++++|++|+.||.|++|++..... ..........+......+...+.........
T Consensus 50 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~-- 127 (313)
T 3odt_A 50 WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAK-- 127 (313)
T ss_dssp EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEE--
T ss_pred EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEE--
Confidence 34466778999999999999999999999999999999876421 1111111111111111111111111111111
Q ss_pred cCCceeeecCCcceeeeccccceEEEEecC-C-CEEEEEeCCCeEEEEeCCCCeEeEEec--CCCceEEEEEccCCCCEE
Q 012367 290 IPDEVFQIEESPLQELHGHKGDVLDLAWSN-S-NYLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYF 365 (465)
Q Consensus 290 ~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~-~-~~l~s~s~DgtV~lWD~~~~~~l~~~~--h~~~V~~i~fsp~~~~~l 365 (465)
+|+ .......+.+|...|.+++|+| + +++++++.|+.|++|| ....+..+. |...|.+++|+| ++. +
T Consensus 128 ----~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~-~~~-~ 198 (313)
T 3odt_A 128 ----VWK-EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVD-DGH-F 198 (313)
T ss_dssp ----EEE-TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEE-TTE-E
T ss_pred ----EEc-CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcC-CCe-E
Confidence 222 4556778889999999999987 4 5999999999999999 455666663 888999999999 776 9
Q ss_pred EEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCcee
Q 012367 366 ISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 444 (465)
Q Consensus 366 ~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It 444 (465)
++++.|+.|++||+++++.+. +..|...|++++|+|++ .|++|+.||.|++||+.+++... .+..+ ...|+
T Consensus 199 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~-~~~~~------~~~i~ 270 (313)
T 3odt_A 199 ISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQ-VITLP------AISIW 270 (313)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEE-EEECS------SSCEE
T ss_pred EEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeE-EEecc------CceEE
Confidence 999999999999999887665 67799999999999999 68999999999999999876532 33323 35799
Q ss_pred eEEEeecCCc------cceeeeecC
Q 012367 445 GIQGRISKNY------DNFRRFQTP 463 (465)
Q Consensus 445 ~~~f~p~gs~------d~~~~~~~p 463 (465)
++.|+|++.+ ..+++|+..
T Consensus 271 ~~~~~~~~~~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 271 SVDCMSNGDIIVGSSDNLVRIFSQE 295 (313)
T ss_dssp EEEECTTSCEEEEETTSCEEEEESC
T ss_pred EEEEccCCCEEEEeCCCcEEEEeCC
Confidence 9999998643 346777643
No 75
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.91 E-value=1.2e-22 Score=199.08 Aligned_cols=238 Identities=11% Similarity=0.189 Sum_probs=169.6
Q ss_pred hhhccCCCcEEEEEECCCCC-EEEEEeC---CCcEEEEecCCceeeeeeec-CCCCcccccCCCeEEeccCC---CCcee
Q 012367 216 QEIQAHKGCIWTLKFSPDGR-YLASGGE---DGVVRIWHVTSVAASCKSFT-DDGGFGSNAKEGKIKFGKKK---SSHVP 287 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~-~LaSgs~---Dg~V~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~ 287 (465)
+.+.+|.+.|++++|+|++. ++++|+. ||.|+|||+.+......... ....+. .+.+.... .....
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~------~~~~~~~~~~~~~l~~ 85 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIK------CGTFGATSLQQRYLAT 85 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEE------EEECTTCCTTTCCEEE
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEE------EEEEcCCCCCCceEEE
Confidence 44578999999999999996 5556665 99999999998765433221 111111 11121111 11111
Q ss_pred EecCCc--eeeec-CC-cceeeeccccceEEEEe------cCC-CEEEEEeCCCeEEEEeCCCCe-EeEEec-C----CC
Q 012367 288 VVIPDE--VFQIE-ES-PLQELHGHKGDVLDLAW------SNS-NYLLSCSMDKTVRMWQVGCNQ-CLNVFD-H----HN 350 (465)
Q Consensus 288 ~~~~~~--~~~~~-~~-~~~~~~gh~~~V~~l~~------s~~-~~l~s~s~DgtV~lWD~~~~~-~l~~~~-h----~~ 350 (465)
....+. +|++. .. ++..+.+|...|.+++| +|+ .+|++++.|++|++||+.++. .+..+. | ..
T Consensus 86 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 165 (357)
T 3i2n_A 86 GDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKR 165 (357)
T ss_dssp EETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCC
T ss_pred ecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCC
Confidence 111222 23332 23 67888999999999965 555 499999999999999999886 677763 3 33
Q ss_pred ceEEEE----EccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEee---CCCEEEEEEcCCcEEEEEecCC
Q 012367 351 YVTCVQ----FNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP---DGKGFIVGSITGTCHFYKASGN 423 (465)
Q Consensus 351 ~V~~i~----fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~sp---dg~~l~sgs~dG~v~iwd~~~~ 423 (465)
.|++++ |+| +++++++|+.|+.|++||+++++......|...|.+++|+| ++..|++|+.||.|++||+.++
T Consensus 166 ~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 244 (357)
T 3i2n_A 166 DCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ 244 (357)
T ss_dssp CEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE
T ss_pred ceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC
Confidence 899998 677 99999999999999999999999888888999999999999 9999999999999999999865
Q ss_pred ceeeeEeeecCcccccCCceeeEEEeecCC-------cc-ceeeeec
Q 012367 424 DLKLEKVDFHDRKKTSGNKITGIQGRISKN-------YD-NFRRFQT 462 (465)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~It~~~f~p~gs-------~d-~~~~~~~ 462 (465)
+.... +... ....+...|+++.|+|++. .| .+++|+.
T Consensus 245 ~~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 289 (357)
T 3i2n_A 245 HPTKG-FASV-SEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKY 289 (357)
T ss_dssp ETTTE-EEEE-EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEE
T ss_pred Ccccc-eeee-ccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeec
Confidence 43221 1111 1123457899999999765 23 4777774
No 76
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.91 E-value=7.1e-23 Score=200.58 Aligned_cols=243 Identities=15% Similarity=0.213 Sum_probs=168.0
Q ss_pred cCCCcEEEEEECCC---CCEEEEEeCCCcEEEEecCCce-eeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC--c
Q 012367 220 AHKGCIWTLKFSPD---GRYLASGGEDGVVRIWHVTSVA-ASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD--E 293 (465)
Q Consensus 220 ~H~~~I~~l~fspd---g~~LaSgs~Dg~V~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 293 (465)
+|.++|++++|+|+ |.+|++|+.||.|++||+.+.. ...........+........+.+.............. .
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 142 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence 79999999999999 6999999999999999999876 3333322222221110000000001111111111111 1
Q ss_pred eeeecC--Ccceeeecccc----ceEEEE----ecCC-CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccC--
Q 012367 294 VFQIEE--SPLQELHGHKG----DVLDLA----WSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI-- 360 (465)
Q Consensus 294 ~~~~~~--~~~~~~~gh~~----~V~~l~----~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~-- 360 (465)
+|++.. .++..+..|.+ .|.+++ |+|+ .+|++++.|+.|++||++++++.....|...|.+++|+|.
T Consensus 143 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~ 222 (357)
T 3i2n_A 143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDI 222 (357)
T ss_dssp EECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSS
T ss_pred EEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCC
Confidence 233322 25666766655 899998 5665 4899999999999999999999888889999999999996
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEE------ecccCCCCeEEEEEeeCCC-EEEEEEcCCcEEEEEecCCceeee-----
Q 012367 361 DDNYFISGSIDGKVRIWGVCEKRVV------DWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLE----- 428 (465)
Q Consensus 361 ~~~~l~sgs~Dg~I~iwd~~~~~~~------~~~~~~~~V~sv~~spdg~-~l~sgs~dG~v~iwd~~~~~~~~~----- 428 (465)
++++|++|+.||.|++||++++... ...+|...|++++|+|+++ +|++|+.||.|++||+........
T Consensus 223 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g 302 (357)
T 3i2n_A 223 SMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEG 302 (357)
T ss_dssp SCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTS
T ss_pred CCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCC
Confidence 6899999999999999999876533 2338999999999999998 899999999999999986543210
Q ss_pred -------EeeecCcccccCCceeeEEEeecCCc-------c-ceeeeec
Q 012367 429 -------KVDFHDRKKTSGNKITGIQGRISKNY-------D-NFRRFQT 462 (465)
Q Consensus 429 -------~~~~~~~~~~~~~~It~~~f~p~gs~-------d-~~~~~~~ 462 (465)
..........+...|+++.|+|++.+ | .+++|+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~ 351 (357)
T 3i2n_A 303 IEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIV 351 (357)
T ss_dssp CCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred CccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEEC
Confidence 00000011224578999999998643 3 3667764
No 77
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.2e-23 Score=229.55 Aligned_cols=195 Identities=13% Similarity=0.127 Sum_probs=161.2
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec
Q 012367 219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 298 (465)
Q Consensus 219 ~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (465)
.+|.+.|++|+|+|++++||+|+.||+|+||+..+...
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~------------------------------------------ 51 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV------------------------------------------ 51 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE------------------------------------------
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE------------------------------------------
Confidence 48999999999999999999999999999999865322
Q ss_pred CCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEe
Q 012367 299 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 378 (465)
Q Consensus 299 ~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd 378 (465)
.. ...|...|.+++|+|+.+|++++.|++|+|||+.+++++..+.|...|++++|+| +++++++|+.||.|++||
T Consensus 52 ---~~-~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp-~g~~l~sgs~dg~V~lwd 126 (902)
T 2oaj_A 52 ---VI-KLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDA-SLDWMLIGLQNGSMIVYD 126 (902)
T ss_dssp ---EE-ECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCT-TCSEEEEEETTSCEEEEE
T ss_pred ---EE-EcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECC-CCCEEEEEcCCCcEEEEE
Confidence 11 1247789999999996689999999999999999999999999889999999999 999999999999999999
Q ss_pred CCCCeEE------------ecccCCCCeEEEEEeeC-CCEEEEEEcCCcEEEEEecCCceeeeEeeecC-----------
Q 012367 379 VCEKRVV------------DWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHD----------- 434 (465)
Q Consensus 379 ~~~~~~~------------~~~~~~~~V~sv~~spd-g~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~----------- 434 (465)
+.++.+. ...+|...|++++|+|+ +..|++|+.||.| +||+.+++.. ..+..+.
T Consensus 127 ~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~-~~~~~~~~~g~~~~~~~~ 204 (902)
T 2oaj_A 127 IDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIK-QSFIYELPPFAPGGDFSE 204 (902)
T ss_dssp TTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEE-EEECCCBCTTCCCSTTCC
T ss_pred CCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceE-EEEecccCCcCCCccccc
Confidence 9988764 23568899999999996 5789999999999 9999987543 2333320
Q ss_pred -cccccCCceeeEEEeecCCc------c-ceeeeec
Q 012367 435 -RKKTSGNKITGIQGRISKNY------D-NFRRFQT 462 (465)
Q Consensus 435 -~~~~~~~~It~~~f~p~gs~------d-~~~~~~~ 462 (465)
....+...|+++.|+|+|.+ | .+++|+.
T Consensus 205 ~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~ 240 (902)
T 2oaj_A 205 KTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDA 240 (902)
T ss_dssp CTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred ccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 00112367999999999753 4 4788875
No 78
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.91 E-value=1.1e-23 Score=206.78 Aligned_cols=201 Identities=21% Similarity=0.402 Sum_probs=161.1
Q ss_pred cchhhhccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367 213 YTSQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (465)
Q Consensus 213 ~~~~~l~~H~~~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (465)
...+.+.+|.+.|++++|+| ++++|++|+.||.|++||+.+......
T Consensus 106 ~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-------------------------------- 153 (366)
T 3k26_A 106 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI-------------------------------- 153 (366)
T ss_dssp CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEE--------------------------------
T ss_pred eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEE--------------------------------
Confidence 34566789999999999999 999999999999999999987533211
Q ss_pred CceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-----------------------
Q 012367 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD----------------------- 347 (465)
Q Consensus 292 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~----------------------- 347 (465)
+..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++.+..+.
T Consensus 154 ----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (366)
T 3k26_A 154 ----------FGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPD 223 (366)
T ss_dssp ----------ECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCS
T ss_pred ----------ecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCc
Confidence 11125799999999999975 99999999999999999876554332
Q ss_pred ------CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe---------------EEecccCCCCeEEEEEeeC--CC
Q 012367 348 ------HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR---------------VVDWADVRDVISAICYIPD--GK 404 (465)
Q Consensus 348 ------h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~---------------~~~~~~~~~~V~sv~~spd--g~ 404 (465)
|...|.+++|+ ++++++++.|+.|++||+.++. +..+..|...|++++|+|+ ++
T Consensus 224 ~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 300 (366)
T 3k26_A 224 FSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK 300 (366)
T ss_dssp EEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS
T ss_pred cccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc
Confidence 88899999997 5799999999999999997653 3346778899999999999 99
Q ss_pred EEEEEEcCCcEEEEEecCCceeee---EeeecCcccccCCceeeEEEeecCCc------c-ceeeeec
Q 012367 405 GFIVGSITGTCHFYKASGNDLKLE---KVDFHDRKKTSGNKITGIQGRISKNY------D-NFRRFQT 462 (465)
Q Consensus 405 ~l~sgs~dG~v~iwd~~~~~~~~~---~~~~~~~~~~~~~~It~~~f~p~gs~------d-~~~~~~~ 462 (465)
+|++|+.||.|++||+.+++.... .+..+. +...|+++.|+|++.+ | .+++|+.
T Consensus 301 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 301 MLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK----CGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp EEEEECTTSCEEEEECCSSSGGGCEEEEECCTT----CCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred EEEEEecCCcEEEEECCCCCCccccceEEcccc----cCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 999999999999999998764321 222221 2478999999998654 3 3667763
No 79
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.91 E-value=3.9e-23 Score=200.51 Aligned_cols=205 Identities=17% Similarity=0.283 Sum_probs=140.3
Q ss_pred chhhhccCCCcEEEEEECC--CCCEEEEEeCCCcEEEEecCCceee---------eeeecCCCCcccccCCCeEEeccC-
Q 012367 214 TSQEIQAHKGCIWTLKFSP--DGRYLASGGEDGVVRIWHVTSVAAS---------CKSFTDDGGFGSNAKEGKIKFGKK- 281 (465)
Q Consensus 214 ~~~~l~~H~~~I~~l~fsp--dg~~LaSgs~Dg~V~iWd~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~- 281 (465)
....+.+|.++|++++|+| ++++|++|+.||+|++||+.+.... ........ ....+.+...
T Consensus 49 ~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~~~~~~~ 122 (351)
T 3f3f_A 49 LSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKG------SLYSVKFAPAH 122 (351)
T ss_dssp EEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSS------CEEEEEECCGG
T ss_pred ecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCC------ceeEEEEcCCC
Confidence 3456789999999999999 6999999999999999999875321 11111000 0111222222
Q ss_pred -CCCceeEecCCc--eeeecCCcce-ee-------------eccccceEEEEecCC----CEEEEEeCCCeEEEEeCCCC
Q 012367 282 -KSSHVPVVIPDE--VFQIEESPLQ-EL-------------HGHKGDVLDLAWSNS----NYLLSCSMDKTVRMWQVGCN 340 (465)
Q Consensus 282 -~~~~~~~~~~~~--~~~~~~~~~~-~~-------------~gh~~~V~~l~~s~~----~~l~s~s~DgtV~lWD~~~~ 340 (465)
............ +|++...... .+ .+|...|.+++|+|+ .++++++.|+.+.+|+...+
T Consensus 123 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~ 202 (351)
T 3f3f_A 123 LGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG 202 (351)
T ss_dssp GCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS
T ss_pred CCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC
Confidence 111122222222 2332332211 00 146667777777763 36777777777766666665
Q ss_pred eE--eEEe-cCCCceEEEEEccCCC----CEEEEEeCCCcEEEEeCCCC-------------------------------
Q 012367 341 QC--LNVF-DHHNYVTCVQFNPIDD----NYFISGSIDGKVRIWGVCEK------------------------------- 382 (465)
Q Consensus 341 ~~--l~~~-~h~~~V~~i~fsp~~~----~~l~sgs~Dg~I~iwd~~~~------------------------------- 382 (465)
.. +..+ .|...|++++|+| ++ ++|++|+.||.|++||++++
T Consensus 203 ~~~~~~~~~~h~~~i~~~~~~p-~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (351)
T 3f3f_A 203 KLHVAAKLPGHKSLIRSISWAP-SIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSD 281 (351)
T ss_dssp CEEEEEECCCCCSCEEEEEECC-CSSCSSEEEEEEETTSCEEEEEEEECC------------------------------
T ss_pred ceeeeeecCCCCcceeEEEECC-CCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccc
Confidence 54 4444 4888999999999 76 89999999999999999763
Q ss_pred ---------------e-EEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 383 ---------------R-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 383 ---------------~-~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
+ +..+.+|...|++++|+|++++|++|+.||.|++|++..++.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 282 SNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp ---------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred cccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 2 233667999999999999999999999999999999997654
No 80
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.91 E-value=2.5e-23 Score=227.20 Aligned_cols=198 Identities=14% Similarity=0.282 Sum_probs=166.5
Q ss_pred cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (465)
Q Consensus 213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (465)
...+.+.+|.+.|++++|+|+|++||+|+.||.|+|||+.++.
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~------------------------------------- 46 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV------------------------------------- 46 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-------------------------------------
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc-------------------------------------
Confidence 3457788999999999999999999999999999999998643
Q ss_pred ceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeC
Q 012367 293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI 370 (465)
Q Consensus 293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~ 370 (465)
.+..+.+|.+.|.+++|+|++ +|++++.|++|++||+.+++.+..+. |...|++++|+| ++.+|++|+.
T Consensus 47 --------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 117 (814)
T 3mkq_A 47 --------EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSD 117 (814)
T ss_dssp --------EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEET
T ss_pred --------eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeC-CCCEEEEEcC
Confidence 355677899999999999975 89999999999999999999988885 899999999999 9999999999
Q ss_pred CCcEEEEeCCCC-eEE-ecccCCCCeEEEEEee-CCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEE
Q 012367 371 DGKVRIWGVCEK-RVV-DWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 447 (465)
Q Consensus 371 Dg~I~iwd~~~~-~~~-~~~~~~~~V~sv~~sp-dg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~ 447 (465)
||.|++||+.++ ... .+.+|...|.+++|+| ++..|++|+.||.|++||+.++......... +...+..+.
T Consensus 118 dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~------~~~~v~~~~ 191 (814)
T 3mkq_A 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG------QERGVNYVD 191 (814)
T ss_dssp TSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECC------CTTCCCEEE
T ss_pred CCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecC------CCCCEEEEE
Confidence 999999999876 443 4678999999999999 8999999999999999999876554332211 225688888
Q ss_pred Eee--cCC------cc-ceeeeec
Q 012367 448 GRI--SKN------YD-NFRRFQT 462 (465)
Q Consensus 448 f~p--~gs------~d-~~~~~~~ 462 (465)
|+| ++. .| .+++|+.
T Consensus 192 ~~~~~~~~~l~~~~~dg~i~~~d~ 215 (814)
T 3mkq_A 192 YYPLPDKPYMITASDDLTIKIWDY 215 (814)
T ss_dssp ECCSTTCCEEEEECTTSEEEEEET
T ss_pred EEECCCCCEEEEEeCCCEEEEEEC
Confidence 888 442 23 4666664
No 81
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.91 E-value=4.5e-23 Score=205.67 Aligned_cols=238 Identities=15% Similarity=0.263 Sum_probs=170.1
Q ss_pred chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCce------eeeeeecCCCCcccccCCCeEEeccC----C-
Q 012367 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA------ASCKSFTDDGGFGSNAKEGKIKFGKK----K- 282 (465)
Q Consensus 214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~----~- 282 (465)
..+.+.+|.++|++|+|+| ++||+|+.||+|+||++.+.. ...........+.. +.+... .
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~------~~~~~~~~~~g~ 79 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH------VDVLQAIERDAF 79 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEE------EEEEEEEETTTE
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEE------EEEecccccCCc
Confidence 4467889999999999999 799999999999999998866 33333322222111 111111 1
Q ss_pred --CCceeEecCC--ceeeecC-Cc-----ceeeecc-----ccceEEEEec----CCC-E-EEEEeCCCeEEEEeCCC--
Q 012367 283 --SSHVPVVIPD--EVFQIEE-SP-----LQELHGH-----KGDVLDLAWS----NSN-Y-LLSCSMDKTVRMWQVGC-- 339 (465)
Q Consensus 283 --~~~~~~~~~~--~~~~~~~-~~-----~~~~~gh-----~~~V~~l~~s----~~~-~-l~s~s~DgtV~lWD~~~-- 339 (465)
...+.....+ .+|.+.. .. +..+.+| ...|.+++|+ |++ + |++++.|+.|++||+.+
T Consensus 80 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 159 (397)
T 1sq9_A 80 ELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA 159 (397)
T ss_dssp EEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSS
T ss_pred cccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccc
Confidence 1111111112 2344433 33 6778888 5999999999 865 7 99999999999999988
Q ss_pred ----CeEeE-----Ee--------cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-ccc---C---CCCeE
Q 012367 340 ----NQCLN-----VF--------DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WAD---V---RDVIS 395 (465)
Q Consensus 340 ----~~~l~-----~~--------~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~---~---~~~V~ 395 (465)
+.++. .+ .|...|++++|+| ++ +|++|+.|+.|++||+++++.+. +.. | ...|.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~ 237 (397)
T 1sq9_A 160 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR 237 (397)
T ss_dssp SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEE
T ss_pred cccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccc
Confidence 65554 54 2788999999999 88 99999999999999999887765 555 7 89999
Q ss_pred EEEEeeCCCEEEEEEcC---CcEEEEEecCCceeeeEeeecC-------cccccCCceeeEEEeecCCc------c-cee
Q 012367 396 AICYIPDGKGFIVGSIT---GTCHFYKASGNDLKLEKVDFHD-------RKKTSGNKITGIQGRISKNY------D-NFR 458 (465)
Q Consensus 396 sv~~spdg~~l~sgs~d---G~v~iwd~~~~~~~~~~~~~~~-------~~~~~~~~It~~~f~p~gs~------d-~~~ 458 (465)
+++|+|++++|++++.| |.|++||+.+++... .+.... ....+...|+++.|+|++.+ | .++
T Consensus 238 ~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 316 (397)
T 1sq9_A 238 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG-SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLR 316 (397)
T ss_dssp EEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEE-EECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred eEEECCCCCEEEEEecCCCCceEEEEECCCCcccc-eeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEE
Confidence 99999999999999999 999999998876533 222200 00014478999999998644 3 367
Q ss_pred eeec
Q 012367 459 RFQT 462 (465)
Q Consensus 459 ~~~~ 462 (465)
+|+.
T Consensus 317 iwd~ 320 (397)
T 1sq9_A 317 FWDV 320 (397)
T ss_dssp EEET
T ss_pred EEEc
Confidence 7765
No 82
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.6e-23 Score=208.48 Aligned_cols=209 Identities=13% Similarity=0.266 Sum_probs=156.4
Q ss_pred chhhhccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEecCCce------eeeeeecCCCCcccccCCCeEEeccCCCCce
Q 012367 214 TSQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVA------ASCKSFTDDGGFGSNAKEGKIKFGKKKSSHV 286 (465)
Q Consensus 214 ~~~~l~~H~~~I~~l~fspd-g~~LaSgs~Dg~V~iWd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (465)
....+.+|.+.|++++|+|+ +++|++|+.||+|++||+.+.. ......... ........+.+........
T Consensus 105 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l 181 (416)
T 2pm9_A 105 SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSM---SSVDEVISLAWNQSLAHVF 181 (416)
T ss_dssp EEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSC---CSSCCCCEEEECSSCTTEE
T ss_pred chhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccccc---CCCCCeeEEEeCCCCCcEE
Confidence 44667899999999999998 8999999999999999998765 211110000 0111122222222212222
Q ss_pred eEec-CC--ceeeec-CCcceeeecc------ccceEEEEecCCC--EEEEEeCCC---eEEEEeCCCC-eEeEEec--C
Q 012367 287 PVVI-PD--EVFQIE-ESPLQELHGH------KGDVLDLAWSNSN--YLLSCSMDK---TVRMWQVGCN-QCLNVFD--H 348 (465)
Q Consensus 287 ~~~~-~~--~~~~~~-~~~~~~~~gh------~~~V~~l~~s~~~--~l~s~s~Dg---tV~lWD~~~~-~~l~~~~--h 348 (465)
.... .. .+|++. .+++..+..| ...|.+++|+|++ ++++++.|+ .|++||++++ .++..+. |
T Consensus 182 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~ 261 (416)
T 2pm9_A 182 ASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGH 261 (416)
T ss_dssp EEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCC
T ss_pred EEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCc
Confidence 2211 11 123332 3344555555 7899999999974 899999999 9999999986 5666664 8
Q ss_pred CCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCC-CEEEEEEcCCcEEEEEecCCce
Q 012367 349 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 349 ~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg-~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
...|++++|+|.++++|++++.|+.|++||+.+++.+. +..|...|++++|+|++ .+|++++.||.|++|++.+...
T Consensus 262 ~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 262 QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp SSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence 89999999999788999999999999999999887665 67899999999999999 8999999999999999987654
No 83
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.91 E-value=4.9e-23 Score=202.23 Aligned_cols=196 Identities=18% Similarity=0.344 Sum_probs=157.4
Q ss_pred cCCCcEEEEEECCC----CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367 220 AHKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (465)
Q Consensus 220 ~H~~~I~~l~fspd----g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (465)
.|.+.|++++|+|+ |++|++|+.||.|++||+.+.
T Consensus 67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~----------------------------------------- 105 (366)
T 3k26_A 67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM----------------------------------------- 105 (366)
T ss_dssp CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC-----------------------------------------
T ss_pred CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc-----------------------------------------
Confidence 47789999999999 679999999999999999864
Q ss_pred eecCCcceeeeccccceEEEEecC-C-CEEEEEeCCCeEEEEeCCCCeEeEEe----cCCCceEEEEEccCCCCEEEEEe
Q 012367 296 QIEESPLQELHGHKGDVLDLAWSN-S-NYLLSCSMDKTVRMWQVGCNQCLNVF----DHHNYVTCVQFNPIDDNYFISGS 369 (465)
Q Consensus 296 ~~~~~~~~~~~gh~~~V~~l~~s~-~-~~l~s~s~DgtV~lWD~~~~~~l~~~----~h~~~V~~i~fsp~~~~~l~sgs 369 (465)
+.+..+.+|...|.+++|+| + .+|++++.|++|++||+.+++.+..+ .|...|.+++|+| ++++|++++
T Consensus 106 ----~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 180 (366)
T 3k26_A 106 ----QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCG 180 (366)
T ss_dssp ----CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT-TSSEEEEEE
T ss_pred ----eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC-CCCEEEEec
Confidence 23556678999999999998 5 48999999999999999999999987 5889999999999 999999999
Q ss_pred CCCcEEEEeCCCCeEEe-----------------------------cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEe
Q 012367 370 IDGKVRIWGVCEKRVVD-----------------------------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKA 420 (465)
Q Consensus 370 ~Dg~I~iwd~~~~~~~~-----------------------------~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~ 420 (465)
.|+.|++||+++++... ...|...|.+++|+ +++|++++.||.|++||+
T Consensus 181 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~ 258 (366)
T 3k26_A 181 MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKP 258 (366)
T ss_dssp TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEE
T ss_pred CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeC
Confidence 99999999998865432 12288999999999 779999999999999999
Q ss_pred cCCceeeeEe-------eecCcccccCCceeeEEEeec--CCc------c-ceeeeecC
Q 012367 421 SGNDLKLEKV-------DFHDRKKTSGNKITGIQGRIS--KNY------D-NFRRFQTP 463 (465)
Q Consensus 421 ~~~~~~~~~~-------~~~~~~~~~~~~It~~~f~p~--gs~------d-~~~~~~~p 463 (465)
.+........ ........+...|+.+.|+|+ +.+ | .+++|+..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~ 317 (366)
T 3k26_A 259 GKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLE 317 (366)
T ss_dssp SSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECC
T ss_pred CCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECC
Confidence 8765411100 000011123457888888888 443 3 36777653
No 84
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.91 E-value=3.1e-23 Score=202.38 Aligned_cols=236 Identities=14% Similarity=0.124 Sum_probs=172.9
Q ss_pred hhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCce----eeeeeecCCCCcccccCCCeEEeccCCC-CceeEecC
Q 012367 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA----ASCKSFTDDGGFGSNAKEGKIKFGKKKS-SHVPVVIP 291 (465)
Q Consensus 217 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 291 (465)
...+|.+.|++++|+|++++||+|+.||.|+||++.+.. ..... .....+. .+.+..... ........
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~-~~~~~v~------~~~~~~~~~~~l~~~~~d 78 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL-RYKHPLL------CCNFIDNTDLQIYVGTVQ 78 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE-ECSSCEE------EEEEEESSSEEEEEEETT
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee-ecCCceE------EEEECCCCCcEEEEEcCC
Confidence 345899999999999999999999999999999998765 22221 1111111 111111111 11111112
Q ss_pred C--ceeee-cCCcceeeec--cccceEEEEecCCCEEEEEeCCCeEEEEeCCC---------CeEeEEecCCCceEEEEE
Q 012367 292 D--EVFQI-EESPLQELHG--HKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC---------NQCLNVFDHHNYVTCVQF 357 (465)
Q Consensus 292 ~--~~~~~-~~~~~~~~~g--h~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~---------~~~l~~~~h~~~V~~i~f 357 (465)
+ .+|++ .......+.+ |...|.+++|+|+++|++++.|++|++||+.+ ++++..+.|...|.+++|
T Consensus 79 g~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 158 (342)
T 1yfq_A 79 GEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT 158 (342)
T ss_dssp SCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred CeEEEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEe
Confidence 2 23444 5555677888 99999999999966999999999999999988 777777889999999999
Q ss_pred ccCCCCEEEEEeCCCcEEEEeCCC-CeE---EecccCCCCeEEEEEee-CCCEEEEEEcCCcEEEEEecCC-----ceee
Q 012367 358 NPIDDNYFISGSIDGKVRIWGVCE-KRV---VDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGN-----DLKL 427 (465)
Q Consensus 358 sp~~~~~l~sgs~Dg~I~iwd~~~-~~~---~~~~~~~~~V~sv~~sp-dg~~l~sgs~dG~v~iwd~~~~-----~~~~ 427 (465)
+| ++ +++++.|+.|++||+++ +.. .....+...|.+++|+| +++++++|+.||.|++|++... ....
T Consensus 159 ~~-~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~ 235 (342)
T 1yfq_A 159 NS-SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR 235 (342)
T ss_dssp CS-SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred cC-Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccc
Confidence 98 55 99999999999999988 432 23556888999999999 9999999999999999999876 1223
Q ss_pred eEeeecCcc---cccCCceeeEEEeecCCc------c-ceeeeec
Q 012367 428 EKVDFHDRK---KTSGNKITGIQGRISKNY------D-NFRRFQT 462 (465)
Q Consensus 428 ~~~~~~~~~---~~~~~~It~~~f~p~gs~------d-~~~~~~~ 462 (465)
..+..+... ..+...|+++.|+|++.+ | .+++|+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~ 280 (342)
T 1yfq_A 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL 280 (342)
T ss_dssp EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred eeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC
Confidence 333333211 012358999999998654 3 4677764
No 85
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.91 E-value=1.1e-22 Score=206.62 Aligned_cols=211 Identities=20% Similarity=0.349 Sum_probs=163.8
Q ss_pred ccchhhhccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec
Q 012367 212 LYTSQEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 290 (465)
Q Consensus 212 ~~~~~~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (465)
......+.+|.+.|++|+|+|++. +|++|+.||+|++|++.........
T Consensus 171 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~------------------------------ 220 (430)
T 2xyi_A 171 CQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV------------------------------ 220 (430)
T ss_dssp CCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGE------------------------------
T ss_pred CCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCce------------------------------
Confidence 344567789999999999999998 9999999999999999863211000
Q ss_pred CCceeeecCCcceeeeccccceEEEEecC-C-CEEEEEeCCCeEEEEeCCCC---eEeEEe-cCCCceEEEEEccCCCCE
Q 012367 291 PDEVFQIEESPLQELHGHKGDVLDLAWSN-S-NYLLSCSMDKTVRMWQVGCN---QCLNVF-DHHNYVTCVQFNPIDDNY 364 (465)
Q Consensus 291 ~~~~~~~~~~~~~~~~gh~~~V~~l~~s~-~-~~l~s~s~DgtV~lWD~~~~---~~l~~~-~h~~~V~~i~fsp~~~~~ 364 (465)
..+...+.+|...|.+++|+| + .+|++++.|+.|++||++++ .++..+ .|...|++++|+|....+
T Consensus 221 --------~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~ 292 (430)
T 2xyi_A 221 --------IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI 292 (430)
T ss_dssp --------EECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTE
T ss_pred --------eccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCE
Confidence 023456678999999999998 3 48999999999999999987 466666 688999999999933447
Q ss_pred EEEEeCCCcEEEEeCCC-Ce-EEecccCCCCeEEEEEeeCCC-EEEEEEcCCcEEEEEecCCceee----------eEee
Q 012367 365 FISGSIDGKVRIWGVCE-KR-VVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKL----------EKVD 431 (465)
Q Consensus 365 l~sgs~Dg~I~iwd~~~-~~-~~~~~~~~~~V~sv~~spdg~-~l~sgs~dG~v~iwd~~~~~~~~----------~~~~ 431 (465)
|++|+.||.|++||+++ +. +..+..|...|++++|+|+++ +|++++.||.|++||+....... ..+.
T Consensus 293 l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 372 (430)
T 2xyi_A 293 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF 372 (430)
T ss_dssp EEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEE
T ss_pred EEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEE
Confidence 99999999999999987 33 445778999999999999995 69999999999999998732110 1111
Q ss_pred ecCcccccCCceeeEEEeecCC-------ccc-eeeeecC
Q 012367 432 FHDRKKTSGNKITGIQGRISKN-------YDN-FRRFQTP 463 (465)
Q Consensus 432 ~~~~~~~~~~~It~~~f~p~gs-------~d~-~~~~~~p 463 (465)
.+ ..+...|+++.|+|++. .|+ +++|..+
T Consensus 373 ~~---~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 373 IH---GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp EC---CCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred Ec---CCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 11 12446899999999876 243 6777653
No 86
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.91 E-value=5e-23 Score=209.14 Aligned_cols=204 Identities=21% Similarity=0.330 Sum_probs=163.0
Q ss_pred hccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367 218 IQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (465)
Q Consensus 218 l~~H~~~I~~l~fspd-g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (465)
+.+|.+.|++++|+|+ +.+||+|+.||.|+||++........ . .
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-------------------------------~----~ 168 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-------------------------------P----S 168 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-------------------------------T----T
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-------------------------------c----c
Confidence 4589999999999997 67999999999999999975211000 0 0
Q ss_pred ecCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeE-------eEEe-cCCCceEEEEEccCCCCEEE
Q 012367 297 IEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQC-------LNVF-DHHNYVTCVQFNPIDDNYFI 366 (465)
Q Consensus 297 ~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~-------l~~~-~h~~~V~~i~fsp~~~~~l~ 366 (465)
....++..+.+|...|.+++|+|++ +|++|+.||+|++||+.++.. ...+ .|...|.+++|+|.++.+|+
T Consensus 169 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~ 248 (430)
T 2xyi_A 169 GECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFG 248 (430)
T ss_dssp CCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEE
T ss_pred ccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEE
Confidence 0124567788999999999999863 899999999999999987321 3444 58889999999997789999
Q ss_pred EEeCCCcEEEEeCCCC----eEEecccCCCCeEEEEEeeCCC-EEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCC
Q 012367 367 SGSIDGKVRIWGVCEK----RVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN 441 (465)
Q Consensus 367 sgs~Dg~I~iwd~~~~----~~~~~~~~~~~V~sv~~spdg~-~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 441 (465)
+++.|+.|++||++++ .+..+..|...|++++|+|++. .|++|+.||.|++||++.....+..+..| ..
T Consensus 249 s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h------~~ 322 (430)
T 2xyi_A 249 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH------KD 322 (430)
T ss_dssp EEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECC------SS
T ss_pred EEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecC------CC
Confidence 9999999999999876 2334668999999999999997 68899999999999999865544444433 36
Q ss_pred ceeeEEEeecCCc--------cceeeeec
Q 012367 442 KITGIQGRISKNY--------DNFRRFQT 462 (465)
Q Consensus 442 ~It~~~f~p~gs~--------d~~~~~~~ 462 (465)
.|++++|+|++.+ ..+++|+.
T Consensus 323 ~v~~i~~sp~~~~~l~s~~~d~~i~iwd~ 351 (430)
T 2xyi_A 323 EIFQVQWSPHNETILASSGTDRRLHVWDL 351 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCCEEEEG
T ss_pred CEEEEEECCCCCCEEEEEeCCCcEEEEeC
Confidence 8999999998743 34777764
No 87
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2e-22 Score=202.12 Aligned_cols=231 Identities=11% Similarity=0.215 Sum_probs=168.3
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCC----ceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec-CCc-
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS----VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI-PDE- 293 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~- 293 (465)
.|.+.|++++|+|++++||+|+.||.|++|++.+ ............. ...+.+............ ...
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~------v~~~~~~~~~~~~l~s~~~dg~v 138 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSS------VKTVKFNAKQDNVLASGGNNGEI 138 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSC------CCEEEECSSSTTBEEEECSSSCE
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccc------eEEEEEcCCCCCEEEEEcCCCeE
Confidence 6899999999999999999999999999999987 2222222222111 112222222111111111 111
Q ss_pred -eeeecCC----------cceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEecC-------CCceE
Q 012367 294 -VFQIEES----------PLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFDH-------HNYVT 353 (465)
Q Consensus 294 -~~~~~~~----------~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~~h-------~~~V~ 353 (465)
+|++... ....+.+|...|.+++|+|+ .+|++++.|++|++||+.+++++..+.. ...|.
T Consensus 139 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 218 (416)
T 2pm9_A 139 FIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLS 218 (416)
T ss_dssp EBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEE
T ss_pred EEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceE
Confidence 2333221 12234679999999999997 4899999999999999999999988853 67899
Q ss_pred EEEEccCCCCEEEEEeCCC---cEEEEeCCCC-eEEe-cc-cCCCCeEEEEEee-CCCEEEEEEcCCcEEEEEecCCcee
Q 012367 354 CVQFNPIDDNYFISGSIDG---KVRIWGVCEK-RVVD-WA-DVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLK 426 (465)
Q Consensus 354 ~i~fsp~~~~~l~sgs~Dg---~I~iwd~~~~-~~~~-~~-~~~~~V~sv~~sp-dg~~l~sgs~dG~v~iwd~~~~~~~ 426 (465)
+++|+|.+..++++++.|+ .|++||++++ .... +. +|...|++++|+| ++++|++++.||.|++||+.+++..
T Consensus 219 ~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~ 298 (416)
T 2pm9_A 219 VVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQL 298 (416)
T ss_dssp EEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEE
T ss_pred EEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccc
Confidence 9999993347999999998 9999999985 3433 55 7999999999999 9999999999999999999887543
Q ss_pred eeEeeecCcccccCCceeeEEEeecC-------Ccc-ceeeeecC
Q 012367 427 LEKVDFHDRKKTSGNKITGIQGRISK-------NYD-NFRRFQTP 463 (465)
Q Consensus 427 ~~~~~~~~~~~~~~~~It~~~f~p~g-------s~d-~~~~~~~p 463 (465)
..+.. +...|+++.|+|++ +.| .+++|+..
T Consensus 299 -~~~~~------~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~ 336 (416)
T 2pm9_A 299 -SQFPA------RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQ 336 (416)
T ss_dssp -EEEEC------SSSCCCCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred -eeecC------CCCceEEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence 23332 33679999999976 234 36777753
No 88
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.7e-22 Score=199.88 Aligned_cols=235 Identities=17% Similarity=0.258 Sum_probs=168.2
Q ss_pred ccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEec----CCcee------eeeeecCCCCcc----cccCCCeEEeccCCC
Q 012367 219 QAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHV----TSVAA------SCKSFTDDGGFG----SNAKEGKIKFGKKKS 283 (465)
Q Consensus 219 ~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~----~~~~~------~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 283 (465)
..|.++|++++|+|+|+ +||+|+.||.|++|++ .++.. ............ .......+.+.....
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 35679999999999999 9999999999999999 77662 222222111100 000111122222211
Q ss_pred CceeEecCC--ceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe--------------
Q 012367 284 SHVPVVIPD--EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-------------- 346 (465)
Q Consensus 284 ~~~~~~~~~--~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-------------- 346 (465)
..+.....+ .+|+.....+..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++.+..+
T Consensus 122 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 201 (425)
T 1r5m_A 122 SIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAEN 201 (425)
T ss_dssp EEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----------
T ss_pred EEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeecc
Confidence 112111222 23444567778888999999999999975 8999999999999999877655432
Q ss_pred -------------------------------------------cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe
Q 012367 347 -------------------------------------------DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR 383 (465)
Q Consensus 347 -------------------------------------------~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~ 383 (465)
.|...|.+++|+| ++++|++++.|+.|++||+.+++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~ 280 (425)
T 1r5m_A 202 HSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKLLLSASDDGTLRIWHGGNGN 280 (425)
T ss_dssp ----CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEECSSSBS
T ss_pred ccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCc
Confidence 2567899999999 99999999999999999999876
Q ss_pred EEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc------c-
Q 012367 384 VVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY------D- 455 (465)
Q Consensus 384 ~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~------d- 455 (465)
.+. +..|...|.+++|+|++ .+++++.||.|++||+.+++... .+.. +...|+++.|+|++.+ |
T Consensus 281 ~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~-~~~~------~~~~i~~~~~s~~~~~l~~~~~dg 352 (425)
T 1r5m_A 281 SQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLA-LSIV------DGVPIFAGRISQDGQKYAVAFMDG 352 (425)
T ss_dssp CSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEE-EEEC------TTCCEEEEEECTTSSEEEEEETTS
T ss_pred cceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeE-eccc------CCccEEEEEEcCCCCEEEEEECCC
Confidence 554 66799999999999999 99999999999999998876432 2322 2367999999998654 3
Q ss_pred ceeeeec
Q 012367 456 NFRRFQT 462 (465)
Q Consensus 456 ~~~~~~~ 462 (465)
.+++|+.
T Consensus 353 ~i~i~~~ 359 (425)
T 1r5m_A 353 QVNVYDL 359 (425)
T ss_dssp CEEEEEC
T ss_pred eEEEEEC
Confidence 3666654
No 89
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.90 E-value=1.3e-23 Score=211.18 Aligned_cols=207 Identities=14% Similarity=0.140 Sum_probs=144.4
Q ss_pred chhhHHhhccccccccccccchhhhccCCCcEEEEEECC--------CCCEEEEEeCCCcEEEEecCCceeeeeeecCCC
Q 012367 194 ANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSP--------DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG 265 (465)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--------dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~ 265 (465)
...+++|..... ..........+.||++.|++|+|+| +|++|||||.|++|+|||+.+..
T Consensus 110 d~~v~lw~~~~~--~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~---------- 177 (393)
T 4gq1_A 110 DNTVRLIITKNE--TIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG---------- 177 (393)
T ss_dssp TSCEEEEEEETT--EEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE----------
T ss_pred CCcEEEEECCCC--ccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc----------
Confidence 445555543322 1122234467889999999999998 88999999999999999987632
Q ss_pred CcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEe
Q 012367 266 GFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCL 343 (465)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l 343 (465)
++..+.+|...|.+++|+|++ +|++++.|++|++||+.+++..
T Consensus 178 -----------------------------------~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~ 222 (393)
T 4gq1_A 178 -----------------------------------PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSA 222 (393)
T ss_dssp -----------------------------------EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC--
T ss_pred -----------------------------------eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccc
Confidence 344556788999999999974 7999999999999999887643
Q ss_pred EEe--------------------------cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEE
Q 012367 344 NVF--------------------------DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISA 396 (465)
Q Consensus 344 ~~~--------------------------~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~s 396 (465)
... .|...|.++.|.+.++..+++++.|+++++||+.+++... +..|...+..
T Consensus 223 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~ 302 (393)
T 4gq1_A 223 EENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGP 302 (393)
T ss_dssp --------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------------------
T ss_pred ccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCcccc
Confidence 321 3667889999985599999999999999999998765432 2233333322
Q ss_pred ------------------EEEee--CCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc
Q 012367 397 ------------------ICYIP--DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY 454 (465)
Q Consensus 397 ------------------v~~sp--dg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~ 454 (465)
..|+| ++.++++|+.||+|++||+.++........ +...|.++.|+|+|.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~-------~~~~V~svafspdG~~ 373 (393)
T 4gq1_A 303 KNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ-------LGMPIVDFCWHQDGSH 373 (393)
T ss_dssp -CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEE-------CSSCEEEEEECTTSSE
T ss_pred EEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecC-------CCCcEEEEEEcCCCCE
Confidence 33444 344677788899999999998765433221 2357999999999876
No 90
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.3e-23 Score=203.74 Aligned_cols=221 Identities=10% Similarity=0.087 Sum_probs=151.1
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc-e--eeecCCc
Q 012367 225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE-V--FQIEESP 301 (465)
Q Consensus 225 I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~ 301 (465)
.....+.+++.+||||+.||+|++||+.++.......... +........ .+.........++.... + +......
T Consensus 39 ~~~~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~--v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~ 115 (343)
T 3lrv_A 39 ELNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPN--PRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTNK 115 (343)
T ss_dssp EECSSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEEEEC--CCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTCC
T ss_pred hhhhhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEecCC--ceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCcc
Confidence 3344556788899999999999999999877655443111 111111111 11112222222222221 1 2222222
Q ss_pred -ceeee-ccccceEEEEecC--CC-EEEEEeCCCeEEEEeCCCCeEeEEe--cCCCceEEEEEccCCCCEEEEEeCCCcE
Q 012367 302 -LQELH-GHKGDVLDLAWSN--SN-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKV 374 (465)
Q Consensus 302 -~~~~~-gh~~~V~~l~~s~--~~-~l~s~s~DgtV~lWD~~~~~~l~~~--~h~~~V~~i~fsp~~~~~l~sgs~Dg~I 374 (465)
+..+. +|.+.|.+++|+| ++ ++++++.|++|++||+.+++++..+ .|...|++++|+| ++.+|++|+.||.|
T Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i 194 (343)
T 3lrv_A 116 VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGIL 194 (343)
T ss_dssp EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCE
T ss_pred eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEE
Confidence 33333 6778999999999 65 8999999999999999999987776 3556899999999 99999999999999
Q ss_pred EEEeCCCCeEE--eccc-CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCce--eeEEEe
Q 012367 375 RIWGVCEKRVV--DWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI--TGIQGR 449 (465)
Q Consensus 375 ~iwd~~~~~~~--~~~~-~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~I--t~~~f~ 449 (465)
+|||+++++.. .+.. |...|++++|+|+|.+|++++ ++.|++||++..+.......+.. +...+ ..+.|+
T Consensus 195 ~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 269 (343)
T 3lrv_A 195 DVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTI----PEFKTGTVTYDID 269 (343)
T ss_dssp EEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC---------CCEEEEEC
T ss_pred EEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccccc----ccccccceEEEEC
Confidence 99999988765 5666 999999999999999999999 55999999998754321100000 11222 458888
Q ss_pred ecCCc
Q 012367 450 ISKNY 454 (465)
Q Consensus 450 p~gs~ 454 (465)
|+|.+
T Consensus 270 ~~g~~ 274 (343)
T 3lrv_A 270 DSGKN 274 (343)
T ss_dssp TTSSE
T ss_pred CCCCE
Confidence 87654
No 91
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.90 E-value=8.9e-23 Score=203.16 Aligned_cols=233 Identities=13% Similarity=0.118 Sum_probs=163.7
Q ss_pred ccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC--cee
Q 012367 219 QAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD--EVF 295 (465)
Q Consensus 219 ~~H~~~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 295 (465)
.+|.+.|++++|+| ++++|++|+.||.|++||+.+.... ......... .....+.+.............. .+|
T Consensus 115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~i~ 190 (383)
T 3ei3_B 115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQ-VFAKTDSWD---YWYCCVDVSVSRQMLATGDSTGRLLLL 190 (383)
T ss_dssp CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEE-EEECCCCSS---CCEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceE-EEeccCCCC---CCeEEEEECCCCCEEEEECCCCCEEEE
Confidence 47999999999999 7899999999999999999863322 222111100 0011111221111111111111 235
Q ss_pred eecCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCC----CeEeEEecCCCceEEEEEccCCCCEEEEEe
Q 012367 296 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGC----NQCLNVFDHHNYVTCVQFNPIDDNYFISGS 369 (465)
Q Consensus 296 ~~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~----~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs 369 (465)
++...++..+.+|...|.+++|+|++ +|++++.|++|++||+++ +.++..+.|...|++++|+|.++++|++++
T Consensus 191 d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~ 270 (383)
T 3ei3_B 191 GLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTD 270 (383)
T ss_dssp ETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEE
T ss_pred ECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEc
Confidence 55667888899999999999999975 899999999999999988 778888899999999999998889999999
Q ss_pred CCCcEEEEeCCCCeEEe-ccc-------CC----------CCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEee
Q 012367 370 IDGKVRIWGVCEKRVVD-WAD-------VR----------DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD 431 (465)
Q Consensus 370 ~Dg~I~iwd~~~~~~~~-~~~-------~~----------~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~ 431 (465)
.|+.|++||++++.... +.. |. ..+..++|+|+|++ +|+.||.|++||+.+++... .+.
T Consensus 271 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~-~l~ 347 (383)
T 3ei3_B 271 QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVH-QLR 347 (383)
T ss_dssp SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEE-EEC
T ss_pred CCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceee-eec
Confidence 99999999998765322 222 22 23444666666666 67789999999998876632 332
Q ss_pred ecCcccccCCceeeEEEeecCCc------cceeeeec
Q 012367 432 FHDRKKTSGNKITGIQGRISKNY------DNFRRFQT 462 (465)
Q Consensus 432 ~~~~~~~~~~~It~~~f~p~gs~------d~~~~~~~ 462 (465)
.+. +...+..+.|+|++.+ ..+++|+.
T Consensus 348 ~~~----~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~ 380 (383)
T 3ei3_B 348 DPN----AAGIISLNKFSPTGDVLASGMGFNILIWNR 380 (383)
T ss_dssp BTT----BCSCCCEEEECTTSSEEEEEETTEEEEEEC
T ss_pred CCC----CCceEEEEEEecCccEEEEecCCcEEEEec
Confidence 221 2345666688887544 35777764
No 92
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.90 E-value=9.3e-22 Score=200.90 Aligned_cols=238 Identities=19% Similarity=0.299 Sum_probs=171.7
Q ss_pred ccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccccc----CCCeEEeccCCCCcee
Q 012367 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNA----KEGKIKFGKKKSSHVP 287 (465)
Q Consensus 212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 287 (465)
......+.+|.+.|++++|+|++ +|++|+.||+|++||+.++............+.... ......+.........
T Consensus 152 ~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~ 230 (464)
T 3v7d_B 152 KKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230 (464)
T ss_dssp TEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEE
T ss_pred CcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEE
Confidence 34556778999999999999988 999999999999999998876655443333221111 1111111111112222
Q ss_pred EecCCceeee------------------cCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe-cC
Q 012367 288 VVIPDEVFQI------------------EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DH 348 (465)
Q Consensus 288 ~~~~~~~~~~------------------~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h 348 (465)
++........ ....+..+.+|...|.++... ++++++++.|++|++||+.+++++..+ .|
T Consensus 231 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~ 309 (464)
T 3v7d_B 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH-GNIVVSGSYDNTLIVWDVAQMKCLYILSGH 309 (464)
T ss_dssp EEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred EeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence 2111100000 001255678899999988543 368999999999999999999999988 48
Q ss_pred CCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceee
Q 012367 349 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL 427 (465)
Q Consensus 349 ~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~ 427 (465)
...|++++|+| +++++++|+.|+.|++||+.+++.+. +.+|...|.+++|+ +++|++|+.||+|++||+.+.....
T Consensus 310 ~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~ 386 (464)
T 3v7d_B 310 TDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF 386 (464)
T ss_dssp SSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceee
Confidence 89999999999 99999999999999999999888765 77899999999997 5799999999999999999865432
Q ss_pred eEeeecCcccccCCceeeEEEeecC------Cccceeeeec
Q 012367 428 EKVDFHDRKKTSGNKITGIQGRISK------NYDNFRRFQT 462 (465)
Q Consensus 428 ~~~~~~~~~~~~~~~It~~~f~p~g------s~d~~~~~~~ 462 (465)
.. + +...+..+.|+|++ +.+.+++|+.
T Consensus 387 ~~---~-----~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~ 419 (464)
T 3v7d_B 387 SY---H-----HTNLSAITTFYVSDNILVSGSENQFNIYNL 419 (464)
T ss_dssp EE---E-----CTTCCCEEEEEECSSEEEEEETTEEEEEET
T ss_pred ee---c-----CCCCccEEEEEeCCCEEEEecCCeEEEEEC
Confidence 21 1 22455666777764 3345777774
No 93
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.90 E-value=7.8e-23 Score=205.52 Aligned_cols=169 Identities=24% Similarity=0.398 Sum_probs=144.9
Q ss_pred chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (465)
Q Consensus 214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (465)
....+.+|.+.|.+++|+|++++|++|+.||.|++||+.+.
T Consensus 209 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~--------------------------------------- 249 (401)
T 4aez_A 209 QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS--------------------------------------- 249 (401)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS---------------------------------------
T ss_pred eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC---------------------------------------
Confidence 34567899999999999999999999999999999999863
Q ss_pred eeeecCCcceeeeccccceEEEEecCCC--EEEEEe--CCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEE-
Q 012367 294 VFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCS--MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG- 368 (465)
Q Consensus 294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s--~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sg- 368 (465)
.++..+.+|...|.+++|+|++ ++++++ .|+.|++||+.+++++..+.+...|.+++|+| ++++++++
T Consensus 250 ------~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~ 322 (401)
T 4aez_A 250 ------IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSP-HSKEIMSTH 322 (401)
T ss_dssp ------SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECS-SSSEEEEEE
T ss_pred ------CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECC-CCCeEEEEe
Confidence 2345566899999999999953 677765 79999999999999999999999999999999 99999994
Q ss_pred -eCCCcEEEEeCCCCeEEe---cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367 369 -SIDGKVRIWGVCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 428 (465)
Q Consensus 369 -s~Dg~I~iwd~~~~~~~~---~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~ 428 (465)
+.||.|++||+.++.... +.+|...|.+++|+|+|++|++|+.||.|++|++.+++....
T Consensus 323 g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 323 GFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp CTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC------
T ss_pred ecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccc
Confidence 489999999999865443 567999999999999999999999999999999998776544
No 94
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.90 E-value=2.4e-22 Score=203.56 Aligned_cols=210 Identities=10% Similarity=0.235 Sum_probs=146.7
Q ss_pred chhhhccCC------------CcEEEEEECCCC--CEEEEEeCCCcEEEEecCCceeeeeeecCCCC-------------
Q 012367 214 TSQEIQAHK------------GCIWTLKFSPDG--RYLASGGEDGVVRIWHVTSVAASCKSFTDDGG------------- 266 (465)
Q Consensus 214 ~~~~l~~H~------------~~I~~l~fspdg--~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~------------- 266 (465)
....+.+|. +.|++++|+|++ .+|++|+.||+|++|++.+.............
T Consensus 73 ~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 152 (447)
T 3dw8_B 73 VYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTL 152 (447)
T ss_dssp EEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSC
T ss_pred EecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccce
Confidence 346677898 889999999998 79999999999999999764432110000000
Q ss_pred ---------------------cccccCCCeEEeccCCCCceeEecCC--ceeeec--CCcce-------eeeccccceEE
Q 012367 267 ---------------------FGSNAKEGKIKFGKKKSSHVPVVIPD--EVFQIE--ESPLQ-------ELHGHKGDVLD 314 (465)
Q Consensus 267 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~-------~~~gh~~~V~~ 314 (465)
.........+.+.......+.. ... .+|++. ...+. .+.+|...|.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 231 (447)
T 3dw8_B 153 RVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITA 231 (447)
T ss_dssp CCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEE
T ss_pred EeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEE
Confidence 0000111122222221111111 111 123332 11222 35689999999
Q ss_pred EEecCCC--EEEEEeCCCeEEEEeCCCCeE----eEEec-CCC------------ceEEEEEccCCCCEEEEEeCCCcEE
Q 012367 315 LAWSNSN--YLLSCSMDKTVRMWQVGCNQC----LNVFD-HHN------------YVTCVQFNPIDDNYFISGSIDGKVR 375 (465)
Q Consensus 315 l~~s~~~--~l~s~s~DgtV~lWD~~~~~~----l~~~~-h~~------------~V~~i~fsp~~~~~l~sgs~Dg~I~ 375 (465)
++|+|++ +|++|+.|++|++||++++.. +..+. |.. .|.+++|+| ++++|++++. +.|+
T Consensus 232 ~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~ 309 (447)
T 3dw8_B 232 AEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVK 309 (447)
T ss_dssp EEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEE
T ss_pred EEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECC-CCCEEEEeeC-CeEE
Confidence 9999974 899999999999999999886 67774 444 899999999 9999999998 9999
Q ss_pred EEeCCC-CeEEe-cccCCCC---------------eEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367 376 IWGVCE-KRVVD-WADVRDV---------------ISAICYIPDGKGFIVGSITGTCHFYKASGNDLK 426 (465)
Q Consensus 376 iwd~~~-~~~~~-~~~~~~~---------------V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~ 426 (465)
|||+++ ++.+. +..|... +..++|+|++++|++|+.||.|++||+.+++..
T Consensus 310 iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 310 VWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp EEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred EEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 999986 65544 4444321 334999999999999999999999999987654
No 95
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=5.6e-22 Score=202.46 Aligned_cols=221 Identities=13% Similarity=0.152 Sum_probs=158.2
Q ss_pred hhhccCCCcEEEEEECCCCCEE-EEEeCCCcEEEEecC--Cceeeeeeec--CCCCcccccCCCeEEeccCCCCceeEec
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVT--SVAASCKSFT--DDGGFGSNAKEGKIKFGKKKSSHVPVVI 290 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~L-aSgs~Dg~V~iWd~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (465)
....+|.+.|++++|+|+|++| |+|+.||+|+|||+. ++........ ....+ ..+.+...+........
T Consensus 96 ~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v------~~~~~sp~~~~l~~~~~ 169 (450)
T 2vdu_B 96 LGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRP------NAISIAEDDTTVIIADK 169 (450)
T ss_dssp ----CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCE------EEEEECTTSSEEEEEET
T ss_pred CCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCc------eEEEEcCCCCEEEEEeC
Confidence 4456899999999999999996 999999999999998 6554433321 11111 11112111111111111
Q ss_pred CCceeee--c-CC----cceeeeccccceEEEEecCC---C-EEEEEeCCCeEEEEeCCCCeEeEEe--cCCCceEEEEE
Q 012367 291 PDEVFQI--E-ES----PLQELHGHKGDVLDLAWSNS---N-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQF 357 (465)
Q Consensus 291 ~~~~~~~--~-~~----~~~~~~gh~~~V~~l~~s~~---~-~l~s~s~DgtV~lWD~~~~~~l~~~--~h~~~V~~i~f 357 (465)
...++.+ . .. +...+.+|...|.+++|+|+ + +|++++.|++|++||+.++.++..+ .|...|++++|
T Consensus 170 ~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~ 249 (450)
T 2vdu_B 170 FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICC 249 (450)
T ss_dssp TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEE
T ss_pred CCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEE
Confidence 1222222 1 11 33477889999999999998 6 8999999999999999999888774 58999999999
Q ss_pred ccCCCCEEEEEeCCCcEEEEeCCCCeEEecc--------------------------cCCCCeEEEEEeeCCCEEEEEE-
Q 012367 358 NPIDDNYFISGSIDGKVRIWGVCEKRVVDWA--------------------------DVRDVISAICYIPDGKGFIVGS- 410 (465)
Q Consensus 358 sp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~--------------------------~~~~~V~sv~~spdg~~l~sgs- 410 (465)
+ ++++|++|+.|+.|++||+.+++.+... .....|.+++|+|++++|++++
T Consensus 250 s--d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 327 (450)
T 2vdu_B 250 G--KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVE 327 (450)
T ss_dssp C--STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEET
T ss_pred C--CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEEC
Confidence 9 8999999999999999999998765422 2345799999999999999999
Q ss_pred cCCcEEEEEe--cCC-ceeee-EeeecCcccccCCceeeEEEeec
Q 012367 411 ITGTCHFYKA--SGN-DLKLE-KVDFHDRKKTSGNKITGIQGRIS 451 (465)
Q Consensus 411 ~dG~v~iwd~--~~~-~~~~~-~~~~~~~~~~~~~~It~~~f~p~ 451 (465)
.++.|++|++ ..+ ++... .+..+ ..|.++.|+|+
T Consensus 328 ~d~~i~iw~~~~~~~~~l~~~~~~~~~-------~~v~~~~~~~~ 365 (450)
T 2vdu_B 328 ATKCIIILEMSEKQKGDLALKQIITFP-------YNVISLSAHND 365 (450)
T ss_dssp TCSEEEEEEECSSSTTCEEEEEEEECS-------SCEEEEEEETT
T ss_pred CCCeEEEEEeccCCCCceeeccEeccC-------CceEEEEecCC
Confidence 8999999999 332 22222 33322 46888888885
No 96
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.90 E-value=2e-22 Score=230.38 Aligned_cols=193 Identities=19% Similarity=0.397 Sum_probs=162.2
Q ss_pred hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (465)
..+.+|.+.|++++|+|+|++||+|+.||+|+|||+.++
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~----------------------------------------- 647 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG----------------------------------------- 647 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-----------------------------------------
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCC-----------------------------------------
Confidence 356799999999999999999999999999999999874
Q ss_pred eecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccC-CCCEEEEEeCCC
Q 012367 296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPI-DDNYFISGSIDG 372 (465)
Q Consensus 296 ~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~-~~~~l~sgs~Dg 372 (465)
..+..+.+|.+.|.+++|+|++ +|++++.|++|++||+.+++++..+ .|...|++++|+|. +..++++|+.|+
T Consensus 648 ----~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~ 723 (1249)
T 3sfz_A 648 ----EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDF 723 (1249)
T ss_dssp ----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTS
T ss_pred ----CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCC
Confidence 2356677899999999999985 9999999999999999999999998 58899999999984 345899999999
Q ss_pred cEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecC-------cccccCCcee
Q 012367 373 KVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD-------RKKTSGNKIT 444 (465)
Q Consensus 373 ~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~-------~~~~~~~~It 444 (465)
.|++||+.++.... +.+|...|++++|+|+++.|++|+.||.|++||+.++..... +.... ........++
T Consensus 724 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~ 802 (1249)
T 3sfz_A 724 FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKS-INVKRFFLSSEDPPEDVEVIVK 802 (1249)
T ss_dssp CEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEE-EECCCCC--------CCCCCBC
T ss_pred eEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccce-ecccccccccCCccccccceEE
Confidence 99999999887664 778999999999999999999999999999999988765332 21111 0111234678
Q ss_pred eEEEeecCCc
Q 012367 445 GIQGRISKNY 454 (465)
Q Consensus 445 ~~~f~p~gs~ 454 (465)
++.|+|+|.+
T Consensus 803 ~~~~s~dg~~ 812 (1249)
T 3sfz_A 803 CCSWSADGDK 812 (1249)
T ss_dssp CCCBCTTSSE
T ss_pred EEEECCCCCE
Confidence 8888888654
No 97
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.4e-23 Score=218.58 Aligned_cols=162 Identities=15% Similarity=0.112 Sum_probs=139.7
Q ss_pred hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (465)
.++.+|.+.|++++|+|++ +||+|+.||+|++||+.+..
T Consensus 260 ~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~---------------------------------------- 298 (524)
T 2j04_B 260 LTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPE---------------------------------------- 298 (524)
T ss_dssp EEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCS----------------------------------------
T ss_pred EEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCC----------------------------------------
Confidence 4678999999999999865 89999999999999997521
Q ss_pred eecCCcceeeeccccceEEE--EecCC--CEEEEEeCCCeEEEEeCCCCeEeEEe-cCC--CceEEEEEccCCCCEEEEE
Q 012367 296 QIEESPLQELHGHKGDVLDL--AWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF-DHH--NYVTCVQFNPIDDNYFISG 368 (465)
Q Consensus 296 ~~~~~~~~~~~gh~~~V~~l--~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~--~~V~~i~fsp~~~~~l~sg 368 (465)
.+...+.+|...|.++ +|+|+ .+|+|||.|++|+|||+++++++..+ .|. ..|.+++|+| ++..|+++
T Consensus 299 ----~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp-~~~~l~s~ 373 (524)
T 2j04_B 299 ----VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP-QIYSYIYS 373 (524)
T ss_dssp ----SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET-TTTEEEEE
T ss_pred ----CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC-CcCeEEEe
Confidence 2345677899999999 56776 48999999999999999988877666 344 3589999999 89999999
Q ss_pred eCCCcEEEEeCCCCeE-EecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367 369 SIDGKVRIWGVCEKRV-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN 423 (465)
Q Consensus 369 s~Dg~I~iwd~~~~~~-~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~ 423 (465)
+.|++|++||++++.. ..+.+|...|++|+|+|+|+.|++|+.||+|++||+...
T Consensus 374 ~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 374 DGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp CSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred CCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence 9999999999998765 457789999999999999999999999999999997543
No 98
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1e-22 Score=206.43 Aligned_cols=206 Identities=13% Similarity=0.201 Sum_probs=146.7
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecC---CceeeeeeecCC-CCcccc---cCCCeEEec--c-CCCCceeEe
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT---SVAASCKSFTDD-GGFGSN---AKEGKIKFG--K-KKSSHVPVV 289 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~---~~~~~~~~~~~~-~~~~~~---~~~~~~~~~--~-~~~~~~~~~ 289 (465)
+|.++|++|+|+|++++|++|+.||+|++||+. .+.......... ...... .......+. . .........
T Consensus 109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (437)
T 3gre_A 109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL 188 (437)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence 699999999999999999999999999999995 322221111000 000000 000000000 0 001111111
Q ss_pred -cCC--ceeee-cCCcceeeec--cccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe--cCCCceEEEEEccC
Q 012367 290 -IPD--EVFQI-EESPLQELHG--HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPI 360 (465)
Q Consensus 290 -~~~--~~~~~-~~~~~~~~~g--h~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~--~h~~~V~~i~fsp~ 360 (465)
... .+|++ ..+++..+.+ |.+.|.+++|+|++ +|++|+.|++|++||+++++++..+ .|...|++++|+|.
T Consensus 189 ~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 268 (437)
T 3gre_A 189 TNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQF 268 (437)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTT
T ss_pred eCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccc
Confidence 111 13333 2456777877 89999999999975 8999999999999999999999987 57779999977652
Q ss_pred ---CCCEEEEEeCCCcEEEEeCCCCeEEe-ccc--------------------------CCCCeEEEEEeeCCCEEEEEE
Q 012367 361 ---DDNYFISGSIDGKVRIWGVCEKRVVD-WAD--------------------------VRDVISAICYIPDGKGFIVGS 410 (465)
Q Consensus 361 ---~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~--------------------------~~~~V~sv~~spdg~~l~sgs 410 (465)
++.+|++|+.|+.|++||+.+++.+. +.+ |...|++++|+ ++++|++|+
T Consensus 269 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~ 347 (437)
T 3gre_A 269 YGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDE 347 (437)
T ss_dssp TCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEG
T ss_pred cCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecC
Confidence 67799999999999999999877553 221 56679999999 788999999
Q ss_pred cCCcEEEEEecCCcee
Q 012367 411 ITGTCHFYKASGNDLK 426 (465)
Q Consensus 411 ~dG~v~iwd~~~~~~~ 426 (465)
.||.|++||+.+++..
T Consensus 348 ~d~~i~~wd~~~~~~~ 363 (437)
T 3gre_A 348 ATSSIVMFSLNELSSS 363 (437)
T ss_dssp GGTEEEEEETTCGGGC
T ss_pred CCCeEEEEECCCcccc
Confidence 9999999999877643
No 99
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.90 E-value=9.4e-22 Score=207.18 Aligned_cols=226 Identities=20% Similarity=0.277 Sum_probs=167.4
Q ss_pred cchhhhccCCCc-EEEEEECC--CCCEEEEEeCCCcEEEEecCCc--------eeeeeeecCCCCcccccCCCeEEeccC
Q 012367 213 YTSQEIQAHKGC-IWTLKFSP--DGRYLASGGEDGVVRIWHVTSV--------AASCKSFTDDGGFGSNAKEGKIKFGKK 281 (465)
Q Consensus 213 ~~~~~l~~H~~~-I~~l~fsp--dg~~LaSgs~Dg~V~iWd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (465)
...+.+.+|.+. |++++|+| ++++||+|+.||+|+|||+.++ ............+. .+.+...
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~------~~~~s~~ 127 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS------DISWDFE 127 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEE------EEEECTT
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEE------EEEEeCC
Confidence 455778899999 99999999 9999999999999999999744 22222221111111 1111111
Q ss_pred CCCceeEecC----Cceeee-cCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeEEec-CCC---
Q 012367 282 KSSHVPVVIP----DEVFQI-EESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHN--- 350 (465)
Q Consensus 282 ~~~~~~~~~~----~~~~~~-~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~--- 350 (465)
.......... ..++.+ ....+..+.+|...|.+++|+|++ .+++++.|++|++||+.+++++..+. |..
T Consensus 128 ~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~ 207 (615)
T 1pgu_A 128 GRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGS 207 (615)
T ss_dssp SSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTC
T ss_pred CCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCc
Confidence 1111111110 011111 245677888999999999999986 79999999999999999999999885 878
Q ss_pred ceEEEEEccCC-CCEEEEEeCCCcEEEEeCCCCeEEecc-----cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCc
Q 012367 351 YVTCVQFNPID-DNYFISGSIDGKVRIWGVCEKRVVDWA-----DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 424 (465)
Q Consensus 351 ~V~~i~fsp~~-~~~l~sgs~Dg~I~iwd~~~~~~~~~~-----~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~ 424 (465)
.|++++|+| + +++|++++.|+.|++||+.+++.+... .|...|.+++|+ ++++|++++.||.|++||+.+++
T Consensus 208 ~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~ 285 (615)
T 1pgu_A 208 FVRDVEFSP-DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSK 285 (615)
T ss_dssp CEEEEEECS-TTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTE
T ss_pred eEEEEEECC-CCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCc
Confidence 899999999 7 999999999999999999998877644 899999999999 99999999999999999999876
Q ss_pred eeeeEeeecCcccccCCceeeEEEe
Q 012367 425 LKLEKVDFHDRKKTSGNKITGIQGR 449 (465)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~It~~~f~ 449 (465)
... .+..+. ......+.++.+.
T Consensus 286 ~~~-~~~~~~--~~~~~~~~~~~~~ 307 (615)
T 1pgu_A 286 CVQ-KWTLDK--QQLGNQQVGVVAT 307 (615)
T ss_dssp EEE-EEECCT--TCGGGCEEEEEEE
T ss_pred EEE-EEcCCC--CcccCceeEEEeC
Confidence 533 333331 1122455566553
No 100
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.90 E-value=3.9e-22 Score=197.52 Aligned_cols=201 Identities=15% Similarity=0.130 Sum_probs=130.9
Q ss_pred hhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcc-cccCCCeEEeccCCCCceeEecCCc
Q 012367 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFG-SNAKEGKIKFGKKKSSHVPVVIPDE 293 (465)
Q Consensus 215 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (465)
.+++.+|.+.|++++|+|+|++||+|+.|| ++||++.+............... .......+.+.........
T Consensus 12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~------ 84 (355)
T 3vu4_A 12 IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVH------ 84 (355)
T ss_dssp -------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEE------
T ss_pred ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEE------
Confidence 345678999999999999999999999876 78999987655443322111100 0001111111111111111
Q ss_pred eeeec-CCcceeeeccccceEEEEecCC------------------------------------CEEEE--EeCCCeEEE
Q 012367 294 VFQIE-ESPLQELHGHKGDVLDLAWSNS------------------------------------NYLLS--CSMDKTVRM 334 (465)
Q Consensus 294 ~~~~~-~~~~~~~~gh~~~V~~l~~s~~------------------------------------~~l~s--~s~DgtV~l 334 (465)
+|+.. .+++..+. |...|.+++++++ ++++. |+.||+|++
T Consensus 85 iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~i 163 (355)
T 3vu4_A 85 IWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHI 163 (355)
T ss_dssp EEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEE
T ss_pred EEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEE
Confidence 11111 11222222 2333444433322 44444 578999999
Q ss_pred EeCCCCe----------------EeEEe-cCCCceEEEEEccCCCCEEEEEeCCCc-EEEEeCCCCeEEe-cc-c-CCCC
Q 012367 335 WQVGCNQ----------------CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGK-VRIWGVCEKRVVD-WA-D-VRDV 393 (465)
Q Consensus 335 WD~~~~~----------------~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~-I~iwd~~~~~~~~-~~-~-~~~~ 393 (465)
||+.++. ++..+ .|...|++++|+| ++++|++|+.|++ |+|||+++++.+. +. + |...
T Consensus 164 wd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~ 242 (355)
T 3vu4_A 164 TKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRAD 242 (355)
T ss_dssp EECCC------------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSC
T ss_pred EECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCc
Confidence 9998765 14555 6999999999999 9999999999998 9999999887775 44 4 8999
Q ss_pred eEEEEEeeCCCEEEEEEcCCcEEEEEecCCc
Q 012367 394 ISAICYIPDGKGFIVGSITGTCHFYKASGND 424 (465)
Q Consensus 394 V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~ 424 (465)
|++++|+|+|++|++|+.||+|++||+....
T Consensus 243 v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 243 VVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred EEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 9999999999999999999999999998654
No 101
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.90 E-value=7.2e-22 Score=201.72 Aligned_cols=227 Identities=14% Similarity=0.272 Sum_probs=164.7
Q ss_pred cchhhhccCCCcEEEEEEC--CCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcc--------------cccCCC-e
Q 012367 213 YTSQEIQAHKGCIWTLKFS--PDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFG--------------SNAKEG-K 275 (465)
Q Consensus 213 ~~~~~l~~H~~~I~~l~fs--pdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~--------------~~~~~~-~ 275 (465)
...+.+.+|.+.|++++|+ +++++|++|+.||+|++||+.+............... ...... .
T Consensus 194 ~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 273 (464)
T 3v7d_B 194 CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV 273 (464)
T ss_dssp EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCE
T ss_pred cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceE
Confidence 3456778999999999998 5788999999999999999987543321111000000 000000 0
Q ss_pred EEeccCCCCceeEecCC--ceeee-cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCC
Q 012367 276 IKFGKKKSSHVPVVIPD--EVFQI-EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHN 350 (465)
Q Consensus 276 ~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~ 350 (465)
..+.............+ .+|++ ..+++..+.+|...|.+++|+|++ ++++|+.|++|++||+.+++++..+ .|..
T Consensus 274 ~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~ 353 (464)
T 3v7d_B 274 RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA 353 (464)
T ss_dssp EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC
Confidence 00111111111111111 13333 245677888999999999999974 9999999999999999999999998 5889
Q ss_pred ceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEe
Q 012367 351 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV 430 (465)
Q Consensus 351 ~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~ 430 (465)
.|.+++|+ ++++++|+.||.|++||+.++.......+...+..++|+|+++++++|+ ||.|++||+.++++.....
T Consensus 354 ~v~~~~~~---~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~ 429 (464)
T 3v7d_B 354 LVGLLRLS---DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANI 429 (464)
T ss_dssp CEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCT
T ss_pred cEEEEEEc---CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhh
Confidence 99999996 5899999999999999999887766666788899999999999999998 9999999999887643211
Q ss_pred eecCcccccCCceeeEEEe
Q 012367 431 DFHDRKKTSGNKITGIQGR 449 (465)
Q Consensus 431 ~~~~~~~~~~~~It~~~f~ 449 (465)
..+...|.++.|+
T Consensus 430 ------~~~~~~v~~v~~~ 442 (464)
T 3v7d_B 430 ------LKDADQIWSVNFK 442 (464)
T ss_dssp ------TTTCSEEEEEEEE
T ss_pred ------ccCCCcEEEEEec
Confidence 2234778888886
No 102
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.90 E-value=7.7e-22 Score=200.43 Aligned_cols=232 Identities=19% Similarity=0.371 Sum_probs=170.0
Q ss_pred cccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec
Q 012367 211 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 290 (465)
Q Consensus 211 ~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (465)
.....+.+.+|.+.|++++| ++++|++|+.||+|++||+.++............+..........+.........
