BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012368
(465 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Thermotoga Maritima
Length = 385
Score = 358 bits (919), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 185/387 (47%), Positives = 252/387 (65%), Gaps = 9/387 (2%)
Query: 73 LVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH 132
L+ TY+R P GKG +YD +G YLD +SGIAVN LGH ++A+ DQA L H
Sbjct: 3 LMNTYSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIH 62
Query: 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192
SN++++ PQ+ELA+ L +F +VFF+NTGTEANEAAIK ARK E
Sbjct: 63 CSNLFWNRPQMELAELLSKNTFGGKVFFANTGTEANEAAIKIARK----YGKKKSEKKYR 118
Query: 193 FVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV 252
+S NSFHGRT+G+L T + Y+ PFEP++PG + E+ N+E R+ + AVF+
Sbjct: 119 ILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNVEDLRRKMSE-DVCAVFL 177
Query: 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT 312
EPIQGE GI ATKEFL+ R CD+ ALLVFDEVQCG+GRTG L+A++ YG+ PD++T
Sbjct: 178 EPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLT 237
Query: 313 LAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVS 372
AK L GG+PIGA +V E+ A+ + GDHG+TF G+PL C A + V+ +++ FL V
Sbjct: 238 TAKGLGGGVPIGAVIVNER-ANVLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVE 296
Query: 373 KKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF--DVSATPVVDACRDSGLLVLTAGKG 430
+KG+Y + L++ V DVRG+GL+IGI+F +VS V C ++ LLV+ AG
Sbjct: 297 EKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREEVSNREVATKCFENKLLVVPAGN- 355
Query: 431 NVVRLVPPLIISEQELDQAVEILCKTL 457
N +R +PPL + E+D AVE L K L
Sbjct: 356 NTIRFLPPLTVEYGEIDLAVETLKKVL 382
>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
pdb|2ORD|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
Length = 397
Score = 351 bits (901), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 185/387 (47%), Positives = 246/387 (63%), Gaps = 9/387 (2%)
Query: 73 LVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH 132
L TY+R P GKG +YD +G YLD +SGIAVN LGH ++A+ DQA L H
Sbjct: 15 LXNTYSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIH 74
Query: 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192
SN++++ PQ ELA+ L +F +VFF+NTGTEANEAAIK ARK E
Sbjct: 75 CSNLFWNRPQXELAELLSKNTFGGKVFFANTGTEANEAAIKIARK----YGKKKSEKKYR 130
Query: 193 FVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV 252
+S NSFHGRT+G+L T + Y+ PFEP++PG + E+ N+E R+ AVF+
Sbjct: 131 ILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNVEDLRRKXSE-DVCAVFL 189
Query: 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT 312
EPIQGE GI ATKEFL+ R CD+ ALLVFDEVQCG GRTG L+A++ YG+ PD++T
Sbjct: 190 EPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGXGRTGKLFAYQKYGVVPDVLT 249
Query: 313 LAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVS 372
AK L GG+PIGA +V E+ A+ + GDHG+TF G+PL C A + V+ +++ FL V
Sbjct: 250 TAKGLGGGVPIGAVIVNER-ANVLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVE 308
Query: 373 KKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF--DVSATPVVDACRDSGLLVLTAGKG 430
+KG+Y + L++ V DVRG GL IGI+F +VS V C ++ LLV+ AG
Sbjct: 309 EKGNYLXKKLQEXKEEYDVVADVRGXGLXIGIQFREEVSNREVATKCFENKLLVVPAGN- 367
Query: 431 NVVRLVPPLIISEQELDQAVEILCKTL 457
N +R +PPL + E+D AVE L K L
Sbjct: 368 NTIRFLPPLTVEYGEIDLAVETLKKVL 394
>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
pdb|2EH6|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
Length = 375
Score = 314 bits (804), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 168/387 (43%), Positives = 246/387 (63%), Gaps = 16/387 (4%)
Query: 73 LVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH 132
L+ Y R PV GKG LYD EG+EYLD SGI VN+LGH +A+ +Q L H
Sbjct: 3 LMNNYARLPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLH 62
Query: 133 VSNMYYSIPQIELAKRLVACSFAD-RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT 191
VSN+Y + Q ELA +LV + + +VFF+N+GTE+ EAAIK ARK+ R D +
Sbjct: 63 VSNLYENPWQEELAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWR----DKGKNKW 118
Query: 192 EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVF 251
+F+SF NSFHGRT G+L+ T + + FEP++PG ++ + +I++ KL+ +TA +
Sbjct: 119 KFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLNDIDSVYKLLDE-ETAGII 177
Query: 252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM 311
+E IQGEGG+ A+++FL L++ C + LL+ DEVQ G+GRTG +A++H+ + PD++
Sbjct: 178 IEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVI 237
Query: 312 TLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASV 371
LAK L GG+PIGA L E+VA + G HGSTF G+PL C A V+D++ L V
Sbjct: 238 ALAKGLGGGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEVEK--LLPHV 295
Query: 372 SKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLV-LTAGKG 430
+ G+YFKE LK+ L + V+G GL++G+E + V + GLL+ TAGK
Sbjct: 296 REVGNYFKEKLKE-LGKG----KVKGRGLMLGLELERECKDYVLKALEKGLLINCTAGK- 349
Query: 431 NVVRLVPPLIISEQELDQAVEILCKTL 457
V+R +PPLII ++ +D+A+ +L + L
Sbjct: 350 -VLRFLPPLIIQKEHIDRAISVLREIL 375
>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
Length = 406
Score = 300 bits (769), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 161/385 (41%), Positives = 230/385 (59%), Gaps = 9/385 (2%)
Query: 71 KLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL 130
+ ++ Y AP + G+G +L+D +G+EY+D + GIAVNALGH + +A+ +QA+
Sbjct: 12 EWMIPVYAPAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKF 71
Query: 131 THVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190
H N Y + P + LAK+L+ +FADRVFF N+G EANEAA+K ARKF K
Sbjct: 72 WHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARKFAHDRYGSHK--- 128
Query: 191 TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV 250
+ V+F N+FHGRT+ ++ + Y F P+ + Y +I + LI T AV
Sbjct: 129 SGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSASALIDD-STCAV 187
Query: 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDI 310
VEPIQGEGG+ A+ FLQ LR+ C+ ALL+FDEVQ G+GRTG L+A+ HYG+ PD+
Sbjct: 188 IVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDL 247
Query: 311 MTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS 370
+T AK L GG P+GA L TE+ A + G HG+T+ G+PL A VL+ I+ P L
Sbjct: 248 LTTAKALGGGFPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNG 307
Query: 371 VSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGI----EFDVSATPVVDACRDSGLLVLT 426
V ++ +F E L R +VRGLGL+IG ++ A + +G++VL
Sbjct: 308 VKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADYAGQAKQISQEAAKAGVMVLI 367
Query: 427 AGKGNVVRLVPPLIISEQELDQAVE 451
AG GNVVR P L +SE+E+ ++
Sbjct: 368 AG-GNVVRFAPALNVSEEEVTTGLD 391
>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
pdb|3NX3|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
Length = 395
Score = 295 bits (756), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 159/392 (40%), Positives = 239/392 (60%), Gaps = 9/392 (2%)
Query: 69 EKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQAN 128
E+ ++ TY R +VL G+G L+D + ++YLD SSGI V ALG+ A + + Q +
Sbjct: 7 EQSHIIPTYKRFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVD 66
Query: 129 VLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKE 188
L H SN+YY+ AK L S +RVFF+N+GTE+ E A K ARK+ +
Sbjct: 67 KLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSGTESIEGAXKTARKYAFNKGV---- 122
Query: 189 PATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA 248
+F++F +SFHGRT+GAL+LT+ E Y+ PF+P++ GV F +Y +I + KL+ KT
Sbjct: 123 KGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYNDISSVEKLVNE-KTC 181
Query: 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFP 308
A+ +E +QGEGGI A K+F + LR CD+ LL+ DE+QCG GR+G +A+EH I P
Sbjct: 182 AIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGXGRSGKFFAYEHAQILP 241
Query: 309 DIMTLAKPLAGGLPIGAALVTEKVAS-AINYGDHGSTFAGSPLVCNAAIAVLDKISNPAF 367
DI T AK L GL +GA ++ +KVAS ++ GDHGST+ G+PLVC AV +
Sbjct: 242 DIXTSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKI 301
Query: 368 LASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD--VSATPVVDACRDSGLLVL 425
L +V+K Y +++L + + K +GLG G+ D V V+ C+++ LL++
Sbjct: 302 LENVNKLTPYLEQSLDELINEFDFCKKRKGLGFXQGLSLDKSVKVAKVIQKCQENALLLI 361
Query: 426 TAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
+ G+ N +R +PPLI+ ++ +D+ E L K L
Sbjct: 362 SCGE-NDLRFLPPLILQKEHIDEXSEKLRKAL 392
>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB0|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
Length = 420
Score = 294 bits (753), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 155/387 (40%), Positives = 235/387 (60%), Gaps = 13/387 (3%)
Query: 71 KLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL 130
++++ Y A + GKG +++D +G+EY+D + GIAV ALGH ++A+ Q L
Sbjct: 30 EVILPVYAPADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETL 89
Query: 131 THVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQ--RHSNPDSKE 188
H SN++ + P + L ++L+ +FA+RV F N+GTEANE A K AR + RHS +K
Sbjct: 90 WHTSNVFTNEPALRLGRKLIDATFAERVLFMNSGTEANETAFKLARHYACVRHSPFKTK- 148
Query: 189 PATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA 248
++F N+FHGR++ +++ + Y F P + V + ++ A K + T
Sbjct: 149 ----IIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAV-KAVMDDHTC 203
Query: 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFP 308
AV VEPIQGEGG+ +AT EFL+ LRD CD+ ALLVFDEVQCG+GRTG L+A+ HYG+ P
Sbjct: 204 AVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTP 263
Query: 309 DIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL 368
DI+T AK L GG P+ A L T+++ASA + G HGST+ G+PL C A A D I+ P L
Sbjct: 264 DILTSAKALGGGFPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEVL 323
Query: 369 ASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIE----FDVSATPVVDACRDSGLLV 424
+ K F + L+ + D+RG+GL+IG E + A + A ++G++V
Sbjct: 324 QGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKYKGRARDFLYAGAEAGVMV 383
Query: 425 LTAGKGNVVRLVPPLIISEQELDQAVE 451
L AG +V+R P L++ E ++ + ++
Sbjct: 384 LNAG-ADVMRFAPSLVVEEADIHEGMQ 409
>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1VEF|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
Length = 395
Score = 292 bits (747), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 156/398 (39%), Positives = 244/398 (61%), Gaps = 16/398 (4%)
Query: 63 KEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKA 122
+ ++EAEK L G YN+ +++ G+G +++DAEG EY+D G V LGHG+ + ++A
Sbjct: 10 RALLEAEKTLDSGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEA 69
Query: 123 VVDQANVLTHVSNMYYSIPQIELAKRLVAC--SFADRVFFSNTGTEANEAAIKFARKFQR 180
V QA L + + + E + L A +RVF N+GTEANEAA+KFAR
Sbjct: 70 VKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARA--- 126
Query: 181 HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRK 240
H+ +FV+ F GRTMG+L++T + YR PF P++ V F+ Y ++EA ++
Sbjct: 127 HTG------RKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKR 180
Query: 241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300
+ +TAAV +EP+QGEGG+ AT EFL+ R+ + GALL+ DE+Q G+GRTG +A
Sbjct: 181 AVDE-ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFA 239
Query: 301 HEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLD 360
EH+GI PDI+TLAK L GG+P+G A++ E+VA ++ G HG+TF G+PL A +A +
Sbjct: 240 FEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIR 299
Query: 361 KISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDAC-RD 419
+ ++ G +F E L+ +P +++VRG+GL++G+E A P + ++
Sbjct: 300 YLERTRLWERAAELGPWFMEKLRA--IPSPKIREVRGMGLMVGLELKEKAAPYIARLEKE 357
Query: 420 SGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
+L L AG V+R +PPL+I +++L++ VE + L
Sbjct: 358 HRVLALQAGP-TVIRFLPPLVIEKEDLERVVEAVRAVL 394
>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|B Chain B, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|C Chain C, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|D Chain D, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|E Chain E, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|F Chain F, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
Length = 433
Score = 237 bits (604), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 139/404 (34%), Positives = 208/404 (51%), Gaps = 6/404 (1%)
Query: 63 KEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKA 122
++ + E K Y+ PVVL KG +YD + Y D S + GH + + A
Sbjct: 30 EDYINNELKYGAHNYDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNA 89
Query: 123 VVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHS 182
+++QA LT S ++S+P + L D+V NTG EANE A K RK+ +
Sbjct: 90 MINQAKNLTICSRAFFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWG-YE 148
Query: 183 NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI 242
E + V N+F GRT+G ++ ++ + S F P P + V Y ++EA + +
Sbjct: 149 VKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEEL 208
Query: 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHE 302
+ A VEPIQGE G+ + +LQ + D C L V DEVQ GLGRTG L
Sbjct: 209 KDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVH 268
Query: 303 HYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK 361
HY + PD++ L K L+GG PI A L + + I G+HGST+ G+PL + + L+
Sbjct: 269 HYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNV 328
Query: 362 ISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDAC---R 418
+ N + K G F E LK++L + V+DVRG GL+ IEF V+D C +
Sbjct: 329 LINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLK 388
Query: 419 DSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 462
++GL+ +RL PPL I++++LD+ EI+ KT+ D
Sbjct: 389 ENGLITRDV-HDKTIRLTPPLCITKEQLDECTEIIVKTVKFFDE 431
>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From
Sulfolobus Tokodaii Strain7
Length = 419
Score = 236 bits (603), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 162/415 (39%), Positives = 224/415 (53%), Gaps = 56/415 (13%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVS-NMYY 138
P+V+ G+G +YD +G +YLD +SGI VN LG + IK ++Q L H + N +Y
Sbjct: 25 PLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAANDFY 84
Query: 139 SIPQIELAKRLVACS---FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
+IPQ+ELAK+LV S F +VFFSN+GTEA EA+IK + R ++
Sbjct: 85 NIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTGRKY----------IIA 134
Query: 196 FTNSFHGRTMGALALT-SKEHYRSPFEPVMPGVNFVEYGN-------------------- 234
F FHGRT G+++LT SK RS P MPGV V Y N
Sbjct: 135 FLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNR 194
Query: 235 -IEATR-----KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEV 288
IE L+ P + A +F EPIQGEGG K F L+ G LLV DEV
Sbjct: 195 VIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEV 254
Query: 289 QCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAG 347
Q GLGRTG L+A E++ PD++TLAK L GG +PIGA + + + G H +TF G
Sbjct: 255 QMGLGRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDL--DFKPGMHSNTFGG 312
Query: 348 SPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD 407
+ L C V+D + + L V++ G F E L Q LA DVRG+GL G+E++
Sbjct: 313 NALACAIGSKVIDIVKD--LLPHVNEIGKIFAEEL-QGLA-----DDVRGIGLAWGLEYN 364
Query: 408 VSAT--PVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460
++ GLL+L AG+ + +R++PPL+ISE+E Q ++IL K + V+
Sbjct: 365 EKKVRDRIIGESFKRGLLLLPAGR-SAIRVIPPLVISEEEAKQGLDILKKVIKVV 418
>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|B Chain B, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|C Chain C, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|D Chain D, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3NTJ|A Chain A, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|B Chain B, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|C Chain C, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|D Chain D, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
Length = 422
Score = 234 bits (596), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 139/409 (33%), Positives = 213/409 (52%), Gaps = 8/409 (1%)
Query: 60 RNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119
+++++ M E Y+ PVVL GKG +YD E R Y D S + GH D
Sbjct: 8 KSSQDYMNNELTYGAHNYDPIPVVLKRGKGVFVYDIEDRRYYDFLSAYSSVNQGHCHPDI 67
Query: 120 IKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA-DRVFFSNTGTEANEAAIKFARKF 178
+ A+++QA LT S ++S + + +R + F D+V NTG EA+E A K RK+
Sbjct: 68 LNAMINQAKKLTICSRAFFS-DSLGVCERYLTNLFGYDKVLMMNTGAEASETAYKLCRKW 126
Query: 179 QRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEAT 238
+ E + + + N+F GRT+G ++ ++ + ++ F P +P V Y ++EA
Sbjct: 127 G-YEVKKIPENSAKIIVCNNNFSGRTLGCVSASTDKKCKNNFGPFVPNFLKVPYDDLEAL 185
Query: 239 RKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL 298
K +Q A VEP+QGE G+ + + + C L V DEVQ GLGRTG L
Sbjct: 186 EKELQDPNVCAFIVEPVQGEAGVIVPSDSYFPGVASLCKKYNVLFVADEVQTGLGRTGKL 245
Query: 299 WAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIA 357
HYG+ PD++ L K L+GG PI A L + V + G+HGST+ G+PL +
Sbjct: 246 LCTHHYGVKPDVILLGKALSGGHYPISAILANDDVMLVLKPGEHGSTYGGNPLAAAICVE 305
Query: 358 VLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDAC 417
L + N + K G F + LK++L + V++VRG GL+ IEF V D C
Sbjct: 306 ALKVLINEKLCENADKLGAPFLQNLKEQLKDSKVVREVRGKGLLCAIEFKNDLVNVWDIC 365
Query: 418 ---RDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463
+++GL+ + VRL PPL I++++LD+ EI+ KT+ D N
Sbjct: 366 LKFKENGLITRSV-HDKTVRLTPPLCITKEQLDECTEIIVKTVKFFDDN 413
>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
pdb|3RUY|B Chain B, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
Length = 392
Score = 231 bits (589), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 137/390 (35%), Positives = 206/390 (52%), Gaps = 6/390 (1%)
Query: 63 KEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKA 122
K+++E Y+ P+V++ +G + D EG Y+DL S + GH I A
Sbjct: 1 KDIIELTDTYGANNYHPLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINA 60
Query: 123 VVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHS 182
++DQAN +T S ++S +++ + + V NTG EA E AIK AR++
Sbjct: 61 LIDQANRVTLTSRAFHSDQLGPWYEKVAKLTNKEMVLPMNTGAEAVETAIKTARRWAYDV 120
Query: 183 NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI 242
A E + ++FHGRTMGA++++S E Y+ F P++PG+ + YG++EA + I
Sbjct: 121 KKVEANRA-EIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGDLEALKAAI 179
Query: 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHE 302
P TAA +EPIQGE GI FL+ + C L V DE+Q GLGRTG ++A +
Sbjct: 180 TP-NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACD 238