T Consensus 162 ~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~--- 236 (435)
T 1p22_A 162 TLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIA--- 236 (435)
T ss_dssp SCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEE---
T ss_pred CCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEE---
Confidence 34455678899999999999 7889999999999999999988766555443333222222121111111111111
Q ss_pred CCceeeecC-Ccc---eeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEE
Q 012367 291 PDEVFQIEE-SPL---QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYF 365 (465)
Q Consensus 291 ~~~~~~~~~-~~~---~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l 365 (465)
+|++.. ... ..+.+|...|.+++| .++++++|+.|++|++||+.+++++..+. |...|.+++| +++++
T Consensus 237 ---vwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l 309 (435)
T 1p22_A 237 ---VWDMASPTDITLRRVLVGHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY---RDRLV 309 (435)
T ss_dssp ---EEECSSSSCCEEEEEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE---ETTEE
T ss_pred ---EEeCCCCCCceeeeEecCCCCcEEEEEe-CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe---CCCEE
Confidence 233321 222 567899999999999 44699999999999999999999999885 8889999999 46899
Q ss_pred EEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce--------eeeEeeecCcc
Q 012367 366 ISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL--------KLEKVDFHDRK 436 (465)
Q Consensus 366 ~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~--------~~~~~~~~~~~ 436 (465)
++|+.||.|++||++++..+. +.+|...|.+++| ++.+|++|+.||.|++||+.++.. ....+..
T Consensus 310 ~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~---- 383 (435)
T 1p22_A 310 VSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE---- 383 (435)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC----
T ss_pred EEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccC----
Confidence 999999999999999887665 7789999999999 788999999999999999976541 2223322
Q ss_pred cccCCceeeEEEee----cCCcc-ceeeeec
Q 012367 437 KTSGNKITGIQGRI----SKNYD-NFRRFQT 462 (465)
Q Consensus 437 ~~~~~~It~~~f~p----~gs~d-~~~~~~~ 462 (465)
+...|++++|.. .++.| ++++|+.
T Consensus 384 --h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~ 412 (435)
T 1p22_A 384 --HSGRVFRLQFDEFQIVSSSHDDTILIWDF 412 (435)
T ss_dssp --CSSCCCCEEECSSCEEECCSSSEEEEEC-
T ss_pred --CCCCeEEEEeCCCEEEEEeCCCEEEEEEC
Confidence 345788887632 24445 4777764
No 103
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.5e-22 Score=224.17 Aligned_cols=174 Identities=13% Similarity=0.142 Sum_probs=139.3
Q ss_pred hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (465)
..+.||...+.+++|+|+|++||||+.||+|++||+.++.... ...+
T Consensus 429 ~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~---------------------------------~~~~ 475 (902)
T 2oaj_A 429 YLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD---------------------------------NASF 475 (902)
T ss_dssp CSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT---------------------------------TBCE
T ss_pred CcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC---------------------------------CceE
Confidence 3577888888889999999999999999999999998752100 0000
Q ss_pred eecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCC----------------------------------
Q 012367 296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN---------------------------------- 340 (465)
Q Consensus 296 ~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~---------------------------------- 340 (465)
..... ...-.+|...|.+++|+|++ +|++|+.|++|+|||+.++
T Consensus 476 ~~~l~-~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (902)
T 2oaj_A 476 EVNLS-RTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVR 554 (902)
T ss_dssp EEEHH-HHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECG
T ss_pred Eeech-hhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcccccccc
Confidence 00000 00012799999999999985 9999999999999999765
Q ss_pred -----------eEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe------cc-cCCCCeEEEEEe-
Q 012367 341 -----------QCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD------WA-DVRDVISAICYI- 400 (465)
Q Consensus 341 -----------~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~------~~-~~~~~V~sv~~s- 400 (465)
+++..+ .|.+.|++++|+| ++ +||+|+.|++|+|||+.++.++. +. +|...|++|+|+
T Consensus 555 ~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~ 632 (902)
T 2oaj_A 555 DRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVI 632 (902)
T ss_dssp GGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEE
T ss_pred ccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEE
Confidence 345666 4999999999999 99 99999999999999999887652 32 789999999999
Q ss_pred ----eCC---CEEEEEEcCCcEEEEEe---cCCce
Q 012367 401 ----PDG---KGFIVGSITGTCHFYKA---SGNDL 425 (465)
Q Consensus 401 ----pdg---~~l~sgs~dG~v~iwd~---~~~~~ 425 (465)
||| ++|++|+.||+|++||+ .+++.
T Consensus 633 ~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~ 667 (902)
T 2oaj_A 633 MEYGDDGYSSILMVCGTDMGEVITYKILPASGGKF 667 (902)
T ss_dssp EECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCE
T ss_pred EecCCCCCcceEEEEEecCCcEEEEEEecCCCCcE
Confidence 886 89999999999999999 55443
No 104
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.89 E-value=1.3e-22 Score=196.52 Aligned_cols=158 Identities=13% Similarity=0.087 Sum_probs=120.1
Q ss_pred hhhhccCCCcEEEEEECC---CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367 215 SQEIQAHKGCIWTLKFSP---DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (465)
Q Consensus 215 ~~~l~~H~~~I~~l~fsp---dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (465)
...+.+|...++.++|+| ++.+|||||.|++|+|||+.+++..
T Consensus 171 ~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l---------------------------------- 216 (356)
T 2w18_A 171 KENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLL---------------------------------- 216 (356)
T ss_dssp EEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEE----------------------------------
T ss_pred eeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEE----------------------------------
Confidence 345567888888888888 6789999999999999999986543
Q ss_pred CceeeecCCcceeeecc---ccceEEEEecCCCE-------------EEEEeCCCeEEEEeCCCCeEeEEe------cCC
Q 012367 292 DEVFQIEESPLQELHGH---KGDVLDLAWSNSNY-------------LLSCSMDKTVRMWQVGCNQCLNVF------DHH 349 (465)
Q Consensus 292 ~~~~~~~~~~~~~~~gh---~~~V~~l~~s~~~~-------------l~s~s~DgtV~lWD~~~~~~l~~~------~h~ 349 (465)
+++.+| ...|.+++|+|++. +++|+.|++|++||..+++++..+ +|.
T Consensus 217 -----------~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~ 285 (356)
T 2w18_A 217 -----------KKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQA 285 (356)
T ss_dssp -----------EEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCC
T ss_pred -----------EEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCc
Confidence 334333 23566667777663 367899999999999999988765 354
Q ss_pred CceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeE-EEEEeeCCCEEEEEEcCCcEEEEEe
Q 012367 350 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVIS-AICYIPDGKGFIVGSITGTCHFYKA 420 (465)
Q Consensus 350 ~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~-sv~~spdg~~l~sgs~dG~v~iwd~ 420 (465)
..+.+..+ ++.++++|+.|++|+|||+.+++++. +.+|...+. +++|+|||++|++|+.|++|+|||+
T Consensus 286 ~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 286 GRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred ceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 45444444 47899999999999999999998776 566777655 6899999999999999999999996
No 105
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.9e-22 Score=217.01 Aligned_cols=221 Identities=18% Similarity=0.279 Sum_probs=171.3
Q ss_pred CcchhhHHhhccccccccccccchhhhccCCCcEEEEEECCC--CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccc
Q 012367 192 PKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPD--GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS 269 (465)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~ 269 (465)
.....+.+|..... .......+.+|.++|++++|+|+ +++|++|+.||+|++||+.++..
T Consensus 28 ~~dg~I~vwd~~~~-----~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~------------- 89 (753)
T 3jro_A 28 SSDKTIKIFEVEGE-----THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW------------- 89 (753)
T ss_dssp ETTTEEEEEEEETT-----EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEE-------------
T ss_pred ECCCcEEEEecCCC-----CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcc-------------
Confidence 34455666643211 23445677899999999999998 99999999999999999876431
Q ss_pred ccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCC--C-EEEEEeCCCeEEEEeCCCCe---Ee
Q 012367 270 NAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQ---CL 343 (465)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~--~-~l~s~s~DgtV~lWD~~~~~---~l 343 (465)
..+..+.+|...|.+++|+|+ + ++++|+.||+|++||+.++. ..
T Consensus 90 ------------------------------~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~ 139 (753)
T 3jro_A 90 ------------------------------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI 139 (753)
T ss_dssp ------------------------------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE
T ss_pred ------------------------------cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee
Confidence 134556789999999999986 4 99999999999999998873 23
Q ss_pred EEecCCCceEEEEEccC------------CCCEEEEEeCCCcEEEEeCCCC----eEE-ecccCCCCeEEEEEeeC---C
Q 012367 344 NVFDHHNYVTCVQFNPI------------DDNYFISGSIDGKVRIWGVCEK----RVV-DWADVRDVISAICYIPD---G 403 (465)
Q Consensus 344 ~~~~h~~~V~~i~fsp~------------~~~~l~sgs~Dg~I~iwd~~~~----~~~-~~~~~~~~V~sv~~spd---g 403 (465)
....|...|.+++|+|. ++.++++|+.||.|++||++++ .+. .+.+|...|++++|+|+ +
T Consensus 140 ~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~ 219 (753)
T 3jro_A 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR 219 (753)
T ss_dssp EEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred EeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCC
Confidence 33368899999999994 4899999999999999999875 333 46789999999999999 8
Q ss_pred CEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc------c-ceeeeec
Q 012367 404 KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY------D-NFRRFQT 462 (465)
Q Consensus 404 ~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~------d-~~~~~~~ 462 (465)
++|++|+.||.|++||+.++......... ....+...|+++.|+|+|.+ | .+++|+.
T Consensus 220 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~--~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~ 283 (753)
T 3jro_A 220 SYLASVSQDRTCIIWTQDNEQGPWKKTLL--KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (753)
T ss_dssp EEEEEEESSSCEEEEEESSSSSCCBCCBS--SSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred CEEEEEecCCEEEEecCCCCCCcceeEEe--ccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence 99999999999999999986433221111 11234578999999998643 3 3677764
No 106
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.89 E-value=1.8e-21 Score=222.64 Aligned_cols=204 Identities=20% Similarity=0.335 Sum_probs=158.9
Q ss_pred ccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCc-eeEec
Q 012367 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH-VPVVI 290 (465)
Q Consensus 212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 290 (465)
....+.+.+|.+.|++++|+|+|++||+|+.||+|+|||+.++............+.. +.+....... .....
T Consensus 647 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~------~~~~~~~~~~~l~sg~ 720 (1249)
T 3sfz_A 647 GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNC------CHFTNKSNHLLLATGS 720 (1249)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE------EEECSSSSCCEEEEEE
T ss_pred CCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEE------EEEecCCCceEEEEEe
Confidence 3445677899999999999999999999999999999999988776655443332211 1111111111 11111
Q ss_pred -CC--ceeeec-CCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-------------------
Q 012367 291 -PD--EVFQIE-ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF------------------- 346 (465)
Q Consensus 291 -~~--~~~~~~-~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~------------------- 346 (465)
.. .+|++. ...+..+.+|.+.|.+++|+|++ +|++++.||+|++||+.++.....+
T Consensus 721 ~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1249)
T 3sfz_A 721 NDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI 800 (1249)
T ss_dssp TTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCC
T ss_pred CCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccce
Confidence 11 133332 45567888999999999999975 9999999999999998776544332
Q ss_pred -------------------------------------cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cc
Q 012367 347 -------------------------------------DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WA 388 (465)
Q Consensus 347 -------------------------------------~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~ 388 (465)
.|...|.+++|+| +++++++|+.|+.|++||+.++..+. +.
T Consensus 801 v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 879 (1249)
T 3sfz_A 801 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCR 879 (1249)
T ss_dssp BCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECS-STTEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeeecC
Confidence 3667899999999 99999999999999999999887665 77
Q ss_pred cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367 389 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASG 422 (465)
Q Consensus 389 ~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~ 422 (465)
+|...|++++|+|+|+.|++++.||.|++|++.+
T Consensus 880 ~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 880 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred CCccceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence 8999999999999999999999999999999764
No 107
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.89 E-value=1.1e-21 Score=198.31 Aligned_cols=169 Identities=26% Similarity=0.491 Sum_probs=146.2
Q ss_pred chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (465)
Q Consensus 214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (465)
....+.+|...|.++.|+|+|++|++++.|+.|+||++.++...
T Consensus 222 ~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~------------------------------------ 265 (420)
T 4gga_A 222 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG------------------------------------ 265 (420)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSC------------------------------------
T ss_pred eeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccccc------------------------------------
Confidence 34567899999999999999999999999999999998764321
Q ss_pred eeeecCCcceeeeccccceEEEEecCCC--EEEE--EeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEe
Q 012367 294 VFQIEESPLQELHGHKGDVLDLAWSNSN--YLLS--CSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS 369 (465)
Q Consensus 294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s--~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs 369 (465)
...+.....|.+.|.+++|+|.+ .+++ |+.|++|++||+.++.++..+.+...|.++.|+| +++.+++++
T Consensus 266 -----~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~-~~~~lv~~s 339 (420)
T 4gga_A 266 -----WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP-HYKELISGH 339 (420)
T ss_dssp -----SCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEET-TTTEEEEEE
T ss_pred -----ceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecC-CCCeEEEEE
Confidence 12355667899999999999853 5554 4579999999999999999999889999999999 888887765
Q ss_pred --CCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCc
Q 012367 370 --IDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 424 (465)
Q Consensus 370 --~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~ 424 (465)
.|+.|+|||+.+++.+. +.+|...|++++|+|||++|++|+.||+|+|||+.+..
T Consensus 340 g~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 340 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp CTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred ecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 68999999999887665 78899999999999999999999999999999997643
No 108
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.89 E-value=7e-22 Score=203.04 Aligned_cols=172 Identities=15% Similarity=0.145 Sum_probs=139.7
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (465)
+|...|++++|||+|++||+++.||+|+|||..+
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---------------------------------------------- 116 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---------------------------------------------- 116 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE----------------------------------------------
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----------------------------------------------
Confidence 5688999999999999999999999999999643
Q ss_pred Ccceeeecccc-----ceEEEEecCCC-EEEEEeCCCeEEEEeCCCCe-------EeEEe-----cCCCceEEEEEccCC
Q 012367 300 SPLQELHGHKG-----DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ-------CLNVF-----DHHNYVTCVQFNPID 361 (465)
Q Consensus 300 ~~~~~~~gh~~-----~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~-------~l~~~-----~h~~~V~~i~fsp~~ 361 (465)
.+..+. |.. .|.+++|+|++ +|++|+.||+|+|||+.++. .+..+ +|.+.|.+++|+| +
T Consensus 117 -~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-d 193 (588)
T 2j04_A 117 -MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-D 193 (588)
T ss_dssp -EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-T
T ss_pred -eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-C
Confidence 122233 433 59999999986 99999999999999999875 35664 3677999999999 8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEE----ec-ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcc
Q 012367 362 DNYFISGSIDGKVRIWGVCEKRVV----DW-ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK 436 (465)
Q Consensus 362 ~~~l~sgs~Dg~I~iwd~~~~~~~----~~-~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~ 436 (465)
+ +++++.|++|++||+.++... .+ .+|...|.+++|+ |+.|++++ +|+|++||+.+++......
T Consensus 194 g--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~------ 262 (588)
T 2j04_A 194 V--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKT------ 262 (588)
T ss_dssp E--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEEC------
T ss_pred c--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEc------
Confidence 7 888899999999999887642 24 3688899999999 68899887 6999999999887643322
Q ss_pred cccCCceeeEEE--eecC
Q 012367 437 KTSGNKITGIQG--RISK 452 (465)
Q Consensus 437 ~~~~~~It~~~f--~p~g 452 (465)
.+...+.++.| +|++
T Consensus 263 -gh~~~V~~va~~~s~d~ 279 (588)
T 2j04_A 263 -GSLENFHIIPLNHEKES 279 (588)
T ss_dssp -SCCSCCCEEEETTCSSC
T ss_pred -CCCceEEEEEeeeCCCC
Confidence 14467888888 7775
No 109
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.89 E-value=8.6e-22 Score=215.04 Aligned_cols=199 Identities=20% Similarity=0.322 Sum_probs=165.6
Q ss_pred cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (465)
Q Consensus 213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (465)
...+.+.+|.++|++++|+|+|++||+|+.||.|+|||+.++
T Consensus 46 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~-------------------------------------- 87 (814)
T 3mkq_A 46 VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG-------------------------------------- 87 (814)
T ss_dssp EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC--------------------------------------
T ss_pred ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--------------------------------------
Confidence 345677899999999999999999999999999999999864
Q ss_pred ceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCC-eEeEEe-cCCCceEEEEEccCCCCEEEEEe
Q 012367 293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN-QCLNVF-DHHNYVTCVQFNPIDDNYFISGS 369 (465)
Q Consensus 293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~-~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs 369 (465)
..+..+.+|.+.|.+++|+|++ +|++++.|++|++||+.++ .+...+ .|...|.+++|+|.++++|++++
T Consensus 88 -------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 160 (814)
T 3mkq_A 88 -------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (814)
T ss_dssp -------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred -------cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence 2355677899999999999986 8999999999999999887 666666 58899999999997788999999
Q ss_pred CCCcEEEEeCCCCeEEe-cc-cCCCCeEEEEEee--CCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceee
Q 012367 370 IDGKVRIWGVCEKRVVD-WA-DVRDVISAICYIP--DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 445 (465)
Q Consensus 370 ~Dg~I~iwd~~~~~~~~-~~-~~~~~V~sv~~sp--dg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~ 445 (465)
.||.|++||+.++.... .. .+...|.+++|+| ++.+|++|+.||.|++||+.+++.. ..+.. +...|+.
T Consensus 161 ~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-~~~~~------~~~~v~~ 233 (814)
T 3mkq_A 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV-ATLEG------HMSNVSF 233 (814)
T ss_dssp TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEE-EEEEC------CSSCEEE
T ss_pred CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE-EEEcC------CCCCEEE
Confidence 99999999998765443 33 3448899999999 9999999999999999999887642 23322 3467999
Q ss_pred EEEeecCCc------c-ceeeeecC
Q 012367 446 IQGRISKNY------D-NFRRFQTP 463 (465)
Q Consensus 446 ~~f~p~gs~------d-~~~~~~~p 463 (465)
+.|+|++.+ | .+++|+..
T Consensus 234 ~~~~~~~~~l~~~~~dg~v~vwd~~ 258 (814)
T 3mkq_A 234 AVFHPTLPIIISGSEDGTLKIWNSS 258 (814)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETT
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECC
Confidence 999998743 3 47777653
No 110
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.9e-21 Score=189.80 Aligned_cols=160 Identities=11% Similarity=0.062 Sum_probs=129.7
Q ss_pred cCCCcEEEEEECC--CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeee
Q 012367 220 AHKGCIWTLKFSP--DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 297 (465)
Q Consensus 220 ~H~~~I~~l~fsp--dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (465)
+|.++|.+++|+| ++++|++|+.||+|++||+.++..
T Consensus 123 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~----------------------------------------- 161 (343)
T 3lrv_A 123 DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ----------------------------------------- 161 (343)
T ss_dssp CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-----------------------------------------
T ss_pred CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-----------------------------------------
Confidence 6779999999999 999999999999999999987533
Q ss_pred cCCcceee-eccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEe-EEe-c-CCCceEEEEEccCCCCEEEEEeCCC
Q 012367 298 EESPLQEL-HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCL-NVF-D-HHNYVTCVQFNPIDDNYFISGSIDG 372 (465)
Q Consensus 298 ~~~~~~~~-~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l-~~~-~-h~~~V~~i~fsp~~~~~l~sgs~Dg 372 (465)
+... ..|...|.+++|+|++ +|++|+.|++|++||+++++.+ ..+ . |...|++++|+| ++.+|++++ |+
T Consensus 162 ----~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~-~g~~l~s~~-~~ 235 (343)
T 3lrv_A 162 ----YIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFAD-NGYWMVVEC-DQ 235 (343)
T ss_dssp ----EEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECT-TSSEEEEEE-SS
T ss_pred ----EEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeC-CCCEEEEEe-CC
Confidence 1112 2355679999999986 8889999999999999999887 666 3 889999999999 999999999 55
Q ss_pred cEEEEeCCCCeEEe-ccc---CCCCe--EEEEEeeCCCEEEEEEc-CCcEEEEEecCCcee
Q 012367 373 KVRIWGVCEKRVVD-WAD---VRDVI--SAICYIPDGKGFIVGSI-TGTCHFYKASGNDLK 426 (465)
Q Consensus 373 ~I~iwd~~~~~~~~-~~~---~~~~V--~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~~ 426 (465)
.|++||++++..+. +.. +...+ .+++|+|+|++|++++. |+.+++|++......
T Consensus 236 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~ 296 (343)
T 3lrv_A 236 TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN 296 (343)
T ss_dssp BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS
T ss_pred eEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc
Confidence 99999999876543 221 33334 36999999999999999 999999999765443
No 111
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.88 E-value=1.3e-20 Score=191.79 Aligned_cols=234 Identities=18% Similarity=0.325 Sum_probs=172.2
Q ss_pred ccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (465)
Q Consensus 212 ~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (465)
....+.+.+|.+.|++++|+ +.+|++|+.||+|++||+.++............+......+...+........
T Consensus 149 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i----- 221 (445)
T 2ovr_B 149 GKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL----- 221 (445)
T ss_dssp CCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEE-----
T ss_pred CcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEE-----
Confidence 34556788999999999997 56999999999999999998876655543333222211111111111111111
Q ss_pred Cceeeec-CCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEe
Q 012367 292 DEVFQIE-ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS 369 (465)
Q Consensus 292 ~~~~~~~-~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs 369 (465)
.+|++. .+.+..+.+|...|.+++| .++++++++.|++|++||+.+++++..+. |...|.+++| ++.++++|+
T Consensus 222 -~~wd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~ 296 (445)
T 2ovr_B 222 -RVWDIETGQCLHVLMGHVAAVRCVQY-DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGS 296 (445)
T ss_dssp -EEEESSSCCEEEEEECCSSCEEEEEE-CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEE
T ss_pred -EEEECCCCcEEEEEcCCcccEEEEEE-CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE---CCCEEEEEe
Confidence 123332 4567788899999999999 45689999999999999999999999885 8889999999 678999999
Q ss_pred CCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEE
Q 012367 370 IDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQG 448 (465)
Q Consensus 370 ~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f 448 (465)
.|+.|++||+.+++.+. +.+|...+.++.+ +++.+++|+.||.|++||+.+++... .+..+ ..+...|++++|
T Consensus 297 ~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~---~~~~~~v~~~~~ 370 (445)
T 2ovr_B 297 LDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQ-TLQGP---NKHQSAVTCLQF 370 (445)
T ss_dssp TTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEE-EECST---TSCSSCEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEE-EEccC---CCCCCCEEEEEE
Confidence 99999999999887665 6778888888776 56799999999999999998775532 22221 124467888887
Q ss_pred eec----CCcc-ceeeeecC
Q 012367 449 RIS----KNYD-NFRRFQTP 463 (465)
Q Consensus 449 ~p~----gs~d-~~~~~~~p 463 (465)
.+. ++.| .+++|+..
T Consensus 371 ~~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 371 NKNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp CSSEEEEEETTSEEEEEETT
T ss_pred CCCEEEEEeCCCeEEEEECC
Confidence 543 4444 47777653
No 112
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.1e-21 Score=201.73 Aligned_cols=214 Identities=13% Similarity=0.118 Sum_probs=149.5
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec-
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE- 298 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 298 (465)
.-...|.+|+|||||+++||||.|++|+ |....... .++ ......+.+.+.+ ..+.+.+.
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l------~gh---~~~v~~V~FsPdg--------~~~~~~~~~ 73 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI------NCN---SKNLFHVKEFPLE--------FENKLDFEL 73 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC------SSB---GGGTEEEEEECCC--------CCCTTTTSC
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccccee------cCC---CccEEEEEECCCC--------CcceEEEEe
Confidence 3457899999999999999999999999 65443221 010 1111112222111 11122221
Q ss_pred CCcceeee-ccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCCC-----ceEEEEEccCCCCEEEEEeCC
Q 012367 299 ESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHN-----YVTCVQFNPIDDNYFISGSID 371 (465)
Q Consensus 299 ~~~~~~~~-gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~~-----~V~~i~fsp~~~~~l~sgs~D 371 (465)
......+. +|...|.+++|+|+| .|++++.||+|++||... ++..+.|.. .|.+++|+| ++++|++|+.|
T Consensus 74 ~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSP-DG~~LAsgs~D 150 (588)
T 2j04_A 74 AQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNP-IESSIVVGNED 150 (588)
T ss_dssp CCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECS-SSSCEEEEETT
T ss_pred CCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcC-CCCEEEEEcCC
Confidence 11111222 568899999999986 799999999999999654 667666544 499999999 99999999999
Q ss_pred CcEEEEeCCCCeE--------Eec----ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceee--eEeeecCccc
Q 012367 372 GKVRIWGVCEKRV--------VDW----ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL--EKVDFHDRKK 437 (465)
Q Consensus 372 g~I~iwd~~~~~~--------~~~----~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~--~~~~~~~~~~ 437 (465)
|+|+|||+.++.+ ..+ .+|..+|.+++|+||| +++++.|++|++||+.++.... ..+.. +
T Consensus 151 GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~-~--- 224 (588)
T 2j04_A 151 GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQN-A--- 224 (588)
T ss_dssp SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEEC-C---
T ss_pred CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecc-c---
Confidence 9999999998742 233 6688899999999999 8899999999999999877531 22210 1
Q ss_pred ccCCceeeEEEe----ecCCccceeeeec
Q 012367 438 TSGNKITGIQGR----ISKNYDNFRRFQT 462 (465)
Q Consensus 438 ~~~~~It~~~f~----p~gs~d~~~~~~~ 462 (465)
+...|.+++|+ ..+.+.++++|+.
T Consensus 225 -h~~~V~svaFsg~~LASa~~~tIkLWd~ 252 (588)
T 2j04_A 225 -SRRKITDLKIVDYKVVLTCPGYVHKIDL 252 (588)
T ss_dssp -CSSCCCCEEEETTEEEEECSSEEEEEET
T ss_pred -ccCcEEEEEEECCEEEEEeCCeEEEEEC
Confidence 22567777776 2233456788874
No 113
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.88 E-value=3.9e-21 Score=185.24 Aligned_cols=168 Identities=25% Similarity=0.464 Sum_probs=143.3
Q ss_pred chhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (465)
Q Consensus 214 ~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (465)
....+.+|...+.++.|++++++|++++.||+|+|||+.++...
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~------------------------------------ 185 (318)
T 4ggc_A 142 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG------------------------------------ 185 (318)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB------------------------------------
T ss_pred eEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc------------------------------------
Confidence 34567899999999999999999999999999999999864321
Q ss_pred eeeecCCcceeeeccccceEEEEecCCC----EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEe
Q 012367 294 VFQIEESPLQELHGHKGDVLDLAWSNSN----YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS 369 (465)
Q Consensus 294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~~----~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs 369 (465)
.........|.+.|.+++++|.+ .+++++.+++|++||...........+...+.++.|+| ++..+++++
T Consensus 186 -----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~s 259 (318)
T 4ggc_A 186 -----WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP-HYKELISGH 259 (318)
T ss_dssp -----SCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEET-TTTEEEEEE
T ss_pred -----ccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecc-cccceEEEE
Confidence 12234455688899999999853 34567789999999999999998889999999999999 777777654
Q ss_pred --CCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367 370 --IDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN 423 (465)
Q Consensus 370 --~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~ 423 (465)
.|+.|+|||+.+++.+. +.+|.+.|++++|+|+|++|++|+.||+|+|||+.+.
T Consensus 260 g~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 260 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred EcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 79999999999887765 7889999999999999999999999999999998754
No 114
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.88 E-value=3.4e-22 Score=200.72 Aligned_cols=167 Identities=19% Similarity=0.245 Sum_probs=125.3
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec
Q 012367 219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 298 (465)
Q Consensus 219 ~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (465)
.+|.+.+....+++++.+||+|+.|++|+|||+.+......
T Consensus 86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~--------------------------------------- 126 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQ--------------------------------------- 126 (393)
T ss_dssp C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEE---------------------------------------
T ss_pred cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCcccee---------------------------------------
Confidence 46777777788888899999999999999999987543221
Q ss_pred CCcceeeeccccceEEEEecC--------C-CEEEEEeCCCeEEEEeCCCCeEeE-EecCCCceEEEEEccCCCCEEEEE
Q 012367 299 ESPLQELHGHKGDVLDLAWSN--------S-NYLLSCSMDKTVRMWQVGCNQCLN-VFDHHNYVTCVQFNPIDDNYFISG 368 (465)
Q Consensus 299 ~~~~~~~~gh~~~V~~l~~s~--------~-~~l~s~s~DgtV~lWD~~~~~~l~-~~~h~~~V~~i~fsp~~~~~l~sg 368 (465)
.++..+.||.+.|.+++|+| + .+|+|||.|++|+|||+.++.++. .+.|...|.+++|+|.+.++|++|
T Consensus 127 -~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~ 205 (393)
T 4gq1_A 127 -HVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVG 205 (393)
T ss_dssp -EEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEE
T ss_pred -eeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEec
Confidence 22445679999999999986 3 389999999999999998776554 457999999999999445689999
Q ss_pred eCCCcEEEEeCCCCeEEe--------------------------cccCCCCeEEEEEe-eCCCEEEEEEcCCcEEEEEec
Q 012367 369 SIDGKVRIWGVCEKRVVD--------------------------WADVRDVISAICYI-PDGKGFIVGSITGTCHFYKAS 421 (465)
Q Consensus 369 s~Dg~I~iwd~~~~~~~~--------------------------~~~~~~~V~sv~~s-pdg~~l~sgs~dG~v~iwd~~ 421 (465)
+.|++|++||+++++... ..+|...|.++.|. |+|+.|++++.|+++++||+.
T Consensus 206 ~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~ 285 (393)
T 4gq1_A 206 ERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLF 285 (393)
T ss_dssp ETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-
T ss_pred CCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECc
Confidence 999999999998764321 23577789999987 799999999999999999998
Q ss_pred CCce
Q 012367 422 GNDL 425 (465)
Q Consensus 422 ~~~~ 425 (465)
.++.
T Consensus 286 ~~~~ 289 (393)
T 4gq1_A 286 ANND 289 (393)
T ss_dssp ----
T ss_pred cCCC
Confidence 6654
No 115
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.88 E-value=1.5e-20 Score=191.27 Aligned_cols=224 Identities=18% Similarity=0.360 Sum_probs=167.7
Q ss_pred cchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (465)
Q Consensus 213 ~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (465)
...+.+.+|.+.|.+++|+ +.+|++|+.||+|++||+.++............+......+. ........+
T Consensus 190 ~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~--------~l~~~~~dg 259 (445)
T 2ovr_B 190 ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR--------RVVSGAYDF 259 (445)
T ss_dssp EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSS--------CEEEEETTS
T ss_pred cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCC--------EEEEEcCCC
Confidence 3456678999999999995 568999999999999999987766555443332222111111 111111112
Q ss_pred c--eeee-cCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEE
Q 012367 293 E--VFQI-EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISG 368 (465)
Q Consensus 293 ~--~~~~-~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sg 368 (465)
. +|++ ...++..+.+|...|.+++| .+.++++++.|++|++||+.+++++..+ .|...+.++.+ +++++++|
T Consensus 260 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~ 335 (445)
T 2ovr_B 260 MVKVWDPETETCLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL---KDNILVSG 335 (445)
T ss_dssp CEEEEEGGGTEEEEEECCCSSCEEEEEE-CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE---ETTEEEEE
T ss_pred EEEEEECCCCcEeEEecCCCCceEEEEE-CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE---eCCEEEEE
Confidence 1 2333 24567788899999999999 4568999999999999999999999888 58888998887 45799999
Q ss_pred eCCCcEEEEeCCCCeEEe-ccc---CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCcee
Q 012367 369 SIDGKVRIWGVCEKRVVD-WAD---VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 444 (465)
Q Consensus 369 s~Dg~I~iwd~~~~~~~~-~~~---~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It 444 (465)
+.||.|++||+.+++.+. +.. |...|++++|+ +++|++|+.||.|++||+.+++......... ...+...|+
T Consensus 336 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~--~~~~~~~v~ 411 (445)
T 2ovr_B 336 NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLE--SGGSGGVVW 411 (445)
T ss_dssp ETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECT--TGGGTCEEE
T ss_pred eCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccc--cCCCCceEE
Confidence 999999999999887665 333 88899999995 6799999999999999999887643322221 123557899
Q ss_pred eEEEeecCCc
Q 012367 445 GIQGRISKNY 454 (465)
Q Consensus 445 ~~~f~p~gs~ 454 (465)
+++|+|++.+
T Consensus 412 ~~~~s~~~~~ 421 (445)
T 2ovr_B 412 RIRASNTKLV 421 (445)
T ss_dssp EEEECSSEEE
T ss_pred EEEecCCEEE
Confidence 9999988543
No 116
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.87 E-value=3.6e-21 Score=187.67 Aligned_cols=221 Identities=12% Similarity=0.081 Sum_probs=156.2
Q ss_pred hhhccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEec-CCceeeeeeec--CCCCcccccCCCeEEeccCCCCceeEecC
Q 012367 216 QEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHV-TSVAASCKSFT--DDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (465)
..+.+|.+.|++++|+|+++ +|++|+.||.|++||+ .+..... ... ....+ ..+.+.. ..........
T Consensus 50 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~~~v------~~l~~~~-~~~l~s~~~d 121 (342)
T 1yfq_A 50 LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQA-LTNNEANLGI------CRICKYG-DDKLIAASWD 121 (342)
T ss_dssp EEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEE-CBSCCCCSCE------EEEEEET-TTEEEEEETT
T ss_pred eeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEe-ccccCCCCce------EEEEeCC-CCEEEEEcCC
Confidence 34458999999999999999 9999999999999999 7764421 111 11111 1111211 1111111111
Q ss_pred Cc--eeeec----------CCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCC-CeEe---EEecCCCceEEE
Q 012367 292 DE--VFQIE----------ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC-NQCL---NVFDHHNYVTCV 355 (465)
Q Consensus 292 ~~--~~~~~----------~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~-~~~l---~~~~h~~~V~~i 355 (465)
.. +|++. .+++..+. |...|.+++|+|++ +++++.|+.|++||+.+ +... ....|...|.++
T Consensus 122 ~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i 199 (342)
T 1yfq_A 122 GLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDV 199 (342)
T ss_dssp SEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEE
T ss_pred CeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEE
Confidence 11 22222 33455555 88999999999987 99999999999999988 5432 333588899999
Q ss_pred EEccCCCCEEEEEeCCCcEEEEeCCCC------eE-EecccCCC---------CeEEEEEeeCCCEEEEEEcCCcEEEEE
Q 012367 356 QFNPIDDNYFISGSIDGKVRIWGVCEK------RV-VDWADVRD---------VISAICYIPDGKGFIVGSITGTCHFYK 419 (465)
Q Consensus 356 ~fsp~~~~~l~sgs~Dg~I~iwd~~~~------~~-~~~~~~~~---------~V~sv~~spdg~~l~sgs~dG~v~iwd 419 (465)
+|+|.+++++++|+.||.|++|++... .. ..+..|.. .|++++|+|++++|++|+.||.|++||
T Consensus 200 ~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd 279 (342)
T 1yfq_A 200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN 279 (342)
T ss_dssp EECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred EECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEc
Confidence 999855789999999999999999765 32 33555544 999999999999999999999999999
Q ss_pred ecCCceeeeEeeecCcccccCCceeeEEEeecCCc
Q 012367 420 ASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY 454 (465)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~ 454 (465)
+.+++... .+..+ +...|+++. |++.+
T Consensus 280 ~~~~~~~~-~~~~~-----h~~~v~~~~--~~~~~ 306 (342)
T 1yfq_A 280 LQTRKKIK-NFAKF-----NEDSVVKIA--CSDNI 306 (342)
T ss_dssp TTTTEEEE-ECCCC-----SSSEEEEEE--ECSSE
T ss_pred CccHhHhh-hhhcc-----cCCCceEec--CCCCe
Confidence 99876532 23222 145777777 66543
No 117
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.87 E-value=2.3e-20 Score=196.59 Aligned_cols=147 Identities=13% Similarity=0.235 Sum_probs=115.7
Q ss_pred cccceEEEEecCCCEEEEEeC-CCeEEEEeCCCCeEe-EEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeE
Q 012367 308 HKGDVLDLAWSNSNYLLSCSM-DKTVRMWQVGCNQCL-NVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 384 (465)
Q Consensus 308 h~~~V~~l~~s~~~~l~s~s~-DgtV~lWD~~~~~~l-~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~ 384 (465)
|...+.+++|+ +.+|++++. |+.|++||+.++... ..+ .|...|++++|+| ++++|++|+.|+.|++||+.+++.
T Consensus 445 ~~~~~~~~~~~-~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~~ 522 (615)
T 1pgu_A 445 LNSPGSAVSLS-QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREV 522 (615)
T ss_dssp CSSCEEEEEEC-SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE
T ss_pred cCCCceEEEEc-CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECC-CCCEEEEcCCCCeEEEeeCCCCcc
Confidence 44556666666 556777777 777888887776554 333 4888999999999 999999999999999999999887
Q ss_pred Ee-ccc-CCCCeEEEEEee----------CCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC
Q 012367 385 VD-WAD-VRDVISAICYIP----------DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK 452 (465)
Q Consensus 385 ~~-~~~-~~~~V~sv~~sp----------dg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g 452 (465)
+. +.+ |...|++++|+| ++++|++|+.||.|++||+.++......+.. +...|+++.|+|++
T Consensus 523 ~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~------h~~~v~~l~~s~~~ 596 (615)
T 1pgu_A 523 KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA------HKDGVNNLLWETPS 596 (615)
T ss_dssp EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTS------STTCEEEEEEEETT
T ss_pred eeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhc------CccceEEEEEcCCC
Confidence 76 455 999999999999 9999999999999999999987433333322 34789999999986
Q ss_pred C-----cc-ceeeeec
Q 012367 453 N-----YD-NFRRFQT 462 (465)
Q Consensus 453 s-----~d-~~~~~~~ 462 (465)
. .| .+++|++
T Consensus 597 ~l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 597 TLVSSGADACIKRWNV 612 (615)
T ss_dssp EEEEEETTSCEEEEEE
T ss_pred CeEEecCCceEEEEee
Confidence 3 23 3677764
No 118
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.87 E-value=4.1e-20 Score=187.66 Aligned_cols=223 Identities=20% Similarity=0.366 Sum_probs=164.3
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeee-
Q 012367 219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI- 297 (465)
Q Consensus 219 ~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 297 (465)
.+|...|+|++| ++++|++|+.||+|++||+.++............+......+...+.......+. +|++
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~------vwd~~ 201 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVR------VWDVN 201 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEE------EEESS
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEE------EEECC
Confidence 467788999988 7889999999999999999987766555443333322222222222222222222 2333
Q ss_pred cCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEe---EEe-cCCCceEEEEEccCCCCEEEEEeCCCc
Q 012367 298 EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCL---NVF-DHHNYVTCVQFNPIDDNYFISGSIDGK 373 (465)
Q Consensus 298 ~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l---~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~ 373 (465)
..+.+..+.+|...|.+++|++ +++++|+.|++|++||+.++..+ ..+ .|...|.+++| +++++++|+.||.
T Consensus 202 ~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~ 277 (435)
T 1p22_A 202 TGEMLNTLIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRT 277 (435)
T ss_dssp SCCEEEEECCCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEETTSE
T ss_pred CCcEEEEEcCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCe
Confidence 2456778889999999999975 58999999999999999987755 333 58899999999 5789999999999
Q ss_pred EEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEee--
Q 012367 374 VRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRI-- 450 (465)
Q Consensus 374 I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p-- 450 (465)
|++||+.+++.+. +.+|...|.+++| +++.+++|+.||.|++||+.+++... .+.. +...|+++.|.+
T Consensus 278 i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~-~~~~------h~~~v~~~~~~~~~ 348 (435)
T 1p22_A 278 IKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLR-VLEG------HEELVRCIRFDNKR 348 (435)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEE-EECC------CSSCEEEEECCSSE
T ss_pred EEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEE-EEeC------CcCcEEEEEecCCE
Confidence 9999999887765 6779999999998 47799999999999999999875532 3322 335677776632
Q ss_pred --cCCcc-ceeeeec
Q 012367 451 --SKNYD-NFRRFQT 462 (465)
Q Consensus 451 --~gs~d-~~~~~~~ 462 (465)
.++.| .+++|+.
T Consensus 349 l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 349 IVSGAYDGKIKVWDL 363 (435)
T ss_dssp EEEEETTSCEEEEEH
T ss_pred EEEEeCCCcEEEEEC
Confidence 23444 4677764
No 119
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.87 E-value=1e-20 Score=183.33 Aligned_cols=207 Identities=12% Similarity=0.019 Sum_probs=142.9
Q ss_pred CCCcEEEEEECCC----CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367 221 HKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (465)
Q Consensus 221 H~~~I~~l~fspd----g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (465)
|.+.|++|+|+|+ ++++++++.+ +++|++.+++........ ....+. ++.
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g--------~d~~V~----------------~~~ 163 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTL--------SDQQVE----------------VMT 163 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEESSS--------TTCEEE----------------EEE
T ss_pred cccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEecccC--------CCCcEE----------------EEE
Confidence 5668999999999 9999999854 888998765544332110 011111 122
Q ss_pred e--cCCcceeeeccccceEEEEecC---C-CEEEEEeCCCeEEEEeCCCCeEeEEec-CC---CceEEEEEccCCCCEE-
Q 012367 297 I--EESPLQELHGHKGDVLDLAWSN---S-NYLLSCSMDKTVRMWQVGCNQCLNVFD-HH---NYVTCVQFNPIDDNYF- 365 (465)
Q Consensus 297 ~--~~~~~~~~~gh~~~V~~l~~s~---~-~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~---~~V~~i~fsp~~~~~l- 365 (465)
+ .++.+..+.+|...+..++|++ + ..|++++.|++|+|||+.++++++++. |+ ..|.+++|+| ++.++
T Consensus 164 ~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSp-dG~~lv 242 (356)
T 2w18_A 164 FAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSE-MGLLFI 242 (356)
T ss_dssp ECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEE-TTEEEE
T ss_pred ECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECC-CCCEEE
Confidence 2 1244566778999999999987 3 399999999999999999999999995 43 3678889999 88876
Q ss_pred -----------EEEeCCCcEEEEeCCCCeEEec------ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367 366 -----------ISGSIDGKVRIWGVCEKRVVDW------ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 428 (465)
Q Consensus 366 -----------~sgs~Dg~I~iwd~~~~~~~~~------~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~ 428 (465)
++|+.|++|++||..+++.+.. .+|...+.+. +.++..+++|+.||+|+|||+.+++...
T Consensus 243 s~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg--~~sg~~lASgS~DgTIkIWDl~tGk~l~- 319 (356)
T 2w18_A 243 VLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEG--DVKDHCAAAILTSGTIAIWDLLLGQCTA- 319 (356)
T ss_dssp EEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEE--EEETTEEEEEETTSCEEEEETTTCSEEE-
T ss_pred EeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcc--ccCCCEEEEEcCCCcEEEEECCCCcEEE-
Confidence 6788999999999999987642 2555554444 4448899999999999999999887532
Q ss_pred EeeecCcccccCCceeeEEEeecCCc------c-ceeeeec
Q 012367 429 KVDFHDRKKTSGNKITGIQGRISKNY------D-NFRRFQT 462 (465)
Q Consensus 429 ~~~~~~~~~~~~~~It~~~f~p~gs~------d-~~~~~~~ 462 (465)
.+..|. ...+..+.|+|+|.+ | ++++|+.
T Consensus 320 tL~gH~-----~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 320 LLPPVS-----DQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EECCC-------CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EecCCC-----CCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 332221 123446899998654 4 4788764
No 120
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.86 E-value=5.9e-21 Score=187.25 Aligned_cols=199 Identities=16% Similarity=0.164 Sum_probs=135.0
Q ss_pred hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEec-cCCCC-ceeEecCC-
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFG-KKKSS-HVPVVIPD- 292 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~- 292 (465)
..+.+|.+.|++++|+|++++|++|+.||.|++||+.+......... ...+ ..+.+. ..... ........
T Consensus 80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~v------~~~~~~~~~~~~~l~~~~~dg~ 152 (368)
T 3mmy_A 80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQH-DAPV------KTIHWIKAPNYSCVMTGSWDKT 152 (368)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-SSCE------EEEEEEECSSCEEEEEEETTSE
T ss_pred EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccc-cCce------EEEEEEeCCCCCEEEEccCCCc
Confidence 55678999999999999999999999999999999998765543221 1111 111110 01111 11111111
Q ss_pred -ceeeecCCcceeeeccccceEEEEecC------------------------------------------C-----CEEE
Q 012367 293 -EVFQIEESPLQELHGHKGDVLDLAWSN------------------------------------------S-----NYLL 324 (465)
Q Consensus 293 -~~~~~~~~~~~~~~gh~~~V~~l~~s~------------------------------------------~-----~~l~ 324 (465)
.+|++..........+...+.++.+.+ + ..++
T Consensus 153 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (368)
T 3mmy_A 153 LKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFA 232 (368)
T ss_dssp EEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEE
T ss_pred EEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEE
Confidence 123333333333333444433332211 0 1277
Q ss_pred EEeCCCeEEEEeCCCC---eEeEEec-CCC------------ceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-c
Q 012367 325 SCSMDKTVRMWQVGCN---QCLNVFD-HHN------------YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-W 387 (465)
Q Consensus 325 s~s~DgtV~lWD~~~~---~~l~~~~-h~~------------~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~ 387 (465)
+++.|+.|++||+... ..+..+. |.. .|++++|+| ++++|++|+.||.|++||+.+++.+. +
T Consensus 233 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 311 (368)
T 3mmy_A 233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDARTKLKTS 311 (368)
T ss_dssp EEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred EecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEec-CCCEEEEEccCCeEEEEECCCCcEEEEe
Confidence 8888888888888776 4445553 333 699999999 99999999999999999999987765 6
Q ss_pred ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367 388 ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG 422 (465)
Q Consensus 388 ~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~ 422 (465)
..|...|++++|+|+|++|++|+.|+..+.|++-.
T Consensus 312 ~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 312 EQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp CCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred cCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 78899999999999999999999998766666543
No 121
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=3.7e-20 Score=188.91 Aligned_cols=231 Identities=12% Similarity=0.015 Sum_probs=154.0
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEecCCce---eeeeeecCCCCcccccC----CCeEEeccCCC---C-ceeEe-
Q 012367 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA---ASCKSFTDDGGFGSNAK----EGKIKFGKKKS---S-HVPVV- 289 (465)
Q Consensus 222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---~-~~~~~- 289 (465)
..+|.+++|+|+|++|+++ .++.|++||+.++. ................. ........... . .....
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 4578999999999977666 47899999998877 44333322110000000 00000000000 0 00000
Q ss_pred -cCCceeeecCCcceeeeccccceEEEEecCCC-EE-EEEeCCCeEEEEeCC--CCeEeEEe---cCCCceEEEEEccCC
Q 012367 290 -IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVG--CNQCLNVF---DHHNYVTCVQFNPID 361 (465)
Q Consensus 290 -~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l-~s~s~DgtV~lWD~~--~~~~l~~~---~h~~~V~~i~fsp~~ 361 (465)
....... ...+.....+|.+.|.+++|+|++ +| ++++.|++|++||+. ++.++..+ .|...|++++|+| +
T Consensus 83 ~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~ 160 (450)
T 2vdu_B 83 SIKRTAAK-VPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-D 160 (450)
T ss_dssp ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-T
T ss_pred cccccCcc-ccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-C
Confidence 0000000 011223345788899999999986 54 899999999999999 88888777 4778999999999 9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEE-----ecccCCCCeEEEEEeeC---CCEEEEEEcCCcEEEEEecCCceeeeEeeec
Q 012367 362 DNYFISGSIDGKVRIWGVCEKRVV-----DWADVRDVISAICYIPD---GKGFIVGSITGTCHFYKASGNDLKLEKVDFH 433 (465)
Q Consensus 362 ~~~l~sgs~Dg~I~iwd~~~~~~~-----~~~~~~~~V~sv~~spd---g~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~ 433 (465)
+++|++|+.|+.|++|++.++... .+.+|...|++++|+|+ +++|++|+.||.|++||+.+++........
T Consensus 161 ~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~- 239 (450)
T 2vdu_B 161 DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG- 239 (450)
T ss_dssp SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC-
T ss_pred CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC-
Confidence 999999999999999999876644 46779999999999999 999999999999999999887653322211
Q ss_pred CcccccCCceeeEEEeecCCc------c-ceeeeec
Q 012367 434 DRKKTSGNKITGIQGRISKNY------D-NFRRFQT 462 (465)
Q Consensus 434 ~~~~~~~~~It~~~f~p~gs~------d-~~~~~~~ 462 (465)
+...|+++.|+ ++.+ | .+++|+.
T Consensus 240 -----h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~ 269 (450)
T 2vdu_B 240 -----HKHFVSSICCG-KDYLLLSAGGDDKIFAWDW 269 (450)
T ss_dssp -----CSSCEEEEEEC-STTEEEEEESSSEEEEEET
T ss_pred -----CCCceEEEEEC-CCCEEEEEeCCCeEEEEEC
Confidence 34678999988 6543 3 4677764
No 122
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.85 E-value=6.5e-20 Score=181.48 Aligned_cols=200 Identities=13% Similarity=0.125 Sum_probs=142.1
Q ss_pred CcEEEEEECCCCCEE-EEEeCCCcEEEEecCCceeeeeeecCCCCcc--------cccCCCeEEeccCCCC---------
Q 012367 223 GCIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFG--------SNAKEGKIKFGKKKSS--------- 284 (465)
Q Consensus 223 ~~I~~l~fspdg~~L-aSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~--------- 284 (465)
..+..+++.++++++ ++|+.|++|+|||+.++.............. .......+.++.....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 138 (355)
T 3vu4_A 59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR 138 (355)
T ss_dssp SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE
T ss_pred CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc
Confidence 358889999988877 5678889999999988776654432221100 0011112222211111
Q ss_pred ----------ceeEe--c-CC--ceeeecCC----------------c-ceeeeccccceEEEEecCCC-EEEEEeCCCe
Q 012367 285 ----------HVPVV--I-PD--EVFQIEES----------------P-LQELHGHKGDVLDLAWSNSN-YLLSCSMDKT 331 (465)
Q Consensus 285 ----------~~~~~--~-~~--~~~~~~~~----------------~-~~~~~gh~~~V~~l~~s~~~-~l~s~s~Dgt 331 (465)
...+. . .+ .+|++... + +..+.+|.+.|.+++|+|++ +|++|+.|++
T Consensus 139 ~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~ 218 (355)
T 3vu4_A 139 FGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGT 218 (355)
T ss_dssp EEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCS
T ss_pred CCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCC
Confidence 00110 1 11 13343321 2 78899999999999999986 8999999998
Q ss_pred -EEEEeCCCCeEeEEec---CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe---c-----------------
Q 012367 332 -VRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD---W----------------- 387 (465)
Q Consensus 332 -V~lWD~~~~~~l~~~~---h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~---~----------------- 387 (465)
|++||+.+++++..+. |...|++++|+| ++++|++|+.|++|+|||+....... +
T Consensus 219 ~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~-~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (355)
T 3vu4_A 219 IIRVFKTEDGVLVREFRRGLDRADVVDMKWST-DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCN 297 (355)
T ss_dssp EEEEEETTTCCEEEEEECTTCCSCEEEEEECT-TSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEE
T ss_pred EEEEEECCCCcEEEEEEcCCCCCcEEEEEECC-CCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeE
Confidence 9999999999999996 889999999999 99999999999999999997643111 0
Q ss_pred ----ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367 388 ----ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN 423 (465)
Q Consensus 388 ----~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~ 423 (465)
.........++|+|+|+.|++++.||.+++|++..+
T Consensus 298 ~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 298 FKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp EECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred EEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 011223477999999999999999999999998753
No 123
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.84 E-value=1.4e-18 Score=172.92 Aligned_cols=230 Identities=14% Similarity=0.138 Sum_probs=164.0
Q ss_pred hhhhccCCCcEEEEEECCCCCEE-EEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC-C
Q 012367 215 SQEIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP-D 292 (465)
Q Consensus 215 ~~~l~~H~~~I~~l~fspdg~~L-aSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 292 (465)
.+.+.+|. .+.+++|+|+|++| ++++.|++|++||+.+++........... ..+.+...+......... .
T Consensus 25 ~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v-------~~~~~spdg~~l~~~~~~~~ 96 (391)
T 1l0q_A 25 TATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSP-------QGVAVSPDGKQVYVTNMASS 96 (391)
T ss_dssp EEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSE-------EEEEECTTSSEEEEEETTTT
T ss_pred EEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCc-------cceEECCCCCEEEEEECCCC
Confidence 34555665 48999999999976 67779999999999988776554433211 111111111111111111 1
Q ss_pred c--eeeecC-CcceeeeccccceEEEEecCCC-EE-EEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEE-E
Q 012367 293 E--VFQIEE-SPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYF-I 366 (465)
Q Consensus 293 ~--~~~~~~-~~~~~~~gh~~~V~~l~~s~~~-~l-~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l-~ 366 (465)
. +|++.. +.+..+. +...+.+++|+|++ .| ++++.|+.|++||+.+++++..+.+...+.+++|+| +++++ +
T Consensus 97 ~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~ 174 (391)
T 1l0q_A 97 TLSVIDTTSNTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTP-DGTKVYV 174 (391)
T ss_dssp EEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECT-TSSEEEE
T ss_pred EEEEEECCCCeEEEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECC-CCCEEEE
Confidence 1 223322 2333444 44578999999986 45 788889999999999999999998778889999999 88776 6
Q ss_pred EEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEE---cCCcEEEEEecCCceeeeEeeecCcccccCCce
Q 012367 367 SGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS---ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI 443 (465)
Q Consensus 367 sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs---~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~I 443 (465)
+++.++.|++||+.+++......+...+.+++|+|+|+.|++++ .++.|++||+.+++.. ..+..+ ..+
T Consensus 175 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~-------~~~ 246 (391)
T 1l0q_A 175 ANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT-ARIPVG-------PDP 246 (391)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE-EEEECC-------SSE
T ss_pred EeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE-EEEecC-------CCc
Confidence 77889999999999998888777788999999999999999988 6899999999887542 233222 246
Q ss_pred eeEEEeecCCc-------c-ceeeeec
Q 012367 444 TGIQGRISKNY-------D-NFRRFQT 462 (465)
Q Consensus 444 t~~~f~p~gs~-------d-~~~~~~~ 462 (465)
.++.|+|++.+ | .+++|+.
T Consensus 247 ~~~~~s~dg~~l~~s~~~d~~v~v~d~ 273 (391)
T 1l0q_A 247 AGIAVTPDGKKVYVALSFXNTVSVIDT 273 (391)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred cEEEEccCCCEEEEEcCCCCEEEEEEC
Confidence 78888887643 2 3666664
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.82 E-value=6.7e-19 Score=177.70 Aligned_cols=183 Identities=9% Similarity=0.057 Sum_probs=153.8
Q ss_pred hhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (465)
Q Consensus 217 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (465)
.+.+|.+.|++++|+|+++++++++.|+.|++||+.+..
T Consensus 164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~----------------------------------------- 202 (433)
T 3bws_A 164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA----------------------------------------- 202 (433)
T ss_dssp HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC-----------------------------------------
T ss_pred cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce-----------------------------------------
Confidence 567999999999999999999999999999999997642
Q ss_pred ecCCcceeeeccccceEEEEecCCC-EE-EEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEe-----
Q 012367 297 IEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS----- 369 (465)
Q Consensus 297 ~~~~~~~~~~gh~~~V~~l~~s~~~-~l-~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs----- 369 (465)
.+..+..|...+.+++|+|++ .+ ++++.|++|++||+.+++.+..+.+...+.+++|+| +++++++++
T Consensus 203 ----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~ 277 (433)
T 3bws_A 203 ----YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSK-DGKELYIAQFSASN 277 (433)
T ss_dssp ----EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECT-TSSEEEEEEEESCT
T ss_pred ----EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcC-CCCEEEEEECCCCc
Confidence 344555788899999999975 45 566689999999999999999998888899999999 999998888
Q ss_pred ---CCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEE-EEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceee
Q 012367 370 ---IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 445 (465)
Q Consensus 370 ---~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l-~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~ 445 (465)
.|+.|++||+.+++.+....+...+.+++|+|+++.+ ++++.+|.|++||+.+++... .+. ....+.+
T Consensus 278 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~-~~~-------~~~~~~~ 349 (433)
T 3bws_A 278 QESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQK-SIP-------VFDKPNT 349 (433)
T ss_dssp TCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEE-EEE-------CSSSEEE
T ss_pred cccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEE-Eec-------CCCCCCe
Confidence 4889999999999888877777789999999999755 566889999999999776532 222 2346788
Q ss_pred EEEeecCC
Q 012367 446 IQGRISKN 453 (465)
Q Consensus 446 ~~f~p~gs 453 (465)
+.|+|+|.
T Consensus 350 ~~~s~dg~ 357 (433)
T 3bws_A 350 IALSPDGK 357 (433)
T ss_dssp EEECTTSS
T ss_pred EEEcCCCC
Confidence 89988875
No 125
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.80 E-value=7.1e-19 Score=179.00 Aligned_cols=169 Identities=18% Similarity=0.145 Sum_probs=129.1
Q ss_pred cCCCcEEEEEECCCCCEEE----EEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367 220 AHKGCIWTLKFSPDGRYLA----SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~La----Sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (465)
.|.+.|++++|+|+|++|| +|+.|++|+|||+.+...... .. ..
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~-----~~-------------------------~~-- 137 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAK-----QQ-------------------------KR-- 137 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTC-----SS-------------------------CC--
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCc-----CC-------------------------cc--
Confidence 5788999999999999999 889999999999875310000 00 00
Q ss_pred eecCCcceeeeccccceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCC
Q 012367 296 QIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG 372 (465)
Q Consensus 296 ~~~~~~~~~~~gh~~~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg 372 (465)
....+..+.+|...|.+++|+|+ .+|++++.||+|++||++++..+... .|...|++++|+| ++++|++|+.||
T Consensus 138 --~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg 214 (434)
T 2oit_A 138 --PFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSP-KGKQLAVGKQNG 214 (434)
T ss_dssp --CSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECT-TSSCEEEEETTS
T ss_pred --eeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcC-CCCEEEEEcCCC
Confidence 00113455689999999999996 48999999999999999998765444 5888999999999 899999999999
Q ss_pred cEEEEeCCCCeEEeccc-------CCCCeEEEEEeeCCCEEEEEE-cCCc------EEEEEecCC
Q 012367 373 KVRIWGVCEKRVVDWAD-------VRDVISAICYIPDGKGFIVGS-ITGT------CHFYKASGN 423 (465)
Q Consensus 373 ~I~iwd~~~~~~~~~~~-------~~~~V~sv~~spdg~~l~sgs-~dG~------v~iwd~~~~ 423 (465)
+|++||++......+.. |...|.+++|++++.++++.+ .+|. +++|++...
T Consensus 215 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 215 TVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp CEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred cEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 99999998333322222 233799999999987775533 4433 899999865
No 126
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.79 E-value=4.1e-19 Score=180.76 Aligned_cols=201 Identities=18% Similarity=0.179 Sum_probs=141.7
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (465)
+...++.+++++++.++++|+.|+ |+||+....... ..... ...... ...
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~---~~~~~------~~~~~~--------------------~~~ 84 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQ---NKPGD------DPNKIV--------------------DKV 84 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCC---CCTTC------CTTCEE--------------------ECC
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhh---ccccc------Cccccc--------------------ccC
Confidence 344689999999999999999998 999886532110 00000 000000 001
Q ss_pred cceeeeccccceEEEEecCCC-EEE----EEeCCCeEEEEeCCCC--------eE---eEEe-cCCCceEEEEEccCCCC
Q 012367 301 PLQELHGHKGDVLDLAWSNSN-YLL----SCSMDKTVRMWQVGCN--------QC---LNVF-DHHNYVTCVQFNPIDDN 363 (465)
Q Consensus 301 ~~~~~~gh~~~V~~l~~s~~~-~l~----s~s~DgtV~lWD~~~~--------~~---l~~~-~h~~~V~~i~fsp~~~~ 363 (465)
+... ..|...|.+++|+|++ +|+ +++.|++|+|||+.++ +. +..+ .|...|++++|+|.+++
T Consensus 85 ~~~~-~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~ 163 (434)
T 2oit_A 85 QGLL-VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS 163 (434)
T ss_dssp CCEE-ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT
T ss_pred cccc-ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC
Confidence 1111 2467789999999975 677 7888999999998654 22 2333 37889999999994489
Q ss_pred EEEEEeCCCcEEEEeCCCCeEE-ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCccc-ccCC
Q 012367 364 YFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK-TSGN 441 (465)
Q Consensus 364 ~l~sgs~Dg~I~iwd~~~~~~~-~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~-~~~~ 441 (465)
+|++++.||+|++||++++... ...+|...|++++|+|+|++|++|+.||+|++||++ ++.. ..+..+.... .+..
T Consensus 164 ~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~-~~~~~~~~~~~~~~~ 241 (434)
T 2oit_A 164 MVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEK-KVIPCPPFYESDHPV 241 (434)
T ss_dssp EEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEE-EEECCCTTCCTTSCE
T ss_pred EEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccc-ccccCCcccCCCCce
Confidence 9999999999999999987654 356688899999999999999999999999999998 3222 2232222111 1234
Q ss_pred ceeeEEEeecCCc
Q 012367 442 KITGIQGRISKNY 454 (465)
Q Consensus 442 ~It~~~f~p~gs~ 454 (465)
.+.++.|++++.+
T Consensus 242 ~v~~v~w~~~~~~ 254 (434)
T 2oit_A 242 RVLDVLWIGTYVF 254 (434)
T ss_dssp EEEEEEEEETTEE
T ss_pred eEEEEEEecCceE
Confidence 7888888876544
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.79 E-value=2.4e-17 Score=166.67 Aligned_cols=223 Identities=11% Similarity=0.059 Sum_probs=161.1
Q ss_pred hhhhccCCCcEEEEEECCCCCEEEEEeCCC---cEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDG---VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (465)
Q Consensus 215 ~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg---~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (465)
.+.+.+|.+.|.+++|+|+|++||+++.|+ .|++||+.++...... ...... ....+...+.........
T Consensus 171 ~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~-~~~~~~------~~~~~spdg~~la~~~~~ 243 (415)
T 2hqs_A 171 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHN------GAPAFSPDGSKLAFALSK 243 (415)
T ss_dssp CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE-CCSSCE------EEEEECTTSSEEEEEECT
T ss_pred CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEee-cCCCcc------cCEEEcCCCCEEEEEEec
Confidence 456778999999999999999999999886 9999999987654322 111111 111121111111111111
Q ss_pred ---Cce--eeecCCcceeeeccccceEEEEecCCC-EEEEEeC-CC--eEEEEeCCCCeEeEEecCCCceEEEEEccCCC
Q 012367 292 ---DEV--FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM-DK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDD 362 (465)
Q Consensus 292 ---~~~--~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~-Dg--tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~ 362 (465)
..+ +++.......+..|...+.+++|+|++ +|++++. ++ .|.+||+.+++......+...+.+++|+| ++
T Consensus 244 ~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~sp-dG 322 (415)
T 2hqs_A 244 TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSS-DG 322 (415)
T ss_dssp TSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECT-TS
T ss_pred CCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECC-CC
Confidence 112 333444556778899999999999986 6777765 44 68888998887654445778899999999 99
Q ss_pred CEEEEEeCC---CcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCC---cEEEEEecCCceeeeEeeecCcc
Q 012367 363 NYFISGSID---GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG---TCHFYKASGNDLKLEKVDFHDRK 436 (465)
Q Consensus 363 ~~l~sgs~D---g~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG---~v~iwd~~~~~~~~~~~~~~~~~ 436 (465)
++|++++.+ ..|++||+.+++...+..+. .+.+++|+|||+.|++++.++ .|++||+.++... .+..
T Consensus 323 ~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~--~l~~---- 395 (415)
T 2hqs_A 323 KFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA--RLPA---- 395 (415)
T ss_dssp SEEEEEEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEE--ECCC----
T ss_pred CEEEEEECcCCceEEEEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEE--EeeC----
Confidence 999988865 58999999998887766665 899999999999999998877 7999999866442 2222
Q ss_pred cccCCceeeEEEeecCCc
Q 012367 437 KTSGNKITGIQGRISKNY 454 (465)
Q Consensus 437 ~~~~~~It~~~f~p~gs~ 454 (465)
+...|.+++|+|--.|
T Consensus 396 --~~~~v~~~~~~~~~~~ 411 (415)
T 2hqs_A 396 --TDGQVKFPAWSPYLHH 411 (415)
T ss_dssp --SSSEEEEEEECCCCCC
T ss_pred --CCCCCcCCcccccccc
Confidence 3368999999997665
No 128
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.79 E-value=2.1e-17 Score=166.67 Aligned_cols=202 Identities=10% Similarity=0.136 Sum_probs=148.6
Q ss_pred cchhhhccCCCcEEEEEECCCCCEEE-EEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec-
Q 012367 213 YTSQEIQAHKGCIWTLKFSPDGRYLA-SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI- 290 (465)
Q Consensus 213 ~~~~~l~~H~~~I~~l~fspdg~~La-Sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 290 (465)
.....+..|...+.+++|+|++++++ +++.|+.|++||+.++........... ...+.+...+........
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-------~~~~~~~~~g~~l~~~~~~ 274 (433)
T 3bws_A 202 AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGL-------PRGLLLSKDGKELYIAQFS 274 (433)
T ss_dssp CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSE-------EEEEEECTTSSEEEEEEEE
T ss_pred eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCC-------ceEEEEcCCCCEEEEEECC
Confidence 34455668999999999999999885 555899999999988765443322111 011111111111111110
Q ss_pred -------CC--ceeeecCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEcc
Q 012367 291 -------PD--EVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNP 359 (465)
Q Consensus 291 -------~~--~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp 359 (465)
.+ .+|++..........|...+.+++|+|++ ++++++.|+.|++||+.+++.+..+.+...+.+++|+|
T Consensus 275 ~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~ 354 (433)
T 3bws_A 275 ASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSP 354 (433)
T ss_dssp SCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECT
T ss_pred CCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcC
Confidence 00 13443333333444677789999999986 55677999999999999999999999889999999999
Q ss_pred CCCCEEEEEeC---------------CCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecC
Q 012367 360 IDDNYFISGSI---------------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASG 422 (465)
Q Consensus 360 ~~~~~l~sgs~---------------Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~ 422 (465)
+++++++++. ||.|++||+.+++.+........+.+++|+|+|++|++++. ||.|++|++.+
T Consensus 355 -dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 355 -DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp -TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred -CCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 9998888876 57999999999988876666778999999999999998875 99999999864
No 129
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.78 E-value=1.1e-16 Score=159.06 Aligned_cols=202 Identities=13% Similarity=0.147 Sum_probs=144.6
Q ss_pred hhhccCCCcEEEEEECCCCCEEE-EEeCCCcEEEEecCCceeeeeeecCCCCccc-ccCCC-eEEeccCCCCceeEecCC
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYLA-SGGEDGVVRIWHVTSVAASCKSFTDDGGFGS-NAKEG-KIKFGKKKSSHVPVVIPD 292 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~La-Sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~ 292 (465)
+.+..|. .|.+++|+|+|++|+ +++.|+.|++||+.++............... ....+ .+.+.........
T Consensus 68 ~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~----- 141 (391)
T 1l0q_A 68 ATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVS----- 141 (391)
T ss_dssp EEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEE-----
T ss_pred EEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEE-----
Confidence 4444444 899999999999875 4556799999999987765544432211100 00111 1111111111111
Q ss_pred ceeeec-CCcceeeeccccceEEEEecCCC-EE-EEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEe
Q 012367 293 EVFQIE-ESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS 369 (465)
Q Consensus 293 ~~~~~~-~~~~~~~~gh~~~V~~l~~s~~~-~l-~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs 369 (465)
+|++. .+.+..+..| ..+.+++|+|++ +| ++++.|++|++||+.+++++..+.+...+.+++|+| +++++++++
T Consensus 142 -~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~ 218 (391)
T 1l0q_A 142 -VINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNP-EGTKAYVTN 218 (391)
T ss_dssp -EEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECT-TSSEEEEEE
T ss_pred -EEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECC-CCCEEEEEe
Confidence 22222 2334445444 567999999986 55 678889999999999999999998888999999999 898888887
Q ss_pred ---CCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEE-EEEEcCCcEEEEEecCCcee
Q 012367 370 ---IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLK 426 (465)
Q Consensus 370 ---~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l-~sgs~dG~v~iwd~~~~~~~ 426 (465)
.++.|++||+.+++.+........+.+++|+|+|+.| ++++.||.|++||+.+++..
T Consensus 219 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~ 279 (391)
T 1l0q_A 219 VDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTIT 279 (391)
T ss_dssp ECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred cCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEE
Confidence 6899999999998877755555678999999999987 56678999999999987653
No 130
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.75 E-value=2.3e-16 Score=149.17 Aligned_cols=225 Identities=10% Similarity=0.068 Sum_probs=152.1
Q ss_pred hhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCC-ceeeeeeecCCCCcccccCCCeEEeccCCCCceeEe----cC
Q 012367 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS-VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV----IP 291 (465)
Q Consensus 217 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 291 (465)
.+..|.+.|.+++|+|+|++|++++ ++.|.+||+.+ +............ ....+.+........... ..
T Consensus 36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~spdg~~l~~~~~~~~~~ 109 (297)
T 2ojh_A 36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATI-----CNNDHGISPDGALYAISDKVEFGK 109 (297)
T ss_dssp EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCC-----BCSCCEECTTSSEEEEEECTTTSS
T ss_pred eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccc-----cccceEECCCCCEEEEEEeCCCCc
Confidence 3457899999999999999999987 78999999988 6544332221100 011112221111111111 01
Q ss_pred Cceeee--cCCcceeeeccccceEEEEecCCC-EEE-EEeCCCeEEEEeC--CCCeEeEEecCCCceEEEEEccCCCCEE
Q 012367 292 DEVFQI--EESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDKTVRMWQV--GCNQCLNVFDHHNYVTCVQFNPIDDNYF 365 (465)
Q Consensus 292 ~~~~~~--~~~~~~~~~gh~~~V~~l~~s~~~-~l~-s~s~DgtV~lWD~--~~~~~l~~~~h~~~V~~i~fsp~~~~~l 365 (465)
..++.+ .......+..+. .+..++|+|++ +|+ +++.|+.++||++ .++.......+...+.+++|+| +++++
T Consensus 110 ~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l 187 (297)
T 2ojh_A 110 SAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSP-DGRWI 187 (297)
T ss_dssp CEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECT-TSSEE
T ss_pred ceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECC-CCCEE
Confidence 233333 223344444443 48899999986 454 7888999999985 4555544446788999999999 88887
Q ss_pred EEEe-CCCcEEEEeCC--CCeEEecccCCCCeEEEEEeeCCCEEEEEEcC-----------CcEEEEEecCCceeee-Ee
Q 012367 366 ISGS-IDGKVRIWGVC--EKRVVDWADVRDVISAICYIPDGKGFIVGSIT-----------GTCHFYKASGNDLKLE-KV 430 (465)
Q Consensus 366 ~sgs-~Dg~I~iwd~~--~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~d-----------G~v~iwd~~~~~~~~~-~~ 430 (465)
+.++ .++.++||++. .+....+..+...+.+++|+|+|++|++++.+ +.|.+||+.+++.... ..
T Consensus 188 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 267 (297)
T 2ojh_A 188 YFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDL 267 (297)
T ss_dssp EEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEE
T ss_pred EEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeecc
Confidence 7666 58999999874 45566677778889999999999999988876 5699999988765432 22
Q ss_pred eecCcccccCCceeeEEEeecCCcc
Q 012367 431 DFHDRKKTSGNKITGIQGRISKNYD 455 (465)
Q Consensus 431 ~~~~~~~~~~~~It~~~f~p~gs~d 455 (465)
.. +...+..+.|+|++.+-
T Consensus 268 ~~------~~~~~~~~~~spdg~~l 286 (297)
T 2ojh_A 268 FG------GQGTMNSPNWSPDGDEF 286 (297)
T ss_dssp EE------STTTSCSCCBCTTSSEE
T ss_pred CC------CCcccccceECCCCCEE
Confidence 22 23468888999988653
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.73 E-value=4.4e-17 Score=164.70 Aligned_cols=184 Identities=12% Similarity=0.148 Sum_probs=144.6
Q ss_pred hhhccCCCcEEEEEECC--------------CCCEEEEEeCC------CcEEEEecCCceeeeeeecCCCCcccccCCCe
Q 012367 216 QEIQAHKGCIWTLKFSP--------------DGRYLASGGED------GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 275 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fsp--------------dg~~LaSgs~D------g~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (465)
..+.+|...++.+++++ .+..++.++.+ +.|++||+...
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~--------------------- 169 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY--------------------- 169 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC---------------------
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC---------------------
Confidence 34667777777777664 25667766654 79999998742
Q ss_pred EEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCC---eEEEEeCCCCeEeEEecCCCc
Q 012367 276 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDK---TVRMWQVGCNQCLNVFDHHNY 351 (465)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~Dg---tV~lWD~~~~~~l~~~~h~~~ 351 (465)
....+.+|...|.+++|+|++ +|++++.|+ +|++||+.++++.....|...
T Consensus 170 -------------------------~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~ 224 (415)
T 2hqs_A 170 -------------------------NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH 224 (415)
T ss_dssp -------------------------SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSC
T ss_pred -------------------------CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCc
Confidence 245566788999999999986 888888885 999999999998776678889
Q ss_pred eEEEEEccCCCCEEE-EEeCCCc--EEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEc-CC--cEEEEEecCCce
Q 012367 352 VTCVQFNPIDDNYFI-SGSIDGK--VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDL 425 (465)
Q Consensus 352 V~~i~fsp~~~~~l~-sgs~Dg~--I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~-dG--~v~iwd~~~~~~ 425 (465)
+.+++|+| ++++|+ +++.++. |++||+.+++...+..|...+.+++|+|||+.|++++. +| .|.+||+.+++.
T Consensus 225 ~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~ 303 (415)
T 2hqs_A 225 NGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP 303 (415)
T ss_dssp EEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC
T ss_pred ccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE
Confidence 99999999 998777 6666655 99999999988888888899999999999999998886 45 567778877653
Q ss_pred eeeEeeecCcccccCCceeeEEEeecCCc
Q 012367 426 KLEKVDFHDRKKTSGNKITGIQGRISKNY 454 (465)
Q Consensus 426 ~~~~~~~~~~~~~~~~~It~~~f~p~gs~ 454 (465)
. .+..+ ...+..+.|+|+|.+
T Consensus 304 ~--~l~~~------~~~~~~~~~spdG~~ 324 (415)
T 2hqs_A 304 Q--RITWE------GSQNQDADVSSDGKF 324 (415)
T ss_dssp E--ECCCS------SSEEEEEEECTTSSE
T ss_pred E--EEecC------CCcccCeEECCCCCE
Confidence 2 22222 356788999998865
No 132
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.68 E-value=2.5e-15 Score=145.77 Aligned_cols=190 Identities=11% Similarity=0.116 Sum_probs=134.5
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCC-CcEEEEecC--CceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGED-GVVRIWHVT--SVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~D-g~V~iWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (465)
.|...+.+++|+|+|++|++++.+ +.|++|++. ++...
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~--------------------------------------- 75 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT--------------------------------------- 75 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE---------------------------------------
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCcee---------------------------------------
Confidence 577889999999999999999887 999999987 32111
Q ss_pred ecCCcceeeeccccceEEEEecCCC-EEEEEe-CCCeEEEEeC---CCCeEeEEecCCCceEEEEEccCCCCEEEEEe-C
Q 012367 297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQV---GCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS-I 370 (465)
Q Consensus 297 ~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s-~DgtV~lWD~---~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs-~ 370 (465)
.+..+..+. .+..++|+|++ +|++++ .++.|.+||+ .....+..+.....+.+++|+| +++++++++ .
T Consensus 76 ----~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~ 149 (343)
T 1ri6_A 76 ----FAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALK 149 (343)
T ss_dssp ----EEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGG
T ss_pred ----eccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECC-CCCEEEEecCC
Confidence 122222233 77899999986 565554 5899999999 4445666666667799999999 888888777 8
Q ss_pred CCcEEEEeCCC-CeEEe------cccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecC--Cceeee-EeeecCccccc
Q 012367 371 DGKVRIWGVCE-KRVVD------WADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASG--NDLKLE-KVDFHDRKKTS 439 (465)
Q Consensus 371 Dg~I~iwd~~~-~~~~~------~~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~--~~~~~~-~~~~~~~~~~~ 439 (465)
++.|++||+.+ +++.. .......+..++|+|+|+++++++ .++.|.+|++.. +.+... .+.........
T Consensus 150 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~ 229 (343)
T 1ri6_A 150 QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSD 229 (343)
T ss_dssp GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCS
T ss_pred CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccc
Confidence 99999999987 65432 222345788999999999776665 789999999964 433322 22111111112
Q ss_pred CCceeeEEEeecCCc
Q 012367 440 GNKITGIQGRISKNY 454 (465)
Q Consensus 440 ~~~It~~~f~p~gs~ 454 (465)
...+.++.|+|+|.+
T Consensus 230 ~~~~~~i~~s~dg~~ 244 (343)
T 1ri6_A 230 TRWAADIHITPDGRH 244 (343)
T ss_dssp CCCEEEEEECTTSSE
T ss_pred cCCccceEECCCCCE
Confidence 345678899988753
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.62 E-value=2e-14 Score=155.36 Aligned_cols=225 Identities=10% Similarity=0.042 Sum_probs=149.3
Q ss_pred CCcEEEEEECCCCCEEEEEeC-CC-----cEEEEecCCceeeeeeecCCCC----cccc--------------cCCCeEE
Q 012367 222 KGCIWTLKFSPDGRYLASGGE-DG-----VVRIWHVTSVAASCKSFTDDGG----FGSN--------------AKEGKIK 277 (465)
Q Consensus 222 ~~~I~~l~fspdg~~LaSgs~-Dg-----~V~iWd~~~~~~~~~~~~~~~~----~~~~--------------~~~~~~~ 277 (465)
...|++++|||||++||+++. |+ .|++||+.++............ .... .....+.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 557999999999999999998 88 9999999887654333221110 0000 0011122
Q ss_pred eccCCCCceeEecCCce--eeecCC---cceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecC-CC
Q 012367 278 FGKKKSSHVPVVIPDEV--FQIEES---PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDH-HN 350 (465)
Q Consensus 278 ~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h-~~ 350 (465)
+...+....... ...+ +++... ....+..|...+.+++|+|++ +|++++ ++.|++||+.+++....... ..
T Consensus 116 ~SpDg~~l~~~~-~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~ 193 (741)
T 2ecf_A 116 WSPDAQRLLFPL-GGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGST 193 (741)
T ss_dssp ECTTSSEEEEEE-TTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred ECCCCCEEEEEe-CCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence 222221111111 1222 333444 566677888899999999987 566665 56999999999887665532 22
Q ss_pred c----------------eEEEEEccCCCCEEEEEeCCC---------------------------------cEEEEeCCC
Q 012367 351 Y----------------VTCVQFNPIDDNYFISGSIDG---------------------------------KVRIWGVCE 381 (465)
Q Consensus 351 ~----------------V~~i~fsp~~~~~l~sgs~Dg---------------------------------~I~iwd~~~ 381 (465)
. +..++|+| ++++|++++.|+ .|++||+.+
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 272 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE 272 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred ceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence 2 47899999 999999988776 899999988
Q ss_pred -CeEEecc---cCCCCeEEEEEeeCCCEEEEEEc-----CCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC
Q 012367 382 -KRVVDWA---DVRDVISAICYIPDGKGFIVGSI-----TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK 452 (465)
Q Consensus 382 -~~~~~~~---~~~~~V~sv~~spdg~~l~sgs~-----dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g 452 (465)
++..... .+...+.+++| |||+.|++++. ++.|++||+.+++.... +..+.. .....+.++.|+|+|
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~~~~~--~~~~~~~~~~~spdg 348 (741)
T 2ecf_A 273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVL-AHETSP--TWVPLHNSLRFLDDG 348 (741)
T ss_dssp TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEE-EEEECS--SCCCCCSCCEECTTS
T ss_pred CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEE-EEcCCC--CcCCcCCceEECCCC
Confidence 7765533 46778999999 99999998765 56899999998765432 111110 011134577888876
Q ss_pred C
Q 012367 453 N 453 (465)
Q Consensus 453 s 453 (465)
.
T Consensus 349 ~ 349 (741)
T 2ecf_A 349 S 349 (741)
T ss_dssp C
T ss_pred e
Confidence 4
No 134
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.62 E-value=4.3e-15 Score=156.40 Aligned_cols=195 Identities=8% Similarity=-0.015 Sum_probs=130.7
Q ss_pred CCCcEEEEEECCCCCEEEEEeC-CCcEEEEecCCceeeeeeecCCCCccc-ccCCCeEEeccCC---CCceeEecCCcee
Q 012367 221 HKGCIWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGS-NAKEGKIKFGKKK---SSHVPVVIPDEVF 295 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaSgs~-Dg~V~iWd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~ 295 (465)
+..+|++++|+|||++||+++. ||+++||++.++............... ......+.+.... .... .+|
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~------~l~ 93 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQH------ALF 93 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCE------EEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcce------EEE
Confidence 3567999999999999999987 999999998665543322111111111 0001122221111 0000 111
Q ss_pred ee----cCCcceeeeccccceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEe
Q 012367 296 QI----EESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS 369 (465)
Q Consensus 296 ~~----~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs 369 (465)
.+ ..... .+..+ ..+...+|+|++ .+++++.++.+.+||+.++++.....+.. .+++|+| +|+++++++
T Consensus 94 ~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~sp-DG~~la~~~ 168 (582)
T 3o4h_A 94 KVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDI-RGDLIAGLG 168 (582)
T ss_dssp EEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEE-ETTEEEEEE
T ss_pred EEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECC-CCCEEEEEE
Confidence 11 11111 22211 123345666654 45555555555599999998777665554 8899999 999999888
Q ss_pred CC----CcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCC--cEEEEEecCCcee
Q 012367 370 ID----GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG--TCHFYKASGNDLK 426 (465)
Q Consensus 370 ~D----g~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG--~v~iwd~~~~~~~ 426 (465)
.+ +.|++||+.+++...+..+...+..++|+|||+.|+++..+| .|++||+.+++..
T Consensus 169 ~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 169 FFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp EEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred EcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence 77 789999999998888888989999999999999999888888 8999999987765
No 135
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.61 E-value=2.7e-14 Score=149.27 Aligned_cols=230 Identities=13% Similarity=0.142 Sum_probs=146.1
Q ss_pred cccchhhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEec--CCceeeeeeecCCCCccc-ccC----CCe-EEeccCC
Q 012367 211 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHV--TSVAASCKSFTDDGGFGS-NAK----EGK-IKFGKKK 282 (465)
Q Consensus 211 ~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~--~~~~~~~~~~~~~~~~~~-~~~----~~~-~~~~~~~ 282 (465)
...+.+++..+.. +.+++|+|+|++|++++.|++|++||+ .+................ ... .+. +......
T Consensus 168 t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~ 246 (543)
T 1nir_A 168 SKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYW 246 (543)
T ss_dssp TCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred CceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEcc
Confidence 3344556653333 899999999999999999999999999 676655443321111100 011 111 1111111
Q ss_pred CCceeEecCCceeeecCCcceeeec----------ccc-ceEEEEecCCC--EEEEEeCCCeEEEEeCCCCeEeE--Eec
Q 012367 283 SSHVPVVIPDEVFQIEESPLQELHG----------HKG-DVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLN--VFD 347 (465)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~g----------h~~-~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~~l~--~~~ 347 (465)
.....++... ..+++..+.. |.. .+..+.++|++ ++++...+++|.+||+.+.+.+. .+.
T Consensus 247 ~~~v~v~D~~-----t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~ 321 (543)
T 1nir_A 247 PPQFAIMDGE-----TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG 321 (543)
T ss_dssp SSEEEEEETT-----TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE
T ss_pred CCeEEEEecc-----ccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec
Confidence 1111111111 1233444433 333 78899999864 67788889999999998876554 556
Q ss_pred CCCceEEEEEccCCCCEEEEEe-CCCcEEEEeCCCCeEEeccc-----CCCCeEEEEEeeC-CCEEEEEE-cCCcEEEEE
Q 012367 348 HHNYVTCVQFNPIDDNYFISGS-IDGKVRIWGVCEKRVVDWAD-----VRDVISAICYIPD-GKGFIVGS-ITGTCHFYK 419 (465)
Q Consensus 348 h~~~V~~i~fsp~~~~~l~sgs-~Dg~I~iwd~~~~~~~~~~~-----~~~~V~sv~~spd-g~~l~sgs-~dG~v~iwd 419 (465)
+...+..+.|+| ++++|++++ .+++|.+||+.+++++.... |......+ ++|+ |..++++. .|++|.+||
T Consensus 322 ~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d 399 (543)
T 1nir_A 322 AAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIG 399 (543)
T ss_dssp CCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEE
T ss_pred cCcCccCceECC-CCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEE
Confidence 777899999999 999776554 58999999999998876332 44444443 5787 55566665 589999999
Q ss_pred ecCCc-----e-eeeEeeecCcccccCCceeeEEEeecCCc
Q 012367 420 ASGND-----L-KLEKVDFHDRKKTSGNKITGIQGRISKNY 454 (465)
Q Consensus 420 ~~~~~-----~-~~~~~~~~~~~~~~~~~It~~~f~p~gs~ 454 (465)
+.+.+ . .+..+..++ ..+..+.|+|++.+
T Consensus 400 ~~~~~~~~~~~~~v~~l~~~g------~~~~~v~~~pdg~~ 434 (543)
T 1nir_A 400 TDPKNHPQYAWKKVAELQGQG------GGSLFIKTHPKSSH 434 (543)
T ss_dssp CCTTTCTTTBTSEEEEEECSC------SCCCCEECCTTCCE
T ss_pred eCCCCCchhcCeEEEEEEcCC------CCceEEEcCCCCCc
Confidence 98721 1 223444443 45667778887644
No 136
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.60 E-value=1.2e-13 Score=133.94 Aligned_cols=186 Identities=10% Similarity=0.120 Sum_probs=133.0
Q ss_pred hhhccCCCcEEEEEECCCCCEEEEEeC-CCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~LaSgs~-Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (465)
..+..+...+ +++|+|+|++|++++. ++.|.+||+.++...
T Consensus 34 ~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~------------------------------------- 75 (331)
T 3u4y_A 34 NQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK------------------------------------- 75 (331)
T ss_dssp EEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE-------------------------------------
T ss_pred eeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee-------------------------------------
Confidence 3344456667 9999999997766665 899999999864320
Q ss_pred eeecCCcceeeeccccceEEEEecCCC-EEEEEeCCC---eEEEEeCCCCeEeEEecCCCceEEEEEccCCCC-EEEEEe
Q 012367 295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDK---TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDN-YFISGS 369 (465)
Q Consensus 295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~Dg---tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~-~l~sgs 369 (465)
...+..+..++.+++|+|++ +++++..++ .|.+||+.+++.+..+.+...+.+++|+| +++ +++++.
T Consensus 76 -------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~ 147 (331)
T 3u4y_A 76 -------VVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISP-NGNGLILIDR 147 (331)
T ss_dssp -------EEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECT-TSSCEEEEEE
T ss_pred -------EEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECC-CCCEEEEEec
Confidence 22333444555558999986 566444442 99999999999999888777889999999 876 455556
Q ss_pred CCCc-EEEEeCCCCe-EE----ecccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecCCcee--eeEeeecCcccccC
Q 012367 370 IDGK-VRIWGVCEKR-VV----DWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLK--LEKVDFHDRKKTSG 440 (465)
Q Consensus 370 ~Dg~-I~iwd~~~~~-~~----~~~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~~~~~--~~~~~~~~~~~~~~ 440 (465)
.++. |.+|++.... +. ........+..++|+|+|+++++++ .++.|++||+.+++.. ...+. ..
T Consensus 148 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~-------~~ 220 (331)
T 3u4y_A 148 SSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG-------TN 220 (331)
T ss_dssp TTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE-------CS
T ss_pred CCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc-------CC
Confidence 6688 9999987532 21 2224456689999999999766655 5899999999887751 11222 12
Q ss_pred CceeeEEEeecCCc
Q 012367 441 NKITGIQGRISKNY 454 (465)
Q Consensus 441 ~~It~~~f~p~gs~ 454 (465)
..+.++.|+|+|.+
T Consensus 221 ~~~~~~~~spdg~~ 234 (331)
T 3u4y_A 221 NLPGTIVVSRDGST 234 (331)
T ss_dssp SCCCCEEECTTSSE
T ss_pred CCCceEEECCCCCE
Confidence 46778899998873
No 137
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.59 E-value=8e-14 Score=145.70 Aligned_cols=240 Identities=13% Similarity=0.123 Sum_probs=154.4
Q ss_pred cchhhhccCCCcEEEEEECC----CCCEEEEEeC-CCcEEEEecCCceeeeeeecCCCCcc-----cccCCCeEEeccCC
Q 012367 213 YTSQEIQAHKGCIWTLKFSP----DGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFG-----SNAKEGKIKFGKKK 282 (465)
Q Consensus 213 ~~~~~l~~H~~~I~~l~fsp----dg~~LaSgs~-Dg~V~iWd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 282 (465)
....++. +...+..++|+| +|++|++++. +++|.|||..+.+............. .......+.+....
T Consensus 213 ~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~ 291 (543)
T 1nir_A 213 TKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH 291 (543)
T ss_dssp EEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSS
T ss_pred cEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCC
Confidence 3344555 445679999999 9999999985 89999999988776654433110000 00000111111111
Q ss_pred CCc-eeEecCCceeeec--C-Ccce-eeeccccceEEEEecCCC-EEE-EEeCCCeEEEEeCCCCeEeEEec-----CCC
Q 012367 283 SSH-VPVVIPDEVFQIE--E-SPLQ-ELHGHKGDVLDLAWSNSN-YLL-SCSMDKTVRMWQVGCNQCLNVFD-----HHN 350 (465)
Q Consensus 283 ~~~-~~~~~~~~~~~~~--~-~~~~-~~~gh~~~V~~l~~s~~~-~l~-s~s~DgtV~lWD~~~~~~l~~~~-----h~~ 350 (465)
... ......+.++.+. . +.+. ....+...+.++.|+|++ +++ ++..+++|.+||+.+++++..+. |..
T Consensus 292 ~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g 371 (543)
T 1nir_A 292 PEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPG 371 (543)
T ss_dssp SEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCT
T ss_pred CEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCC
Confidence 111 1111112222221 1 1111 122356678889999986 455 55568999999999999988875 544
Q ss_pred ceEEEEEccCCCCEEEEEe-CCCcEEEEeCCC-------CeEEe-cccCCCCeEEEEEeeCCCEEEEEE-------cCCc
Q 012367 351 YVTCVQFNPIDDNYFISGS-IDGKVRIWGVCE-------KRVVD-WADVRDVISAICYIPDGKGFIVGS-------ITGT 414 (465)
Q Consensus 351 ~V~~i~fsp~~~~~l~sgs-~Dg~I~iwd~~~-------~~~~~-~~~~~~~V~sv~~spdg~~l~sgs-------~dG~ 414 (465)
....+ ++|..+.++++++ .|++|.+||+.+ .+++. +..|...+..++++|+|++|++++ .+++
T Consensus 372 ~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~ 450 (543)
T 1nir_A 372 RGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS 450 (543)
T ss_dssp TCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTC
T ss_pred CCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCce
Confidence 44443 5673477788876 589999999987 56655 666777889999999999999988 3789
Q ss_pred EEEEEecCCceeeeEeeecC--cccccCCceeeEEEeecCCc
Q 012367 415 CHFYKASGNDLKLEKVDFHD--RKKTSGNKITGIQGRISKNY 454 (465)
Q Consensus 415 v~iwd~~~~~~~~~~~~~~~--~~~~~~~~It~~~f~p~gs~ 454 (465)
|.+||+.+.+..+..+.... ....+.+.+..+.|+|+|.+
T Consensus 451 v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~ 492 (543)
T 1nir_A 451 VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDE 492 (543)
T ss_dssp EEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSE
T ss_pred EEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCE
Confidence 99999998886645443211 01123578999999999865
No 138
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.58 E-value=2e-14 Score=154.82 Aligned_cols=167 Identities=12% Similarity=0.095 Sum_probs=125.1
Q ss_pred hhhhccCCC---cEEEEEECCCCCEEEEEeCC---------CcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCC
Q 012367 215 SQEIQAHKG---CIWTLKFSPDGRYLASGGED---------GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKK 282 (465)
Q Consensus 215 ~~~l~~H~~---~I~~l~fspdg~~LaSgs~D---------g~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (465)
.+.+.+|.. .|.+++|||||++||+++.+ +.|.+||+.++...
T Consensus 50 ~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~------------------------- 104 (723)
T 1xfd_A 50 TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ------------------------- 104 (723)
T ss_dssp EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE-------------------------
T ss_pred EEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE-------------------------
Confidence 344555654 49999999999999999875 77889999875321
Q ss_pred CCceeEecCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCce--------
Q 012367 283 SSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYV-------- 352 (465)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V-------- 352 (465)
.+....+|...+..++|+|++ .|++++. +.|++||+.+++...... +...+
T Consensus 105 ------------------~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~ 165 (723)
T 1xfd_A 105 ------------------SLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDW 165 (723)
T ss_dssp ------------------ECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCH
T ss_pred ------------------eccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccce
Confidence 011122455668889999987 6777765 899999999988776654 23323
Q ss_pred ----------EEEEEccCCCCEEEEEeCCC----------------------------------cEEEEeCCCCeE-Eec
Q 012367 353 ----------TCVQFNPIDDNYFISGSIDG----------------------------------KVRIWGVCEKRV-VDW 387 (465)
Q Consensus 353 ----------~~i~fsp~~~~~l~sgs~Dg----------------------------------~I~iwd~~~~~~-~~~ 387 (465)
.+++|+| ++++|++++.|+ .|++||+.+++. ..+
T Consensus 166 v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l 244 (723)
T 1xfd_A 166 LYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEM 244 (723)
T ss_dssp HHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEEC
T ss_pred eEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEe
Confidence 7899999 999999988653 799999988874 344
Q ss_pred ccC------CCCeEEEEEeeCCCEEEEEEc----CCcEEEEEecCCcee
Q 012367 388 ADV------RDVISAICYIPDGKGFIVGSI----TGTCHFYKASGNDLK 426 (465)
Q Consensus 388 ~~~------~~~V~sv~~spdg~~l~sgs~----dG~v~iwd~~~~~~~ 426 (465)
..+ ...+.+++|+|||+.|++.+. ++.|++||+.+++..
T Consensus 245 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~ 293 (723)
T 1xfd_A 245 MPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT 293 (723)
T ss_dssp CCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE
T ss_pred eCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce
Confidence 433 567899999999998877754 357999999887654
No 139
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.58 E-value=1.9e-13 Score=133.34 Aligned_cols=175 Identities=9% Similarity=0.068 Sum_probs=133.3
Q ss_pred EEEEEECCCCCEEEEEe--CCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcc
Q 012367 225 IWTLKFSPDGRYLASGG--EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 302 (465)
Q Consensus 225 I~~l~fspdg~~LaSgs--~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (465)
+.+++|+|+|+++++++ .++.|.+||..+....
T Consensus 143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~--------------------------------------------- 177 (353)
T 3vgz_A 143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLK--------------------------------------------- 177 (353)
T ss_dssp EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE---------------------------------------------
T ss_pred CceEEECCCCCEEEEEecCCCceEEEEcCCCCceE---------------------------------------------
Confidence 78999999999877776 5889999999875432
Q ss_pred eeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-----CCCceEEEEEccCCCCEEEEEeC-CCcEE
Q 012367 303 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSI-DGKVR 375 (465)
Q Consensus 303 ~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-----h~~~V~~i~fsp~~~~~l~sgs~-Dg~I~ 375 (465)
..+..+...+.+++|+|++ +|++++.++.|.+||+.+++.+..+. +...+..++|+| ++++++.++. ++.|.
T Consensus 178 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~ 256 (353)
T 3vgz_A 178 TAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT-ARQRAFITDSKAAEVL 256 (353)
T ss_dssp EEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET-TTTEEEEEESSSSEEE
T ss_pred EEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC-CCCEEEEEeCCCCEEE
Confidence 2222234456788999975 78888899999999999999888774 355688999999 8887666654 59999
Q ss_pred EEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc
Q 012367 376 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY 454 (465)
Q Consensus 376 iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~ 454 (465)
+||+.+++.+....... ...++|+|+|+.+++++ .++.|.+||+.+++... .+.. .....++.|+|+|.+
T Consensus 257 ~~d~~~~~~~~~~~~~~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~-~~~~-------~~~~~~~~~s~dg~~ 327 (353)
T 3vgz_A 257 VVDTRNGNILAKVAAPE-SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVK-TFDT-------PTHPNSLALSADGKT 327 (353)
T ss_dssp EEETTTCCEEEEEECSS-CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EEEC-------CSEEEEEEECTTSCE
T ss_pred EEECCCCcEEEEEEcCC-CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEE-EEec-------CCCCCeEEEcCCCCE
Confidence 99999988776444333 36799999999776666 68999999998876532 2322 235788999998874
No 140
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.58 E-value=4.7e-13 Score=130.47 Aligned_cols=218 Identities=10% Similarity=0.105 Sum_probs=147.9
Q ss_pred CCCcEEEEEECCCCCEEEEEeC-------CCcEEEEecCCceeeeeeecCCCCcc-cccCCC-eEEeccCCCCceeEecC
Q 012367 221 HKGCIWTLKFSPDGRYLASGGE-------DGVVRIWHVTSVAASCKSFTDDGGFG-SNAKEG-KIKFGKKKSSHVPVVIP 291 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaSgs~-------Dg~V~iWd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~ 291 (465)
+...+..++|+|+|++|++++. ++.|.+||..++.............. .....+ .+.+.........++..
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 4566889999999998888874 56899999998776655443222111 111111 12222222222222211
Q ss_pred CceeeecCCcceeeecccc---------ceEEEEecCCC-EEEEEe--CCCeEEEEeCCCCeEeEEec-CCCceEEEEEc
Q 012367 292 DEVFQIEESPLQELHGHKG---------DVLDLAWSNSN-YLLSCS--MDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFN 358 (465)
Q Consensus 292 ~~~~~~~~~~~~~~~gh~~---------~V~~l~~s~~~-~l~s~s--~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fs 358 (465)
. ..+.+..+..+.. .+.+++|+|++ ++++++ .++.|.+||+.+++.+..+. +...+.+++|+
T Consensus 119 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s 193 (353)
T 3vgz_A 119 K-----TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALD 193 (353)
T ss_dssp T-----TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEE
T ss_pred C-----CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEEC
Confidence 1 1233344443322 27889999975 555544 58899999999999999887 66678999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeEEeccc-----CCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCceeeeEeee
Q 012367 359 PIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-----VRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDF 432 (465)
Q Consensus 359 p~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-----~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~~~~~~~~ 432 (465)
| +++++++++.++.|.+||+.+++...... +...+..++|+|+|+.+++++. ++.|.+||+.+++... .+..
T Consensus 194 ~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~-~~~~ 271 (353)
T 3vgz_A 194 S-EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILA-KVAA 271 (353)
T ss_dssp T-TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEE-EEEC
T ss_pred C-CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE-EEEc
Confidence 9 99999999999999999999988775322 4556889999999998877776 4999999998876532 2322
Q ss_pred cCcccccCCceeeEEEeecCC
Q 012367 433 HDRKKTSGNKITGIQGRISKN 453 (465)
Q Consensus 433 ~~~~~~~~~~It~~~f~p~gs 453 (465)
.. -.++.|+|+|.
T Consensus 272 ~~--------~~~~~~s~dg~ 284 (353)
T 3vgz_A 272 PE--------SLAVLFNPARN 284 (353)
T ss_dssp SS--------CCCEEEETTTT
T ss_pred CC--------CceEEECCCCC
Confidence 21 24677888765
No 141
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.57 E-value=1.1e-13 Score=135.28 Aligned_cols=190 Identities=14% Similarity=0.155 Sum_probs=130.5
Q ss_pred cCCCcEEEEEECCCCCEEEEEeC---CCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~---Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (465)
.+...+..++|+|+|+ |++++. ++.|.+|++.++...
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~--------------------------------------- 76 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH--------------------------------------- 76 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE---------------------------------------
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE---------------------------------------
Confidence 4556778899999999 555544 689999999654321
Q ss_pred ecCCcceeeeccccceEEEEecCCC-EEEEEe-CCCeEEEEeCC-CC--eEeEEecCC----------CceEEEEEccCC
Q 012367 297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVG-CN--QCLNVFDHH----------NYVTCVQFNPID 361 (465)
Q Consensus 297 ~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s-~DgtV~lWD~~-~~--~~l~~~~h~----------~~V~~i~fsp~~ 361 (465)
.+..+..+...+..++|+|++ +|++++ .+++|.+|++. ++ ..+..+.+. ..+.+++|+| +
T Consensus 77 ----~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-d 151 (347)
T 3hfq_A 77 ----KLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-D 151 (347)
T ss_dssp ----EEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-T
T ss_pred ----EeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-C
Confidence 123334466778899999986 677776 78999999996 33 334444332 2488999999 8
Q ss_pred CCEEEEEeCCCcEEEEeCC-CCeEEec----ccCCCCeEEEEEeeCCCEEEEE-EcCCcEEEEEecC--Cceeee-Eeee
Q 012367 362 DNYFISGSIDGKVRIWGVC-EKRVVDW----ADVRDVISAICYIPDGKGFIVG-SITGTCHFYKASG--NDLKLE-KVDF 432 (465)
Q Consensus 362 ~~~l~sgs~Dg~I~iwd~~-~~~~~~~----~~~~~~V~sv~~spdg~~l~sg-s~dG~v~iwd~~~--~~~~~~-~~~~ 432 (465)
++++++...++.|++|++. ++.+... ......+..++|+|||++++++ ..++.|.+|++.. +++... .+..
T Consensus 152 g~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~ 231 (347)
T 3hfq_A 152 NRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKT 231 (347)
T ss_dssp SCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred CcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeee
Confidence 8877777778999999998 5554321 2233468889999999976664 5688999999985 444322 2222
Q ss_pred cCcccccCCceeeEEEeecCCc
Q 012367 433 HDRKKTSGNKITGIQGRISKNY 454 (465)
Q Consensus 433 ~~~~~~~~~~It~~~f~p~gs~ 454 (465)
..........+.++.|+|+|.+
T Consensus 232 ~~~~~~~~~~~~~i~~spdG~~ 253 (347)
T 3hfq_A 232 IPADYTAHNGAAAIRLSHDGHF 253 (347)
T ss_dssp SCTTCCSCCEEEEEEECTTSCE
T ss_pred cCCCCCCCCcceeEEECCCCCE
Confidence 1111112256888999999875
No 142
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.57 E-value=1.2e-13 Score=133.80 Aligned_cols=192 Identities=12% Similarity=0.124 Sum_probs=132.8
Q ss_pred hhhccCCCcEEEEEECCCCCEEEEEeCCC---cEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDG---VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg---~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (465)
+.+..|..++.+++|+|+|++|+++..++ .|.+||+.++....
T Consensus 77 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~---------------------------------- 122 (331)
T 3u4y_A 77 VAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIS---------------------------------- 122 (331)
T ss_dssp EEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEE----------------------------------
T ss_pred EecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEE----------------------------------
Confidence 44556777776799999999999655553 89999998754321
Q ss_pred ceeeecCCcceeeeccccceEEEEecCCC--EEEEEeCCCe-EEEEeCCCCeEe-----EEecCCCceEEEEEccCCCCE
Q 012367 293 EVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKT-VRMWQVGCNQCL-----NVFDHHNYVTCVQFNPIDDNY 364 (465)
Q Consensus 293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~l~s~s~Dgt-V~lWD~~~~~~l-----~~~~h~~~V~~i~fsp~~~~~ 364 (465)
.+. +...+.+++|+|++ +++++..++. |.+|++.....+ ..+.....+.+++|+| ++++
T Consensus 123 -----------~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~sp-dg~~ 189 (331)
T 3u4y_A 123 -----------TIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTP-DGNF 189 (331)
T ss_dssp -----------EEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECT-TSSE
T ss_pred -----------EEE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECC-CCCE
Confidence 121 22345799999986 4455566688 999998754332 2334556789999999 8885
Q ss_pred E-EEEeCCCcEEEEeCCCCeE---EecccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecCCceeee-EeeecC-ccc
Q 012367 365 F-ISGSIDGKVRIWGVCEKRV---VDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLE-KVDFHD-RKK 437 (465)
Q Consensus 365 l-~sgs~Dg~I~iwd~~~~~~---~~~~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~~~~~~~-~~~~~~-~~~ 437 (465)
+ +++..++.|++||+.+++. +........+..++|+|||+++++++ .++.|.+||+.++++... .+...- ...
T Consensus 190 l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 269 (331)
T 3u4y_A 190 AFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDP 269 (331)
T ss_dssp EEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCC
T ss_pred EEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCC
Confidence 5 4555689999999998876 55555567789999999999877665 478899999998877433 222110 000
Q ss_pred ccCCceeeEEEeecCCc
Q 012367 438 TSGNKITGIQGRISKNY 454 (465)
Q Consensus 438 ~~~~~It~~~f~p~gs~ 454 (465)
.......++.|+|+|.+
T Consensus 270 ~~~~~~~~~~~spdg~~ 286 (331)
T 3u4y_A 270 RPLFGANQMALNKTETK 286 (331)
T ss_dssp GGGTTCCCEEECTTSSE
T ss_pred CCcccccceEECCCCCE
Confidence 11122356889998764
No 143
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.57 E-value=3.6e-14 Score=159.71 Aligned_cols=177 Identities=8% Similarity=0.039 Sum_probs=143.4
Q ss_pred CCCcEEEEEEC-CCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367 221 HKGCIWTLKFS-PDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (465)
Q Consensus 221 H~~~I~~l~fs-pdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (465)
|.+.|.+++|| |+|++||+++ ++.|.+|++.++.
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~-------------------------------------------- 328 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY-------------------------------------------- 328 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB--------------------------------------------
T ss_pred cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc--------------------------------------------
Confidence 56689999999 9999999988 7899999987532
Q ss_pred Ccceeeecccc-ceEEEEecCCC-EEEEEeCCCeEE-EEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEE
Q 012367 300 SPLQELHGHKG-DVLDLAWSNSN-YLLSCSMDKTVR-MWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI 376 (465)
Q Consensus 300 ~~~~~~~gh~~-~V~~l~~s~~~-~l~s~s~DgtV~-lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~i 376 (465)
...+..|.. .+..++|+ ++ .|++++.+..+. +||+.++.......|...+.+++|+| ++++|++++.++.|++
T Consensus 329 --~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~ 404 (1045)
T 1k32_A 329 --VLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDR-NGKFAVVANDRFEIMT 404 (1045)
T ss_dssp --EEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECT-TSSEEEEEETTSEEEE
T ss_pred --eEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECC-CCCEEEEECCCCeEEE
Confidence 122335666 88999999 75 788888888898 99998877655446778999999999 9999999999999999
Q ss_pred EeCCCCeEEecc-cCCCCeEEEEEeeCCCEEEEEEcCC----------cEEEEEecCCceeeeEeeecCcccccCCceee
Q 012367 377 WGVCEKRVVDWA-DVRDVISAICYIPDGKGFIVGSITG----------TCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 445 (465)
Q Consensus 377 wd~~~~~~~~~~-~~~~~V~sv~~spdg~~l~sgs~dG----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~ 445 (465)
||+.+++..... +|...+.+++|+|||++|++++.++ .|++||+.+++. ..+.. +...+..
T Consensus 405 ~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~--~~l~~------~~~~~~~ 476 (1045)
T 1k32_A 405 VDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI--FAATT------ENSHDYA 476 (1045)
T ss_dssp EETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE--EECSC------SSSBEEE
T ss_pred EECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE--EEeeC------CCcccCC
Confidence 999998877654 7888899999999999999888754 899999998752 22221 2345677
Q ss_pred EEEeecCCc
Q 012367 446 IQGRISKNY 454 (465)
Q Consensus 446 ~~f~p~gs~ 454 (465)
+.|+|+|.+
T Consensus 477 ~~~spdG~~ 485 (1045)
T 1k32_A 477 PAFDADSKN 485 (1045)
T ss_dssp EEECTTSCE
T ss_pred ceEcCCCCE
Confidence 889998874
No 144
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.56 E-value=8.9e-15 Score=157.58 Aligned_cols=181 Identities=15% Similarity=0.168 Sum_probs=131.5
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcce
Q 012367 224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 303 (465)
Q Consensus 224 ~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (465)
.+.+++|+|||+++++ +.||+|++||+.++.. ..
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~---------------------------------------------~~ 51 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTS---------------------------------------------TV 51 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC---------------------------------------------EE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcE---------------------------------------------EE
Confidence 4678999999998877 7899999999987532 22
Q ss_pred eeecccc---ceEEEEecCCC-EEEEEeCC---------CeEEEEeCCCCeEeEEec----CCCceEEEEEccCCCCEEE
Q 012367 304 ELHGHKG---DVLDLAWSNSN-YLLSCSMD---------KTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFI 366 (465)
Q Consensus 304 ~~~gh~~---~V~~l~~s~~~-~l~s~s~D---------gtV~lWD~~~~~~l~~~~----h~~~V~~i~fsp~~~~~l~ 366 (465)
.+.+|.. .|.+++|+|++ +|++++.+ +.|.+||+.++++ ..+. |...+..++|+| ++++|+
T Consensus 52 ~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SP-dG~~la 129 (723)
T 1xfd_A 52 LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGP-KGQQLI 129 (723)
T ss_dssp EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCS-STTCEE
T ss_pred EeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECC-CCCEEE
Confidence 2333433 48899999986 78888764 7888999998876 3332 344589999999 999999
Q ss_pred EEeCCCcEEEEeCCCCeEEeccc-CCCC------------------eEEEEEeeCCCEEEEEEcCC--------------
Q 012367 367 SGSIDGKVRIWGVCEKRVVDWAD-VRDV------------------ISAICYIPDGKGFIVGSITG-------------- 413 (465)
Q Consensus 367 sgs~Dg~I~iwd~~~~~~~~~~~-~~~~------------------V~sv~~spdg~~l~sgs~dG-------------- 413 (465)
.++. +.|++||+.+++...+.. +... +.+++|+|||+.|++++.++
T Consensus 130 ~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~ 208 (723)
T 1xfd_A 130 FIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGS 208 (723)
T ss_dssp EEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSS
T ss_pred EEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCc
Confidence 9885 899999999877655332 2322 37899999999999988653
Q ss_pred --------------------cEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc
Q 012367 414 --------------------TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY 454 (465)
Q Consensus 414 --------------------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~ 454 (465)
.|++||+.+++... .+..+.....+...+..+.|+|+|.+
T Consensus 209 ~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~-~l~~~~~~~~~~~~~~~~~~SpDg~~ 268 (723)
T 1xfd_A 209 IYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDL-EMMPPDDPRMREYYITMVKWATSTKV 268 (723)
T ss_dssp SSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCE-ECCCCCCGGGSSEEEEEEEESSSSEE
T ss_pred CCCcceeccCCCCCCCCCeeEEEEEECCCCceeE-EeeCCccCCCccceeEEEEEeCCCeE
Confidence 78888887765311 22222111122457888999998853
No 145
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.56 E-value=3.3e-13 Score=130.69 Aligned_cols=179 Identities=13% Similarity=0.193 Sum_probs=122.8
Q ss_pred cEEEEEECCCCCEEEEEeC-CCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcc
Q 012367 224 CIWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 302 (465)
Q Consensus 224 ~I~~l~fspdg~~LaSgs~-Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (465)
.+..++|+|+|++|++++. ++.|.+||+..+... ...
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~------------------------------------------~~~ 122 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV------------------------------------------GVV 122 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEE------------------------------------------EEE
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccc------------------------------------------ccc
Confidence 7889999999998877665 889999998422110 111
Q ss_pred eeeeccccceEEEEecCCC-EEEEEe-CCCeEEEEeCCC-CeEeE----Ee--cCCCceEEEEEccCCCCEEEEE-eCCC
Q 012367 303 QELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVGC-NQCLN----VF--DHHNYVTCVQFNPIDDNYFISG-SIDG 372 (465)
Q Consensus 303 ~~~~gh~~~V~~l~~s~~~-~l~s~s-~DgtV~lWD~~~-~~~l~----~~--~h~~~V~~i~fsp~~~~~l~sg-s~Dg 372 (465)
..+.. ...+.+++|+|++ ++++++ .++.|++||+.+ ++... .+ .....+.+++|+| ++++++++ ..++
T Consensus 123 ~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-dg~~l~~~~~~~~ 200 (343)
T 1ri6_A 123 DVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP-NEQYAYCVNELNS 200 (343)
T ss_dssp EEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT-TSSEEEEEETTTT
T ss_pred ccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECC-CCCEEEEEeCCCC
Confidence 22222 2357889999986 666666 899999999987 65432 22 2455789999999 88866554 4789
Q ss_pred cEEEEeCCC--CeEE--e-cc---c---CCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEec--CCceeee-EeeecCccc
Q 012367 373 KVRIWGVCE--KRVV--D-WA---D---VRDVISAICYIPDGKGFIVGS-ITGTCHFYKAS--GNDLKLE-KVDFHDRKK 437 (465)
Q Consensus 373 ~I~iwd~~~--~~~~--~-~~---~---~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~--~~~~~~~-~~~~~~~~~ 437 (465)
.|++||+.. +... . .. . ....+..++|+|+|++|+++. .++.|.+|++. ++..... .+...
T Consensus 201 ~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~---- 276 (343)
T 1ri6_A 201 SVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE---- 276 (343)
T ss_dssp EEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS----
T ss_pred EEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC----
Confidence 999999953 4321 1 11 1 134577899999999887555 68999999998 4333332 22222
Q ss_pred ccCCceeeEEEeecCC
Q 012367 438 TSGNKITGIQGRISKN 453 (465)
Q Consensus 438 ~~~~~It~~~f~p~gs 453 (465)
..+.++.|+|+|.
T Consensus 277 ---~~~~~~~~s~dg~ 289 (343)
T 1ri6_A 277 ---TQPRGFNVDHSGK 289 (343)
T ss_dssp ---SSCCCEEECTTSS
T ss_pred ---CccceEEECCCCC
Confidence 2377889988875
No 146
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.54 E-value=7.2e-13 Score=127.97 Aligned_cols=196 Identities=11% Similarity=0.092 Sum_probs=128.7
Q ss_pred cEEEEEECCCCCEE-EEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEe------------c
Q 012367 224 CIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV------------I 290 (465)
Q Consensus 224 ~I~~l~fspdg~~L-aSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~ 290 (465)
.+.+++|+|+|+++ ++++.++.|.+||+.++............. .......+.+...+....... .
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 113 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE-RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ 113 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE-EEECTTCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc-ccccccceEECCCCCEEEEEeccccccccccccc
Confidence 47889999999865 566678999999998877654433221000 000011111211111111110 1
Q ss_pred CCce--eeecC-CcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecCC-----------------
Q 012367 291 PDEV--FQIEE-SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHH----------------- 349 (465)
Q Consensus 291 ~~~~--~~~~~-~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~----------------- 349 (465)
...+ ++... +.+..+.. ...+.+++|+|++ +|+++ ++.|.+||+.+++.+..+...
T Consensus 114 ~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 190 (337)
T 1pby_B 114 PTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWN 190 (337)
T ss_dssp CCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCC
T ss_pred CceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEee
Confidence 1222 22222 22333332 4467788999986 46666 688999999888776555311
Q ss_pred --------------------------------------------------CceEEEEEccCCCCEEEEEeCCCcEEEEeC
Q 012367 350 --------------------------------------------------NYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379 (465)
Q Consensus 350 --------------------------------------------------~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~ 379 (465)
..+.+++|+| ++++++++ ++.|++||+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~--~~~v~~~d~ 267 (337)
T 1pby_B 191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP-AKTRAFGA--YNVLESFDL 267 (337)
T ss_dssp CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT-TSSEEEEE--ESEEEEEET
T ss_pred eccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECC-CCCEEEEe--CCeEEEEEC
Confidence 1244689999 99998888 799999999
Q ss_pred CCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367 380 CEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK 426 (465)
Q Consensus 380 ~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~ 426 (465)
.+++.+........+.+++|+|+|++|++++.++.|.+||+.+++..
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 268 EKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp TTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred CCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 99988776556677899999999999999999999999999987653
No 147
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.54 E-value=1.6e-12 Score=127.96 Aligned_cols=220 Identities=15% Similarity=0.092 Sum_probs=135.2
Q ss_pred CCCcEEEEEECCCCCEEEEEeCC----CcEEEEecCC--ceeeeeeec--CCCCcccccCCCe-EEeccCCCCceeEecC
Q 012367 221 HKGCIWTLKFSPDGRYLASGGED----GVVRIWHVTS--VAASCKSFT--DDGGFGSNAKEGK-IKFGKKKSSHVPVVIP 291 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaSgs~D----g~V~iWd~~~--~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 291 (465)
|......++|+|+|++|++++.+ +.|.+|++.. +........ ...........+. +...........+
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~--- 124 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITV--- 124 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEE---
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEE---
Confidence 66778889999999999999986 8999999865 332221111 1111000000111 2222111111111
Q ss_pred Cceeeec-CCcce---e---e--------eccccceEEEEecCCC-EEE-EEeCCCeEEEEeCCCCe-------E-----
Q 012367 292 DEVFQIE-ESPLQ---E---L--------HGHKGDVLDLAWSNSN-YLL-SCSMDKTVRMWQVGCNQ-------C----- 342 (465)
Q Consensus 292 ~~~~~~~-~~~~~---~---~--------~gh~~~V~~l~~s~~~-~l~-s~s~DgtV~lWD~~~~~-------~----- 342 (465)
|.+. ...+. . . ..+...+.+++|+|++ +|+ ++..++.|.+|++.... .
T Consensus 125 ---~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~ 201 (361)
T 3scy_A 125 ---FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGT 201 (361)
T ss_dssp ---EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEE
T ss_pred ---EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccc
Confidence 2211 00110 0 0 1123346889999987 454 44458999999886543 1
Q ss_pred --eEEecCCCceEEEEEccCCCCEEEEEe-CCCcEEEEeCCCCeEEe------cccCCCCeEEEEEeeCCCEEEEEEcC-
Q 012367 343 --LNVFDHHNYVTCVQFNPIDDNYFISGS-IDGKVRIWGVCEKRVVD------WADVRDVISAICYIPDGKGFIVGSIT- 412 (465)
Q Consensus 343 --l~~~~h~~~V~~i~fsp~~~~~l~sgs-~Dg~I~iwd~~~~~~~~------~~~~~~~V~sv~~spdg~~l~sgs~d- 412 (465)
.....+...+..++|+| +++++++++ .++.|.+||+.++.+.. ...+...+..++|+|||++|+++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~ 280 (361)
T 3scy_A 202 PEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK 280 (361)
T ss_dssp EEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS
T ss_pred ccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC
Confidence 22234566788999999 999887776 68999999998776532 12234557899999999998777665
Q ss_pred -CcEEEEEec--CCceeee-EeeecCcccccCCceeeEEEeecCCc
Q 012367 413 -GTCHFYKAS--GNDLKLE-KVDFHDRKKTSGNKITGIQGRISKNY 454 (465)
Q Consensus 413 -G~v~iwd~~--~~~~~~~-~~~~~~~~~~~~~~It~~~f~p~gs~ 454 (465)
+.|.+|++. ++++... .+.. +..+.++.|+|+|.+
T Consensus 281 ~~~i~v~~~~~~~g~~~~~~~~~~-------g~~~~~~~~spdg~~ 319 (361)
T 3scy_A 281 ADGVAIFKVDETNGTLTKVGYQLT-------GIHPRNFIITPNGKY 319 (361)
T ss_dssp SCEEEEEEECTTTCCEEEEEEEEC-------SSCCCEEEECTTSCE
T ss_pred CCEEEEEEEcCCCCcEEEeeEecC-------CCCCceEEECCCCCE
Confidence 899999996 4444332 2222 246778999999864
No 148
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.53 E-value=7.6e-14 Score=150.03 Aligned_cols=197 Identities=14% Similarity=0.157 Sum_probs=133.7
Q ss_pred hccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCC-----ceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCC
Q 012367 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS-----VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (465)
Q Consensus 218 l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (465)
+..|.+.+.+++|||||++||++ .|+.|++|++.+ +........... .+..
T Consensus 116 l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~---------~~~~-------------- 171 (706)
T 2z3z_A 116 LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTE---------TLVY-------------- 171 (706)
T ss_dssp EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBT---------TEEE--------------
T ss_pred ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCC---------CeEc--------------
Confidence 44567778899999999999985 679999999876 432211000000 0000
Q ss_pred ceeeecCCcceeeeccccceEEEEecCCC-EEEEEe---------------------------------CCCeEEEEeCC
Q 012367 293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCS---------------------------------MDKTVRMWQVG 338 (465)
Q Consensus 293 ~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s---------------------------------~DgtV~lWD~~ 338 (465)
+.+ ....+...+.+++|+|++ +|++++ .+..|++||+.
T Consensus 172 ------g~~--~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~ 243 (706)
T 2z3z_A 172 ------GQA--VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLA 243 (706)
T ss_dssp ------SSC--CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETT
T ss_pred ------ccc--hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECC
Confidence 000 112233456789999986 777776 45789999999
Q ss_pred CCeEeEEe---cCCCceEEEEEccCCCCEEEEEeCCC-----cEEEEeCCCC-eEEecc--cCCC---CeEEEEEee--C
Q 012367 339 CNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDG-----KVRIWGVCEK-RVVDWA--DVRD---VISAICYIP--D 402 (465)
Q Consensus 339 ~~~~l~~~---~h~~~V~~i~fsp~~~~~l~sgs~Dg-----~I~iwd~~~~-~~~~~~--~~~~---~V~sv~~sp--d 402 (465)
+++..... .|...+.+++|+| ++++|++++.++ .|++||+.++ ...... .+.. .+.+++|+| |
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~d 322 (706)
T 2z3z_A 244 TGKTVYLQTGEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSN 322 (706)
T ss_dssp TTEEEECCCCSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCS
T ss_pred CCceEeeccCCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCC
Confidence 98876554 3667899999999 999999988776 8999999988 444332 2222 347789999 9
Q ss_pred CCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceee-EEEeecCC
Q 012367 403 GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG-IQGRISKN 453 (465)
Q Consensus 403 g~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~-~~f~p~gs 453 (465)
|+++++++.+|.+++|.+.........+..+ ...+.+ +.|+|+|.
T Consensus 323 g~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~------~~~v~~~~~~spdg~ 368 (706)
T 2z3z_A 323 NQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG------EWEVTNFAGFDPKGT 368 (706)
T ss_dssp SEEEEEECTTSSCEEEEEETTSCEEEECCCS------SSCEEEEEEECTTSS
T ss_pred CEEEEEEccCCccEEEEEECCCCEEEecCCC------CeEEEeeeEEcCCCC
Confidence 9999999999999999987322222233211 234555 67877764
No 149
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.52 E-value=8.1e-13 Score=129.15 Aligned_cols=196 Identities=12% Similarity=0.115 Sum_probs=128.7
Q ss_pred hccCCCcEEEEEECCCCCEEEEEe-CCCcEEEEecCCc-eeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367 218 IQAHKGCIWTLKFSPDGRYLASGG-EDGVVRIWHVTSV-AASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (465)
Q Consensus 218 l~~H~~~I~~l~fspdg~~LaSgs-~Dg~V~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (465)
+..|...+..++|+|+|++|++++ .++.|.+|++... .......... .
T Consensus 81 ~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~--------------------------~---- 130 (347)
T 3hfq_A 81 VVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQH--------------------------S---- 130 (347)
T ss_dssp EEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEEC--------------------------C----
T ss_pred eecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeec--------------------------C----
Confidence 345777889999999999998888 7899999999631 1110000000 0
Q ss_pred eecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCC-CCeEeE--Ee--cCCCceEEEEEccCCCCEEEE-E
Q 012367 296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG-CNQCLN--VF--DHHNYVTCVQFNPIDDNYFIS-G 368 (465)
Q Consensus 296 ~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~-~~~~l~--~~--~h~~~V~~i~fsp~~~~~l~s-g 368 (465)
...+. ...+...+.+++|+|++ ++++...++.|.+||+. ++.... .+ .....+..++|+| +++++++ +
T Consensus 131 --~~~p~--~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~ 205 (347)
T 3hfq_A 131 --GHGPR--PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP-DGQYAFLAG 205 (347)
T ss_dssp --CCCSS--TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT-TSSEEEEEE
T ss_pred --CCCCC--ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC-CCCEEEEEe
Confidence 00000 11234568899999986 55566678899999998 554332 22 2334688999999 8886555 5
Q ss_pred eCCCcEEEEeCCC--CeEEe---cccCC------CCeEEEEEeeCCCEEE-EEEcCCcEEEEEecCC-ceeee-EeeecC
Q 012367 369 SIDGKVRIWGVCE--KRVVD---WADVR------DVISAICYIPDGKGFI-VGSITGTCHFYKASGN-DLKLE-KVDFHD 434 (465)
Q Consensus 369 s~Dg~I~iwd~~~--~~~~~---~~~~~------~~V~sv~~spdg~~l~-sgs~dG~v~iwd~~~~-~~~~~-~~~~~~ 434 (465)
..++.|++|++.. +.... ..... ..+..++|+|||++|+ +...++.|.+|++... .+... .+..+
T Consensus 206 ~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~- 284 (347)
T 3hfq_A 206 ELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTE- 284 (347)
T ss_dssp TTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECS-
T ss_pred CCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecC-
Confidence 6688999999874 54321 11111 4588999999999875 4556899999999733 33222 22222
Q ss_pred cccccCCceeeEEEeecCCc
Q 012367 435 RKKTSGNKITGIQGRISKNY 454 (465)
Q Consensus 435 ~~~~~~~~It~~~f~p~gs~ 454 (465)
...+.++.|+|+|.+
T Consensus 285 -----~~~~~~~~~spdg~~ 299 (347)
T 3hfq_A 285 -----GDFPRDFDLDPTEAF 299 (347)
T ss_dssp -----SSCCCEEEECTTSSE
T ss_pred -----CCCcCeEEECCCCCE
Confidence 345788999999864
No 150
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.51 E-value=2.2e-13 Score=146.48 Aligned_cols=179 Identities=9% Similarity=0.037 Sum_probs=128.9
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCc
Q 012367 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 301 (465)
Q Consensus 222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (465)
...|.+++|||+ ++++.+. |+.|++||+.++..
T Consensus 81 ~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~--------------------------------------------- 113 (706)
T 2z3z_A 81 AFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKV--------------------------------------------- 113 (706)
T ss_dssp -CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEE---------------------------------------------
T ss_pred ccCceeEEECCC-CeEEEEE-CCEEEEEECCCCce---------------------------------------------
Confidence 357999999999 6555553 59999999987432
Q ss_pred ceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCC-----CeEeEEec-CCCc--------------eEEEEEccC
Q 012367 302 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-----NQCLNVFD-HHNY--------------VTCVQFNPI 360 (465)
Q Consensus 302 ~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~-----~~~l~~~~-h~~~--------------V~~i~fsp~ 360 (465)
..+..+...+.+++|+|++ .|++ +.|+.|++||+.+ ++...... +... +.+++|+|
T Consensus 114 -~~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp- 190 (706)
T 2z3z_A 114 -TYLFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP- 190 (706)
T ss_dssp -EEEECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-
T ss_pred -EEccCCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-
Confidence 1223355667889999987 5666 5789999999998 77665443 2222 58999999
Q ss_pred CCCEEEEEe---------------------------------CCCcEEEEeCCCCeEEecc---cCCCCeEEEEEeeCCC
Q 012367 361 DDNYFISGS---------------------------------IDGKVRIWGVCEKRVVDWA---DVRDVISAICYIPDGK 404 (465)
Q Consensus 361 ~~~~l~sgs---------------------------------~Dg~I~iwd~~~~~~~~~~---~~~~~V~sv~~spdg~ 404 (465)
++++|++++ .+..|++||+.+++..... .+...+.+++|+|||+
T Consensus 191 Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 270 (706)
T 2z3z_A 191 KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDEN 270 (706)
T ss_dssp TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSS
T ss_pred CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCC
Confidence 999999988 4467999999998876543 4667899999999999
Q ss_pred EEEEEEcCC-----cEEEEEecCC-ceeeeEeeecCcccccCCceeeEEEee--cCC
Q 012367 405 GFIVGSITG-----TCHFYKASGN-DLKLEKVDFHDRKKTSGNKITGIQGRI--SKN 453 (465)
Q Consensus 405 ~l~sgs~dG-----~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~It~~~f~p--~gs 453 (465)
.|++++.++ .|++||+.++ ........... .....+.++.|+| +|.
T Consensus 271 ~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~---~~~~~~~~~~~sp~~dg~ 324 (706)
T 2z3z_A 271 ILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDK---HYVEPLHPLTFLPGSNNQ 324 (706)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECS---SCCCCCSCCEECTTCSSE
T ss_pred EEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCC---CeECccCCceeecCCCCE
Confidence 999988776 8999999987 33222111111 0112346677887 654
No 151
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.51 E-value=1.8e-12 Score=125.86 Aligned_cols=197 Identities=10% Similarity=0.090 Sum_probs=126.0
Q ss_pred cEEEEEECCCCCEE-EEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec------------
Q 012367 224 CIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI------------ 290 (465)
Q Consensus 224 ~I~~l~fspdg~~L-aSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 290 (465)
.+..++|+|+|+++ +++..++.|.+||+.++.....................+.+...+........
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 123 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 123 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence 57789999999865 45567899999999987765444322110000000111111111111111110
Q ss_pred CCce--eeecC----CcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCC--------------
Q 012367 291 PDEV--FQIEE----SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN-------------- 350 (465)
Q Consensus 291 ~~~~--~~~~~----~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~-------------- 350 (465)
...+ +++.. ..+..+. +...+.+++|+|++.++.++. .|.+||+.+++.+..+....
T Consensus 124 ~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (349)
T 1jmx_B 124 PPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGSLYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYF 200 (349)
T ss_dssp CCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSCEEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCC
T ss_pred CCeEEEEECCCccccceeeecc-CCCcccceeECCCCcEEEccC--cEEEEeCCCCceeccccccccCCccccCccceee
Confidence 1222 22221 2223333 344688999999876666543 49999999988877664221
Q ss_pred -------------------------------------------------------ceEEEEEccCCCCEEEEEeCCCcEE
Q 012367 351 -------------------------------------------------------YVTCVQFNPIDDNYFISGSIDGKVR 375 (465)
Q Consensus 351 -------------------------------------------------------~V~~i~fsp~~~~~l~sgs~Dg~I~ 375 (465)
.+..++|+|.++++++++ ++.|.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~ 278 (349)
T 1jmx_B 201 WPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLA 278 (349)
T ss_dssp CCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEE
T ss_pred ecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEE
Confidence 234556666467777777 88999
Q ss_pred EEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 376 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 376 iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
+||+.+++.+........+.+++|+|+|+.|++++.++.|.+||+.+.+.
T Consensus 279 ~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 279 KYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK 328 (349)
T ss_dssp EEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEE
T ss_pred EEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEeccccce
Confidence 99999998876555556788999999999999988899999999988765
No 152
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.51 E-value=1.5e-12 Score=140.61 Aligned_cols=229 Identities=9% Similarity=0.051 Sum_probs=144.2
Q ss_pred hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccc----------cCCCeEEeccCCCCc
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN----------AKEGKIKFGKKKSSH 285 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 285 (465)
+.+..|.+.+.+++|||||++||+++. +.|.+||+.++................ .....+.+...+...
T Consensus 145 ~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l 223 (741)
T 2ecf_A 145 RQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAI 223 (741)
T ss_dssp CBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCE
T ss_pred EEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEE
Confidence 456788899999999999999999985 689999998865543222111100000 000111121111111
Q ss_pred eeEecCC---------------------------------cee--eecC-Ccceeee---ccccceEEEEecCCC-EEEE
Q 012367 286 VPVVIPD---------------------------------EVF--QIEE-SPLQELH---GHKGDVLDLAWSNSN-YLLS 325 (465)
Q Consensus 286 ~~~~~~~---------------------------------~~~--~~~~-~~~~~~~---gh~~~V~~l~~s~~~-~l~s 325 (465)
....... .++ ++.. .....+. .|...+..++| |++ +|++
T Consensus 224 ~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~ 302 (741)
T 2ecf_A 224 AYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSF 302 (741)
T ss_dssp EEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEE
T ss_pred EEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEE
Confidence 1111000 122 2222 2222222 47788999999 986 5665
Q ss_pred EeC-----CCeEEEEeCCCCeEeEEec-CCC----ceEEEEEccCCCCEEEEEeCCCcEEEEeCC-CCeEEecccCCCCe
Q 012367 326 CSM-----DKTVRMWQVGCNQCLNVFD-HHN----YVTCVQFNPIDDNYFISGSIDGKVRIWGVC-EKRVVDWADVRDVI 394 (465)
Q Consensus 326 ~s~-----DgtV~lWD~~~~~~l~~~~-h~~----~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~-~~~~~~~~~~~~~V 394 (465)
++. +..|++||+.++++...+. +.. .+..++|+| +++++++++.|+.++||.+. .+....+..+...|
T Consensus 303 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v 381 (741)
T 2ecf_A 303 QRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLD-DGSILWSSERTGFQHLYRIDSKGKAAALTHGNWSV 381 (741)
T ss_dssp EEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECT-TSCEEEEECTTSSCEEEEECSSSCEEESCCSSSCE
T ss_pred EEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECC-CCeEEEEecCCCccEEEEEcCCCCeeeeeecceEE
Confidence 543 5789999999998877774 222 456899999 89999999999988887664 33355677777888
Q ss_pred EEE-EEeeCCCEEEEE-EcCC--cEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc
Q 012367 395 SAI-CYIPDGKGFIVG-SITG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY 454 (465)
Q Consensus 395 ~sv-~~spdg~~l~sg-s~dG--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~ 454 (465)
..+ .|+|+|+.|+.. +.++ .+++|++.........+.. ...+..+.|+|+|.+
T Consensus 382 ~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-------~~~~~~~~~spdg~~ 438 (741)
T 2ecf_A 382 DELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-------APGMHSASFARNASV 438 (741)
T ss_dssp EEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-------SCSEEEEEECTTSSE
T ss_pred EeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-------CCCceEEEECCCCCE
Confidence 887 599999977654 4455 8999998743222222211 234678889998865
No 153
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.50 E-value=3.9e-14 Score=152.72 Aligned_cols=178 Identities=8% Similarity=0.073 Sum_probs=125.4
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeee
Q 012367 227 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH 306 (465)
Q Consensus 227 ~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (465)
.++|+|+|++++++ .|++|++||+.++... ..+.
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~---------------------------------------------~~~~ 53 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSY---------------------------------------------TILS 53 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEE---------------------------------------------EEEC
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEE---------------------------------------------EEEc
Confidence 78999999766654 6999999999875331 2222
Q ss_pred cccc---ceEEEEecCCC-EEEEEeC---------CCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCc
Q 012367 307 GHKG---DVLDLAWSNSN-YLLSCSM---------DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK 373 (465)
Q Consensus 307 gh~~---~V~~l~~s~~~-~l~s~s~---------DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~ 373 (465)
+|.. .|.+++|+|++ +|++++. +++|++||+.+++.+........+..++|+| +++.|+.+. ++.
T Consensus 54 ~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SP-DG~~la~~~-~~~ 131 (719)
T 1z68_A 54 NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSP-VGSKLAYVY-QNN 131 (719)
T ss_dssp HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECS-STTCEEEEE-TTE
T ss_pred cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECC-CCCEEEEEE-CCe
Confidence 3332 48899999986 6777765 7899999999998732222345789999999 999999886 789
Q ss_pred EEEEeCCCCeEEecc--cCCCCe-----------------EEEEEeeCCCEEEEEEcCC---------------------
Q 012367 374 VRIWGVCEKRVVDWA--DVRDVI-----------------SAICYIPDGKGFIVGSITG--------------------- 413 (465)
Q Consensus 374 I~iwd~~~~~~~~~~--~~~~~V-----------------~sv~~spdg~~l~sgs~dG--------------------- 413 (465)
|++||+.++....+. ++...| .+++|+|||+.|++++.|.
T Consensus 132 i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~ 211 (719)
T 1z68_A 132 IYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTIN 211 (719)
T ss_dssp EEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEE
T ss_pred EEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCcccee
Confidence 999999887765532 222222 5899999999999988652
Q ss_pred -------------cEEEEEecCCcee-eeEeeecCcccccCCceeeEEEeecC
Q 012367 414 -------------TCHFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQGRISK 452 (465)
Q Consensus 414 -------------~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~It~~~f~p~g 452 (465)
.|++||+.+++.. ...+........+...+.++.|+|++
T Consensus 212 ~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~ 264 (719)
T 1z68_A 212 IPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE 264 (719)
T ss_dssp EECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS
T ss_pred ecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCC
Confidence 6778888776531 00111100111234568888898885
No 154
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.49 E-value=5.2e-13 Score=125.91 Aligned_cols=141 Identities=14% Similarity=0.062 Sum_probs=102.9
Q ss_pred eeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCC-CeEeEEec-C-CCceEEEEEccCCCCEEEEEeC--CCcEEE--
Q 012367 305 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-NQCLNVFD-H-HNYVTCVQFNPIDDNYFISGSI--DGKVRI-- 376 (465)
Q Consensus 305 ~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~-~~~l~~~~-h-~~~V~~i~fsp~~~~~l~sgs~--Dg~I~i-- 376 (465)
+..|...|.+++|+|++ +|++++ ++.|++||+.+ ++...... + ...|.+++|+| ++++|++++. ++.++|
T Consensus 37 ~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~ 114 (297)
T 2ojh_A 37 VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-DGALYAISDKVEFGKSAIYL 114 (297)
T ss_dssp EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEE
T ss_pred eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC-CCCEEEEEEeCCCCcceEEE
Confidence 44578899999999986 566655 88999999998 77766663 3 36889999999 9999999983 344455
Q ss_pred EeCCCCeEEecccCCCCeEEEEEeeCCCEEE-EEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc
Q 012367 377 WGVCEKRVVDWADVRDVISAICYIPDGKGFI-VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY 454 (465)
Q Consensus 377 wd~~~~~~~~~~~~~~~V~sv~~spdg~~l~-sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~ 454 (465)
|++.++....+..+ ..+..++|+|+|+.|+ +++.++.+++|++.........+.. ....+.++.|+|++.+
T Consensus 115 ~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~s~dg~~ 186 (297)
T 2ojh_A 115 LPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTH------GEGRNDGPDYSPDGRW 186 (297)
T ss_dssp EETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCC------SSSCEEEEEECTTSSE
T ss_pred EECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEccc------CCCccccceECCCCCE
Confidence 55566665444444 3489999999999887 7788999999997643332222221 2356888999988753
No 155
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.49 E-value=2.7e-13 Score=142.56 Aligned_cols=193 Identities=9% Similarity=0.057 Sum_probs=131.9
Q ss_pred hhccCC-CcEEEEEECCCCCEEEEEeC---CCcEEEEecCC--ceeeeeeecCCCCcccccCCCeEEeccCCCCceeEe-
Q 012367 217 EIQAHK-GCIWTLKFSPDGRYLASGGE---DGVVRIWHVTS--VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV- 289 (465)
Q Consensus 217 ~l~~H~-~~I~~l~fspdg~~LaSgs~---Dg~V~iWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 289 (465)
.+..|. ..|..++|||| +++++++. +...+||.+.. .............. ...+.........+.
T Consensus 58 ~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~~~~-------~~~~s~dg~~~~~~s~ 129 (582)
T 3o4h_A 58 KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMR-------ILSGVDTGEAVVFTGA 129 (582)
T ss_dssp ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSCSBE-------EEEEEECSSCEEEEEE
T ss_pred eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccccccCCCCce-------eeeeCCCCCeEEEEec
Confidence 344555 68999999999 88888876 56677776543 11111111111100 111111111111111
Q ss_pred cCC--ceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCC----CeEEEEeCCCCeEeEEecCCCceEEEEEccCCC
Q 012367 290 IPD--EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMD----KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDD 362 (465)
Q Consensus 290 ~~~--~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~D----gtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~ 362 (465)
..+ .+|++.......+..+.. .+++|+|+| +|++++.| .+|++||+.+++......|...+..++|+| |+
T Consensus 130 ~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~Sp-DG 206 (582)
T 3o4h_A 130 TEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISP-GM 206 (582)
T ss_dssp CSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECT-TS
T ss_pred CCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECC-CC
Confidence 111 144554444444444433 789999986 77777777 789999999888776667888999999999 99
Q ss_pred CEEEEEeCCC--cEEEEeCCCCeEEecccCCCCeEEEE--------EeeCCCEEEEEEcCCcEEEEEe
Q 012367 363 NYFISGSIDG--KVRIWGVCEKRVVDWADVRDVISAIC--------YIPDGKGFIVGSITGTCHFYKA 420 (465)
Q Consensus 363 ~~l~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~V~sv~--------~spdg~~l~sgs~dG~v~iwd~ 420 (465)
++|+++..++ .|++||+.+++.....++...+..++ |+|||..+++++.+|++++|++
T Consensus 207 ~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 207 KVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp CEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred CEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 9999888888 89999999888776666777777777 9999999999999999999999
No 156
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.48 E-value=2.1e-12 Score=125.50 Aligned_cols=208 Identities=8% Similarity=0.000 Sum_probs=132.4
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCC--CCcc-cccCCCe-EEeccCCCCceeEecCCceeeec-CCc
Q 012367 227 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDD--GGFG-SNAKEGK-IKFGKKKSSHVPVVIPDEVFQIE-ESP 301 (465)
Q Consensus 227 ~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~--~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~ 301 (465)
.+++++++.++++++.+++|.+||+.++.......... .... .....+. +.+.........+ ++.. .+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~------~d~~t~~~ 77 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG------IDLDTCKN 77 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEE------EETTTTEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEE------EeCCCCcE
Confidence 46788999999999999999999999887665544332 1111 1111111 1111111111111 2221 222
Q ss_pred ceeeec-c-----ccceEEEEecCCC-EEEEEeCC------------CeEEEEeCCCC---eEeEEecCCCceEEEEEcc
Q 012367 302 LQELHG-H-----KGDVLDLAWSNSN-YLLSCSMD------------KTVRMWQVGCN---QCLNVFDHHNYVTCVQFNP 359 (465)
Q Consensus 302 ~~~~~g-h-----~~~V~~l~~s~~~-~l~s~s~D------------gtV~lWD~~~~---~~l~~~~h~~~V~~i~fsp 359 (465)
+..+.. + ...+.+++|+|++ +|++++.+ +.|.+||+.++ +.+..+.+...+.+++|+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~ 157 (349)
T 1jmx_B 78 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD 157 (349)
T ss_dssp EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT
T ss_pred EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECC
Confidence 333332 2 2347889999986 77777755 89999999884 4455666667899999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEecccCC------------------------------------------------
Q 012367 360 IDDNYFISGSIDGKVRIWGVCEKRVVDWADVR------------------------------------------------ 391 (465)
Q Consensus 360 ~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~------------------------------------------------ 391 (465)
+++ +++++ +.|.+||+.++++.......
T Consensus 158 -dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 233 (349)
T 1jmx_B 158 -DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY 233 (349)
T ss_dssp -TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred -CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccce
Confidence 888 55544 44999999887765422111
Q ss_pred ---------------------CCeEEEEEee-CCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEe
Q 012367 392 ---------------------DVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGR 449 (465)
Q Consensus 392 ---------------------~~V~sv~~sp-dg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~ 449 (465)
..+.+++|+| +|+.++++ ++.|.+||+.+++... .+.. ...+.++.|+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~-~~~~-------~~~~~~~~~s 303 (349)
T 1jmx_B 234 GYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIK-AANL-------DHTYYCVAFD 303 (349)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEE-EEEC-------SSCCCEEEEC
T ss_pred eEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEE-EEcC-------CCCccceEEC
Confidence 1345677889 99999988 8899999998876532 2221 1245678888
Q ss_pred ecCCc
Q 012367 450 ISKNY 454 (465)
Q Consensus 450 p~gs~ 454 (465)
|+|.+
T Consensus 304 ~dg~~ 308 (349)
T 1jmx_B 304 KKGDK 308 (349)
T ss_dssp SSSSC
T ss_pred CCCCE
Confidence 88654
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.46 E-value=1.4e-11 Score=121.09 Aligned_cols=185 Identities=14% Similarity=0.179 Sum_probs=120.7
Q ss_pred CCCcEEEEEECCCCCEEEEEe-CCCcEEEEecCCcee----e-eeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367 221 HKGCIWTLKFSPDGRYLASGG-EDGVVRIWHVTSVAA----S-CKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaSgs-~Dg~V~iWd~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (465)
+...+.+++|+|+|++|+.++ .++.|.+|++..... . ....
T Consensus 153 ~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~--------------------------------- 199 (361)
T 3scy_A 153 TMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK--------------------------------- 199 (361)
T ss_dssp SSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE---------------------------------
T ss_pred CCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec---------------------------------
Confidence 344578999999999766555 589999999875321 0 0000
Q ss_pred eeecCCcceeeeccccceEEEEecCCC-EEEEEe-CCCeEEEEeCCCCeE--eEEec----CCCceEEEEEccCCCCEEE
Q 012367 295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVGCNQC--LNVFD----HHNYVTCVQFNPIDDNYFI 366 (465)
Q Consensus 295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s-~DgtV~lWD~~~~~~--l~~~~----h~~~V~~i~fsp~~~~~l~ 366 (465)
.........+...+..++|+|++ ++++++ .++.|.+||+.++.. +..+. +...+..++|+| ++++|+
T Consensus 200 ----~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp-dg~~l~ 274 (361)
T 3scy_A 200 ----GTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP-DGKYLY 274 (361)
T ss_dssp ----EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT-TSSEEE
T ss_pred ----ccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC-CCCEEE
Confidence 00000111233456789999987 565555 689999999987754 22222 334578999999 999887
Q ss_pred EEeCC--CcEEEEeCC--CCeE--EecccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEec--CCceeeeEeeecCccc
Q 012367 367 SGSID--GKVRIWGVC--EKRV--VDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKAS--GNDLKLEKVDFHDRKK 437 (465)
Q Consensus 367 sgs~D--g~I~iwd~~--~~~~--~~~~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~--~~~~~~~~~~~~~~~~ 437 (465)
++..+ +.|.+|++. ++.. +........+..++|+|||++|++++ .++.|.+|+++ ++++.. +. ..
T Consensus 275 v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~--~~----~~ 348 (361)
T 3scy_A 275 ASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTD--IK----KD 348 (361)
T ss_dssp EEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEE--CS----CC
T ss_pred EECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEee--cc----ee
Confidence 66654 899999985 4443 22222256788999999999998888 57999997665 444422 11 01
Q ss_pred ccCCceeeEEEe
Q 012367 438 TSGNKITGIQGR 449 (465)
Q Consensus 438 ~~~~~It~~~f~ 449 (465)
.+...++++.|.
T Consensus 349 ~~~~~p~~v~~~ 360 (361)
T 3scy_A 349 IKVDKPVCLKFV 360 (361)
T ss_dssp EECSSEEEEEEE
T ss_pred eeCCCCeEEEEc
Confidence 122356777765
No 158
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.46 E-value=8.7e-13 Score=148.40 Aligned_cols=159 Identities=7% Similarity=0.026 Sum_probs=135.9
Q ss_pred hhccCCC-cEEEEEECCCCCEEEEEeCCCcEE-EEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367 217 EIQAHKG-CIWTLKFSPDGRYLASGGEDGVVR-IWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (465)
Q Consensus 217 ~l~~H~~-~I~~l~fspdg~~LaSgs~Dg~V~-iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (465)
.+..|.+ .+..++|+ +|+.|++++.++.|. +|++.+..
T Consensus 331 ~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~--------------------------------------- 370 (1045)
T 1k32_A 331 KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK--------------------------------------- 370 (1045)
T ss_dssp ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC---------------------------------------
T ss_pred EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC---------------------------------------
Confidence 3567888 89999999 999999999988888 88876532
Q ss_pred eeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCC
Q 012367 295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG 372 (465)
Q Consensus 295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg 372 (465)
...+.+|...+..++|+|++ +|++++.++.|++||+.+++..... .|...|.+++|+| ++++|++++.++
T Consensus 371 -------~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~ 442 (1045)
T 1k32_A 371 -------AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLK 442 (1045)
T ss_dssp -------EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEEC
T ss_pred -------ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECC-CCCeEEEEecCc
Confidence 12233677889999999986 8889999999999999999988877 6888999999999 999999887754
Q ss_pred ----------cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367 373 ----------KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN 423 (465)
Q Consensus 373 ----------~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~ 423 (465)
.|++||+.+++...+..|...+.+++|+|||+.|++++.++...+|+....
T Consensus 443 ~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~ 503 (1045)
T 1k32_A 443 HGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL 503 (1045)
T ss_dssp SSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred cccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhcc
Confidence 899999999987778888889999999999999999999888888876543
No 159
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.45 E-value=3.9e-12 Score=125.78 Aligned_cols=188 Identities=11% Similarity=0.044 Sum_probs=126.6
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEecC-CceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT-SVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (465)
+...+..++|+|+|++|++++.+ .|.+|++. ++.....
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~---------------------------------------- 76 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHE---------------------------------------- 76 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEE----------------------------------------
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEe----------------------------------------
Confidence 33467889999999999999988 99999986 4322110
Q ss_pred CcceeeeccccceEEEEecCCCE---EEEEe-------------CCCeEEEEeCC-CCeEeEEec-----CCCceEEEEE
Q 012367 300 SPLQELHGHKGDVLDLAWSNSNY---LLSCS-------------MDKTVRMWQVG-CNQCLNVFD-----HHNYVTCVQF 357 (465)
Q Consensus 300 ~~~~~~~gh~~~V~~l~~s~~~~---l~s~s-------------~DgtV~lWD~~-~~~~l~~~~-----h~~~V~~i~f 357 (465)
.....+ +.+.+++|+|++. ++++. .++++.+|++. .++....+. +...+.+++|
T Consensus 77 ---~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 152 (365)
T 1jof_A 77 ---ASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVF 152 (365)
T ss_dssp ---EEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEE
T ss_pred ---eEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEE
Confidence 000001 1234578899874 33442 68999999997 465544332 4568999999
Q ss_pred ccCCCCEEEEEeC-CCcEEEEeCC-CCeEEe---cc--cCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEec--CCceee
Q 012367 358 NPIDDNYFISGSI-DGKVRIWGVC-EKRVVD---WA--DVRDVISAICYIPDGKGFIVGSI-TGTCHFYKAS--GNDLKL 427 (465)
Q Consensus 358 sp~~~~~l~sgs~-Dg~I~iwd~~-~~~~~~---~~--~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~--~~~~~~ 427 (465)
+| ++++++++.. ++.|++||+. ++++.. .. .+...+..++|+|||+++++++. ++.|.+|++. ++++..
T Consensus 153 sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~ 231 (365)
T 1jof_A 153 DP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVY 231 (365)
T ss_dssp CT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred CC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEE
Confidence 99 9998887664 6799999998 676532 21 23567999999999999988875 7899999886 344432
Q ss_pred --eEee-ecCcccccCC------ceeeEE-EeecCCc
Q 012367 428 --EKVD-FHDRKKTSGN------KITGIQ-GRISKNY 454 (465)
Q Consensus 428 --~~~~-~~~~~~~~~~------~It~~~-f~p~gs~ 454 (465)
..+. +......+.. .+.++. |+|+|.+
T Consensus 232 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~ 268 (365)
T 1jof_A 232 THHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKY 268 (365)
T ss_dssp EEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSE
T ss_pred ccceEEcCCCCcCCcccccccccccccEEEECCCCCE
Confidence 1221 1110001111 578899 9999865
No 160
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.44 E-value=5.4e-12 Score=136.75 Aligned_cols=197 Identities=6% Similarity=0.046 Sum_probs=129.1
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC---------C-
Q 012367 223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP---------D- 292 (465)
Q Consensus 223 ~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~- 292 (465)
.....++|+|+|++|+++ ||+|++||+.++............. .........+...+...+..... .