Query: 303 HYGIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK 361
+ PD+ L L GG+ PI A + G HGSTF G+PL C +IA L+
Sbjct: 239 WDNVTPDMYILGXALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEV 298
Query: 362 ISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSG 421
+ + G LK+ NP + +VRG GL IGIE + A P + + +G
Sbjct: 299 LEEEKLTERSLQLGEKLVGQLKE--IDNPMITEVRGKGLFIGIELNEPARPYCEQLKAAG 356
Query: 422 LLVLTAGKGNVVRLVPPLIISEQELDQAVE 451
LL + NV+R+ PPL+ISE++L+ A +
Sbjct: 357 LLCKETHE-NVIRIAPPLVISEEDLEWAFQ 385
>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|B Chain B, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|C Chain C, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|D Chain D, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SFF|A Chain A, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|B Chain B, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|C Chain C, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|D Chain D, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
Length = 426
Score = 222 bits (565), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 144/428 (33%), Positives = 217/428 (50%), Gaps = 40/428 (9%)
Query: 61 NNKEVMEAEKKLL-VGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119
+NKE+M+ + + G P+ + C+++D EGREYLD + GIAV GH
Sbjct: 3 SNKELMQRRSQAIPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKV 62
Query: 120 IKAVVDQANVLTHVSNMYYSI-PQIELAKRL---VACSFADRVFFSNTGTEANEAAIKFA 175
+ AV Q L+H + P +EL + + V FA + TG+EA E A+K A
Sbjct: 63 VAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA 122
Query: 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF------ 229
R + S ++F+ ++HGRT LALT K + S +MPG +
Sbjct: 123 RAATKRSGT---------IAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPC 173
Query: 230 -----VEYGNIEATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG 280
E I + ++ + P AA+ +EP+QGEGG Y+++ F+Q LR CD+ G
Sbjct: 174 PLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHG 233
Query: 281 ALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD 340
+L+ DEVQ G GRTG L+A E G+ PD+ T AK +AGG P+ +V A+ G
Sbjct: 234 IMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG 293
Query: 341 HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGL 400
G T+AG+P+ C AA+ VL L + G K+ L ++P + DVRGLG
Sbjct: 294 LGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGA 353
Query: 401 IIGIEF---------DVSATP-VVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQA 449
+I IE D T +V RD GL++L+ G NV+R++ PL I + ++ Q
Sbjct: 354 MIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQG 413
Query: 450 VEILCKTL 457
+EI+ +
Sbjct: 414 LEIISQCF 421
>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
Length = 426
Score = 220 bits (560), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 143/428 (33%), Positives = 216/428 (50%), Gaps = 40/428 (9%)
Query: 61 NNKEVMEAEKKLL-VGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119
+NKE+M+ + + G P+ + C+++D EGREYLD + GIAV GH
Sbjct: 3 SNKELMQRRSQAIPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKV 62
Query: 120 IKAVVDQANVLTHVSNMYYSI-PQIELAKRL---VACSFADRVFFSNTGTEANEAAIKFA 175
+ AV Q L+H + P +EL + + V FA + TG+EA E A+K A
Sbjct: 63 VAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA 122
Query: 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF------ 229
R + S ++F+ ++HGRT LALT K + S +MPG +
Sbjct: 123 RAATKRSGT---------IAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPC 173
Query: 230 -----VEYGNIEATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG 280
E I + ++ + P AA+ +EP+QGEGG Y+++ F+Q LR CD+ G
Sbjct: 174 PLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHG 233
Query: 281 ALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD 340
+L+ DE Q G GRTG L+A E G+ PD+ T AK +AGG P+ +V A+ G
Sbjct: 234 IMLIADEAQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG 293
Query: 341 HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGL 400
G T+AG+P+ C AA+ VL L + G K+ L ++P + DVRGLG
Sbjct: 294 LGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGA 353
Query: 401 IIGIEF---------DVSATP-VVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQA 449
+I IE D T +V RD GL++L+ G NV+R++ PL I + ++ Q
Sbjct: 354 MIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQG 413
Query: 450 VEILCKTL 457
+EI+ +
Sbjct: 414 LEIISQCF 421
>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
Length = 426
Score = 219 bits (559), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 143/428 (33%), Positives = 216/428 (50%), Gaps = 40/428 (9%)
Query: 61 NNKEVMEAEKKLL-VGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119
+NKE+M+ + + G P+ + C+++D EGREYLD + GIAV GH
Sbjct: 3 SNKELMQRRSQAIPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKV 62
Query: 120 IKAVVDQANVLTHVSNMYYSI-PQIELAKRL---VACSFADRVFFSNTGTEANEAAIKFA 175
+ AV Q L+H + P +EL + + V FA + TG+EA E A+K A
Sbjct: 63 VAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA 122
Query: 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF------ 229
R + S ++F+ ++HGRT LALT K + S +MPG +
Sbjct: 123 RAATKRSGT---------IAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPC 173
Query: 230 -----VEYGNIEATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG 280
E I + ++ + P AA+ +EP+QG GG Y+++ F+Q LR CD+ G
Sbjct: 174 PLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGSGGFYASSPAFMQRLRALCDEHG 233
Query: 281 ALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD 340
+L+ DEVQ G GRTG L+A E G+ PD+ T AK +AGG P+ +V A+ G
Sbjct: 234 IMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG 293
Query: 341 HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGL 400
G T+AG+P+ C AA+ VL L + G K+ L ++P + DVRGLG
Sbjct: 294 LGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGA 353
Query: 401 IIGIEF---------DVSATP-VVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQA 449
+I IE D T +V RD GL++L+ G NV+R++ PL I + ++ Q
Sbjct: 354 MIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQG 413
Query: 450 VEILCKTL 457
+EI+ +
Sbjct: 414 LEIISQCF 421
>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|B Chain B, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|C Chain C, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|D Chain D, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
Length = 426
Score = 219 bits (557), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 143/428 (33%), Positives = 216/428 (50%), Gaps = 40/428 (9%)
Query: 61 NNKEVMEAEKKLL-VGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119
+NKE+M+ + + G P+ + C+++D EGREYLD + G AV GH
Sbjct: 3 SNKELMQRRSQAIPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGGQAVLNTGHLHPKV 62
Query: 120 IKAVVDQANVLTHVSNMYYSI-PQIELAKRL---VACSFADRVFFSNTGTEANEAAIKFA 175
+ AV Q L+H + P +EL + + V FA + TG+EA E A+K A
Sbjct: 63 VAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA 122
Query: 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF------ 229
R + S ++F+ ++HGRT LALT K + S +MPG +
Sbjct: 123 RAATKRSGT---------IAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPC 173
Query: 230 -----VEYGNIEATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG 280
E I + ++ + P AA+ +EP+QGEGG Y+++ F+Q LR CD+ G
Sbjct: 174 PLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHG 233
Query: 281 ALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD 340
+L+ DEVQ G GRTG L+A E G+ PD+ T AK +AGG P+ +V A+ G
Sbjct: 234 IMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG 293
Query: 341 HGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGL 400
G T+AG+P+ C AA+ VL L + G K+ L ++P + DVRGLG
Sbjct: 294 LGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGA 353
Query: 401 IIGIEF---------DVSATP-VVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQA 449
+I IE D T +V RD GL++L+ G NV+R++ PL I + ++ Q
Sbjct: 354 MIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQG 413
Query: 450 VEILCKTL 457
+EI+ +
Sbjct: 414 LEIISQCF 421
>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|B Chain B, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|C Chain C, Ornithine Aminotransferase Mutant Y85i
Length = 439
Score = 211 bits (537), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 138/404 (34%), Positives = 201/404 (49%), Gaps = 13/404 (3%)
Query: 61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWI 120
+ ++ E E K Y+ PV L GKG L+D EGR+Y D S I+ GH +
Sbjct: 39 TSDDIFEREYKYGAHNYHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIV 98
Query: 121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQR 180
A+ Q + LT S +Y+ E + + +V NTG EA E A K ARK+
Sbjct: 99 NALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGY 158
Query: 181 HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRK 240
K A + V +F GRT+ A++ ++ F P MPG + + Y ++ A +
Sbjct: 159 TVKGIQKYKA-KIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALER 217
Query: 241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300
+Q AA VEPIQGE G+ +L +R+ C L + DE+Q GL RTG A
Sbjct: 218 ALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLA 277
Query: 301 HEHYGIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVL 359
++ + PDI+ L K L+GGL P+ A L + + I G+HGST+ G+PL C AIA L
Sbjct: 278 VDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAAL 337
Query: 360 DKISNPAFLASVSKKGHYFKETLKQKLARNPH--VKDVRGLGLIIGIEF----DVSATPV 413
+ + + K G L+ +L + P V VRG GL+ I D A V
Sbjct: 338 EVLEEENLAENADKLGI----ILRNELMKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKV 393
Query: 414 VDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
RD+GLL G+++R PPL+I E EL +++EI+ KT+
Sbjct: 394 CLRLRDNGLLA-KPTHGDIIRFAPPLVIKEDELRESIEIINKTI 436
>pdb|1OAT|A Chain A, Ornithine Aminotransferase
pdb|1OAT|B Chain B, Ornithine Aminotransferase
pdb|1OAT|C Chain C, Ornithine Aminotransferase
pdb|2OAT|A Chain A, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|B Chain B, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|C Chain C, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
Length = 439
Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 142/405 (35%), Positives = 204/405 (50%), Gaps = 15/405 (3%)
Query: 61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLD-LSSGIAVNALGHGDADW 119
+ ++ E E K Y+ PV L GKG L+D EGR+Y D LSS AVN GH
Sbjct: 39 TSDDIFEREYKYGAHNYHPLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQ-GHCHPKI 97
Query: 120 IKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQ 179
+ A+ Q + LT S +Y+ E + + +V NTG EA E A K ARK+
Sbjct: 98 VNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWG 157
Query: 180 RHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATR 239
K A + V +F GRT+ A++ ++ F P MPG + + Y ++ A
Sbjct: 158 YTVKGIQKYKA-KIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALE 216
Query: 240 KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299
+ +Q AA VEPIQGE G+ +L +R+ C L + DE+Q GL RTG
Sbjct: 217 RALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWL 276
Query: 300 AHEHYGIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAV 358
A ++ + PDI+ L K L+GGL P+ A L + + I G+HGST+ G+PL C AIA
Sbjct: 277 AVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAA 336
Query: 359 LDKISNPAFLASVSKKGHYFKETLKQKLARNPH--VKDVRGLGLIIGIEF----DVSATP 412
L+ + + K G L+ +L + P V VRG GL+ I D A
Sbjct: 337 LEVLEEENLAENADKLGI----ILRNELMKLPSDVVTAVRGKGLLNAIVIKETKDWDAWK 392
Query: 413 VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
V RD+GLL G+++R PPL+I E EL +++EI+ KT+
Sbjct: 393 VCLRLRDNGLLA-KPTHGDIIRFAPPLVIKEDELRESIEIINKTI 436
>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|B Chain B, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|C Chain C, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|1GBN|A Chain A, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|B Chain B, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|C Chain C, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
Length = 402
Score = 209 bits (533), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 142/402 (35%), Positives = 203/402 (50%), Gaps = 15/402 (3%)
Query: 64 EVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLD-LSSGIAVNALGHGDADWIKA 122
++ E E K Y+ PV L GKG L+D EGR+Y D LSS AVN GH + A
Sbjct: 5 DIFEREYKYGAHNYHPLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQ-GHCHPKIVNA 63
Query: 123 VVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHS 182
+ Q + LT S +Y+ E + + +V NTG EA E A K ARK+
Sbjct: 64 LKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTV 123
Query: 183 NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI 242
K A + V +F GRT+ A++ ++ F P MPG + + Y ++ A + +
Sbjct: 124 KGIQKYKA-KIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERAL 182
Query: 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHE 302
Q AA VEPIQGE G+ +L +R+ C L + DE+Q GL RTG A +
Sbjct: 183 QDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVD 242
Query: 303 HYGIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK 361
+ + PDI+ L K L+GGL P+ A L + + I G+HGST+ G+PL C AIA L+
Sbjct: 243 YENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEV 302
Query: 362 ISNPAFLASVSKKGHYFKETLKQKLARNPH--VKDVRGLGLIIGIEF----DVSATPVVD 415
+ + K G L+ +L + P V VRG GL+ I D A V
Sbjct: 303 LEEENLAENADKLGI----ILRNELMKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCL 358
Query: 416 ACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
RD+GLL G+++R PPL+I E EL +++EI+ KT+
Sbjct: 359 RLRDNGLLA-KPTHGDIIRFAPPLVIKEDELRESIEIINKTI 399
>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|B Chain B, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|C Chain C, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
Length = 439
Score = 204 bits (518), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 136/404 (33%), Positives = 199/404 (49%), Gaps = 13/404 (3%)
Query: 61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWI 120
+ ++ E E K + PV L GKG L+D EGR+Y D S I+ GH +
Sbjct: 39 TSDDIFEREYKYGAHNAHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIV 98
Query: 121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQR 180
A+ Q + LT S +Y+ E + + +V NTG EA E A K ARK+
Sbjct: 99 NALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGY 158
Query: 181 HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRK 240
K A + V +F GRT+ A++ ++ F P MPG + + Y ++ A +
Sbjct: 159 TVKGIQKYKA-KIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALER 217
Query: 241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300
+Q AA VEPIQGE G+ +L +R+ C L + DE+Q GL RTG A
Sbjct: 218 ALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLA 277
Query: 301 HEHYGIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVL 359
++ + PDI+ L K L+GGL P+ A L + + I G+H ST+ G+PL C AIA L
Sbjct: 278 VDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAAL 337
Query: 360 DKISNPAFLASVSKKGHYFKETLKQKLARNPH--VKDVRGLGLIIGIEF----DVSATPV 413
+ + + K G L+ +L + P V VRG GL+ I D A V
Sbjct: 338 EVLEEENLAENADKLGI----ILRNELMKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKV 393
Query: 414 VDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
RD+GLL G+++R PPL+I E EL +++EI+ KT+
Sbjct: 394 CLRLRDNGLLA-KPTHGDIIRFAPPLVIKEDELRESIEIINKTI 436
>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt
From Mycobacterium Marinum Covalently Bound To Pyridoxal
Phosphate
Length = 467
Score = 184 bits (468), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 132/414 (31%), Positives = 190/414 (45%), Gaps = 46/414 (11%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
PV + G + DA+G +DL SGIAV +G+ + AV DQ TH M
Sbjct: 61 PVFVVRAGGGIVEDADGNRLIDLGSGIAVTTIGNSAPRVVDAVRDQVEQFTHTCFMVTPY 120
Query: 141 PQI----ELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196
Q E R+ S R N+G EA E +IK AR R V+F
Sbjct: 121 EQYVAVAEQLNRITPGSGEKRTVLFNSGAEAVENSIKVARAHTRKQ---------AVVAF 171
Query: 197 TNSFHGRTMGALALTSKEH-YRSPFEPVMPGV----------------NFVEYGNIEATR 239
++HGRT +ALT+K Y+S F P P + + G + A R
Sbjct: 172 DYAYHGRTNLTMALTAKSMPYKSGFGPFAPEIYRAPVSYPYRDNLLDKDIATDGELAAER 231
Query: 240 ------KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293
K I AAV +EPI GEGG FL L+ C D + + DEVQ G
Sbjct: 232 AINLIDKQIGAANLAAVIIEPIAGEGGFIVPADGFLPALQRWCRDNDVVFIADEVQTGFA 291
Query: 294 RTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCN 353
RTG ++A +H + PD++ A +A G P+ A ++ A + G TF G+P+ C
Sbjct: 292 RTGAMFACDHENVEPDLIVTAXGIADGFPLSAVTGRAEIMDAPHTSGLGGTFGGNPVACA 351
Query: 354 AAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPV 413
AA+A ++ I + + + L + A + + DVRG G +I +E S T
Sbjct: 352 AALATIETIERDGMVERARQIERLVMDRLLRLQAADDRLGDVRGRGAMIAMELVKSGTAE 411
Query: 414 VDAC---------RDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTL 457
DA +G++VLT G GNV+RL+PPL IS++ L + ++ILC+ L
Sbjct: 412 PDAALTQKLAAAAHAAGVIVLTCGMFGNVIRLLPPLTISDELLSEGLDILCQIL 465
>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|B Chain B, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|C Chain C, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|D Chain D, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
Length = 452
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 125/409 (30%), Positives = 198/409 (48%), Gaps = 47/409 (11%)
Query: 82 VVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIP 141
V A +GC + D +G+ YLD SG+ G+G + +A Q L++ P
Sbjct: 33 TVGAKAEGCWVEDIQGKRYLDGXSGLWCVNSGYGRKELAEAAYKQLQTLSYFPXSQSHEP 92
Query: 142 QIELAKRLVACSFADRV-FFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSF 200
I+LA++L + V FFSN+G+EANE A K AR++ + +F S +
Sbjct: 93 AIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPHR---YKFXSRYRGY 149
Query: 201 HGRTMGALALTSKEHYRSPFEPV--------------MPGVNFVEYGNIEATRKL----- 241
HG T A T + R +EP PG+ ++E +++
Sbjct: 150 HGNTXATXAATGQAQRRYQYEPFASGFLHVTPPDCYRXPGIERENIYDVECVKEVDRVXT 209
Query: 242 IQPGKTAAVFV-EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300
+ +T A F+ EPI GGI A +++ + + + C GALL+ DEV CG GRTG +
Sbjct: 210 WELSETIAAFIXEPIITGGGILXAPQDYXKAVHETCQKHGALLISDEVICGFGRTGKAFG 269
Query: 301 HEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAIN------YGDHGSTFAGSPLVCN 353
+Y + PDI+T AK + LP+ A V ++ A + H +TF G+P C
Sbjct: 270 FXNYDVKPDIITXAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACA 329
Query: 354 AAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF------- 406
A+ L+ I N + ++ G E LK+++ +P V D+RG GL++GIE
Sbjct: 330 LALKNLEIIENENLIERSAQXGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETK 389
Query: 407 ----DVSATPVVDACRDSGLLV-----LTAGKGNVVRLVPPLIISEQEL 446
+ VV+AC++ GL++ TAG N++ L PPL+IS +E+
Sbjct: 390 EPIDNDKIASVVNACKEKGLIIGRNGXTTAGYNNILTLAPPLVISSEEI 438
>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 451
Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 133/420 (31%), Positives = 195/420 (46%), Gaps = 46/420 (10%)
Query: 75 GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS 134
G PV G + D +G +DL SGIAV +G+ ++AV Q TH
Sbjct: 38 GVGTTMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTC 97
Query: 135 NMYYS----IPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190
M + E RL R N+G+EA E A+K AR + +PA
Sbjct: 98 FMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSH-------THKPA 150
Query: 191 TEFVSFTNSFHGRTMGALALTSK-------------EHYRSP----FEPVMPGVNFVEYG 233
V+F +++HGRT +ALT+K E YR+P F G G
Sbjct: 151 V--VAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDG 208
Query: 234 NIEATR------KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDE 287
+ A R K I AAV +EPIQGEGG FL L D C + + DE
Sbjct: 209 ELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADE 268
Query: 288 VQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAG 347
VQ G RTG ++A EH GI PD++ A +AGGLP+ A ++ + + G T+ G
Sbjct: 269 VQTGFARTGAMFACEHEGIDPDLIVTAXGIAGGLPLSAVTGRAEIMDSPHVSGLGGTYGG 328
Query: 348 SPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD 407
+P+ C AA+A ++ I + +A + K+ L + A + + DVRG G +I +E
Sbjct: 329 NPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELV 388
Query: 408 VSATPVVDA---------CRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTL 457
+ T DA +G++VL+ G GNVVR +PPL I + L++ +++L + L
Sbjct: 389 KAGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVL 448
>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 453
Score = 179 bits (454), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 133/405 (32%), Positives = 186/405 (45%), Gaps = 40/405 (9%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM---Y 137
PV + + G L DA+G + +D SGIAV +G+ + AV Q TH M Y
Sbjct: 51 PVYVVAAGGGVLADADGNQLIDFGSGIAVTTVGNSAPAVVDAVTQQVAAFTHTCFMVTPY 110
Query: 138 YSIPQI-ELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196
++ E RL R N+G EA E A+K AR + R V F
Sbjct: 111 EGYVKVAEHLNRLTPGDHEKRTALFNSGAEAVENAVKIARAYTRRQ---------AVVVF 161
Query: 197 TNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNFVEYG----------------NIEATR 239
+++HGRT +A+T+K Y+ F P V V ++
Sbjct: 162 DHAYHGRTNLTMAMTAKNQPYKHGFGPFANEVYRVPTSYPFRDGETDGAAAAAHALDLIN 221
Query: 240 KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299
K + AAV +EP+ GEGG FL L+ C D GA+ V DEVQ G RTG L+
Sbjct: 222 KQVGADNVAAVVIEPVHGEGGFVVPAPGFLGALQKWCTDNGAVFVADEVQTGFARTGALF 281
Query: 300 AHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVL 359
A EH + PD++ AK +AGGLP+ A ++ G G T+ G+PL C AA+AV+
Sbjct: 282 ACEHENVVPDLIVTAKGIAGGLPLSAVTGRAEIMDGPQSGGLGGTYGGNPLACAAALAVI 341
Query: 360 DKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATP------- 412
D I +A G L A +P + +VRG G +I +E T
Sbjct: 342 DTIERENLVARARAIGETMLSRLGALAAADPRIGEVRGRGAMIAVELVKPGTTEPDADLT 401
Query: 413 --VVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILC 454
V A GL+VLT G GNV+R +PPL + + LD+ ++IL
Sbjct: 402 KRVAAAAHAQGLVVLTCGTYGNVLRFLPPLSMPDHLLDEGLDILA 446
>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a
Length = 431
Score = 169 bits (427), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 128/424 (30%), Positives = 194/424 (45%), Gaps = 57/424 (13%)
Query: 75 GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS 134
GT+ P+++ KG +YDA+GR LD +SG LGH + + + + A L H+
Sbjct: 20 GTFE--PMIIERAKGSFVYDADGRAILDFTSGAMSAVLGHCHPEIVSVIGEYAGKLDHLF 77
Query: 135 NMYYSIPQIELAKRL--VACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192
+ S P ++LA RL + DR +TG E+NEAAI+ A+ E
Sbjct: 78 SEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGK---------YE 128
Query: 193 FVSFTNSFHGRT-------------------MGALALTSKEHYRSPFEPVMPGVNFVEYG 233
V F S+HG T +G+ A+ + YR FE +
Sbjct: 129 IVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFER---NGAYDYLA 185
Query: 234 NIEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC 290
++ LI G AA EPI GGI ++ L+ C+ G LL+ DE Q
Sbjct: 186 ELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQT 245
Query: 291 GLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVT----EKVASAINYGDHGSTFA 346
G+GRTG ++A + G+ PDI+TL+K L GLP+ AA+VT E+ A + Y + +T
Sbjct: 246 GVGRTGTMFACQRDGVTPDILTLSKTLGAGLPL-AAIVTSAAIEERAHELGYLFY-TTHV 303
Query: 347 GSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF 406
PL + VLD + +A + G + L + R + DVRG GL++G+E
Sbjct: 304 SDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEI 363
Query: 407 ----------DVSATPVVDACRDSGL---LVLTAGKGNVVRLVPPLIISEQELDQAVEIL 453
D + C + GL +V G G V R+ PPL +SE E+D + +L
Sbjct: 364 VKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLL 423
Query: 454 CKTL 457
+ +
Sbjct: 424 GQAI 427
>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With 5pa
pdb|1D7S|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Dcs
pdb|1D7U|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Lcs
pdb|1D7V|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Nma
Length = 433
Score = 168 bits (426), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 128/423 (30%), Positives = 195/423 (46%), Gaps = 55/423 (13%)
Query: 75 GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS 134
GT+ P+++ KG +YDA+GR LD +SG LGH + + + + A L H+
Sbjct: 22 GTFE--PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLF 79
Query: 135 NMYYSIPQIELAKRL--VACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192
+ S P ++LA RL + DR +TG E+NEAAI+ A+ E
Sbjct: 80 SGMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGK---------YE 130
Query: 193 FVSFTNSFHGRT-------------------MGALALTSKEHYRSPFEP--VMPGVNFVE 231
V F S+HG T +G+ A+ + YR FE + ++
Sbjct: 131 IVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELD 190
Query: 232 YGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291
Y R+ G AA EPI GGI ++ L+ C+ G LL+ DE Q G
Sbjct: 191 YAFDLIDRQ--SSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTG 248
Query: 292 LGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVT----EKVASAINYGDHGSTFAG 347
+GRTG ++A + G+ PDI+TL+K L GLP+ AA+VT E+ A + Y + +T
Sbjct: 249 VGRTGTMFACQRDGVTPDILTLSKTLGAGLPL-AAIVTSAAIEERAHELGYLFY-TTHVS 306
Query: 348 SPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF- 406
PL + VLD + +A + G + L + R + DVRG GL++G+E
Sbjct: 307 DPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIV 366
Query: 407 ---------DVSATPVVDACRDSGL---LVLTAGKGNVVRLVPPLIISEQELDQAVEILC 454
D + C + GL +V G G V R+ PPL +SE E+D + +L
Sbjct: 367 KDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLG 426
Query: 455 KTL 457
+ +
Sbjct: 427 QAI 429
>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Aminocyclopentanephosphonate
pdb|1M0O|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Methylpropanephosphonate
pdb|1M0P|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Phenylethanephosphonate
pdb|1M0Q|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
S- 1-Aminoethanephosphonate
pdb|1ZC9|A Chain A, The Crystal Structure Of Dialkylglycine Decarboxylase
Complex With Pyridoxamine 5-phosphate
pdb|1ZOB|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylases Bound
With Calcium Ion
pdb|1ZOD|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylase Bound
With Cesium Ion
pdb|1DKA|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
pdb|2DKB|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
Length = 433
Score = 168 bits (425), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 128/423 (30%), Positives = 195/423 (46%), Gaps = 55/423 (13%)
Query: 75 GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS 134
GT+ P+++ KG +YDA+GR LD +SG LGH + + + + A L H+
Sbjct: 22 GTFE--PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLF 79
Query: 135 NMYYSIPQIELAKRL--VACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192
+ S P ++LA RL + DR +TG E+NEAAI+ A+ E
Sbjct: 80 SEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGK---------YE 130
Query: 193 FVSFTNSFHGRT-------------------MGALALTSKEHYRSPFEP--VMPGVNFVE 231
V F S+HG T +G+ A+ + YR FE + ++
Sbjct: 131 IVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELD 190
Query: 232 YGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291
Y R+ G AA EPI GGI ++ L+ C+ G LL+ DE Q G
Sbjct: 191 YAFDLIDRQ--SSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTG 248
Query: 292 LGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVT----EKVASAINYGDHGSTFAG 347
+GRTG ++A + G+ PDI+TL+K L GLP+ AA+VT E+ A + Y + +T
Sbjct: 249 VGRTGTMFACQRDGVTPDILTLSKTLGAGLPL-AAIVTSAAIEERAHELGYLFY-TTHVS 306
Query: 348 SPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF- 406
PL + VLD + +A + G + L + R + DVRG GL++G+E
Sbjct: 307 DPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIV 366
Query: 407 ---------DVSATPVVDACRDSGL---LVLTAGKGNVVRLVPPLIISEQELDQAVEILC 454
D + C + GL +V G G V R+ PPL +SE E+D + +L
Sbjct: 367 KDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLG 426
Query: 455 KTL 457
+ +
Sbjct: 427 QAI 429
>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
pdb|1DGE|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
Length = 432
Score = 167 bits (424), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 128/424 (30%), Positives = 194/424 (45%), Gaps = 57/424 (13%)
Query: 75 GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS 134
GT+ P+++ KG +YDA+GR LD +SG LGH + + + + A L H+
Sbjct: 21 GTFE--PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLF 78
Query: 135 NMYYSIPQIELAKRL--VACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192
+ S P ++LA RL + DR +TG E+NEAAI+ A+ E
Sbjct: 79 SGMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGK---------YE 129
Query: 193 FVSFTNSFHGRT-------------------MGALALTSKEHYRSPFEPVMPGVNFVEYG 233
V F S+HG T +G+ A+ + YR FE +
Sbjct: 130 IVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFER---NGAYDYLA 186
Query: 234 NIEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC 290
++ LI G AA EPI GGI ++ L+ C+ G LL+ DE Q
Sbjct: 187 ELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQT 246
Query: 291 GLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVT----EKVASAINYGDHGSTFA 346
G+GRTG ++A + G+ PDI+TL+K L GLP+ AA+VT E+ A + Y + +T
Sbjct: 247 GVGRTGTMFACQRDGVTPDILTLSKTLGAGLPL-AAIVTSAAIEERAHELGYLFY-TTHV 304
Query: 347 GSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF 406
PL + VLD + +A + G + L + R + DVRG GL++G+E
Sbjct: 305 SDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEI 364
Query: 407 ----------DVSATPVVDACRDSGL---LVLTAGKGNVVRLVPPLIISEQELDQAVEIL 453
D + C + GL +V G G V R+ PPL +SE E+D + +L
Sbjct: 365 VKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLL 424
Query: 454 CKTL 457
+ +
Sbjct: 425 GQAI 428
>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|B Chain B, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|C Chain C, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|D Chain D, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
Length = 453
Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 144/422 (34%), Positives = 207/422 (49%), Gaps = 55/422 (13%)
Query: 75 GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS 134
G + APV G + DA+G ++DL +GIAV +G A+ DQA TH
Sbjct: 41 GVGSTAPVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTC 100
Query: 135 NMYYSIPQ-IELAKRLVACSFAD---RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190
M Q +++A+ L A + D R N+G EA E AIK AR + PA
Sbjct: 101 FMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARL-------ATGRPA 153
Query: 191 TEFVSFTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNFV--------EYG--NIEATR 239
V+F N++HGRT +ALT+K Y+S F P P V + E G EA R
Sbjct: 154 --VVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAAR 211
Query: 240 KLIQPGKT-------AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292
+ I +T AA+ +EPIQGEGG FL L + G + + DEVQ G
Sbjct: 212 RAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGF 271
Query: 293 GRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVC 352
RTG +A EH GI PDI+T+A +AGG+P+ A ++ A+ G G T+ G+P+ C
Sbjct: 272 ARTGAWFASEHEGIVPDIVTMAXGIAGGMPLSAVTGRAELMDAVYAGGLGGTYGGNPVTC 331
Query: 353 NAAIA---VLDKISNP----AFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIE 405
AA+A V+ ++ P A ASV+ + E + + +VRG G ++ IE
Sbjct: 332 AAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDI-------IGEVRGRGAMLAIE 384
Query: 406 F--------DVSATPVVDA-CRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCK 455
D + T + A G+L+LT G GNV+RL+PPL+I + LD+ + L
Sbjct: 385 IVKPGTLEPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSD 444
Query: 456 TL 457
+
Sbjct: 445 II 446
>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
pdb|3DU4|B Chain B, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
Length = 448
Score = 159 bits (402), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 126/428 (29%), Positives = 206/428 (48%), Gaps = 57/428 (13%)
Query: 77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM 136
Y+ P+++ SG G K+ D G+EY D S + +N GH + A+ Q + H + +
Sbjct: 23 YDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLL 82
Query: 137 -YYSIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEF 193
++P +LA+ L+ S RVF+S++G EA E A+K A ++ ++ K+ +F
Sbjct: 83 GMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQ---KF 139
Query: 194 VSFTNSFHGRTMGALALTSKEHYRSPFEPVM--------PGVNFVEYGNIEATR------ 239
++ N +HG T+GA+++ S E + + P+M P V E G+ + R
Sbjct: 140 IAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQXLRE 199
Query: 240 --KLIQPG--KTAAVFVEP-IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR 294
+L++ + AA+ +E +QG G+ + +L +R+ C L++ DEV G GR
Sbjct: 200 LAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGR 259
Query: 295 TGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD--------HGSTF 345
TG ++A EH + PD+M K + GG LPI TE + A Y D HG ++
Sbjct: 260 TGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAF-YDDYENLKTFFHGHSY 318
Query: 346 AGSPLVCNAAIAVLDKISNPAFLASV---SKKGHYFKETLKQKLARNPHVKDVRGLGLII 402
G+ L C A+ L + + V SKK H+ L Q L PHV D+R LG +
Sbjct: 319 TGNQLGCAVALENLALFESENIVEQVAEKSKKLHF----LLQDLHALPHVGDIRQLGFMC 374
Query: 403 GIEFDVS-------------ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQA 449
G E S V R+ G+ LT G+V+ +PPL + +EL +
Sbjct: 375 GAELVRSKETKEPYPADRRIGYKVSLKMRELGM--LTRPLGDVIAFLPPLASTAEELSEM 432
Query: 450 VEILCKTL 457
V I+ + +
Sbjct: 433 VAIMKQAI 440
>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DOD|B Chain B, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DRD|A Chain A, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
pdb|3DRD|B Chain B, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
Length = 448
Score = 159 bits (401), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 126/424 (29%), Positives = 204/424 (48%), Gaps = 57/424 (13%)
Query: 77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM 136
Y+ P+++ SG G K+ D G+EY D S + +N GH + A+ Q + H + +
Sbjct: 23 YDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLL 82
Query: 137 -YYSIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEF 193
++P +LA+ L+ S RVF+S++G EA E A+K A ++ ++ K+ +F
Sbjct: 83 GMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQ---KF 139
Query: 194 VSFTNSFHGRTMGALALTSKEHYRSPFEPVM--------PGVNFVEYGNIEATR------ 239
++ N +HG T+GA+++ S E + + P+M P V E G+ + R
Sbjct: 140 IAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRE 199
Query: 240 --KLIQPG--KTAAVFVEP-IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR 294
+L++ + AA+ +E +QG G+ + +L +R+ C L++ DEV G GR
Sbjct: 200 LAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGR 259
Query: 295 TGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD--------HGSTF 345
TG ++A EH + PD+M K + GG LPI TE + A Y D HG ++
Sbjct: 260 TGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAF-YDDYENLKTFFHGHSY 318
Query: 346 AGSPLVCNAAIAVLDKISNPAFLASV---SKKGHYFKETLKQKLARNPHVKDVRGLGLII 402
G+ L C A+ L + + V SKK H+ L Q L PHV D+R LG +
Sbjct: 319 TGNQLGCAVALENLALFESENIVEQVAEKSKKLHF----LLQDLHALPHVGDIRQLGFMC 374
Query: 403 GIEFDVS-------------ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQA 449
G E S V R+ G+ LT G+V+ +PPL + +EL +
Sbjct: 375 GAELVRSKETKEPYPADRRIGYKVSLKMRELGM--LTRPLGDVIAFLPPLASTAEELSEM 432
Query: 450 VEIL 453
V I+
Sbjct: 433 VAIM 436
>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|B Chain B, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|C Chain C, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|D Chain D, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|E Chain E, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|F Chain F, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|G Chain G, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|H Chain H, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|I Chain I, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|J Chain J, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|K Chain K, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|L Chain L, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATQ|A Chain A, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|B Chain B, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|C Chain C, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|D Chain D, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|E Chain E, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|F Chain F, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|G Chain G, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|H Chain H, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|I Chain I, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|J Chain J, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|K Chain K, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|L Chain L, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
Length = 456