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDE-FGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTT-CCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhh-hcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 346689999999999997 9999999999887643322221110 00001112222222211111110 0
Q ss_pred -ceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe--cCCCce----------------
Q 012367 293 -EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYV---------------- 352 (465)
Q Consensus 293 -~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~--~h~~~V---------------- 352 (465)
.++++.......+..|.+.+...+|||+| .|+.+ .|+.|++||+.++...+.. ++...+
T Consensus 94 ~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~ 172 (740)
T 4a5s_A 94 YDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA 172 (740)
T ss_dssp EEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred EEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence 14455555555677788899999999987 56655 5789999999888755432 222222
Q ss_pred -EEEEEccCCCCEEEEEeCCC------------------------------------cEEEEeCCC---C---eEEecc-
Q 012367 353 -TCVQFNPIDDNYFISGSIDG------------------------------------KVRIWGVCE---K---RVVDWA- 388 (465)
Q Consensus 353 -~~i~fsp~~~~~l~sgs~Dg------------------------------------~I~iwd~~~---~---~~~~~~- 388 (465)
..+.|+| |+++|+.++.|. .|++||+.+ + +...+.
T Consensus 173 ~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~ 251 (740)
T 4a5s_A 173 YSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITA 251 (740)
T ss_dssp SBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECC
T ss_pred CcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecC
Confidence 3489999 999999886432 488899988 7 444443
Q ss_pred -----cCCCCeEEEEEeeCCCEEEEEEcC----CcEEEEEecCCc
Q 012367 389 -----DVRDVISAICYIPDGKGFIVGSIT----GTCHFYKASGND 424 (465)
Q Consensus 389 -----~~~~~V~sv~~spdg~~l~sgs~d----G~v~iwd~~~~~ 424 (465)
++...+..++|+|||+.++..... ..|.+||+.+++
T Consensus 252 ~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 252 PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 377789999999999977665442 379999999876
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.41 E-value=2.7e-13 Score=146.11 Aligned_cols=153 Identities=12% Similarity=0.134 Sum_probs=112.5
Q ss_pred cEEEEEECCCCCEEEEEeC---------CCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367 224 CIWTLKFSPDGRYLASGGE---------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (465)
Q Consensus 224 ~I~~l~fspdg~~LaSgs~---------Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (465)
.|.+++|||||++||+++. |+.|++||+.++.....
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~----------------------------------- 105 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG----------------------------------- 105 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-----------------------------------
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc-----------------------------------
Confidence 4899999999999999887 79999999987543100
Q ss_pred eeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec--CCCce-----------------EE
Q 012367 295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYV-----------------TC 354 (465)
Q Consensus 295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~--h~~~V-----------------~~ 354 (465)
..+ ...+..++|+|+| .|++++ |+.|++||+.++.+..... +...| .+
T Consensus 106 --------~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 106 --------NEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp --------SCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred --------eec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence 001 1347789999987 566654 7899999999887655431 22222 48
Q ss_pred EEEccCCCCEEEEEeCCC----------------------------------cEEEEeCCCCeEE---e------cccCC
Q 012367 355 VQFNPIDDNYFISGSIDG----------------------------------KVRIWGVCEKRVV---D------WADVR 391 (465)
Q Consensus 355 i~fsp~~~~~l~sgs~Dg----------------------------------~I~iwd~~~~~~~---~------~~~~~ 391 (465)
++|+| |+++|++++.|. .|++||+.++... . +.++.
T Consensus 174 ~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 252 (719)
T 1z68_A 174 LWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD 252 (719)
T ss_dssp EEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred EEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence 99999 999999988663 7889999987642 2 23577
Q ss_pred CCeEEEEEeeCCCEEEEEEcCC----cEEEEE----ecCCc
Q 012367 392 DVISAICYIPDGKGFIVGSITG----TCHFYK----ASGND 424 (465)
Q Consensus 392 ~~V~sv~~spdg~~l~sgs~dG----~v~iwd----~~~~~ 424 (465)
..+.+++|+||++.+++....+ .|.+|| +.+++
T Consensus 253 ~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~ 293 (719)
T 1z68_A 253 YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD 293 (719)
T ss_dssp EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE
T ss_pred ceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc
Confidence 7899999999988777754332 478888 65544
No 162
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.40 E-value=5.3e-12 Score=121.82 Aligned_cols=144 Identities=9% Similarity=0.090 Sum_probs=114.1
Q ss_pred CEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeee-cccc-ce
Q 012367 235 RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH-GHKG-DV 312 (465)
Q Consensus 235 ~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~-~V 312 (465)
++|++++.++.|.+||+.++.... .+. ++.. .+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~---------------------------------------------~~~~~~~~~~~ 36 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDK---------------------------------------------VITIADAGPTP 36 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEE---------------------------------------------EEECTTCTTCC
T ss_pred cEEEEcCCCCeEEEEECCCCcEEE---------------------------------------------EEEcCCCCCCc
Confidence 479999999999999998754322 111 1211 36
Q ss_pred EEEEecCCC-E-EEEEeCCCeEEEEeCCCCeEeEEecCCC------ceEEEEEccCCCCEEEEEe------------CCC
Q 012367 313 LDLAWSNSN-Y-LLSCSMDKTVRMWQVGCNQCLNVFDHHN------YVTCVQFNPIDDNYFISGS------------IDG 372 (465)
Q Consensus 313 ~~l~~s~~~-~-l~s~s~DgtV~lWD~~~~~~l~~~~h~~------~V~~i~fsp~~~~~l~sgs------------~Dg 372 (465)
..++|+|++ . +++++.++.|.+||+.+++.+..+.... .+.+++|+| +++++++++ .++
T Consensus 37 ~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~ 115 (337)
T 1pby_B 37 MVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPT 115 (337)
T ss_dssp CCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCC
T ss_pred cceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCc
Confidence 778999986 4 4566678999999999999888776433 678999999 998888886 579
Q ss_pred cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367 373 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK 426 (465)
Q Consensus 373 ~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~ 426 (465)
.|.+||+.+++..........+.+++|+|+|++|+++ ++.|.+||+.+++..
T Consensus 116 ~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~ 167 (337)
T 1pby_B 116 RVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLV 167 (337)
T ss_dssp EEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEE
T ss_pred eEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEe
Confidence 9999999998877655556678899999999988888 789999999887653
No 163
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.39 E-value=1.3e-10 Score=110.10 Aligned_cols=224 Identities=8% Similarity=0.049 Sum_probs=139.9
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec---CCcee
Q 012367 219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI---PDEVF 295 (465)
Q Consensus 219 ~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 295 (465)
.+|-....+|+++++|+++++.+.++.|.+||.... ....................+.+.. ......+.. ...+.
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~-~~~~~~~~~~~~~~~~~p~~i~~~~-~~g~l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR-FKFQFGECGKRDSQLLYPNRVAVVR-NSGDIIVTERSPTHQIQ 103 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSC-EEEEECCBSSSTTCBSSEEEEEEET-TTTEEEEEECGGGCEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCCCc-EEEEecccCCCcccccCceEEEEEc-CCCeEEEEcCCCCCEEE
Confidence 367778999999999999999899999999998743 2222211100000000001111100 111111111 11222
Q ss_pred ee--cCCcceeee-ccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec---CCCceEEEEEccCCCCEEEEE
Q 012367 296 QI--EESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISG 368 (465)
Q Consensus 296 ~~--~~~~~~~~~-gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~---h~~~V~~i~fsp~~~~~l~sg 368 (465)
.+ ....+..+. .+...+.++++++++ ++++...++.|.+||.. ++.+..+. +...+..++++| +++++++.
T Consensus 104 ~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~ 181 (286)
T 1q7f_A 104 IYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVND-KQEIFISD 181 (286)
T ss_dssp EECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECS-SSEEEEEE
T ss_pred EECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECC-CCCEEEEE
Confidence 21 223333332 244578899999876 55666678999999964 66666663 445789999999 88888888
Q ss_pred eCCCcEEEEeCCCCeEEeccc--CCCCeEEEEEeeCCCEEEEEEcCC-cEEEEEecCCceeeeEeeecCcccccCCceee
Q 012367 369 SIDGKVRIWGVCEKRVVDWAD--VRDVISAICYIPDGKGFIVGSITG-TCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 445 (465)
Q Consensus 369 s~Dg~I~iwd~~~~~~~~~~~--~~~~V~sv~~spdg~~l~sgs~dG-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~ 445 (465)
..++.|++||.....+..+.. +...+..++++|+|+++++...++ .|.+|+..+..+ ..+..+. ....+.+
T Consensus 182 ~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~--~~~~~~~----~~~~~~~ 255 (286)
T 1q7f_A 182 NRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLI--SALESKV----KHAQCFD 255 (286)
T ss_dssp GGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEE--EEEEESS----CCSCEEE
T ss_pred CCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEE--EEEcccC----CCCccee
Confidence 889999999986554444433 236789999999998888887776 999999754432 2332222 1234667
Q ss_pred EEEeecC
Q 012367 446 IQGRISK 452 (465)
Q Consensus 446 ~~f~p~g 452 (465)
+.+.|+|
T Consensus 256 i~~~~~g 262 (286)
T 1q7f_A 256 VALMDDG 262 (286)
T ss_dssp EEEETTT
T ss_pred EEECCCC
Confidence 7777765
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.38 E-value=1.2e-11 Score=122.35 Aligned_cols=187 Identities=13% Similarity=0.091 Sum_probs=131.6
Q ss_pred hhhccCCCcEEE-----EEECCCCCEEEEEeC-CCc--EEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCcee
Q 012367 216 QEIQAHKGCIWT-----LKFSPDGRYLASGGE-DGV--VRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 287 (465)
Q Consensus 216 ~~l~~H~~~I~~-----l~fspdg~~LaSgs~-Dg~--V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (465)
..+..|.+.... .+|||||++||.++. +|. |.+||+.++...
T Consensus 24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~------------------------------ 73 (388)
T 3pe7_A 24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT------------------------------ 73 (388)
T ss_dssp EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE------------------------------
T ss_pred EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE------------------------------
Confidence 445566666665 899999999999987 774 777787764321
Q ss_pred EecCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEE--EccCCCC
Q 012367 288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQ--FNPIDDN 363 (465)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~--fsp~~~~ 363 (465)
....+|...+..++|+|++ .|+.++.++.|++||+.+++....+. +...+.... ++| ++.
T Consensus 74 ---------------~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~-dg~ 137 (388)
T 3pe7_A 74 ---------------QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANS-DCT 137 (388)
T ss_dssp ---------------ECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECT-TSS
T ss_pred ---------------EeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECC-CCC
Confidence 1222344444467899986 88899999999999999998777665 444454443 478 888
Q ss_pred EEEEE----------------------eCCCcEEEEeCCCCeEEecccCCCCeEEEEEee-CCCEEEEEEcC------Cc
Q 012367 364 YFISG----------------------SIDGKVRIWGVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSIT------GT 414 (465)
Q Consensus 364 ~l~sg----------------------s~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~sp-dg~~l~sgs~d------G~ 414 (465)
+++.. ..+..|.+||+.+++...+..+...+..++|+| ||+.|+..... ..
T Consensus 138 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~ 217 (388)
T 3pe7_A 138 KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDAR 217 (388)
T ss_dssp EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCS
T ss_pred eeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcce
Confidence 88743 234679999999998887777888899999999 99998887764 36
Q ss_pred EEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc
Q 012367 415 CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY 454 (465)
Q Consensus 415 v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~ 454 (465)
|.++|+.+..... +..+. ....+....|+|+|..
T Consensus 218 l~~~d~~~~~~~~--l~~~~----~~~~~~~~~~spdg~~ 251 (388)
T 3pe7_A 218 MWLINEDGTNMRK--VKTHA----EGESCTHEFWVPDGSA 251 (388)
T ss_dssp EEEEETTSCCCEE--SCCCC----TTEEEEEEEECTTSSC
T ss_pred EEEEeCCCCceEE--eeeCC----CCcccccceECCCCCE
Confidence 7777776654321 11111 1124667788888764
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.34 E-value=1e-10 Score=115.48 Aligned_cols=161 Identities=12% Similarity=0.088 Sum_probs=115.4
Q ss_pred CCCcEEEEEECCCCCEEEEEeC-CCcEEEEecC-CceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec
Q 012367 221 HKGCIWTLKFSPDGRYLASGGE-DGVVRIWHVT-SVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 298 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaSgs~-Dg~V~iWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (465)
+...+.+++|+|+|++|+++.. ++.|++|++. ++....
T Consensus 143 ~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~---------------------------------------- 182 (365)
T 1jof_A 143 ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVEL---------------------------------------- 182 (365)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEE----------------------------------------
T ss_pred CCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEE----------------------------------------
Confidence 5567999999999998887764 6899999997 432210
Q ss_pred CCcceeee--ccccceEEEEecCCC-EEEEEe-CCCeEEEEeCC--CCeEeE---Eec--------CCC------ceEEE
Q 012367 299 ESPLQELH--GHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVG--CNQCLN---VFD--------HHN------YVTCV 355 (465)
Q Consensus 299 ~~~~~~~~--gh~~~V~~l~~s~~~-~l~s~s-~DgtV~lWD~~--~~~~l~---~~~--------h~~------~V~~i 355 (465)
+..+. .|...+..++|+|++ +|++++ .+++|.+|++. +++... .+. |.. .+..+
T Consensus 183 ---~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i 259 (365)
T 1jof_A 183 ---VGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADV 259 (365)
T ss_dssp ---EEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEE
T ss_pred ---eeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccE
Confidence 11111 234568899999987 666665 47899999764 565422 221 121 58899
Q ss_pred E-EccCCCCEEEEEeCCC------cEEEEeCC-CCeEEe----cccCCCCeEEEEEee---CCCEEEEEEcC-CcEEEEE
Q 012367 356 Q-FNPIDDNYFISGSIDG------KVRIWGVC-EKRVVD----WADVRDVISAICYIP---DGKGFIVGSIT-GTCHFYK 419 (465)
Q Consensus 356 ~-fsp~~~~~l~sgs~Dg------~I~iwd~~-~~~~~~----~~~~~~~V~sv~~sp---dg~~l~sgs~d-G~v~iwd 419 (465)
+ |+| ++++|++++.+. .|.+|++. ++++.. ...+...+..++|+| ||++|++++.+ +.|.+|+
T Consensus 260 ~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 260 CALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR 338 (365)
T ss_dssp EEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred EEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEE
Confidence 9 999 999887766433 89999996 566543 222455678899999 89999999875 8999999
Q ss_pred ecCCce
Q 012367 420 ASGNDL 425 (465)
Q Consensus 420 ~~~~~~ 425 (465)
+....+
T Consensus 339 ~~~~~l 344 (365)
T 1jof_A 339 WKDEFL 344 (365)
T ss_dssp EETTEE
T ss_pred EchhhC
Confidence 987744
No 166
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.33 E-value=2e-11 Score=121.09 Aligned_cols=183 Identities=5% Similarity=-0.007 Sum_probs=128.5
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcce
Q 012367 224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 303 (465)
Q Consensus 224 ~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (465)
+++.+++++...++++|+.|+ +++|++......... ... . ..+..
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~--~~~---------------------------~-----~~~~~ 83 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITS--DST---------------------------P-----LTFKW 83 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHS--SSC---------------------------C-----CCCSE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhcc--ccc---------------------------c-----ccceE
Confidence 689999999999999999986 566997653211000 000 0 01111
Q ss_pred eeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCC
Q 012367 304 ELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 382 (465)
Q Consensus 304 ~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~ 382 (465)
.. .+.. |..++| .+.+|+++ .++.|++||+.+....... .|...|.++.+.+ . .++++..||.|.+||+.++
T Consensus 84 ~~-~lp~-V~~l~f-d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~ 156 (388)
T 1xip_A 84 EK-EIPD-VIFVCF-HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTK 156 (388)
T ss_dssp EE-ECTT-EEEEEE-ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTC
T ss_pred Ee-eCCC-eeEEEE-CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccCC
Confidence 12 3556 999999 55677777 8899999999876544444 4677788888766 2 3888899999999999987
Q ss_pred eEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCcee-eeEeeecCccc---ccCCceeeEEEeecCC
Q 012367 383 RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK-LEKVDFHDRKK---TSGNKITGIQGRISKN 453 (465)
Q Consensus 383 ~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~-~~~~~~~~~~~---~~~~~It~~~f~p~gs 453 (465)
.... +...|++++|+|+| +++|..||++++|+..+.... ...+....... .+...+.+++|.+++.
T Consensus 157 ~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~ 226 (388)
T 1xip_A 157 STKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQD 226 (388)
T ss_dssp CEEE---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSE
T ss_pred cccc---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCe
Confidence 7654 45689999999999 788999999999999887642 22332111111 1347899998887644
No 167
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.32 E-value=6.4e-11 Score=126.20 Aligned_cols=210 Identities=11% Similarity=0.063 Sum_probs=135.7
Q ss_pred hhhhccCCCcEEEEEECCCCCEEEEE--eCCCcEEEEecCCceeeeeeecCCCCcc-cccC--CCeEEec--cCCCC-ce
Q 012367 215 SQEIQAHKGCIWTLKFSPDGRYLASG--GEDGVVRIWHVTSVAASCKSFTDDGGFG-SNAK--EGKIKFG--KKKSS-HV 286 (465)
Q Consensus 215 ~~~l~~H~~~I~~l~fspdg~~LaSg--s~Dg~V~iWd~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~--~~~~~-~~ 286 (465)
.+.+.+|...|..++|++++.++++. +.++...||.+................. .... ....... ..+.. ..
T Consensus 16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence 45677899999999999987778887 6789999999643322222111111100 0000 0001011 11111 11
Q ss_pred eEec-CCceeeec-C----Ccceeeec-----cccceEEEEecCCC-EEEEEeCC----------CeEEEEeCCC-----
Q 012367 287 PVVI-PDEVFQIE-E----SPLQELHG-----HKGDVLDLAWSNSN-YLLSCSMD----------KTVRMWQVGC----- 339 (465)
Q Consensus 287 ~~~~-~~~~~~~~-~----~~~~~~~g-----h~~~V~~l~~s~~~-~l~s~s~D----------gtV~lWD~~~----- 339 (465)
.... ...+|.+. . .....+.. |...+.+++|+|++ .|++++.| .+|++||+.+
T Consensus 96 ~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 175 (662)
T 3azo_A 96 FTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD 175 (662)
T ss_dssp EEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred EEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence 1111 22344443 1 34445555 67789999999986 78877776 5899999988
Q ss_pred -CeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCC--------cEEEEeCC-CC---eEEeccc-CCCCeEEEEEeeCCC
Q 012367 340 -NQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG--------KVRIWGVC-EK---RVVDWAD-VRDVISAICYIPDGK 404 (465)
Q Consensus 340 -~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg--------~I~iwd~~-~~---~~~~~~~-~~~~V~sv~~spdg~ 404 (465)
+...... .+...+..++|+| |+++|+.++.++ .|++||+. ++ ....+.. +...+..++|+|||+
T Consensus 176 ~~~~~~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~ 254 (662)
T 3azo_A 176 RSAVRELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS 254 (662)
T ss_dssp GGGSEESSCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC
T ss_pred CCceeEEEecCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe
Confidence 6655555 5667888999999 999999887553 79999998 56 5555443 467899999999999
Q ss_pred EEEEEEcCC--cEEEEEecCCce
Q 012367 405 GFIVGSITG--TCHFYKASGNDL 425 (465)
Q Consensus 405 ~l~sgs~dG--~v~iwd~~~~~~ 425 (465)
+++++..+| .|.+||+.+++.
T Consensus 255 l~~~~~~~~~~~l~~~~~~~~~~ 277 (662)
T 3azo_A 255 LIVATDRTGWWNLHRVDPATGAA 277 (662)
T ss_dssp EEEEECTTSSCEEEEECTTTCCE
T ss_pred EEEEECCCCCeEEEEEECCCCce
Confidence 888888888 455555545543
No 168
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.29 E-value=5.5e-10 Score=108.64 Aligned_cols=219 Identities=13% Similarity=0.118 Sum_probs=140.1
Q ss_pred CCcEEEEEECCCCCEEEEEeCC------------------------CcEEEEecCCceeeeeeecCC--CCc-ccccCCC
Q 012367 222 KGCIWTLKFSPDGRYLASGGED------------------------GVVRIWHVTSVAASCKSFTDD--GGF-GSNAKEG 274 (465)
Q Consensus 222 ~~~I~~l~fspdg~~LaSgs~D------------------------g~V~iWd~~~~~~~~~~~~~~--~~~-~~~~~~~ 274 (465)
-+.|.+|+++|+|+++++.+.+ ++|.+||..++.......... ... ......+
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4679999999999999988887 479999998766543221110 000 0111122
Q ss_pred eEEeccCCCCceeEecCCceeeecCC--cceee---------eccccceEEEEecC-CC-EEEEEe-CCCeEEEEeCCCC
Q 012367 275 KIKFGKKKSSHVPVVIPDEVFQIEES--PLQEL---------HGHKGDVLDLAWSN-SN-YLLSCS-MDKTVRMWQVGCN 340 (465)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---------~gh~~~V~~l~~s~-~~-~l~s~s-~DgtV~lWD~~~~ 340 (465)
.+.+.......+..+.+ ... .+..+ .++...+..++++| ++ ++++.+ .++.|++|| .++
T Consensus 103 ~l~v~d~~~~~v~~~~~------~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g 175 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDP------HSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSG 175 (329)
T ss_dssp CEEEEETTTTEEEEECT------TCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTS
T ss_pred CEEEEECCCCEEEEEeC------CCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCC
Confidence 22222222222222211 122 33333 24555789999998 66 555554 589999999 567
Q ss_pred eEeEEecCC-----------CceEEEEEccCC-CCEEEEEeCCCcEEEEeCCCCeEEec---ccCCCCeEEEEEee----
Q 012367 341 QCLNVFDHH-----------NYVTCVQFNPID-DNYFISGSIDGKVRIWGVCEKRVVDW---ADVRDVISAICYIP---- 401 (465)
Q Consensus 341 ~~l~~~~h~-----------~~V~~i~fsp~~-~~~l~sgs~Dg~I~iwd~~~~~~~~~---~~~~~~V~sv~~sp---- 401 (465)
..+..+... .....|+++| + ++++++...++.|++||..+++.+.. ..+...+.+++|+|
T Consensus 176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~-~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~ 254 (329)
T 3fvz_A 176 KFVTQWGEESSGSSPRPGQFSVPHSLALVP-HLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLF 254 (329)
T ss_dssp CEEEEECEECCSSSCCTTEESCEEEEEEET-TTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEE
T ss_pred CEEEEeccCCCCCCCCCcccCCCcEEEEEC-CCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEE
Confidence 777777421 2489999999 6 88888888899999999997776653 34566789999999
Q ss_pred --CCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC
Q 012367 402 --DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK 452 (465)
Q Consensus 402 --dg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g 452 (465)
+|+..++...++.|++|++.++++.. .+.. .........++.++|+|
T Consensus 255 ~~~g~~~v~~~~~~~v~~~~~~~g~~~~-~~~~---~~~~~~~p~~ia~~~dG 303 (329)
T 3fvz_A 255 AVNGKPYFGDQEPVQGFVMNFSSGEIID-VFKP---VRKHFDMPHDIVASEDG 303 (329)
T ss_dssp EEECCCCTTCSCCCCEEEEETTTCCEEE-EECC---SSSCCSSEEEEEECTTS
T ss_pred EeCCCEEeccCCCcEEEEEEcCCCeEEE-EEcC---CCCccCCeeEEEECCCC
Confidence 33333333345689999998876533 2211 12234668899998886
No 169
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.29 E-value=7.5e-11 Score=116.65 Aligned_cols=166 Identities=9% Similarity=0.018 Sum_probs=116.5
Q ss_pred hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (465)
+...+|...+..+.|+|||++|+.++.++.|.+||+.++......
T Consensus 74 ~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~----------------------------------- 118 (388)
T 3pe7_A 74 QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVY----------------------------------- 118 (388)
T ss_dssp ECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-----------------------------------
T ss_pred EeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeee-----------------------------------
Confidence 344566666667889999999999999999999999876432211
Q ss_pred eecCCcceeeeccccceEEEE--ecCCC-EEEE----------------------EeCCCeEEEEeCCCCeEeEEecCCC
Q 012367 296 QIEESPLQELHGHKGDVLDLA--WSNSN-YLLS----------------------CSMDKTVRMWQVGCNQCLNVFDHHN 350 (465)
Q Consensus 296 ~~~~~~~~~~~gh~~~V~~l~--~s~~~-~l~s----------------------~s~DgtV~lWD~~~~~~l~~~~h~~ 350 (465)
..+...+.... +++++ +++. ...+..|.+||+.+++......+..
T Consensus 119 ----------~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 188 (388)
T 3pe7_A 119 ----------QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQ 188 (388)
T ss_dssp ----------ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESS
T ss_pred ----------echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCc
Confidence 11222222222 24554 2221 2345789999999998777777888
Q ss_pred ceEEEEEccCCCCEEEEEeCC------CcEEEEeCCCCeEEecccCC--CCeEEEEEeeCCCEEEEEEc-CC----cEEE
Q 012367 351 YVTCVQFNPIDDNYFISGSID------GKVRIWGVCEKRVVDWADVR--DVISAICYIPDGKGFIVGSI-TG----TCHF 417 (465)
Q Consensus 351 ~V~~i~fsp~~~~~l~sgs~D------g~I~iwd~~~~~~~~~~~~~--~~V~sv~~spdg~~l~sgs~-dG----~v~i 417 (465)
.+..++|+|.+++.|+..+.+ ..|.++|+.++....+..+. ..+..++|+|||+.|+..+. ++ .|++
T Consensus 189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 268 (388)
T 3pe7_A 189 WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYS 268 (388)
T ss_dssp CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEE
T ss_pred cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEE
Confidence 899999999667777766653 37888888877766655554 35888999999998766554 22 3999
Q ss_pred EEecCCcee
Q 012367 418 YKASGNDLK 426 (465)
Q Consensus 418 wd~~~~~~~ 426 (465)
||+.+++..
T Consensus 269 ~d~~~g~~~ 277 (388)
T 3pe7_A 269 ADPETLENR 277 (388)
T ss_dssp ECTTTCCEE
T ss_pred EecCCCceE
Confidence 999988754
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.28 E-value=7.9e-11 Score=125.46 Aligned_cols=159 Identities=11% Similarity=0.069 Sum_probs=116.4
Q ss_pred CCCcEEEEEECCCCCEEEEEeCC----------CcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec
Q 012367 221 HKGCIWTLKFSPDGRYLASGGED----------GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 290 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaSgs~D----------g~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (465)
|...+..++|||||++||+++.| ..|.+||+.+....
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------------------------------- 174 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA--------------------------------- 174 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT---------------------------------
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc---------------------------------
Confidence 77789999999999999999887 57889988751000
Q ss_pred CCceeeecCCcceeee-ccccceEEEEecCCC-EEEEEeCC--------CeEEEEeCC-CC---eEeEEec-CCCceEEE
Q 012367 291 PDEVFQIEESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMD--------KTVRMWQVG-CN---QCLNVFD-HHNYVTCV 355 (465)
Q Consensus 291 ~~~~~~~~~~~~~~~~-gh~~~V~~l~~s~~~-~l~s~s~D--------gtV~lWD~~-~~---~~l~~~~-h~~~V~~i 355 (465)
.......+. .+...+..++|+|++ +|+.++.+ ..|++||+. ++ ....... +...+..+
T Consensus 175 -------~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~ 247 (662)
T 3azo_A 175 -------DRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQA 247 (662)
T ss_dssp -------CGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEE
T ss_pred -------cCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcce
Confidence 000112222 344677788999987 67766654 479999998 57 4444444 46789999
Q ss_pred EEccCCCCEEEEEeCCC--cEEEEeCCCCeEEecccCCCC---------eEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367 356 QFNPIDDNYFISGSIDG--KVRIWGVCEKRVVDWADVRDV---------ISAICYIPDGKGFIVGSITGTCHFYKAS 421 (465)
Q Consensus 356 ~fsp~~~~~l~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~---------V~sv~~spdg~~l~sgs~dG~v~iwd~~ 421 (465)
.|+| ++++++++..++ .|.+||+.+++...+..+... +.+++|+|+++++++++. |.++||.++
T Consensus 248 ~~sp-dg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 248 EWAP-DGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp EECT-TSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred EECC-CCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 9999 888888888888 677777767776665443322 567899999999999999 999999554
No 171
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.28 E-value=5.3e-10 Score=105.92 Aligned_cols=153 Identities=12% Similarity=0.118 Sum_probs=114.1
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (465)
+...+.+|+++|+|+++++...++.|.+|+.... ..
T Consensus 119 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~------------------------------------------- 154 (286)
T 1q7f_A 119 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-VL------------------------------------------- 154 (286)
T ss_dssp TCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EE-------------------------------------------
T ss_pred cCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-EE-------------------------------------------
Confidence 4456899999999998888888899999996531 11
Q ss_pred cceee--eccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEecC---CCceEEEEEccCCCCEEEEEeCCC-c
Q 012367 301 PLQEL--HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDH---HNYVTCVQFNPIDDNYFISGSIDG-K 373 (465)
Q Consensus 301 ~~~~~--~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h---~~~V~~i~fsp~~~~~l~sgs~Dg-~ 373 (465)
..+ .++...+.++++++++ ++++.+.++.|++||.. +..+..+.. ...+..++++| +++++++...++ .
T Consensus 155 --~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~ 230 (286)
T 1q7f_A 155 --HKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFN 230 (286)
T ss_dssp --EEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCE
T ss_pred --EEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECC-CCCEEEEeCCCCEE
Confidence 111 1234567899999987 45555678999999984 566666643 25789999999 899999888776 9
Q ss_pred EEEEeCCCCeEEecccC--CCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367 374 VRIWGVCEKRVVDWADV--RDVISAICYIPDGKGFIVGSITGTCHFYKASG 422 (465)
Q Consensus 374 I~iwd~~~~~~~~~~~~--~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~ 422 (465)
|.+||.....+..+..+ ...+.+++++|+|+.+++ +.+++|++|++..
T Consensus 231 i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 231 LTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred EEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 99999655444444333 234789999999986666 6799999999754
No 172
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.28 E-value=1.8e-10 Score=113.90 Aligned_cols=90 Identities=12% Similarity=0.055 Sum_probs=67.2
Q ss_pred EEEccCCCCEEEEEeC-----------CCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367 355 VQFNPIDDNYFISGSI-----------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN 423 (465)
Q Consensus 355 i~fsp~~~~~l~sgs~-----------Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~ 423 (465)
++|+| +++.++++.. .+.|.+||+.+++++....... +.+++|+|||++|++++. +.|.+||+.++
T Consensus 259 ~a~~~-dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 259 VGLHR-ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp EEEET-TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred EEEec-CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 67888 7666655432 3489999999999887544444 999999999999999887 99999999998
Q ss_pred ceeee-EeeecCcccccCCceeeEEEeecCC
Q 012367 424 DLKLE-KVDFHDRKKTSGNKITGIQGRISKN 453 (465)
Q Consensus 424 ~~~~~-~~~~~~~~~~~~~~It~~~f~p~gs 453 (465)
+++.. .+. ..+..-.++.++|+|.
T Consensus 336 ~l~~~~~i~------~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 336 EPKLLRTIE------GAAEASLQVQFHPVGG 360 (361)
T ss_dssp SCEEEEEET------TSCSSEEEEEECCCSC
T ss_pred cceeeEEec------cCCCCcEEEEecCCCC
Confidence 44433 221 1235667889999875
No 173
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.23 E-value=9.2e-10 Score=104.97 Aligned_cols=184 Identities=10% Similarity=0.008 Sum_probs=129.0
Q ss_pred hhhccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367 216 QEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (465)
..+..+.....+++|+|+|+ +++++..++.|..|+..+.
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---------------------------------------- 60 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---------------------------------------- 60 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC----------------------------------------
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC----------------------------------------
Confidence 34445666788999999998 8888889999999998763
Q ss_pred eeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-----CCCceEEEEEccCCCCEEEEE
Q 012367 295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISG 368 (465)
Q Consensus 295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-----h~~~V~~i~fsp~~~~~l~sg 368 (465)
...+..+...+.++++++++ ++++...++.|.+||..+++...... ....+..++++| +++++++.
T Consensus 61 -------~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd 132 (296)
T 3e5z_A 61 -------LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAP-DGSLWFSD 132 (296)
T ss_dssp -------EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECT-TSCEEEEE
T ss_pred -------eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECC-CCCEEEEC
Confidence 12222345678899999987 44455556899999998887654432 123567899999 99998873
Q ss_pred ----e-------------CCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec-CCce-eeeE
Q 012367 369 ----S-------------IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS-GNDL-KLEK 429 (465)
Q Consensus 369 ----s-------------~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~-~~~~-~~~~ 429 (465)
. ..+.|..++.. +++.....+...+..++|+|+|+.+++.+.++.|.+|++. ++.+ ....
T Consensus 133 ~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~ 211 (296)
T 3e5z_A 133 PTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGV 211 (296)
T ss_dssp CSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEE
T ss_pred CccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCe
Confidence 2 13456666665 6665566666778999999999999777778999999997 4444 2222
Q ss_pred eeecCcccccCCceeeEEEeecCC
Q 012367 430 VDFHDRKKTSGNKITGIQGRISKN 453 (465)
Q Consensus 430 ~~~~~~~~~~~~~It~~~f~p~gs 453 (465)
.. .. ....+.++.+.++|.
T Consensus 212 ~~-~~----~~~~p~~i~~d~~G~ 230 (296)
T 3e5z_A 212 HF-TV----EPGKTDGLRVDAGGL 230 (296)
T ss_dssp EE-CC----SSSCCCSEEEBTTSC
T ss_pred Ee-eC----CCCCCCeEEECCCCC
Confidence 21 11 223456677766653
No 174
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.23 E-value=1.5e-09 Score=105.08 Aligned_cols=161 Identities=12% Similarity=0.079 Sum_probs=118.0
Q ss_pred hhhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (465)
..+.+|...+.+++|+|+|++++++..++.|.+||..++....
T Consensus 38 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~------------------------------------- 80 (333)
T 2dg1_A 38 LEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR------------------------------------- 80 (333)
T ss_dssp EEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-------------------------------------
T ss_pred EEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE-------------------------------------
Confidence 4455677778999999999988889999999999987643211
Q ss_pred eecCCcceeeeccccceEEEEecCCCE-EEEEeCC----CeEEEEeCCCCeEeEEec---CCCceEEEEEccCCCCEEEE
Q 012367 296 QIEESPLQELHGHKGDVLDLAWSNSNY-LLSCSMD----KTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFIS 367 (465)
Q Consensus 296 ~~~~~~~~~~~gh~~~V~~l~~s~~~~-l~s~s~D----gtV~lWD~~~~~~l~~~~---h~~~V~~i~fsp~~~~~l~s 367 (465)
....+...+.++++++++. ++++..+ +.|.+||..++.....+. +...+.+++++| +++++++
T Consensus 81 --------~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~ 151 (333)
T 2dg1_A 81 --------PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFT 151 (333)
T ss_dssp --------EEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEE
T ss_pred --------EeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEE
Confidence 1113446789999999874 4555555 589999998876553432 445799999999 8888887
Q ss_pred EeC------CCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEE-EcCCcEEEEEecC
Q 012367 368 GSI------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGTCHFYKASG 422 (465)
Q Consensus 368 gs~------Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sg-s~dG~v~iwd~~~ 422 (465)
... .+.|..||..++++..+......+..++|+|+|+.|+++ +.++.|.+|++.+
T Consensus 152 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 152 DFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp ECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred eccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence 654 356777777666655544444568899999999866554 4578999999964
No 175
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.19 E-value=2.8e-10 Score=112.86 Aligned_cols=135 Identities=7% Similarity=0.047 Sum_probs=106.1
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (465)
.+.+ |+.|+| ++++|+++ .++.|++||+.+...
T Consensus 86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~------------------------------------------- 118 (388)
T 1xip_A 86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSE------------------------------------------- 118 (388)
T ss_dssp ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTC-------------------------------------------
T ss_pred eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhc-------------------------------------------
Confidence 4666 999999 99999999 889999999986421
Q ss_pred CcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeC
Q 012367 300 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379 (465)
Q Consensus 300 ~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~ 379 (465)
......|...|.++.+.+.+ +++++.||+|.+||+.++.... +...|+|++|+| +| ++.|..||++++|+.
T Consensus 119 --~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~ 189 (388)
T 1xip_A 119 --FRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAW 189 (388)
T ss_dssp --EEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECS-SE--EEEEETTSCEEEEEE
T ss_pred --cCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcC-Cc--eEEEEcCCcEEEEcC
Confidence 11223455567777776544 8889999999999999887653 456899999999 77 678999999999998
Q ss_pred CCCeE--E-ec------c---cCCCCeEEEEEeeCCCEEEEEE
Q 012367 380 CEKRV--V-DW------A---DVRDVISAICYIPDGKGFIVGS 410 (465)
Q Consensus 380 ~~~~~--~-~~------~---~~~~~V~sv~~spdg~~l~sgs 410 (465)
.++.+ . .+ . +|...|.+|+|.+++.++++=+
T Consensus 190 ~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 190 RNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp ETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred CCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 88774 2 22 2 3778899999999999888744
No 176
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.15 E-value=9.7e-10 Score=108.56 Aligned_cols=195 Identities=10% Similarity=-0.047 Sum_probs=118.4
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEe----------------ccCCCCceeE-
Q 012367 226 WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKF----------------GKKKSSHVPV- 288 (465)
Q Consensus 226 ~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~- 288 (465)
..+.|+|+|++||.++.++.|.+|++.++............... ...+.+ ..........
T Consensus 84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~---g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~ 160 (396)
T 3c5m_A 84 FGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGY---GTWVANSDCTKLVGIEILKRDWQPLTSWEKFAE 160 (396)
T ss_dssp TTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEE---EEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHH
T ss_pred ccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCC---CCEEEeccCCccccccccccccCCCCcceeeee
Confidence 34789999999999999999999999876544333222110000 000000 0000000000
Q ss_pred ----ecCCce--eeecCCcceeeeccccceEEEEecC-CC-EEEEEeCC------CeEEEEeCCCCeEeEEecC--CCce
Q 012367 289 ----VIPDEV--FQIEESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMD------KTVRMWQVGCNQCLNVFDH--HNYV 352 (465)
Q Consensus 289 ----~~~~~~--~~~~~~~~~~~~gh~~~V~~l~~s~-~~-~l~s~s~D------gtV~lWD~~~~~~l~~~~h--~~~V 352 (465)
.....+ +++.......+..+...+..+.|+| ++ .|+.++.+ ..|.+||+..+.......+ ...+
T Consensus 161 ~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 240 (396)
T 3c5m_A 161 FYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESC 240 (396)
T ss_dssp HHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEE
T ss_pred eccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccc
Confidence 000111 2222333344445677889999999 55 56655543 4688999876654333333 2258
Q ss_pred EEEEEccCCCCEEEEEeCC-----CcEEEEeCCCCeEEecccCCCCeEEEEEee-CCCEEEEEE----------------
Q 012367 353 TCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVVDWADVRDVISAICYIP-DGKGFIVGS---------------- 410 (465)
Q Consensus 353 ~~i~fsp~~~~~l~sgs~D-----g~I~iwd~~~~~~~~~~~~~~~V~sv~~sp-dg~~l~sgs---------------- 410 (465)
..++|+| ++++|+.++.+ +.|++||+.+++...+..... .. +.|+| ||+.+++++
T Consensus 241 ~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~ 317 (396)
T 3c5m_A 241 THEFWIP-DGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIE 317 (396)
T ss_dssp EEEEECT-TSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCC
T ss_pred cceEECC-CCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccC
Confidence 8899999 88877776554 449999999887655433322 33 89999 999888765
Q ss_pred cCCcEEEEEecCCcee
Q 012367 411 ITGTCHFYKASGNDLK 426 (465)
Q Consensus 411 ~dG~v~iwd~~~~~~~ 426 (465)
.++.|++||+.+++..
T Consensus 318 ~~~~i~~~d~~~~~~~ 333 (396)
T 3c5m_A 318 NDPFLYVLNTKAKSAQ 333 (396)
T ss_dssp CCCEEEEEETTTTBCC
T ss_pred CCCcEEEEecccCceE
Confidence 2478999999877653
No 177
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.15 E-value=1.1e-08 Score=99.44 Aligned_cols=201 Identities=10% Similarity=0.033 Sum_probs=128.9
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCC----cccccCCCeEEeccCCCCceeEe--cCCc
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG----FGSNAKEGKIKFGKKKSSHVPVV--IPDE 293 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 293 (465)
++-.....|+++|+|+++++...++.|++|+..........+..... .........+.+........... ....
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 45567899999999999999999999999998654211111111000 00000111122221111111111 1111
Q ss_pred ee--eecCCcceeee----------ccccceEEEEecCC-C-EEEEEeCCCeEEEEeCCCCeEeEEec---CCCceEEEE
Q 012367 294 VF--QIEESPLQELH----------GHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQ 356 (465)
Q Consensus 294 ~~--~~~~~~~~~~~----------gh~~~V~~l~~s~~-~-~l~s~s~DgtV~lWD~~~~~~l~~~~---h~~~V~~i~ 356 (465)
+. ......+..+. ++......|+++|+ + ++++...++.|++||..+++.+..+. +...+..++
T Consensus 168 I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~ 247 (329)
T 3fvz_A 168 IVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAIS 247 (329)
T ss_dssp EEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEE
T ss_pred EEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceee
Confidence 21 11223333332 23344889999987 5 56677788999999999899988883 556789999
Q ss_pred EccCCCCEEEEEe-------CCCcEEEEeCCCCeEEecc----cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367 357 FNPIDDNYFISGS-------IDGKVRIWGVCEKRVVDWA----DVRDVISAICYIPDGKGFIVGSITGTCHFYKASG 422 (465)
Q Consensus 357 fsp~~~~~l~sgs-------~Dg~I~iwd~~~~~~~~~~----~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~ 422 (465)
|+| +..+++.+ .+..|++||..+++++... .+...+..|+++|+|..+++...+++|++|++.+
T Consensus 248 ~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 248 YIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EET--TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred ecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 998 33333333 3458999999999887753 5667799999999998888888899999999875
No 178
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.14 E-value=2.1e-09 Score=115.81 Aligned_cols=157 Identities=12% Similarity=0.154 Sum_probs=114.5
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCC-----cEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGEDG-----VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~Dg-----~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (465)
+|...+..++|||||++||.++.++ .|++||+.++.....
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~----------------------------------- 166 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD----------------------------------- 166 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-----------------------------------
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-----------------------------------
Confidence 5666799999999999998776544 899999987643211
Q ss_pred eeecCCcceeeeccccceEEEEecCCC-EEEEEeCCCe----------------EEEEeCCCCeE--eEEec---CCCce
Q 012367 295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKT----------------VRMWQVGCNQC--LNVFD---HHNYV 352 (465)
Q Consensus 295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~Dgt----------------V~lWD~~~~~~--l~~~~---h~~~V 352 (465)
.+ ....+..++|+|++ .|+.++.++. |++|++.+++. ...+. |...+
T Consensus 167 ---------~~--~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~ 235 (710)
T 2xdw_A 167 ---------VL--ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWM 235 (710)
T ss_dssp ---------EE--EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCE
T ss_pred ---------cc--cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEE
Confidence 01 11225678999986 7887777766 99999988762 22332 45578
Q ss_pred EEEEEccCCCCEEEEEeC-----CCcEEEEeCCC------C--eEEecccCCCCeEEEEEeeCCCEEEEEEcC----CcE
Q 012367 353 TCVQFNPIDDNYFISGSI-----DGKVRIWGVCE------K--RVVDWADVRDVISAICYIPDGKGFIVGSIT----GTC 415 (465)
Q Consensus 353 ~~i~fsp~~~~~l~sgs~-----Dg~I~iwd~~~------~--~~~~~~~~~~~V~sv~~spdg~~l~sgs~d----G~v 415 (465)
..+.|+| ++++|+.++. +..|++||+.+ + ....+..+...+.. .|+|+|+.|+..+.. +.|
T Consensus 236 ~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l 313 (710)
T 2xdw_A 236 GGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRL 313 (710)
T ss_dssp EEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEE
T ss_pred EEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEE
Confidence 8999999 9999888765 56899999976 4 45556666666655 589999988877653 368
Q ss_pred EEEEecCCc
Q 012367 416 HFYKASGND 424 (465)
Q Consensus 416 ~iwd~~~~~ 424 (465)
.+||+.+..
T Consensus 314 ~~~d~~~~~ 322 (710)
T 2xdw_A 314 INIDFTDPE 322 (710)
T ss_dssp EEEETTSCC
T ss_pred EEEeCCCCC
Confidence 999988764
No 179
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.12 E-value=1.9e-08 Score=95.69 Aligned_cols=204 Identities=12% Similarity=0.043 Sum_probs=127.2
Q ss_pred hccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCC------cccccCCCeEEeccCCCCc------
Q 012367 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG------FGSNAKEGKIKFGKKKSSH------ 285 (465)
Q Consensus 218 l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~------ 285 (465)
+..+.+.+.+|+|+|+|+++++...++.|.+||..++............ .......+.+.+.......
T Consensus 64 ~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~ 143 (296)
T 3e5z_A 64 EMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEG 143 (296)
T ss_dssp EESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGS
T ss_pred EECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccc
Confidence 3456778999999999998888877899999999766543221110000 0011112222221000000
Q ss_pred ---eeEecCCceeeecC-CcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCC-CCeE---eEEe-cCCCceEEE
Q 012367 286 ---VPVVIPDEVFQIEE-SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG-CNQC---LNVF-DHHNYVTCV 355 (465)
Q Consensus 286 ---~~~~~~~~~~~~~~-~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~-~~~~---l~~~-~h~~~V~~i 355 (465)
........++.+.. ..+..+..+...+..++|+|++ .|++.+.++.|.+||+. ++.. ...+ .+...+.++
T Consensus 144 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i 223 (296)
T 3e5z_A 144 YGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGL 223 (296)
T ss_dssp SCCCCCSSSCEEEEECTTSCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSE
T ss_pred ccccccCCCcEEEEECCCCCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeE
Confidence 00000123444432 3344455666778899999986 55777788999999986 5544 3333 244567789
Q ss_pred EEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEE-eeCCCEEEEEEcCCcEEEEEecCCcee
Q 012367 356 QFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICY-IPDGKGFIVGSITGTCHFYKASGNDLK 426 (465)
Q Consensus 356 ~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~-spdg~~l~sgs~dG~v~iwd~~~~~~~ 426 (465)
++.+ +++++++. ++.|.+||.....+..+..+.. +++++| .|+++.|++++.+| +.-++..+.+++
T Consensus 224 ~~d~-~G~l~v~~--~~~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~~ 290 (296)
T 3e5z_A 224 RVDA-GGLIWASA--GDGVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGLE 290 (296)
T ss_dssp EEBT-TSCEEEEE--TTEEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBCC
T ss_pred EECC-CCCEEEEc--CCeEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccccccc
Confidence 9999 88877766 7899999987444444555555 999999 58999999988764 344555555543
No 180
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.10 E-value=1.4e-10 Score=114.61 Aligned_cols=182 Identities=9% Similarity=0.067 Sum_probs=120.7
Q ss_pred CCCcEEEEEECCCCCEEEEEeCC---CcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeee
Q 012367 221 HKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 297 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaSgs~D---g~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (465)
|...+..++|||+|++||.++.. ..|.+||+.++.....
T Consensus 34 ~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l-------------------------------------- 75 (396)
T 3c5m_A 34 HRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL-------------------------------------- 75 (396)
T ss_dssp ECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC--------------------------------------
T ss_pred cceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe--------------------------------------
Confidence 33447788999999998877553 3677778776432110
Q ss_pred cCCcceeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEE-------------------EE
Q 012367 298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTC-------------------VQ 356 (465)
Q Consensus 298 ~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~-------------------i~ 356 (465)
..++......+.|+|++ .|+.++.++.|++||+.+++....+. +...... +.
T Consensus 76 -------~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~ 148 (396)
T 3c5m_A 76 -------TEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRD 148 (396)
T ss_dssp -------CCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGG
T ss_pred -------ecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccc
Confidence 01111122236789986 78889999999999999888766654 3333323 34
Q ss_pred EccCCCCEEEEE-----eCCCcEEEEeCCCCeEEecccCCCCeEEEEEee-CCCEEEEEEcC------CcEEEEEecCCc
Q 012367 357 FNPIDDNYFISG-----SIDGKVRIWGVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSIT------GTCHFYKASGND 424 (465)
Q Consensus 357 fsp~~~~~l~sg-----s~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~sp-dg~~l~sgs~d------G~v~iwd~~~~~ 424 (465)
|+| ++++++.+ ..+..|.+||+.+++......+...+..+.|+| +|+.|+..+.+ ..|.+|++.+++
T Consensus 149 ~sp-dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~ 227 (396)
T 3c5m_A 149 WQP-LTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN 227 (396)
T ss_dssp CCC-CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC
T ss_pred cCC-CCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc
Confidence 567 66665543 356789999999988777667778899999999 88877776654 357888876654
Q ss_pred eeeeEeeecCcccccCCceeeEEEeecCCc
Q 012367 425 LKLEKVDFHDRKKTSGNKITGIQGRISKNY 454 (465)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~It~~~f~p~gs~ 454 (465)
... +..+. ....+..+.|+|+|.+
T Consensus 228 ~~~--l~~~~----~~~~~~~~~~spdg~~ 251 (396)
T 3c5m_A 228 VRK--IKEHA----EGESCTHEFWIPDGSA 251 (396)
T ss_dssp CEE--SSCCC----TTEEEEEEEECTTSSC
T ss_pred eeE--eeccC----CCccccceEECCCCCE
Confidence 321 11110 1234677888888765
No 181
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.06 E-value=1.9e-08 Score=95.43 Aligned_cols=208 Identities=11% Similarity=0.076 Sum_probs=135.8
Q ss_pred CCCEEEEEeCCCcEEEEecCCceeeeeeecCCC---CcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeeecc-
Q 012367 233 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG---GFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGH- 308 (465)
Q Consensus 233 dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh- 308 (465)
.+++|++++.|+.|.+||..+++.......... ........+.+.+. ....... ++...+.+..+..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~------~d~~G~~~W~~~~~~ 75 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKM------ITRDGRELWNIAAPA 75 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEE------ECTTSCEEEEEECCT
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEE------ECCCCCEEEEEcCCC
Confidence 457999999999999999989888877665431 11111222222221 1111111 12223444555543
Q ss_pred ccceEEEEecCCC-EEEEEeC-CCeEEEEeCCCCeEeEEecC-------CCceEEEEEccCCCCEEEEEeCCCcEEEEeC
Q 012367 309 KGDVLDLAWSNSN-YLLSCSM-DKTVRMWQVGCNQCLNVFDH-------HNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379 (465)
Q Consensus 309 ~~~V~~l~~s~~~-~l~s~s~-DgtV~lWD~~~~~~l~~~~h-------~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~ 379 (465)
...+.++.+.+++ .+++.+. ++.|..+|. +++.+..+.. ......+++.+ +++++++...++.|..||.
T Consensus 76 ~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~ 153 (276)
T 3no2_A 76 GCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAP 153 (276)
T ss_dssp TCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECT
T ss_pred CccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEEECC
Confidence 3467888888876 6666666 778888886 6887777641 12345667888 9999999999999999999
Q ss_pred CCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC
Q 012367 380 CEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK 452 (465)
Q Consensus 380 ~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g 452 (465)
. ++.+........+.++...++|+.+++++.+++|..+|..++++... +............+++++..++|
T Consensus 154 ~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~-~~~~~~~~~~l~~~~~~~~~~~G 224 (276)
T 3no2_A 154 N-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRR-VNANDIEGVQLFFVAQLFPLQNG 224 (276)
T ss_dssp T-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEE-EEGGGSBSCCCSEEEEEEECTTS
T ss_pred C-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEE-ecCCCCCCccccccccceEcCCC
Confidence 8 77766444445677888899999999999899999999997777443 21111000122446666666554
No 182
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.05 E-value=1.6e-09 Score=117.31 Aligned_cols=141 Identities=6% Similarity=0.115 Sum_probs=105.4
Q ss_pred ceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec-CCCc-----eEEEEEccCCCCEEEEEeCC---------CcEE
Q 012367 311 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNY-----VTCVQFNPIDDNYFISGSID---------GKVR 375 (465)
Q Consensus 311 ~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~-----V~~i~fsp~~~~~l~sgs~D---------g~I~ 375 (465)
...++.|+|++.++..+ |++|++||+.++++...+. |... ...++|+| |+++|+.++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECC-CCCEEEEEECCeeeEEEccceEEE
Confidence 45578999998555445 9999999999999887774 3322 24478999 99999998876 5667
Q ss_pred EEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCccc--cc-----------CCc
Q 012367 376 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK--TS-----------GNK 442 (465)
Q Consensus 376 iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~--~~-----------~~~ 442 (465)
+||+.++++..+..+...+..++|+|||+.|+.+ .++.|++|++.++... ++...+... .. ...
T Consensus 96 ~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~--~lt~~g~~~~~~~g~~~~v~~ee~~~~ 172 (740)
T 4a5s_A 96 IYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSY--RITWTGKEDIIYNGITDWVYEEEVFSA 172 (740)
T ss_dssp EEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCE--ECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred EEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceE--EEcCCCCccceecCcccccccchhcCC
Confidence 9999999988888888899999999999999888 5789999999887643 222222110 00 122
Q ss_pred eeeEEEeecCCccc
Q 012367 443 ITGIQGRISKNYDN 456 (465)
Q Consensus 443 It~~~f~p~gs~d~ 456 (465)
..++.|+|+|.+--
T Consensus 173 ~~~~~wSpDg~~la 186 (740)
T 4a5s_A 173 YSALWWSPNGTFLA 186 (740)
T ss_dssp SBCEEECTTSSEEE
T ss_pred CcceEECCCCCEEE
Confidence 34688999998643
No 183
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.04 E-value=8.4e-09 Score=110.80 Aligned_cols=193 Identities=12% Similarity=0.051 Sum_probs=118.6
Q ss_pred ccCCCcEEEEEECCCCCEEE-----EEeCCCcEEEEecCCceee-eeeecCCCCcccccCCCeEEeccCCCCceeEec--
Q 012367 219 QAHKGCIWTLKFSPDGRYLA-----SGGEDGVVRIWHVTSVAAS-CKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI-- 290 (465)
Q Consensus 219 ~~H~~~I~~l~fspdg~~La-----Sgs~Dg~V~iWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 290 (465)
.+|...+.+++|||||++|| +|+.+.+|++||+.++... ........ .....+...+........
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~-------~~~~~wspDg~~l~~~~~d~ 189 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGK-------YATPKWTPDSKGFYYEWLPT 189 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCT-------TCCCEECTTSSEEEEEECCC
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCccc-------ccceEEecCCCEEEEEEecC
Confidence 36777899999999999999 5566679999999987654 11111110 011111111111111111
Q ss_pred -----------CCceeee--cCC-----cceeeeccccceEEEEecCCC-EEEEEeCCC----eEEEEeCCCCeEeEEec
Q 012367 291 -----------PDEVFQI--EES-----PLQELHGHKGDVLDLAWSNSN-YLLSCSMDK----TVRMWQVGCNQCLNVFD 347 (465)
Q Consensus 291 -----------~~~~~~~--~~~-----~~~~~~gh~~~V~~l~~s~~~-~l~s~s~Dg----tV~lWD~~~~~~l~~~~ 347 (465)
+..++.. ... .+.....|...+..+.|+|++ +|+.++.++ .|.+||..++.......
T Consensus 190 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~ 269 (695)
T 2bkl_A 190 DPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVK 269 (695)
T ss_dssp CTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEE
T ss_pred CCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeec
Confidence 1112222 111 222333456688899999986 666666555 67888776666555555
Q ss_pred CCCceEEEEEccCCCCEEEEEe---CCCcEEEEeCCCCeE---EecccC--CCCeEEEEEeeCCCEEEEEEcCCcEEEEE
Q 012367 348 HHNYVTCVQFNPIDDNYFISGS---IDGKVRIWGVCEKRV---VDWADV--RDVISAICYIPDGKGFIVGSITGTCHFYK 419 (465)
Q Consensus 348 h~~~V~~i~fsp~~~~~l~sgs---~Dg~I~iwd~~~~~~---~~~~~~--~~~V~sv~~spdg~~l~sgs~dG~v~iwd 419 (465)
+...+....+ | ++.++++.. .++.|.+||+.++.. ..+..+ ...+..++|+ ++..+++...||..++|.
T Consensus 270 ~~~~~~~~~~-~-~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~ 346 (695)
T 2bkl_A 270 GVGAKYEVHA-W-KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRV 346 (695)
T ss_dssp CSSCCEEEEE-E-TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred CCCceEEEEe-c-CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEE
Confidence 6666666667 4 455555544 257899999977642 333333 4568888998 777888889999999887
Q ss_pred ec
Q 012367 420 AS 421 (465)
Q Consensus 420 ~~ 421 (465)
+.
T Consensus 347 ~~ 348 (695)
T 2bkl_A 347 AT 348 (695)
T ss_dssp EE
T ss_pred Ee
Confidence 76
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.03 E-value=2.4e-09 Score=103.65 Aligned_cols=174 Identities=11% Similarity=0.068 Sum_probs=121.3
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcc
Q 012367 223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 302 (465)
Q Consensus 223 ~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (465)
..|++++|++++..++..+.++.++.|.- ...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------~~~ 37 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITA------------------------------------------------EPW 37 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEEC------------------------------------------------EEE
T ss_pred cccceeeecCCccceeEEeecccCccccc------------------------------------------------cee
Confidence 44778888888877777777888888821 123
Q ss_pred eeeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCC----CcEEE
Q 012367 303 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID----GKVRI 376 (465)
Q Consensus 303 ~~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~D----g~I~i 376 (465)
..+.++...+.+++|++++ +++++..++.|.+||..+++..... .+...+.+++++| +++++++...+ +.|.+
T Consensus 38 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~ 116 (333)
T 2dg1_A 38 LEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFA 116 (333)
T ss_dssp EEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEE
T ss_pred EEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEE
Confidence 3444566677899999886 4557788899999999988776655 4667899999999 88888887766 68999
Q ss_pred EeCCCCeEEec---ccCCCCeEEEEEeeCCCEEEEEEc------CCcEEEEEecCCceeeeEeeecCcccccCCceeeEE
Q 012367 377 WGVCEKRVVDW---ADVRDVISAICYIPDGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 447 (465)
Q Consensus 377 wd~~~~~~~~~---~~~~~~V~sv~~spdg~~l~sgs~------dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~ 447 (465)
||..++..... ......+..++++|+|+.+++... .+.|..|+..+++..... . ....+.++.
T Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~------~~~~~~~i~ 188 (333)
T 2dg1_A 117 ATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII--Q------NISVANGIA 188 (333)
T ss_dssp ECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE--E------EESSEEEEE
T ss_pred EeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee--c------CCCcccceE
Confidence 99988765432 234467999999999987776653 245555555544432211 1 012356666
Q ss_pred EeecCC
Q 012367 448 GRISKN 453 (465)
Q Consensus 448 f~p~gs 453 (465)
|+|+|.
T Consensus 189 ~~~dg~ 194 (333)
T 2dg1_A 189 LSTDEK 194 (333)
T ss_dssp ECTTSS
T ss_pred ECCCCC
Confidence 777654
No 185
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.97 E-value=1.7e-08 Score=97.92 Aligned_cols=105 Identities=10% Similarity=0.123 Sum_probs=72.5
Q ss_pred ceEEEEecCCCEEEEEeCCC-------eEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCC--------CcEE
Q 012367 311 DVLDLAWSNSNYLLSCSMDK-------TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID--------GKVR 375 (465)
Q Consensus 311 ~V~~l~~s~~~~l~s~s~Dg-------tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~D--------g~I~ 375 (465)
.+..++|+|++++++++.+. ...||.+.+++......+ ..+..+ +| ++++|+.++.+ ..|.
T Consensus 172 ~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~ 247 (347)
T 2gop_A 172 RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLY 247 (347)
T ss_dssp TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEE
T ss_pred CcccccCCCCeEEEEEecccccccccccccEEEeCCCceEEeccC-cceeeE--CC-CCCEEEEEEccccCCccccceEE
Confidence 67788999988555665442 334443335655444445 555544 88 89888877754 3688
Q ss_pred EEeCCCCeEEec-ccCCCCeEE-EEEeeCCCEEEEEEcCCcEEEEEecCCc
Q 012367 376 IWGVCEKRVVDW-ADVRDVISA-ICYIPDGKGFIVGSITGTCHFYKASGND 424 (465)
Q Consensus 376 iwd~~~~~~~~~-~~~~~~V~s-v~~spdg~~l~sgs~dG~v~iwd~~~~~ 424 (465)
+|| +++...+ ..+...+.. +.|+ || .+++++.+|.+++| +.+++
T Consensus 248 ~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~ 293 (347)
T 2gop_A 248 IYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGE 293 (347)
T ss_dssp EEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSS
T ss_pred EEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCc
Confidence 888 6665554 345667886 9999 98 88999999999999 88443
No 186
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.97 E-value=3.2e-08 Score=96.13 Aligned_cols=214 Identities=6% Similarity=-0.045 Sum_probs=131.3
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccccc-CCCeEEeccCCCCceeEecCCceeeecCCc
Q 012367 223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNA-KEGKIKFGKKKSSHVPVVIPDEVFQIEESP 301 (465)
Q Consensus 223 ~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (465)
.....|.+. +++++++...++.|.+||..+++................ ..+.+.+.........++.... .+.
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t-----~~~ 117 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT-----YEI 117 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTT-----TEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCC-----CeE
Confidence 346778774 455566666789999999998877655432111111111 1122222221111111111111 111
Q ss_pred ceeeeccc-----cceEEEEecCCCEEEEEe--CCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCC---
Q 012367 302 LQELHGHK-----GDVLDLAWSNSNYLLSCS--MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID--- 371 (465)
Q Consensus 302 ~~~~~gh~-----~~V~~l~~s~~~~l~s~s--~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~D--- 371 (465)
...+.... .....+++ .++.|+.+. .+++|.+||+.+++.+..+........++++| ++++++++..+
T Consensus 118 ~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~-dG~l~v~~~~~~~~ 195 (328)
T 3dsm_A 118 TGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDK-YNKMWTITDGGYEG 195 (328)
T ss_dssp EEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECT-TSEEEEEBCCBCTT
T ss_pred EEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcC-CCCEEEEECCCccC
Confidence 22222111 14556777 455555554 48999999999999988887666678899999 88887777654
Q ss_pred -------CcEEEEeCCCCeEEecccC--CCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCc
Q 012367 372 -------GKVRIWGVCEKRVVDWADV--RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (465)
Q Consensus 372 -------g~I~iwd~~~~~~~~~~~~--~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 442 (465)
+.|.+||..++++...... ...+..++|+|+++.|+++.. .|.+||+.++++....+ ... ....
T Consensus 196 ~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~-~~~----~~~~ 268 (328)
T 3dsm_A 196 SPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPF-LEF----RDTK 268 (328)
T ss_dssp CSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCS-BCC----CSSC
T ss_pred CccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeee-ecC----CCCc
Confidence 7899999999887753332 347899999999999988755 89999998876531111 000 1356
Q ss_pred eeeEEEeec
Q 012367 443 ITGIQGRIS 451 (465)
Q Consensus 443 It~~~f~p~ 451 (465)
..++.+.|+
T Consensus 269 p~gi~vdp~ 277 (328)
T 3dsm_A 269 YYGLTVNPN 277 (328)
T ss_dssp EEEEEECTT
T ss_pred eEEEEEcCC
Confidence 677777774
No 187
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.97 E-value=1.5e-08 Score=98.49 Aligned_cols=144 Identities=13% Similarity=0.205 Sum_probs=97.0
Q ss_pred CcEEEEEECCCCCEEEEEeCC---Cc--EEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeee
Q 012367 223 GCIWTLKFSPDGRYLASGGED---GV--VRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 297 (465)
Q Consensus 223 ~~I~~l~fspdg~~LaSgs~D---g~--V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (465)
..+..++|||||++||.++.+ +. |.+|++.++...
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~---------------------------------------- 98 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSK---------------------------------------- 98 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEE----------------------------------------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceE----------------------------------------
Confidence 457889999999999988764 33 666676653221
Q ss_pred cCCcceeeeccccceEEEEecCCC-EEEEEeC---------------------------CCeEEEEeCCCCeEeEEecCC
Q 012367 298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSM---------------------------DKTVRMWQVGCNQCLNVFDHH 349 (465)
Q Consensus 298 ~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~---------------------------DgtV~lWD~~~~~~l~~~~h~ 349 (465)
.+..+.. +..++|+|++ .|+.++. ...|.+||+.+++.+..+...
T Consensus 99 ------~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~ 171 (347)
T 2gop_A 99 ------KILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP 171 (347)
T ss_dssp ------EEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE
T ss_pred ------EEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC
Confidence 1111223 8889999986 5666553 257999999988874444333
Q ss_pred CceEEEEEccCCCCEEEEEeCCC-------cEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcC--------Cc
Q 012367 350 NYVTCVQFNPIDDNYFISGSIDG-------KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT--------GT 414 (465)
Q Consensus 350 ~~V~~i~fsp~~~~~l~sgs~Dg-------~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~d--------G~ 414 (465)
.+..++|+| ++ +++++..+. ...||.+.+++...+..+ ..+..+ +|||+.|+.++.+ +.
T Consensus 172 -~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~ 245 (347)
T 2gop_A 172 -RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNK 245 (347)
T ss_dssp -TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCE
T ss_pred -CcccccCCC-Ce-EEEEEecccccccccccccEEEeCCCceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccce
Confidence 888999999 88 888776542 334444336666555544 445544 9999998887754 35
Q ss_pred EEEEE
Q 012367 415 CHFYK 419 (465)
Q Consensus 415 v~iwd 419 (465)
|.+||
T Consensus 246 l~~~d 250 (347)
T 2gop_A 246 LYIYD 250 (347)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 77777
No 188
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.96 E-value=1.5e-07 Score=87.79 Aligned_cols=215 Identities=12% Similarity=0.019 Sum_probs=130.0
Q ss_pred cEEEEEECCCCCEEE-EEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeee--cCC
Q 012367 224 CIWTLKFSPDGRYLA-SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI--EES 300 (465)
Q Consensus 224 ~I~~l~fspdg~~La-Sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 300 (465)
...+|+++++|++++ +.+.++.|.+|+..+............ ....+.+...+. .........++.+ ...
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~------~p~~i~~~~~g~-l~v~~~~~~i~~~d~~~~ 97 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLY------QPQGLAVDGAGT-VYVTDFNNRVVTLAAGSN 97 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCC------SCCCEEECTTCC-EEEEETTTEEEEECTTCS
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcC------CcceeEECCCCC-EEEEcCCCEEEEEeCCCc
Confidence 678999999999777 557889999999765432211111100 111111111111 1111111222222 222
Q ss_pred cceeee-ccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcEEEE
Q 012367 301 PLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377 (465)
Q Consensus 301 ~~~~~~-gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iw 377 (465)
....+. .....+.++++.+++ ++++...++.|.+|+..+....... .....+.+++++| +++++++...++.|.+|
T Consensus 98 ~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~ 176 (270)
T 1rwi_B 98 NQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKL 176 (270)
T ss_dssp CCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECT-TCCEEEEEGGGTEEEEE
T ss_pred eEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeC-CCCEEEEECCCCEEEEE
Confidence 222222 223578899999876 5555566789999987655433222 2334678999999 88888887778899999
Q ss_pred eCCCCeEEec-ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCC
Q 012367 378 GVCEKRVVDW-ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKN 453 (465)
Q Consensus 378 d~~~~~~~~~-~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs 453 (465)
|..+...... ......+..++++|+|..+++...++.|.+|+..+..... ... .....+.++.+.++|.
T Consensus 177 ~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~--~~~-----~~~~~p~~i~~~~~g~ 246 (270)
T 1rwi_B 177 EAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV--LPF-----TGLNTPLAVAVDSDRT 246 (270)
T ss_dssp CTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE--CCC-----CSCSCEEEEEECTTCC
T ss_pred ecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee--ecc-----CCCCCceeEEECCCCC
Confidence 9987765543 2333678999999999777776678899999987654322 111 1235678888888763
No 189
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.94 E-value=7.9e-07 Score=83.75 Aligned_cols=216 Identities=6% Similarity=0.082 Sum_probs=134.8
Q ss_pred hccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCC-Ccc--cccCCCeEEeccCCCCceeEecCCce
Q 012367 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG-GFG--SNAKEGKIKFGKKKSSHVPVVIPDEV 294 (465)
Q Consensus 218 l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (465)
+..+...+.+|+++++|+++++...++.|.+||.. +........... ... .....+.+.+..... ..+
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~--------~~i 80 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAA--------NKI 80 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTT--------TEE
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCC--------CeE
Confidence 34566789999999999988877778999999987 433222111110 000 001112222221111 122
Q ss_pred eeecC-Ccceeee--ccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe--cCCCceEEEEEccCCCCEEEEE
Q 012367 295 FQIEE-SPLQELH--GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISG 368 (465)
Q Consensus 295 ~~~~~-~~~~~~~--gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~--~h~~~V~~i~fsp~~~~~l~sg 368 (465)
+.+.. .....+. .+...+.++++.+++ ++++...++.|.+||. ++...... .+...+..+++.| +++++++.
T Consensus 81 ~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~ 158 (299)
T 2z2n_A 81 GRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTE 158 (299)
T ss_dssp EEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEE
T ss_pred EEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEe
Confidence 22211 1122222 244578899999876 4555556789999999 55544332 2445789999999 88888887
Q ss_pred eCCCcEEEEeCCCCeEEec--ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeE
Q 012367 369 SIDGKVRIWGVCEKRVVDW--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 446 (465)
Q Consensus 369 s~Dg~I~iwd~~~~~~~~~--~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~ 446 (465)
..++.|.+||. ++++... ......+.+++++++|+..++...++.|.+||. ++.... +... .....+.++
T Consensus 159 ~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~~~----~~~~~~~~i 230 (299)
T 2z2n_A 159 NQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE--FKIP----TPNARPHAI 230 (299)
T ss_dssp TTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE--EECS----STTCCEEEE
T ss_pred CCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE--EECC----CCCCCceeE
Confidence 77789999999 6665543 334566889999999987666666889999998 555432 2221 123567778
Q ss_pred EEeecC
Q 012367 447 QGRISK 452 (465)
Q Consensus 447 ~f~p~g 452 (465)
.+.++|
T Consensus 231 ~~~~~g 236 (299)
T 2z2n_A 231 TAGAGI 236 (299)
T ss_dssp EECSTT
T ss_pred EECCCC
Confidence 777765
No 190
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.92 E-value=5.2e-08 Score=90.96 Aligned_cols=193 Identities=9% Similarity=-0.032 Sum_probs=121.7
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCc--ccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGF--GSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (465)
Q Consensus 222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (465)
...+.+|+++++|+++++.. ++.|.+||..+.............. ......+.+.+.... ...++.+..
T Consensus 66 ~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~--------~~~i~~~~~ 136 (270)
T 1rwi_B 66 LYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRG--------NNRVVKLAA 136 (270)
T ss_dssp CCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGG--------GTEEEEECT
T ss_pred cCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECC--------CCEEEEEEC
Confidence 34577899999999666666 8899999987643321111100000 000111122221111 112222211
Q ss_pred C-cce--eeeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCcE
Q 012367 300 S-PLQ--ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKV 374 (465)
Q Consensus 300 ~-~~~--~~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~I 374 (465)
. ... ....+...+.++++++++ ++++...++.|.+||.......... .+...+.++++.| +++++++...++.|
T Consensus 137 ~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~-~g~l~v~~~~~~~v 215 (270)
T 1rwi_B 137 GSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQV 215 (270)
T ss_dssp TCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT-TCCEEEEETTTSCE
T ss_pred CCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECC-CCCEEEEECCCCcE
Confidence 1 111 111233467889999876 5555566789999999876654332 2336789999999 88888888788999
Q ss_pred EEEeCCCCeEEecc-cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCc
Q 012367 375 RIWGVCEKRVVDWA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 424 (465)
Q Consensus 375 ~iwd~~~~~~~~~~-~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~ 424 (465)
.+||..+....... .+...+.+++++|+|+.+++...+++|++|++...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 216 VKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred EEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 99999776544432 233678999999999988888889999999987654
No 191
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.91 E-value=1.3e-07 Score=91.86 Aligned_cols=194 Identities=11% Similarity=0.023 Sum_probs=121.6
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCC------CCcccccCCCeEEeccCC-CCceeEecCCce
Q 012367 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDD------GGFGSNAKEGKIKFGKKK-SSHVPVVIPDEV 294 (465)
Q Consensus 222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 294 (465)
......|+++++++.+++...++.|.+||..+........... .........+.+.+.... .....+....
T Consensus 83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~-- 160 (328)
T 3dsm_A 83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTE-- 160 (328)
T ss_dssp CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETT--
T ss_pred CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECC--
Confidence 4568899999999655555489999999999877665443322 111111112222222110 1111111111
Q ss_pred eeecCCcceeeeccccceEEEEecCCCEEEEEeC-C----------CeEEEEeCCCCeEeEEecC--CCceEEEEEccCC
Q 012367 295 FQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSM-D----------KTVRMWQVGCNQCLNVFDH--HNYVTCVQFNPID 361 (465)
Q Consensus 295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~-D----------gtV~lWD~~~~~~l~~~~h--~~~V~~i~fsp~~ 361 (465)
..+.+..+.. ......++++|++.++.++. + +.|.++|..+++....+.. ...+..++|+| +
T Consensus 161 ---t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~-d 235 (328)
T 3dsm_A 161 ---TDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNG-T 235 (328)
T ss_dssp ---TTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECT-T
T ss_pred ---CCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEec-C
Confidence 1122223322 23346788888875554443 3 6899999999998877753 34789999999 8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEe--ccc-CCCCeEEEEEeeC-CCEEEEE----EcCCcEEEEEecCCce
Q 012367 362 DNYFISGSIDGKVRIWGVCEKRVVD--WAD-VRDVISAICYIPD-GKGFIVG----SITGTCHFYKASGNDL 425 (465)
Q Consensus 362 ~~~l~sgs~Dg~I~iwd~~~~~~~~--~~~-~~~~V~sv~~spd-g~~l~sg----s~dG~v~iwd~~~~~~ 425 (465)
+++++++.. .|.+||..++++.. +.. .......++++|+ +..+++. ..+|.|.+||.. +++
T Consensus 236 ~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~ 304 (328)
T 3dsm_A 236 RDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKL 304 (328)
T ss_dssp SCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCE
T ss_pred CCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCE
Confidence 888877654 89999998887643 222 2467899999995 5555555 568999999998 444
No 192
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.91 E-value=1.3e-07 Score=102.18 Aligned_cols=223 Identities=12% Similarity=0.040 Sum_probs=125.2
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCC-----CcEEEEecCCceeeeeeecCC--CCcccccCCCeEEeccCCCCc-----ee
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGED-----GVVRIWHVTSVAASCKSFTDD--GGFGSNAKEGKIKFGKKKSSH-----VP 287 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~D-----g~V~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~ 287 (465)
+|...+..++|||||++||.++.+ ..|++||+.++.......... ........ ..+.+....... ..
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 455578999999999999887654 469999999876643321111 11111112 223322211110 00
Q ss_pred EecCCceeee--cCCc---ceeee--ccccceEEEEecCCC-EEEEEeCC-----CeEEEEeCCCC--e-EeEEecCCCc
Q 012367 288 VVIPDEVFQI--EESP---LQELH--GHKGDVLDLAWSNSN-YLLSCSMD-----KTVRMWQVGCN--Q-CLNVFDHHNY 351 (465)
Q Consensus 288 ~~~~~~~~~~--~~~~---~~~~~--gh~~~V~~l~~s~~~-~l~s~s~D-----gtV~lWD~~~~--~-~l~~~~h~~~ 351 (465)
...+..++.. .... ...+. .|...+..+.|+|++ +|+..+.+ ..|.+||+.++ . ......+...