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 137/425 (32%), Positives = 206/425 (48%), Gaps = 55/425 (12%)
Query: 75 GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS 134
G + PV + G + D +G ++DL SGIAV ++G D + AV + A TH
Sbjct: 41 GVASGVPVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTHTC 100
Query: 135 NMYYS----IPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190
M + E RL A R N+G EA E A+K AR + D+
Sbjct: 101 FMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVAR---LATGRDA---- 153
Query: 191 TEFVSFTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNFV-----------EYGNIEAT 238
V+F +++HGRT +ALT+K Y++ F P P V + E EA
Sbjct: 154 --VVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAA 211
Query: 239 RKLI-----QPG--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291
++ I Q G + AA+ +EPIQGEGG + FL L + + G + + DEVQ G
Sbjct: 212 KRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSG 271
Query: 292 LGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLV 351
RTG +A +H G+ PDI+T+AK +AGGLP+ A + A++ G G T+ G+P+
Sbjct: 272 FCRTGEWFAVDHEGVVPDIITMAKGIAGGLPLSAITGRADLLDAVHPGGLGGTYGGNPVA 331
Query: 352 CNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLAR---------NPHVKDVRGLGLII 402
C AA+A +D + ++ + + +E KL V D+RG G ++
Sbjct: 332 CAAALAAIDTMEQ----HDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAML 387
Query: 403 GIEF--DVSATP-------VVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEI 452
IE S P V AC G+++LT G GNV+RL+PPL+IS++ L +E+
Sbjct: 388 AIELVQPGSKEPNAELTKAVAAACLKEGVIILTCGTYGNVIRLLPPLVISDELLIDGLEV 447
Query: 453 LCKTL 457
L +
Sbjct: 448 LAAAI 452
>pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6R|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6T|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6U|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A6U|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A72|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4AH3|A Chain A, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|B Chain B, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|C Chain C, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|D Chain D, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
Length = 459
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 116/416 (27%), Positives = 198/416 (47%), Gaps = 45/416 (10%)
Query: 83 VLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQ 142
V+ G+G L+D+EG + +D +G+ +G+G D+ +A Q L + + +
Sbjct: 35 VMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHP 94
Query: 143 --IELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN 198
+EL+ L + A DRVF++N+G+E+ + I+ R R+ + K + N
Sbjct: 95 AVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVR---RYWDVQGKPEKKTLIGRWN 151
Query: 199 SFHGRTMGALALTSKEHYRSPFEPVMPGVNFVE---------------YGNIEA---TRK 240
+HG T+G +L ++ + +PG+ +E +G + A K
Sbjct: 152 GYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEK 211
Query: 241 LIQPG--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL 298
+++ G K AA EPIQG GG+ + + C LLV DEV CG GRTG
Sbjct: 212 ILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEW 271
Query: 299 WAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG---DHGSTFAGSPLVCNA 354
+ H+H+G PD+ T AK L+ G LPIGA V ++VA + G +HG T++G P+
Sbjct: 272 FGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAV 331
Query: 355 AIAVLDKISNPAFLASVSKK-GHYFKETLKQKLARNPHVKDVRGLGLIIGI--------- 404
A A + + + + V G Y ++ ++ +R HV DVRG+G++
Sbjct: 332 AHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKR 391
Query: 405 EFDVSATPVVDACRDSGL---LVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
E + CRD L++ A ++V PPL+++ E+D+ + + + L
Sbjct: 392 ELFPDFGEIGTLCRDIFFRNNLIMRACGDHIVS-APPLVMTRAEVDEMLAVAERCL 446
>pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
pdb|3DXW|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
Length = 452
Score = 142 bits (358), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 126/422 (29%), Positives = 198/422 (46%), Gaps = 54/422 (12%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS- 139
P+ ++ G+G +L + GRE +DLS +LG+G + AV A + + S
Sbjct: 39 PLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASN 98
Query: 140 IPQIELAKRLVACSF----ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
P + LA+RL+A SF +++F ++G++ANEAA + K S ++
Sbjct: 99 APAVTLAERLLA-SFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSG---------VIA 148
Query: 196 FTNSFHGRTMGALALTSKE--------------HYRSPFEPVM--PGVNFVEYGNIEATR 239
F ++HG T+G++A + Y P+ P P + + T
Sbjct: 149 FAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAIL---TLLTE 205
Query: 240 KL--IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY 297
KL + G A F+EPIQ +GG+ FL+ D C G L+V DEV+ GL R+G
Sbjct: 206 KLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGR 265
Query: 298 LWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKV---ASAINYGDHGSTFAGSPLVCNA 354
L EH G PDI+ L K L GGLP+ A + ++ ASA T G+P+ A
Sbjct: 266 LHCFEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASAFAM----QTLHGNPISAAA 321
Query: 355 AIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF-------- 406
+AVL+ I A +KG ++ L + R+P + D+RG GL G+E
Sbjct: 322 GLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSRE 381
Query: 407 --DVSATPVVDACRDSGLLVLTAG-KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463
++ GL+V G GNV+ PPL I+E ++ +A+++L + L +
Sbjct: 382 PARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSELSAV 441
Query: 464 SN 465
SN
Sbjct: 442 SN 443
>pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|2ZUK|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|3DXV|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
pdb|3DXV|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
Length = 439
Score = 142 bits (358), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 126/422 (29%), Positives = 198/422 (46%), Gaps = 54/422 (12%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS- 139
P+ ++ G+G +L + GRE +DLS +LG+G + AV A + + S
Sbjct: 26 PLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASN 85
Query: 140 IPQIELAKRLVACSF----ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
P + LA+RL+A SF +++F ++G++ANEAA + K S ++
Sbjct: 86 APAVTLAERLLA-SFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSG---------VIA 135
Query: 196 FTNSFHGRTMGALALTSKE--------------HYRSPFEPVM--PGVNFVEYGNIEATR 239
F ++HG T+G++A + Y P+ P P + + T
Sbjct: 136 FAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAIL---TLLTE 192
Query: 240 KL--IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY 297
KL + G A F+EPIQ +GG+ FL+ D C G L+V DEV+ GL R+G
Sbjct: 193 KLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGR 252
Query: 298 LWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKV---ASAINYGDHGSTFAGSPLVCNA 354
L EH G PDI+ L K L GGLP+ A + ++ ASA T G+P+ A
Sbjct: 253 LHCFEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASAFAM----QTLHGNPISAAA 308
Query: 355 AIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF-------- 406
+AVL+ I A +KG ++ L + R+P + D+RG GL G+E
Sbjct: 309 GLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSRE 368
Query: 407 --DVSATPVVDACRDSGLLVLTAG-KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 463
++ GL+V G GNV+ PPL I+E ++ +A+++L + L +
Sbjct: 369 PARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSELSAV 428
Query: 464 SN 465
SN
Sbjct: 429 SN 430
>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
pdb|3HMU|B Chain B, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
Length = 472
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 114/414 (27%), Positives = 195/414 (47%), Gaps = 43/414 (10%)
Query: 83 VLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS--I 140
V+ +G L D+EG E LD +G+ +G+G + + Q L + + + + +
Sbjct: 40 VITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFKTTHV 99
Query: 141 PQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN 198
P I LA++L + D VFF+ G+EAN+ I+ R + ++ K T +S N
Sbjct: 100 PAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEK---TVIISRKN 156
Query: 199 SFHGRTMGALAL--TSKEHYRSPFEPVMPGVN----FVEYGNI-----------EATRKL 241
++HG T+ + AL + H +S P + +N + E G++ E +
Sbjct: 157 AYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAI 216
Query: 242 IQPG--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299
++ G + AA EP+QG GG+ A + ++ CD LL+ DEV CG GRTG +
Sbjct: 217 LELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWF 276
Query: 300 AHEHYGIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAI 356
+ GI P IMT+AK L+ G PIG ++V ++VA I + HG T++G P+ A+
Sbjct: 277 GTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVAL 336
Query: 357 AVLDKISNPAFLASVSK-KGHYFKETLKQKLARNPHVKDVRGLGLIIGI----------E 405
L + L V Y KE + L +P V + + +G++ I +
Sbjct: 337 ENLRILEEENILDHVRNVAAPYLKEKW-EALTDHPLVGEAKIVGMMASIALTPNKASRAK 395
Query: 406 FDVSATPVVDACRDSGLL--VLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 457
F + CR+ ++ G+ + + PPL+I+ E+D+ + K+L
Sbjct: 396 FASEPGTIGYICRERCFANNLIMRHVGDRMIISPPLVITPAEIDEMFVRIRKSL 449
>pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
pdb|3NUI|B Chain B, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
Length = 478
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 120/428 (28%), Positives = 185/428 (43%), Gaps = 55/428 (12%)
Query: 77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT--HVS 134
+ R VV+ G+G + D GR YLD +SG+ G I A Q H
Sbjct: 40 HQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAF 99
Query: 135 NMYYSIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQR-HSNPDSKEPAT 191
S + L+++LV S D RVF++N+G+EAN+ +K P ++ T
Sbjct: 100 FGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILT 159
Query: 192 EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGV------NFVEYGN----------- 234
+ N++HG T + ++T K Y S F +PG ++ YG
Sbjct: 160 RW----NAYHGVTAVSASMTGKP-YNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVAR 214
Query: 235 ----IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC 290
+E T + A F EP+ G GG+ K + Q + ++ DEV C
Sbjct: 215 LARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVIC 274
Query: 291 GLGRTGYLWAHEHYGIFPDIMTLAKPL-AGGLPIGAALV-------TEKVASAINYGDHG 342
G GRTG W Y PD + +K L AG P+GA ++ E AI HG
Sbjct: 275 GFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHG 334
Query: 343 STFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLII 402
T +G P+ C A+ +D + N +V + F+E LK +A P++ + RG+G +
Sbjct: 335 FTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKH-IAERPNIGEYRGIGFMW 393
Query: 403 GIEF---DVSATP----------VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQA 449
+E S TP + + C D GL+ G+ V L PP I++E ++D+
Sbjct: 394 ALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLGQS--VVLCPPFILTEAQMDEM 451
Query: 450 VEILCKTL 457
+ L K L
Sbjct: 452 FDKLEKAL 459
>pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1MGV|B Chain B, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 138 bits (348), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 130/402 (32%), Positives = 197/402 (49%), Gaps = 51/402 (12%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
PVV S +GC+L ++GR +D S G+ A+ Q + ++HV M+ I
Sbjct: 28 PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHV--MFGGI 83
Query: 141 ---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
P IEL ++LVA + + VF +++G+ A E A+K A ++ + E F++
Sbjct: 84 THAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG----EARQRFLT 139
Query: 196 FTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNF-----------------VEYGNIEA 237
F N +HG T GA+++ ++ S ++ +P F V + + A
Sbjct: 140 FRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA 199
Query: 238 TRKLIQPGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296
+ + AAV +EPI QG GG+ E+L+ +R CD G LL+ DE+ G GRTG
Sbjct: 200 AHR----HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTG 255
Query: 297 YLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSPL 350
L+A EH I PDI+ L K L GG + + A L T +VA I+ G+ HG TF G+PL
Sbjct: 256 KLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315
Query: 351 VCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPH-VKDVRGLGLIIGIEFDVS 409
C AA A L + + + V+ +E L AR+ V DVR LG I +E +
Sbjct: 316 ACAAANASLAILESGDWQQQVADIEVQLREQLAP--ARDAEMVADVRVLGAIGVVE---T 370
Query: 410 ATPVVDACRDSGLL---VLTAGKGNVVRLVPPLIISEQELDQ 448
PV A + V A G ++ L+PP II Q+L +
Sbjct: 371 THPVNMAALQKFFVEQGVWIAPFGKLIYLMPPYIILPQQLQR 412
>pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|B Chain B, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|C Chain C, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|D Chain D, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
Length = 465
Score = 138 bits (348), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 117/428 (27%), Positives = 186/428 (43%), Gaps = 55/428 (12%)
Query: 77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM 136
+ R VV+ G+G + D GR YLD +SG+ G I+A Q +
Sbjct: 38 HQRGTVVVTHGEGPYIVDVHGRRYLDANSGLWNMVAGFDHKGLIEAAKAQYDRFPGYHAF 97
Query: 137 Y--YSIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQR-HSNPDSKEPAT 191
+ S + L+++LV S D RVF++N+G+EAN+ +K P ++ T
Sbjct: 98 FGRMSDQTVMLSEKLVEVSPFDNGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILT 157
Query: 192 EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGV------NFVEYGN----------- 234
+ N++HG T + ++T K Y S F +PG ++ YG
Sbjct: 158 RW----NAYHGVTAVSASMTGKP-YNSVFGLPLPGFIHLTCPHYWRYGEEGETEAQFVAR 212
Query: 235 ----IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC 290
+E T A F EP+ G GG+ K + Q + ++ DEV C
Sbjct: 213 LARELEDTITREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPMISDEVIC 272
Query: 291 GLGRTGYLWAHEHYGIFPD-IMTLAKPLAGGLPIGAALV-------TEKVASAINYGDHG 342
G GRTG W Y PD I++ AG P+GA ++ E AI HG
Sbjct: 273 GFGRTGNTWGCLTYDFMPDAIISSXNLTAGFFPMGAVILGPDLAKRVEAAVEAIEEFPHG 332
Query: 343 STFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLII 402
T +G P+ C A+ +D + N +V + F+ LK ++A P++ + RG+G +
Sbjct: 333 FTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEAGLK-RIADRPNIGEYRGIGFMW 391
Query: 403 GIE----------FDVS---ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQA 449
+E FD + + + + C D GL+ G+ V L PP I++E ++D+
Sbjct: 392 ALEAVKDKPTKTPFDANLSVSERIANTCTDLGLICRPLGQSIV--LCPPFILTEAQMDEM 449
Query: 450 VEILCKTL 457
E L K L
Sbjct: 450 FEKLEKAL 457
>pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|B Chain B, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|C Chain C, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|D Chain D, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 118/428 (27%), Positives = 184/428 (42%), Gaps = 55/428 (12%)
Query: 77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT--HVS 134
+ R VV+ G+G + D GR YLD +SG+ G I A Q H +
Sbjct: 46 HQRGTVVVTHGEGPYIVDVNGRRYLDANSGLFNMVAGFDHKGLIDAAKAQYERFPGYHAA 105
Query: 135 NMYYSIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQR-HSNPDSKEPAT 191
S + L+++LV S D RVF++N+G+EAN+ +K P ++ T
Sbjct: 106 FGKMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILT 165
Query: 192 EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGV------NFVEYGN----------- 234
+ N++HG T + ++T Y S F +PG ++ YG
Sbjct: 166 RW----NAYHGATAVSASMTGFP-YNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVAR 220
Query: 235 ----IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC 290
+E T + A F EP+ G GG+ K + Q + ++ DEV C
Sbjct: 221 LARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVVC 280
Query: 291 GLGRTGYLWAHEHYGIFPD-IMTLAKPLAGGLPIGAALV-------TEKVASAINYGDHG 342
G GRTG W Y PD I++ AG P+GA ++ E AI HG
Sbjct: 281 GFGRTGNTWGCVTYDFTPDAIISSXNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHG 340
Query: 343 STFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLII 402
T +G P+ C A+ +D + N +V + F+E LK +A P++ + RG+G +
Sbjct: 341 FTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKH-IAERPNIGEYRGIGFMW 399
Query: 403 GIEF---DVSATP----------VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQA 449
+E S TP + + C D GL+ G+ V L PP I++E ++D+
Sbjct: 400 ALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICFPLGQS--VVLCPPFILTEAQMDEM 457
Query: 450 VEILCKTL 457
+ L K L
Sbjct: 458 FDKLEKAL 465
>pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ3|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ5|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1QJ5|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1MLY|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLY|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLZ|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin.
pdb|1MLZ|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin
Length = 429
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 128/401 (31%), Positives = 198/401 (49%), Gaps = 49/401 (12%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
PVV S +GC+L ++GR +D S G+ A+ Q + ++HV M+ I
Sbjct: 28 PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHV--MFGGI 83
Query: 141 ---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
P IEL ++LVA + + VF +++G+ A E A+K A ++ + E F++
Sbjct: 84 THAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG----EARQRFLT 139
Query: 196 FTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNF-----------------VEYGNIEA 237
F N +HG T GA+++ ++ S ++ +P F V + + A
Sbjct: 140 FRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA 199
Query: 238 TRKLIQPGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296
+ + AAV +EPI QG GG+ E+L+ +R CD G LL+ DE+ G GRTG
Sbjct: 200 AHR----HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTG 255
Query: 297 YLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSPL 350
L+A EH I PDI+ L K L GG + + A L T +VA I+ G+ HG TF G+PL
Sbjct: 256 KLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315
Query: 351 VCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPH-VKDVRGLGLIIGIE--FD 407
C AA A L + + + V+ +E L AR+ V DVR LG I +E
Sbjct: 316 ACAAANASLAILESGDWQQQVADIEVQLREQLAP--ARDAEMVADVRVLGAIGVVETTHP 373
Query: 408 VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQ 448
V+ + + G+ + GK ++ L+PP II Q+L +
Sbjct: 374 VNMAALQKFFVEQGVWIRPFGK--LIYLMPPYIILPQQLQR 412
>pdb|1DTY|A Chain A, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor.
pdb|1DTY|B Chain B, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor
Length = 429
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 130/402 (32%), Positives = 200/402 (49%), Gaps = 51/402 (12%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
PVV S +GC+L ++GR +D S G+ A+ Q + ++HV M+ I
Sbjct: 28 PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHV--MFGEI 83
Query: 141 ---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSK-EPATEFV 194
P IEL ++LVA + + VF +++G+ A E A+K A ++ D+K E F+
Sbjct: 84 THAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYW-----DAKGEARDRFL 138
Query: 195 SFTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNF-----------------VEYGNIE 236
+F N +HG T GA+++ ++ S ++ +P F V + +
Sbjct: 139 TFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLM 198
Query: 237 ATRKLIQPGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT 295
A + + AAV +EPI QG GG+ E+L+ +R CD G LL+ DE+ G GRT
Sbjct: 199 AAHR----HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRT 254
Query: 296 GYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSP 349
G L+A EH I PDI+ L K L GG + + A L T +VA I+ G+ HG TF G+P
Sbjct: 255 GKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISDGEAGCFMHGPTFMGNP 314
Query: 350 LVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPH-VKDVRGLGLIIGIE--F 406
L C AA A L + + + V+ +E L AR+ V DVR LG I +E
Sbjct: 315 LACAAANASLAILESGDWQQQVADIEVQLREQLAP--ARDAEMVADVRVLGAIGVVETTH 372
Query: 407 DVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQ 448
V+ + + G+ + GK ++ L+PP II Q+L +
Sbjct: 373 PVNMAALQKFFVEQGVWIRPFGK--LIYLMPPYIILPQQLQR 412
>pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S09|B Chain B, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 128/401 (31%), Positives = 197/401 (49%), Gaps = 49/401 (12%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
PVV S +GC+L ++GR +D S G+ A+ Q + ++HV M+ I
Sbjct: 28 PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHV--MFGGI 83
Query: 141 ---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
P IEL ++LVA + + VF +++G+ A E A+K A ++ + E F++
Sbjct: 84 THAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG----EARQRFLT 139
Query: 196 FTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNF-----------------VEYGNIEA 237
F N FHG T GA+++ ++ S ++ +P F V + + A
Sbjct: 140 FRNGFHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA 199
Query: 238 TRKLIQPGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296
+ + AAV +EPI QG GG+ E+L+ +R CD G LL+ DE+ G GRTG
Sbjct: 200 AHR----HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTG 255
Query: 297 YLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSPL 350
L+A EH I PDI+ L L GG + + A L T +VA I+ G+ HG TF G+PL
Sbjct: 256 KLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315
Query: 351 VCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPH-VKDVRGLGLIIGIE--FD 407
C AA A L + + + V+ +E L AR+ V DVR LG I +E
Sbjct: 316 ACAAANASLAILESGDWQQQVADIEVQLREQLAP--ARDAEMVADVRVLGAIGVVETTHP 373
Query: 408 VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQ 448
V+ + + G+ + GK ++ L+PP II Q+L +
Sbjct: 374 VNMAALQKFFVEQGVWIRPFGK--LIYLMPPYIILPQQLQR 412
>pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S08|B Chain B, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 135 bits (340), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 127/401 (31%), Positives = 197/401 (49%), Gaps = 49/401 (12%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
PVV S +GC+L ++GR +D S G+ A+ Q + ++HV M+ I
Sbjct: 28 PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHV--MFGGI 83
Query: 141 ---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
P IEL ++LVA + + VF +++G+ A E A+K A ++ + E F++
Sbjct: 84 THAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG----EARQRFLT 139
Query: 196 FTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNF-----------------VEYGNIEA 237
F N +HG T GA+++ ++ S ++ +P F V + + A
Sbjct: 140 FRNGYHGNTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA 199
Query: 238 TRKLIQPGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296
+ + AAV +EPI QG GG+ E+L+ +R CD G LL+ DE+ G GRTG
Sbjct: 200 AHR----HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTG 255
Query: 297 YLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSPL 350
L+A EH I PDI+ L L GG + + A L T +VA I+ G+ HG TF G+PL
Sbjct: 256 KLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315
Query: 351 VCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPH-VKDVRGLGLIIGIE--FD 407
C AA A L + + + V+ +E L AR+ V DVR LG I +E
Sbjct: 316 ACAAANASLAILESGDWQQQVADIEVQLREQLAP--ARDAEMVADVRVLGAIGVVETTHP 373
Query: 408 VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQ 448
V+ + + G+ + GK ++ L+PP II Q+L +
Sbjct: 374 VNMAALQKFFVEQGVWIRPFGK--LIYLMPPYIILPQQLQR 412
>pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|B Chain B, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|C Chain C, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|D Chain D, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 135 bits (339), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 120/428 (28%), Positives = 181/428 (42%), Gaps = 55/428 (12%)
Query: 77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT--HVS 134
+ R VV+ G+G + D GR YLD +SG+ G I A Q H
Sbjct: 46 HQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNXVAGFDHKGLIDAAKAQYERFPGYHAF 105
Query: 135 NMYYSIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQR-HSNPDSKEPAT 191
S + L+++LV S D RVF++N+G+EAN+ +K P ++ T
Sbjct: 106 FGRXSDQTVXLSEKLVEVSPFDSGRVFYTNSGSEANDTXVKXLWFLHAAEGKPQKRKILT 165
Query: 192 EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGV------NFVEYGN----------- 234
+ N++HG T + + T K Y S F +PG ++ YG
Sbjct: 166 RW----NAYHGVTAVSASXTGKP-YNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVAR 220
Query: 235 ----IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC 290
+E T + A F EP+ G GG+ K + Q + ++ DEV C
Sbjct: 221 LARELEETIQREGADTIAGFFAEPVXGAGGVIPPAKGYFQAILPILRKYDIPVISDEVIC 280
Query: 291 GLGRTGYLWAHEHYGIFPDIMTLAKPL-AGGLPIGAALV-------TEKVASAINYGDHG 342
G GRTG W Y PD + +K L AG P GA ++ E AI HG
Sbjct: 281 GFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPXGAVILGPELSKRLETAIEAIEEFPHG 340
Query: 343 STFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLII 402
T +G P+ C A+ +D + N +V + F+E LK +A P++ + RG+G
Sbjct: 341 FTASGHPVGCAIALKAIDVVXNEGLAENVRRLAPRFEERLKH-IAERPNIGEYRGIGFXW 399
Query: 403 GIEF---DVSATP----------VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQA 449
+E S TP + + C D GL+ G+ V L PP I++E + D+
Sbjct: 400 ALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLGQS--VVLCPPFILTEAQXDEX 457
Query: 450 VEILCKTL 457
+ L K L
Sbjct: 458 FDKLEKAL 465
>pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S0A|B Chain B, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 134 bits (338), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 127/401 (31%), Positives = 197/401 (49%), Gaps = 49/401 (12%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
PVV S +GC+L ++GR +D S G+ A+ Q + ++HV M+ I
Sbjct: 28 PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHV--MFGGI 83
Query: 141 ---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
P IEL ++LVA + + VF +++G+ A E A+K A ++ + E F++
Sbjct: 84 THAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG----EARQRFLT 139
Query: 196 FTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNF-----------------VEYGNIEA 237
F N +HG T GA+++ ++ S ++ +P F V + + A
Sbjct: 140 FRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA 199
Query: 238 TRKLIQPGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296
+ + AAV +EPI QG GG+ E+L+ +R CD G LL+ DE+ G GRTG
Sbjct: 200 AHR----HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTG 255
Query: 297 YLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSPL 350
L+A EH I PDI+ L L GG + + A L T +VA I+ G+ HG TF G+PL
Sbjct: 256 KLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315
Query: 351 VCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPH-VKDVRGLGLIIGIE--FD 407
C AA A L + + + V+ +E L AR+ V DVR LG I +E
Sbjct: 316 ACAAANASLAILESGDWQQQVADIEVQLREQLAP--ARDAEMVADVRVLGAIGVVETTHP 373
Query: 408 VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQ 448
V+ + + G+ + GK ++ L+PP II Q+L +
Sbjct: 374 VNMAALQKFFVEQGVWIRPFGK--LIYLMPPYIILPQQLQR 412
>pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1S07|B Chain B, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 127/401 (31%), Positives = 197/401 (49%), Gaps = 49/401 (12%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
PVV S +GC+L ++GR +D S G+ A+ Q + ++HV M+ I
Sbjct: 28 PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHV--MFGGI 83
Query: 141 ---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
P IEL ++LVA + + VF +++G+ A E A+K A ++ + E F++
Sbjct: 84 THAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG----EARQRFLT 139
Query: 196 FTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNF-----------------VEYGNIEA 237
F N +HG T GA+++ ++ S ++ +P F V + + A
Sbjct: 140 FRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA 199
Query: 238 TRKLIQPGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296
+ + AAV +EPI QG GG+ E+L+ +R CD G LL+ DE+ G G TG
Sbjct: 200 AHR----HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGATG 255
Query: 297 YLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSPL 350
L+A EH I PDI+ L K L GG + + A L T +VA I+ G+ HG TF G+PL
Sbjct: 256 KLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315
Query: 351 VCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPH-VKDVRGLGLIIGIE--FD 407
C AA A L + + + V+ +E L AR+ V DVR LG I +E
Sbjct: 316 ACAAANASLAILESGDWQQQVADIEVQLREQLAP--ARDAEMVADVRVLGAIGVVETTHP 373
Query: 408 VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQ 448
V+ + + G+ + GK ++ L+PP II Q+L +
Sbjct: 374 VNMAALQKFFVEQGVWIRPFGK--LIYLMPPYIILPQQLQR 412
>pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S06|B Chain B, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 126/401 (31%), Positives = 197/401 (49%), Gaps = 49/401 (12%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
PVV S +GC+L ++GR +D S G+ A+ Q + ++HV M+ I
Sbjct: 28 PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHV--MFGGI 83
Query: 141 ---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
P IEL ++LVA + + VF +++G+ A E A+K A ++ + E F++
Sbjct: 84 THAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG----EARQRFLT 139
Query: 196 FTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNF-----------------VEYGNIEA 237
F N +HG T GA+++ ++ S ++ +P F V + + A
Sbjct: 140 FRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA 199
Query: 238 TRKLIQPGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296
+ + AAV +EPI QG GG+ E+L+ +R CD G LL+ DE+ G G+TG
Sbjct: 200 AHR----HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGKTG 255
Query: 297 YLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSPL 350
L+A EH I PDI+ L L GG + + A L T +VA I+ G+ HG TF G+PL
Sbjct: 256 KLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315
Query: 351 VCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPH-VKDVRGLGLIIGIE--FD 407
C AA A L + + + V+ +E L AR+ V DVR LG I +E
Sbjct: 316 ACAAANASLAILESGDWQQQVADIEVQLREQLAP--ARDAEMVADVRVLGAIGVVETTHP 373
Query: 408 VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQ 448
V+ + + G+ + GK ++ L+PP II Q+L +
Sbjct: 374 VNMAALQKFFVEQGVWIRPFGK--LIYLMPPYIILPQQLQR 412
>pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|B Chain B, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|C Chain C, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|D Chain D, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
Length = 430
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 122/410 (29%), Positives = 187/410 (45%), Gaps = 53/410 (12%)
Query: 83 VLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQ 142
V G+G LYD GR YLD SSG V +GHG A+ + + QA L V +S
Sbjct: 14 VAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQFSSDV 73
Query: 143 IE-----LAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT-EFVSF 196
+E LA+ + +F R + + G+EA E+A+K AR++ + + EP + ++
Sbjct: 74 LEEYAGRLARFVGLPTF--RFWAVSGGSEATESAVKLARQY----HVERGEPGRFKVITR 127
Query: 197 TNSFHGRTMGALALTSKEHYRSPFEPVM------------PGVNFVEYGNIEATRKLIQ- 243
S+HG ++G+LA + R + P+M P N E + E R L++
Sbjct: 128 VPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAE--DAEGLRALLER 185
Query: 244 --PGKTAAVFVEPIQGEG-GIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300
P AA EP+ G + + + +RD CD+AG + + DEV G+GR G A
Sbjct: 186 EGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLA 245
Query: 301 HEHY-GIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINYGD----HGSTFAGSPLVCNA 354
+ G+ PDI L K LA G P+ L +V + G HG T+AG P+ A
Sbjct: 246 LSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAA 305
Query: 355 AIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLG---------LIIGIE 405
++VLD + + ++G L+ AR P + VRG G L G
Sbjct: 306 GLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLGDLATGQA 365
Query: 406 FDVS--ATPVVDACRDSGLLVLTA------GKGNVVRLVPPLIISEQELD 447
F+ A+ + A GL+ G+G+ + L PPL I+ E+D
Sbjct: 366 FETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVD 415
>pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFT|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
Length = 457
Score = 131 bits (329), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 122/382 (31%), Positives = 170/382 (44%), Gaps = 38/382 (9%)
Query: 94 DAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI---PQIELAKRLV 150
D + E LD S GHG +A+ Q V+ HV M+ + P LAK LV
Sbjct: 71 DGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHV--MFGGLTHEPAARLAKLLV 128
Query: 151 ACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL 208
+ A D VFFS++G+ + E A K A ++ R K +++ +HG T A+
Sbjct: 129 DITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKR---RLMTWRGGYHGDTFLAM 185
Query: 209 A----------LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPI-QG 257
+ L + F P +P Y + G+ AAV VEP+ QG
Sbjct: 186 SICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQG 245
Query: 258 EGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPL 317
GG+ +L LRD C LL+FDE+ G GRTG L+A +H G+ PDIM + K L
Sbjct: 246 AGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKAL 305
Query: 318 AGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSPLVCNAAIAVLDKISNPAFLASV 371
GG L + A L T VA I+ G HG TF +PL C ++A ++ + + +
Sbjct: 306 TGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRI 365
Query: 372 SKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD-----VSATPVVDACRDSGLLVLT 426
++ L A P V DVR G I IE D ATP A D G V
Sbjct: 366 TELAAGLTAGLDTARAL-PAVTDVRVCGAIGVIECDRPVDLAVATP---AALDRG--VWL 419
Query: 427 AGKGNVVRLVPPLIISEQELDQ 448
N+V +PP I + E+ Q
Sbjct: 420 RPFRNLVYAMPPYICTPAEITQ 441
>pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
pdb|3LV2|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
Length = 462
Score = 128 bits (321), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 170/382 (44%), Gaps = 38/382 (9%)
Query: 94 DAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI---PQIELAKRLV 150
D + E LD S GHG +A+ Q V+ HV M+ + P LAK LV
Sbjct: 76 DGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHV--MFGGLTHEPAARLAKLLV 133
Query: 151 ACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL 208
+ A D VFFS++G+ + E A K A ++ R K +++ +HG T A+
Sbjct: 134 DITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKR---RLMTWRGGYHGDTFLAM 190
Query: 209 A----------LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPI-QG 257
+ L + F P +P Y + G+ AAV VEP+ QG
Sbjct: 191 SICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQG 250
Query: 258 EGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPL 317
GG+ +L LRD C LL+FDE+ G GRTG L+A +H G+ PDIM + K L
Sbjct: 251 AGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKAL 310