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 318 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA 318 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence 0001112222 1111 11222 233458899999987 66665544 38999999877 4 3333345555
Q ss_pred eEEEEEccCCCCEEEEEeCC----CcEEEEeCCCC--eEEecc-cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC-C
Q 012367 352 VTCVQFNPIDDNYFISGSID----GKVRIWGVCEK--RVVDWA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASG-N 423 (465)
Q Consensus 352 V~~i~fsp~~~~~l~sgs~D----g~I~iwd~~~~--~~~~~~-~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~-~ 423 (465)
+....+ | +++.|+..+.+ +.|.+||+.++ ....+. .+...+..++|. ++..+++...+|..+||.+.. +
T Consensus 319 ~~~~~~-~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g 395 (741)
T 1yr2_A 319 QWDFVD-G-VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDG 395 (741)
T ss_dssp CEEEEE-E-ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTS
T ss_pred eEEEEe-c-cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC
Confidence 555544 7 78877777653 45999999874 444433 344456778887 666788888899888887652 2
Q ss_pred ceeeeEeeecCcccccCCceeeEEEeecC
Q 012367 424 DLKLEKVDFHDRKKTSGNKITGIQGRISK 452 (465)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~It~~~f~p~g 452 (465)
+ ....+.+.+ ...+.++.++|++
T Consensus 396 ~-~~~~l~~~~-----~~~v~~~~~s~d~ 418 (741)
T 1yr2_A 396 K-PAGAVSLPG-----IGSASGLSGRPGD 418 (741)
T ss_dssp C-EEEECBCSS-----SCEEEEEECCBTC
T ss_pred C-ceeeccCCC-----CeEEEEeecCCCC
Confidence 2 222333221 2456677777755
No 193
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.83 E-value=6.3e-07 Score=89.89 Aligned_cols=222 Identities=13% Similarity=0.050 Sum_probs=133.6
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCe-EEeccCCCC-ceeEecCCceeeecCC
Q 012367 223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK-IKFGKKKSS-HVPVVIPDEVFQIEES 300 (465)
Q Consensus 223 ~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~ 300 (465)
...+.|+|+++|+++++...++.|++||..+....................+. +........ ......... ..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~ia~~~~g~~l~~~d~~~~~~I~~~d~~~-----~~ 205 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWEGTHTVYVYMKAS-----GW 205 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCBCEECTTSSEEEEEBSSTTCEEEEEEGGG-----TT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCceeEecCCCcEEEEecCCCceEEEEEcCC-----Cc
Confidence 35789999999998888888899999999876654433321111111111111 111111111 111111110 01
Q ss_pred cceee---ec-cccceEEEEecC-CCEEEEEeCCCeEEEEeCCCCeEeEE----e-cCCCce-E-EEEEccCCCCEEEEE
Q 012367 301 PLQEL---HG-HKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNV----F-DHHNYV-T-CVQFNPIDDNYFISG 368 (465)
Q Consensus 301 ~~~~~---~g-h~~~V~~l~~s~-~~~l~s~s~DgtV~lWD~~~~~~l~~----~-~h~~~V-~-~i~fsp~~~~~l~sg 368 (465)
....+ .. +...+.+++++| ++.|+.+..++.|+.||..++..... . .+...- . .++|+|.++.++++-
T Consensus 206 ~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d 285 (409)
T 3hrp_A 206 APTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD 285 (409)
T ss_dssp CEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred eeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEe
Confidence 11122 12 445678899999 67777788889999999987764332 1 122222 3 999999556777777
Q ss_pred eCCCcEEEEeCCCCeEEecccC---------------CCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecCCceeeeEeee
Q 012367 369 SIDGKVRIWGVCEKRVVDWADV---------------RDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDF 432 (465)
Q Consensus 369 s~Dg~I~iwd~~~~~~~~~~~~---------------~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~~~~~~~~~~~ 432 (465)
...+.|+.|+.... ...+.++ -.....++++|+|+++++-+ .+++|+.|++.++.+.. +..
T Consensus 286 ~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~--~~g 362 (409)
T 3hrp_A 286 QNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVST--VAG 362 (409)
T ss_dssp TTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEE--EEE
T ss_pred CCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEE--EeC
Confidence 77889999997654 3333332 24588999999999777777 78999999977665432 222
Q ss_pred cCcc---------cccCCceeeEEEeecC
Q 012367 433 HDRK---------KTSGNKITGIQGRISK 452 (465)
Q Consensus 433 ~~~~---------~~~~~~It~~~f~p~g 452 (465)
+... ........++.+.++|
T Consensus 363 ~~~~~g~~~g~~~~~~~~~P~giavd~~g 391 (409)
T 3hrp_A 363 QVDVASQIDGTPLEATFNYPYDICYDGEG 391 (409)
T ss_dssp CTTCBSCCCBSTTTCCBSSEEEEEECSSS
T ss_pred CCCCCCcCCCChhceEeCCceEEEEcCCC
Confidence 1000 0113567888888875
No 194
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.83 E-value=1.9e-07 Score=91.98 Aligned_cols=87 Identities=7% Similarity=0.176 Sum_probs=72.2
Q ss_pred EEecCC-CEEEEEeC-----------CCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCC
Q 012367 315 LAWSNS-NYLLSCSM-----------DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 382 (465)
Q Consensus 315 l~~s~~-~~l~s~s~-----------DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~ 382 (465)
++++|+ +.++.+.. ..+|.+||+.+++.+..+.... +.+++|+| +++++++++. +.|.+||..++
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEET-TTTEEEEECS-SCEEEEECSSS
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECC-CCCEEEEeCC-CeEEEEECCCC
Confidence 678887 44444322 3589999999999999997555 99999999 9999998886 99999999999
Q ss_pred --eEEec-ccCCCCeEEEEEeeCCC
Q 012367 383 --RVVDW-ADVRDVISAICYIPDGK 404 (465)
Q Consensus 383 --~~~~~-~~~~~~V~sv~~spdg~ 404 (465)
+++.. ..+......++++|+|+
T Consensus 336 ~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 336 EPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SCEEEEEETTSCSSEEEEEECCCSC
T ss_pred cceeeEEeccCCCCcEEEEecCCCC
Confidence 88876 57788899999999986
No 195
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.83 E-value=1.3e-07 Score=101.80 Aligned_cols=178 Identities=7% Similarity=-0.017 Sum_probs=114.6
Q ss_pred EEEEEECCCCCEEEEEeCCCc----------------EEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeE
Q 012367 225 IWTLKFSPDGRYLASGGEDGV----------------VRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV 288 (465)
Q Consensus 225 I~~l~fspdg~~LaSgs~Dg~----------------V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (465)
+..++|+|||+.|+.++.|+. |.+|++.+.....
T Consensus 173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~------------------------------ 222 (710)
T 2xdw_A 173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED------------------------------ 222 (710)
T ss_dssp SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC------------------------------
T ss_pred cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccc------------------------------
Confidence 678999999999999988876 8888876532110
Q ss_pred ecCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeC-----CCeEEEEeCCC------Ce-EeEEe-cCCCceEE
Q 012367 289 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM-----DKTVRMWQVGC------NQ-CLNVF-DHHNYVTC 354 (465)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~-----DgtV~lWD~~~------~~-~l~~~-~h~~~V~~ 354 (465)
..+.....|...+..+.|+|++ +|+.++. +..|.+||+.+ +. ....+ .+...+..
T Consensus 223 -----------~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (710)
T 2xdw_A 223 -----------ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD 291 (710)
T ss_dssp -----------EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE
T ss_pred -----------eEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE
Confidence 0111112355567889999986 5665543 56899999976 42 23344 45555554
Q ss_pred EEEccCCCCEEEEEeCC----CcEEEEeCCCCe---EEecccCCC--CeEEEEEeeCCCEEEEEEcCCcE--EEEEecCC
Q 012367 355 VQFNPIDDNYFISGSID----GKVRIWGVCEKR---VVDWADVRD--VISAICYIPDGKGFIVGSITGTC--HFYKASGN 423 (465)
Q Consensus 355 i~fsp~~~~~l~sgs~D----g~I~iwd~~~~~---~~~~~~~~~--~V~sv~~spdg~~l~sgs~dG~v--~iwd~~~~ 423 (465)
.|+| +++.|+..+.. ..|.+||+.++. ...+..+.. .+..++|++++.++++...+|.. .+|++.++
T Consensus 292 -~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g 369 (710)
T 2xdw_A 292 -YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG 369 (710)
T ss_dssp -EEEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC
T ss_pred -EEec-cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCC
Confidence 4788 77776665543 369999998763 234444443 68889999888888888889865 45565444
Q ss_pred ceeeeEeeecCcccccCCceeeEEEeecC
Q 012367 424 DLKLEKVDFHDRKKTSGNKITGIQGRISK 452 (465)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~It~~~f~p~g 452 (465)
+. ...+.++ ...+.++.++|++
T Consensus 370 ~~-~~~l~~~------~~~v~~~~~s~d~ 391 (710)
T 2xdw_A 370 AL-LKIFPLE------VGSVVGYSGQKKD 391 (710)
T ss_dssp CE-EEEECCC------SSEEEEEECCTTC
T ss_pred CE-EEecCCC------CceEEEEecCCCC
Confidence 42 2233322 2456666666654
No 196
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.82 E-value=3.4e-07 Score=86.71 Aligned_cols=192 Identities=10% Similarity=0.032 Sum_probs=123.5
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCC-c--ccccCCCeEEeccCC-CCceeEecCCceeeec
Q 012367 223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG-F--GSNAKEGKIKFGKKK-SSHVPVVIPDEVFQIE 298 (465)
Q Consensus 223 ~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 298 (465)
..+.++.++|+|++|+ +.++.|..||. +++........... . ......+.+.+.... ......+.+ .
T Consensus 37 ~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~------~ 107 (276)
T 3no2_A 37 WECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM------K 107 (276)
T ss_dssp CCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT------T
T ss_pred CCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC------C
Confidence 4688999999999888 45778999998 66666555442111 0 011122222222211 111222211 1
Q ss_pred CCcceeee------ccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCC
Q 012367 299 ESPLQELH------GHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID 371 (465)
Q Consensus 299 ~~~~~~~~------gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~D 371 (465)
.+.+..+. ++......+++.++ +++++.+.++.|..||.. |+.+..+.....+.++.+.+ +++++++++.+
T Consensus 108 Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~-~g~~~v~~~~~ 185 (276)
T 3no2_A 108 GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLD-NGDCLVACGDA 185 (276)
T ss_dssp SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECT-TSCEEEECBTT
T ss_pred CCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcC-CCCEEEEeCCC
Confidence 22222221 22234445566666 488888899999999998 99999998666777888888 99999999888
Q ss_pred CcEEEEeCCCCeEEeccc-C------CCCeEEEEEeeCCCEEEEEEcC--------CcEEEEEec-CCce
Q 012367 372 GKVRIWGVCEKRVVDWAD-V------RDVISAICYIPDGKGFIVGSIT--------GTCHFYKAS-GNDL 425 (465)
Q Consensus 372 g~I~iwd~~~~~~~~~~~-~------~~~V~sv~~spdg~~l~sgs~d--------G~v~iwd~~-~~~~ 425 (465)
+.|..+|..+++++.... . -..+..++..++|..+++.... +..+++.+. ++++
T Consensus 186 ~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~ 255 (276)
T 3no2_A 186 HCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKV 255 (276)
T ss_dssp SEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBE
T ss_pred CeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCE
Confidence 899999999888765322 1 1237889999999888776421 244678774 4433
No 197
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.80 E-value=5.2e-07 Score=94.23 Aligned_cols=158 Identities=11% Similarity=0.102 Sum_probs=116.6
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEecC--CceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367 223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVT--SVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (465)
Q Consensus 223 ~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (465)
..+..+.|+|||++|++++.|+.|.+||+. +...
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~-------------------------------------------- 232 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT-------------------------------------------- 232 (567)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE--------------------------------------------
T ss_pred CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE--------------------------------------------
Confidence 356799999999999999999999999985 4322
Q ss_pred cceeeeccccceEEEEec----CCC-EEE-EEeCCCeEEEEeCCCCeEeEEecC-----------CC-ceEEEEEccCCC
Q 012367 301 PLQELHGHKGDVLDLAWS----NSN-YLL-SCSMDKTVRMWQVGCNQCLNVFDH-----------HN-YVTCVQFNPIDD 362 (465)
Q Consensus 301 ~~~~~~gh~~~V~~l~~s----~~~-~l~-s~s~DgtV~lWD~~~~~~l~~~~h-----------~~-~V~~i~fsp~~~ 362 (465)
+..+... .....++++ |++ +++ +...+++|.++|..+.+.+..+.. .. .+..+.+++...
T Consensus 233 -v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~ 310 (567)
T 1qks_A 233 -VAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP 310 (567)
T ss_dssp -EEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS
T ss_pred -eEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCC
Confidence 1222221 235688999 576 444 555679999999999998887641 12 678888888445
Q ss_pred CEEEEEeCCCcEEEEeCCCCeE--EecccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecCCcee
Q 012367 363 NYFISGSIDGKVRIWGVCEKRV--VDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLK 426 (465)
Q Consensus 363 ~~l~sgs~Dg~I~iwd~~~~~~--~~~~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~~~~~ 426 (465)
.++++...+|.|.++|..+... +...........+.|+|+|++++++. .++.|.++|+.++++.
T Consensus 311 ~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~ 377 (567)
T 1qks_A 311 EFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV 377 (567)
T ss_dssp EEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred EEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEE
Confidence 5666666779999999976532 22334455677899999999988776 4789999999988753
No 198
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.80 E-value=5.6e-07 Score=85.74 Aligned_cols=161 Identities=12% Similarity=0.109 Sum_probs=112.6
Q ss_pred CCCcEEEEEECCCCCEEEE-------EeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCc
Q 012367 221 HKGCIWTLKFSPDGRYLAS-------GGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaS-------gs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (465)
.-....+++|+++|+++++ +..++.|.+|+..++.......
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-------------------------------- 63 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-------------------------------- 63 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC--------------------------------
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe--------------------------------
Confidence 3345679999999998888 6778999999976643211000
Q ss_pred eeeecCCcceeeeccccceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEE-ec-----CCCceEEEEEccCCCCEEE
Q 012367 294 VFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNV-FD-----HHNYVTCVQFNPIDDNYFI 366 (465)
Q Consensus 294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~-~~-----h~~~V~~i~fsp~~~~~l~ 366 (465)
....++...+.+++++++ +.|+.++....|.+||.. ++.... .. ....+.++++.| ++++++
T Consensus 64 ---------~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v 132 (314)
T 1pjx_A 64 ---------PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWI 132 (314)
T ss_dssp ---------CEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEE
T ss_pred ---------cccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEE
Confidence 001124456889999998 876666666689999998 765444 32 123588999999 888888
Q ss_pred EEeCC---------------CcEEEEeCCCCeEEecccCCCCeEEEEEe----eCCCEEEEE-EcCCcEEEEEec-CCce
Q 012367 367 SGSID---------------GKVRIWGVCEKRVVDWADVRDVISAICYI----PDGKGFIVG-SITGTCHFYKAS-GNDL 425 (465)
Q Consensus 367 sgs~D---------------g~I~iwd~~~~~~~~~~~~~~~V~sv~~s----pdg~~l~sg-s~dG~v~iwd~~-~~~~ 425 (465)
+...+ +.|..||.. ++......+......++|+ |+|+.|+++ ..++.|.+|++. ++++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~ 211 (314)
T 1pjx_A 133 TAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI 211 (314)
T ss_dssp EECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE
T ss_pred EecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcc
Confidence 87655 567888876 5555444444567899999 999766655 467899999987 4443
No 199
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.80 E-value=9.1e-07 Score=84.26 Aligned_cols=198 Identities=9% Similarity=0.034 Sum_probs=118.4
Q ss_pred cCCCcEEEEEECCC-CCEEEEEeCCCcEEEEecCCceeeee-eecCCCCcccccCCCeEEeccCCCCceeEecC------
Q 012367 220 AHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCK-SFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP------ 291 (465)
Q Consensus 220 ~H~~~I~~l~fspd-g~~LaSgs~Dg~V~iWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 291 (465)
++...+.+++++++ |+++++.. .+.|.+||.. +..... ...... ........+.+...+. .......
T Consensus 68 ~~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~--~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~ 142 (314)
T 1pjx_A 68 GYGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEG--RRMQGCNDCAFDYEGN-LWITAPAGEVAPA 142 (314)
T ss_dssp TEECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTS--CBCBCCCEEEECTTSC-EEEEECBCBCTTS
T ss_pred CCCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCC--ccccCCcCEEECCCCC-EEEEecCcccccc
Confidence 35567999999999 76555544 4468899987 543322 111000 0001111222211111 1111100
Q ss_pred ----------CceeeecC-CcceeeeccccceEEEEec----CCC-EE-EEEeCCCeEEEEeCC-CCeE-----eEEec-
Q 012367 292 ----------DEVFQIEE-SPLQELHGHKGDVLDLAWS----NSN-YL-LSCSMDKTVRMWQVG-CNQC-----LNVFD- 347 (465)
Q Consensus 292 ----------~~~~~~~~-~~~~~~~gh~~~V~~l~~s----~~~-~l-~s~s~DgtV~lWD~~-~~~~-----l~~~~- 347 (465)
..++.+.. .....+..+......++|+ +++ .| ++...++.|.+||+. ++.. ...+.
T Consensus 143 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~ 222 (314)
T 1pjx_A 143 DYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 222 (314)
T ss_dssp CCCBTTSSSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCC
T ss_pred cccccccCCCCeEEEECCCCCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCC
Confidence 12333321 1222233344556789999 886 44 455678999999986 4442 22222
Q ss_pred CC-CceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecCC
Q 012367 348 HH-NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGN 423 (465)
Q Consensus 348 h~-~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~~ 423 (465)
+. ..+..+++++ +++++++...++.|.+||..+++... +..+...+.+++|+|+|+.|++++ .++.|..|++...
T Consensus 223 ~~~~~p~~i~~d~-~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 223 THEGGADGMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp CSSCEEEEEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred CCCCCCCceEECC-CCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 22 5688999999 89999988888999999998665443 334457899999999999665555 5688999988754
No 200
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.79 E-value=6.5e-06 Score=77.35 Aligned_cols=212 Identities=10% Similarity=0.058 Sum_probs=129.8
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec-CCCCcc--cccCCCeEEeccCCCCceeEecCCceeee
Q 012367 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFT-DDGGFG--SNAKEGKIKFGKKKSSHVPVVIPDEVFQI 297 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (465)
+...+.+|+++++|.++++...++.|..|+... ........ ...... .....+.+.+..... ..++.+
T Consensus 55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~--------~~i~~~ 125 (299)
T 2z2n_A 55 PDAKVMCLTISSDGEVWFTENAANKIGRITKKG-IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNG--------NRIGRI 125 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEECSSTTCCEEEEEECTTSCEEEEETTT--------TEEEEE
T ss_pred ccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-cEEEEeCCCcCCCceeeEECCCCCEEEEecCC--------ceEEEE
Confidence 446799999999999888877788999999763 22111110 000000 001112222221111 122222
Q ss_pred cC-Cccee--eeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEE-e-cCCCceEEEEEccCCCCEEEEEeCC
Q 012367 298 EE-SPLQE--LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV-F-DHHNYVTCVQFNPIDDNYFISGSID 371 (465)
Q Consensus 298 ~~-~~~~~--~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~-~-~h~~~V~~i~fsp~~~~~l~sgs~D 371 (465)
.. ..... ...+...+.++++.+++ ++++...++.|..||. +++.... . .....+.++++.+ +++++++...+
T Consensus 126 d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~ 203 (299)
T 2z2n_A 126 TDDGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGN-DDALWFVEIIG 203 (299)
T ss_dssp CTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSSEEEEETTT
T ss_pred CCCCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECC-CCCEEEEccCC
Confidence 11 11111 12244568899999876 4445556789999999 6665443 2 2445788999999 88888877778
Q ss_pred CcEEEEeCCCCeEEec--ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEe
Q 012367 372 GKVRIWGVCEKRVVDW--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGR 449 (465)
Q Consensus 372 g~I~iwd~~~~~~~~~--~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~ 449 (465)
+.|.+||. ++....+ ......+.+++++++|+..++...++.|..||.. +.+ ..+.... ....+.++.+
T Consensus 204 ~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~--~~~~~~~----~~~~~~~i~~- 274 (299)
T 2z2n_A 204 NKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NII--EEYPIQI----KSAEPHGICF- 274 (299)
T ss_dssp TEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TEE--EEEECSS----SSCCEEEEEE-
T ss_pred ceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-Cce--EEEeCCC----CCCccceEEe-
Confidence 89999999 6665442 2345679999999999866665578899999984 432 2332221 2356778877
Q ss_pred ecC
Q 012367 450 ISK 452 (465)
Q Consensus 450 p~g 452 (465)
++|
T Consensus 275 ~~g 277 (299)
T 2z2n_A 275 DGE 277 (299)
T ss_dssp CSS
T ss_pred cCC
Confidence 554
No 201
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.74 E-value=7.4e-07 Score=85.28 Aligned_cols=158 Identities=11% Similarity=0.032 Sum_probs=112.0
Q ss_pred hhccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367 217 EIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (465)
Q Consensus 217 ~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (465)
.+..+........|+|+|+ +++++..++.|..|+... .
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-~---------------------------------------- 77 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-T---------------------------------------- 77 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-C----------------------------------------
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-C----------------------------------------
Confidence 3444556678899999998 677777889999998742 1
Q ss_pred eecCCcceeeeccccceEEEEecCCCEEEEEe-CCCeEEEEeCCCCeEeEEec-----CCCceEEEEEccCCCCEEEE--
Q 012367 296 QIEESPLQELHGHKGDVLDLAWSNSNYLLSCS-MDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFIS-- 367 (465)
Q Consensus 296 ~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s-~DgtV~lWD~~~~~~l~~~~-----h~~~V~~i~fsp~~~~~l~s-- 367 (465)
...+..+...+..+++++++.|+.+. .++.|.+|+.. ++...... ....+..+++.| +++++++
T Consensus 78 ------~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~ 149 (305)
T 3dr2_A 78 ------VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDP 149 (305)
T ss_dssp ------EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECT-TSCEEEECC
T ss_pred ------EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCc
Confidence 11222344567889999987666655 45789999986 55433222 123567899999 9998887
Q ss_pred --EeC-------------CCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcC------CcEEEEEecCCc
Q 012367 368 --GSI-------------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT------GTCHFYKASGND 424 (465)
Q Consensus 368 --gs~-------------Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~d------G~v~iwd~~~~~ 424 (465)
|.. .+.|..||..++++.... .....+.++|+|||+.|+++... +.|.+|++.+..
T Consensus 150 ~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~ 226 (305)
T 3dr2_A 150 PFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA 226 (305)
T ss_dssp SGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE
T ss_pred CCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC
Confidence 332 256888888777655544 44567899999999988887765 789999998765
No 202
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.74 E-value=3e-06 Score=80.73 Aligned_cols=181 Identities=11% Similarity=0.092 Sum_probs=115.0
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (465)
+...+.+++++|+|+++++. ++.|.+||..++.........
T Consensus 52 ~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~------------------------------------- 92 (297)
T 3g4e_A 52 MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVD------------------------------------- 92 (297)
T ss_dssp CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECC-------------------------------------
T ss_pred CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecC-------------------------------------
Confidence 34679999999999965554 567899998765432110000
Q ss_pred cceeeeccccceEEEEecCCCEEEEEeC----------CCeEEEEeCC-CCeEeEEecCCCceEEEEEccCCCCEE-EEE
Q 012367 301 PLQELHGHKGDVLDLAWSNSNYLLSCSM----------DKTVRMWQVG-CNQCLNVFDHHNYVTCVQFNPIDDNYF-ISG 368 (465)
Q Consensus 301 ~~~~~~gh~~~V~~l~~s~~~~l~s~s~----------DgtV~lWD~~-~~~~l~~~~h~~~V~~i~fsp~~~~~l-~sg 368 (465)
. ......+.+++++|++.++.++. .....||.+. .++......+-.....++|+| +++.+ ++.
T Consensus 93 ~----~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~sp-dg~~lyv~~ 167 (297)
T 3g4e_A 93 N----DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSL-DHKIFYYID 167 (297)
T ss_dssp T----TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECT-TSCEEEEEE
T ss_pred C----CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcC-CCCEEEEec
Confidence 0 00123577899999874444432 1233444443 244444444555678999999 88765 555
Q ss_pred eCCCcEEEEeC--CCCeEE------ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccC
Q 012367 369 SIDGKVRIWGV--CEKRVV------DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG 440 (465)
Q Consensus 369 s~Dg~I~iwd~--~~~~~~------~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~ 440 (465)
+.++.|.+||+ .++.+. .+......+..+++.++|++.++....+.|..||..++++.. .+..+ .
T Consensus 168 ~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~-~i~~p------~ 240 (297)
T 3g4e_A 168 SLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQ-TVKLP------V 240 (297)
T ss_dssp GGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEE-EEECS------S
T ss_pred CCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEE-EEECC------C
Confidence 66789999987 455432 122344678899999999877777778889999998665532 33332 2
Q ss_pred CceeeEEEe-ecC
Q 012367 441 NKITGIQGR-ISK 452 (465)
Q Consensus 441 ~~It~~~f~-p~g 452 (465)
..++++.|. |++
T Consensus 241 ~~~t~~~f~g~d~ 253 (297)
T 3g4e_A 241 DKTTSCCFGGKNY 253 (297)
T ss_dssp SBEEEEEEESGGG
T ss_pred CCceEEEEeCCCC
Confidence 468888887 553
No 203
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.72 E-value=4.8e-07 Score=97.11 Aligned_cols=202 Identities=11% Similarity=0.098 Sum_probs=114.8
Q ss_pred ccCCCcEEEEEECCCCCEEEE-----EeCCCcEEEEecCCceeeeeeecCC--CCcccccCCCeEEeccCCCC----cee
Q 012367 219 QAHKGCIWTLKFSPDGRYLAS-----GGEDGVVRIWHVTSVAASCKSFTDD--GGFGSNAKEGKIKFGKKKSS----HVP 287 (465)
Q Consensus 219 ~~H~~~I~~l~fspdg~~LaS-----gs~Dg~V~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~ 287 (465)
.+|...|..++|||||++||- |+.+.+|++||+.++.......... ...... ....+.+...... ...
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 357778999999999998883 3444689999999877543322111 111111 1122222211110 000
Q ss_pred EecCCceeee--cCC-----cceeeec-cccceEEEEecCCC-EE-EEEeC---CCeEEEEeCCCC--eEeEEecCCCce
Q 012367 288 VVIPDEVFQI--EES-----PLQELHG-HKGDVLDLAWSNSN-YL-LSCSM---DKTVRMWQVGCN--QCLNVFDHHNYV 352 (465)
Q Consensus 288 ~~~~~~~~~~--~~~-----~~~~~~g-h~~~V~~l~~s~~~-~l-~s~s~---DgtV~lWD~~~~--~~l~~~~h~~~V 352 (465)
...+..++.. ... .+..... |...+..+.|+|++ +| ++.+. +..|.+||+.++ .......+....
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 0111223322 111 1222223 44567889999987 44 44433 258999999776 333333455555
Q ss_pred EEEEEccCCCCEEEEEeCC---CcEEEEeCCCCeE---EecccCCCCeEEEEEeeCCCEEEEEEcCC---cEEEEEecCC
Q 012367 353 TCVQFNPIDDNYFISGSID---GKVRIWGVCEKRV---VDWADVRDVISAICYIPDGKGFIVGSITG---TCHFYKASGN 423 (465)
Q Consensus 353 ~~i~fsp~~~~~l~sgs~D---g~I~iwd~~~~~~---~~~~~~~~~V~sv~~spdg~~l~sgs~dG---~v~iwd~~~~ 423 (465)
... +++.++.+++....+ +.|..+|+.++.. ..+..+...+. .|+|+++.|+....++ .|++|++.++
T Consensus 284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 554 555244455555444 5799999987643 34555665555 8999999887776644 6888888765
Q ss_pred c
Q 012367 424 D 424 (465)
Q Consensus 424 ~ 424 (465)
.
T Consensus 361 ~ 361 (693)
T 3iuj_A 361 R 361 (693)
T ss_dssp E
T ss_pred e
Confidence 4
No 204
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.68 E-value=1.6e-05 Score=74.75 Aligned_cols=214 Identities=7% Similarity=0.069 Sum_probs=130.1
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCC-CCcc--cccCCCeEEeccCCCCceeEecCCceee
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDD-GGFG--SNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (465)
.....+.+|++.++|+++++...++.|.+|+.. +.......... .... .....+.+.+..... ..++.
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~--------~~v~~ 87 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGA--------NKIGK 87 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTT--------TEEEE
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCC--------CeEEE
Confidence 345678999999999988887788999999987 43332111100 0000 001112222221111 12222
Q ss_pred ecC-Ccceee--eccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEE-ec-CCCceEEEEEccCCCCEEEEEeC
Q 012367 297 IEE-SPLQEL--HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV-FD-HHNYVTCVQFNPIDDNYFISGSI 370 (465)
Q Consensus 297 ~~~-~~~~~~--~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~-~~-h~~~V~~i~fsp~~~~~l~sgs~ 370 (465)
+.. .....+ ......+.++++.+++ ++++...++.|..||.. ++.... +. ....+.++++.| +++++++...
T Consensus 88 ~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~ 165 (300)
T 2qc5_A 88 LSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGS-DNALWFTENQ 165 (300)
T ss_dssp ECTTSCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSSEEEEETT
T ss_pred ECCCCCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECC-CCCEEEEecC
Confidence 211 111112 2234678899999876 45555557899999988 655432 22 345789999999 8887777776
Q ss_pred CCcEEEEeCCCCeEEecc--cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEE
Q 012367 371 DGKVRIWGVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQG 448 (465)
Q Consensus 371 Dg~I~iwd~~~~~~~~~~--~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f 448 (465)
++.|..||. ++....+. .....+..++++++|...++....+.|.+|+. ++.... .... .....+.++.+
T Consensus 166 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~~~----~~~~~~~~i~~ 237 (300)
T 2qc5_A 166 NNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE--YDIP----TPNARPHAITA 237 (300)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE--EECS----STTCCEEEEEE
T ss_pred CCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE--EECC----CCCCCceEEEE
Confidence 789999998 55554432 34457899999999977766666778999998 333322 2111 12345677777
Q ss_pred eecC
Q 012367 449 RISK 452 (465)
Q Consensus 449 ~p~g 452 (465)
.++|
T Consensus 238 d~~g 241 (300)
T 2qc5_A 238 GKNS 241 (300)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 7665
No 205
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.65 E-value=2.8e-06 Score=88.67 Aligned_cols=170 Identities=14% Similarity=0.056 Sum_probs=121.1
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeeecccc
Q 012367 231 SPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKG 310 (465)
Q Consensus 231 spdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 310 (465)
.|.+.++++...++.|.++|..+.+... .+. ...
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~~---------------------------------------------~i~-~g~ 197 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIKT---------------------------------------------VLD-TGY 197 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEE---------------------------------------------EEE-CSS
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEEE---------------------------------------------EEe-CCC
Confidence 3555678888899999999998754332 221 112
Q ss_pred ceEEEEecCCC-EEEEEeCCCeEEEEeCC--CCeEeEEecCCCceEEEEEc----cCCCCEEEEEeC-CCcEEEEeCCCC
Q 012367 311 DVLDLAWSNSN-YLLSCSMDKTVRMWQVG--CNQCLNVFDHHNYVTCVQFN----PIDDNYFISGSI-DGKVRIWGVCEK 382 (465)
Q Consensus 311 ~V~~l~~s~~~-~l~s~s~DgtV~lWD~~--~~~~l~~~~h~~~V~~i~fs----p~~~~~l~sgs~-Dg~I~iwd~~~~ 382 (465)
.+..+.++|++ ++++++.|+.|.+||+. +++.+..+........++|+ | +++++++++. ++.|.|+|..+.
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~p-DGk~l~v~n~~~~~v~ViD~~t~ 276 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETL 276 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTTC
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCC-CCCEEEEEEccCCeEEEEECCCC
Confidence 45588999986 78888999999999996 88888888766678899999 6 8888877665 589999999988
Q ss_pred eEEeccc-----------C-CCCeEEEEEeeCCCEEEE-EEcCCcEEEEEecCCcee-eeEeeecCcccccCCceeeEEE
Q 012367 383 RVVDWAD-----------V-RDVISAICYIPDGKGFIV-GSITGTCHFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQG 448 (465)
Q Consensus 383 ~~~~~~~-----------~-~~~V~sv~~spdg~~l~s-gs~dG~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~It~~~f 448 (465)
+++.... | ...+.++..++++..+++ ...+|.|.++|....+.. ...+. ......++.|
T Consensus 277 ~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-------~~~~~~d~~~ 349 (567)
T 1qks_A 277 EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-------AERFLHDGGL 349 (567)
T ss_dssp CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-------CCSSEEEEEE
T ss_pred cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-------ccccccCceE
Confidence 7765322 1 126788888988765544 445799999998765421 11221 2234556777
Q ss_pred eecCCc
Q 012367 449 RISKNY 454 (465)
Q Consensus 449 ~p~gs~ 454 (465)
+|+|.|
T Consensus 350 ~pdgr~ 355 (567)
T 1qks_A 350 DGSHRY 355 (567)
T ss_dssp CTTSCE
T ss_pred CCCCCE
Confidence 777665
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.62 E-value=2.8e-05 Score=72.98 Aligned_cols=213 Identities=8% Similarity=0.033 Sum_probs=128.9
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCC-Ccc--cccCCCeEEeccCCCCceeEecCCceeee
Q 012367 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG-GFG--SNAKEGKIKFGKKKSSHVPVVIPDEVFQI 297 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (465)
+...+.+|++.++|+++++...++.|..||.. +........... ... .....+.+.+..... ..++.+
T Consensus 60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~--------~~i~~~ 130 (300)
T 2qc5_A 60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNG--------DRIGKL 130 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTT--------TEEEEE
T ss_pred CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCC--------CeEEEE
Confidence 34678999999999988877778899999987 433211111010 000 001112222221111 122222
Q ss_pred cC-Cccee--eeccccceEEEEecCCC-EEEEEeCCCeEEEEeCCCCeEeEEe--cCCCceEEEEEccCCCCEEEEEeCC
Q 012367 298 EE-SPLQE--LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSID 371 (465)
Q Consensus 298 ~~-~~~~~--~~gh~~~V~~l~~s~~~-~l~s~s~DgtV~lWD~~~~~~l~~~--~h~~~V~~i~fsp~~~~~l~sgs~D 371 (465)
.. ..+.. +......+.++++.+++ ++++...++.|..||. +++..... .+...+.++++.+ +++++++....
T Consensus 131 ~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~ 208 (300)
T 2qc5_A 131 TADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGN-DGALWFVEIMG 208 (300)
T ss_dssp CTTSCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSSEEEEETTT
T ss_pred CCCCCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECC-CCCEEEEccCC
Confidence 11 11111 22234578899998876 4455555789999998 55544322 2345789999999 88888877777
Q ss_pred CcEEEEeCCCCeEEec--ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEe
Q 012367 372 GKVRIWGVCEKRVVDW--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGR 449 (465)
Q Consensus 372 g~I~iwd~~~~~~~~~--~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~ 449 (465)
+.|.+||. ++..... ......+.+++++++|+..++...++.|..|+.. +... .+.... ....+.++.+.
T Consensus 209 ~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~--~~~~~~----~~~~~~~i~~~ 280 (300)
T 2qc5_A 209 NKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTIQ--EYQLQT----ENAEPHGITFG 280 (300)
T ss_dssp TEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE--EEECCS----TTCCCCCEEEC
T ss_pred CEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcEE--EEECCc----cCCccceeEeC
Confidence 88999998 5554432 2345678999999999866666567899999984 4332 222221 23456777777
Q ss_pred ecC
Q 012367 450 ISK 452 (465)
Q Consensus 450 p~g 452 (465)
++|
T Consensus 281 ~~g 283 (300)
T 2qc5_A 281 KDG 283 (300)
T ss_dssp TTS
T ss_pred CCC
Confidence 664
No 207
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.61 E-value=1.6e-05 Score=78.55 Aligned_cols=74 Identities=16% Similarity=0.066 Sum_probs=58.5
Q ss_pred eEEEEEccCCCCEEEEEeC----------CCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCC-EEEEEE-cCCcEEEEE
Q 012367 352 VTCVQFNPIDDNYFISGSI----------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-GFIVGS-ITGTCHFYK 419 (465)
Q Consensus 352 V~~i~fsp~~~~~l~sgs~----------Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~-~l~sgs-~dG~v~iwd 419 (465)
...+.++| +++.++.+.. .+.|.++|+.+++++...........++|+|||+ .++++. .++.|.+||
T Consensus 269 ~~~~~~s~-d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD 347 (373)
T 2mad_H 269 WQQVAYLK-SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYD 347 (373)
T ss_pred eEeEEECC-CCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEE
Confidence 33477888 7666665542 3579999999999887666666799999999999 788877 489999999
Q ss_pred ecCCcee
Q 012367 420 ASGNDLK 426 (465)
Q Consensus 420 ~~~~~~~ 426 (465)
+.+++..
T Consensus 348 ~~t~~vv 354 (373)
T 2mad_H 348 AGAGDQD 354 (373)
T ss_pred CCCCCEE
Confidence 9988764
No 208
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.57 E-value=7.8e-06 Score=77.78 Aligned_cols=181 Identities=10% Similarity=0.094 Sum_probs=113.3
Q ss_pred CCCcEEEEEECCC-CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367 221 HKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (465)
Q Consensus 221 H~~~I~~l~fspd-g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (465)
+..---+..|+|+ +.++++...++.|..||..+....
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~------------------------------------------ 48 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ------------------------------------------ 48 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE------------------------------------------
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE------------------------------------------
Confidence 3444568889995 456677778899999998764221
Q ss_pred CcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecC-----CCceEEEEEccCCCCEEEEEeCC---
Q 012367 300 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDH-----HNYVTCVQFNPIDDNYFISGSID--- 371 (465)
Q Consensus 300 ~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h-----~~~V~~i~fsp~~~~~l~sgs~D--- 371 (465)
.+ .+...+.++++++++.|+.+. +..|.+||..+++....... ...+..+++.| +++++++....
T Consensus 49 ----~~-~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~ 121 (297)
T 3g4e_A 49 ----RV-TMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETA 121 (297)
T ss_dssp ----EE-ECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSB
T ss_pred ----EE-eCCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccc
Confidence 11 123568889999987566555 56899999988875443322 23588999999 89877765332
Q ss_pred ------CcEEEEeCC-CCeEEecccCCCCeEEEEEeeCCCEEEE-EEcCCcEEEEEec--CCceeeeEeeecCcccccCC
Q 012367 372 ------GKVRIWGVC-EKRVVDWADVRDVISAICYIPDGKGFIV-GSITGTCHFYKAS--GNDLKLEKVDFHDRKKTSGN 441 (465)
Q Consensus 372 ------g~I~iwd~~-~~~~~~~~~~~~~V~sv~~spdg~~l~s-gs~dG~v~iwd~~--~~~~~~~~~~~~~~~~~~~~ 441 (465)
....||.+. .+............+.++|+||++.|++ .+.++.|.+|++. ++.+........- .....
T Consensus 122 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~--~~~~~ 199 (297)
T 3g4e_A 122 PAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKL--EKEEQ 199 (297)
T ss_dssp TTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEEC--CGGGC
T ss_pred cccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEEC--CCCCC
Confidence 223444443 2444444444456789999999987755 4557899999984 4544222111110 00123
Q ss_pred ceeeEEEeecC
Q 012367 442 KITGIQGRISK 452 (465)
Q Consensus 442 ~It~~~f~p~g 452 (465)
...++.+.++|
T Consensus 200 ~p~g~~~d~~G 210 (297)
T 3g4e_A 200 IPDGMCIDAEG 210 (297)
T ss_dssp EEEEEEEBTTS
T ss_pred CCCeeEECCCC
Confidence 45667666665
No 209
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.56 E-value=3.6e-06 Score=81.98 Aligned_cols=187 Identities=10% Similarity=0.062 Sum_probs=118.5
Q ss_pred cCCCcEEEEEECCCCCEEEEEeC-----CCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGE-----DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~-----Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (465)
+|-..+.+|+|+++|+++++-.. ++.|.+||+.++........+.
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~------------------------------ 113 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPP------------------------------ 113 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCT------------------------------
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECCh------------------------------
Confidence 57778999999999986665543 5789999998765432221100
Q ss_pred eeecCCcceeeeccccceEEEEecCC-CEE-EEEe---CCCeEEEEeCCCCeEeEEecC-C-------------------
Q 012367 295 FQIEESPLQELHGHKGDVLDLAWSNS-NYL-LSCS---MDKTVRMWQVGCNQCLNVFDH-H------------------- 349 (465)
Q Consensus 295 ~~~~~~~~~~~~gh~~~V~~l~~s~~-~~l-~s~s---~DgtV~lWD~~~~~~l~~~~h-~------------------- 349 (465)
.. ..+...+.+++++++ +.+ ++.+ .++.|.+||+.+++..+.+.. .
T Consensus 114 ------~~---~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~ 184 (343)
T 2qe8_A 114 ------PI---TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIG 184 (343)
T ss_dssp ------TT---SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEE
T ss_pred ------hh---cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEec
Confidence 00 012344577888864 544 4544 678999999988876665521 0
Q ss_pred ----------CceEEEEEccCCCCEEEEEeCCC-cEEEEeCC---CCeE--------EecccCCCCeEEEEEeeCCCEEE
Q 012367 350 ----------NYVTCVQFNPIDDNYFISGSIDG-KVRIWGVC---EKRV--------VDWADVRDVISAICYIPDGKGFI 407 (465)
Q Consensus 350 ----------~~V~~i~fsp~~~~~l~sgs~Dg-~I~iwd~~---~~~~--------~~~~~~~~~V~sv~~spdg~~l~ 407 (465)
..+..|+|+| ++++|+.+..++ .|..++.. .+.+ +...++......++++++|.+++
T Consensus 185 ~~~g~~~~~~~~~~gia~s~-dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~v 263 (343)
T 2qe8_A 185 QPDGTVIRPHLGVNGIVLDA-ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYV 263 (343)
T ss_dssp CTTSCEECCCCCEEEEEECT-TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEE
T ss_pred cCCCceeceecccceeEecc-CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEE
Confidence 2357899999 998888887766 44444421 1110 01113344567899999999999
Q ss_pred EEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC
Q 012367 408 VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK 452 (465)
Q Consensus 408 sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g 452 (465)
+...++.|.+||..++++... .. . ......+++.|.+++
T Consensus 264 a~~~~~~V~~~d~~~G~~~~~-~~--~---~~~~~p~~va~~~~g 302 (343)
T 2qe8_A 264 GDLAHSAIGVITSADRAYKLL-VT--D---EKLSWTDSFNFGSDG 302 (343)
T ss_dssp EEGGGTEEEEEETTTTEEEEE-EE--C---GGGSCEEEEEECTTS
T ss_pred EccCCCeEEEEECCCCCEEEE-EE--C---CceecCCeeEECCCC
Confidence 888899999999844543221 11 1 013457777777654
No 210
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.52 E-value=1.6e-05 Score=76.85 Aligned_cols=206 Identities=12% Similarity=0.034 Sum_probs=119.1
Q ss_pred EEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeeeecCCCCccc--ccCCCeEEeccCCCCceeEecCCceeeec--C
Q 012367 225 IWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS--NAKEGKIKFGKKKSSHVPVVIPDEVFQIE--E 299 (465)
Q Consensus 225 I~~l~fspdg-~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 299 (465)
.-+..|+|++ .++++...++.|..||..++...... .. ..... ....+.+.+.. ...++.+. .
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~-~~v~~i~~~~dg~l~v~~----------~~gl~~~d~~~ 118 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVHA-LP-FMGSALAKISDSKQLIAS----------DDGLFLRDTAT 118 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE-CS-SCEEEEEEEETTEEEEEE----------TTEEEEEETTT
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-CC-CcceEEEEeCCCeEEEEE----------CCCEEEEECCC
Confidence 4678899974 46667777899999999876543211 11 11100 01112222211 11222221 1
Q ss_pred Ccceeeec-----cccceEEEEecCCCEEEEEeC-------CCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEE-
Q 012367 300 SPLQELHG-----HKGDVLDLAWSNSNYLLSCSM-------DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI- 366 (465)
Q Consensus 300 ~~~~~~~g-----h~~~V~~l~~s~~~~l~s~s~-------DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~- 366 (465)
..+..+.. ....+.+++++|++.++.++. .+.|..++ +++......+......++|+| +++.++
T Consensus 119 g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~-dg~~lyv 195 (326)
T 2ghs_A 119 GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSP-DGTTGYF 195 (326)
T ss_dssp CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECT-TSCEEEE
T ss_pred CcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcC-CCCEEEE
Confidence 22222211 124688999999874444432 24566666 565544334445678999999 887664
Q ss_pred EEeCCCcEEEEeCC--CC-e-----EE-ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCccc
Q 012367 367 SGSIDGKVRIWGVC--EK-R-----VV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK 437 (465)
Q Consensus 367 sgs~Dg~I~iwd~~--~~-~-----~~-~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~ 437 (465)
+.+.++.|.+||+. ++ . .. .+......+..+++.++|.+.++...++.|..|+..+ +. ...+...
T Consensus 196 ~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g-~~-~~~i~~~---- 269 (326)
T 2ghs_A 196 VDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG-NH-IARYEVP---- 269 (326)
T ss_dssp EETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC-CE-EEEEECS----
T ss_pred EECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCC-CE-EEEEECC----
Confidence 44557899999985 55 3 12 2223345678899999998777766678999999843 32 2233322
Q ss_pred ccCCceeeEEEe-ecCC
Q 012367 438 TSGNKITGIQGR-ISKN 453 (465)
Q Consensus 438 ~~~~~It~~~f~-p~gs 453 (465)
...++++.|. +++.
T Consensus 270 --~~~~~~~af~g~d~~ 284 (326)
T 2ghs_A 270 --GKQTTCPAFIGPDAS 284 (326)
T ss_dssp --CSBEEEEEEESTTSC
T ss_pred --CCCcEEEEEecCCCC
Confidence 2468888887 5543
No 211
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.51 E-value=2.2e-05 Score=75.88 Aligned_cols=187 Identities=7% Similarity=0.059 Sum_probs=108.5
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec------CCcee
Q 012367 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI------PDEVF 295 (465)
Q Consensus 222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 295 (465)
...|.+++|+|+|+++++. .++ |.+||..++............ .......+.+...+........ ...++
T Consensus 89 ~~~v~~i~~~~dg~l~v~~-~~g-l~~~d~~~g~~~~~~~~~~~~--~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~ 164 (326)
T 2ghs_A 89 PFMGSALAKISDSKQLIAS-DDG-LFLRDTATGVLTLHAELESDL--PGNRSNDGRMHPSGALWIGTMGRKAETGAGSIY 164 (326)
T ss_dssp SSCEEEEEEEETTEEEEEE-TTE-EEEEETTTCCEEEEECSSTTC--TTEEEEEEEECTTSCEEEEEEETTCCTTCEEEE
T ss_pred CCcceEEEEeCCCeEEEEE-CCC-EEEEECCCCcEEEEeeCCCCC--CCCCCCCEEECCCCCEEEEeCCCcCCCCceEEE
Confidence 3579999999999877764 444 999998776543221111000 0000011111111110000000 12233
Q ss_pred eecCCcceeeeccccceEEEEecCCC-EE-EEEeCCCeEEEEeCC--CC-e-----EeEEec-CCCceEEEEEccCCCCE
Q 012367 296 QIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVG--CN-Q-----CLNVFD-HHNYVTCVQFNPIDDNY 364 (465)
Q Consensus 296 ~~~~~~~~~~~gh~~~V~~l~~s~~~-~l-~s~s~DgtV~lWD~~--~~-~-----~l~~~~-h~~~V~~i~fsp~~~~~ 364 (465)
.+....+..+..+......++|+|++ .+ ++.+.++.|.+||+. ++ . ....+. ....+..+++.+ ++++
T Consensus 165 ~~~~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~-~G~l 243 (326)
T 2ghs_A 165 HVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHI 243 (326)
T ss_dssp EEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCE
T ss_pred EEeCCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC-CCCE
Confidence 33322222232333456789999986 44 455667899999985 55 3 222232 345678899999 8888
Q ss_pred EEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEe-eCCCEEEEEEcCC
Q 012367 365 FISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYI-PDGKGFIVGSITG 413 (465)
Q Consensus 365 l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~s-pdg~~l~sgs~dG 413 (465)
.++...++.|.+||.....+..+......+++++|. |+++.|++++..+
T Consensus 244 wva~~~~~~v~~~d~~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 244 WNARWGEGAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp EEEEETTTEEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred EEEEeCCCEEEEECCCCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 888777789999998433333344455579999998 8988877766543
No 212
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.50 E-value=6.3e-06 Score=80.28 Aligned_cols=159 Identities=13% Similarity=0.094 Sum_probs=107.5
Q ss_pred CcEEEEEECCCCCEEEEEe--CCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367 223 GCIWTLKFSPDGRYLASGG--EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (465)
Q Consensus 223 ~~I~~l~fspdg~~LaSgs--~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (465)
.....|+++|+|+++++.. .++.++||.+.++... .+...
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~--~~p~~------------------------------------ 58 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI--PFPPQ------------------------------------ 58 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE--ESCCC------------------------------------
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee--cCCCc------------------------------------
Confidence 6789999999999988864 2344677766432211 00000
Q ss_pred cceeeeccccceEEEEecCCCEEEEEeC------CCeEEEEeCCCCeEeEEecC-------CCceEEEEEccCCCCEEEE
Q 012367 301 PLQELHGHKGDVLDLAWSNSNYLLSCSM------DKTVRMWQVGCNQCLNVFDH-------HNYVTCVQFNPIDDNYFIS 367 (465)
Q Consensus 301 ~~~~~~gh~~~V~~l~~s~~~~l~s~s~------DgtV~lWD~~~~~~l~~~~h-------~~~V~~i~fsp~~~~~l~s 367 (465)
.....+|...+.++++++++.|+.+.. +..|.+||+.+++.++.+.. ...+..++++|.++..+++
T Consensus 59 -~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvt 137 (343)
T 2qe8_A 59 -SGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYIS 137 (343)
T ss_dssp -CSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEE
T ss_pred -ccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEE
Confidence 001124667889999999886555443 57899999999998777642 2356899999834555566
Q ss_pred Ee---CCCcEEEEeCCCCeEEecccC------------------------------CCCeEEEEEeeCCCEEEEEEcCCc
Q 012367 368 GS---IDGKVRIWGVCEKRVVDWADV------------------------------RDVISAICYIPDGKGFIVGSITGT 414 (465)
Q Consensus 368 gs---~Dg~I~iwd~~~~~~~~~~~~------------------------------~~~V~sv~~spdg~~l~sgs~dG~ 414 (465)
.. .++.|.+||+.+++....... ...+..++|+|||+.|+++...+.
T Consensus 138 d~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~ 217 (343)
T 2qe8_A 138 DPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST 217 (343)
T ss_dssp ECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS
T ss_pred cCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC
Confidence 65 678999999988776553211 123688999999999999887764
Q ss_pred EEEEEec
Q 012367 415 CHFYKAS 421 (465)
Q Consensus 415 v~iwd~~ 421 (465)
++|.+.
T Consensus 218 -~l~~~~ 223 (343)
T 2qe8_A 218 -SMYRIK 223 (343)
T ss_dssp -EEEEEE
T ss_pred -eEEEEE
Confidence 455543
No 213
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.48 E-value=1e-06 Score=94.48 Aligned_cols=159 Identities=11% Similarity=-0.059 Sum_probs=105.7
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCC----cEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367 219 QAHKGCIWTLKFSPDGRYLASGGEDG----VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (465)
Q Consensus 219 ~~H~~~I~~l~fspdg~~LaSgs~Dg----~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (465)
.+|...+..+.|||||++|+.++.++ .|.+|+..++
T Consensus 223 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~---------------------------------------- 262 (695)
T 2bkl_A 223 TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK---------------------------------------- 262 (695)
T ss_dssp CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS----------------------------------------
T ss_pred CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC----------------------------------------
Confidence 45667899999999999998887666 4445443221
Q ss_pred eeecCCcceeeeccccceEEEEecCCCEEEEEeC----CCeEEEEeCCCCeE---eEEecC--CCceEEEEEccCCCCEE
Q 012367 295 FQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSM----DKTVRMWQVGCNQC---LNVFDH--HNYVTCVQFNPIDDNYF 365 (465)
Q Consensus 295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~----DgtV~lWD~~~~~~---l~~~~h--~~~V~~i~fsp~~~~~l 365 (465)
....+..+...+....|++++ ++..+. ++.|.+||+.++.. ...+.+ ...+..++|+ ++.++
T Consensus 263 ------~~~~l~~~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~lv 333 (695)
T 2bkl_A 263 ------DFRLLVKGVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV--GGHLS 333 (695)
T ss_dssp ------SCEEEEECSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE--TTEEE
T ss_pred ------ceEEeecCCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE--CCEEE
Confidence 122333344455555565445 444443 58899999987653 344443 4467888887 57788
Q ss_pred EEEeCCCcEEEEeCC--CCeEEecccC-CCCeEEEEEeeCCCEEEEEE----cCCcEEEEEecCCcee
Q 012367 366 ISGSIDGKVRIWGVC--EKRVVDWADV-RDVISAICYIPDGKGFIVGS----ITGTCHFYKASGNDLK 426 (465)
Q Consensus 366 ~sgs~Dg~I~iwd~~--~~~~~~~~~~-~~~V~sv~~spdg~~l~sgs----~dG~v~iwd~~~~~~~ 426 (465)
++...|+..+||.+. .+....+..+ ...|..++++|+++.++... ..++|++||+.+++..
T Consensus 334 ~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~ 401 (695)
T 2bkl_A 334 LEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSE 401 (695)
T ss_dssp EEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred EEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence 999999988888654 3333334333 56788889999998776433 3478999999887654
No 214
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.45 E-value=6.8e-06 Score=81.11 Aligned_cols=196 Identities=13% Similarity=0.025 Sum_probs=115.8
Q ss_pred EEEEEECCCCCEEEEEeC--CCcEEEEecCCceeeeeeecCCCCcc-cccCCCeEEeccCCCCceeEecC--CceeeecC
Q 012367 225 IWTLKFSPDGRYLASGGE--DGVVRIWHVTSVAASCKSFTDDGGFG-SNAKEGKIKFGKKKSSHVPVVIP--DEVFQIEE 299 (465)
Q Consensus 225 I~~l~fspdg~~LaSgs~--Dg~V~iWd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 299 (465)
-..+.|+|||++|+.+.. ++.|.|+|+.+.+.......+..... ............. +....+... +.+.....
T Consensus 139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~D-G~~~~v~~~~~g~v~~~~~ 217 (386)
T 3sjl_D 139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRD-GSLAKVAFGTEGTPEITHT 217 (386)
T ss_dssp GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETT-SCEEEEECCSSSCCEEEEC
T ss_pred CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCC-CCEEEEECCCCCeEEEeec
Confidence 346899999999888864 68999999999887766543221000 0000000111111 111111111 11100000
Q ss_pred CcceeeeccccceE-EEEec-CCCEEEEEeCCCeEEEEeCCCCe--EeEEec-----------CCCceEEEEEccCCCCE
Q 012367 300 SPLQELHGHKGDVL-DLAWS-NSNYLLSCSMDKTVRMWQVGCNQ--CLNVFD-----------HHNYVTCVQFNPIDDNY 364 (465)
Q Consensus 300 ~~~~~~~gh~~~V~-~l~~s-~~~~l~s~s~DgtV~lWD~~~~~--~l~~~~-----------h~~~V~~i~fsp~~~~~ 364 (465)
..+..-...+. ...|. +++.++..+.+|+|.+.|+.++. .+..+. .......++++| +++.
T Consensus 218 ---~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~-~~~~ 293 (386)
T 3sjl_D 218 ---EVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDR 293 (386)
T ss_dssp ---CCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTE
T ss_pred ---ceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC-CCCe
Confidence 00000111111 13553 57766667778999999997654 332221 122334577788 6666
Q ss_pred EEEEeC----------CCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCC-EEEEEEc-CCcEEEEEecCCce
Q 012367 365 FISGSI----------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-GFIVGSI-TGTCHFYKASGNDL 425 (465)
Q Consensus 365 l~sgs~----------Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~-~l~sgs~-dG~v~iwd~~~~~~ 425 (465)
++.... .+.|.++|+.+++++........+..++++||++ .|+++.. ++.|.++|..+++.
T Consensus 294 lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 294 IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE 366 (386)
T ss_dssp EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred EEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcE
Confidence 655432 2579999999999988666666889999999997 6777554 89999999998875
No 215
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.45 E-value=1.3e-07 Score=93.62 Aligned_cols=184 Identities=10% Similarity=-0.023 Sum_probs=91.5
Q ss_pred CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccc-cCCCeEEeccCCCCceeEecCCceeeecCCcceeeecccc-
Q 012367 233 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN-AKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKG- 310 (465)
Q Consensus 233 dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~- 310 (465)
++..+++++.||.|+.||..+++....... ....... ...+.+.+.........++... .++.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~-----tG~~~w~~~~~~~~ 81 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSK-----NNEGLTKLPFTIPE 81 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC----------CCSEECSCCHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECC-----CCceeeeeeccCcc
Confidence 567899999999999999999888766654 2111111 1111111111111111111110 1222222222211
Q ss_pred ceE-EEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEeccc
Q 012367 311 DVL-DLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD 389 (465)
Q Consensus 311 ~V~-~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~ 389 (465)
.+. ...+..++.+++++.|+.|+.||..+|+.+..+.... ...++| ++..+++++.|+.|+.||..+++.+....
T Consensus 82 ~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p-~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 157 (369)
T 2hz6_A 82 LVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSP-STSLLYLGRTEYTITMYDTKTRELRWNAT 157 (369)
T ss_dssp HHTTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred ccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccc-cCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence 110 1111235678888899999999999999988886443 245667 78889999999999999999887643211
Q ss_pred CCCCeEEEEEeeCC---CEEEEEEcCCcEEEEEecCCceee
Q 012367 390 VRDVISAICYIPDG---KGFIVGSITGTCHFYKASGNDLKL 427 (465)
Q Consensus 390 ~~~~V~sv~~spdg---~~l~sgs~dG~v~iwd~~~~~~~~ 427 (465)
.. .....++.++. ..+++++.+|.++.||..+++...
T Consensus 158 ~~-~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W 197 (369)
T 2hz6_A 158 YF-DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLW 197 (369)
T ss_dssp EE-EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEE
T ss_pred cc-cccCccccCCccccceEEEECCCCEEEEEECCCCcEEE
Confidence 11 11223333332 567888999999999999887643
No 216
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.44 E-value=1.2e-05 Score=80.59 Aligned_cols=157 Identities=15% Similarity=0.134 Sum_probs=109.3
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCC
Q 012367 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (465)
+...+++++++|++..|+.+..++.|..||..+.........
T Consensus 217 ~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~-------------------------------------- 258 (409)
T 3hrp_A 217 FSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQL-------------------------------------- 258 (409)
T ss_dssp SCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEEC--------------------------------------
T ss_pred hcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecc--------------------------------------
Confidence 446678999999544555577789999999876432110000
Q ss_pred cceeeeccccc--eEEEEecC-CC-EEEEEeCCCeEEEEeCCCCeEeEEecCC---------------CceEEEEEccCC
Q 012367 301 PLQELHGHKGD--VLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFDHH---------------NYVTCVQFNPID 361 (465)
Q Consensus 301 ~~~~~~gh~~~--V~~l~~s~-~~-~l~s~s~DgtV~lWD~~~~~~l~~~~h~---------------~~V~~i~fsp~~ 361 (465)
...++... ...++|+| ++ ++++...++.|+.|+.... ......+. .....++++| +
T Consensus 259 ---~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~-d 333 (409)
T 3hrp_A 259 ---ELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE-D 333 (409)
T ss_dssp ---CCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT-T
T ss_pred ---cccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC-C
Confidence 00011111 12899999 45 5556667889999998643 33333332 3578999999 8
Q ss_pred CCEEEEEe-CCCcEEEEeCCCCeEEecccC---------------CCCeEEEEEeeCCCEEEEEEcCCcEEEEEe
Q 012367 362 DNYFISGS-IDGKVRIWGVCEKRVVDWADV---------------RDVISAICYIPDGKGFIVGSITGTCHFYKA 420 (465)
Q Consensus 362 ~~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~---------------~~~V~sv~~spdg~~l~sgs~dG~v~iwd~ 420 (465)
++++++-. .++.|+.|++.++.+..+.++ -.....++++|+|.++++-..+++|+.+++
T Consensus 334 G~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 334 GNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 99888887 889999999888887765554 246899999999888888778889988875
No 217
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.41 E-value=3.9e-05 Score=71.73 Aligned_cols=185 Identities=12% Similarity=0.027 Sum_probs=120.6
Q ss_pred cCCC--cEEEEEECCCCCEEEEEeC--CCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367 220 AHKG--CIWTLKFSPDGRYLASGGE--DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (465)
Q Consensus 220 ~H~~--~I~~l~fspdg~~LaSgs~--Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (465)
.|.. ....|.|+|++.++++.+. ++.|++.|+.+++........
T Consensus 16 p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~-------------------------------- 63 (266)
T 2iwa_A 16 PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMD-------------------------------- 63 (266)
T ss_dssp ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECC--------------------------------
T ss_pred ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecC--------------------------------
Confidence 4553 3679999998765555553 689999999987654332210
Q ss_pred eecCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCC-CceEEEEEccCCCCEEEEEeCCCcE
Q 012367 296 QIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHH-NYVTCVQFNPIDDNYFISGSIDGKV 374 (465)
Q Consensus 296 ~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~-~~V~~i~fsp~~~~~l~sgs~Dg~I 374 (465)
.+ .....+++..+...++.-.++.|.++|..+.+.+..+... ..-+. +.+ ++..++++..++.|
T Consensus 64 -----------~~-~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~g--lt~-Dg~~l~vs~gs~~l 128 (266)
T 2iwa_A 64 -----------DS-YFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWG--LAT-DGKILYGSDGTSIL 128 (266)
T ss_dssp -----------TT-CCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCE--EEE-CSSSEEEECSSSEE
T ss_pred -----------CC-cceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEE--EEE-CCCEEEEECCCCeE
Confidence 11 1112455555445556667899999999999999999654 33233 445 55555555678999
Q ss_pred EEEeCCCCeEEecccC------CCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCc-------ccccCC
Q 012367 375 RIWGVCEKRVVDWADV------RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR-------KKTSGN 441 (465)
Q Consensus 375 ~iwd~~~~~~~~~~~~------~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~-------~~~~~~ 441 (465)
.++|..+.++...... -..++.+.|. +|...+..-.++.|.+.|..+++. ...+.+.+. ......
T Consensus 129 ~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V-~~~I~~~g~~~~~~~~~~~~~~ 206 (266)
T 2iwa_A 129 YEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTL-LGWILLPNLRKKLIDEGFRDID 206 (266)
T ss_dssp EEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCE-EEEEECHHHHHHHHHTTCTTCC
T ss_pred EEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcE-EEEEECCCcccccccccccccC
Confidence 9999999776653221 1246788888 775444444578999999998876 335554321 112234
Q ss_pred ceeeEEEeecCC
Q 012367 442 KITGIQGRISKN 453 (465)
Q Consensus 442 ~It~~~f~p~gs 453 (465)
...|++|.|++.
T Consensus 207 v~nGIa~~~~~~ 218 (266)
T 2iwa_A 207 VLNGIAWDQENK 218 (266)
T ss_dssp CEEEEEEETTTT
T ss_pred ceEEEEEcCCCC
Confidence 678999998864
No 218
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.38 E-value=1.7e-05 Score=79.14 Aligned_cols=141 Identities=7% Similarity=0.102 Sum_probs=101.0
Q ss_pred EEEEecCCCEEEEEeCC------CeEEEEeCCCCeEeEEecCC----CceEEEEEccCCCCEEEEEe-------------
Q 012367 313 LDLAWSNSNYLLSCSMD------KTVRMWQVGCNQCLNVFDHH----NYVTCVQFNPIDDNYFISGS------------- 369 (465)
Q Consensus 313 ~~l~~s~~~~l~s~s~D------gtV~lWD~~~~~~l~~~~h~----~~V~~i~fsp~~~~~l~sgs------------- 369 (465)
..+...|+++++++..+ +.|.+.|..+++.+..+... ..-+.+.|+| +++.+++..
T Consensus 141 h~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~ 219 (462)
T 2ece_A 141 HTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKL 219 (462)
T ss_dssp EEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCT
T ss_pred cceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccch
Confidence 45667788877776666 78999999999999998522 2345688899 889888874
Q ss_pred ------CCCcEEEEeCCCCeEEecccCC---CCeEEEEE--eeCCCEEEEEE------cCCcEEEEEecCCceeee-Eee
Q 012367 370 ------IDGKVRIWGVCEKRVVDWADVR---DVISAICY--IPDGKGFIVGS------ITGTCHFYKASGNDLKLE-KVD 431 (465)
Q Consensus 370 ------~Dg~I~iwd~~~~~~~~~~~~~---~~V~sv~~--spdg~~l~sgs------~dG~v~iwd~~~~~~~~~-~~~ 431 (465)
.+.+|.+||+.+++++...... .....+.| +|+|+++.+++ .+++|.+|....+..... .+.
T Consensus 220 ~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vId 299 (462)
T 2ece_A 220 EHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIE 299 (462)
T ss_dssp TTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEE
T ss_pred hhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEe
Confidence 3689999999988776644332 34555656 99999988877 467898888877666554 333
Q ss_pred ecCccccc------------CCceeeEEEeecCCc
Q 012367 432 FHDRKKTS------------GNKITGIQGRISKNY 454 (465)
Q Consensus 432 ~~~~~~~~------------~~~It~~~f~p~gs~ 454 (465)
....+... ....+++.++|+|.+
T Consensus 300 i~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrf 334 (462)
T 2ece_A 300 IPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKF 334 (462)
T ss_dssp ECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCE
T ss_pred CCCccccccccccccccccCCCceeEEEECCCCCE
Confidence 33211110 356889999999876
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.37 E-value=5.7e-06 Score=79.03 Aligned_cols=179 Identities=9% Similarity=0.035 Sum_probs=111.7
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec
Q 012367 219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 298 (465)
Q Consensus 219 ~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (465)
..+.+.+.+++++++|+++++...++.|.+|+.. +..... .
T Consensus 82 ~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~-~------------------------------------- 122 (305)
T 3dr2_A 82 LDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLL-V------------------------------------- 122 (305)
T ss_dssp EESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE-E-------------------------------------
T ss_pred eCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEE-E-------------------------------------
Confidence 3456678999999999977776667889999875 221100 0
Q ss_pred CCcceeeec-cccceEEEEecCCCEEEE-----EeC-------------CCeEEEEeCCCCeEeEEecCCCceEEEEEcc
Q 012367 299 ESPLQELHG-HKGDVLDLAWSNSNYLLS-----CSM-------------DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNP 359 (465)
Q Consensus 299 ~~~~~~~~g-h~~~V~~l~~s~~~~l~s-----~s~-------------DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp 359 (465)
....+ ....+.++++.+++.+.. |.. .+.|..||..+++..... .......++|+|
T Consensus 123 ----~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~sp 197 (305)
T 3dr2_A 123 ----GRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSP 197 (305)
T ss_dssp ----CEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECT
T ss_pred ----eccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcC
Confidence 00001 113456788888764443 322 256888888767654444 445678899999
Q ss_pred CCCCEEEEEeCC------CcEEEEeCCCCeEEe----cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeE
Q 012367 360 IDDNYFISGSID------GKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK 429 (465)
Q Consensus 360 ~~~~~l~sgs~D------g~I~iwd~~~~~~~~----~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~ 429 (465)
+++.|+.+... +.|.+|++..+.+.. .......+..++++++|+ |.+++.+| |.+|+..+..+ ..
T Consensus 198 -dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~g-v~~~~~~g~~~--~~ 272 (305)
T 3dr2_A 198 -DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGTG-VCVFDSDGQLL--GH 272 (305)
T ss_dssp -TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCSSE-EEEECTTSCEE--EE
T ss_pred -CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecCCc-EEEECCCCCEE--EE
Confidence 88877776655 689999987543211 111234466789999998 45555554 89999854432 23
Q ss_pred eeecCcccccCCceeeEEEeecCC
Q 012367 430 VDFHDRKKTSGNKITGIQGRISKN 453 (465)
Q Consensus 430 ~~~~~~~~~~~~~It~~~f~p~gs 453 (465)
+.... .++++.|.|++.
T Consensus 273 ~~~~~-------~~~~~~f~~d~~ 289 (305)
T 3dr2_A 273 IPTPG-------TASNCTFDQAQQ 289 (305)
T ss_dssp EECSS-------CCCEEEECTTSC
T ss_pred EECCC-------ceeEEEEeCCCC
Confidence 33222 377788886543
No 220
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.34 E-value=1.1e-05 Score=87.03 Aligned_cols=161 Identities=15% Similarity=0.069 Sum_probs=103.1
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCC-----cEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367 220 AHKGCIWTLKFSPDGRYLASGGEDG-----VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (465)
Q Consensus 220 ~H~~~I~~l~fspdg~~LaSgs~Dg-----~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (465)
.|...+..+.|||||++|+..+.++ .|.+||+.++...
T Consensus 265 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~------------------------------------- 307 (741)
T 1yr2_A 265 ELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIG------------------------------------- 307 (741)
T ss_dssp TCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEEC-------------------------------------
T ss_pred CCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCc-------------------------------------
Confidence 3445689999999999998887654 7888887653110
Q ss_pred eeecCCcceeeeccccceEEEEecCCCEEEEEeC----CCeEEEEeCCCC--eEeEEecC-CCceEEEEEccCCCCEEEE
Q 012367 295 FQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSM----DKTVRMWQVGCN--QCLNVFDH-HNYVTCVQFNPIDDNYFIS 367 (465)
Q Consensus 295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~----DgtV~lWD~~~~--~~l~~~~h-~~~V~~i~fsp~~~~~l~s 367 (465)
+...+..+...+....+..++.|+..+. ++.|.+||+.++ .....+.+ ...+..+.+. ++.++++
T Consensus 308 ------~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~ 379 (741)
T 1yr2_A 308 ------PVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFAS 379 (741)
T ss_dssp ------CCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEE
T ss_pred ------ccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEE
Confidence 0122223333333333333456666555 345999999874 34444443 3456677776 5678888
Q ss_pred EeCCCcEEEEeCC--CCeEEeccc-CCCCeEEEEEeeCCCEEEEEE----cCCcEEEEEecCCce
Q 012367 368 GSIDGKVRIWGVC--EKRVVDWAD-VRDVISAICYIPDGKGFIVGS----ITGTCHFYKASGNDL 425 (465)
Q Consensus 368 gs~Dg~I~iwd~~--~~~~~~~~~-~~~~V~sv~~spdg~~l~sgs----~dG~v~iwd~~~~~~ 425 (465)
...|+..+||.+. .+....+.. ....|..++++|+++.|+... ..+++++||+.+++.
T Consensus 380 ~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 380 YIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred EEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 8889987777553 343333332 456789999999998665332 357899999987764
No 221
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.30 E-value=5.1e-05 Score=75.79 Aligned_cols=186 Identities=15% Similarity=0.164 Sum_probs=116.8
Q ss_pred EEEEEECCCCCEEEEEeCC------CcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec
Q 012367 225 IWTLKFSPDGRYLASGGED------GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 298 (465)
Q Consensus 225 I~~l~fspdg~~LaSgs~D------g~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (465)
-..+..+|+| +++++..+ |.|.+.|..+.+.........
T Consensus 140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~---------------------------------- 184 (462)
T 2ece_A 140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDR---------------------------------- 184 (462)
T ss_dssp EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBC----------------------------------
T ss_pred ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCC----------------------------------
Confidence 3467888999 77777665 778898888765443221100
Q ss_pred CCcceeeeccccceEEEEecCCC-EEEEEe-------------------CCCeEEEEeCCCCeEeEEecCC---CceEEE
Q 012367 299 ESPLQELHGHKGDVLDLAWSNSN-YLLSCS-------------------MDKTVRMWQVGCNQCLNVFDHH---NYVTCV 355 (465)
Q Consensus 299 ~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s-------------------~DgtV~lWD~~~~~~l~~~~h~---~~V~~i 355 (465)
+-..--.++.|+|++ .++++. .+.+|.+||+.+++.+.++... .....+
T Consensus 185 --------~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i 256 (462)
T 2ece_A 185 --------GDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALEL 256 (462)
T ss_dssp --------TTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEE
T ss_pred --------CCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCcccee
Confidence 000112246677764 555553 3789999999999888888653 244556
Q ss_pred EE--ccCCCCEEEEEe------CCCcEEEEeCCCCe-----EEeccc----------------CCCCeEEEEEeeCCCEE
Q 012367 356 QF--NPIDDNYFISGS------IDGKVRIWGVCEKR-----VVDWAD----------------VRDVISAICYIPDGKGF 406 (465)
Q Consensus 356 ~f--sp~~~~~l~sgs------~Dg~I~iwd~~~~~-----~~~~~~----------------~~~~V~sv~~spdg~~l 406 (465)
.| +| ++++++.++ .+++|.+|....+. ++.... ....+..|.++|||++|
T Consensus 257 ~f~~~P-dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfL 335 (462)
T 2ece_A 257 RPLHDP-TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFL 335 (462)
T ss_dssp EECSST-TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEE
T ss_pred EeeECC-CCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEE
Confidence 56 99 888877776 56688776654442 111111 02457889999999999
Q ss_pred EEEEc-CCcEEEEEec-CCceeee-EeeecCcc--------cccCCceeeEEEeecCCc
Q 012367 407 IVGSI-TGTCHFYKAS-GNDLKLE-KVDFHDRK--------KTSGNKITGIQGRISKNY 454 (465)
Q Consensus 407 ~sgs~-dG~v~iwd~~-~~~~~~~-~~~~~~~~--------~~~~~~It~~~f~p~gs~ 454 (465)
.++.. .+.|.+||+. ..++.+. ++...+.. ..-...-..++++|+|.+
T Consensus 336 YVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~ 394 (462)
T 2ece_A 336 YLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRR 394 (462)
T ss_dssp EEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSE
T ss_pred EEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCE
Confidence 98887 6899999986 3333333 44443211 000113467888888765
No 222
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.26 E-value=2.6e-05 Score=77.00 Aligned_cols=149 Identities=11% Similarity=0.021 Sum_probs=105.8
Q ss_pred EEEECCCCCEEEEEeC-----CCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCc
Q 012367 227 TLKFSPDGRYLASGGE-----DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 301 (465)
Q Consensus 227 ~l~fspdg~~LaSgs~-----Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (465)
.....|+++.++.... ++.|.+.|..+.+...
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~------------------------------------------- 73 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIG------------------------------------------- 73 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEE-------------------------------------------
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEE-------------------------------------------
Confidence 3456789998877765 6899999998765432
Q ss_pred ceeeeccccceEEEEecCCC-EEEEEe----------CCCeEEEEeCCCCeEeEEecCC--------CceEEEEEccCCC
Q 012367 302 LQELHGHKGDVLDLAWSNSN-YLLSCS----------MDKTVRMWQVGCNQCLNVFDHH--------NYVTCVQFNPIDD 362 (465)
Q Consensus 302 ~~~~~gh~~~V~~l~~s~~~-~l~s~s----------~DgtV~lWD~~~~~~l~~~~h~--------~~V~~i~fsp~~~ 362 (465)
.+..-..+ .++++|++ +++.++ .+++|.+||..+.+.+..+.-. .....++|+| ++
T Consensus 74 --~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DG 148 (386)
T 3sjl_D 74 --MIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DG 148 (386)
T ss_dssp --EEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TS
T ss_pred --EEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CC
Confidence 22212223 38999986 444443 3678999999999998887421 2567899999 99
Q ss_pred CEEEEEeC--CCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC-Cce
Q 012367 363 NYFISGSI--DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG-NDL 425 (465)
Q Consensus 363 ~~l~sgs~--Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~-~~~ 425 (465)
++++.+.. ++.|.++|+.+++++........ ...+....+.+++.+.||.+.+.++.+ ++.
T Consensus 149 k~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v 212 (386)
T 3sjl_D 149 KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP 212 (386)
T ss_dssp SEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred CEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeE
Confidence 98888764 68999999999998875544332 223333456777888899988888876 554
No 223
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.23 E-value=0.00019 Score=66.56 Aligned_cols=187 Identities=12% Similarity=0.063 Sum_probs=121.1
Q ss_pred hhhccCCCc--EEEEEECCCCCEEEEEeCCC--cEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecC
Q 012367 216 QEIQAHKGC--IWTLKFSPDGRYLASGGEDG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (465)
Q Consensus 216 ~~l~~H~~~--I~~l~fspdg~~LaSgs~Dg--~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (465)
+++ .|... ...|.|+ ++.++.++|.+| .|+++|+.+++........
T Consensus 35 ~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~---------------------------- 84 (262)
T 3nol_A 35 HSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG---------------------------- 84 (262)
T ss_dssp EEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC----------------------------
T ss_pred EEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC----------------------------
Confidence 444 45433 4789998 777778888877 8999999987654432211
Q ss_pred CceeeecCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCC
Q 012367 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID 371 (465)
Q Consensus 292 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~D 371 (465)
. .-.-..++...+...+..-.++.+.+||..+.+.+..+.....-+.+++ ++..|+.+..+
T Consensus 85 ---------------~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt~---dg~~L~~SdGs 145 (262)
T 3nol_A 85 ---------------K-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLTH---NDQYLIMSDGT 145 (262)
T ss_dssp ---------------T-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCEEE---CSSCEEECCSS
T ss_pred ---------------C-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceEEec---CCCEEEEECCC
Confidence 0 0011223444444445555689999999999999999976554345554 55555555557
Q ss_pred CcEEEEeCCCCeEEecccC---C---CCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcc------ccc
Q 012367 372 GKVRIWGVCEKRVVDWADV---R---DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK------KTS 439 (465)
Q Consensus 372 g~I~iwd~~~~~~~~~~~~---~---~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~------~~~ 439 (465)
+.|.++|..+.+++..... . ..++.+.|. +|+..+..-.++.|.+.|..+++.. ..+.+.+-. ...
T Consensus 146 ~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~-~~Id~~~L~~~~~~~~~~ 223 (262)
T 3nol_A 146 PVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVT-GIIDLNGILAEAGPLPSP 223 (262)
T ss_dssp SEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEE-EEEECTTGGGGSCSCCSS
T ss_pred CeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEE-EEEECCcCccccccccCc
Confidence 8899999998877653221 1 345667776 7754444445889999999888763 355544321 122
Q ss_pred CCceeeEEEeecCC
Q 012367 440 GNKITGIQGRISKN 453 (465)
Q Consensus 440 ~~~It~~~f~p~gs 453 (465)
.....|+++.|.+.
T Consensus 224 ~~vlNGIA~dp~~~ 237 (262)
T 3nol_A 224 IDVLNGIAWDKEHH 237 (262)
T ss_dssp CCCEEEEEEETTTT
T ss_pred CCceEEEEEcCCCC
Confidence 45779999998754
No 224
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.23 E-value=0.00011 Score=68.28 Aligned_cols=178 Identities=11% Similarity=0.028 Sum_probs=120.6
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCccee
Q 012367 225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 304 (465)
Q Consensus 225 I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (465)
...|.|+ ++.+..+.+.+|.|+++|+.+++..... .
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l------------------------------------------ 92 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R------------------------------------------ 92 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E------------------------------------------
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C------------------------------------------
Confidence 5788897 4678888889999999999987554322 1
Q ss_pred eeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeE
Q 012367 305 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 384 (465)
Q Consensus 305 ~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~ 384 (465)
.. ...-..+++..+...+..-.++.+.+||..+.+.+..+.....-+.+++ ++..|+.+..++.|.++|..+.++
T Consensus 93 -~~-~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt~---Dg~~L~vSdGs~~l~~iDp~T~~v 167 (268)
T 3nok_A 93 -LG-NIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLCY---WNGKLVRSDGGTMLTFHEPDGFAL 167 (268)
T ss_dssp -CT-TCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEEE---ETTEEEEECSSSEEEEECTTTCCE
T ss_pred -CC-CcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEec---CCCEEEEECCCCEEEEEcCCCCeE
Confidence 00 0011234555555666666789999999999999999975554455654 567777666789999999999877
Q ss_pred EecccC------CCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCc-------ccccCCceeeEEEeec
Q 012367 385 VDWADV------RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR-------KKTSGNKITGIQGRIS 451 (465)
Q Consensus 385 ~~~~~~------~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~-------~~~~~~~It~~~f~p~ 451 (465)
+..... -..++.+.|. +|+..+..-.++.|.+.|..+++.. ..+++.+- .........|+++.|.
T Consensus 168 ~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~-~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~ 245 (268)
T 3nok_A 168 VGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVV-GVIDASALTRAVAGQVTNPEAVLNGIAVEPG 245 (268)
T ss_dssp EEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEE-EEEECHHHHHHHTTTCCCTTCCEEEEEECTT
T ss_pred EEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEE-EEEECCCCcccccccccCcCCceEEEEEcCC
Confidence 653221 1245677877 7754444435789999999888763 34554421 1123457899999986
Q ss_pred CC
Q 012367 452 KN 453 (465)
Q Consensus 452 gs 453 (465)
+.
T Consensus 246 ~~ 247 (268)
T 3nok_A 246 SG 247 (268)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 225
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.17 E-value=4.5e-05 Score=76.42 Aligned_cols=196 Identities=12% Similarity=0.001 Sum_probs=113.4
Q ss_pred EEEEECCCCCEEEEEeC--CCcEEEEecCCceeeeeeecCCCCcc-cccCCCeEEeccCCCCceeEecC-CceeeecCCc
Q 012367 226 WTLKFSPDGRYLASGGE--DGVVRIWHVTSVAASCKSFTDDGGFG-SNAKEGKIKFGKKKSSHVPVVIP-DEVFQIEESP 301 (465)
Q Consensus 226 ~~l~fspdg~~LaSgs~--Dg~V~iWd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 301 (465)
..+.|+|||++|+.+.. ++.|.+.|+.+.+............. .......+.+... .....+... ..+.....
T Consensus 180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~d-G~~~~V~~~~~~v~~~~~-- 256 (426)
T 3c75_H 180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRD-GSLARVDFADGETKVTNT-- 256 (426)
T ss_dssp GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETT-SSEEEEECCTTCCEEEEC--
T ss_pred ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCC-CCEEEEECCCCcEEEEee--
Confidence 46899999999998874 57899999999877655443211000 0000000111111 111111110 01100000
Q ss_pred ceeeeccccce-EEEEecCC-CEEEEEeCCCeEEEEeCCCCeEe--EEec-----------CCCceEEEEEccCCCCEEE
Q 012367 302 LQELHGHKGDV-LDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCL--NVFD-----------HHNYVTCVQFNPIDDNYFI 366 (465)
Q Consensus 302 ~~~~~gh~~~V-~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l--~~~~-----------h~~~V~~i~fsp~~~~~l~ 366 (465)
..+.-...++ ..+.+.++ +.++..+..++|.+.|+..+... ..+. .......++++| +++.++
T Consensus 257 -~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~-dg~rly 334 (426)
T 3c75_H 257 -EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR-QSDRIY 334 (426)
T ss_dssp -CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG-GGTEEE
T ss_pred -eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC-CCCEEE
Confidence 0011011111 12345665 35555567889999998755421 1111 011122368999 766555
Q ss_pred EEeC----------CCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCC-EEEEEE-cCCcEEEEEecCCcee
Q 012367 367 SGSI----------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-GFIVGS-ITGTCHFYKASGNDLK 426 (465)
Q Consensus 367 sgs~----------Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~-~l~sgs-~dG~v~iwd~~~~~~~ 426 (465)
.... ++.|.++|..+.+++...........+.|+|||+ .+++.. .++.|.++|+.+.+..
T Consensus 335 Va~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 335 LLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp EEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred EEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence 5432 3579999999999887665556799999999999 888888 4899999999988764
No 226
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.10 E-value=0.00019 Score=70.73 Aligned_cols=106 Identities=9% Similarity=-0.034 Sum_probs=77.6
Q ss_pred EEEecCCC-EEEEEe----------CCCeEEEEeCCCCeEeEEecCC--------CceEEEEEccCCCCEEEEEeC--CC
Q 012367 314 DLAWSNSN-YLLSCS----------MDKTVRMWQVGCNQCLNVFDHH--------NYVTCVQFNPIDDNYFISGSI--DG 372 (465)
Q Consensus 314 ~l~~s~~~-~l~s~s----------~DgtV~lWD~~~~~~l~~~~h~--------~~V~~i~fsp~~~~~l~sgs~--Dg 372 (465)
.++++|++ +++.+. .+++|.+||+.+.+.+..+... .....++|+| ++++|+.++. ++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGP 148 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCC
Confidence 78999986 555543 3688999999998887776432 3456899999 9999998874 47
Q ss_pred cEEEEeCCCCeEEec-ccCCCCeEEEEEeeCC-CEEEEEEcCCcEEEEEecCCce
Q 012367 373 KVRIWGVCEKRVVDW-ADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 373 ~I~iwd~~~~~~~~~-~~~~~~V~sv~~spdg-~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
.|.++| .+++++.. ...... +.+.|++ +.+++.+.||.+.+++. +++.
T Consensus 149 ~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~ 198 (373)
T 2mad_H 149 AVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGA 198 (373)
T ss_pred eEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcE
Confidence 899999 99988765 554433 4455655 35566677888888888 5544
No 227
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.08 E-value=0.0012 Score=60.44 Aligned_cols=184 Identities=11% Similarity=0.047 Sum_probs=119.2
Q ss_pred cCC--CcEEEEEECCCCCEEEEEeCCC--cEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCcee
Q 012367 220 AHK--GCIWTLKFSPDGRYLASGGEDG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (465)
Q Consensus 220 ~H~--~~I~~l~fspdg~~LaSgs~Dg--~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (465)
.|. .-...+.|++ +.++.+.+.+| .|+++|+.+++.......+.
T Consensus 16 phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~------------------------------- 63 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP------------------------------- 63 (243)
T ss_dssp ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-------------------------------
T ss_pred CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-------------------------------
Confidence 454 3466899986 66777777764 89999999876644322110
Q ss_pred eecCCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEE
Q 012367 296 QIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVR 375 (465)
Q Consensus 296 ~~~~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~ 375 (465)
+ -.-..++...+...+..-.++.+.+||..+.+.+..+.....-+.++. ++..|+.+..++.|.
T Consensus 64 ------------~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt~---dg~~L~vSdgs~~l~ 127 (243)
T 3mbr_X 64 ------------P-YFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALTS---DDSHLYMSDGTAVIR 127 (243)
T ss_dssp ------------T-CCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEEE---CSSCEEEECSSSEEE
T ss_pred ------------C-cceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEee---CCCEEEEECCCCeEE
Confidence 0 001123444444555566789999999999999999976554456654 455555555688999
Q ss_pred EEeCCCCeEEecccCC------CCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcc-------cccCCc
Q 012367 376 IWGVCEKRVVDWADVR------DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK-------KTSGNK 442 (465)
Q Consensus 376 iwd~~~~~~~~~~~~~------~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~-------~~~~~~ 442 (465)
++|..+.+++...... ..++.+.|. +|+..+..-.+..|.+.|..+++.. ..+.+.+-. ......
T Consensus 128 ~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~-~~idl~~l~~~~~~~~~~~~~v 205 (243)
T 3mbr_X 128 KLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVV-AWIDLQALVPDADALTDSTNDV 205 (243)
T ss_dssp EECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEE-EEEECGGGSTTTTSCCCTTSSC
T ss_pred EEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEE-EEEECCcCccccccccCCcCCc
Confidence 9999998766532221 345667766 6665544445789999999988763 345544311 123457
Q ss_pred eeeEEEeecCC
Q 012367 443 ITGIQGRISKN 453 (465)
Q Consensus 443 It~~~f~p~gs 453 (465)
..|+++.|.+.
T Consensus 206 lNGIA~d~~~~ 216 (243)
T 3mbr_X 206 LNGIAFDAEHD 216 (243)
T ss_dssp EEEEEEETTTT
T ss_pred eEEEEEcCCCC
Confidence 89999998653
No 228
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.02 E-value=0.00016 Score=77.31 Aligned_cols=159 Identities=13% Similarity=0.132 Sum_probs=101.5
Q ss_pred CCCcEEEEEECCCCCEEEEEeC----CCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367 221 HKGCIWTLKFSPDGRYLASGGE----DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaSgs~----Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (465)
|...+..+.|+|||++|+.... +..|.+||+.+...
T Consensus 232 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~---------------------------------------- 271 (693)
T 3iuj_A 232 QHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA---------------------------------------- 271 (693)
T ss_dssp GCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC----------------------------------------
T ss_pred CCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC----------------------------------------
Confidence 5556789999999998754432 24788888865311
Q ss_pred ecCCcceeeeccccceEEEEecCCCE-EEEEeCC---CeEEEEeCCCCeE---eEEecCCCceEEEEEccCCCCEEEEEe
Q 012367 297 IEESPLQELHGHKGDVLDLAWSNSNY-LLSCSMD---KTVRMWQVGCNQC---LNVFDHHNYVTCVQFNPIDDNYFISGS 369 (465)
Q Consensus 297 ~~~~~~~~~~gh~~~V~~l~~s~~~~-l~s~s~D---gtV~lWD~~~~~~---l~~~~h~~~V~~i~fsp~~~~~l~sgs 369 (465)
....+..+...+.....++++. ++.+..+ +.|.++|+.++.. .....|...+. .|+| ++++|+...
T Consensus 272 ----~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~-~g~~lv~~~ 344 (693)
T 3iuj_A 272 ----PLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHS-GSGYLFAEY 344 (693)
T ss_dssp ----CCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEE-ETTEEEEEE
T ss_pred ----ceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEE-ECCEEEEEE
Confidence 1222333444444432223343 4444433 6799999987654 33345655555 8888 777776665
Q ss_pred CCC---cEEEEeCCCCeEEecc-cCCCCeEEEEEeeCCCEEEEEEcC----CcEEEEEecCCcee
Q 012367 370 IDG---KVRIWGVCEKRVVDWA-DVRDVISAICYIPDGKGFIVGSIT----GTCHFYKASGNDLK 426 (465)
Q Consensus 370 ~Dg---~I~iwd~~~~~~~~~~-~~~~~V~sv~~spdg~~l~sgs~d----G~v~iwd~~~~~~~ 426 (465)
.++ .|++||+.++....+. .....+..+.++|+++.++....+ +++..||+.+++..
T Consensus 345 ~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 345 MVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 544 6899999876554432 344567788888998877766555 88999998776543
No 229
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.02 E-value=0.00027 Score=69.45 Aligned_cols=104 Identities=11% Similarity=-0.008 Sum_probs=68.8
Q ss_pred CEEEEEeCCCeEEEEeCCCCe--EeEEecC-----------CCceEEEEEccCCCCEEEEEeC---------CCcEEEEe
Q 012367 321 NYLLSCSMDKTVRMWQVGCNQ--CLNVFDH-----------HNYVTCVQFNPIDDNYFISGSI---------DGKVRIWG 378 (465)
Q Consensus 321 ~~l~s~s~DgtV~lWD~~~~~--~l~~~~h-----------~~~V~~i~fsp~~~~~l~sgs~---------Dg~I~iwd 378 (465)
+.++..+. +.|.+.|+.+.. .+..+.. ......++|+| +++.++.+.. ++.+.++|
T Consensus 223 ~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~-dg~~lyV~~~~~~~~~~~~~~~~~ViD 300 (368)
T 1mda_H 223 GMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIMILTVEHSRSCLAAAENTSSVT 300 (368)
T ss_dssp TEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEEEEEEECSSCTTSCEEEEEEEE
T ss_pred CEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcC-CCCEEEEEeccccCcccccCCCEEEEE
Confidence 34444444 778888876432 2222211 11112268999 7776665432 23566999
Q ss_pred CCCCeEEecccCCCCeEEEEEeeCCCE-EEEEE-cCCcEEEEEecCCcee
Q 012367 379 VCEKRVVDWADVRDVISAICYIPDGKG-FIVGS-ITGTCHFYKASGNDLK 426 (465)
Q Consensus 379 ~~~~~~~~~~~~~~~V~sv~~spdg~~-l~sgs-~dG~v~iwd~~~~~~~ 426 (465)
+.+.+++...........++|+|||+. +++.. .++.|.++|+.+.+..
T Consensus 301 ~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 301 ASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp SSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred CCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence 999998876655557999999999985 55555 4899999999987664
No 230
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.99 E-value=0.00015 Score=72.54 Aligned_cols=174 Identities=10% Similarity=0.034 Sum_probs=112.4
Q ss_pred cccchhhhccCCCcEEEEEECCCCCEEEEEe----------CCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEecc
Q 012367 211 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGG----------EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGK 280 (465)
Q Consensus 211 ~~~~~~~l~~H~~~I~~l~fspdg~~LaSgs----------~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (465)
......++.--..+ .|+++|||++|+.+. .++.|.++|..+.+..........
T Consensus 108 t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~--------------- 170 (426)
T 3c75_H 108 TGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDA--------------- 170 (426)
T ss_dssp TTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC---------------
T ss_pred CCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCc---------------
Confidence 33333444333345 899999999887775 467899999988655432211100
Q ss_pred CCCCceeEecCCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeC--CCeEEEEeCCCCeEeEEecCCCceEEEEE
Q 012367 281 KKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM--DKTVRMWQVGCNQCLNVFDHHNYVTCVQF 357 (465)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~--DgtV~lWD~~~~~~l~~~~h~~~V~~i~f 357 (465)
+ .+ ........+.++|++ +|+.+.. +++|.+.|+.+++.+..+.-... ...
T Consensus 171 -------------------~---r~-~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~ 224 (426)
T 3c75_H 171 -------------------P---RF-LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHI 224 (426)
T ss_dssp -------------------C---CC-CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEE
T ss_pred -------------------c---cc-ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eee
Confidence 0 00 001123357889986 6666653 58999999999999988865432 334
Q ss_pred ccCCCCEEEEEeCCCcEEEEeCCCCeEEec----cc-CCC-CeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceee
Q 012367 358 NPIDDNYFISGSIDGKVRIWGVCEKRVVDW----AD-VRD-VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL 427 (465)
Q Consensus 358 sp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~----~~-~~~-~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~ 427 (465)
.|...+.+++.+.||++.+.+..++++... .. ... ....+.|.+++..++..+..|.+.+.|+.+.....
T Consensus 225 ~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v 300 (426)
T 3c75_H 225 FPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATF 300 (426)
T ss_dssp EEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEE
T ss_pred ccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEE
Confidence 453446777788899988888866655421 11 111 12346789999988888889999999998766543
No 231
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.97 E-value=0.0004 Score=74.25 Aligned_cols=106 Identities=14% Similarity=0.166 Sum_probs=79.0
Q ss_pred EEEEEeCCCeEEEEeCCCCeEeEEecCCC--ce--------------------------------------EEEEEccCC
Q 012367 322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHN--YV--------------------------------------TCVQFNPID 361 (465)
Q Consensus 322 ~l~s~s~DgtV~lWD~~~~~~l~~~~h~~--~V--------------------------------------~~i~fsp~~ 361 (465)
.++.++.+|.++++|..+|+.+....... .. ..++|+| +
T Consensus 321 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp-~ 399 (689)
T 1yiq_A 321 VLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP-D 399 (689)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET-T
T ss_pred EEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC-C
Confidence 68889999999999999999875442111 11 1267888 6
Q ss_pred CCEEEEEeC---------------------------------------------CCcEEEEeCCCCeEEecccCCCCeEE
Q 012367 362 DNYFISGSI---------------------------------------------DGKVRIWGVCEKRVVDWADVRDVISA 396 (465)
Q Consensus 362 ~~~l~sgs~---------------------------------------------Dg~I~iwd~~~~~~~~~~~~~~~V~s 396 (465)
..++++... +|.|+.||+.+++++....+...+..
T Consensus 400 ~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~ 479 (689)
T 1yiq_A 400 TGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNG 479 (689)
T ss_dssp TTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCC
T ss_pred CCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccC
Confidence 666665522 37799999999998765555555555
Q ss_pred EEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367 397 ICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 428 (465)
Q Consensus 397 v~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~ 428 (465)
..+...+..+++|+.||.++.||..+++....
T Consensus 480 g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~ 511 (689)
T 1yiq_A 480 GTLSTAGNLVFEGSADGRVIAYAADTGEKLWE 511 (689)
T ss_dssp CEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ccceECCCEEEEECCCCcEEEEECCCCcccee
Confidence 56777888999999999999999999987543
No 232
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.90 E-value=0.00038 Score=66.72 Aligned_cols=172 Identities=11% Similarity=0.049 Sum_probs=105.1
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCccee
Q 012367 225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 304 (465)
Q Consensus 225 I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (465)
-.+++|+++|+++.++..++.|..|+..+................. . .......
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----------~----------------~g~~~~~ 74 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAF----------C----------------ENSTDAE 74 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHH----------H----------------TTCCCGG
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccc----------c----------------ccccchh
Confidence 4578899999878888889999999876543211100000000000 0 0000000
Q ss_pred eeccccceEEEEecC-CCEEEEEeCCCeEEEEeCCCCeEeEEec------CCCceEEEEEccCCCCEEEEEeC-------
Q 012367 305 LHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNVFD------HHNYVTCVQFNPIDDNYFISGSI------- 370 (465)
Q Consensus 305 ~~gh~~~V~~l~~s~-~~~l~s~s~DgtV~lWD~~~~~~l~~~~------h~~~V~~i~fsp~~~~~l~sgs~------- 370 (465)
.......+..+++.+ ++.|+.+...+.|..+|..++.. ..+. .......+++.|.+++++++-..
T Consensus 75 ~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~ 153 (322)
T 2fp8_A 75 KRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRG 153 (322)
T ss_dssp GHHHHCCEEEEEEETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTC
T ss_pred ccccCCCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccc
Confidence 001123577899997 77777776666688999876542 2221 12357889998745666665432
Q ss_pred ----------CCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEE-EcCCcEEEEEecCC
Q 012367 371 ----------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGTCHFYKASGN 423 (465)
Q Consensus 371 ----------Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sg-s~dG~v~iwd~~~~ 423 (465)
++.|..||..++++......-.....++++|+|+.|+++ +.++.|..|++.+.
T Consensus 154 ~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~ 217 (322)
T 2fp8_A 154 VQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGP 217 (322)
T ss_dssp HHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSST
T ss_pred cceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 367888998877665443333456789999999977666 45689999998853
No 233
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.89 E-value=0.00091 Score=71.29 Aligned_cols=107 Identities=12% Similarity=0.163 Sum_probs=82.5
Q ss_pred CEEEEEeCCCeEEEEeCCCCeEeEEecCC--Cc----------e------------------------EEEEEccCCCCE
Q 012367 321 NYLLSCSMDKTVRMWQVGCNQCLNVFDHH--NY----------V------------------------TCVQFNPIDDNY 364 (465)
Q Consensus 321 ~~l~s~s~DgtV~lWD~~~~~~l~~~~h~--~~----------V------------------------~~i~fsp~~~~~ 364 (465)
+.++.++.+|.|.++|..+|+.+..+... .. + ..++|+| +..+
T Consensus 328 ~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-~~~~ 406 (677)
T 1kb0_A 328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-QTGL 406 (677)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-TTTE
T ss_pred eEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-CCCE
Confidence 36888999999999999999988776421 11 1 1467888 6667
Q ss_pred EEEEeC-------------------------------------------CCcEEEEeCCCCeEEecccCCCCeEEEEEee
Q 012367 365 FISGSI-------------------------------------------DGKVRIWGVCEKRVVDWADVRDVISAICYIP 401 (465)
Q Consensus 365 l~sgs~-------------------------------------------Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~sp 401 (465)
+++... .+.|..||+.+++++....+...+....+.+
T Consensus 407 ~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~ 486 (677)
T 1kb0_A 407 VYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTT 486 (677)
T ss_dssp EEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE
T ss_pred EEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEe
Confidence 766543 2789999999999876555655666667788
Q ss_pred CCCEEEEEEcCCcEEEEEecCCceeee
Q 012367 402 DGKGFIVGSITGTCHFYKASGNDLKLE 428 (465)
Q Consensus 402 dg~~l~sgs~dG~v~iwd~~~~~~~~~ 428 (465)
++..+++++.||.+++||+.+++....
T Consensus 487 ~g~~v~~g~~dg~l~a~D~~tG~~lw~ 513 (677)
T 1kb0_A 487 AGNVVFQGTADGRLVAYHAATGEKLWE 513 (677)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCceeee
Confidence 888999999999999999999887543
No 234
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.74 E-value=0.019 Score=52.89 Aligned_cols=214 Identities=9% Similarity=0.017 Sum_probs=115.9
Q ss_pred cEEEEEECCCCCEEE-EEeCCCcEEEEecCCceeeeeeecCC-CCcc-ccc-CCCeEEeccCCCCceeEecCCceeeecC
Q 012367 224 CIWTLKFSPDGRYLA-SGGEDGVVRIWHVTSVAASCKSFTDD-GGFG-SNA-KEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (465)
Q Consensus 224 ~I~~l~fspdg~~La-Sgs~Dg~V~iWd~~~~~~~~~~~~~~-~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (465)
.+.+++|++++..|+ +-...+.|.+++.............. .... ... ..+.+.+........... ....
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~------~~~g 110 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVA------KMDG 110 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEE------ETTS
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEE------EcCC
Confidence 467999999766554 44567899999987653322111100 0000 001 112222222211111111 1112
Q ss_pred Ccceeeec-cccceEEEEecC-CCEEEEEeC---CCeEEEEeCCCCeEeEEe--cCCCceEEEEEccCCCC-EEEEEeCC
Q 012367 300 SPLQELHG-HKGDVLDLAWSN-SNYLLSCSM---DKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDN-YFISGSID 371 (465)
Q Consensus 300 ~~~~~~~g-h~~~V~~l~~s~-~~~l~s~s~---DgtV~lWD~~~~~~l~~~--~h~~~V~~i~fsp~~~~-~l~sgs~D 371 (465)
.....+.. .......++++| ++.|+.+.. .+.|..+++.. .....+ ..-.....++++| ++. ++++-...
T Consensus 111 ~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~-~~~~lyv~d~~~ 188 (267)
T 1npe_A 111 TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDA-FSSQLCWVDAGT 188 (267)
T ss_dssp CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEET-TTTEEEEEETTT
T ss_pred CCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcC-CCCEEEEEECCC
Confidence 22222221 124568899998 466555543 36888888763 333333 2234678999999 655 44555566
Q ss_pred CcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEee
Q 012367 372 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRI 450 (465)
Q Consensus 372 g~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p 450 (465)
+.|.++|..+.....+.........++.. +..|+++. ..+.|..+|..+++.. ..+.... .....++.+.|
T Consensus 189 ~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~-~~i~~g~-----~~~p~gi~~~~ 260 (267)
T 1npe_A 189 HRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEM-DTFHPHK-----QTRLYGITIAL 260 (267)
T ss_dssp TEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEE-EEECCSS-----CCCCCCEEEEC
T ss_pred CEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCce-EEEcccc-----ccccceeeecC
Confidence 89999999865544433333445666653 55666655 4689999999877653 2332211 12366788887
Q ss_pred cCC
Q 012367 451 SKN 453 (465)
Q Consensus 451 ~gs 453 (465)
++-
T Consensus 261 ~~~ 263 (267)
T 1npe_A 261 SQC 263 (267)
T ss_dssp SCC
T ss_pred ccC
Confidence 754
No 235
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.64 E-value=0.00036 Score=72.06 Aligned_cols=92 Identities=10% Similarity=0.046 Sum_probs=70.4
Q ss_pred CeEEEEeCCC--CeE-eEEecCCCceEEEEEccCCCCEEEEEe-CCCcEEEEeCCCCe------------EEecccCCCC
Q 012367 330 KTVRMWQVGC--NQC-LNVFDHHNYVTCVQFNPIDDNYFISGS-IDGKVRIWGVCEKR------------VVDWADVRDV 393 (465)
Q Consensus 330 gtV~lWD~~~--~~~-l~~~~h~~~V~~i~fsp~~~~~l~sgs-~Dg~I~iwd~~~~~------------~~~~~~~~~~ 393 (465)
+.|.+.|..+ +.. +..+.-.....++.++| |++++++++ .+.+|.++|+.+.+ ++........
T Consensus 254 ~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~g 332 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG 332 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEEEEESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSC
T ss_pred CcEEEEeCcccCCceeEEEEecCCCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCC
Confidence 5599999998 555 56666556678899999 888776655 57899999998653 4444455567
Q ss_pred eEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367 394 ISAICYIPDGKGFIVGSITGTCHFYKASG 422 (465)
Q Consensus 394 V~sv~~spdg~~l~sgs~dG~v~iwd~~~ 422 (465)
...++|+|+|...++.-.|+.|..||+..
T Consensus 333 P~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 333 PLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred cceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 89999999994344455699999999986
No 236
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.62 E-value=0.0013 Score=70.06 Aligned_cols=92 Identities=15% Similarity=0.210 Sum_probs=68.8
Q ss_pred CeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecc--cCCCCeEEEEEeeCCCEEE
Q 012367 330 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA--DVRDVISAICYIPDGKGFI 407 (465)
Q Consensus 330 gtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~--~~~~~V~sv~~spdg~~l~ 407 (465)
+.|..||+.+++.+..+.+...+....+.. .+..++.++.|+.+++||..+++++... ++.....-+.|.++|+.++
T Consensus 457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v 535 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV 535 (677)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred cEEEEEeCCCCcEEeecCCCCCCcCcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEE
Confidence 789999999999999988776666666666 7778888999999999999999988633 3333345567788997554
Q ss_pred EE-Ec----------------CCcEEEEEecC
Q 012367 408 VG-SI----------------TGTCHFYKASG 422 (465)
Q Consensus 408 sg-s~----------------dG~v~iwd~~~ 422 (465)
+. +. .+.+..|.+..
T Consensus 536 ~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 536 SVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp EEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred EEeccCCccccccccccccCCCCeEEEEeccc
Confidence 43 22 36777777763
No 237
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.61 E-value=0.0019 Score=60.18 Aligned_cols=114 Identities=10% Similarity=0.026 Sum_probs=81.7
Q ss_pred ceEEEEecCCCEEEEEeC---CCeEEEEeCCCCeEeEEecCCC--ceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 012367 311 DVLDLAWSNSNYLLSCSM---DKTVRMWQVGCNQCLNVFDHHN--YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 385 (465)
Q Consensus 311 ~V~~l~~s~~~~l~s~s~---DgtV~lWD~~~~~~l~~~~h~~--~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~ 385 (465)
....+.|++++.|+.++. ++.|++.|+.+++.+..+.... ....+++. .+..+++.-.++.+.++|..+.+++
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 367899999776555543 5899999999999998875322 33455554 3455566667899999999998887
Q ss_pred ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceee
Q 012367 386 DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL 427 (465)
Q Consensus 386 ~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~ 427 (465)
...... .-....+++||+.++++..++.+.++|..+.+...
T Consensus 100 ~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~ 140 (266)
T 2iwa_A 100 KNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIK 140 (266)
T ss_dssp EEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEE
T ss_pred EEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEE
Confidence 644332 11224466789888888888999999998876543
No 238
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.57 E-value=0.023 Score=53.69 Aligned_cols=150 Identities=14% Similarity=0.114 Sum_probs=93.3
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcc
Q 012367 223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 302 (465)
Q Consensus 223 ~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (465)
.....++|+++|+++++-..++.|..||.......
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~--------------------------------------------- 66 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQI--------------------------------------------- 66 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEE---------------------------------------------
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEE---------------------------------------------
Confidence 45778999999997777778889988886642110
Q ss_pred eeeeccccceEEEEecCCCEEEEEe--CCC-eEEEEeCCCCeEeEEec--CCCceEEEEEccCCCCEEEEEeCCCcEEEE
Q 012367 303 QELHGHKGDVLDLAWSNSNYLLSCS--MDK-TVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377 (465)
Q Consensus 303 ~~~~gh~~~V~~l~~s~~~~l~s~s--~Dg-tV~lWD~~~~~~l~~~~--h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iw 377 (465)
.+ .....+..+++.+++.|+.+. .++ .|..+|..+++...... .......++..+ ++..+++-..++.|.++
T Consensus 67 -~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~ 143 (306)
T 2p4o_A 67 -HA-TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLI 143 (306)
T ss_dssp -EE-ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEE
T ss_pred -EE-eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEE
Confidence 00 011347788999876444443 223 47777877777544332 223345555555 55555655568899999
Q ss_pred eCCCC--eEEec---------ccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecC
Q 012367 378 GVCEK--RVVDW---------ADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASG 422 (465)
Q Consensus 378 d~~~~--~~~~~---------~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~ 422 (465)
|..++ ++... ...-...+.+ +|+++.|+++. ..+.|..|++..
T Consensus 144 d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~ 198 (306)
T 2p4o_A 144 DVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDS 198 (306)
T ss_dssp ETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCT
T ss_pred eCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCC
Confidence 98764 23211 0111234555 88988776655 478899999875
No 239
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.56 E-value=0.064 Score=57.92 Aligned_cols=198 Identities=12% Similarity=0.105 Sum_probs=116.3
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEe-cCCceeeec--
Q 012367 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV-IPDEVFQIE-- 298 (465)
Q Consensus 222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-- 298 (465)
...|++|...++|.+.+ |+.+| |.+|+..+............. ..........+........-+. ....+..+.
T Consensus 262 ~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~-~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~ 338 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWI-GTFND-LNIYHEGTDSFASYSSNPVEN-GSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPI 338 (795)
T ss_dssp CSBEEEEEECTTSCEEE-EESSC-EEEEETTTTEEEEECCCTTST-TSCSSSCEEEEEECTTSCEEEEESSSCEEEECGG
T ss_pred CCeEEEEEEcCCCCEEE-EeCCh-hheEcCCCCeEEEEecCCCCC-CCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCC
Confidence 45699999999997554 44455 888998765543221111100 0000001111111111111111 112222221
Q ss_pred CCcceeeec-------cccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec---------CCCceEEEEEccCCC
Q 012367 299 ESPLQELHG-------HKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---------HHNYVTCVQFNPIDD 362 (465)
Q Consensus 299 ~~~~~~~~g-------h~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~---------h~~~V~~i~fsp~~~ 362 (465)
......+.. ....|.++...+++.|..|+.++-|..||..++....... ....|.+++..+ ++
T Consensus 339 ~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g 417 (795)
T 4a2l_A 339 RNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KK 417 (795)
T ss_dssp GGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TT
T ss_pred cccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CC
Confidence 111222211 2356899998888888889988889999998776544321 135799999887 77
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEeccc-----CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 363 NYFISGSIDGKVRIWGVCEKRVVDWAD-----VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 363 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~-----~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
+.|..|..++-|.+||..+++...+.. ....|.++...++|.. .+|+.+| +.+|+..+++.
T Consensus 418 ~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-wigt~~G-l~~~~~~~~~~ 483 (795)
T 4a2l_A 418 SLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNL-WLGTLSA-LVRFNPEQRSF 483 (795)
T ss_dssp TEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCE-EEEESSC-EEEEETTTTEE
T ss_pred CEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCE-EEEecCc-eeEEeCCCCeE
Confidence 746667777789999999887665432 3457899998888865 4455554 77898877654
No 240
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.56 E-value=0.013 Score=57.05 Aligned_cols=102 Identities=9% Similarity=0.092 Sum_probs=75.2
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEeccc-C-CCCeEEE
Q 012367 320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-V-RDVISAI 397 (465)
Q Consensus 320 ~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~-~~~V~sv 397 (465)
++.++.++.++.|..+|..+++.+....... ...+.. ++..++.++.++.|..+|..+++...... . ...+.+.
T Consensus 239 ~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~---~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~ 314 (376)
T 3q7m_A 239 NGVVFALAYNGNLTALDLRSGQIMWKRELGS-VNDFIV---DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSP 314 (376)
T ss_dssp TTEEEEECTTSCEEEEETTTCCEEEEECCCC-EEEEEE---ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCC
T ss_pred CCEEEEEecCcEEEEEECCCCcEEeeccCCC-CCCceE---ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCC
Confidence 4678888899999999999999887775433 344444 45677778889999999999998764332 1 2223333
Q ss_pred EEeeCCCEEEEEEcCCcEEEEEecCCceee
Q 012367 398 CYIPDGKGFIVGSITGTCHFYKASGNDLKL 427 (465)
Q Consensus 398 ~~spdg~~l~sgs~dG~v~iwd~~~~~~~~ 427 (465)
.. .+..|++++.+|.++++|..++++..
T Consensus 315 ~~--~~~~l~v~~~~g~l~~~d~~tG~~~~ 342 (376)
T 3q7m_A 315 VL--YNGNLVVGDSEGYLHWINVEDGRFVA 342 (376)
T ss_dssp EE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EE--ECCEEEEEeCCCeEEEEECCCCcEEE
Confidence 33 35689999999999999999887654
No 241
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.56 E-value=0.0086 Score=58.24 Aligned_cols=185 Identities=7% Similarity=0.023 Sum_probs=105.5
Q ss_pred CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCccc-ccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccc
Q 012367 233 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS-NAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGD 311 (465)
Q Consensus 233 dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~ 311 (465)
++..++.++.++.|..+|..+++.............. ....+.+.+... .......... ..+.+...... ..
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~-~g~l~~~d~~-----tG~~~W~~~~~-~~ 174 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTS-NGQLQALNEA-----DGAVKWTVNLD-MP 174 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECT-TSEEEEEETT-----TCCEEEEEECC-C-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcC-CCeEEEEECC-----CCcEEEEEeCC-CC
Confidence 3557888899999999999988876655443221111 111122222211 1111111110 01111111111 11
Q ss_pred e------EEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCce-----EE---EEEcc-CCCCEEEEEeCCCcEEE
Q 012367 312 V------LDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYV-----TC---VQFNP-IDDNYFISGSIDGKVRI 376 (465)
Q Consensus 312 V------~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V-----~~---i~fsp-~~~~~l~sgs~Dg~I~i 376 (465)
+ ...... ++.++.++.++.|..+|..+++.+..+....+. .. +.-.| ..+..++.++.++.|..
T Consensus 175 ~~~~~~~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~ 253 (376)
T 3q7m_A 175 SLSLRGESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTA 253 (376)
T ss_dssp ----CCCCCCEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEE
T ss_pred ceeecCCCCcEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEE
Confidence 1 111111 467888889999999999999988877533210 00 11111 03467777888999999
Q ss_pred EeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367 377 WGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 428 (465)
Q Consensus 377 wd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~ 428 (465)
+|..+++.+..... .....+.. ++..+++++.+|.+..+|..+++....
T Consensus 254 ~d~~tG~~~w~~~~-~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~ 302 (376)
T 3q7m_A 254 LDLRSGQIMWKREL-GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWT 302 (376)
T ss_dssp EETTTCCEEEEECC-CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEE
T ss_pred EECCCCcEEeeccC-CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEe
Confidence 99999887643332 23444433 467888999999999999998876543
No 242
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.55 E-value=0.0017 Score=61.72 Aligned_cols=184 Identities=17% Similarity=0.124 Sum_probs=109.7
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccc--cCCCeEEeccCCCCceeEecCCceeeec-
Q 012367 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN--AKEGKIKFGKKKSSHVPVVIPDEVFQIE- 298 (465)
Q Consensus 222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 298 (465)
...+.++...++|. |..|+.++.|..+|.. +................ ...+.+.++. ..++.+.
T Consensus 136 ~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t-----------~~l~~~d~ 202 (330)
T 3hxj_A 136 KAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS-----------DKVYAINP 202 (330)
T ss_dssp SCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES-----------SSEEEECT
T ss_pred CceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe-----------CEEEEECC
Confidence 33456667777776 5567788999999988 55444333222111111 1122222222 2222222
Q ss_pred -CCcceeeeccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecC-CCceEEEEEccCCCCEEEEEeCCCcEEE
Q 012367 299 -ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDH-HNYVTCVQFNPIDDNYFISGSIDGKVRI 376 (465)
Q Consensus 299 -~~~~~~~~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h-~~~V~~i~fsp~~~~~l~sgs~Dg~I~i 376 (465)
...+..+......+.++...+++.|..++.++.|..+|. ++..+..+.. ...+..+.+.+ ++ .+..++.++.|..
T Consensus 203 ~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~ggl~~ 279 (330)
T 3hxj_A 203 DGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGN-TD-TIYFGSYDGHLYA 279 (330)
T ss_dssp TSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECT-TS-CEEEECTTCEEEE
T ss_pred CCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcC-CC-eEEEecCCCCEEE
Confidence 122223333445677888888888888888888999985 5666666643 33344555654 44 5666777888999
Q ss_pred EeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367 377 WGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN 423 (465)
Q Consensus 377 wd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~ 423 (465)
+|. +++... .......+.++...++|. |.+|+.+|.+++......
T Consensus 280 ~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 280 INP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp ECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred ECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence 996 555443 333455677777777775 677899999998876543
No 243
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.53 E-value=0.0018 Score=60.09 Aligned_cols=112 Identities=10% Similarity=0.046 Sum_probs=84.2
Q ss_pred ceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceE--EEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecc
Q 012367 311 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVT--CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA 388 (465)
Q Consensus 311 ~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~--~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~ 388 (465)
....|.|+.+.++.+.+.+|.|+++|+.+++.+..+ -..... .+++. .+++++....++.+.+||..+.+++...
T Consensus 56 ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 56 FTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp CEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred ccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence 457888886667788889999999999999988887 444433 35554 4566666777899999999999888744
Q ss_pred cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceee
Q 012367 389 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL 427 (465)
Q Consensus 389 ~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~ 427 (465)
.....-..++ +|++.|+++..++.|+++|..+.+..-
T Consensus 133 ~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~ 169 (268)
T 3nok_A 133 RYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVG 169 (268)
T ss_dssp ECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEE
T ss_pred eCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEE
Confidence 4433334444 678888888889999999998876643
No 244
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.52 E-value=0.0035 Score=57.39 Aligned_cols=116 Identities=8% Similarity=-0.097 Sum_probs=83.6
Q ss_pred cceEEEEecCCCEEEEEeCCC--eEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEec
Q 012367 310 GDVLDLAWSNSNYLLSCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW 387 (465)
Q Consensus 310 ~~V~~l~~s~~~~l~s~s~Dg--tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~ 387 (465)
.....+.|+++.++.+.+.+| .|+.+|+.+++.+....-..........+.++++++....++.+.+||..+.+++..
T Consensus 21 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~t 100 (243)
T 3mbr_X 21 AFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRAR 100 (243)
T ss_dssp CCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred cccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEE
Confidence 456789998855666777754 899999999999998865444433333332455666666789999999999988875
Q ss_pred ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceee
Q 012367 388 ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL 427 (465)
Q Consensus 388 ~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~ 427 (465)
......-..+ .++++.|+++..++.|.++|..+.+..-
T Consensus 101 i~~~~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~ 138 (243)
T 3mbr_X 101 FRYPGEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVG 138 (243)
T ss_dssp EECSSCCCEE--EECSSCEEEECSSSEEEEECTTTCCEEE
T ss_pred EeCCCCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEE
Confidence 4444333444 4678888888889999999998876643
No 245
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.49 E-value=0.0015 Score=67.49 Aligned_cols=117 Identities=14% Similarity=0.094 Sum_probs=83.2
Q ss_pred ceEEEEecCCC--EEEEEeCCCeEEEEeCCCCe------------EeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEE
Q 012367 311 DVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQ------------CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI 376 (465)
Q Consensus 311 ~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~~------------~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~i 376 (465)
...++.++|+| .++++..+.+|.++|+.+.+ ......-......++|+| +++..++.-.|+.|.+
T Consensus 278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~-dG~aY~t~~ldsqV~k 356 (595)
T 1fwx_A 278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDG-RGNAYTSLFLDSQVVK 356 (595)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECT-TSEEEEEETTTTEEEE
T ss_pred CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECC-CCeEEEEEecCCcEEE
Confidence 45678999987 45566678999999998653 344555666789999999 8866667778999999
Q ss_pred EeCCC----------CeEEecccCCCCe------EEEEEeeCCCEEEEEEc--CCcE-----------EEEEecCCceee
Q 012367 377 WGVCE----------KRVVDWADVRDVI------SAICYIPDGKGFIVGSI--TGTC-----------HFYKASGNDLKL 427 (465)
Q Consensus 377 wd~~~----------~~~~~~~~~~~~V------~sv~~spdg~~l~sgs~--dG~v-----------~iwd~~~~~~~~ 427 (465)
||+.+ .+++........+ ..+..+|||++|+++.. ..++ .++|++++++.+
T Consensus 357 wdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~l 436 (595)
T 1fwx_A 357 WNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVL 436 (595)
T ss_dssp EEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEE
T ss_pred EEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEE
Confidence 99976 4455432222222 22355899999999875 1233 899998888766
Q ss_pred e
Q 012367 428 E 428 (465)
Q Consensus 428 ~ 428 (465)
.
T Consensus 437 v 437 (595)
T 1fwx_A 437 V 437 (595)
T ss_dssp E
T ss_pred E
Confidence 5
No 246
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.49 E-value=0.041 Score=50.77 Aligned_cols=190 Identities=11% Similarity=0.089 Sum_probs=113.1
Q ss_pred hhhccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCce
Q 012367 216 QEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (465)
Q Consensus 216 ~~l~~H~~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (465)
+.+.+-.+.+..|+|+|++. +++....++.|...|.. +.......
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~--------------------------------- 65 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP--------------------------------- 65 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE---------------------------------
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe---------------------------------
Confidence 45566667899999999866 44556778888888876 32221110
Q ss_pred eeecCCcceeeeccccceEEEEecCCCEE-EEEeCCCeEEEEeCCCCeE---eEEec-------CCCceEEEEEccCCCC
Q 012367 295 FQIEESPLQELHGHKGDVLDLAWSNSNYL-LSCSMDKTVRMWQVGCNQC---LNVFD-------HHNYVTCVQFNPIDDN 363 (465)
Q Consensus 295 ~~~~~~~~~~~~gh~~~V~~l~~s~~~~l-~s~s~DgtV~lWD~~~~~~---l~~~~-------h~~~V~~i~fsp~~~~ 363 (465)
+.+ ....-.|++.+++.+ ++.-.++.+.++++..... +.... .+.....|+|+| .++
T Consensus 66 ----------l~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~-~~~ 133 (255)
T 3qqz_A 66 ----------LDF-VKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSR-QDH 133 (255)
T ss_dssp ----------CSS-CSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEET-TTT
T ss_pred ----------cCC-CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeC-CCC
Confidence 111 245667888777644 5555677888888765432 22221 233568999999 665
Q ss_pred EEEEEeCCCcEEEEeCC----CC--eEEec-----ccCCCCeEEEEEeeCCCEE-EEEEcCCcEEEEEecCCceeeeEee
Q 012367 364 YFISGSIDGKVRIWGVC----EK--RVVDW-----ADVRDVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVD 431 (465)
Q Consensus 364 ~l~sgs~Dg~I~iwd~~----~~--~~~~~-----~~~~~~V~sv~~spdg~~l-~sgs~dG~v~iwd~~~~~~~~~~~~ 431 (465)
.|.++.......||.+. +. .+... ...-..+.+++++|....+ +.......+..+|..+. ....+.
T Consensus 134 ~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~--~~~~~~ 211 (255)
T 3qqz_A 134 TFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE--VIGEMS 211 (255)
T ss_dssp EEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEE
T ss_pred EEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC--EEEEEE
Confidence 55555554444555443 11 22110 1123457899999965555 44445677888887765 333444
Q ss_pred ecCcc---cccCCceeeEEEeecCC
Q 012367 432 FHDRK---KTSGNKITGIQGRISKN 453 (465)
Q Consensus 432 ~~~~~---~~~~~~It~~~f~p~gs 453 (465)
+.... .....+-.|+.|.++|+
T Consensus 212 L~~g~~~l~~~~~qpEGia~d~~G~ 236 (255)
T 3qqz_A 212 LTKGSRGLSHNIKQAEGVAMDASGN 236 (255)
T ss_dssp CSTTGGGCSSCCCSEEEEEECTTCC
T ss_pred cCCccCCcccccCCCCeeEECCCCC
Confidence 44321 12245788999999874
No 247
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.47 E-value=0.0017 Score=70.07 Aligned_cols=154 Identities=11% Similarity=0.118 Sum_probs=91.8
Q ss_pred ccCCC-cEEEEEEC-CCCCEEEEEeC-CC----cEEEEecCCc-eeeeeeecCCCCcccccCCCeEEeccCCCCceeEec
Q 012367 219 QAHKG-CIWTLKFS-PDGRYLASGGE-DG----VVRIWHVTSV-AASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 290 (465)
Q Consensus 219 ~~H~~-~I~~l~fs-pdg~~LaSgs~-Dg----~V~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (465)
.+|.- .+...+|| |||++||-+.. +| +|+++|+.++ ....
T Consensus 169 ~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-------------------------------- 216 (751)
T 2xe4_A 169 EGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-------------------------------- 216 (751)
T ss_dssp TTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC--------------------------------
T ss_pred cCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC--------------------------------
Confidence 34553 68899999 99998875432 33 5999998874 3100
Q ss_pred CCceeeecCCcceeeeccccceEEEEecCCC-EEEEEeCC-----CeEEEEeCCCCeE--eEEe--cCCCceEEEEEccC
Q 012367 291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMD-----KTVRMWQVGCNQC--LNVF--DHHNYVTCVQFNPI 360 (465)
Q Consensus 291 ~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~l~s~s~D-----gtV~lWD~~~~~~--l~~~--~h~~~V~~i~fsp~ 360 (465)
..+ . .....++|+|++ .|+....| ..|.++++.+++. ...+ ........+.|+|
T Consensus 217 ---------~~~---~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp- 280 (751)
T 2xe4_A 217 ---------DKV---S---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA- 280 (751)
T ss_dssp ---------CCE---E---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-
T ss_pred ---------ccc---c---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-
Confidence 000 0 112457899986 55555554 3688899987642 2333 3345677889999
Q ss_pred CCCEEEEEeC---CCcEEEEeCCCC--eE--Eeccc-CCCCeEEEEEeeCCCEEEEEEc-C--C--cEEEEEec
Q 012367 361 DDNYFISGSI---DGKVRIWGVCEK--RV--VDWAD-VRDVISAICYIPDGKGFIVGSI-T--G--TCHFYKAS 421 (465)
Q Consensus 361 ~~~~l~sgs~---Dg~I~iwd~~~~--~~--~~~~~-~~~~V~sv~~spdg~~l~sgs~-d--G--~v~iwd~~ 421 (465)
++++|+..+. ...|.++|+.++ .. ..+.. ......++.|+. |+.|+..+. + + .|..+++.
T Consensus 281 Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~ 353 (751)
T 2xe4_A 281 DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRG 353 (751)
T ss_dssp TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETT
T ss_pred CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCC
Confidence 9998876653 346888898764 33 33332 334445555443 555554443 3 3 45555554
No 248
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.45 E-value=1.3e-05 Score=79.03 Aligned_cols=63 Identities=13% Similarity=0.156 Sum_probs=45.4
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeE
Q 012367 320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 384 (465)
Q Consensus 320 ~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~ 384 (465)
++.+++++.|+.|+.||..+|+.+..+.. ..+.+..+.+ ++..+++++.|+.|+.||..+++.
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~ 71 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEG 71 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC------CCEEECTTTCCEEEC-----CC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEc-CCCEEEEeCCCCEEEEEECCCCce
Confidence 57899999999999999999999988876 5565555556 677888888999999999987754
No 249
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.42 E-value=0.011 Score=56.66 Aligned_cols=109 Identities=15% Similarity=0.105 Sum_probs=81.0
Q ss_pred eEEEEe---cCCCEEEEEeC--------------CCeEEEEeCC---CCeEeEEecC--------------CCceEEEEE
Q 012367 312 VLDLAW---SNSNYLLSCSM--------------DKTVRMWQVG---CNQCLNVFDH--------------HNYVTCVQF 357 (465)
Q Consensus 312 V~~l~~---s~~~~l~s~s~--------------DgtV~lWD~~---~~~~l~~~~h--------------~~~V~~i~f 357 (465)
+..|.| .|++.|+.+.. +..|..+|+. +++.+....- ......++.
T Consensus 65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav 144 (334)
T 2p9w_A 65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ 144 (334)
T ss_dssp EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence 467888 56674444332 6779999999 8877766541 124789999
Q ss_pred ccCCCCEEEEEeCC-CcEEEEeCCCCeEEeccc------CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367 358 NPIDDNYFISGSID-GKVRIWGVCEKRVVDWAD------VRDVISAICYIPDGKGFIVGSITGTCHFYKAS 421 (465)
Q Consensus 358 sp~~~~~l~sgs~D-g~I~iwd~~~~~~~~~~~------~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~ 421 (465)
.+ +|+..++++.. +.|...+.....+..+.. .....+.|+++|+|+.|++....|.+..+|+.
T Consensus 145 D~-~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 145 DR-DGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp CT-TSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred CC-CCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 99 99999999988 888888876554443321 12236799999999999888779999999987
No 250
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.41 E-value=0.021 Score=52.65 Aligned_cols=137 Identities=7% Similarity=0.006 Sum_probs=87.3
Q ss_pred cceEEEEecCC-CE-EEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe
Q 012367 310 GDVLDLAWSNS-NY-LLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD 386 (465)
Q Consensus 310 ~~V~~l~~s~~-~~-l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~ 386 (465)
..+..++|+++ +. +++...++.|..+++........+. .......++++|..+.++++-...+.|.++++.......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 35678999984 54 4455567899999997665433333 225788999998345555666667899999987543222
Q ss_pred ccc-CCCCeEEEEEeeCCCEEEEEEc---CCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCC
Q 012367 387 WAD-VRDVISAICYIPDGKGFIVGSI---TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKN 453 (465)
Q Consensus 387 ~~~-~~~~V~sv~~spdg~~l~sgs~---dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs 453 (465)
+.. .......++++|++..|+.+.. .+.|..+++.+..... +. .. ......++.+.|++.
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~--~~-~~----~~~~P~gia~d~~~~ 179 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI--LA-QD----NLGLPNGLTFDAFSS 179 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE--EE-CT----TCSCEEEEEEETTTT
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE--EE-EC----CCCCCcEEEEcCCCC
Confidence 222 2256789999997666666554 4688888887644321 11 11 124566777777543
No 251
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.40 E-value=0.0024 Score=59.15 Aligned_cols=116 Identities=10% Similarity=0.042 Sum_probs=80.7
Q ss_pred ceEEEEecCCCEEEEEeCCC--eEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecc
Q 012367 311 DVLDLAWSNSNYLLSCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA 388 (465)
Q Consensus 311 ~V~~l~~s~~~~l~s~s~Dg--tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~ 388 (465)
-...|.|+.+.++.+++.+| .|+++|+.+++.+..+.-..........+..+++++....++.+.+||..+.+++...
T Consensus 44 ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti 123 (262)
T 3nol_A 44 FTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSF 123 (262)
T ss_dssp EEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred ccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEE
Confidence 34788888444566777766 8999999999999988654444333233313455555556899999999998887644
Q ss_pred cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367 389 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 428 (465)
Q Consensus 389 ~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~ 428 (465)
.....- ..+++|++.|+++..++.|.++|..+.+..-.
T Consensus 124 ~~~~eG--~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~ 161 (262)
T 3nol_A 124 NYDGEG--WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRT 161 (262)
T ss_dssp ECSSCC--CCEEECSSCEEECCSSSEEEEECTTTCSEEEE
T ss_pred ECCCCc--eEEecCCCEEEEECCCCeEEEEcCCCCeEEEE
Confidence 443322 33446788888877788899999988766433
No 252
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.39 E-value=0.00033 Score=68.79 Aligned_cols=99 Identities=9% Similarity=-0.038 Sum_probs=76.6
Q ss_pred EEEEEeCCC----eEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEe----------CCCcEEEEeCCCCeEEec
Q 012367 322 YLLSCSMDK----TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS----------IDGKVRIWGVCEKRVVDW 387 (465)
Q Consensus 322 ~l~s~s~Dg----tV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs----------~Dg~I~iwd~~~~~~~~~ 387 (465)
.+++...++ +|.+.|..+++.+..+.-...- .+.++| ++++++++. .++.|.+||+.+++++..
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P-~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~ 111 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD 111 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC-EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC-ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEE
Confidence 455555555 8899999999999999643333 799999 888877776 368899999999988764
Q ss_pred ccCC--------CCeEEEEEeeCCCEEEEEEc--CCcEEE--EEecC
Q 012367 388 ADVR--------DVISAICYIPDGKGFIVGSI--TGTCHF--YKASG 422 (465)
Q Consensus 388 ~~~~--------~~V~sv~~spdg~~l~sgs~--dG~v~i--wd~~~ 422 (465)
.... .....++++|||++++++.. ...+.+ +|+.+
T Consensus 112 I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 112 IELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp EEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred EECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 4321 34678999999999999875 457888 88866
No 253
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.36 E-value=0.013 Score=55.89 Aligned_cols=110 Identities=5% Similarity=0.048 Sum_probs=70.4
Q ss_pred ceEEEEecC-CCEEEEEeC------------------CCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEE-eC
Q 012367 311 DVLDLAWSN-SNYLLSCSM------------------DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG-SI 370 (465)
Q Consensus 311 ~V~~l~~s~-~~~l~s~s~------------------DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sg-s~ 370 (465)
...++++.+ ++.|..+.. ++.|..||..+++.......-.....|+|+| ++++++.+ ..
T Consensus 127 ~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~-dg~~lyv~d~~ 205 (322)
T 2fp8_A 127 WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSA-DSSFVLVAEFL 205 (322)
T ss_dssp CEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECT-TSSEEEEEEGG
T ss_pred ccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECC-CCCEEEEEeCC
Confidence 356788888 764443332 3678899988776543333223456799999 88755544 55
Q ss_pred CCcEEEEeCCCC---eEEecccCCCCeEEEEEeeCCCEEEEEEc----------CCcEEEEEecC
Q 012367 371 DGKVRIWGVCEK---RVVDWADVRDVISAICYIPDGKGFIVGSI----------TGTCHFYKASG 422 (465)
Q Consensus 371 Dg~I~iwd~~~~---~~~~~~~~~~~V~sv~~spdg~~l~sgs~----------dG~v~iwd~~~ 422 (465)
.+.|.+|++... ....+..... ...+++.++|++.++... .+.|..+|..+
T Consensus 206 ~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G 269 (322)
T 2fp8_A 206 SHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFG 269 (322)
T ss_dssp GTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTS
T ss_pred CCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCC
Confidence 688999998752 2222212233 788999999986666544 46677787653
No 254
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.31 E-value=0.0033 Score=67.10 Aligned_cols=79 Identities=14% Similarity=0.159 Sum_probs=59.8
Q ss_pred CCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEeccc--CCCCeEEEEEeeCCCEE
Q 012367 329 DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD--VRDVISAICYIPDGKGF 406 (465)
Q Consensus 329 DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~--~~~~V~sv~~spdg~~l 406 (465)
+++|..||+.+++.+..+.+...+..-.+.. .+.+++.|+.|+.|+.||..+++++.... +.....-+.|..+|+..
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy 532 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY 532 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred ceeEEEEECCCCCeEeEccCCCCccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence 4889999999999999887666555445555 67889999999999999999999875332 22223457788899754
Q ss_pred EE
Q 012367 407 IV 408 (465)
Q Consensus 407 ~s 408 (465)
++
T Consensus 533 v~ 534 (689)
T 1yiq_A 533 VT 534 (689)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 255
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.30 E-value=0.0032 Score=59.69 Aligned_cols=175 Identities=12% Similarity=0.034 Sum_probs=107.8
Q ss_pred CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccc--cCCCeEEeccCCCCceeEecCCceeeec--CCcceeeeccc
Q 012367 234 GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN--AKEGKIKFGKKKSSHVPVVIPDEVFQIE--ESPLQELHGHK 309 (465)
Q Consensus 234 g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~gh~ 309 (465)
+..|..++.++.|..+|.. +................ ...+.+.++ .....++.+. ...+..+....
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vg---------t~~~~l~~~d~~g~~~~~~~~~~ 176 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVG---------SNDNYLYAINPDGTEKWRFKTND 176 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEE---------CTTSEEEEECTTSCEEEEEECSS
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEE---------cCCCEEEEECCCCCEeEEEecCC
Confidence 4467778888999999987 54443333222111100 001111111 1112333332 23344455555
Q ss_pred cceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecc
Q 012367 310 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA 388 (465)
Q Consensus 310 ~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~ 388 (465)
..+.++...+++.+..++ +.|..+| .+++.+..+. ....+.++...+ ++. +..++.++.|..+|..........
T Consensus 177 ~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~-~g~-l~v~t~~~gl~~~~~~g~~~~~~~ 251 (330)
T 3hxj_A 177 AITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISE-DGT-IYVTSLDGHLYAINPDGTEKWRFK 251 (330)
T ss_dssp CCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECT-TSC-EEEEETTTEEEEECTTSCEEEEEE
T ss_pred CceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECC-CCe-EEEEcCCCeEEEECCCCCEeEEee
Confidence 666777777788999888 8889999 7777776664 445688888877 554 455667899999985444444455
Q ss_pred cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 389 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 389 ~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
.....+.++...++ ..|.+++.+|.+..+|. +++.
T Consensus 252 ~~~~~~~~~~~~~~-g~l~v~t~~ggl~~~d~-~g~~ 286 (330)
T 3hxj_A 252 TGKRIESSPVIGNT-DTIYFGSYDGHLYAINP-DGTE 286 (330)
T ss_dssp CSSCCCSCCEECTT-SCEEEECTTCEEEEECT-TSCE
T ss_pred CCCCccccceEcCC-CeEEEecCCCCEEEECC-CCcE
Confidence 55555666666544 49999999999999986 4443
No 256
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.27 E-value=0.1 Score=56.33 Aligned_cols=196 Identities=9% Similarity=0.057 Sum_probs=114.0
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEec-CCceeeec--
Q 012367 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI-PDEVFQIE-- 298 (465)
Q Consensus 222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-- 298 (465)
...|++|...++|. |-.|+.++-|..|+..+............. .........+.........+.. ...+..+.
T Consensus 309 ~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~--~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~ 385 (795)
T 4a2l_A 309 QRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKN--SLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPI 385 (795)
T ss_dssp SSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSS--SCSCSSEEEEEECTTSCEEEEESSSCEEEECTT
T ss_pred CCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCC--CCCCCeeEEEEECCCCCEEEEECCCCeEEEcCC
Confidence 46799999999997 455666677888887654322111111000 0000001111111111111111 11222221
Q ss_pred CCcceeee---------ccccceEEEEecCCCE-EEEEeCCCeEEEEeCCCCeEeEEec-----CCCceEEEEEccCCCC
Q 012367 299 ESPLQELH---------GHKGDVLDLAWSNSNY-LLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDN 363 (465)
Q Consensus 299 ~~~~~~~~---------gh~~~V~~l~~s~~~~-l~s~s~DgtV~lWD~~~~~~l~~~~-----h~~~V~~i~fsp~~~~ 363 (465)
......+. -....|.++...+++. |..|+.++-|.+||..+++...... ....|.++...+ +++
T Consensus 386 ~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~ 464 (795)
T 4a2l_A 386 TQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGN 464 (795)
T ss_dssp TCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSC
T ss_pred CCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCC
Confidence 11222221 1235788998887776 8888888889999998876544322 245799999888 777
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEeccc-------CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 364 YFISGSIDGKVRIWGVCEKRVVDWAD-------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 364 ~l~sgs~Dg~I~iwd~~~~~~~~~~~-------~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
+.+.. . +-|.+||..+++...... ....|.++...++|...+ |+. +-+..|+..++..
T Consensus 465 lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~-~Gl~~~~~~~~~~ 529 (795)
T 4a2l_A 465 LWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWI-GGE-EGLSVFKQEGLDI 529 (795)
T ss_dssp EEEEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEE-EES-SCEEEEEEETTEE
T ss_pred EEEEe-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEE-EeC-CceEEEeCCCCeE
Confidence 66554 3 458999998887665432 236789999998886554 455 4577889877654
No 257
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.26 E-value=0.0057 Score=61.29 Aligned_cols=152 Identities=11% Similarity=0.077 Sum_probs=94.3
Q ss_pred cEEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcc
Q 012367 224 CIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 302 (465)
Q Consensus 224 ~I~~l~fsp-dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (465)
.-..|+++| ++..|+.+...+.|+.+|.......
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~--------------------------------------------- 172 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS--------------------------------------------- 172 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE---------------------------------------------
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE---------------------------------------------
Confidence 346789998 4555666655577888887653221
Q ss_pred eeeeccccceEEEEecCCC-EEEEEeC-CC----eEEEEeCCCCeEe--EEecCCCceEEEEEccCCCCEEEEEeCCCcE
Q 012367 303 QELHGHKGDVLDLAWSNSN-YLLSCSM-DK----TVRMWQVGCNQCL--NVFDHHNYVTCVQFNPIDDNYFISGSIDGKV 374 (465)
Q Consensus 303 ~~~~gh~~~V~~l~~s~~~-~l~s~s~-Dg----tV~lWD~~~~~~l--~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I 374 (465)
.+.........|++++++ .|+.+.. ++ .+.+.+. .+... ..+........++++|.++.++++-...+.|
T Consensus 173 -~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V 250 (430)
T 3tc9_A 173 -TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQV 250 (430)
T ss_dssp -EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred -EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEE
Confidence 111123456789999875 3554443 22 3333443 22211 2222233456788999667777776678899
Q ss_pred EEEeCCCCeEEec--ccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecC
Q 012367 375 RIWGVCEKRVVDW--ADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASG 422 (465)
Q Consensus 375 ~iwd~~~~~~~~~--~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~ 422 (465)
..++..++....+ .........++|+|+|++|+++. ..+.|..++...
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 251 FRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 9999987765332 22234678999999999655554 578899988875
No 258
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.25 E-value=0.0064 Score=64.62 Aligned_cols=58 Identities=14% Similarity=0.193 Sum_probs=45.4
Q ss_pred CCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367 371 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 428 (465)
Q Consensus 371 Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~ 428 (465)
+|.|..||+.+++++........+....+...+..+++|+.||.++.||..+++....
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~ 494 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQ 494 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred cceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheE
Confidence 4789999999999876444444455555666788999999999999999998877543
No 259
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.13 E-value=0.014 Score=60.89 Aligned_cols=58 Identities=16% Similarity=0.059 Sum_probs=41.7
Q ss_pred CCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367 371 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 428 (465)
Q Consensus 371 Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~ 428 (465)
+|.|..||+.+++++-.......+..-.....+..+++|+.||.++.||..+++....
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~ 522 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWK 522 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEE
Confidence 5789999999998775333333333222333567888899999999999999987554
No 260
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.01 E-value=0.022 Score=59.30 Aligned_cols=106 Identities=8% Similarity=-0.004 Sum_probs=74.5
Q ss_pred EEEEEeCCCeEEEEeCCCCeEeEEecCCC--------------ce--------------------------EEEEEccCC
Q 012367 322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHN--------------YV--------------------------TCVQFNPID 361 (465)
Q Consensus 322 ~l~s~s~DgtV~lWD~~~~~~l~~~~h~~--------------~V--------------------------~~i~fsp~~ 361 (465)
.++.++.+|.+.++|..+++.+..+.... ++ ..++|+| +
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp-~ 396 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDP-E 396 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-T
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECC-C
Confidence 46678889999999999999887764221 11 1356777 5
Q ss_pred CCEEEEEe-------------------------------------CCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCC
Q 012367 362 DNYFISGS-------------------------------------IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK 404 (465)
Q Consensus 362 ~~~l~sgs-------------------------------------~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~ 404 (465)
..+++... .++.|..||+.+++++....+...+.+..+...+.
T Consensus 397 ~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg 476 (571)
T 2ad6_A 397 SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGG 476 (571)
T ss_dssp TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTT
T ss_pred CCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCC
Confidence 55555543 35789999999998775444444444444455667
Q ss_pred EEEEEEcCCcEEEEEecCCceeee
Q 012367 405 GFIVGSITGTCHFYKASGNDLKLE 428 (465)
Q Consensus 405 ~l~sgs~dG~v~iwd~~~~~~~~~ 428 (465)
.+++++.||.++.||..+++....
T Consensus 477 ~v~~g~~dg~l~a~D~~tG~~lw~ 500 (571)
T 2ad6_A 477 LVWYATLDGYLKALDNKDGKELWN 500 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEE
T ss_pred EEEEEcCCCeEEEEECCCCCEEEE
Confidence 888899999999999999887543
No 261
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.82 E-value=0.2 Score=47.54 Aligned_cols=115 Identities=10% Similarity=-0.011 Sum_probs=75.4
Q ss_pred ceEEEEecC-CC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCC-CcEEEEeCCCCeEEe
Q 012367 311 DVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID-GKVRIWGVCEKRVVD 386 (465)
Q Consensus 311 ~V~~l~~s~-~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~D-g~I~iwd~~~~~~~~ 386 (465)
....+++.+ ++ ++++-...+.|.+.++........+. .-.....+++.|.++.++++.... +.|..+++.......
T Consensus 78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~ 157 (316)
T 1ijq_A 78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 157 (316)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE
Confidence 345677764 44 45566778899999987544333333 335678999999445555554433 688888876543322
Q ss_pred c-ccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecCCce
Q 012367 387 W-ADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDL 425 (465)
Q Consensus 387 ~-~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~~~~ 425 (465)
+ ...-...+.++++|++..|+.+. ..+.|..+|+.+...
T Consensus 158 ~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~ 198 (316)
T 1ijq_A 158 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR 198 (316)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred EEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce
Confidence 2 22345688999999877776665 467899999886543
No 262
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.75 E-value=0.56 Score=50.37 Aligned_cols=200 Identities=10% Similarity=0.027 Sum_probs=110.0
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCC-CCcccccCCCeEEeccCCCCceeEec-CCceeeec
Q 012367 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDD-GGFGSNAKEGKIKFGKKKSSHVPVVI-PDEVFQIE 298 (465)
Q Consensus 221 H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 298 (465)
....|++|...++|. |-.|+.++-|..++.............. .............+.........+.. ...++.+.
T Consensus 311 ~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~ 389 (781)
T 3v9f_A 311 SNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFE 389 (781)
T ss_dssp SSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEE
T ss_pred CCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEE
Confidence 456799999999887 5556666668888876543322111100 00000000000111111111111111 12222221
Q ss_pred CC--cceee----eccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec---CCCceEEEEEccCCCCEEEEEe
Q 012367 299 ES--PLQEL----HGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGS 369 (465)
Q Consensus 299 ~~--~~~~~----~gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~---h~~~V~~i~fsp~~~~~l~sgs 369 (465)
.. ....+ ......|.++...+++.|..|+.++-|..+|..+++...... ....|.++...+ ++++.+ |.
T Consensus 390 ~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwi-gt 467 (781)
T 3v9f_A 390 NGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIWI-GT 467 (781)
T ss_dssp TTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEEE-EE
T ss_pred CCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEEE-EE
Confidence 11 01111 123467889988877777778887889999998776533221 346799999887 666544 44
Q ss_pred CCCcEEEEeCCCCeEEeccc------CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 370 IDGKVRIWGVCEKRVVDWAD------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 370 ~Dg~I~iwd~~~~~~~~~~~------~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
. +-|.+||..+++...... ....|.++...++|.. .+|+..+-+..||..+++.
T Consensus 468 ~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~ 527 (781)
T 3v9f_A 468 H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRF-WIGTFGGGVGIYTPDMQLV 527 (781)
T ss_dssp T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCE-EEEESSSCEEEECTTCCEE
T ss_pred C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCE-EEEEcCCCEEEEeCCCCeE
Confidence 4 568999988766544322 1367899999888865 5556544466788766544
No 263
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.73 E-value=0.2 Score=48.30 Aligned_cols=113 Identities=6% Similarity=-0.066 Sum_probs=75.2
Q ss_pred eEEEEecC-CC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCC-CcEEEEeCCCCeEEec
Q 012367 312 VLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID-GKVRIWGVCEKRVVDW 387 (465)
Q Consensus 312 V~~l~~s~-~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~D-g~I~iwd~~~~~~~~~ 387 (465)
...+++.+ ++ ++++-...+.|.+.++........+. .-.....+++.|.++.++++-... +.|..+++.......+
T Consensus 118 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~ 197 (349)
T 3v64_C 118 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII 197 (349)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEES
T ss_pred ccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEE
Confidence 35677765 34 45566667889999987543333332 335678999999555566665555 7888888876443333
Q ss_pred c-cCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCc
Q 012367 388 A-DVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGND 424 (465)
Q Consensus 388 ~-~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~ 424 (465)
. ..-...+.++++|++..|+.+.. .+.|..+++.+..
T Consensus 198 ~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~ 236 (349)
T 3v64_C 198 ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH 236 (349)
T ss_dssp CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred EECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc
Confidence 2 23456789999997777666654 6789999987644
No 264
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.69 E-value=0.23 Score=46.65 Aligned_cols=98 Identities=12% Similarity=0.037 Sum_probs=65.8
Q ss_pred eEEEEecCCC--EEEEEeCCCeEEEEeCCC-CeE--eEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe
Q 012367 312 VLDLAWSNSN--YLLSCSMDKTVRMWQVGC-NQC--LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD 386 (465)
Q Consensus 312 V~~l~~s~~~--~l~s~s~DgtV~lWD~~~-~~~--l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~ 386 (465)
...| ++++ ++++-+..+.|..+|+.. +.. ...+........+++.+ +++++++....+.|.++|.. +++..
T Consensus 171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~-dG~l~va~~~~~~V~~~~~~-G~~~~ 246 (306)
T 2p4o_A 171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDV-EGNLYGATHIYNSVVRIAPD-RSTTI 246 (306)
T ss_dssp EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBT-TCCEEEECBTTCCEEEECTT-CCEEE
T ss_pred CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECC-CCCEEEEeCCCCeEEEECCC-CCEEE
Confidence 3445 5543 556666788999999864 321 22222223456789999 89988887778899999976 54422
Q ss_pred ---cccCCCCeEEEEEe---eCCCEEEEEEcCC
Q 012367 387 ---WADVRDVISAICYI---PDGKGFIVGSITG 413 (465)
Q Consensus 387 ---~~~~~~~V~sv~~s---pdg~~l~sgs~dG 413 (465)
....-..+++++|. |+++.|++++..+
T Consensus 247 ~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 247 IAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred EeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 22223668999999 8988888877654
No 265
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.69 E-value=0.1 Score=49.87 Aligned_cols=107 Identities=7% Similarity=0.061 Sum_probs=67.0
Q ss_pred ccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec-----CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe
Q 012367 309 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR 383 (465)
Q Consensus 309 ~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~-----h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~ 383 (465)
...+..+.+.+++.++.++.+|.+++++...+..-..+. +...+.++.+.| ++.+++++. ++.| .+....+.
T Consensus 204 ~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~-~~~~~~~g~-~g~i-~~S~DgG~ 280 (327)
T 2xbg_A 204 SRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT-PNEVWLAGG-AGAL-LCSQDGGQ 280 (327)
T ss_dssp SSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS-SSCEEEEES-TTCE-EEESSTTS
T ss_pred CCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC-CCEEEEEeC-CCeE-EEeCCCCc
Confidence 346677888887767777788888877533233322222 223588999998 777777665 6766 34444443
Q ss_pred EEe-cc---cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEE
Q 012367 384 VVD-WA---DVRDVISAICYIPDGKGFIVGSITGTCHFYK 419 (465)
Q Consensus 384 ~~~-~~---~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd 419 (465)
.-. .. .....+.++.|.+++. +++++.+|.|.-++
T Consensus 281 tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 281 TWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp SCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred ccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 222 22 2345688899986654 66667889776554
No 266
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.63 E-value=0.34 Score=46.64 Aligned_cols=111 Identities=14% Similarity=0.222 Sum_probs=80.6
Q ss_pred cceEEEEe--cCC-C--EEEEEeCCCeEEEEeC-------CCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEE
Q 012367 310 GDVLDLAW--SNS-N--YLLSCSMDKTVRMWQV-------GCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377 (465)
Q Consensus 310 ~~V~~l~~--s~~-~--~l~s~s~DgtV~lWD~-------~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iw 377 (465)
..+..+++ +|. + +++....+|.+..|++ .+.+.++.|.....+..+...+ ....|+.+-.+.-|..+
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd-~~g~Lyv~eEd~GIw~~ 206 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADD-EYGRLYIAEEDEAIWKF 206 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEET-TTTEEEEEETTTEEEEE
T ss_pred CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcC-CCCeEEEecccceEEEE
Confidence 45556666 553 4 6888888999999988 2346788888888899999998 77788888888666666
Q ss_pred eCC-----CCeEEeccc---CCCCeEEEEEe--eCCC-EEEEEE-cCCcEEEEEec
Q 012367 378 GVC-----EKRVVDWAD---VRDVISAICYI--PDGK-GFIVGS-ITGTCHFYKAS 421 (465)
Q Consensus 378 d~~-----~~~~~~~~~---~~~~V~sv~~s--pdg~-~l~sgs-~dG~v~iwd~~ 421 (465)
+.. +++++...+ ....+..|++. ++|+ +|++++ .+.+..+||..