Query: 318 AGG-LPIGAALVTEKVASAINYGDHGS-----TFAGSPLVCNAAIAVLDKISNPAFLASV 371
GG L + A L T VA I+ G G+ TF +PL C ++A ++ + + +
Sbjct: 311 TGGYLSLAATLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVASVELLLGQDWRTRI 370
Query: 372 SKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD-----VSATPVVDACRDSGLLVLT 426
++ L A P V DVR G I IE D ATP A D G V
Sbjct: 371 TELAAGLTAGLDTARAL-PAVTDVRVCGAIGVIECDRPVDLAVATP---AALDRG--VWL 424
Query: 427 AGKGNVVRLVPPLIISEQELDQ 448
N+V +PP I + E+ Q
Sbjct: 425 RPFRNLVYAMPPYICTPAEITQ 446
>pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
pdb|3BV0|B Chain B, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
Length = 437
Score = 128 bits (321), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 170/382 (44%), Gaps = 38/382 (9%)
Query: 94 DAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI---PQIELAKRLV 150
D + E LD S GHG +A+ Q V+ HV M+ + P LAK LV
Sbjct: 51 DGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHV--MFGGLTHEPAARLAKLLV 108
Query: 151 ACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL 208
+ A D VFFS++G+ + E A K A ++ R K +++ +HG T A+
Sbjct: 109 DITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKR---RLMTWRGGYHGDTFLAM 165
Query: 209 A----------LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPI-QG 257
+ L + F P +P Y + G+ AAV VEP+ QG
Sbjct: 166 SICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQG 225
Query: 258 EGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPL 317
GG+ +L LRD C LL+FDE+ G GRTG L+A +H G+ PDIM + K L
Sbjct: 226 AGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKAL 285
Query: 318 AGG-LPIGAALVTEKVASAINYGDHGS-----TFAGSPLVCNAAIAVLDKISNPAFLASV 371
GG L + A L T VA I+ G G+ TF +PL C ++A ++ + + +
Sbjct: 286 TGGYLSLAATLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVASVELLLGQDWRTRI 345
Query: 372 SKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFD-----VSATPVVDACRDSGLLVLT 426
++ L A P V DVR G I IE D ATP A D G V
Sbjct: 346 TELAAGLTAGLDTARAL-PAVTDVRVCGAIGVIECDRPVDLAVATP---AALDRG--VWL 399
Query: 427 AGKGNVVRLVPPLIISEQELDQ 448
N+V +PP I + E+ Q
Sbjct: 400 RPFRNLVYAMPPYICTPAEITQ 421
>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
pdb|3I5T|B Chain B, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
Length = 476
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 110/450 (24%), Positives = 198/450 (44%), Gaps = 51/450 (11%)
Query: 48 NDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGI 107
NDA +AG +G ++ + + + A VL +G ++ +GR +D +G+
Sbjct: 5 NDATN-AAGAVGAAMRDHILLPAQEMAKLGKSAQPVLTHAEGIYVHTEDGRRLIDGPAGM 63
Query: 108 AVNALGHGDADWIKAVVDQANVLTHVSNMYYSI-PQIELAKRLVACSFAD--RVFFSNTG 164
+G+G + + A+ QA VL + S Y + P LA+++ + D R+FF+ G
Sbjct: 64 WCAQVGYGRREIVDAMAHQAMVLPYASPWYMATSPAARLAEKIATLTPGDLNRIFFTTGG 123
Query: 165 TEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM 224
+ A ++A++F+ + ++N + + + +HG T A T + F+
Sbjct: 124 STAVDSALRFS---EFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQ 180
Query: 225 PGVNFVEYGN-------------------IEATRKLIQPGKTAAVFVEPIQGEGGIYSAT 265
++F+ N E + + P AA EPI GG+
Sbjct: 181 DRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPP 240
Query: 266 KEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEH-YGIFPDIMTLAKPLAGG-LPI 323
+ + C+ L + DEV G GR G +A E +G+ PDI+T AK + G +P+
Sbjct: 241 AGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYVPL 300
Query: 324 GAALVTEKVASAI-------NYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGH 376
G ++E V + I ++ +G T++ P+ C AA+A ++ + + +
Sbjct: 301 GGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVDQAREMAD 360
Query: 377 YFKETLKQKLARNPHVKDVRGLGLI------------IGIEFDVSATPVVDA-CRDSGLL 423
YF L L P V + R +GL+ G D + T +D C + GL+
Sbjct: 361 YFAAALA-SLRDLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLI 419
Query: 424 VLTAGKGNVVRLVPPLIISEQELDQAVEIL 453
V G++ + PPLIIS ++D+ V I+
Sbjct: 420 VRPL--GDLCVISPPLIISRAQIDEMVAIM 447
>pdb|3FCR|A Chain A, Crystal Structure Of Putative Aminotransferase
(Yp_614685.1) From Silicibacter Sp. Tm1040 At 1.80 A
Resolution
Length = 459
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 107/417 (25%), Positives = 187/417 (44%), Gaps = 51/417 (12%)
Query: 83 VLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM--YYSI 140
V+ + G + D +G + LD +G+ +G+G + +A+ DQA L + + + +
Sbjct: 35 VIKTASGVFIEDRDGTKLLDAFAGLYCVNVGYGRQEIAEAIADQARELAYYHSYVGHGTE 94
Query: 141 PQIELAKRLV--ACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN 198
I LAK ++ A +V+F G++ANE +K ++N + + +S
Sbjct: 95 ASITLAKXILDRAPKNXSKVYFGLGGSDANETNVKL---IWYYNNILGRPEKKKIISRWR 151
Query: 199 SFHGRTMGALALTSKEHYRSPFE-PVMPGVN------------------FVEYGNIEATR 239
+HG + +LT E + F+ PV ++ FV + E
Sbjct: 152 GYHGSGLVTGSLTGLELFHKKFDLPVEQVIHTEAPYYFRREDLNQTEEQFVAHCVAELEA 211
Query: 240 KLIQPG-KTAAVFV-EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY 297
+ + G T A F+ EPI G GGI + + ++ + LLV DEV G GR G
Sbjct: 212 LIEREGADTIAAFIGEPILGTGGIVPPPAGYWEAIQTVLNKHDILLVADEVVTGFGRLGT 271
Query: 298 LWAHEHYGIFPDIMTLA-KPLAGGL-PIGAALVTEKVASAINYGD-------HGSTFAGS 348
+ +HYG+ PDI+T+A K L P+ ++V++KV + G HG T++
Sbjct: 272 XFGSDHYGLEPDIITIAXKGLTSAYAPLSGSIVSDKVWKVLEQGTDENGPIGHGWTYSAH 331
Query: 349 PLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF-- 406
P+ A +A L + +++ + G Y T + L+++ +V DVRG GL+ +EF
Sbjct: 332 PIGAAAGVANLKLLDELNLVSNAGEVGAYLNATXAEALSQHANVGDVRGEGLLCAVEFVK 391
Query: 407 DVSATPVVDACRDSG------------LLVLTAGKGNVVRLVPPLIISEQELDQAVE 451
D + DA G ++ +G+++ PP ++ E DQ VE
Sbjct: 392 DRDSRTFFDAADKIGPQISAKLLEQDKIIARAXPQGDILGFAPPFCLTRAEADQVVE 448
>pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate
Aminotransferase
Length = 449
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 106/420 (25%), Positives = 191/420 (45%), Gaps = 47/420 (11%)
Query: 79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYY 138
R P ++ + +G L D +GR+ D SG+ GH + +AV Q + L + Y
Sbjct: 31 RDPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQY 90
Query: 139 SIP-QIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
P +LA+++ + + VFF+++G+E A+K R + R +K T+ +
Sbjct: 91 GHPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATK---TKMIG 147
Query: 196 FTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY---------------GNIEATRK 240
+HG + +L R F M V+ + + G I +
Sbjct: 148 RARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADE 207
Query: 241 LIQ------PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR 294
L++ AAVFVEP+ G G+ + +L+ R+ C+ LLVFDEV G GR
Sbjct: 208 LLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGR 267
Query: 295 TGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAALVTEKVAS----------AINYGDHGS 343
TG ++ + +G+ PD+M +AK + G +P+GA + + ++ A+ + HG
Sbjct: 268 TGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEF-PHGY 326
Query: 344 TFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQ-KLARNPHVKDVRGLGLII 402
T++ P+ C A +A L + + SV++ +F++ L K A+N V D+R GL
Sbjct: 327 TYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKGAKN--VIDIRNFGLAG 384
Query: 403 GIEFDVSATPVVDACRDSGLLVLTAG-----KGNVVRLVPPLIISEQELDQAVEILCKTL 457
I+ + ++G+ + AG G+ ++ P Q+LD+ + + + L
Sbjct: 385 AIQIAPRDGDAIVRPFEAGMALWKAGFYVRFGGDTLQFGPTFNSKPQDLDRLFDAVGEVL 444
>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form
pdb|2CJG|A Chain A, Lysine Aminotransferase From M. Tuberculosis In Bound Pmp
Form
pdb|2CJH|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form With Bound Substrate 2-
Ketoglutarate
pdb|2JJG|A Chain A, Crystal Structure Of The M. Tuberculosis Lysine-Epsilon
Aminotransferase (Rv3290c) Complexed To An Inhibitor
pdb|2CJD|A Chain A, Lysine Aminotransferase From M. Tuberculosis In External
Aldimine Form
Length = 449
Score = 118 bits (295), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 125/416 (30%), Positives = 185/416 (44%), Gaps = 45/416 (10%)
Query: 84 LASGKGCKLYDA-EGREYLDLSSGIAVNALGHG-----DADWIKAVVDQANVLTHVSNMY 137
L G L DA GR YLD+ + +A +ALG D A + QA + ++
Sbjct: 39 LTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDV 98
Query: 138 YSIPQ---IELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQ-RHSNPDSKEPA--T 191
YS+ +E R++ +FF G A E A+K A ++ RH+ +PA T
Sbjct: 99 YSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGT 158
Query: 192 EFVSFTNSFHGRTMGALALTSKE---HYRSP-FE------PVM-PGVN--FVEYGNIEAT 238
+ + +FHGR+ L+LT+ + R P F+ P M PG++ + EA
Sbjct: 159 QVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEAL 218
Query: 239 RKL-----IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293
R+ +P A EPIQGEGG EF +R+ CD+ ALL+FDEVQ G G
Sbjct: 219 RQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278
Query: 294 RTGYLWAHEHYGIFPDIMTLAKP------LAGGLPIGAALVTEKVASAINYGDHGSTFAG 347
TG WA++ + PDI+ K +AG A V S +N ST+ G
Sbjct: 279 LTGTAWAYQQLDVAPDIVAFGKKTQVCGVMAGRRVDEVADNVFAVPSRLN-----STWGG 333
Query: 348 SPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPH-VKDVRGLGLIIGIEF 406
+ A +L+ I + G Y + L + A P V D RG GL+
Sbjct: 334 NLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSL 393
Query: 407 DVSA--TPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460
+A ++ ++VL AG + VR PPL +S E+D A+ + LPV+
Sbjct: 394 PTTADRDELIRQLWQRAVIVLPAG-ADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448
>pdb|3GJU|A Chain A, Crystal Structure Of A Putative Aminotransferase (Mll7127)
From Mesorhizobium Loti Maff303099 At 1.55 A Resolution
Length = 459
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 106/415 (25%), Positives = 185/415 (44%), Gaps = 50/415 (12%)
Query: 83 VLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT--HVSNMYYSI 140
+ A G+G ++D GR+ +D +G+ +G+G A+ QA L H + +
Sbjct: 36 IXAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHGTE 95
Query: 141 PQIELAKRLV--ACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN 198
I LAK ++ A RV+F +G++ANE IK ++N + + +S
Sbjct: 96 ASITLAKXIIDRAPKGXSRVYFGLSGSDANETNIKL---IWYYNNVLGRPEKKKIISRWR 152
Query: 199 SFHGRTMGALALTSKEHYRSPFE-PVMPGVN------------------FVEYGNIEATR 239
+HG + +LT + + + F+ P P ++ F ++ +
Sbjct: 153 GYHGSGVXTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSXSEEQFSQHCADKLEE 212
Query: 240 KLIQPG-KTAAVFV-EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY 297
++ G +T A F+ EPI G GGI + + ++ LLV DEV G GR G
Sbjct: 213 XILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGT 272
Query: 298 LWAHEHYGIFPDIMTLA-KPLAGGL-PIGAALVTEKVASAINYGD-------HGSTFAGS 348
+ +HYGI PD++T+A K L P+ +V ++V + G HG T++
Sbjct: 273 XFGSDHYGIKPDLITIAXKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAH 332
Query: 349 PLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEF-- 406
P+ A +A L+ I + + + G YF+ L + + + +V +VRG G + +EF
Sbjct: 333 PICVAAGVANLELIDEXDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGXLAAVEFVA 392
Query: 407 DVSATPVVDACRDSGLLVLTA-----------GKGNVVRLVPPLIISEQELDQAV 450
D DA + G V TA +G+++ PPL ++ ++ D V
Sbjct: 393 DKDDRVFFDASQKIGPQVATALAASGVIGRAXPQGDILGFAPPLCLTREQADIVV 447
>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M.
Tuberculosis
Length = 449
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 124/416 (29%), Positives = 185/416 (44%), Gaps = 45/416 (10%)
Query: 84 LASGKGCKLYDA-EGREYLDLSSGIAVNALGHG-----DADWIKAVVDQANVLTHVSNMY 137
L G L DA GR YLD+ + +A +ALG D A + QA + ++
Sbjct: 39 LTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDV 98
Query: 138 YSIPQ---IELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQ-RHSNPDSKEPA--T 191
YS+ +E R++ +FF G A E A+K A ++ RH+ +PA T
Sbjct: 99 YSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGT 158
Query: 192 EFVSFTNSFHGRTMGALALTSKE---HYRSP-FE------PVM-PGVN--FVEYGNIEAT 238
+ + +FHGR+ L+LT+ + R P F+ P M PG++ + EA
Sbjct: 159 QVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEAL 218
Query: 239 RKL-----IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293
R+ +P A EPIQGEGG EF +R+ CD+ ALL+FDEVQ G G
Sbjct: 219 RQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278
Query: 294 RTGYLWAHEHYGIFPDIMTLAKP------LAGGLPIGAALVTEKVASAINYGDHGSTFAG 347
TG WA++ + PDI+ K +AG A V S +N S++ G
Sbjct: 279 LTGTAWAYQQLDVAPDIVAFGKKTQVCGVMAGRRVDEVADNVFAVPSRLN-----SSWGG 333
Query: 348 SPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPH-VKDVRGLGLIIGIEF 406
+ A +L+ I + G Y + L + A P V D RG GL+
Sbjct: 334 NLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSL 393
Query: 407 DVSA--TPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460
+A ++ ++VL AG + VR PPL +S E+D A+ + LPV+
Sbjct: 394 PTTADRDELIRQLWQRAVIVLPAG-ADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448
>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 121/411 (29%), Positives = 181/411 (44%), Gaps = 35/411 (8%)
Query: 84 LASGKGCKLYDA-EGREYLDLSSGIAVNALGHG-----DADWIKAVVDQANVLTHVSNMY 137
L G L DA GR YLD+ + +A +ALG D A + QA + ++
Sbjct: 39 LTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDV 98
Query: 138 YSIPQ---IELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQ-RHSNPDSKEPA--T 191
YS+ +E R++ +FF G A E A+K A ++ RH+ +PA T
Sbjct: 99 YSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGT 158
Query: 192 EFVSFTNSFHGRTMGALALTSKE---HYRSP-FE------PVM-PGVN--FVEYGNIEAT 238
+ + +FHGR+ L+LT+ + R P F+ P M PG++ + EA
Sbjct: 159 QVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEAL 218
Query: 239 RKL-----IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293
R+ +P A EPIQGEGG EF +R+ CD+ ALL+FDEVQ G G
Sbjct: 219 RQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278
Query: 294 RTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDH-GSTFAGSPLVC 352
TG WA++ + PDI+ K + V E + ST+ G+
Sbjct: 279 LTGTAWAYQQLDVAPDIVAFGKKTQVCGVMAGRRVDEVADNVFAVPSRLASTWGGNLTDM 338
Query: 353 NAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVK-DVRGLGLIIGIEFDVSA- 410
A +L+ I + G Y + L + A P V D RG GL+ +A
Sbjct: 339 VRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLPTTAD 398
Query: 411 -TPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460
++ ++VL AG + VR PPL +S E+D A+ + LPV+
Sbjct: 399 RDELIRQLWQRAVIVLPAG-ADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448
>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 124/416 (29%), Positives = 184/416 (44%), Gaps = 45/416 (10%)
Query: 84 LASGKGCKLYDA-EGREYLDLSSGIAVNALGHG-----DADWIKAVVDQANVLTHVSNMY 137
L G L DA GR YLD+ + +A +ALG D A + QA + ++
Sbjct: 39 LTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDV 98
Query: 138 YSIPQ---IELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQ-RHSNPDSKEPA--T 191
YS+ +E R++ +FF G A E A+K A ++ RH+ +PA T
Sbjct: 99 YSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGT 158
Query: 192 EFVSFTNSFHGRTMGALALTSKE---HYRSP-FE------PVM-PGVN--FVEYGNIEAT 238
+ + +FHGR+ L+LT+ + R P F+ P M PG++ + EA
Sbjct: 159 QVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEAL 218
Query: 239 RKL-----IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293
R+ +P A EPIQG GG EF +R+ CD+ ALL+FDEVQ G G
Sbjct: 219 RQARAAFETRPHDIACFVAEPIQGAGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278
Query: 294 RTGYLWAHEHYGIFPDIMTLAKP------LAGGLPIGAALVTEKVASAINYGDHGSTFAG 347
TG WA++ + PDI+ K +AG A V S +N ST+ G
Sbjct: 279 LTGTAWAYQQLDVAPDIVAFGKKTQVCGVMAGRRVDEVADNVFAVPSRLN-----STWGG 333
Query: 348 SPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVK-DVRGLGLIIGIEF 406
+ A +L+ I + G Y + L + A P V D RG GL+
Sbjct: 334 NLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSL 393
Query: 407 DVSA--TPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 460
+A ++ ++VL AG + VR PPL +S E+D A+ + LPV+
Sbjct: 394 PTTADRDELIRQLWQRAVIVLPAG-ADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448
>pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde
Aminotransferase Complexed With
Pyridoxamine-5'-Phosphate From Bacillus Subtilis
Length = 438
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 106/400 (26%), Positives = 173/400 (43%), Gaps = 50/400 (12%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGD---ADWIKAVVDQANVL---THVS 134
P+ + GKG K++D +G EY+D LGH + + +K V + T V
Sbjct: 44 PIFMERGKGSKIFDIDGNEYIDYVLSWGPLILGHTNDRVVESLKKVAEYGTSFGAPTEVE 103
Query: 135 NMYYSIPQIELAKRLV-ACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEF 193
N ELAK ++ + V ++GTEA +A++ AR + + +
Sbjct: 104 N--------ELAKLVIDRVPSVEIVRMVSSGTEATMSALRLARGYTGRN---------KI 146
Query: 194 VSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVN--------FVEYGNIEATRKLIQP- 244
+ F +HG +L + + + P PGV V Y ++E+ + Q
Sbjct: 147 LKFEGCYHGHG-DSLLIKAGSGVATLGLPDSPGVPEGIAKNTITVPYNDLESVKLAFQQF 205
Query: 245 -GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEH 303
A V VEP+ G G+ + FLQ LRD + G+LL+FDEV G R Y A +
Sbjct: 206 GEDIAGVIVEPVAGNMGVVPPQEGFLQGLRDITEQYGSLLIFDEVMTGF-RVDYNCAQGY 264
Query: 304 YGIFPDIMTLAKPLAGGLPIGA----ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVL 359
+G+ PD+ L K + GGLP+GA A + E++A + G T +G+PL A + L
Sbjct: 265 FGVTPDLTCLGKVIGGGLPVGAYGGKAEIMEQIAPSGPIYQAG-TLSGNPLAMTAGLETL 323
Query: 360 DKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRD 419
+++ P + KKG +E + + + G +IG F + +
Sbjct: 324 KQLT-PDSYKNFIKKGDRLEEGISKAAEAHGIPHTFNRAGSMIGFFFTNEPVINYETAKA 382
Query: 420 SGLLVLTA---GKGNVVRLVPP-----LIISEQELDQAVE 451
S L + + G N +PP L +S D+ +E
Sbjct: 383 SDLKLFASYYKGMANEGVFLPPSQFEGLFLSTAHTDEDIE 422
>pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From
Thermosynechococcus Elongatus
Length = 411
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 134/301 (44%), Gaps = 29/301 (9%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
P+V KG ++D +G +Y+D +GH + I A+ A + S +
Sbjct: 19 PIVFDHVKGAHIWDVDGNQYIDYVGSWGPAIVGHAHPEVIDAL--HAALEKGTSFGAPCL 76
Query: 141 PQIELAKRLVAC-SFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNS 199
+ LA+ ++A + V F N+GTEA A ++ R + + + + F
Sbjct: 77 LENILAEMVIAAVPSVEMVRFVNSGTEACMAVLRLMRAYTQRE---------KVIKFEGC 127
Query: 200 FHGRTMGALALTSKEHYRSPFEPVMPGV--------NFVEYGNIEATRKLIQ--PGKTAA 249
+HG + + + P PGV Y ++EA +L + P A
Sbjct: 128 YHGHA-DMFLVKAGSGVATLGLPDSPGVPKATTAATLTAPYNDLEAVSRLFEQYPNDIAG 186
Query: 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPD 309
V +EP+ G G FL+ LR+ GALLVFDEV G R Y A E +G+ PD
Sbjct: 187 VILEPVVGNAGFIPPDAGFLEGLRELTKQYGALLVFDEVMTGF-RIAYGGAQEKFGVTPD 245
Query: 310 IMTLAKPLAGGLPIGA----ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNP 365
+ TL K + GGLP+GA A + + VA A G T +G+PL A I L+ +S P
Sbjct: 246 LTTLGKVIGGGLPVGAYGGRAEIMKMVAPAGPVYQAG-TLSGNPLAMTAGIKTLEILSRP 304
Query: 366 A 366
Sbjct: 305 G 305
>pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|B Chain B, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|C Chain C, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|D Chain D, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
Length = 429
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 100/374 (26%), Positives = 162/374 (43%), Gaps = 54/374 (14%)
Query: 81 PVVLASGKGCKLYDAEGREYLD--LSSGIAVNALGHGD---ADWIKAVVDQANVL---TH 132
P+ GKG K+YD +G EY+D LS G ++ GH + + +KAV ++ T
Sbjct: 36 PLFXERGKGSKVYDIDGNEYIDYVLSWGPLIH--GHANDRVVEALKAVAERGTSFGAPTE 93
Query: 133 VSN-----MYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSK 187
+ N + +P IE+ + + N+GTEA +A++ AR + +
Sbjct: 94 IENKLAKLVIERVPSIEIVRXV------------NSGTEATXSALRLARGYTGRN----- 136
Query: 188 EPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVN--------FVEYGNIEATR 239
+ + F +HG +L + + + P PGV V Y ++E+ +
Sbjct: 137 ----KILKFIGCYHGHG-DSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVK 191
Query: 240 KLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY 297
+ A V VEP+ G G+ FL+ LR+ + GALL+FDEV G R Y
Sbjct: 192 YAFEQFGDDIACVIVEPVAGNXGVVPPQPGFLEGLREVTEQNGALLIFDEVXTGF-RVAY 250
Query: 298 LWAHEHYGIFPDIMTLAKPLAGGLPIGA----ALVTEKVASAINYGDHGSTFAGSPLVCN 353
+YG+ PD+ L K + GGLP+GA A + +VA + G T +G+PL
Sbjct: 251 NCGQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEIXRQVAPSGPIYQAG-TLSGNPLAXA 309
Query: 354 AAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPV 413
A L +++ P +K + L++ ++ + G IGI F
Sbjct: 310 AGYETLVQLT-PESYVEFERKAEXLEAGLRKAAEKHGIPHHINRAGSXIGIFFTDEPVIN 368
Query: 414 VDACRDSGLLVLTA 427
DA + S L A
Sbjct: 369 YDAAKSSNLQFFAA 382
>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Thermus Thermophilus Hb8
Length = 424
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 107/360 (29%), Positives = 160/360 (44%), Gaps = 42/360 (11%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
P L G+G ++DA+G YLD LGH + V + T + +
Sbjct: 35 PPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRE-----TLERGLTFGA 89
Query: 141 P---QIELAKRLV-ACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196
P ++ LAK++ A F D V F N+GTEA +A++ AR + V F
Sbjct: 90 PSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYTGRPY---------IVKF 140
Query: 197 TNSFHGRT--------MGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP--GK 246
++HG GAL L P E +EY + E R++++ +
Sbjct: 141 RGNYHGHADGLLVEAGSGALTLGVPSSAGVP-EEYAKLTLVLEYNDPEGLREVLKRRGEE 199
Query: 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI 306
AA+ EP+ G G+ T++FL+ L +A G LL+ DEV G R + A E G+
Sbjct: 200 IAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAFGGATELLGL 257
Query: 307 FPDIMTLAKPLAGGLPIGAAL----VTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKI 362
PD++TL K L GGLP A + EKVA + T +G+PL A +A L+ +
Sbjct: 258 KPDLVTLGKILGGGLPAAAYAGRREIMEKVAP-LGPVYQAGTLSGNPLAMAAGLATLELL 316
Query: 363 -SNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVV---DACR 418
NP + A + G + LK+ L V +G +I + F + PVV DA R
Sbjct: 317 EENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFF--TEGPVVTFQDARR 374
>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|B Chain B, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|C Chain C, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|D Chain D, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHW|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHY|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
Length = 472
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 114/424 (26%), Positives = 167/424 (39%), Gaps = 62/424 (14%)
Query: 88 KGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI-PQIELA 146
+G L D +G LDL S I+ +G+ +K V NV T ++ I P
Sbjct: 53 RGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFV 112
Query: 147 KRL------VACSFADRVFFSNTGTEANEAAIK----FARKFQRHSNPDSKE-------- 188
++L VA ++ G+ +NE A K + R +R + SKE
Sbjct: 113 EKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMIN 172
Query: 189 -----PATEFVSFTNSFHGRTMGALALTSKE--------HYRSPFEPV----MPGVNFVE 231
P +SF +FHGRTMG LA T + + P P P FV+
Sbjct: 173 QAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVK 232
Query: 232 YGNIEATR----------KLIQPGKT-AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG 280
E R K + KT A + VEPIQ EGG A+ +F + LRD G
Sbjct: 233 ENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHG 292
Query: 281 ALLVFDEVQCGLGRTGYLWAHEHYGIF--PDIMTLAKPLAGGLPIGAALVTEKVASAINY 338
+ DEVQ G G TG WAHEH+G+ D+MT +K + G E+ Y
Sbjct: 293 CAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMM----TGGFFHKEEFRPNAPY 348
Query: 339 GDHGSTFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPH-VKDVRG 397
+T+ G P V++ I L++ + G L AR P + VRG
Sbjct: 349 RIF-NTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRG 407
Query: 398 LGLIIGIEFDVSATPV----VDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEIL 453
G FD + + R+ G+++ G + +R P L+ + + I
Sbjct: 408 RGTFCS--FDTPDESIRNKLISIARNKGVMLGGCGDKS-IRFRPTLVFRDHHAHLFLNIF 464
Query: 454 CKTL 457
L
Sbjct: 465 SDIL 468
>pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Yersinia Pestis Co92
Length = 429
Score = 98.6 bits (244), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 130/298 (43%), Gaps = 27/298 (9%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANV-LTHVSNMYYS 139
P+ + G L+D +G+ Y+D LGH +AV++ L+ +
Sbjct: 36 PLFIERADGAYLFDVDGKAYIDYVGSWGPXILGHNHPAIRQAVIEAVERGLSFGAPTEXE 95
Query: 140 IPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNS 199
+ +L LV D V N+GTEA +AI+ AR + + + F
Sbjct: 96 VKXAQLVTDLVPTX--DXVRXVNSGTEATXSAIRLARGYTGRD---------KIIKFEGC 144
Query: 200 FHGRTMGALALTSKEHYRSPFEPVMPGV--NFVE------YGNIEATRKLIQ--PGKTAA 249
+HG L + + + +P PGV +F + Y ++ + R+ + P + A
Sbjct: 145 YHGHA-DCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVAC 203
Query: 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPD 309
+ VEP+ G EFL LR CD+ GALL+ DEV G R A ++Y + PD
Sbjct: 204 IIVEPVAGNXNCIPPLPEFLPGLRALCDEFGALLIIDEVXTGF-RVALAGAQDYYHVIPD 262
Query: 310 IMTLAKPLAGGLPIGAALVTEKVASAINYGD---HGSTFAGSPLVCNAAIAVLDKISN 364
+ L K + GG P+GA +V +A+ T +G+P+ A A L +IS
Sbjct: 263 LTCLGKIIGGGXPVGAFGGRREVXNALAPTGPVYQAGTLSGNPIAXAAGFACLTEISQ 320
>pdb|4AO9|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AO9|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
Length = 454
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 95/363 (26%), Positives = 158/363 (43%), Gaps = 42/363 (11%)
Query: 62 NKEVMEAEKKLLVGTYNRA-------PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGH 114
++ EA+ + + G +R+ P+ +A G+G L+DA+G Y D + GH
Sbjct: 44 SQRQFEAQARYMPGANSRSVLFYAPFPLTIARGEGAALWDADGHRYADFIAEYTAGVYGH 103
Query: 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA--DRVFFSNTGTEANEAAI 172
+ AV++ +++ +++ + LA RL+ F +++ F+N+GTEAN A+
Sbjct: 104 SAPEIRDAVIEAMQGGINLTG--HNLLEGRLA-RLICERFPQIEQLRFTNSGTEANLMAL 160
Query: 173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY 232
A F + V F+ +HG +G A S PF+ ++ + Y
Sbjct: 161 TAALHFTGRR---------KIVVFSGGYHGGVLGFGARPSPT--TVPFDFLV-----LPY 204
Query: 233 GNIEATRKLIQPG--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC 290
+ + R I+ + A V VEP+QG G +FLQ LR++ GALLVFDEV
Sbjct: 205 NDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVM- 263
Query: 291 GLGRTGYLWAH---EHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD----HGS 343
T L H GI D+ TL K + GG+ GA V + + H
Sbjct: 264 ----TSRLAPHGLANKLGIRSDLTTLGKYIGGGMSFGAFGGRADVMALFDPRTGPLAHSG 319
Query: 344 TFAGSPLVCNAAIAVLDKISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIG 403
TF + + A A L K+ P +++++G + L A G+G ++
Sbjct: 320 TFNNNVMTMAAGYAGLTKLFTPEAAGALAERGEALRARLNALCANEGVAMQFTGIGSLMN 379
Query: 404 IEF 406
F
Sbjct: 380 AHF 382
>pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
pdb|3L44|B Chain B, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
Length = 434
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 91/359 (25%), Positives = 154/359 (42%), Gaps = 35/359 (9%)
Query: 80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS 139
AP+ GKG +D +G +Y+D + GH KA+ A + + Y
Sbjct: 37 APIAXERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTAAE-----NGVLYG 91
Query: 140 IP---QIELAKRLVACSFA-DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
P +++ AK L A D+V F N+GTEA I+ AR + T+
Sbjct: 92 TPTALEVKFAKXLKEAXPALDKVRFVNSGTEAVXTTIRVARAYTGR---------TKIXK 142
Query: 196 FTNSFHGRT--------MGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG-- 245
F +HG + G L + + P + + V V + N+E ++ +
Sbjct: 143 FAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVP-QSIAQEVITVPFNNVETLKEALDKWGH 201
Query: 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYG 305
+ AA+ VEPI G GI FL+ + + +AGAL+++DEV R Y A + G
Sbjct: 202 EVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFXYGGAQDLLG 260
Query: 306 IFPDIMTLAKPLAGGLPIGA----ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK 361
+ PD+ L + GGLPIGA + E+VA + T AG+P + IA L+
Sbjct: 261 VTPDLTALGXVIGGGLPIGAYGGKKEIXEQVAP-LGPAYQAGTXAGNPASXASGIACLEV 319
Query: 362 ISNPAFLASVSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDACRDS 420
+ + + G ++ + ++ A++ + L + + F + DA +D+
Sbjct: 320 LQQEGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDT 378
>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|2GSA|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|4GSA|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|4GSA|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|3GSB|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
pdb|3GSB|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
Length = 432
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 98/358 (27%), Positives = 147/358 (41%), Gaps = 74/358 (20%)
Query: 61 NNKEVMEAEKKLLVGTYN---RA-------PVVLASGKGCKLYDAEGREYLDLSSGIAVN 110
+ E+ A +KL+ G + RA P+V K +D +G Y+D
Sbjct: 10 KSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPA 69
Query: 111 ALGHGDADWIKAV-------------VDQANVLTHVSNMYYSIPQIELAKRLVACSFADR 157
GH + I+A+ NVL + N ++P IE+ +
Sbjct: 70 ICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVN--DAVPSIEMVR---------- 117
Query: 158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRT----------MGA 207
F N+GTEA A ++ R + + + F +HG +
Sbjct: 118 --FVNSGTEACMAVLRLMRAYTGRD---------KIIKFEGCYHGHADMFLVKAGSGVAT 166
Query: 208 LALTSKEHYRSPFEPVMPGVNFVE--YGNIEATRKLI--QPGKTAAVFVEPIQGEGGIYS 263
L L S SP P N + Y ++EA + L PG+ A V +EPI G G
Sbjct: 167 LGLPS-----SPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIV 221
Query: 264 ATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPI 323
FL+ LR+ + ALLVFDEV G R Y E +G+ PD+ TL K + GGLP+
Sbjct: 222 PDAGFLEGLREITLEHDALLVFDEVMTGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGLPV 280
Query: 324 GA----ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPA---FLASVSKK 374
GA + + VA A G T +G+PL A I L+ + P +L ++K+
Sbjct: 281 GAYGGKREIMQLVAPAGPMYQAG-TLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKR 337
>pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOY|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HOZ|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOZ|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP1|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP1|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP2|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP2|B Chain B, Inter-Subunit Signaling In Gsam
Length = 432
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 98/358 (27%), Positives = 147/358 (41%), Gaps = 74/358 (20%)
Query: 61 NNKEVMEAEKKLLVGTYN---RA-------PVVLASGKGCKLYDAEGREYLDLSSGIAVN 110
+ E+ A +KL+ G + RA P+V K +D +G Y+D
Sbjct: 10 KSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPA 69
Query: 111 ALGHGDADWIKAV-------------VDQANVLTHVSNMYYSIPQIELAKRLVACSFADR 157
GH + I+A+ NVL + N ++P IE+ +
Sbjct: 70 ICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVN--DAVPSIEMVR---------- 117
Query: 158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRT----------MGA 207
F N+GTEA A ++ R + + + F +HG +
Sbjct: 118 --FVNSGTEACMAVLRIMRAYTGRD---------KIIKFEGCYHGHADMFLVKAGSGVAT 166
Query: 208 LALTSKEHYRSPFEPVMPGVNFVE--YGNIEATRKLI--QPGKTAAVFVEPIQGEGGIYS 263
L L S SP P N + Y ++EA + L PG+ A V +EPI G G
Sbjct: 167 LGLPS-----SPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIV 221
Query: 264 ATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPI 323
FL+ LR+ + ALLVFDEV G R Y E +G+ PD+ TL K + GGLP+
Sbjct: 222 PDAGFLEGLREITLEHDALLVFDEVMTGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGLPV 280
Query: 324 GA----ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPA---FLASVSKK 374
GA + + VA A G T +G+PL A I L+ + P +L ++K+
Sbjct: 281 GAYGGKREIMQLVAPAGPMYQAG-TLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKR 337
>pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam
pdb|3FQ7|B Chain B, Gabaculine Complex Of Gsam
pdb|3USF|A Chain A, Crystal Structure Of Dava-4
pdb|3USF|B Chain B, Crystal Structure Of Dava-4
Length = 427
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 98/358 (27%), Positives = 147/358 (41%), Gaps = 74/358 (20%)
Query: 61 NNKEVMEAEKKLLVGTYN---RA-------PVVLASGKGCKLYDAEGREYLDLSSGIAVN 110
+ E+ A +KL+ G + RA P+V K +D +G Y+D
Sbjct: 5 KSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPA 64
Query: 111 ALGHGDADWIKAV-------------VDQANVLTHVSNMYYSIPQIELAKRLVACSFADR 157
GH + I+A+ NVL + N ++P IE+ +
Sbjct: 65 ICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVN--DAVPSIEMVR---------- 112