T Consensus 207 da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 207 SAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp ECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred eCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 654 345554332 23468888884 5666 677777 47799999997
No 267
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=96.63 E-value=0.083 Score=55.14 Aligned_cols=58 Identities=12% Similarity=0.058 Sum_probs=41.4
Q ss_pred CCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367 371 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 428 (465)
Q Consensus 371 Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~~ 428 (465)
+|.|..||+.+++++-...+...+..-.....+..+++|+.||.++.||..+++....
T Consensus 452 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~ 509 (599)
T 1w6s_A 452 LGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWK 509 (599)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred cCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEE
Confidence 4789999999998775443332222222334567888899999999999999987554
No 268
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.57 E-value=0.041 Score=58.36 Aligned_cols=151 Identities=12% Similarity=0.062 Sum_probs=97.5
Q ss_pred CCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceE
Q 012367 234 GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVL 313 (465)
Q Consensus 234 g~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~ 313 (465)
+..++.++.|+.|..+|..+++............ .......++
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~------------------------------------~~~~~~~P~- 159 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAK------------------------------------PYSITGAPR- 159 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTS------------------------------------SCBCCSCCE-
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCC------------------------------------cceecCCCE-
Confidence 4578888899999999999887665443211000 000000111
Q ss_pred EEEecCCCEEEEEe------CCCeEEEEeCCCCeEeEEecCC--C------------------------------ceEEE
Q 012367 314 DLAWSNSNYLLSCS------MDKTVRMWQVGCNQCLNVFDHH--N------------------------------YVTCV 355 (465)
Q Consensus 314 ~l~~s~~~~l~s~s------~DgtV~lWD~~~~~~l~~~~h~--~------------------------------~V~~i 355 (465)
+. ++.++.+. .++.|..+|..+|+.+..+... . ....+
T Consensus 160 ---v~-~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~ 235 (668)
T 1kv9_A 160 ---VV-KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSM 235 (668)
T ss_dssp ---EE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCE
T ss_pred ---EE-CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccce
Confidence 01 34444443 2589999999999998887421 1 01246
Q ss_pred EEccCCCCEEEEEeCCC-------------------cEEEEeCCCCeEEeccc---CC-------CCeEEEEEeeCCC--
Q 012367 356 QFNPIDDNYFISGSIDG-------------------KVRIWGVCEKRVVDWAD---VR-------DVISAICYIPDGK-- 404 (465)
Q Consensus 356 ~fsp~~~~~l~sgs~Dg-------------------~I~iwd~~~~~~~~~~~---~~-------~~V~sv~~spdg~-- 404 (465)
++.| ....++.++.++ .|..+|..+++++-... |. ..+....+..+|+
T Consensus 236 a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~ 314 (668)
T 1kv9_A 236 AYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPR 314 (668)
T ss_dssp EEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEE
T ss_pred EEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEE
Confidence 7888 677888887665 39999999998774222 22 2233334445775
Q ss_pred -EEEEEEcCCcEEEEEecCCcee
Q 012367 405 -GFIVGSITGTCHFYKASGNDLK 426 (465)
Q Consensus 405 -~l~sgs~dG~v~iwd~~~~~~~ 426 (465)
.+++++.+|.++++|..++++.
T Consensus 315 ~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 315 KVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp EEEEECCTTSEEEEEETTTCCEE
T ss_pred EEEEEECCCCEEEEEECCCCCEe
Confidence 6899999999999999998875
No 269
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.52 E-value=0.4 Score=47.18 Aligned_cols=116 Identities=9% Similarity=-0.015 Sum_probs=78.2
Q ss_pred cceEEEEecC-CC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeC-CCcEEEEeCCCCeEE
Q 012367 310 GDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI-DGKVRIWGVCEKRVV 385 (465)
Q Consensus 310 ~~V~~l~~s~-~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~-Dg~I~iwd~~~~~~~ 385 (465)
.....|++.+ .+ ++++-...+.|.+.++........+. .-.....|++.|..+.++++-.. .+.|...++......
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~ 238 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 238 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE
Confidence 3556777775 34 55566677899999998655444443 34468899999945555555433 378888888764433
Q ss_pred ec-ccCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCce
Q 012367 386 DW-ADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDL 425 (465)
Q Consensus 386 ~~-~~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~ 425 (465)
.+ ...-...+.|+++|++..|+.+.. .+.|..+|+.+...
T Consensus 239 ~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~ 280 (400)
T 3p5b_L 239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR 280 (400)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC
T ss_pred EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc
Confidence 32 233357899999998877777654 67899999876544
No 270
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.43 E-value=0.07 Score=53.34 Aligned_cols=113 Identities=7% Similarity=0.048 Sum_probs=67.8
Q ss_pred cceEEEEecCCCEEEEEeCC----Ce-EEEEeCCCCeE-eEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe
Q 012367 310 GDVLDLAWSNSNYLLSCSMD----KT-VRMWQVGCNQC-LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR 383 (465)
Q Consensus 310 ~~V~~l~~s~~~~l~s~s~D----gt-V~lWD~~~~~~-l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~ 383 (465)
.....+++++++.|+.+... .. +...+...+.. ...+..-.....++++|.+++++++-..++.|+.+|..++.
T Consensus 182 ~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~ 261 (433)
T 4hw6_A 182 GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGT 261 (433)
T ss_dssp SCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCC
T ss_pred CCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCe
Confidence 45678999987645444432 12 33333221110 01222233456788888667777676677889999998776
Q ss_pred E-Eec--ccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecC
Q 012367 384 V-VDW--ADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASG 422 (465)
Q Consensus 384 ~-~~~--~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~ 422 (465)
+ ..+ .+.......++|+|+|+.|+++. ..+.|+.++...
T Consensus 262 ~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~ 304 (433)
T 4hw6_A 262 LTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNR 304 (433)
T ss_dssp EEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCT
T ss_pred EEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCC
Confidence 5 222 12223345799999999665555 468899888763
No 271
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.42 E-value=1.3 Score=47.39 Aligned_cols=198 Identities=7% Similarity=0.084 Sum_probs=111.8
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCC--CCceeEec-CCceeeec-
Q 012367 223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKK--SSHVPVVI-PDEVFQIE- 298 (465)
Q Consensus 223 ~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~- 298 (465)
..|.+|...++|..|-.|+.++-+..||..+............... ........+.... .....+.. ...++.+.
T Consensus 66 n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~-l~~~~i~~i~~d~~~~g~lwi~t~~~gl~~~~~ 144 (781)
T 3v9f_A 66 NELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQS-LITNDVTHITSSVQAGKGLWVCTYYRGIEYLDI 144 (781)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSS-CSCSCEEEEEECSSTTSEEEEEESSSCEEEEET
T ss_pred cccceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeeccccCCCCC-cccCcceEEEecCccCCCEEEEECCCCeeEEEC
Confidence 4599999999887455677774589999887554322111000000 0000000111111 11111111 22233221
Q ss_pred -CCcceeee------ccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEec--------CCCceEEEEEccCCCC
Q 012367 299 -ESPLQELH------GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD--------HHNYVTCVQFNPIDDN 363 (465)
Q Consensus 299 -~~~~~~~~------gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~--------h~~~V~~i~fsp~~~~ 363 (465)
...+..+. -....|.++...+++.|..++.++-|..||..+++...... ....|.++...+ +++
T Consensus 145 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~ 223 (781)
T 3v9f_A 145 ATGKFTHYNKSTVPALPSEQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDT-NGN 223 (781)
T ss_dssp TTTEEEEESTTTCTTCSCCCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECT-TCC
T ss_pred CCCeEEeeccCcccCCCccceEEEEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcC-CCC
Confidence 11122221 11245888888778877778877679999988776533211 135699999887 776
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEeccc--------CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 364 YFISGSIDGKVRIWGVCEKRVVDWAD--------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 364 ~l~sgs~Dg~I~iwd~~~~~~~~~~~--------~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
+.+. ..+ -|.+||..++....+.. ....|.++...++|. |.+|+..+-|.+|+..+..+
T Consensus 224 lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~ 290 (781)
T 3v9f_A 224 IWIG-TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQF 290 (781)
T ss_dssp EEEE-ETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC--
T ss_pred EEEE-eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCee
Confidence 6654 444 68999988877654321 245699998888774 66677756678888877654
No 272
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=96.37 E-value=0.13 Score=47.45 Aligned_cols=116 Identities=12% Similarity=0.232 Sum_probs=84.9
Q ss_pred eeeccccceEEEEecCC-C-EEEEEeCCCeEEEEeCCCCeEeEEecC--CCceEEEEEccCCCCEEEEEeCCCcEEEEeC
Q 012367 304 ELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVFDH--HNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379 (465)
Q Consensus 304 ~~~gh~~~V~~l~~s~~-~-~l~s~s~DgtV~lWD~~~~~~l~~~~h--~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~ 379 (465)
.+.|-...+..++|+|+ + ++++...++.|...|+. ++.++.+.. ......|++.+ ++.++++.-.++.+.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEc
Confidence 34455568999999985 4 45557778999999998 888888743 35688899988 7777777656788999987
Q ss_pred CCCe---EEe---c----ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367 380 CEKR---VVD---W----ADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS 421 (465)
Q Consensus 380 ~~~~---~~~---~----~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~ 421 (465)
.... .+. + ...+.....++|+|+++.|+++.......+|.+.
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~ 150 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN 150 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence 5432 111 1 1234456899999999888888887777777776
No 273
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.30 E-value=0.46 Score=45.69 Aligned_cols=136 Identities=8% Similarity=0.006 Sum_probs=86.2
Q ss_pred cceEEEEecC-CCE-EEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe
Q 012367 310 GDVLDLAWSN-SNY-LLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD 386 (465)
Q Consensus 310 ~~V~~l~~s~-~~~-l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~ 386 (465)
..+..++|++ ++. +++-...+.|..+++........+. .-.....+++.+.+++++++-...+.|.+.++.......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 3477899986 454 4455667899999998665433333 234567889988566677777777899999987654332
Q ss_pred -cccCCCCeEEEEEeeCCCEEEEEEc-C-CcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC
Q 012367 387 -WADVRDVISAICYIPDGKGFIVGSI-T-GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK 452 (465)
Q Consensus 387 -~~~~~~~V~sv~~spdg~~l~sgs~-d-G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g 452 (465)
....-.....++++|.+..|+.... . +.|..+++.+..... +. . .....-.++.+.|.+
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~--~~-~----~~~~~PnGla~d~~~ 214 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI--IA-D----THLFWPNGLTIDYAG 214 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--SC-C----SSCSCEEEEEEETTT
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEE--EE-E----CCCCCcceEEEeCCC
Confidence 2233456799999996666555443 4 778888877643321 10 0 112345667776643
No 274
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.29 E-value=0.089 Score=53.35 Aligned_cols=110 Identities=12% Similarity=0.117 Sum_probs=70.4
Q ss_pred ceEEEEe-------cCCC-EEEEEeCCC-------eEEEEeCCC-C--------eEeEEecCCCceEEEEEccCCCCEEE
Q 012367 311 DVLDLAW-------SNSN-YLLSCSMDK-------TVRMWQVGC-N--------QCLNVFDHHNYVTCVQFNPIDDNYFI 366 (465)
Q Consensus 311 ~V~~l~~-------s~~~-~l~s~s~Dg-------tV~lWD~~~-~--------~~l~~~~h~~~V~~i~fsp~~~~~l~ 366 (465)
....|+| ++++ .|+.+...+ .|.+.+... + ..+..+.| ...++++|.++.+++
T Consensus 187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~---p~giavdp~~g~LYv 263 (496)
T 3kya_A 187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQ---CNGATIHPINGELYF 263 (496)
T ss_dssp BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESC---CCCEEECTTTCCEEE
T ss_pred CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCC---ceEEEEcCCCCeEEE
Confidence 5678888 8765 455554443 366665433 1 22333333 356788996677777
Q ss_pred EEeCCCcEEEEeCC-------CCeE--------------EecccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecCC
Q 012367 367 SGSIDGKVRIWGVC-------EKRV--------------VDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGN 423 (465)
Q Consensus 367 sgs~Dg~I~iwd~~-------~~~~--------------~~~~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~~ 423 (465)
+-..++.|..+|+. ++.+ +...+.......++|+|+|+.|+++. ..+.|+.++....
T Consensus 264 td~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~ 342 (496)
T 3kya_A 264 NSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEI 342 (496)
T ss_dssp EETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred EECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCC
Confidence 77778889999987 5543 11223345678999999999655554 5678888776653
No 275
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.27 E-value=0.16 Score=48.53 Aligned_cols=143 Identities=9% Similarity=0.099 Sum_probs=94.1
Q ss_pred cccceEEEEecC-CCEEEEEe-CCCeEEEEeCCCCeEeEE-ecC-----C--CceEEEEE---ccCCCCEEEEEeC----
Q 012367 308 HKGDVLDLAWSN-SNYLLSCS-MDKTVRMWQVGCNQCLNV-FDH-----H--NYVTCVQF---NPIDDNYFISGSI---- 370 (465)
Q Consensus 308 h~~~V~~l~~s~-~~~l~s~s-~DgtV~lWD~~~~~~l~~-~~h-----~--~~V~~i~f---sp~~~~~l~sgs~---- 370 (465)
......+++|++ ++.++.++ ..++|..||...+..... +.. . ..+..|.| .| +++++++...
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af 89 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSF 89 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTT
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccc
Confidence 334455789986 45555555 789999999986644333 322 1 14689999 68 6778776442
Q ss_pred ---------CCcEEEEeCC---CCeEEeccc--------------CCCCeEEEEEeeCCCEEEEEEcC-CcEEEEEecCC
Q 012367 371 ---------DGKVRIWGVC---EKRVVDWAD--------------VRDVISAICYIPDGKGFIVGSIT-GTCHFYKASGN 423 (465)
Q Consensus 371 ---------Dg~I~iwd~~---~~~~~~~~~--------------~~~~V~sv~~spdg~~l~sgs~d-G~v~iwd~~~~ 423 (465)
++.|..||+. +++.+.... .......++..++|+..++++.. +.|..++..+.
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~ 169 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK 169 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence 6789999999 666553222 11248899999999999999988 88776666655
Q ss_pred ceeeeEeeecCcccccCCceeeEEEeecCC
Q 012367 424 DLKLEKVDFHDRKKTSGNKITGIQGRISKN 453 (465)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~It~~~f~p~gs 453 (465)
.. ..+.............+|+.+.|+|.
T Consensus 170 ~~--~~~~~~~~~~~~~~G~nGIv~~pdg~ 197 (334)
T 2p9w_A 170 TV--STFAWESGNGGQRPGYSGITFDPHSN 197 (334)
T ss_dssp CE--EEEEECCCCSSSCCSCSEEEEETTTT
T ss_pred EE--eeeeecCCCcccccCcceEEEeCCCC
Confidence 33 23332222222234588999999874
No 276
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.23 E-value=0.44 Score=51.36 Aligned_cols=115 Identities=10% Similarity=-0.008 Sum_probs=77.4
Q ss_pred ceEEEEecCC--CEEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCC-CcEEEEeCCCCeEEe
Q 012367 311 DVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID-GKVRIWGVCEKRVVD 386 (465)
Q Consensus 311 ~V~~l~~s~~--~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~D-g~I~iwd~~~~~~~~ 386 (465)
....|++.+. .++++-...+.|.+.++........+. .-.....|++.|..+.++++-... +.|.+.++.......
T Consensus 472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~ 551 (791)
T 3m0c_C 472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 551 (791)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred CcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE
Confidence 4456777653 356677778899999997554433333 345689999999445555554333 678888887655444
Q ss_pred cc-cCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCce
Q 012367 387 WA-DVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDL 425 (465)
Q Consensus 387 ~~-~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~ 425 (465)
+. ..-...+.|+++|.+..|+.+.. .+.|..+++.+...
T Consensus 552 lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~ 592 (791)
T 3m0c_C 552 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR 592 (791)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred EEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce
Confidence 33 23367899999987777776654 56788888876544
No 277
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.18 E-value=0.079 Score=52.89 Aligned_cols=135 Identities=13% Similarity=0.059 Sum_probs=84.7
Q ss_pred ceEEEEecC--CCEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeC-CC----cEEEEeCCCCe
Q 012367 311 DVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI-DG----KVRIWGVCEKR 383 (465)
Q Consensus 311 ~V~~l~~s~--~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~-Dg----~I~iwd~~~~~ 383 (465)
....|+++| ++.|+.+...+.|+.+|+..+..............|+|++ ++++|+.+.. ++ .+.+++. .+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-ESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence 457889997 3666666555889999998877655555566789999999 8885555443 22 2333443 221
Q ss_pred EE--ecccCCCCeEEEEEee-CCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCC
Q 012367 384 VV--DWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKN 453 (465)
Q Consensus 384 ~~--~~~~~~~~V~sv~~sp-dg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs 453 (465)
.. ...........++++| +|..+++-..++.|..|+..+...... .... ....-.++.|.|+|.
T Consensus 216 ~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~-~~~~-----~~~~P~gia~~pdG~ 282 (430)
T 3tc9_A 216 FKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPL-FTIQ-----DSGWEFHIQFHPSGN 282 (430)
T ss_dssp SCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEE-EECS-----SSSCCEEEEECTTSS
T ss_pred eeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEE-EEcC-----CCCcceeEEEcCCCC
Confidence 11 1111234467788999 666666666788999999887654211 1111 113456788888876
No 278
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.18 E-value=0.024 Score=61.04 Aligned_cols=110 Identities=15% Similarity=0.133 Sum_probs=72.4
Q ss_pred ceEEEEec-CCC-EEE-EEeCC----CeEEEEeCCCC-eEeEE-ecCCCceEEEEEccCCCCEEEEEeCC-----CcEEE
Q 012367 311 DVLDLAWS-NSN-YLL-SCSMD----KTVRMWQVGCN-QCLNV-FDHHNYVTCVQFNPIDDNYFISGSID-----GKVRI 376 (465)
Q Consensus 311 ~V~~l~~s-~~~-~l~-s~s~D----gtV~lWD~~~~-~~l~~-~~h~~~V~~i~fsp~~~~~l~sgs~D-----g~I~i 376 (465)
.+...+|+ |++ +|+ +.+.+ .+|+++|+.++ +.+.. +. .....+.|+| +++.|+....| ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~--~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS--GTNGEIVWGP-DHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE--EECSCCEECS-STTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc--CceeeEEEec-CCCEEEEEEECCCCCCCEEEE
Confidence 67789999 987 444 33333 35999999988 63211 11 1134678999 88877776665 35888
Q ss_pred EeCCCCe----EEecccCCCCeEEEEEeeCCCEEEEEEc---CCcEEEEEecCC
Q 012367 377 WGVCEKR----VVDWADVRDVISAICYIPDGKGFIVGSI---TGTCHFYKASGN 423 (465)
Q Consensus 377 wd~~~~~----~~~~~~~~~~V~sv~~spdg~~l~sgs~---dG~v~iwd~~~~ 423 (465)
+++.++. ++...........+.|+|||++|+..+. ...|.++|+.++
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 8887653 2211123345678899999998887663 345777888765
No 279
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.03 E-value=0.58 Score=44.43 Aligned_cols=115 Identities=8% Similarity=-0.028 Sum_probs=73.4
Q ss_pred ceEEEEecC-CC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEe-CCCcEEEEeCCCCeEEe
Q 012367 311 DVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS-IDGKVRIWGVCEKRVVD 386 (465)
Q Consensus 311 ~V~~l~~s~-~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs-~Dg~I~iwd~~~~~~~~ 386 (465)
....+++.+ ++ ++++-...+.|.++++........+ ..-.....|++.|..+.++++-. ..+.|...++.......
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~ 159 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI 159 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE
Confidence 345677765 34 5556666789999998754332233 34456789999994444444442 25788888876533222
Q ss_pred c-ccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecCCce
Q 012367 387 W-ADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDL 425 (465)
Q Consensus 387 ~-~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~~~~ 425 (465)
+ ...-...+.++++|++..|+.+. ..+.|..+++.+...
T Consensus 160 ~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~ 200 (318)
T 3sov_A 160 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR 200 (318)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred EEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce
Confidence 2 22335678999999777766665 467899999876443
No 280
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=95.95 E-value=0.73 Score=44.99 Aligned_cols=136 Identities=7% Similarity=-0.017 Sum_probs=86.7
Q ss_pred cceEEEEecC-CC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe
Q 012367 310 GDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD 386 (465)
Q Consensus 310 ~~V~~l~~s~-~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~ 386 (465)
..+..++|++ ++ ++++-...+.|..+++........+. .......+++.+..++++++-...+.|.+.++.......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 4577899986 45 44555667899999998765444443 223557788888566666777777889999887554333
Q ss_pred -cccCCCCeEEEEEeeCCCEEEEEEc-C-CcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecC
Q 012367 387 -WADVRDVISAICYIPDGKGFIVGSI-T-GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISK 452 (465)
Q Consensus 387 -~~~~~~~V~sv~~spdg~~l~sgs~-d-G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~g 452 (465)
....-.....++++|.+..|+.... . +.|..+++.+...... . .. ....-.++.+.|.+
T Consensus 196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~--~-~~----~~~~PnGlavd~~~ 257 (386)
T 3v65_B 196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII--A-DT----HLFWPNGLTIDYAG 257 (386)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE--E-CS----SCSCEEEEEEEGGG
T ss_pred eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEE--E-EC----CCCCeeeEEEeCCC
Confidence 2233456899999997766665554 3 6788888776533221 1 11 12345677776653
No 281
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=95.95 E-value=1.3 Score=43.04 Aligned_cols=195 Identities=7% Similarity=-0.085 Sum_probs=104.8
Q ss_pred CcEEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeeeeecCC-CC--cccccCCCeEEeccCCCCceeEecCCceeeec
Q 012367 223 GCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDD-GG--FGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 298 (465)
Q Consensus 223 ~~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (465)
..+..|+|++.+. ++.+-...+.|..+++............. .. +......+.+.+.......+..... .
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~------d 189 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL------D 189 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBT------T
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeC------C
Confidence 3477999997655 44555567889999987654322211111 00 1111112222222222221211111 1
Q ss_pred CCcceee-eccccceEEEEecCC-CEEE-EEeCC-CeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeCCCc
Q 012367 299 ESPLQEL-HGHKGDVLDLAWSNS-NYLL-SCSMD-KTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGK 373 (465)
Q Consensus 299 ~~~~~~~-~gh~~~V~~l~~s~~-~~l~-s~s~D-gtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~Dg~ 373 (465)
......+ .........|++.|. +.|+ +-... +.|...++......... ..-.....|+|+|..++++++-+..+.
T Consensus 190 g~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~ 269 (386)
T 3v65_B 190 GAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV 269 (386)
T ss_dssp SCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTE
T ss_pred CCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCE
Confidence 2222222 223356788999974 5444 44444 67888888643322222 233457899999845555666666788
Q ss_pred EEEEeCCCCeEEe-cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCc
Q 012367 374 VRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 424 (465)
Q Consensus 374 I~iwd~~~~~~~~-~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~ 424 (465)
|..+|+....... ..........+++ ..+..+++-...+.|..++..+++
T Consensus 270 I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 270 IERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp EEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCc
Confidence 9999987543222 2223345677888 455555665567888888854443
No 282
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=95.88 E-value=0.16 Score=53.60 Aligned_cols=98 Identities=11% Similarity=0.144 Sum_probs=62.9
Q ss_pred CCeEEEEeCCCCeEeEEec-CC---------CceEEEEEccCCCCEEEEEeCCC-----------cEEEEeCCCCeEEec
Q 012367 329 DKTVRMWQVGCNQCLNVFD-HH---------NYVTCVQFNPIDDNYFISGSIDG-----------KVRIWGVCEKRVVDW 387 (465)
Q Consensus 329 DgtV~lWD~~~~~~l~~~~-h~---------~~V~~i~fsp~~~~~l~sgs~Dg-----------~I~iwd~~~~~~~~~ 387 (465)
...+..||..+........ +. ..-.++.|...++++++.|+.++ .|.+||..+......
T Consensus 368 ~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 447 (656)
T 1k3i_A 368 STAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVF 447 (656)
T ss_dssp SSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEE
T ss_pred ccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEE
Confidence 3467889988776443332 11 12345555444788888888543 688899887765543
Q ss_pred c--c-CCC-CeEEEEEeeCCCEEEEEEcC-----------CcEEEEEecCCcee
Q 012367 388 A--D-VRD-VISAICYIPDGKGFIVGSIT-----------GTCHFYKASGNDLK 426 (465)
Q Consensus 388 ~--~-~~~-~V~sv~~spdg~~l~sgs~d-----------G~v~iwd~~~~~~~ 426 (465)
. . ... .-.+++..|+|+.+++|+.+ ..+.+||..+++..
T Consensus 448 ~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~ 501 (656)
T 1k3i_A 448 ASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY 501 (656)
T ss_dssp CTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE
T ss_pred ccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCcee
Confidence 2 1 122 23455677899999999865 46899999876543
No 283
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=95.88 E-value=0.11 Score=54.12 Aligned_cols=80 Identities=13% Similarity=0.109 Sum_probs=55.6
Q ss_pred CCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeE--EEEEeeCCCE
Q 012367 328 MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS--AICYIPDGKG 405 (465)
Q Consensus 328 ~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~--sv~~spdg~~ 405 (465)
.++.|..||+.+++.+..+.+..++..-.... .+.+++.|+.|+.++.||..+++++........+. -+.|..+|+.
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~q 542 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHLPLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESSCCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CcceEEEEECCCCCEEEEecCCCCCcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEE
Confidence 46899999999999988876444333222222 46678889999999999999999886444333333 3667788864
Q ss_pred EEE
Q 012367 406 FIV 408 (465)
Q Consensus 406 l~s 408 (465)
.++
T Consensus 543 Yv~ 545 (582)
T 1flg_A 543 YLG 545 (582)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
No 284
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=95.83 E-value=1.3 Score=41.80 Aligned_cols=116 Identities=14% Similarity=0.026 Sum_probs=75.0
Q ss_pred cceEEEEecCC-C-EEEEEeCCCeEEEEeCCC---CeEeE-Eec-CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCC
Q 012367 310 GDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGC---NQCLN-VFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 382 (465)
Q Consensus 310 ~~V~~l~~s~~-~-~l~s~s~DgtV~lWD~~~---~~~l~-~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~ 382 (465)
..+..++|++. + .+++-...+.|..+++.. +.... .+. .-..+..+++.+.+++++++-...+.|.++++...
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 45678999874 5 445556678999999876 12222 232 22456789998745666667677889999998765
Q ss_pred eEEecc-cCCCCeEEEEEeeCCCEEEEEEcC--CcEEEEEecCCce
Q 012367 383 RVVDWA-DVRDVISAICYIPDGKGFIVGSIT--GTCHFYKASGNDL 425 (465)
Q Consensus 383 ~~~~~~-~~~~~V~sv~~spdg~~l~sgs~d--G~v~iwd~~~~~~ 425 (465)
....+. ..-.....++++|.+..|+.+... +.|..+++.+...
T Consensus 110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~ 155 (316)
T 1ijq_A 110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 155 (316)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe
Confidence 443322 234568999999976666555542 6788888776543
No 285
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.80 E-value=0.65 Score=44.90 Aligned_cols=91 Identities=18% Similarity=0.221 Sum_probs=59.5
Q ss_pred CCeEEEEeCCCC--e--EeEEecC--CCceEEEEEccCCCCEEEEEeC-----------------CCcEEEEeCCCCeEE
Q 012367 329 DKTVRMWQVGCN--Q--CLNVFDH--HNYVTCVQFNPIDDNYFISGSI-----------------DGKVRIWGVCEKRVV 385 (465)
Q Consensus 329 DgtV~lWD~~~~--~--~l~~~~h--~~~V~~i~fsp~~~~~l~sgs~-----------------Dg~I~iwd~~~~~~~ 385 (465)
+.+|.+|++..+ . .+..+.+ -...+.+.+.+ ++.+.++... .|.|.-+|. +++.
T Consensus 138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~ 214 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVR 214 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCE
T ss_pred CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEE
Confidence 467888776542 2 2333433 23678999999 8888887641 244555554 3333
Q ss_pred ecccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecC
Q 012367 386 DWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASG 422 (465)
Q Consensus 386 ~~~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~ 422 (465)
.....-...+.++|+||++.|+++. ..+.|..|++..
T Consensus 215 ~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 215 VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 3333345678999999998887766 478999999974
No 286
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.54 E-value=0.12 Score=51.04 Aligned_cols=118 Identities=12% Similarity=0.122 Sum_probs=77.8
Q ss_pred CCeEEEEeCCCCeEeEEecCC-----CceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe-------------E--Eecc
Q 012367 329 DKTVRMWQVGCNQCLNVFDHH-----NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR-------------V--VDWA 388 (465)
Q Consensus 329 DgtV~lWD~~~~~~l~~~~h~-----~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~-------------~--~~~~ 388 (465)
++.||.-++.....-+.+... ..|..+..+| +|++++..+ +..|.|-.+..+. + ....
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~ 117 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSID 117 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGG
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcC
Confidence 477888887744444444332 2578899999 999999887 5689999887321 1 1111
Q ss_pred c----CCCCeEEEEEeeC---CCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccc-----cCCceeeEEEee
Q 012367 389 D----VRDVISAICYIPD---GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT-----SGNKITGIQGRI 450 (465)
Q Consensus 389 ~----~~~~V~sv~~spd---g~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~-----~~~~It~~~f~p 450 (465)
. ....|..+.|||- +..|++-+.|+.|++||+....-... .+...... ....|.++.|..
T Consensus 118 ~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~--~L~k~~~~fg~d~~~~ev~S~~Fg~ 189 (452)
T 3pbp_A 118 EEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI--VLNKPNNSFGLDARVNDITDLEFSK 189 (452)
T ss_dssp GCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE--EESCCCSEEESCSSCCCEEEEEECT
T ss_pred CcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc--chhccccccCCCcccceEEEEEEcC
Confidence 1 2467999999994 56899999999999999986322111 22211111 125677888876
No 287
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.49 E-value=0.4 Score=49.64 Aligned_cols=108 Identities=10% Similarity=-0.049 Sum_probs=70.3
Q ss_pred CCEEEEEeC------CCeEEEEeCCCCeEeEEecCCCce---------------------------------------EE
Q 012367 320 SNYLLSCSM------DKTVRMWQVGCNQCLNVFDHHNYV---------------------------------------TC 354 (465)
Q Consensus 320 ~~~l~s~s~------DgtV~lWD~~~~~~l~~~~h~~~V---------------------------------------~~ 354 (465)
++.++.++. ++.|..+|..+++.+..+...... ..
T Consensus 160 ~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~ 239 (571)
T 2ad6_A 160 KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGW 239 (571)
T ss_dssp TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSC
T ss_pred CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeee
Confidence 355555554 789999999999998887532211 13
Q ss_pred EEEccCCCCEEEEEeCC----------------CcEEEEeCCCCeEEeccc---CC-------CCeEEEEEeeCCC---E
Q 012367 355 VQFNPIDDNYFISGSID----------------GKVRIWGVCEKRVVDWAD---VR-------DVISAICYIPDGK---G 405 (465)
Q Consensus 355 i~fsp~~~~~l~sgs~D----------------g~I~iwd~~~~~~~~~~~---~~-------~~V~sv~~spdg~---~ 405 (465)
+++.| ....++.+..+ +.|..+|..+++.+-... |. ....-+...++|+ .
T Consensus 240 ~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~ 318 (571)
T 2ad6_A 240 YAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPL 318 (571)
T ss_dssp CEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEE
T ss_pred EEEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEE
Confidence 55666 44555555432 359999999998764221 11 1112233335784 6
Q ss_pred EEEEEcCCcEEEEEecCCceeee
Q 012367 406 FIVGSITGTCHFYKASGNDLKLE 428 (465)
Q Consensus 406 l~sgs~dG~v~iwd~~~~~~~~~ 428 (465)
++.++.+|.++++|..++++...
T Consensus 319 v~~~~~~G~l~~lD~~tG~~~w~ 341 (571)
T 2ad6_A 319 LSHIDRNGILYTLNRENGNLIVA 341 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEEE
T ss_pred EEEeCCCcEEEEEECCCCCEEee
Confidence 77889999999999999877543
No 288
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=95.36 E-value=1.4 Score=46.02 Aligned_cols=158 Identities=6% Similarity=-0.070 Sum_probs=98.5
Q ss_pred CcEEEEEECCCCCEEE-EEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCc
Q 012367 223 GCIWTLKFSPDGRYLA-SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 301 (465)
Q Consensus 223 ~~I~~l~fspdg~~La-Sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (465)
..+..|+|++.+..|+ +-..++.|..+++.......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~------------------------------------------- 73 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH------------------------------------------- 73 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------------------------------------------
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE-------------------------------------------
Confidence 3577999998655544 54567888888776421110
Q ss_pred ceeeeccccceEEEEecC--CCEEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEe-CCCcEEEE
Q 012367 302 LQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS-IDGKVRIW 377 (465)
Q Consensus 302 ~~~~~gh~~~V~~l~~s~--~~~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs-~Dg~I~iw 377 (465)
.+.........|++.+ ++++++-...+.|.+.++........+ ..-.....|++.|..+.++.+-. ..+.|...
T Consensus 74 --v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~ 151 (628)
T 4a0p_A 74 --VVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRA 151 (628)
T ss_dssp --EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred --EEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEE
Confidence 0000112344566654 335566666788999998654332223 33456789999995555555542 25678888
Q ss_pred eCCCCeEEecccCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCce
Q 012367 378 GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDL 425 (465)
Q Consensus 378 d~~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~ 425 (465)
++.......+...-.....|+++++++.|+.+.. .+.|..+++.+...
T Consensus 152 ~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~ 200 (628)
T 4a0p_A 152 AMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR 200 (628)
T ss_dssp ETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred eCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce
Confidence 8766544443344567899999998777776654 67888888877554
No 289
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=95.29 E-value=1.3 Score=41.87 Aligned_cols=110 Identities=14% Similarity=0.153 Sum_probs=64.2
Q ss_pred ccceEEEEecCCCEEEEEeCCCeE-EEEeC--CCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 012367 309 KGDVLDLAWSNSNYLLSCSMDKTV-RMWQV--GCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 385 (465)
Q Consensus 309 ~~~V~~l~~s~~~~l~s~s~DgtV-~lWD~--~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~ 385 (465)
...+..+++.+++.++..+.++.+ +-+|- .+-+.+ .......+..+.+.| ++.+++. +.+|.+++++...+...
T Consensus 162 ~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~-~~~~~~~~~~~~~~~-~g~~~~~-~~~G~~~~s~~D~G~tW 238 (327)
T 2xbg_A 162 IGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH-NRTTSRRLHNMGFTP-DGRLWMI-VNGGKIAFSDPDNSENW 238 (327)
T ss_dssp CCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE-ECCSSSCEEEEEECT-TSCEEEE-ETTTEEEEEETTEEEEE
T ss_pred CcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC-CCCCCCccceeEECC-CCCEEEE-eCCceEEEecCCCCCee
Confidence 346778888887655555555544 44443 222222 223556788999988 7776654 45788877743323322
Q ss_pred e-cc----cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367 386 D-WA----DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN 423 (465)
Q Consensus 386 ~-~~----~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~ 423 (465)
. .. .....+.++++.|++..++++ .+|.+ ++..+.+
T Consensus 239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG 279 (327)
T 2xbg_A 239 GELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGG 279 (327)
T ss_dssp CCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTT
T ss_pred EeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCC
Confidence 2 11 122358899999887766665 47766 4444433
No 290
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=95.22 E-value=0.21 Score=49.83 Aligned_cols=137 Identities=9% Similarity=0.010 Sum_probs=83.3
Q ss_pred ceEEEEecCC---CEEEEEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCC---Cc-EEEEeCCCCe
Q 012367 311 DVLDLAWSNS---NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---GK-VRIWGVCEKR 383 (465)
Q Consensus 311 ~V~~l~~s~~---~~l~s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~D---g~-I~iwd~~~~~ 383 (465)
....++|+|+ +.|+.+...+.|+.+|+.++..............++|++ +++++++.... .. +...+...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCCe
Confidence 4568999984 666666555899999998888766666566789999999 88865554421 11 3333322211
Q ss_pred E-EecccCCCCeEEEEEee-CCCEEEEEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCC
Q 012367 384 V-VDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKN 453 (465)
Q Consensus 384 ~-~~~~~~~~~V~sv~~sp-dg~~l~sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs 453 (465)
. ............++++| +|.+.++-..++.|+.++..++........... ...-.++.|+|++.
T Consensus 219 ~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~-----~~~~~~ia~dpdG~ 285 (433)
T 4hw6_A 219 TERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT-----KGSNFHIVWHPTGD 285 (433)
T ss_dssp CCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC-----CSSCEEEEECTTSS
T ss_pred eccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC-----CCCcccEEEeCCCC
Confidence 1 01111234467788999 666555555678899999876655221111111 11223688888876
No 291
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.21 E-value=0.41 Score=49.84 Aligned_cols=100 Identities=10% Similarity=-0.041 Sum_probs=67.3
Q ss_pred CCCeEEEEeCCCCeEeEEecCCCce---------------------------------------EEEEEccCCCCEEEEE
Q 012367 328 MDKTVRMWQVGCNQCLNVFDHHNYV---------------------------------------TCVQFNPIDDNYFISG 368 (465)
Q Consensus 328 ~DgtV~lWD~~~~~~l~~~~h~~~V---------------------------------------~~i~fsp~~~~~l~sg 368 (465)
.++.|+.+|..+|+.+..+...... ..+++.+ ....++.+
T Consensus 180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g 258 (599)
T 1w6s_A 180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFG 258 (599)
T ss_dssp CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEe
Confidence 3799999999999999887533221 1345566 56666666
Q ss_pred eCC----------------CcEEEEeCCCCeEEecc---cCCC-------CeEEEEEe-eCC---CEEEEEEcCCcEEEE
Q 012367 369 SID----------------GKVRIWGVCEKRVVDWA---DVRD-------VISAICYI-PDG---KGFIVGSITGTCHFY 418 (465)
Q Consensus 369 s~D----------------g~I~iwd~~~~~~~~~~---~~~~-------~V~sv~~s-pdg---~~l~sgs~dG~v~iw 418 (465)
..+ +.|..+|..+++++-.. .|.. ...-+... .+| +.++.++.+|.++++
T Consensus 259 ~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~l 338 (599)
T 1w6s_A 259 TGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTL 338 (599)
T ss_dssp CCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEE
T ss_pred CCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEE
Confidence 554 37999999999876421 1211 11112222 467 467788999999999
Q ss_pred EecCCceeee
Q 012367 419 KASGNDLKLE 428 (465)
Q Consensus 419 d~~~~~~~~~ 428 (465)
|..++++...
T Consensus 339 D~~tG~~lw~ 348 (599)
T 1w6s_A 339 DRTDGALVSA 348 (599)
T ss_dssp ETTTCCEEEE
T ss_pred ECCCCCEeec
Confidence 9999887554
No 292
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=94.98 E-value=3.2 Score=46.67 Aligned_cols=111 Identities=9% Similarity=0.117 Sum_probs=74.9
Q ss_pred cceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEe--EEecCCCceEEEEEccCC-----CCEEEEEeC-CCcEEEEeCCC
Q 012367 310 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCL--NVFDHHNYVTCVQFNPID-----DNYFISGSI-DGKVRIWGVCE 381 (465)
Q Consensus 310 ~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l--~~~~h~~~V~~i~fsp~~-----~~~l~sgs~-Dg~I~iwd~~~ 381 (465)
..|...+.+. .+++.++ ++.+.++.+..++.. ........|.|+++.|.. .++++.|.. |++|+|+++.+
T Consensus 514 ~~I~~As~n~-~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 514 KNISVASCNS-SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp CCCCEEEECS-SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred CEEEEEEeCC-CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 3566666544 4555554 578888887765432 223456789999998732 479999997 99999999988
Q ss_pred CeEEecccC--CCCeEEEEEee--CCCEEEEEEcCCcEEEEEecC
Q 012367 382 KRVVDWADV--RDVISAICYIP--DGKGFIVGSITGTCHFYKASG 422 (465)
Q Consensus 382 ~~~~~~~~~--~~~V~sv~~sp--dg~~l~sgs~dG~v~iwd~~~ 422 (465)
.+.+..... .....++++.. ...+|.+|-.||.+.-+.++.
T Consensus 592 l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~ 636 (1158)
T 3ei3_A 592 FELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNI 636 (1158)
T ss_dssp CCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECT
T ss_pred CCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcC
Confidence 666553333 23556665543 335789999999987777653
No 293
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.95 E-value=1.5 Score=43.89 Aligned_cols=32 Identities=16% Similarity=0.129 Sum_probs=22.9
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEecCC
Q 012367 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS 253 (465)
Q Consensus 222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~ 253 (465)
-..-+.|+|.|+|+++++-...+.|++++..+
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~ 57 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPES 57 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCC
Confidence 34567999999999777755445677776543
No 294
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=94.82 E-value=3 Score=39.99 Aligned_cols=56 Identities=7% Similarity=-0.027 Sum_probs=33.0
Q ss_pred CCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceee---eEeeecCcccccCCceeeEEEeecC
Q 012367 392 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL---EKVDFHDRKKTSGNKITGIQGRISK 452 (465)
Q Consensus 392 ~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~It~~~f~p~g 452 (465)
.....++| .+|..+++.-..+.|...++.+..... ....+- ....+++++.+.|+|
T Consensus 268 ~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~----~~~~rp~~v~~~pdG 326 (352)
T 2ism_A 268 FPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL----SGFGRLREVQVGPDG 326 (352)
T ss_dssp CCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE----ESSCCEEEEEECTTS
T ss_pred CCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec----ccCCCeeEEEECCCC
Confidence 34667777 567666665566778777776443211 011111 123578999999887
No 295
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=94.80 E-value=3.3 Score=40.46 Aligned_cols=117 Identities=15% Similarity=0.016 Sum_probs=78.6
Q ss_pred ccceEEEEecC-CCE-EEEEeCCCeEEEEeCCCC----eEeEEec-CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCC
Q 012367 309 KGDVLDLAWSN-SNY-LLSCSMDKTVRMWQVGCN----QCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 381 (465)
Q Consensus 309 ~~~V~~l~~s~-~~~-l~s~s~DgtV~lWD~~~~----~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~ 381 (465)
...+..|+|++ ++. +++-...+.|+.+++... .....+. .-.....+++.+..++++++-...+.|.+.++..
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 45678899987 454 445556788999998752 2223333 3446788999885677777777788999999987
Q ss_pred CeEEec-ccCCCCeEEEEEeeCCCEEEEEEc--CCcEEEEEecCCce
Q 012367 382 KRVVDW-ADVRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDL 425 (465)
Q Consensus 382 ~~~~~~-~~~~~~V~sv~~spdg~~l~sgs~--dG~v~iwd~~~~~~ 425 (465)
.....+ ...-.....|+++|.+..|+.... .+.|...++.+...
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~ 237 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 237 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc
Confidence 654443 234456899999997666666553 47888888876543
No 296
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.80 E-value=1.2 Score=42.82 Aligned_cols=151 Identities=13% Similarity=0.137 Sum_probs=83.6
Q ss_pred hhccCCCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceee
Q 012367 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (465)
Q Consensus 217 ~l~~H~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (465)
.+..--..-+.|+|.|+|.++++--..|.|++++...+........
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~---------------------------------- 71 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEV---------------------------------- 71 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC----------------------------------
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeeccc----------------------------------
Confidence 3334445678999999999887776589998887554322100000
Q ss_pred ecCCcceeeeccccceEEEEecCC----CEEEEE---eCCCeEEEEeCCCC----------eEe-EEec--CCCceEEEE
Q 012367 297 IEESPLQELHGHKGDVLDLAWSNS----NYLLSC---SMDKTVRMWQVGCN----------QCL-NVFD--HHNYVTCVQ 356 (465)
Q Consensus 297 ~~~~~~~~~~gh~~~V~~l~~s~~----~~l~s~---s~DgtV~lWD~~~~----------~~l-~~~~--h~~~V~~i~ 356 (465)
+ ..+.........|+++|+ +.|... ..+..|.-|.+..+ +.+ ..+. ..+.-..|.
T Consensus 72 ----~-~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~ 146 (347)
T 3das_A 72 ----P-GVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIA 146 (347)
T ss_dssp ----T-TCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEE
T ss_pred ----C-ceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCcccc
Confidence 0 001123456788999984 544432 23455655655431 111 2221 223456799
Q ss_pred EccCCCCEEEEEeC-------------CCcEEEEeCCCC---------eEEecccCCCCeEEEEEeeCCCEEEE
Q 012367 357 FNPIDDNYFISGSI-------------DGKVRIWGVCEK---------RVVDWADVRDVISAICYIPDGKGFIV 408 (465)
Q Consensus 357 fsp~~~~~l~sgs~-------------Dg~I~iwd~~~~---------~~~~~~~~~~~V~sv~~spdg~~l~s 408 (465)
|.| ++.++++.+. -|+|.-.+.... ..+...+|. ....++|+|+|.+.++
T Consensus 147 fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~ 218 (347)
T 3das_A 147 FGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFAS 218 (347)
T ss_dssp ECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEE
T ss_pred CCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEE
Confidence 999 8888777542 244444454322 111222333 3567899998765554
No 297
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.68 E-value=0.21 Score=44.74 Aligned_cols=102 Identities=13% Similarity=0.111 Sum_probs=61.7
Q ss_pred eEEEEecCCCEEEEEeCCCeEEEEeCCCCeEe------EEecC--CCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCe
Q 012367 312 VLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCL------NVFDH--HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR 383 (465)
Q Consensus 312 V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l------~~~~h--~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~ 383 (465)
-.++.|.|++.|..+ .||.|.-++-.+.... ..+.. =..+.+|.|.| ++.+.+.. |+.++-+...++.
T Consensus 90 F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~P~~~ 165 (236)
T 1tl2_A 90 FQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYKALPPVSN 165 (236)
T ss_dssp CSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEEECCCSST
T ss_pred ceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEecCCCCCC
Confidence 467888899877776 6699988886432111 11211 13579999999 99888776 7776544444322
Q ss_pred EEecc--------cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367 384 VVDWA--------DVRDVISAICYIPDGKGFIVGSITGTCHFYKAS 421 (465)
Q Consensus 384 ~~~~~--------~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~ 421 (465)
-..+. ..-..-+-+.|.|+|...++. +| ++|...
T Consensus 166 ~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~ 207 (236)
T 1tl2_A 166 QDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYEDY 207 (236)
T ss_dssp TCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEES
T ss_pred CcccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEecC
Confidence 11111 222234557788888776665 66 455543
No 298
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.22 E-value=0.058 Score=48.38 Aligned_cols=99 Identities=10% Similarity=0.105 Sum_probs=65.7
Q ss_pred ceEEEEecCCCEEEEEeCCCeEEEEeCCCCeE------eEEecCCC--ceEEEEEccCCCCEEEEEeCCCcEEEEeCCCC
Q 012367 311 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQC------LNVFDHHN--YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 382 (465)
Q Consensus 311 ~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~------l~~~~h~~--~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~ 382 (465)
.+.+++|+|++.|.+. .+|.+.-.+..+... -..+.... .-.++.|.| ++.+.++ .||.|+-++-.+.
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCcC
Confidence 6679999999877777 778777777655222 12221111 147889999 8888887 5699988887543
Q ss_pred eEEeccc--------CCCCeEEEEEeeCCCEEEEEEcCCcE
Q 012367 383 RVVDWAD--------VRDVISAICYIPDGKGFIVGSITGTC 415 (465)
Q Consensus 383 ~~~~~~~--------~~~~V~sv~~spdg~~l~sgs~dG~v 415 (465)
....|.. .=..+..|.+.|+|.+.++. ||.+
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l 156 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF 156 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence 2222211 11357999999999777766 8874
No 299
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=94.15 E-value=3.6 Score=39.51 Aligned_cols=125 Identities=10% Similarity=0.143 Sum_probs=80.7
Q ss_pred eeeecCCcceeeeccccceEEEEecCC----C----EEE-EEeC--CCeEEEEeC--CCCeEeEEecC-------C-Cce
Q 012367 294 VFQIEESPLQELHGHKGDVLDLAWSNS----N----YLL-SCSM--DKTVRMWQV--GCNQCLNVFDH-------H-NYV 352 (465)
Q Consensus 294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~----~----~l~-s~s~--DgtV~lWD~--~~~~~l~~~~h-------~-~~V 352 (465)
+|++.++.++.+.. +.++.+..-|+ + +++ +.-. +.+|++|++ .++. +..+.. . ..+
T Consensus 54 Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~p 130 (355)
T 3amr_A 54 VYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEV 130 (355)
T ss_dssp EEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSC
T ss_pred EEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCe
Confidence 45555566666543 34444444431 1 223 3333 579999966 4443 555522 1 456
Q ss_pred EEEEE--ccCCCC-EEEEEeCCCcEEEEeCC-------CCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEec
Q 012367 353 TCVQF--NPIDDN-YFISGSIDGKVRIWGVC-------EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS 421 (465)
Q Consensus 353 ~~i~f--sp~~~~-~l~sgs~Dg~I~iwd~~-------~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~ 421 (465)
..+|+ +|..+. |++....+|.+..|++. +.+++........+..+...+....|+++-.+.-|..|+..
T Consensus 131 yGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 131 YGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAE 209 (355)
T ss_dssp CCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred eEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccceEEEEeCC
Confidence 67777 774454 68888889999999982 33556656667789999999999999999998666555544
No 300
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=94.12 E-value=0.35 Score=50.86 Aligned_cols=112 Identities=14% Similarity=0.234 Sum_probs=74.2
Q ss_pred EEEecC-CC-EEEEEeCCC-----------eEEEEeCCCCeE--eEEec--CCCceEEEEEccCCCCEEEEEeC-CCcEE
Q 012367 314 DLAWSN-SN-YLLSCSMDK-----------TVRMWQVGCNQC--LNVFD--HHNYVTCVQFNPIDDNYFISGSI-DGKVR 375 (465)
Q Consensus 314 ~l~~s~-~~-~l~s~s~Dg-----------tV~lWD~~~~~~--l~~~~--h~~~V~~i~fsp~~~~~l~sgs~-Dg~I~ 375 (465)
..++.+ ++ +++.|+.+. .+.+||..+++. +..+. +.....++++.+ ++.+++.|+. +..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC-CCCEEEeCCCCCCceE
Confidence 345555 55 566666542 689999988753 22332 333444567777 8999999984 46899
Q ss_pred EEeCCCCeEEecccC--CCCeEEEEEeeCCCEEEEEE-cC-----CcEEEEEecCCcee
Q 012367 376 IWGVCEKRVVDWADV--RDVISAICYIPDGKGFIVGS-IT-----GTCHFYKASGNDLK 426 (465)
Q Consensus 376 iwd~~~~~~~~~~~~--~~~V~sv~~spdg~~l~sgs-~d-----G~v~iwd~~~~~~~ 426 (465)
+||..+.+....... ...-.+++..++|+.++.|+ .+ ..+.+||..+++..
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence 999988776553322 12224556678999999998 44 56899999877643
No 301
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=94.04 E-value=1.6 Score=42.02 Aligned_cols=100 Identities=13% Similarity=0.108 Sum_probs=63.2
Q ss_pred ccceEEEEecCCCEEEEEeCCCeEEEEeCCCCe-EeEEec----CCCceEEEEEccCC----CCEEEEEeC---C----C
Q 012367 309 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ-CLNVFD----HHNYVTCVQFNPID----DNYFISGSI---D----G 372 (465)
Q Consensus 309 ~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~-~l~~~~----h~~~V~~i~fsp~~----~~~l~sgs~---D----g 372 (465)
-.....|+|.|++.|+.+..++.|+++|. ++. .+..+. .......|+|+| + +.++++-+. + .
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~p-df~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHP-EFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCC-CCCcCCEEEEEEeccCCCCCcce
Confidence 34567899999988888888899999973 454 222211 234688999999 5 455554442 3 5
Q ss_pred cEEEEeCCCC-------e-EEe-cc-cCCCCeEEEEEeeCCCEEEEEE
Q 012367 373 KVRIWGVCEK-------R-VVD-WA-DVRDVISAICYIPDGKGFIVGS 410 (465)
Q Consensus 373 ~I~iwd~~~~-------~-~~~-~~-~~~~~V~sv~~spdg~~l~sgs 410 (465)
.|..|+.... + ++. +. ........++|.|||.+.++-+
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 6777776543 1 111 11 1122357799999998666643
No 302
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=93.99 E-value=0.8 Score=44.15 Aligned_cols=141 Identities=14% Similarity=0.115 Sum_probs=76.5
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcc
Q 012367 223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 302 (465)
Q Consensus 223 ~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (465)
..-+.|+|.|+|+++++ ..+|.|++++. .+. .... . .+
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~-~~~~-~-------------------------------------~~- 66 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGK-KLVA-S-------------------------------------FD- 66 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEECS-SCE-EEEE-E-------------------------------------CC-
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCc-eEee-c-------------------------------------cc-
Confidence 44689999999985554 56698988863 222 1000 0 00
Q ss_pred eeeeccccceEEEEecCC----CEEEEEeC----C----CeEEEEeCCCC-------eEe-EEec--CCCceEEEEEccC
Q 012367 303 QELHGHKGDVLDLAWSNS----NYLLSCSM----D----KTVRMWQVGCN-------QCL-NVFD--HHNYVTCVQFNPI 360 (465)
Q Consensus 303 ~~~~gh~~~V~~l~~s~~----~~l~s~s~----D----gtV~lWD~~~~-------~~l-~~~~--h~~~V~~i~fsp~ 360 (465)
...........|+++|+ +.|+.+.. + ..|..|+.... +.+ ..+. .......|+|.|
T Consensus 67 -v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p- 144 (354)
T 3a9g_A 67 -VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP- 144 (354)
T ss_dssp -CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-
T ss_pred -eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-
Confidence 00111245678899986 55544332 3 56777776543 111 1122 122356799999
Q ss_pred CCCEEEEEeC-------------CCcEEEEeCCCC---------eEEecccCCCCeEEEEEee-CCCEEEE
Q 012367 361 DDNYFISGSI-------------DGKVRIWGVCEK---------RVVDWADVRDVISAICYIP-DGKGFIV 408 (465)
Q Consensus 361 ~~~~l~sgs~-------------Dg~I~iwd~~~~---------~~~~~~~~~~~V~sv~~sp-dg~~l~s 408 (465)
++.++++.+. .|+|.-++.... ..+...++ .....++|+| +|..+++
T Consensus 145 DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~ 214 (354)
T 3a9g_A 145 DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVAT 214 (354)
T ss_dssp TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEE
T ss_pred CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEE
Confidence 8887777542 245555554332 01112223 2356799999 5655444
No 303
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=93.93 E-value=1.2 Score=43.88 Aligned_cols=107 Identities=15% Similarity=0.179 Sum_probs=75.9
Q ss_pred ceEEEEecCCCEEEEEeCCCeEEEEeCCCCe------------EeEEec-------CCCceEEEEEccC--CCCEEEEEe
Q 012367 311 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ------------CLNVFD-------HHNYVTCVQFNPI--DDNYFISGS 369 (465)
Q Consensus 311 ~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~------------~l~~~~-------h~~~V~~i~fsp~--~~~~l~sgs 369 (465)
.|..+..+|+|.+++-..+.+|.|-.+..+. ..+.+. ....|..+.|||. .+..|++-.
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt 146 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK 146 (452)
T ss_dssp TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE
T ss_pred ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe
Confidence 5677889999877777788899999886321 122332 2467999999994 345899999
Q ss_pred CCCcEEEEeCCCC--eEEec---------ccCCCCeEEEEEeeCCCEEEEEE--cCCcEEE
Q 012367 370 IDGKVRIWGVCEK--RVVDW---------ADVRDVISAICYIPDGKGFIVGS--ITGTCHF 417 (465)
Q Consensus 370 ~Dg~I~iwd~~~~--~~~~~---------~~~~~~V~sv~~spdg~~l~sgs--~dG~v~i 417 (465)
.|+.||+||+... ....+ ......|.++||.++|-.|.+.+ ..|-|+-
T Consensus 147 sD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 147 EDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp TTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred cCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 9999999999752 11111 11225689999999888788866 6676653
No 304
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=93.85 E-value=1.6 Score=41.88 Aligned_cols=98 Identities=13% Similarity=0.151 Sum_probs=62.1
Q ss_pred ccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeE--eEEec----CCCceEEEEEccCC----CCEEEEEeCC-----Cc
Q 012367 309 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQC--LNVFD----HHNYVTCVQFNPID----DNYFISGSID-----GK 373 (465)
Q Consensus 309 ~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~--l~~~~----h~~~V~~i~fsp~~----~~~l~sgs~D-----g~ 373 (465)
-.....|+|.|++.|+.+..++.|++++ ++.. +..+. .......|+|+| + +.++++-... +.
T Consensus 30 l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccE
Confidence 3456789999998777777889999998 4432 22111 234688999999 6 4444444432 56
Q ss_pred EEEEeCCCCe------EEe-cc---cCCCCeEEEEEeeCCCEEEEE
Q 012367 374 VRIWGVCEKR------VVD-WA---DVRDVISAICYIPDGKGFIVG 409 (465)
Q Consensus 374 I~iwd~~~~~------~~~-~~---~~~~~V~sv~~spdg~~l~sg 409 (465)
|..|+..... ++. +. ........++|.|||...++-
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence 8888876431 222 21 112235789999999766554
No 305
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=93.79 E-value=1 Score=43.40 Aligned_cols=30 Identities=27% Similarity=0.523 Sum_probs=22.1
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEecC
Q 012367 223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVT 252 (465)
Q Consensus 223 ~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~ 252 (465)
..-+.|+|.|+|++|+.+...|.|++++..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~ 47 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG 47 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC
Confidence 346899999999933444567989888743
No 306
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=93.77 E-value=0.48 Score=50.38 Aligned_cols=114 Identities=5% Similarity=-0.023 Sum_probs=67.3
Q ss_pred cceEEEEecCC-CEEEEEe-CC-CeEEEEeCCCCeEeEEe-c-CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeE
Q 012367 310 GDVLDLAWSNS-NYLLSCS-MD-KTVRMWQVGCNQCLNVF-D-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 384 (465)
Q Consensus 310 ~~V~~l~~s~~-~~l~s~s-~D-gtV~lWD~~~~~~l~~~-~-h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~ 384 (465)
.....|++.|. ++|+.+. .. +.|.++++.... ...+ . .-.....|+|+|..++++++-+..+.|.++++.....
T Consensus 496 ~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~ 574 (699)
T 1n7d_A 496 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR 574 (699)
T ss_dssp CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC
T ss_pred CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce
Confidence 34567888874 5444333 22 678777775332 2222 1 2335678999995566777767778899999875433
Q ss_pred Eeccc---CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 385 VDWAD---VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 385 ~~~~~---~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
..+.. .......|++..+ .++++....+.|..++..+++.
T Consensus 575 ~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 575 KTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSD 617 (699)
T ss_dssp EEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEE
T ss_pred EEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCc
Confidence 32221 2233445566543 3444555578899998765543
No 307
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=93.41 E-value=1.5 Score=44.31 Aligned_cols=137 Identities=12% Similarity=0.038 Sum_probs=83.3
Q ss_pred ceEEEEecCC--CEEEEE-eCCCeEEEEeCCCCeEeEEecC----CCceEEEEE-------ccCCCCEEEEEeCCC----
Q 012367 311 DVLDLAWSNS--NYLLSC-SMDKTVRMWQVGCNQCLNVFDH----HNYVTCVQF-------NPIDDNYFISGSIDG---- 372 (465)
Q Consensus 311 ~V~~l~~s~~--~~l~s~-s~DgtV~lWD~~~~~~l~~~~h----~~~V~~i~f-------sp~~~~~l~sgs~Dg---- 372 (465)
....|++.|. +.|+.+ ...+.|++.|+..+........ ......|+| ++ ++++++.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 4568899983 444444 4457799999998877665532 235899999 99 888666655443
Q ss_pred ---cEEEEeCCC-CeEE------ecccCCCCeEEEEEeeCCCEE-EEEEcCCcEEEEEec-------CCce-----e---
Q 012367 373 ---KVRIWGVCE-KRVV------DWADVRDVISAICYIPDGKGF-IVGSITGTCHFYKAS-------GNDL-----K--- 426 (465)
Q Consensus 373 ---~I~iwd~~~-~~~~------~~~~~~~~V~sv~~spdg~~l-~sgs~dG~v~iwd~~-------~~~~-----~--- 426 (465)
.|.+++... +... .+.. -.....++.+|++..| ++-..+|.|..||+. ++.+ +
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 266675433 2221 1111 2245678899955554 455567889999997 5554 0
Q ss_pred --eeEeeecCcccccCCceeeEEEeecCC
Q 012367 427 --LEKVDFHDRKKTSGNKITGIQGRISKN 453 (465)
Q Consensus 427 --~~~~~~~~~~~~~~~~It~~~f~p~gs 453 (465)
+.++.... ....-.++.|+|+|.
T Consensus 298 g~~~~l~~~~----~~~~p~~ia~~p~G~ 322 (496)
T 3kya_A 298 NTFKQLFTIA----DPSWEFQIFIHPTGK 322 (496)
T ss_dssp TTEEEEEECS----SSSCCEEEEECTTSS
T ss_pred cccceeEecC----CCCCceEEEEcCCCC
Confidence 12221111 123457899999987
No 308
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=93.41 E-value=4.6 Score=42.03 Aligned_cols=116 Identities=8% Similarity=-0.042 Sum_probs=74.5
Q ss_pred cceEEEEecC-CC-EEEEEeCCCeEEEEeCCCCeEeEEe-cCCCceEEEEEccCCCCEEEEEeC-CCcEEEEeCCCCeEE
Q 012367 310 GDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSI-DGKVRIWGVCEKRVV 385 (465)
Q Consensus 310 ~~V~~l~~s~-~~-~l~s~s~DgtV~lWD~~~~~~l~~~-~h~~~V~~i~fsp~~~~~l~sgs~-Dg~I~iwd~~~~~~~ 385 (465)
.....|++.+ ++ ++++-...+.|.+.++........+ ..-.....|++.|..+.++++-.. .+.|...++......
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~ 163 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF 163 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE
Confidence 3567788876 34 5556667789999999754433333 344467889999944555555422 356777776644332
Q ss_pred ec-ccCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCce
Q 012367 386 DW-ADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDL 425 (465)
Q Consensus 386 ~~-~~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~ 425 (465)
.+ ...-...+.|+++|+++.|+.+.. .+.|..+++.+...
T Consensus 164 ~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~ 205 (619)
T 3s94_A 164 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR 205 (619)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEE
T ss_pred EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCcc
Confidence 22 223456889999997776666654 57888888876544
No 309
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=93.02 E-value=3.7 Score=44.11 Aligned_cols=121 Identities=16% Similarity=0.024 Sum_probs=79.8
Q ss_pred eeccccceEEEEecC-CC-EEEEEeCCCeEEEEeCCCC----eEeEEec-CCCceEEEEEccCCCCEEEEEeCCCcEEEE
Q 012367 305 LHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCN----QCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377 (465)
Q Consensus 305 ~~gh~~~V~~l~~s~-~~-~l~s~s~DgtV~lWD~~~~----~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iw 377 (465)
+......+..|+|.+ .+ ++++-...+.|+.+++... .....+. .-.....|++.+..++++++-...+.|.+.
T Consensus 419 l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~ 498 (791)
T 3m0c_C 419 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 498 (791)
T ss_dssp EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEE
Confidence 333455677889987 45 4556666788999998753 2223333 344677899988556777777778899999
Q ss_pred eCCCCeEEecc-cCCCCeEEEEEeeCCCEEEEEEc-C-CcEEEEEecCCce
Q 012367 378 GVCEKRVVDWA-DVRDVISAICYIPDGKGFIVGSI-T-GTCHFYKASGNDL 425 (465)
Q Consensus 378 d~~~~~~~~~~-~~~~~V~sv~~spdg~~l~sgs~-d-G~v~iwd~~~~~~ 425 (465)
++.......+. ..-.....|+++|.+..|+.... . +.|...++.+...
T Consensus 499 ~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~ 549 (791)
T 3m0c_C 499 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 549 (791)
T ss_dssp ETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred eCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce
Confidence 99866544433 34456899999998666666553 2 6788888876544
No 310
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=92.96 E-value=6.2 Score=37.15 Aligned_cols=114 Identities=4% Similarity=-0.083 Sum_probs=69.5
Q ss_pred cceEEEEecCC-CEEEEEe--CCCeEEEEeCCCCeEeEEe--cCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeE
Q 012367 310 GDVLDLAWSNS-NYLLSCS--MDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 384 (465)
Q Consensus 310 ~~V~~l~~s~~-~~l~s~s--~DgtV~lWD~~~~~~l~~~--~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~ 384 (465)
.....+++.|. +.|+.+. ..+.|...++... ....+ ..-.....|+++|.+++++++-+..+.|..+|+.....
T Consensus 122 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~ 200 (318)
T 3sov_A 122 DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR 200 (318)
T ss_dssp SSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-CeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce
Confidence 34567888874 5555444 2577888887632 22333 22345789999994455555555678899999875332
Q ss_pred Eec-ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 385 VDW-ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 385 ~~~-~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
..+ .+.......+++. .+..+.+-...+.|..++..+++.
T Consensus 201 ~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 201 QAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp EEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred EEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCc
Confidence 222 2234456777775 334455555578898898865543
No 311
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=91.94 E-value=0.0065 Score=45.51 Aligned_cols=64 Identities=17% Similarity=0.311 Sum_probs=41.8
Q ss_pred cccccccCCccceeccccccccCcceeeeecccc-cCCChhhhcccCCCCccCCCchhhHHHHHHHHHHhhhccc
Q 012367 104 NCFDREMDSEANCMVDELEQDQMNECVVTLEGES-NGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNV 177 (465)
Q Consensus 104 ~~~~r~~d~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~s~~~~~l~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 177 (465)
..+.|+.++++++|++||...+..+.+.++..+. ....+... .+ ....++++|..++|++++.+
T Consensus 4 iLt~rQ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~------~k----y~gLLEKKWTSViRLQKKIm 68 (88)
T 1uuj_A 4 VLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELD------KK----YAGLLEKKWTSVIRLQKKVM 68 (88)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHH------HH----HTTHHHHHHTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhh------hh----hhhhhhhhHHHHHHHHHHHH
Confidence 4678999999999999999988888887777664 22111100 02 23456666666666665543
No 312
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=91.33 E-value=5.9 Score=39.45 Aligned_cols=103 Identities=13% Similarity=0.120 Sum_probs=61.2
Q ss_pred ccceEEEEecCCCEEEEEeCCC-eEEEEeCCCCeEe--EEec-------CCCceEEEEEccC---CCCEEEEEeC-----
Q 012367 309 KGDVLDLAWSNSNYLLSCSMDK-TVRMWQVGCNQCL--NVFD-------HHNYVTCVQFNPI---DDNYFISGSI----- 370 (465)
Q Consensus 309 ~~~V~~l~~s~~~~l~s~s~Dg-tV~lWD~~~~~~l--~~~~-------h~~~V~~i~fsp~---~~~~l~sgs~----- 370 (465)
-.....|+|.|++.|+.+...+ .|++++..++... ..+. ....+..|+|+|. ++.+.++-+.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 3456799999998666667765 7998887655432 2232 1345679999993 3444444332
Q ss_pred -------CCcEEEEeCCCC--e------EEe-cc-cCCCCeEEEEEeeCCCEEEEEEc
Q 012367 371 -------DGKVRIWGVCEK--R------VVD-WA-DVRDVISAICYIPDGKGFIVGSI 411 (465)
Q Consensus 371 -------Dg~I~iwd~~~~--~------~~~-~~-~~~~~V~sv~~spdg~~l~sgs~ 411 (465)
...|.-|+.... . ++. +. ........|+|.|||.+.++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 134555554321 1 111 11 12345789999999987766543
No 313
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=91.29 E-value=15 Score=38.05 Aligned_cols=115 Identities=8% Similarity=-0.024 Sum_probs=73.4
Q ss_pred ceEEEEecC-C-CEEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeC-CCcEEEEeCCCCeEEe
Q 012367 311 DVLDLAWSN-S-NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI-DGKVRIWGVCEKRVVD 386 (465)
Q Consensus 311 ~V~~l~~s~-~-~~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~-Dg~I~iwd~~~~~~~~ 386 (465)
.+..|++.. + +++++-+..+.|.+.++........+. .-.....|++.|..+.++++-.. ...|...++.......
T Consensus 393 ~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~ 472 (619)
T 3s94_A 393 HPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVV 472 (619)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred CcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEE
Confidence 445667664 3 456666677899999987543322222 34568999999945666665432 3567777765432222
Q ss_pred -cccCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCce
Q 012367 387 -WADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDL 425 (465)
Q Consensus 387 -~~~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~ 425 (465)
....-...+.|++++++..|+.+.. .+.|..+++.+...
T Consensus 473 l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~ 513 (619)
T 3s94_A 473 LVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGR 513 (619)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC
T ss_pred EEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCce
Confidence 2233457889999997777777665 57788888876554
No 314
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=91.20 E-value=9.6 Score=36.46 Aligned_cols=104 Identities=13% Similarity=0.012 Sum_probs=63.2
Q ss_pred ccccceEEEEecCCCEEEEEeC-CCeEEEEeCCCCeEe--EEe-----cCCCceEEEEEccC---CCCEEEEEe--CCCc
Q 012367 307 GHKGDVLDLAWSNSNYLLSCSM-DKTVRMWQVGCNQCL--NVF-----DHHNYVTCVQFNPI---DDNYFISGS--IDGK 373 (465)
Q Consensus 307 gh~~~V~~l~~s~~~~l~s~s~-DgtV~lWD~~~~~~l--~~~-----~h~~~V~~i~fsp~---~~~~l~sgs--~Dg~ 373 (465)
..-.....|+|.|++.++.+.. .|.|++++...+... ..+ ........|+|+|. ++.+.++-+ .++.
T Consensus 29 ~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 29 TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 3445678999999886666666 899999987665532 222 12446789999982 244444432 3445
Q ss_pred EEEEeCCC----------CeE-Ee-cc-cCCCCeEEEEEeeCCCEEEEEE
Q 012367 374 VRIWGVCE----------KRV-VD-WA-DVRDVISAICYIPDGKGFIVGS 410 (465)
Q Consensus 374 I~iwd~~~----------~~~-~~-~~-~~~~~V~sv~~spdg~~l~sgs 410 (465)
|.-|.+.. .+. +. +. ........|+|.|||.+.++.+
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 55565543 111 11 11 1233457799999998766644
No 315
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=91.18 E-value=16 Score=41.08 Aligned_cols=111 Identities=18% Similarity=0.236 Sum_probs=72.7
Q ss_pred cccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEE-ecCCCceEEEEEccCCCCEEEEEeCCCcEEEE--eCCCCeE
Q 012367 308 HKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV-FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW--GVCEKRV 384 (465)
Q Consensus 308 h~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~-~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iw--d~~~~~~ 384 (465)
..+.|++++--. |+|++|- .++|++|++...+.++. ..+...|..+.... .+++++.|..-..|.++ +....++
T Consensus 884 v~g~v~al~~~~-g~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~-~~~~I~vgD~~~Sv~~~~y~~~~~~L 960 (1158)
T 3ei3_A 884 VKGAVYSMVEFN-GKLLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKT-KGDFILVGDLMRSVLLLAYKPMEGNF 960 (1158)
T ss_dssp ESSCEEEEEEET-TEEEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEE-ETTEEEEEESSBCEEEEEEETTTTEE
T ss_pred cCCcCEEEeeeC-CEEEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEec-cCCEEEEEEhhheEEEEEEEcCCCeE
Confidence 357788887554 4555554 47899999987654442 12222233222222 57889999887777765 4445555
Q ss_pred Eecc--cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367 385 VDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASG 422 (465)
Q Consensus 385 ~~~~--~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~ 422 (465)
..+. ....+++++.+-.++ .++.+..+|++.++....
T Consensus 961 ~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 961 EEIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred EEEEeecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 5433 356678999887654 778899999999998764
No 316
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=90.82 E-value=2.8 Score=44.42 Aligned_cols=113 Identities=10% Similarity=-0.004 Sum_probs=70.7
Q ss_pred eEEEEecC-CC-EEEEEeCCCeEEEEeCCCCeEeEEec-CCCceEEEEEccCCCCEEEEEeCC-CcEEEEeCCCCeEEec
Q 012367 312 VLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID-GKVRIWGVCEKRVVDW 387 (465)
Q Consensus 312 V~~l~~s~-~~-~l~s~s~DgtV~lWD~~~~~~l~~~~-h~~~V~~i~fsp~~~~~l~sgs~D-g~I~iwd~~~~~~~~~ 387 (465)
...|++.+ .+ ++++-...+.|.+.++........+. .......|++.|..+.++++-... +.|.++++.......+
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l 534 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 534 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE
Confidence 44567663 33 55555667899999987554443333 234567889998455555554333 6788887754332222
Q ss_pred -ccCCCCeEEEEEeeCCCEEEEEE-cCCcEEEEEecCCc
Q 012367 388 -ADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGND 424 (465)
Q Consensus 388 -~~~~~~V~sv~~spdg~~l~sgs-~dG~v~iwd~~~~~ 424 (465)
...-...+.|+|+|++..|+.+. ..+.|..+++.+..
T Consensus 535 ~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~ 573 (699)
T 1n7d_A 535 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 573 (699)
T ss_dssp SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC
T ss_pred EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc
Confidence 22234577899999866655554 56789999987643
No 317
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=90.28 E-value=0.35 Score=46.44 Aligned_cols=109 Identities=8% Similarity=-0.001 Sum_probs=69.3
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeEeEEecCC--CceEEEEEc--cCCCCEEEEE-eCCCcEEEEeCCCCeEEeccc-----
Q 012367 320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCVQFN--PIDDNYFISG-SIDGKVRIWGVCEKRVVDWAD----- 389 (465)
Q Consensus 320 ~~~l~s~s~DgtV~lWD~~~~~~l~~~~h~--~~V~~i~fs--p~~~~~l~sg-s~Dg~I~iwd~~~~~~~~~~~----- 389 (465)
++.++.++.||.|.-.|..+|+.+..+... .++....-. +.++..++.. +.||.|..++..++.......
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 468999999999999999999999999654 233222111 1122333333 579999999998874432111
Q ss_pred CCCCeEE---EEE-e----eCCCEEEEEEcCCcEEEEEecCCceeee
Q 012367 390 VRDVISA---ICY-I----PDGKGFIVGSITGTCHFYKASGNDLKLE 428 (465)
Q Consensus 390 ~~~~V~s---v~~-s----pdg~~l~sgs~dG~v~iwd~~~~~~~~~ 428 (465)
...++.. ... . ..+..+++|+.+|++...|+.+++....
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~ 136 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISA 136 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEE
Confidence 1111111 000 0 0455789999999999999998887544
No 318
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=89.96 E-value=9.7 Score=36.54 Aligned_cols=100 Identities=9% Similarity=0.066 Sum_probs=59.6
Q ss_pred ceEEEEecCCCEEEEEe-------------CCCeEEEEeCCC--Ce--EeEEec-----CCCceEEEEEccC-CC--CEE
Q 012367 311 DVLDLAWSNSNYLLSCS-------------MDKTVRMWQVGC--NQ--CLNVFD-----HHNYVTCVQFNPI-DD--NYF 365 (465)
Q Consensus 311 ~V~~l~~s~~~~l~s~s-------------~DgtV~lWD~~~--~~--~l~~~~-----h~~~V~~i~fsp~-~~--~~l 365 (465)
..-+++..|++.+++++ .+|.|.++|..+ ++ .+...+ ..-....+.+.+. ++ +++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 44566777888777766 689999999873 22 222211 1225667776551 23 345
Q ss_pred EEEeC--CCcEEEEeCCC--CeEEe---ccc-CCCCeEEEEEeeCCCEEEEEE
Q 012367 366 ISGSI--DGKVRIWGVCE--KRVVD---WAD-VRDVISAICYIPDGKGFIVGS 410 (465)
Q Consensus 366 ~sgs~--Dg~I~iwd~~~--~~~~~---~~~-~~~~V~sv~~spdg~~l~sgs 410 (465)
++-.. +..|.+|++.. +.... ..+ .-...+.+.+.++|.+.++..