Query: 158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRT----------MGA 207
F N+GTEA A ++ R + + + F +HG +
Sbjct: 113 --FVNSGTEACMAVLRIMRAYTGRD---------KIIKFEGCYHGHADMFLVKAGSGVAT 161
Query: 208 LALTSKEHYRSPFEPVMPGVNFVE--YGNIEATRKLI--QPGKTAAVFVEPIQGEGGIYS 263
L L S SP P N + Y ++EA + L PG+ A V +EPI G G
Sbjct: 162 LGLPS-----SPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIV 216
Query: 264 ATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPI 323
FL+ LR+ + ALLVFDEV G R Y E +G+ PD+ TL K + GGLP+
Sbjct: 217 PDAGFLEGLREITLEHDALLVFDEVMTGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGLPV 275
Query: 324 GA----ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPA---FLASVSKK 374
GA + + VA A G T +G+PL A I L+ + P +L ++K+
Sbjct: 276 GAYGGKREIMQLVAPAGPMYQAG-TLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKR 332
>pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version
pdb|3FQA|B Chain B, Gabaculien Complex Of Gabaculine Resistant Gsam Version
Length = 427
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 98/358 (27%), Positives = 147/358 (41%), Gaps = 74/358 (20%)
Query: 61 NNKEVMEAEKKLLVGTYN---RA-------PVVLASGKGCKLYDAEGREYLDLSSGIAVN 110
+ E+ A +KL+ G + RA P+V K +D +G Y+D
Sbjct: 5 KSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPA 64
Query: 111 ALGHGDADWIKAV-------------VDQANVLTHVSNMYYSIPQIELAKRLVACSFADR 157
GH + I+A+ NVL + N ++P IE+ +
Sbjct: 65 ICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVN--DAVPSIEMVR---------- 112
Query: 158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRT----------MGA 207
F N+GTEA A ++ R + + + F +HG +
Sbjct: 113 --FVNSGTEACMAVLRLMRAYTGRD---------KIIKFEGCYHGHADMFLVKAGSGVAT 161
Query: 208 LALTSKEHYRSPFEPVMPGVNFVE--YGNIEATRKLI--QPGKTAAVFVEPIQGEGGIYS 263
L L S SP P N + Y ++EA + L PG+ A V +EPI G G
Sbjct: 162 LGLPS-----SPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIV 216
Query: 264 ATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPI 323
FL+ LR+ + ALLVFDEV G R Y E +G+ PD+ TL K + GGLP+
Sbjct: 217 PDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGLPV 275
Query: 324 GA----ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPA---FLASVSKK 374
GA + + VA A G T +G+PL A I L+ + P +L ++K+
Sbjct: 276 GAYGGKREIMQLVAPAGPMYQAG-TLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKR 332
>pdb|3FQ8|A Chain A, M248i Mutant Of Gsam
pdb|3FQ8|B Chain B, M248i Mutant Of Gsam
Length = 427
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 98/358 (27%), Positives = 147/358 (41%), Gaps = 74/358 (20%)
Query: 61 NNKEVMEAEKKLLVGTYN---RA-------PVVLASGKGCKLYDAEGREYLDLSSGIAVN 110
+ E+ A +KL+ G + RA P+V K +D +G Y+D
Sbjct: 5 KSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPA 64
Query: 111 ALGHGDADWIKAV-------------VDQANVLTHVSNMYYSIPQIELAKRLVACSFADR 157
GH + I+A+ NVL + N ++P IE+ +
Sbjct: 65 ICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVN--DAVPSIEMVR---------- 112
Query: 158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRT----------MGA 207
F N+GTEA A ++ R + + + F +HG +
Sbjct: 113 --FVNSGTEACMAVLRIMRAYTGRD---------KIIKFEGCYHGHADMFLVKAGSGVAT 161
Query: 208 LALTSKEHYRSPFEPVMPGVNFVE--YGNIEATRKLI--QPGKTAAVFVEPIQGEGGIYS 263
L L S SP P N + Y ++EA + L PG+ A V +EPI G G
Sbjct: 162 LGLPS-----SPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIV 216
Query: 264 ATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPI 323
FL+ LR+ + ALLVFDEV G R Y E +G+ PD+ TL K + GGLP+
Sbjct: 217 PDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGLPV 275
Query: 324 GA----ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPA---FLASVSKK 374
GA + + VA A G T +G+PL A I L+ + P +L ++K+
Sbjct: 276 GAYGGKREIMQLVAPAGPMYQAG-TLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKR 332
>pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
Length = 465
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 101/346 (29%), Positives = 143/346 (41%), Gaps = 34/346 (9%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
P+V+A G G + D +G Y++ GH I+A V++A L N+
Sbjct: 83 PLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHP-VIRAAVERA--LAVGLNLSTQT 139
Query: 141 PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN 198
L V F D V F+N+GTEAN A+ A ++F
Sbjct: 140 ENEALFAEAVCDRFPSIDLVRFTNSGTEANLMALATATAITGRKT---------VLAFDG 190
Query: 199 SFHGRTMGALALTSKEH-YRSPFEPVMPGVNFVEYGNIEATRKLIQPG--KTAAVFVEPI 255
+HG G L S +P+ V+ GV Y ++E T L++ AA+ VEP+
Sbjct: 191 GYHG---GLLNFASGHAPTNAPYHVVL-GV----YNDVEGTADLLKRHGHDCAAILVEPM 242
Query: 256 QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAK 315
G GG A + FL LR GALL+FDEV R A E GI D+ TL K
Sbjct: 243 LGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT--SRLSGGGAQEMLGISADLTTLGK 300
Query: 316 PLAGGLPIGA----ALVTEKVASAINYG-DHGSTFAGSPLVCNAAIAVLDKISNPAFLAS 370
+ GG+ GA + E+ A + H TF + L +A A L +I +
Sbjct: 301 YIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYTRQAASD 360
Query: 371 VSKKGHYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSATPVVDA 416
+S G F+ L + N GLG + I F S P+ A
Sbjct: 361 LSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHF--SRAPIRSA 404
>pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Aeropyrum Pernix
pdb|2ZSL|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix
pdb|2ZSM|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|C Chain C, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
Length = 434
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 90/340 (26%), Positives = 142/340 (41%), Gaps = 42/340 (12%)
Query: 59 GRNNKEVMEAEKKLLVGTYN---RA-----PVVLASGKGCKLYDAEGREYLDLSSGIAVN 110
G ++ + E K+L G N RA P + G+G LY +G +DL
Sbjct: 9 GEKSRMLFERTKELFPGGVNSPVRAAVKPYPFYVKRGEGAYLYTVDGARIVDLVLAYGPL 68
Query: 111 ALGHGDADWIKAVVDQANVLTHVSNMYYSIP---QIELAKRLVA-CSFADRVFFSNTGTE 166
LGH ++AV + Y P ++ LA++++ + F N+GTE
Sbjct: 69 ILGHKHPRVLEAVEEAL-----ARGWLYGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTE 123
Query: 167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL--ALTSKEHYRSPFEPVM 224
A AI+ AR + + F +HG L A ++ HY P +
Sbjct: 124 ATMTAIRLARGYTGRDL---------ILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGV 174
Query: 225 PGVN-----FVEYGNIEATRKLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACD 277
P Y ++EA ++ + A V VEP+ G+ +EFL L+
Sbjct: 175 PEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSR 234
Query: 278 DAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAIN 337
++GALL+ DEV G R G A ++ I DI+ L K + GG P+GA + +V S +
Sbjct: 235 ESGALLILDEVVTGF-RLGLEGAQGYFNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLT 293
Query: 338 YGD---HGSTFAGSPLVCNAAIAVLDKI-SNPAFLASVSK 373
+ TF P+ A +A L + P + SVS+
Sbjct: 294 PQGKVFNAGTFNAHPITMAAGLATLKALEEEPVY--SVSR 331
>pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|C Chain C, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|D Chain D, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0H|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0H|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0R|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb).
pdb|4A0R|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb)
Length = 831
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 88/383 (22%), Positives = 151/383 (39%), Gaps = 90/383 (23%)
Query: 141 PQIELAKRL---VACSFADRVFFSNTGTEANEAAIKFA-RKFQRHSN-----PDSKEPAT 191
P ++ A+ L V +A RV+FS+ G+ A E A+K A RKF N + K
Sbjct: 425 PALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVV 484
Query: 192 EFVSFTNSFHGRTMGALALTSKEHY----RSPFEP-----VMPGVNFV------------ 230
+ ++ S+HG T+GA+ + Y + P+ + P F+
Sbjct: 485 KVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPES 544
Query: 231 ------EYGNIEATRKLI----------------------------QPGKTAAVFVEP-I 255
EYG + ++ Q A+ +EP I
Sbjct: 545 FSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVI 604
Query: 256 QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAK 315
G GG++ F + L + C + ++FDEV G R G E G PDI AK
Sbjct: 605 HGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAK 664
Query: 316 PLAGGL-PIGAALVTEKVASAINYGD-------HGSTFAGSPLVCNAAIAVLDKISNPAF 367
L GG+ P+ L T+ V + + GD HG +++ + C A + +P
Sbjct: 665 LLTGGMVPLAVTLATDAVFDSFS-GDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPET 723
Query: 368 LASVSKKG----HYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSAT----------PV 413
+++ +G + E L Q+++ + V+ V +G + +E A+ +
Sbjct: 724 NHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNSGYASLYAKSL 783
Query: 414 VDACRDSGLLVLTAGKGNVVRLV 436
+ R+ G + T GNV+ L+
Sbjct: 784 LIMLREDG--IFTRPLGNVIYLM 804
>pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form.
pdb|4A0F|B Chain B, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form
Length = 831
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/348 (23%), Positives = 136/348 (39%), Gaps = 78/348 (22%)
Query: 141 PQIELAKRL---VACSFADRVFFSNTGTEANEAAIKFA-RKFQRHSN-----PDSKEPAT 191
P ++ A+ L V +A RV+FS+ G+ A E A+K A RKF N + K
Sbjct: 425 PALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKXAFRKFCVDHNFCEATEEEKHIVV 484
Query: 192 EFVSFTNSFHGRTMGALALTSKEHY----RSPFEP-----VMPGVNFV------------ 230
+ ++ S+HG T+GA + Y + P+ + P F+
Sbjct: 485 KVIALRGSYHGDTLGAXEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPES 544
Query: 231 ------EYGNIEATRKLIQPGKTA----------------------------AVFVEP-I 255
EYG + ++ + A A+ +EP I
Sbjct: 545 FSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVI 604
Query: 256 QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAK 315
G GG + F + L + C + ++FDEV G R G E G PDI AK
Sbjct: 605 HGAGGXHXVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAK 664
Query: 316 PLAGG-LPIGAALVTEKVASAINYGD-------HGSTFAGSPLVCNAAIAVLDKISNPAF 367
L GG +P+ L T+ V + + GD HG +++ C A + +P
Sbjct: 665 LLTGGXVPLAVTLATDAVFDSFS-GDSKLKALLHGHSYSAHAXGCATAAKAIQWFKDPET 723
Query: 368 LASVSKKG----HYFKETLKQKLARNPHVKDVRGLGLIIGIEFDVSAT 411
+++ +G + E L Q+++ + V+ V +G + +E A+
Sbjct: 724 NHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADAS 771
>pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase
(D-Phgat) From Pseudomonas Strutzeri St-201
Length = 453
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 130/320 (40%), Gaps = 26/320 (8%)
Query: 82 VVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIP 141
+ ++ +G D +G YLD G LGHG A+ A L+H S P
Sbjct: 41 LFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAI---AEALSHGVQYAASHP 97
Query: 142 -QIELAKRLVACSFADR-VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNS 199
++ A+R+VA + R + F+ +GTE A++ AR F + F
Sbjct: 98 LEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFTGRR---------MILRFEGH 148
Query: 200 FHGRTMGALALTSKEHYRSPFEPVMPGVN----FVEYGNIEATRKLI--QPGKTAAVFVE 253
+HG + + + P V+P + +IE R++ AA E
Sbjct: 149 YHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAE 208
Query: 254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL 313
P+ G+ + FL+ + GAL + DEV G R G + PD+ L
Sbjct: 209 PVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGMQALLDVQPDLTCL 267
Query: 314 AKPLAGGLPIGAALVTEKVASAINYGD-----HGSTFAGSPLVCNAAIAVLDKISNPAFL 368
AK AGGLP G E V ++ G H TF G+P+ AAIA +D I
Sbjct: 268 AKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTILEDDVC 327
Query: 369 ASVSKKGHYFKETLKQKLAR 388
A ++ G + +E + AR
Sbjct: 328 AKINDLGQFAREAMNHLFAR 347
>pdb|2Y4S|A Chain A, Barley Limit Dextrinase In Complex With Beta-Cyclodextrin
pdb|2Y5E|A Chain A, Barley Limit Dextrinase In Complex With Alpha-Cyclodextrin
pdb|4AIO|A Chain A, Crystal Structure Of The Starch Debranching Enzyme Barley
Limit Dextrinase
Length = 884
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 46/122 (37%), Gaps = 9/122 (7%)
Query: 138 YSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFT 197
YS P L+ A RV F NTG I + R +P+ + T F
Sbjct: 765 YSSPLFRLS---TANDIKQRVRFHNTGPSLVPGVIVMGIEDARGESPEMAQLDTNFSYVV 821
Query: 198 NSF----HGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEA-TRKLIQPGKTAAVFV 252
F H +M AL S P + V V EA T + PG+T +VFV
Sbjct: 822 TVFNVCPHEVSMDIPALASMGFELHPVQ-VNSSDTLVRKSAYEAATGRFTVPGRTVSVFV 880
Query: 253 EP 254
EP
Sbjct: 881 EP 882
>pdb|3IWG|A Chain A, Acetyltransferase From Gnat Family From Colwellia
Psychrerythraea.
pdb|3IWG|B Chain B, Acetyltransferase From Gnat Family From Colwellia
Psychrerythraea
Length = 276
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 69 EKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDA 117
E+K L G +++ + LA+G+ C+L+D EY DL +A + G G A
Sbjct: 178 ERKELFGYWHKGKL-LAAGE-CRLFDQYQTEYADLGXIVAQSNRGQGIA 224
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 262 YSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296
YS T + R+AC + ++F V CG G G
Sbjct: 1996 YSGTANLDRVTREACPELDYFVIFSSVSCGRGNAG 2030
>pdb|2F9J|A Chain A, 3.0 Angstrom Resolution Structure Of A Y22m Mutant Of The
Spliceosomal Protein P14 Bound To A Region Of Sf3b155
pdb|2F9J|B Chain B, 3.0 Angstrom Resolution Structure Of A Y22m Mutant Of The
Spliceosomal Protein P14 Bound To A Region Of Sf3b155
Length = 125
Score = 29.3 bits (64), Expect = 4.8, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 300 AHEHYGIFPDIMTLAKPLAGGLPIG---AALVTEKVASAINYGDHGSTFAGSPLVCNAAI 356
A E Y IF + + G P A +V E + A N DH S F VCN +
Sbjct: 32 AEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFN----VCNRYL 87
Query: 357 AVLDKISNPAFLASVSKKGHYFKETLKQKLARN 389
VL +N AF +KK + LK+K N
Sbjct: 88 VVLYYNANRAFQKMDTKKKEEQLKLLKEKYGIN 120
>pdb|2F9D|A Chain A, 2.5 Angstrom Resolution Structure Of The Spliceosomal
Protein P14 Bound To Region Of Sf3b155
pdb|2F9D|B Chain B, 2.5 Angstrom Resolution Structure Of The Spliceosomal
Protein P14 Bound To Region Of Sf3b155
Length = 125
Score = 29.3 bits (64), Expect = 4.8, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 300 AHEHYGIFPDIMTLAKPLAGGLPIG---AALVTEKVASAINYGDHGSTFAGSPLVCNAAI 356
A E Y IF + + G P A +V E + A N DH S F VCN +
Sbjct: 32 AEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFN----VCNRYL 87
Query: 357 AVLDKISNPAFLASVSKKGHYFKETLKQKLARN 389
VL +N AF +KK + LK+K N
Sbjct: 88 VVLYYNANRAFQKMDTKKKEEQLKLLKEKYGIN 120
>pdb|3FKJ|A Chain A, Crystal Structure Of A Putative Phosphosugar Isomerase
(Stm_0572) From Salmonella Typhimurium Lt2 At 2.12 A
Resolution
pdb|3FKJ|B Chain B, Crystal Structure Of A Putative Phosphosugar Isomerase
(Stm_0572) From Salmonella Typhimurium Lt2 At 2.12 A
Resolution
Length = 347
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 203 RTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIY 262
+ + + ++ S E++ PFE PG F+ + TR L A F+E QG+ +
Sbjct: 238 QWINSASIHSGEYFHGPFEITEPGTPFILLQSSGRTRPL---DDRAIRFIERYQGKLQLI 294
Query: 263 SATKEFLQFLRDACDDAGALLVFDEVQCGL 292
A K +Q D D G E CGL
Sbjct: 295 DADKLGIQ---DLSTDVG------EYFCGL 315
>pdb|3PGY|A Chain A, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|B Chain B, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|C Chain C, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|D Chain D, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant
Length = 415
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 23/117 (19%)
Query: 65 VMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVV 124
VMEA+ +L Y A G + Y G E++D++ IA+ D KA+
Sbjct: 42 VMEAQGSVLTNKY-------AEGYPGRRYYG-GCEFVDVTESIAI--------DRAKALF 85
Query: 125 DQANVLTHVSNMYYSIPQIELAKRLVACSFADRVF---FSNTGTEANEAAIKFARKF 178
HV+ +S PQ +A LVA D V S+ G + A + F+ KF
Sbjct: 86 GA----EHVNVQPHSGPQANMAVYLVALEMGDTVLGMNLSHGGHLTHGAPVNFSGKF 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,683,443
Number of Sequences: 62578
Number of extensions: 577905
Number of successful extensions: 1688
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1329
Number of HSP's gapped (non-prelim): 97
length of query: 465
length of database: 14,973,337
effective HSP length: 102
effective length of query: 363
effective length of database: 8,590,381
effective search space: 3118308303
effective search space used: 3118308303
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)