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~ 183 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATND 183 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEES
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCC
Confidence 55444 56788887753 32221 221 234689999999998777654
No 319
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=89.44 E-value=5.7 Score=37.97 Aligned_cols=99 Identities=18% Similarity=0.159 Sum_probs=58.8
Q ss_pred cceEEEEecCCCE-EEEEeCCCeEEEEeCCCCeEeEEe--------cCCCceEEEEEccC---CCCEEEEEeC-------
Q 012367 310 GDVLDLAWSNSNY-LLSCSMDKTVRMWQVGCNQCLNVF--------DHHNYVTCVQFNPI---DDNYFISGSI------- 370 (465)
Q Consensus 310 ~~V~~l~~s~~~~-l~s~s~DgtV~lWD~~~~~~l~~~--------~h~~~V~~i~fsp~---~~~~l~sgs~------- 370 (465)
.....|+|.|++. |+.+...+.|++++.. +.....+ ........|+|+|. ++.++++-+.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 4567899999886 8888888999999853 3322111 12345689999993 3444444333
Q ss_pred CCcEEEEeCCCC-------e-EEe-cc---cCCCCeEEEEEeeCCCEEEEE
Q 012367 371 DGKVRIWGVCEK-------R-VVD-WA---DVRDVISAICYIPDGKGFIVG 409 (465)
Q Consensus 371 Dg~I~iwd~~~~-------~-~~~-~~---~~~~~V~sv~~spdg~~l~sg 409 (465)
...|..|++... + ++. +. ........++|.|||.+.++-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 147 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIAL 147 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEE
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEE
Confidence 234666665432 1 111 11 112235679999999655554
No 320
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=89.04 E-value=23 Score=36.71 Aligned_cols=115 Identities=10% Similarity=0.053 Sum_probs=76.9
Q ss_pred cceEEEEecCC-C-EEEEEeCCCeEEEEeCCCCeEeEEe--cCCCceEEEEEccCCCCEEEEEeCCC--cEEEEeCCCCe
Q 012367 310 GDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDG--KVRIWGVCEKR 383 (465)
Q Consensus 310 ~~V~~l~~s~~-~-~l~s~s~DgtV~lWD~~~~~~l~~~--~h~~~V~~i~fsp~~~~~l~sgs~Dg--~I~iwd~~~~~ 383 (465)
..+..|++... + ++++-+..+.|.+.++. |+....+ ..-.....|++.|..+.++.+-.... .|...++....
T Consensus 389 ~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~ 467 (628)
T 4a0p_A 389 IQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTE 467 (628)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCS
T ss_pred CCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCC
Confidence 35667887753 3 56677778899999986 4444444 23457899999996676666654333 56666665433
Q ss_pred EEe-cccCCCCeEEEEEeeCCCEEEEEEc-CCcEEEEEecCCce
Q 012367 384 VVD-WADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDL 425 (465)
Q Consensus 384 ~~~-~~~~~~~V~sv~~spdg~~l~sgs~-dG~v~iwd~~~~~~ 425 (465)
... ....-...+.+++.++++.|+.+.. .+.|..+++.+...
T Consensus 468 ~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r 511 (628)
T 4a0p_A 468 REVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANR 511 (628)
T ss_dssp CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred cEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCce
Confidence 222 2223456799999998877777765 57888899876544
No 321
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=88.95 E-value=9.7 Score=34.85 Aligned_cols=104 Identities=10% Similarity=0.144 Sum_probs=60.3
Q ss_pred CCEEEEEeCC-----CeEEEEeCCCCeEeEEec--CCC-ceEEEEEccCCCCEEEEEeCC-----CcEEEEeCCCCeEEe
Q 012367 320 SNYLLSCSMD-----KTVRMWQVGCNQCLNVFD--HHN-YVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVVD 386 (465)
Q Consensus 320 ~~~l~s~s~D-----gtV~lWD~~~~~~l~~~~--h~~-~V~~i~fsp~~~~~l~sgs~D-----g~I~iwd~~~~~~~~ 386 (465)
+.+++.|+.+ ..+.+||+.+.+-...-. ... ...++.+ ++.+++.|+.+ ..+.+||+.+.+...
T Consensus 160 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 236 (301)
T 2vpj_A 160 GVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT 236 (301)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence 3455566544 458899998775433321 111 1223333 57788888764 468999999887655
Q ss_pred cccCCC-CeEEEEEeeCCCEEEEEEcC-----CcEEEEEecCCcee
Q 012367 387 WADVRD-VISAICYIPDGKGFIVGSIT-----GTCHFYKASGNDLK 426 (465)
Q Consensus 387 ~~~~~~-~V~sv~~spdg~~l~sgs~d-----G~v~iwd~~~~~~~ 426 (465)
...... .....+..-+++.++.|+.+ ..+.+||+.+++..
T Consensus 237 ~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 237 VTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp ECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred CCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 332211 11111222377788888765 35778888877654
No 322
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=88.11 E-value=6.9 Score=35.96 Aligned_cols=94 Identities=15% Similarity=0.229 Sum_probs=55.0
Q ss_pred CeEEEEeCCCCeEeEEec--CCC-ceEEEEEccCCCCEEEEEeCC-----CcEEEEeCCCCeEEecccCCCC-eEEEEEe
Q 012367 330 KTVRMWQVGCNQCLNVFD--HHN-YVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVVDWADVRDV-ISAICYI 400 (465)
Q Consensus 330 gtV~lWD~~~~~~l~~~~--h~~-~V~~i~fsp~~~~~l~sgs~D-----g~I~iwd~~~~~~~~~~~~~~~-V~sv~~s 400 (465)
..+.+||+.+.+-...-. ... ...++.+ ++.+++.|+.+ ..+.+||+.+.+.......... ....+..
T Consensus 173 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~ 249 (302)
T 2xn4_A 173 STVECYNATTNEWTYIAEMSTRRSGAGVGVL---NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA 249 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred cEEEEEeCCCCcEEECCCCccccccccEEEE---CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE
Confidence 358889988775333221 111 1122333 67788888765 4689999988776543322111 1111222
Q ss_pred eCCCEEEEEEcCC-----cEEEEEecCCcee
Q 012367 401 PDGKGFIVGSITG-----TCHFYKASGNDLK 426 (465)
Q Consensus 401 pdg~~l~sgs~dG-----~v~iwd~~~~~~~ 426 (465)
-+++.++.|+.++ .+.+||+.+++..
T Consensus 250 ~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 250 VNGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp ETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred ECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 3777888888654 4889999877553
No 323
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=88.00 E-value=29 Score=38.00 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=30.3
Q ss_pred ceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe
Q 012367 351 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD 386 (465)
Q Consensus 351 ~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~ 386 (465)
.+.+++..+ +..++++-+.|+++|||++.+++++.
T Consensus 237 ~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t~~~v~ 271 (950)
T 4gq2_M 237 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVE 271 (950)
T ss_dssp CEEEEEEET-TTTEEEEEETTCEEEEEETTTTEEEE
T ss_pred eEEEEeecC-CCcEEEEEECCCEEEEEECCCCCeEe
Confidence 467777777 88899999999999999999998775
No 324
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=87.74 E-value=30 Score=36.46 Aligned_cols=188 Identities=9% Similarity=0.135 Sum_probs=99.6
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeec--C
Q 012367 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE--E 299 (465)
Q Consensus 222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 299 (465)
...|.++....+| .|..|+.+| +..||..+..... ..... ......+. . ......+.....++.+. .
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~----~~~~~--~~~i~~i~--~-~~g~lWigt~~Gl~~~~~~~ 130 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ----PETDF--PTDVRTMA--L-QGDTLWLGALNGLYTYQLQS 130 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC----CSCCC--CSCEEEEE--E-ETTEEEEEETTEEEEEETTT
T ss_pred CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC----cccCC--CceEEEEE--e-cCCcEEEEcCCcceeEeCCC
Confidence 3468998887777 555666666 7788987654322 00000 00000010 0 11111111122232221 1
Q ss_pred Ccceeee-----ccccceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEe-c-----CCCceEEEEEccCCCCEEEEE
Q 012367 300 SPLQELH-----GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-D-----HHNYVTCVQFNPIDDNYFISG 368 (465)
Q Consensus 300 ~~~~~~~-----gh~~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~-~-----h~~~V~~i~fsp~~~~~l~sg 368 (465)
..+..+. .....|.++...+++.|..++.. -|..+|..++...... . ....|.++...+ ++..|-.|
T Consensus 131 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~~~~lWig 208 (758)
T 3ott_A 131 RKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDT-TRQCVWIG 208 (758)
T ss_dssp CCEEEECHHHHCCSCSCEEEEEECTTCCEEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEET-TTTEEEEE
T ss_pred CeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEEC-CCCEEEEE
Confidence 2222221 11246788887777766666655 4778888776543221 1 122488888876 55544444
Q ss_pred eCCCcEEEEeCCCCeEEeccc-CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 369 SIDGKVRIWGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 369 s~Dg~I~iwd~~~~~~~~~~~-~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
.. +-|..+|..+++...... ....|.++...++|.+ .+|+.+| +.+|+..+..+
T Consensus 209 t~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-WigT~~G-l~~~~~~~~~~ 263 (758)
T 3ott_A 209 TE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDL-LAGTDNG-LYVYHNDTTPL 263 (758)
T ss_dssp EE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCE-EEEETTE-EEEECCTTSCC
T ss_pred EC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCE-EEEeCCc-eeEEecCCCcE
Confidence 43 458889988776544322 2345788887777754 4556554 67788766544
No 325
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=85.37 E-value=16 Score=34.81 Aligned_cols=143 Identities=8% Similarity=-0.018 Sum_probs=81.8
Q ss_pred CEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccceEE
Q 012367 235 RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLD 314 (465)
Q Consensus 235 ~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~ 314 (465)
.+++.++.||.|.-.|..+++......... ..+.....+...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~----------------------------------~~p~~~~~~~~~---- 52 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPEN----------------------------------FQPLIEIQEPSR---- 52 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGG----------------------------------SCCSEECCCSCT----
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCc----------------------------------cCCcEEecCCcc----
Confidence 378899999999999998887765543210 001111111100
Q ss_pred EEecCCCEEEEE--eCCCeEEEEeCCCCeEeEEec-----CCCceEEEEEcc-C-------CCCEEEEEeCCCcEEEEeC
Q 012367 315 LAWSNSNYLLSC--SMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNP-I-------DDNYFISGSIDGKVRIWGV 379 (465)
Q Consensus 315 l~~s~~~~l~s~--s~DgtV~lWD~~~~~~l~~~~-----h~~~V~~i~fsp-~-------~~~~l~sgs~Dg~I~iwd~ 379 (465)
..++.++.+ +.||.|..++..+|.....+. ...++.. .=.| . .+..+++|+.++.+...|+
T Consensus 53 ---~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~ 128 (339)
T 2be1_A 53 ---LETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINM 128 (339)
T ss_dssp ---TTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEET
T ss_pred ---ccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEEC
Confidence 023334433 589999999998886555543 2222221 1111 0 3567889999999999999
Q ss_pred CCCeEEecccCCCCe--------EEEEEe-----eCCCEEEEEEcCCcEEEEE
Q 012367 380 CEKRVVDWADVRDVI--------SAICYI-----PDGKGFIVGSITGTCHFYK 419 (465)
Q Consensus 380 ~~~~~~~~~~~~~~V--------~sv~~s-----pdg~~l~sgs~dG~v~iwd 419 (465)
.+|+++......... .+.... -.+..++.|..+..+.+.+
T Consensus 129 ~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~ 181 (339)
T 2be1_A 129 LNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS 181 (339)
T ss_dssp TTCCEEEEESTTCBCC--------------------CCEEEEEEEEEECEECC
T ss_pred CCCcEEEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC
Confidence 999988644332211 011110 1235677777777777766
No 326
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=84.99 E-value=14 Score=35.09 Aligned_cols=119 Identities=10% Similarity=0.106 Sum_probs=80.8
Q ss_pred CCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEE
Q 012367 328 MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI 407 (465)
Q Consensus 328 ~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~ 407 (465)
.+..|.|-|+..+......... --+.-.|| ..+.+|--. ..++.|||+.++..+........|.--.|-.+. .|+
T Consensus 47 ~~~~VvIiDl~n~~~~~Rrpi~--AdsAIMnP-~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~-~L~ 121 (365)
T 2xzh_A 47 EQAQVVIIDMNDPSNPIRRPIS--ADSAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN-TVA 121 (365)
T ss_dssp TEEEEEEEETTSTTSCEEEECC--CSEEEECS-SSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSSS-EEE
T ss_pred CCCEEEEEECCCCCCccccccc--cceeeeCC-CccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCCC-eEE
Confidence 3347888888775543222211 12344588 778777766 789999999999888877777888888887554 444
Q ss_pred EEEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc
Q 012367 408 VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY 454 (465)
Q Consensus 408 sgs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~ 454 (465)
..+ +..|+-|++.+...+.+.++.+... ....|.+.+..++..+
T Consensus 122 lVT-~taVyHWs~~~~s~P~kvFdR~~~L--~~~QIInY~~d~~~kW 165 (365)
T 2xzh_A 122 LVT-DNAVYHWSMEGESQPVKMFDRHSSL--AGCQIINYRTDAKQKW 165 (365)
T ss_dssp EEE-SSEEEEEESSTTCCCEEEEECCGGG--TTCEEEEEEECTTSCE
T ss_pred EEc-CCcEEEEcccCCCCCceeeecchhc--ccceEEEEEECCCCCE
Confidence 444 4478999998866666666655543 2467777777776554
No 327
>2rr3_B OSBP, oxysterol-binding protein 1; lipid transport, transport, protein-peptide complex, major S protein domain, protein binding; NMR {Homo sapiens}
Probab=84.55 E-value=0.37 Score=30.19 Aligned_cols=18 Identities=33% Similarity=0.650 Sum_probs=15.1
Q ss_pred CCCCCccceeeecccccc
Q 012367 3 SSDEGVDDVFFDSTDCLS 20 (465)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (465)
.|||+||-+||||.+-|.
T Consensus 12 ~SdEDed~EfFDA~efIT 29 (47)
T 2rr3_B 12 MSDEDDENEFFDAPEIIT 29 (47)
T ss_dssp SCCCCCSSCCBCCCSSCS
T ss_pred ccccccccccccccceeE
Confidence 368899999999988665
No 328
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=82.42 E-value=5.5 Score=40.64 Aligned_cols=117 Identities=17% Similarity=0.152 Sum_probs=78.2
Q ss_pred ceEEEEecCCC--EEEEEeCCCeEEEEeCCCC------e-------EeEEecCCCceEEEEEccCCCCEEEEEeCCCcEE
Q 012367 311 DVLDLAWSNSN--YLLSCSMDKTVRMWQVGCN------Q-------CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVR 375 (465)
Q Consensus 311 ~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~------~-------~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~ 375 (465)
....+..+|+| .++++-.+.+|.++|+... + ......-.-.....+|.+ +|+-..|-..|..|.
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~-~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDG-RGNAYTTLFIDSQVV 402 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECC-CCceEeeeeecceEE
Confidence 33456677887 4445566889999998731 1 122333445678899999 886667777899999
Q ss_pred EEeCCCC----------eEEecccCCCCeEEEEE------eeCCCEEEEEEc---CC----------cEEEEEecCCcee
Q 012367 376 IWGVCEK----------RVVDWADVRDVISAICY------IPDGKGFIVGSI---TG----------TCHFYKASGNDLK 426 (465)
Q Consensus 376 iwd~~~~----------~~~~~~~~~~~V~sv~~------spdg~~l~sgs~---dG----------~v~iwd~~~~~~~ 426 (465)
-|++... .++......-.+-.+.- .|||++|++... |. +-.++|+++.+++
T Consensus 403 kWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGdkM~ 482 (638)
T 3sbq_A 403 KWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGDEMK 482 (638)
T ss_dssp EEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSSSCE
T ss_pred EEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCCceE
Confidence 9999543 34443333334444443 579999999873 43 3478999888776
Q ss_pred ee
Q 012367 427 LE 428 (465)
Q Consensus 427 ~~ 428 (465)
+.
T Consensus 483 lv 484 (638)
T 3sbq_A 483 LV 484 (638)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 329
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=81.52 E-value=33 Score=37.61 Aligned_cols=37 Identities=19% Similarity=0.523 Sum_probs=31.0
Q ss_pred ceEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEec
Q 012367 311 DVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFD 347 (465)
Q Consensus 311 ~V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~ 347 (465)
.|.+++..++ .++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 4566666665 589999999999999999999998864
No 330
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=81.40 E-value=14 Score=38.86 Aligned_cols=37 Identities=11% Similarity=0.326 Sum_probs=30.0
Q ss_pred ceEEEEecCCCEEEEEeCCCeEEEEeCCCCeEeEEecC
Q 012367 311 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDH 348 (465)
Q Consensus 311 ~V~~l~~s~~~~l~s~s~DgtV~lWD~~~~~~l~~~~h 348 (465)
.|.++.+ ++.++++-+.|+++|+|++.+++++.+..-
T Consensus 223 ~Is~~~~-~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF-HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE-TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc-CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4554443 467999999999999999999999888754
No 331
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=81.19 E-value=32 Score=31.32 Aligned_cols=94 Identities=7% Similarity=0.116 Sum_probs=56.1
Q ss_pred CeEEEEeCCCCeEeEEec--CCC-ceEEEEEccCCCCEEEEEeCC-----CcEEEEeCCCCeEEecccCC---CCeEEEE
Q 012367 330 KTVRMWQVGCNQCLNVFD--HHN-YVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVVDWADVR---DVISAIC 398 (465)
Q Consensus 330 gtV~lWD~~~~~~l~~~~--h~~-~V~~i~fsp~~~~~l~sgs~D-----g~I~iwd~~~~~~~~~~~~~---~~V~sv~ 398 (465)
..+.+||+.+.+-...-. ... .-.++.+ ++.+++.|+.+ ..+.+||+.+.+........ ....++.
T Consensus 169 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 245 (306)
T 3ii7_A 169 NSCEVYDPATETWTELCPMIEARKNHGLVFV---KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA 245 (306)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEE
T ss_pred ceEEEeCCCCCeEEECCCccchhhcceEEEE---CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEE
Confidence 458899998875333222 111 1122222 56777877754 45889999888765543221 1222232
Q ss_pred EeeCCCEEEEEEcC-----CcEEEEEecCCceeee
Q 012367 399 YIPDGKGFIVGSIT-----GTCHFYKASGNDLKLE 428 (465)
Q Consensus 399 ~spdg~~l~sgs~d-----G~v~iwd~~~~~~~~~ 428 (465)
+ +++.++.|+.+ ..+.+||+.+++....
T Consensus 246 ~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~ 278 (306)
T 3ii7_A 246 V--GSIVYVLAGFQGVGRLGHILEYNTETDKWVAN 278 (306)
T ss_dssp E--TTEEEEEECBCSSSBCCEEEEEETTTTEEEEE
T ss_pred E--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeC
Confidence 3 77788888854 5688899988766543
No 332
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=79.51 E-value=39 Score=33.42 Aligned_cols=118 Identities=10% Similarity=0.113 Sum_probs=80.0
Q ss_pred CCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEecccCCCCeEEEEEeeCCCEEEE
Q 012367 329 DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIV 408 (465)
Q Consensus 329 DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~V~sv~~spdg~~l~s 408 (465)
+..|.|-|+..+......... --+.-.|| ..+.++--. ..++.|||+.+...+........|.--.|-.+. .|+.
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~--AdsAIMnP-~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~-~l~l 121 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS--ADSAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN-TVAL 121 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC--CSEEEECS-SSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETT-EEEE
T ss_pred CCeEEEEECCCCCcceecccc--cceeeeCC-CCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCC-eEEE
Confidence 346888888775543222211 12455788 777777665 789999999999888776767778888887654 4444
Q ss_pred EEcCCcEEEEEecCCceeeeEeeecCcccccCCceeeEEEeecCCc
Q 012367 409 GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQGRISKNY 454 (465)
Q Consensus 409 gs~dG~v~iwd~~~~~~~~~~~~~~~~~~~~~~~It~~~f~p~gs~ 454 (465)
.+ +..|+-|++.+...+.+.++.+... ....|.+....++..+
T Consensus 122 VT-~taVyHWsi~~~s~P~kvFdR~~~L--~~~QIInY~~d~~~kW 164 (494)
T 1bpo_A 122 VT-DNAVYHWSMEGESQPVKMFDRHSSL--AGCQIINYRTDAKQKW 164 (494)
T ss_dssp EC-SSEEEEEESSSSCCCEEEEECCGGG--TTCEEEEEEECTTSSE
T ss_pred Ec-CCeeEEecccCCCCchhheecchhc--ccceEEEEEECCCCCe
Confidence 44 4578999998866666666655543 3467888777776554
No 333
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=77.38 E-value=73 Score=33.35 Aligned_cols=108 Identities=19% Similarity=0.207 Sum_probs=63.0
Q ss_pred CCCEEEEEeCCC--eEEEEeCCCCeEeEEec------CCCceEEEEEccCCCCEEEEEeCC-------CcEEEEeCCCCe
Q 012367 319 NSNYLLSCSMDK--TVRMWQVGCNQCLNVFD------HHNYVTCVQFNPIDDNYFISGSID-------GKVRIWGVCEKR 383 (465)
Q Consensus 319 ~~~~l~s~s~Dg--tV~lWD~~~~~~l~~~~------h~~~V~~i~fsp~~~~~l~sgs~D-------g~I~iwd~~~~~ 383 (465)
.+.+++.|+.++ .+.+||+.+..-...-. ......++.+...++.+++.|+.+ +.+.+||+.+..
T Consensus 500 ~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 500 DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 445667776654 69999998775322211 111223355555236788888762 458899998776
Q ss_pred ------EEeccc---CCCCeEEEEEeeCCCEEEEEEcC--------CcEEEEEecCCcee
Q 012367 384 ------VVDWAD---VRDVISAICYIPDGKGFIVGSIT--------GTCHFYKASGNDLK 426 (465)
Q Consensus 384 ------~~~~~~---~~~~V~sv~~spdg~~l~sgs~d--------G~v~iwd~~~~~~~ 426 (465)
...... ....-.+++...+++.++.|+.+ ..+.+||+.+++..
T Consensus 580 w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 580 ATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp SSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred cccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 222211 11111233344447788888753 46899999887664
No 334
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=74.76 E-value=88 Score=32.83 Aligned_cols=113 Identities=8% Similarity=-0.015 Sum_probs=72.9
Q ss_pred cceEEEEecCCCEEEEEeCCCeEEEEeCCC------CeEe--EEec-----CCCceEEEEEccCCCCEEEEEeCCCcEEE
Q 012367 310 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGC------NQCL--NVFD-----HHNYVTCVQFNPIDDNYFISGSIDGKVRI 376 (465)
Q Consensus 310 ~~V~~l~~s~~~~l~s~s~DgtV~lWD~~~------~~~l--~~~~-----h~~~V~~i~fsp~~~~~l~sgs~Dg~I~i 376 (465)
..|.++...+++.|..|+..+-|.++|..+ .... ..+. ....|.++...+ ++++.+.++..+-|..
T Consensus 419 ~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~ 497 (758)
T 3ott_A 419 NWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNVWVLLYNNKGIDK 497 (758)
T ss_dssp SSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCEEEEETTCSSEEE
T ss_pred ceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcC-CCCEEEEccCCCCcEE
Confidence 457888877778788888777788888542 1111 1221 234689999888 7887764444556888
Q ss_pred EeCCCCeEEeccc----CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 377 WGVCEKRVVDWAD----VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 377 wd~~~~~~~~~~~----~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
+|..+++...+.. ....+.++....+|... .|+..| +..|+..+.+.
T Consensus 498 ~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lW-igt~~G-l~~~~~~~~~~ 548 (758)
T 3ott_A 498 INPRTREVTKLFADELTGEKSPNYLLCDEDGLLW-VGFHGG-VMRINPKDESQ 548 (758)
T ss_dssp EETTTTEEEEECTTTSCGGGCEEEEEECTTSCEE-EEETTE-EEEECC--CCC
T ss_pred EeCCCCceEEecCCCcCCCcccceEEECCCCCEE-EEecCc-eEEEecCCCce
Confidence 9998887665421 12457888877777655 455555 66787765543
No 335
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=72.69 E-value=67 Score=30.53 Aligned_cols=131 Identities=10% Similarity=0.188 Sum_probs=86.5
Q ss_pred eeeecCCcceeeeccccceEEEEecCC----CEEEEEeC---CCeEEEEeCCCC---e------EeEEe-c---CCCceE
Q 012367 294 VFQIEESPLQELHGHKGDVLDLAWSNS----NYLLSCSM---DKTVRMWQVGCN---Q------CLNVF-D---HHNYVT 353 (465)
Q Consensus 294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~----~~l~s~s~---DgtV~lWD~~~~---~------~l~~~-~---h~~~V~ 353 (465)
+|..+.+.-+.+.||.+.-..+....+ .+++.+.. .+.+.|-++... . .+..+ . ..+...
T Consensus 184 LYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPV 263 (365)
T 2xzh_A 184 LYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV 263 (365)
T ss_dssp EEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEE
T ss_pred EEeecccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceE
Confidence 455556666777888776655554321 23333333 257888887432 1 11222 1 345667
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEeccc-CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 354 CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 354 ~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
+++.++ .-..+..-..-|.|++||+.++.++.... ..+.|-..+.+.+...++.-..+|.|.--.++..++
T Consensus 264 amqvs~-kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~i 335 (365)
T 2xzh_A 264 AMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 335 (365)
T ss_dssp EEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTH
T ss_pred EEEecc-cCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECcccE
Confidence 888888 66677777889999999999998886443 445666666666666788888999988888877665
No 336
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=72.24 E-value=50 Score=37.81 Aligned_cols=187 Identities=16% Similarity=0.227 Sum_probs=95.2
Q ss_pred ECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEecc-CCCCceeEecCCceeee----cCCccee
Q 012367 230 FSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGK-KKSSHVPVVIPDEVFQI----EESPLQE 304 (465)
Q Consensus 230 fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~ 304 (465)
.+|..+.+|-=. ..++.|+|+.+.........+.. +.+|. -......++....++.+ ...|.+.
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~----------VvfWkWis~~~l~lVT~~aVyHW~~~~~s~P~k~ 141 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD----------VTFWKWISLNTVALVTDNAVYHWSMEGESQPVKM 141 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhcccccCCC----------ceEEEecCCCeeEEEcCCeEEEeccCCCCccHHH
Confidence 455555555443 57899999876443332222211 11111 11111222222333322 2356665
Q ss_pred eecc----ccceEEEEecCCC--EEEEEe------CCCeEEEEeCCCCeEeEEecCCCceEEEEE--ccCCCCEEEEEeC
Q 012367 305 LHGH----KGDVLDLAWSNSN--YLLSCS------MDKTVRMWQVGCNQCLNVFDHHNYVTCVQF--NPIDDNYFISGSI 370 (465)
Q Consensus 305 ~~gh----~~~V~~l~~s~~~--~l~s~s------~DgtV~lWD~~~~~~l~~~~h~~~V~~i~f--sp~~~~~l~sgs~ 370 (465)
+.-| ...|..-..+++. .+++|- ..|.+.+|.+..+.....-+|...-..+.. ++.....|+.+..
T Consensus 142 fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~ 221 (1630)
T 1xi4_A 142 FDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVR 221 (1630)
T ss_pred HhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEe
Confidence 5555 3566666666664 333332 457889998876543222233222111111 1101112222211
Q ss_pred ---CCcEEEEeCCCC---------eEEe--cc--cCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCceee
Q 012367 371 ---DGKVRIWGVCEK---------RVVD--WA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL 427 (465)
Q Consensus 371 ---Dg~I~iwd~~~~---------~~~~--~~--~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~~~ 427 (465)
.++++|-++... +.+. +. ...+-..++..++.-..+..-+.-|.+++||+.++...+
T Consensus 222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred cCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhh
Confidence 368999988432 1111 11 123445677778877789999999999999999887643
No 337
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=70.73 E-value=63 Score=29.42 Aligned_cols=104 Identities=12% Similarity=0.152 Sum_probs=59.9
Q ss_pred CCCEEEEEeCC-----CeEEEEeCCCCeEeEEec--CCC-ceEEEEEccCCCCEEEEEeCC-----CcEEEEeCCCCeEE
Q 012367 319 NSNYLLSCSMD-----KTVRMWQVGCNQCLNVFD--HHN-YVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVV 385 (465)
Q Consensus 319 ~~~~l~s~s~D-----gtV~lWD~~~~~~l~~~~--h~~-~V~~i~fsp~~~~~l~sgs~D-----g~I~iwd~~~~~~~ 385 (465)
.+.+++.|+.+ ..+.+||+.+.+-...-. ... ...++.+ ++.+++.|+.+ ..+.+||+.+.+..
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETETWT 244 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence 33455566554 458899988765322211 111 1223333 57788888765 56999999888765
Q ss_pred ecccCCCC--eEEEEEeeCCCEEEEEEcC-----CcEEEEEecCCcee
Q 012367 386 DWADVRDV--ISAICYIPDGKGFIVGSIT-----GTCHFYKASGNDLK 426 (465)
Q Consensus 386 ~~~~~~~~--V~sv~~spdg~~l~sgs~d-----G~v~iwd~~~~~~~ 426 (465)
........ -.+++. -+++.++.|+.+ ..+.+||+.+++..
T Consensus 245 ~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 245 FVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp ECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred ECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence 54322211 112222 367788888754 45778888877554
No 338
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=70.72 E-value=19 Score=32.91 Aligned_cols=104 Identities=13% Similarity=0.194 Sum_probs=58.9
Q ss_pred CCCEEEEEeCC-----CeEEEEeCCCCeEeEEec--CCC-ceEEEEEccCCCCEEEEEeCC-------CcEEEEeCCCCe
Q 012367 319 NSNYLLSCSMD-----KTVRMWQVGCNQCLNVFD--HHN-YVTCVQFNPIDDNYFISGSID-------GKVRIWGVCEKR 383 (465)
Q Consensus 319 ~~~~l~s~s~D-----gtV~lWD~~~~~~l~~~~--h~~-~V~~i~fsp~~~~~l~sgs~D-------g~I~iwd~~~~~ 383 (465)
.+.+++.|+.+ ..+.+||+.+.+-...-. ... ...++.+ ++.+++.|+.+ ..+.+||+.+.+
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 184 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV---GGLLYAVGGYDVASRQCLSTVECYNATTNE 184 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE---CCEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence 33455556544 357888988775433321 111 1122222 56777777653 358899998876
Q ss_pred EEecccCCCC--eEEEEEeeCCCEEEEEEcC-----CcEEEEEecCCcee
Q 012367 384 VVDWADVRDV--ISAICYIPDGKGFIVGSIT-----GTCHFYKASGNDLK 426 (465)
Q Consensus 384 ~~~~~~~~~~--V~sv~~spdg~~l~sgs~d-----G~v~iwd~~~~~~~ 426 (465)
.......... -.+++ .-+++.++.|+.+ ..+.+||+.+++..
T Consensus 185 W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 233 (302)
T 2xn4_A 185 WTYIAEMSTRRSGAGVG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWR 233 (302)
T ss_dssp EEEECCCSSCCBSCEEE-EETTEEEEECCBSSSSBCCCEEEEETTTTEEE
T ss_pred EEECCCCccccccccEE-EECCEEEEECCCCCCcccceEEEEeCCCCCEe
Confidence 5543221111 11222 2367788888765 36889998877654
No 339
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=68.07 E-value=32 Score=31.62 Aligned_cols=105 Identities=5% Similarity=0.078 Sum_probs=59.2
Q ss_pred CCCEEEEEeC-C-----CeEEEEeCCCCeEeEEec--CCC-ceEEEEEccCCCCEEEEEeCCC-----cEEEEeCCCCeE
Q 012367 319 NSNYLLSCSM-D-----KTVRMWQVGCNQCLNVFD--HHN-YVTCVQFNPIDDNYFISGSIDG-----KVRIWGVCEKRV 384 (465)
Q Consensus 319 ~~~~l~s~s~-D-----gtV~lWD~~~~~~l~~~~--h~~-~V~~i~fsp~~~~~l~sgs~Dg-----~I~iwd~~~~~~ 384 (465)
.+.+++.|+. + ..+.+||+.+.+-...-. ... ...++.+ ++.+++.|+.++ .+.+||+.+.+.
T Consensus 148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 224 (315)
T 4asc_A 148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH---DGRIIVAAGVTDTGLTSSAEVYSITDNKW 224 (315)
T ss_dssp TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEEEEECSSSEEEEEEEEETTTTEE
T ss_pred CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE---CCEEEEEeccCCCCccceEEEEECCCCeE
Confidence 3445556655 2 468999998764322211 111 1122333 677888888754 588999988866
Q ss_pred EecccCCCC-eEEEEEeeCCCEEEEEEcCC--------------cEEEEEecCCcee
Q 012367 385 VDWADVRDV-ISAICYIPDGKGFIVGSITG--------------TCHFYKASGNDLK 426 (465)
Q Consensus 385 ~~~~~~~~~-V~sv~~spdg~~l~sgs~dG--------------~v~iwd~~~~~~~ 426 (465)
......... ....+..-+++.++.|+.++ .+.+||+.+++-.
T Consensus 225 ~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 281 (315)
T 4asc_A 225 APFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWE 281 (315)
T ss_dssp EEECCCSSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEE
T ss_pred EECCCCCCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhh
Confidence 554322111 11112223677888887643 3678888777554
No 340
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=67.96 E-value=73 Score=29.08 Aligned_cols=94 Identities=9% Similarity=0.112 Sum_probs=53.1
Q ss_pred CeEEEEeCCCCeEeEEec--CCC-ceEEEEEccCCCCEEEEEeCC-----CcEEEEeCCCCeEEecccCCCC-eEEEEEe
Q 012367 330 KTVRMWQVGCNQCLNVFD--HHN-YVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVVDWADVRDV-ISAICYI 400 (465)
Q Consensus 330 gtV~lWD~~~~~~l~~~~--h~~-~V~~i~fsp~~~~~l~sgs~D-----g~I~iwd~~~~~~~~~~~~~~~-V~sv~~s 400 (465)
..+.+||+.+.+-...-. ... ...++.+ ++.+++.|+.+ ..+.+||+.+.+.......... ....+..
T Consensus 175 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 251 (318)
T 2woz_A 175 NRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH---KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS 251 (318)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE
T ss_pred ceEEEEcCCCCEEEECCCCCCCcccceEEEE---CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE
Confidence 358899998775333221 111 1122333 57788888754 3577899988766553322111 1111223
Q ss_pred eCCCEEEEEEcC--------------CcEEEEEecCCcee
Q 012367 401 PDGKGFIVGSIT--------------GTCHFYKASGNDLK 426 (465)
Q Consensus 401 pdg~~l~sgs~d--------------G~v~iwd~~~~~~~ 426 (465)
-+++.++.|+.+ ..+.+||+.+++-.
T Consensus 252 ~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 291 (318)
T 2woz_A 252 LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWA 291 (318)
T ss_dssp ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEE
T ss_pred ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEeh
Confidence 367788887754 35778888876553
No 341
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=67.90 E-value=33 Score=31.25 Aligned_cols=104 Identities=9% Similarity=0.113 Sum_probs=58.9
Q ss_pred CCEEEEEeCC----CeEEEEeCCCCeEeEEec--CCC-ceEEEEEccCCCCEEEEEeCC------CcEEEEeCCCCeEEe
Q 012367 320 SNYLLSCSMD----KTVRMWQVGCNQCLNVFD--HHN-YVTCVQFNPIDDNYFISGSID------GKVRIWGVCEKRVVD 386 (465)
Q Consensus 320 ~~~l~s~s~D----gtV~lWD~~~~~~l~~~~--h~~-~V~~i~fsp~~~~~l~sgs~D------g~I~iwd~~~~~~~~ 386 (465)
+.+++.|+.+ ..+.+||+.+++-...-. ... ...++.+ ++.+++.|+.+ ..+.+||..+.....
T Consensus 56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 56 NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 3355555544 568889988775433322 111 1122223 67788888765 468999998876554
Q ss_pred cccCCCC-eEEEEEeeCCCEEEEEEc---------CCcEEEEEecCCcee
Q 012367 387 WADVRDV-ISAICYIPDGKGFIVGSI---------TGTCHFYKASGNDLK 426 (465)
Q Consensus 387 ~~~~~~~-V~sv~~spdg~~l~sgs~---------dG~v~iwd~~~~~~~ 426 (465)
....... ....+..-+++.++.|+. -..+.+||+.+++..
T Consensus 133 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~ 182 (306)
T 3ii7_A 133 KPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWT 182 (306)
T ss_dssp ECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEE
T ss_pred CCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEE
Confidence 3222111 111112236777777764 345888998877553
No 342
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=67.06 E-value=1e+02 Score=30.49 Aligned_cols=131 Identities=10% Similarity=0.190 Sum_probs=87.8
Q ss_pred eeeecCCcceeeeccccceEEEEecCC----CEEEEEeCC---CeEEEEeCCCC---------eEeEEe-c---CCCceE
Q 012367 294 VFQIEESPLQELHGHKGDVLDLAWSNS----NYLLSCSMD---KTVRMWQVGCN---------QCLNVF-D---HHNYVT 353 (465)
Q Consensus 294 ~~~~~~~~~~~~~gh~~~V~~l~~s~~----~~l~s~s~D---gtV~lWD~~~~---------~~l~~~-~---h~~~V~ 353 (465)
+|..+.+.-+.+.||.+.-..+....+ ..++.+... +.+.|-++... +.+..+ . ..+...
T Consensus 183 LYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPv 262 (494)
T 1bpo_A 183 LYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV 262 (494)
T ss_dssp EEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEE
T ss_pred EeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCcee
Confidence 455556666777888776666655421 234444443 67888887532 111111 1 245667
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEeccc-CCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCCce
Q 012367 354 CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (465)
Q Consensus 354 ~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~~~ 425 (465)
++..++ .-..+..-..-|.|++||+.++.++.... ..+.|...+.+.....++....+|.|.--.++..++
T Consensus 263 amqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 263 AMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (494)
T ss_dssp EEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTH
T ss_pred EEEecc-cCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccccc
Confidence 888888 66677778889999999999998886443 455666666666777888888999988888877665
No 343
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=66.08 E-value=83 Score=29.02 Aligned_cols=91 Identities=10% Similarity=0.023 Sum_probs=51.9
Q ss_pred EEeCCCeEEEEeCCCCeEeEEecCCCceEEEEEccCCCCEEEEEeCC--CcEEEEeCCCCeEEecccCCCCeEEEEEeeC
Q 012367 325 SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID--GKVRIWGVCEKRVVDWADVRDVISAICYIPD 402 (465)
Q Consensus 325 s~s~DgtV~lWD~~~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~D--g~I~iwd~~~~~~~~~~~~~~~V~sv~~spd 402 (465)
+.....+|.+-++..+.....+.. ... ..+.| ++.+|+-.... ..|..-++.......+.. ..+ ..|+|+
T Consensus 162 t~~g~~~Iy~~~l~g~~~~~l~~~--~~~-~~~~P-~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~--~~~--~~~~~~ 233 (302)
T 3s25_A 162 NNPKNGQLYRYDTASQSEALFYDC--NCY-KPVVL-DDTNVYYMDVNRDNAIVHVNINNPNPVVLTE--ANI--EHYNVY 233 (302)
T ss_dssp ECTTTCCEEEEETTTTEEEEEECS--CEE-EEEEE-ETTEEEEEEGGGTTEEEEECSSSCCCEECSC--SCE--EEEEEE
T ss_pred EeCCCceEEEEECCCCCEEEEeCC--Ccc-ceeee-cCCEEEEEEcCCCcEEEEEECCCCCeEEEeC--CCc--ceEEEC
Confidence 433467888888877665544442 222 34568 77777665543 356666776655444332 223 348888
Q ss_pred CCEEEEEEc--CCcEEEEEecCC
Q 012367 403 GKGFIVGSI--TGTCHFYKASGN 423 (465)
Q Consensus 403 g~~l~sgs~--dG~v~iwd~~~~ 423 (465)
++.|.-++. .+.|..-++.+.
T Consensus 234 g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 234 GSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp TTEEEEEECSSSCEEEEEETTSC
T ss_pred CCEEEEEECCCCcEEEEEECCCC
Confidence 888876543 344555555554
No 344
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=65.77 E-value=36 Score=30.84 Aligned_cols=103 Identities=11% Similarity=0.123 Sum_probs=58.8
Q ss_pred CEEEEEeCC-----CeEEEEeCCCCeEeEE--ecCCC-ceEEEEEccCCCCEEEEEeCC-----CcEEEEeCCCCeEEec
Q 012367 321 NYLLSCSMD-----KTVRMWQVGCNQCLNV--FDHHN-YVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVVDW 387 (465)
Q Consensus 321 ~~l~s~s~D-----gtV~lWD~~~~~~l~~--~~h~~-~V~~i~fsp~~~~~l~sgs~D-----g~I~iwd~~~~~~~~~ 387 (465)
.+++.|+.+ ..+.+||+.+.+-... ..... ...++.+ ++.+++.|+.+ ..+.+||+.+......
T Consensus 114 ~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 190 (301)
T 2vpj_A 114 MIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA---SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV 190 (301)
T ss_dssp EEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE
T ss_pred EEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE---CCEEEEECCCCCCcccceEEEEeCCCCcEEeC
Confidence 344555433 3688899887753322 22111 1122222 67788888765 4588999988776543
Q ss_pred ccCCCC-eEEEEEeeCCCEEEEEEcC-----CcEEEEEecCCcee
Q 012367 388 ADVRDV-ISAICYIPDGKGFIVGSIT-----GTCHFYKASGNDLK 426 (465)
Q Consensus 388 ~~~~~~-V~sv~~spdg~~l~sgs~d-----G~v~iwd~~~~~~~ 426 (465)
...... ....+..-+++.++.|+.+ ..+.+||+.+++..
T Consensus 191 ~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 235 (301)
T 2vpj_A 191 TPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWT 235 (301)
T ss_dssp CCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred CCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEE
Confidence 322111 1111222367788888764 46889999877654
No 345
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=65.19 E-value=58 Score=30.33 Aligned_cols=56 Identities=9% Similarity=0.063 Sum_probs=28.5
Q ss_pred cEEEEeCCCCeEEecccCCC-CeEEEEEeeCCCEEEEEEcCC------cEEEEEecCCceeee
Q 012367 373 KVRIWGVCEKRVVDWADVRD-VISAICYIPDGKGFIVGSITG------TCHFYKASGNDLKLE 428 (465)
Q Consensus 373 ~I~iwd~~~~~~~~~~~~~~-~V~sv~~spdg~~l~sgs~dG------~v~iwd~~~~~~~~~ 428 (465)
.+.+||+.+.+......... .....+...+++.++.|+.++ .|.++++++++....
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred eEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 57789988765443221111 111222335788888888653 355567777766433
No 346
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=63.34 E-value=1.2e+02 Score=29.94 Aligned_cols=103 Identities=14% Similarity=0.158 Sum_probs=60.5
Q ss_pred cceEEEEecCCC--EEEEEeCCCeEEEEeCCCC---eEeEEec----C------CCceEEEEEccC---CCCEEEEEeCC
Q 012367 310 GDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCN---QCLNVFD----H------HNYVTCVQFNPI---DDNYFISGSID 371 (465)
Q Consensus 310 ~~V~~l~~s~~~--~l~s~s~DgtV~lWD~~~~---~~l~~~~----h------~~~V~~i~fsp~---~~~~l~sgs~D 371 (465)
...+.|+|.|++ .|+.+...|.|++++.... ..+..+. . ......|+|+|. ++.+.++-+.+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 456789999986 3777788999999975422 1222221 1 346788999982 24455544321
Q ss_pred ------------CcEEEEeCCC----------CeEE-ec--ccCCCCeEEEEEeeCCCEEEEEEcC
Q 012367 372 ------------GKVRIWGVCE----------KRVV-DW--ADVRDVISAICYIPDGKGFIVGSIT 412 (465)
Q Consensus 372 ------------g~I~iwd~~~----------~~~~-~~--~~~~~~V~sv~~spdg~~l~sgs~d 412 (465)
..|.-|.+.. .+++ .. .........|+|.|||.+.++.+..
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1333354431 1222 22 1223457899999999876665543
No 347
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=61.90 E-value=94 Score=28.24 Aligned_cols=94 Identities=12% Similarity=0.080 Sum_probs=53.9
Q ss_pred CeEEEEeCCCCeEeEEec--CCC-ceEEEEEccCCCCEEEEEeC-C-----CcEEEEeCCCCeEEecccCCCC-eEEEEE
Q 012367 330 KTVRMWQVGCNQCLNVFD--HHN-YVTCVQFNPIDDNYFISGSI-D-----GKVRIWGVCEKRVVDWADVRDV-ISAICY 399 (465)
Q Consensus 330 gtV~lWD~~~~~~l~~~~--h~~-~V~~i~fsp~~~~~l~sgs~-D-----g~I~iwd~~~~~~~~~~~~~~~-V~sv~~ 399 (465)
..+.+||+.+++-...-. ... ...++.+ ++.+++.|+. + ..+.+||..+.+.......... ....+.
T Consensus 117 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~ 193 (315)
T 4asc_A 117 DSVMCYDRLSFKWGESDPLPYVVYGHTVLSH---MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT 193 (315)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE
T ss_pred ceEEEECCCCCcEeECCCCCCcccceeEEEE---CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEE
Confidence 458889988765322111 111 1122222 6678888876 2 4689999988766553322211 111122
Q ss_pred eeCCCEEEEEEcCC-----cEEEEEecCCcee
Q 012367 400 IPDGKGFIVGSITG-----TCHFYKASGNDLK 426 (465)
Q Consensus 400 spdg~~l~sgs~dG-----~v~iwd~~~~~~~ 426 (465)
.-+++.++.|+.++ .+.+||+.+++..
T Consensus 194 ~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 194 VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWA 225 (315)
T ss_dssp EETTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred EECCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence 23778888888755 4788888877554
No 348
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=60.19 E-value=43 Score=30.59 Aligned_cols=92 Identities=8% Similarity=0.056 Sum_probs=54.0
Q ss_pred CeEEEEeCCCCeEeEEec--CCC-ceEEEEEccCCCCEEEEEeCC-----CcEEEEeCCCCeEEecccCC---CCeEEEE
Q 012367 330 KTVRMWQVGCNQCLNVFD--HHN-YVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVVDWADVR---DVISAIC 398 (465)
Q Consensus 330 gtV~lWD~~~~~~l~~~~--h~~-~V~~i~fsp~~~~~l~sgs~D-----g~I~iwd~~~~~~~~~~~~~---~~V~sv~ 398 (465)
..+.+||+.+.+-...-. ... ...++.+ ++.+++.|+.+ ..+.+||+.+.......... ....++.
T Consensus 137 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 213 (308)
T 1zgk_A 137 NSVERYEPERDEWHLVAPMLTRRIGVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV 213 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred ccEEEECCCCCeEeECCCCCccccceEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE
Confidence 458889988765332211 111 1122233 56777877765 45889999887765433211 1122222
Q ss_pred EeeCCCEEEEEEcC-----CcEEEEEecCCcee
Q 012367 399 YIPDGKGFIVGSIT-----GTCHFYKASGNDLK 426 (465)
Q Consensus 399 ~spdg~~l~sgs~d-----G~v~iwd~~~~~~~ 426 (465)
+ +++.++.|+.+ ..+.+||+.+++..
T Consensus 214 ~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 214 L--HNCIYAAGGYDGQDQLNSVERYDVETETWT 244 (308)
T ss_dssp E--TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred E--CCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence 2 67788888765 46889998877554
No 349
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=59.74 E-value=93 Score=35.70 Aligned_cols=216 Identities=12% Similarity=0.174 Sum_probs=114.3
Q ss_pred ccccccccchhhhccCC--CcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcc--------c-ccCCC
Q 012367 206 CMEFTALYTSQEIQAHK--GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFG--------S-NAKEG 274 (465)
Q Consensus 206 ~~~~~~~~~~~~l~~H~--~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~--------~-~~~~~ 274 (465)
.+....+.+.+.++.|. .+|.-=+|-... .|+-.+. ..|.-|++.........+.-..... . .....
T Consensus 87 ~lQiFnl~~k~klks~~~~e~VvfWkWis~~-~l~lVT~-~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW 164 (1630)
T 1xi4_A 87 TLQIFNIEMKSKMKAHTMTDDVTFWKWISLN-TVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKW 164 (1630)
T ss_pred eEEEeehHHhhhhcccccCCCceEEEecCCC-eeEEEcC-CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCe
Confidence 33444555555666663 456666665433 4444443 5699999965222211111111110 0 00111
Q ss_pred eEEeccCCCCceeEecCCceeeecCCcceeeeccccceEEEEecC----CCEEEEEeC---CCeEEEEeCCCC---e---
Q 012367 275 KIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSN----SNYLLSCSM---DKTVRMWQVGCN---Q--- 341 (465)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~----~~~l~s~s~---DgtV~lWD~~~~---~--- 341 (465)
.+.++-... ...+...-..|..+.+.-+.+.||.+.-..+.... ...++.+.. .+.+.|-++... .
T Consensus 165 ~~l~gi~~~-~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f 243 (1630)
T 1xi4_A 165 LLLTGISAQ-QNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF 243 (1630)
T ss_pred EEEEeeccC-CCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCC
Confidence 111111111 11122222345556666677788877665555531 123332222 268888888543 1
Q ss_pred ---EeEEe-c---CCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEeccc-CCCCeEEEEEeeCCCEEEEEEcCC
Q 012367 342 ---CLNVF-D---HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGSITG 413 (465)
Q Consensus 342 ---~l~~~-~---h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~V~sv~~spdg~~l~sgs~dG 413 (465)
.+..+ . ..+...++..++ .-..+..-..-|.|.++|+.++..+.... ....|...+.+.....++.....|
T Consensus 244 ~kk~~~~~~~~~~~~Dfpv~~~vs~-k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G 322 (1630)
T 1xi4_A 244 PKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKG 322 (1630)
T ss_pred ccccccccCCcccccCcceEEEecc-ccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCc
Confidence 11111 1 234556778887 55666677788999999999998775433 344555555555555677777888
Q ss_pred cEEEEEecCCce
Q 012367 414 TCHFYKASGNDL 425 (465)
Q Consensus 414 ~v~iwd~~~~~~ 425 (465)
.|.--.+...++
T Consensus 323 ~vl~v~v~~~~i 334 (1630)
T 1xi4_A 323 QVLSVCVEEENI 334 (1630)
T ss_pred eEEEEEEccchh
Confidence 887777776655
No 350
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=59.74 E-value=1.3e+02 Score=29.70 Aligned_cols=29 Identities=24% Similarity=0.107 Sum_probs=21.7
Q ss_pred cEEEEEECCCCC-EEEEEeCCCcEEEEecC
Q 012367 224 CIWTLKFSPDGR-YLASGGEDGVVRIWHVT 252 (465)
Q Consensus 224 ~I~~l~fspdg~-~LaSgs~Dg~V~iWd~~ 252 (465)
.-+.|+|.|+|. .|+.+...|.|++++..
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 457999999996 34445678999998643
No 351
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=55.56 E-value=1.2e+02 Score=27.51 Aligned_cols=104 Identities=16% Similarity=0.179 Sum_probs=56.7
Q ss_pred CCEEEEEeCC-------CeEEEEeCCCCeEeEEecCCCce--EEEEEccCCCCEEEEEeCC------CcEEEEeCCCCeE
Q 012367 320 SNYLLSCSMD-------KTVRMWQVGCNQCLNVFDHHNYV--TCVQFNPIDDNYFISGSID------GKVRIWGVCEKRV 384 (465)
Q Consensus 320 ~~~l~s~s~D-------gtV~lWD~~~~~~l~~~~h~~~V--~~i~fsp~~~~~l~sgs~D------g~I~iwd~~~~~~ 384 (465)
+.+++.|+.+ ..+.+||+.+.+-...-...... .+++. . ++.+++.|+.+ ..+.+||+.+.+.
T Consensus 110 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 110 DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-H-NGMIYCLGGKTDDKKCTNRVFIYNPKKGDW 187 (318)
T ss_dssp TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-E-TTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-E-CCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence 3455555543 35788888876533321111110 11222 2 67777777642 4589999988765
Q ss_pred EecccCCCC--eEEEEEeeCCCEEEEEEcC-----CcEEEEEecCCcee
Q 012367 385 VDWADVRDV--ISAICYIPDGKGFIVGSIT-----GTCHFYKASGNDLK 426 (465)
Q Consensus 385 ~~~~~~~~~--V~sv~~spdg~~l~sgs~d-----G~v~iwd~~~~~~~ 426 (465)
......... -.+++ .-+++.++.|+.+ ..+.+||+.+++..
T Consensus 188 ~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 235 (318)
T 2woz_A 188 KDLAPMKTPRSMFGVA-IHKGKIVIAGGVTEDGLSASVEAFDLKTNKWE 235 (318)
T ss_dssp EEECCCSSCCBSCEEE-EETTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred EECCCCCCCcccceEE-EECCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence 543222111 11222 2367788888754 34678888876553
No 352
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=55.44 E-value=30 Score=38.75 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=28.5
Q ss_pred ceEEEEEccCCCCEEEEEeCCCcEEEEeCCCCeEEe
Q 012367 351 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD 386 (465)
Q Consensus 351 ~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~~~~~~ 386 (465)
.+.+++..+ +..++++-+.|+++|||++.+++++.
T Consensus 239 ~~vs~~~~~-~~~~lftL~~D~~LRiWsl~t~~~v~ 273 (1139)
T 4fhn_B 239 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVE 273 (1139)
T ss_dssp CBSCCEEET-TTTEEEEEBTTCEEEEEETTTTEEEE
T ss_pred eeEEeeccC-CccEEEEEeCCCEEEEEECCCCCeEE
Confidence 344555556 78899999999999999999998764
No 353
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=55.17 E-value=1e+02 Score=29.14 Aligned_cols=105 Identities=10% Similarity=-0.032 Sum_probs=54.6
Q ss_pred cceEEEEecC--CCEEEEEeCCC----eEEEEeCCCCeEeEEec---------------CCCceEEEEEccCC-CCEEEE
Q 012367 310 GDVLDLAWSN--SNYLLSCSMDK----TVRMWQVGCNQCLNVFD---------------HHNYVTCVQFNPID-DNYFIS 367 (465)
Q Consensus 310 ~~V~~l~~s~--~~~l~s~s~Dg----tV~lWD~~~~~~l~~~~---------------h~~~V~~i~fsp~~-~~~l~s 367 (465)
..|.+|++.| .+.|..+...+ .|...+ ..+..-..+. ....|.++++.|.+ ...+..
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 4688899987 45555555444 343332 2222211111 11257889998754 555666
Q ss_pred EeCCCcEEEEeCCCCeEEecc-------------------cCCCCeEEEEEeeC-CCEEEEEEcCCcE
Q 012367 368 GSIDGKVRIWGVCEKRVVDWA-------------------DVRDVISAICYIPD-GKGFIVGSITGTC 415 (465)
Q Consensus 368 gs~Dg~I~iwd~~~~~~~~~~-------------------~~~~~V~sv~~spd-g~~l~sgs~dG~v 415 (465)
+...+.|...+-......... .....+.+|.++|. ...|++++.++.+
T Consensus 134 g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl 201 (394)
T 3b7f_A 134 GTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGV 201 (394)
T ss_dssp EEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEE
T ss_pred EecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCE
Confidence 655665655543222222211 11235789999983 4556666655544
No 354
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=53.96 E-value=1.2e+02 Score=29.20 Aligned_cols=90 Identities=9% Similarity=0.129 Sum_probs=60.4
Q ss_pred eEEEEeCCCC--eEeEEec-------CCCceEEEEEc---cC---CCCEE-EEEeCCCcEEEEeCCCCeEEeccc----C
Q 012367 331 TVRMWQVGCN--QCLNVFD-------HHNYVTCVQFN---PI---DDNYF-ISGSIDGKVRIWGVCEKRVVDWAD----V 390 (465)
Q Consensus 331 tV~lWD~~~~--~~l~~~~-------h~~~V~~i~fs---p~---~~~~l-~sgs~Dg~I~iwd~~~~~~~~~~~----~ 390 (465)
.|.+||+.++ +.++.+. ....+..+.+. |. ++.++ ++=+....|.|+|+.+++..+... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5888999999 8888874 23467888887 21 13343 444456789999999876554221 0
Q ss_pred ---------------CCCeEEEEEeeC----CCEEEEEEcCCcEEEEEec
Q 012367 391 ---------------RDVISAICYIPD----GKGFIVGSITGTCHFYKAS 421 (465)
Q Consensus 391 ---------------~~~V~sv~~spd----g~~l~sgs~dG~v~iwd~~ 421 (465)
...|..++.+|+ ++.|.-....+. ++|.+.
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~ 252 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVN 252 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEE
Confidence 236778889987 777777776654 466654
No 355
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=53.61 E-value=53 Score=34.41 Aligned_cols=103 Identities=17% Similarity=0.242 Sum_probs=61.6
Q ss_pred CEEEEEeCC------CeEEEEeCCCCeEeEEe--cCCCceEEEEEccCCCCEEEEEeCCC--cEEEEeCCCCeEEeccc-
Q 012367 321 NYLLSCSMD------KTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDG--KVRIWGVCEKRVVDWAD- 389 (465)
Q Consensus 321 ~~l~s~s~D------gtV~lWD~~~~~~l~~~--~h~~~V~~i~fsp~~~~~l~sgs~Dg--~I~iwd~~~~~~~~~~~- 389 (465)
..++.|+.+ ..+.+||+.+.+-...- ...-.-.+++... ++.+++.|+.++ .+.+||..+........
T Consensus 453 ~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~ 531 (695)
T 2zwa_A 453 QLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPK 531 (695)
T ss_dssp EEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECCCS
T ss_pred EEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEccCC
Confidence 355555543 35788888876432221 1111112233323 688888888765 69999999887654332
Q ss_pred -----CCCCeEEEEEeeC-CCEEEEEEc--C-----CcEEEEEecCCc
Q 012367 390 -----VRDVISAICYIPD-GKGFIVGSI--T-----GTCHFYKASGND 424 (465)
Q Consensus 390 -----~~~~V~sv~~spd-g~~l~sgs~--d-----G~v~iwd~~~~~ 424 (465)
......++.+..+ ++.++.|+. + ..+.+||+.++.
T Consensus 532 g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 532 DEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp SGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 2222344666655 677788876 2 458899998887
No 356
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=50.32 E-value=33 Score=35.04 Aligned_cols=91 Identities=8% Similarity=0.053 Sum_probs=62.8
Q ss_pred eEEEEeCCC----Ce-EeEEecCCCceEEEEEccCCCCEEEEEe-CCCcEEEEeCCCC------eE-------EecccCC
Q 012367 331 TVRMWQVGC----NQ-CLNVFDHHNYVTCVQFNPIDDNYFISGS-IDGKVRIWGVCEK------RV-------VDWADVR 391 (465)
Q Consensus 331 tV~lWD~~~----~~-~l~~~~h~~~V~~i~fsp~~~~~l~sgs-~Dg~I~iwd~~~~------~~-------~~~~~~~ 391 (465)
.|.+-|.+. +. .+..+........+.++| +|+|++.++ .+.+|.++|+..- ++ +......
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsP-DGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G 377 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSS-DGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG 377 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECT-TSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCC-CCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC
Confidence 477788765 22 333344555566788999 888877765 4789999998741 11 2233345
Q ss_pred CCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367 392 DVISAICYIPDGKGFIVGSITGTCHFYKASG 422 (465)
Q Consensus 392 ~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~ 422 (465)
-.....+|.++|....+--.|..|--|++..
T Consensus 378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp SCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred CcccEEEECCCCceEeeeeecceEEEEeccH
Confidence 5678899999995555555799999999975
No 357
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=49.49 E-value=70 Score=35.74 Aligned_cols=36 Identities=19% Similarity=0.538 Sum_probs=29.1
Q ss_pred eEEEEecCC-CEEEEEeCCCeEEEEeCCCCeEeEEec
Q 012367 312 VLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFD 347 (465)
Q Consensus 312 V~~l~~s~~-~~l~s~s~DgtV~lWD~~~~~~l~~~~ 347 (465)
+.+++..++ .++++-+.|+++|+|++.+++|+.+..
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 344444554 689999999999999999999998864
No 358
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=49.26 E-value=29 Score=36.45 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=31.2
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec
Q 012367 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFT 262 (465)
Q Consensus 222 ~~~I~~l~fspdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~ 262 (465)
...|.++.+. ..+|+|-+.|+++|+|++.++.+......
T Consensus 221 ~~~Is~~~~~--~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 221 DSVISCKLFH--ERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CCEEEEEEET--TTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred CceEEEeccC--CcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3567777764 67999999999999999999887665444
No 359
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=48.86 E-value=1.7e+02 Score=27.28 Aligned_cols=160 Identities=13% Similarity=0.150 Sum_probs=92.0
Q ss_pred CcEEEE-EECC--CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367 223 GCIWTL-KFSP--DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (465)
Q Consensus 223 ~~I~~l-~fsp--dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (465)
..|.++ .+.. +..++++++.+|.|+--.+........ . +
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r-------------~-------------------------G 136 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRS-------------G-------------------------G 136 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCS-------------S-------------------------C
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcccc-------------C-------------------------c
Confidence 334444 4442 567999999999999888765321100 0 0
Q ss_pred CcceeeeccccceEEEEe-cCCCEEEEEeCCCeEEEEeCC--C---------CeEeEEecCCCceEEEEEccCCCCEEEE
Q 012367 300 SPLQELHGHKGDVLDLAW-SNSNYLLSCSMDKTVRMWQVG--C---------NQCLNVFDHHNYVTCVQFNPIDDNYFIS 367 (465)
Q Consensus 300 ~~~~~~~gh~~~V~~l~~-s~~~~l~s~s~DgtV~lWD~~--~---------~~~l~~~~h~~~V~~i~fsp~~~~~l~s 367 (465)
.....+.. .+.+..+.. +....|+..+..|.+..+.+. . |...-.+.....|.++...+ .+.+++.
T Consensus 137 ~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~-~~~~ll~ 214 (327)
T 3uc1_A 137 IVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVR-EGTYLLV 214 (327)
T ss_dssp EESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECC-TTCEEEE
T ss_pred eEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEEC-CCCEEEE
Confidence 00011112 223333333 344567777788887777665 2 11112233556677776665 5678999
Q ss_pred EeCCCcEEEEeCCC-------Ce-EEe--cccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367 368 GSIDGKVRIWGVCE-------KR-VVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG 422 (465)
Q Consensus 368 gs~Dg~I~iwd~~~-------~~-~~~--~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~ 422 (465)
.+..|.++.-.+.. +. +.. +..-.+.+..+....+...++..+.+|.+.-++...
T Consensus 215 ~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 215 ATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 99999999887522 11 111 222234455555555556788888999888887653
No 360
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=48.13 E-value=1.7e+02 Score=27.02 Aligned_cols=103 Identities=15% Similarity=0.168 Sum_probs=67.6
Q ss_pred CCCEEEEEeCCCeEEEEeCCC-------CeEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCC----C---eE
Q 012367 319 NSNYLLSCSMDKTVRMWQVGC-------NQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE----K---RV 384 (465)
Q Consensus 319 ~~~~l~s~s~DgtV~lWD~~~-------~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~----~---~~ 384 (465)
++.+|+..+..|.++.-.+.. |.....+...+.+..+.... ....++..+..|.+..+.... + .-
T Consensus 113 ~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~-~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~G 191 (312)
T 1suu_A 113 DDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVF-KDEKVICLSKKGSAFIFNSRDVRLTNRGTQG 191 (312)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCTTBCC
T ss_pred CCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeC-CCCEEEEEeCCCcEEEEEHHHccccCCCCCC
Confidence 346888999999999887742 22222233455666665554 456788888899988887633 1 11
Q ss_pred E---ecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367 385 V---DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN 423 (465)
Q Consensus 385 ~---~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~ 423 (465)
+ .+. ..+.|.++...+++..+++.+..|......+..-
T Consensus 192 v~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 192 VCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp EECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred eEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 1 222 2455666666556677889999999999888643
No 361
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=46.24 E-value=1.7e+02 Score=26.48 Aligned_cols=103 Identities=16% Similarity=0.083 Sum_probs=67.9
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC------eEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCCC----C---eEE
Q 012367 319 NSNYLLSCSMDKTVRMWQVGCN------QCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE----K---RVV 385 (465)
Q Consensus 319 ~~~~l~s~s~DgtV~lWD~~~~------~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~~----~---~~~ 385 (465)
++.+++..+.+|.|+-..+..- .....+...+.+..+.... ....++..+..|.+..+.... + .-+
T Consensus 79 ~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~-~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv 157 (276)
T 3no0_A 79 FGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSV-DETHILLFTKKGRVARFSVREVPPSTPGARGV 157 (276)
T ss_dssp SCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECC-SSCEEEEEETTSEEEEEEGGGSCBCCTTCCCE
T ss_pred CCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeC-CCCEEEEEECCCEEEEEEhhhCCCcCCCCCCE
Confidence 3468999999999998876442 2222233456666666655 556788888899988876522 1 111
Q ss_pred ec--ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367 386 DW--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG 422 (465)
Q Consensus 386 ~~--~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~ 422 (465)
.. ....+.|.++...+++..++..+..|.++...+..
T Consensus 158 ~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 158 QGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp ECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGG
T ss_pred EEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHH
Confidence 11 12235676666666677899999999999888764
No 362
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=44.26 E-value=2.1e+02 Score=26.94 Aligned_cols=103 Identities=9% Similarity=-0.040 Sum_probs=53.4
Q ss_pred cceEEEEecC---CCEEEEEeCCCeEEEEeCCCCeEeEEec--------------------CCCceEEEEEccCCCCEEE
Q 012367 310 GDVLDLAWSN---SNYLLSCSMDKTVRMWQVGCNQCLNVFD--------------------HHNYVTCVQFNPIDDNYFI 366 (465)
Q Consensus 310 ~~V~~l~~s~---~~~l~s~s~DgtV~lWD~~~~~~l~~~~--------------------h~~~V~~i~fsp~~~~~l~ 366 (465)
..|.++++.| .+.|..+...+.|...+-. ++.-..+. ....|.+|.++|.+...+.
T Consensus 115 ~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~ 193 (394)
T 3b7f_A 115 DHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLY 193 (394)
T ss_dssp CEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEE
T ss_pred cceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEE
Confidence 3577788875 3555555555555544322 22212221 1235789999885445444
Q ss_pred EEeCCCcEEEEeCCCCeEEeccc-C------------CCCeEEEEEeeC-CCEEEEEEcCC
Q 012367 367 SGSIDGKVRIWGVCEKRVVDWAD-V------------RDVISAICYIPD-GKGFIVGSITG 413 (465)
Q Consensus 367 sgs~Dg~I~iwd~~~~~~~~~~~-~------------~~~V~sv~~spd-g~~l~sgs~dG 413 (465)
.+..++.|...+-.......... . ...+.+++++|+ ...|++++..|
T Consensus 194 vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 194 IGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp EEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred EEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 45444444444322222211110 0 124889999986 45777776554
No 363
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=42.47 E-value=1.9e+02 Score=26.08 Aligned_cols=158 Identities=13% Similarity=0.162 Sum_probs=89.3
Q ss_pred CCcEEEEEECC--CCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecC
Q 012367 222 KGCIWTLKFSP--DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (465)
Q Consensus 222 ~~~I~~l~fsp--dg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (465)
...|..+.. + +..+++.++.+|.|+-..+.... ... .+
T Consensus 67 ~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~-~~~-------------~G------------------------- 106 (276)
T 3no0_A 67 EEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE-YKA-------------QG------------------------- 106 (276)
T ss_dssp TCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT-TCS-------------TT-------------------------
T ss_pred CCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh-hhc-------------CC-------------------------
Confidence 445655543 4 46799999999999998876532 000 00
Q ss_pred CcceeeeccccceEEEEec-CCCEEEEEeCCCeEEEEeCC---------CCeEeEEecCCCceEEEEEccCCCCEEEEEe
Q 012367 300 SPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVG---------CNQCLNVFDHHNYVTCVQFNPIDDNYFISGS 369 (465)
Q Consensus 300 ~~~~~~~gh~~~V~~l~~s-~~~~l~s~s~DgtV~lWD~~---------~~~~l~~~~h~~~V~~i~fsp~~~~~l~sgs 369 (465)
.....+.. .+.+..+... ....++..+..|.+..+... .|.....+...+.|..+...+ ++.+++..+
T Consensus 107 ~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~-~~~~ll~~T 184 (276)
T 3no0_A 107 MPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWN-GEPYLLVIT 184 (276)
T ss_dssp EECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEES-SCSEEEEEE
T ss_pred eEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeC-CCCEEEEEe
Confidence 00001111 1233333333 33567777888887777642 122222233456666665555 567888889
Q ss_pred CCCcEEEEeCCC-------Ce-EEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEE--EEecC
Q 012367 370 IDGKVRIWGVCE-------KR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHF--YKASG 422 (465)
Q Consensus 370 ~Dg~I~iwd~~~-------~~-~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~i--wd~~~ 422 (465)
..|.++...+.. ++ +..+ ...+.+..+....+...++..+.+|.+.. +++..
T Consensus 185 ~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 185 AKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp TTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred CCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 999999887632 21 2223 33344555444444457778888898877 77653
No 364
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=37.22 E-value=1.6e+02 Score=27.10 Aligned_cols=48 Identities=6% Similarity=-0.029 Sum_probs=27.5
Q ss_pred CcEEEEeCCCCeEEecccCCC--Ce-EEEEEeeCCCEEEEEEc------CCcEEEEEe
Q 012367 372 GKVRIWGVCEKRVVDWADVRD--VI-SAICYIPDGKGFIVGSI------TGTCHFYKA 420 (465)
Q Consensus 372 g~I~iwd~~~~~~~~~~~~~~--~V-~sv~~spdg~~l~sgs~------dG~v~iwd~ 420 (465)
..+.+||..+.+......... .- .+++. -++++++.|+. ...+.+||+
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEEC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEe
Confidence 578999998876554322211 11 22222 36677777764 345677876
No 365
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=32.74 E-value=1.1e+02 Score=31.40 Aligned_cols=58 Identities=16% Similarity=0.246 Sum_probs=40.9
Q ss_pred eEEEEEccCCCCEEEEEeCC------------CcEEEEeCCCCeEEecc--cCCCCeEEEEEeeCCCEEEEEE
Q 012367 352 VTCVQFNPIDDNYFISGSID------------GKVRIWGVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGS 410 (465)
Q Consensus 352 V~~i~fsp~~~~~l~sgs~D------------g~I~iwd~~~~~~~~~~--~~~~~V~sv~~spdg~~l~sgs 410 (465)
.--|+|+| .+++++.-..+ ..+.+.+..++++..+. .....++.++|+||++.|++.-
T Consensus 478 PDNL~fd~-~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 478 PDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECT-TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CcceEECC-CCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 45689999 88877764322 23556666777776533 3456799999999999887764
No 366
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=30.67 E-value=1.4e+02 Score=30.58 Aligned_cols=59 Identities=14% Similarity=0.205 Sum_probs=42.1
Q ss_pred ceEEEEEccCCCCEEEEEeC------------CCcEEEEeCCCCeEEeccc--CCCCeEEEEEeeCCCEEEEEE
Q 012367 351 YVTCVQFNPIDDNYFISGSI------------DGKVRIWGVCEKRVVDWAD--VRDVISAICYIPDGKGFIVGS 410 (465)
Q Consensus 351 ~V~~i~fsp~~~~~l~sgs~------------Dg~I~iwd~~~~~~~~~~~--~~~~V~sv~~spdg~~l~sgs 410 (465)
....|.|.+ ++.+.+.... ...|..++..++++..+.. ....++.++|+||++.|++.-
T Consensus 477 sPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 456899999 8887773221 1256777777787766443 235689999999999888765
No 367
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=24.00 E-value=4.3e+02 Score=24.42 Aligned_cols=103 Identities=11% Similarity=0.106 Sum_probs=68.0
Q ss_pred CCEEEEEeCCCeEEEEeCCCC-------eEeEEecCCCceEEEEEccCCCCEEEEEeCCCcEEEEeCC--CCeE------
Q 012367 320 SNYLLSCSMDKTVRMWQVGCN-------QCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC--EKRV------ 384 (465)
Q Consensus 320 ~~~l~s~s~DgtV~lWD~~~~-------~~l~~~~h~~~V~~i~fsp~~~~~l~sgs~Dg~I~iwd~~--~~~~------ 384 (465)
+.+++.++.+|.|+--.+... .....+...+.+..+.... ....++..+..|.+..+... .-+.
T Consensus 109 e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~-~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~ 187 (327)
T 3uc1_A 109 APYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCS-AGDDLLLVSANGQSIRFSATDEALRPMGRATS 187 (327)
T ss_dssp SSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEEC-TTCEEEEEETTSEEEEEECCTTTSCCCCTTSB
T ss_pred CCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEec-CCCEEEEEECCCeEEEEECcccccCcCCcCCC
Confidence 468999999999999876432 2222233455666665555 45677777888988877665 2111
Q ss_pred -Eec--ccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecCC
Q 012367 385 -VDW--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN 423 (465)
Q Consensus 385 -~~~--~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~~ 423 (465)
+.. ....+.|.++...+++..++..+..|.++.-.+..-
T Consensus 188 Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~ 229 (327)
T 3uc1_A 188 GVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEY 229 (327)
T ss_dssp CEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGS
T ss_pred CeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHc
Confidence 111 123456777777677779999999999988876543
No 368
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=22.02 E-value=4.7e+02 Score=24.10 Aligned_cols=149 Identities=13% Similarity=0.090 Sum_probs=0.0
Q ss_pred CCCCEEEEEeCCCcEEEEecCCceeeeeeecCCCCcccccCCCeEEeccCCCCceeEecCCceeeecCCcceeeeccccc
Q 012367 232 PDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGD 311 (465)
Q Consensus 232 pdg~~LaSgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~ 311 (465)
|+..++++.+.+|.|+--.+..... .......+..+..-
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~-----------------------------------------~~~~~~~lke~D~l 41 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAA-----------------------------------------SNGQDFAMKDTDRL 41 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHH-----------------------------------------TTTCCCCCCTTCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhh-----------------------------------------cCccccccCCCCEE
Q ss_pred eEEEEecCCCEEEEEeCCCeEEEEeC---------CCCe---EeEEecCCCceEEEEEccCC---CCEEEEEeCCCcEEE
Q 012367 312 VLDLAWSNSNYLLSCSMDKTVRMWQV---------GCNQ---CLNVFDHHNYVTCVQFNPID---DNYFISGSIDGKVRI 376 (465)
Q Consensus 312 V~~l~~s~~~~l~s~s~DgtV~lWD~---------~~~~---~l~~~~h~~~V~~i~fsp~~---~~~l~sgs~Dg~I~i 376 (465)
+..+..+....|+..+..|.+.-... ..|. .+-.+.....|..+..-+ + +.+++..+..|.++.
T Consensus 42 ~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~-~~~~~~~ll~~T~~G~iKr 120 (323)
T 1wp5_A 42 LAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPIN-DFELNGYFLFVTRNGMVKK 120 (323)
T ss_dssp EEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEES-CTTSSCEEEEEETTSEEEE
T ss_pred EEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEec-ccCCCceEEEEeCCCeEEE
Q ss_pred EeC--------CCCeEEecccCCCCeEEEEEeeCCCEEEEEEcCCcEEEEEecC
Q 012367 377 WGV--------CEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG 422 (465)
Q Consensus 377 wd~--------~~~~~~~~~~~~~~V~sv~~spdg~~l~sgs~dG~v~iwd~~~ 422 (465)
..+ ..+.......-.+.+..+........++..+.+|.+..+....
T Consensus 121 t~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~e 174 (323)
T 1wp5_A 121 TELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESE 174 (323)
T ss_dssp EEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGG
T ss_pred eEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHH
No 369
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=21.83 E-value=3.6e+02 Score=27.45 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=39.6
Q ss_pred cceEEEEecCCCEEEEEeCC-------------CeEEEEeCCCCeEeEEec--CCCceEEEEEccCCCCEEEEEe
Q 012367 310 GDVLDLAWSNSNYLLSCSMD-------------KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGS 369 (465)
Q Consensus 310 ~~V~~l~~s~~~~l~s~s~D-------------gtV~lWD~~~~~~l~~~~--h~~~V~~i~fsp~~~~~l~sgs 369 (465)
.....|.|.+++.|..+... ..|..++..+++....+. ....++.++|+| |++.|+..-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSP-D~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP-DQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT-TSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECC-CCCEEEEEE
Confidence 45678889887744443221 257777877787665553 335789999999 888776654
Done!