Query 012369
Match_columns 465
No_of_seqs 254 out of 1860
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 08:07:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012369.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012369hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qb0_A Actin-related protein 4 100.0 2.5E-70 8.6E-75 576.0 26.8 325 116-460 16-489 (498)
2 3dwl_A Actin-related protein 3 100.0 2.8E-70 9.6E-75 569.3 19.0 320 125-459 5-413 (427)
3 4fo0_A Actin-related protein 8 100.0 2.3E-63 7.7E-68 538.6 20.6 287 165-465 174-593 (593)
4 1k8k_B ARP2, actin-like protei 100.0 9.6E-64 3.3E-68 516.3 15.1 318 126-460 7-383 (394)
5 2fxu_A Alpha-actin-1, actin, a 100.0 7.4E-62 2.5E-66 499.0 26.6 319 125-460 5-367 (375)
6 1k8k_A ARP3, actin-like protei 100.0 3.3E-58 1.1E-62 478.1 26.6 317 125-459 5-404 (418)
7 4am6_A Actin-like protein ARP8 100.0 9.4E-49 3.2E-53 415.8 22.0 282 165-461 196-645 (655)
8 1jce_A ROD shape-determining p 100.0 6.6E-28 2.3E-32 243.5 17.1 280 126-446 4-331 (344)
9 2v7y_A Chaperone protein DNAK; 99.8 1.2E-18 4.2E-23 185.0 18.9 269 126-440 3-349 (509)
10 1dkg_D Molecular chaperone DNA 99.8 1.2E-18 4.3E-23 177.9 16.6 219 185-441 135-381 (383)
11 3h1q_A Ethanolamine utilizatio 99.8 2.3E-18 8E-23 167.6 16.4 236 127-439 30-272 (272)
12 3qfu_A 78 kDa glucose-regulate 99.7 4.2E-17 1.4E-21 166.8 19.7 214 185-441 153-392 (394)
13 3i33_A Heat shock-related 70 k 99.7 3E-16 1E-20 161.3 17.7 214 185-441 158-400 (404)
14 2kho_A Heat shock protein 70; 99.5 2.6E-13 8.8E-18 146.9 20.6 212 186-441 136-381 (605)
15 3l2o_B F-box only protein 4; s 99.5 2.3E-15 8E-20 146.3 3.5 61 36-96 3-63 (312)
16 1yuw_A Heat shock cognate 71 k 99.5 6.1E-13 2.1E-17 142.5 21.4 211 186-440 140-378 (554)
17 3d2f_A Heat shock protein homo 99.5 2.1E-12 7.3E-17 141.2 20.3 210 186-440 139-381 (675)
18 4gni_A Putative heat shock pro 99.4 5.1E-12 1.8E-16 130.0 18.3 216 185-442 150-401 (409)
19 4b9q_A Chaperone protein DNAK; 99.2 1.5E-10 5.1E-15 125.2 18.4 211 186-440 136-380 (605)
20 2ych_A Competence protein PILM 99.2 7.5E-11 2.6E-15 119.8 10.0 162 221-408 163-331 (377)
21 4a2a_A Cell division protein F 99.1 1.1E-09 3.6E-14 113.4 14.6 188 221-440 180-392 (419)
22 2fsj_A Hypothetical protein TA 99.0 2.9E-09 9.8E-14 107.3 11.7 99 186-291 120-240 (346)
23 2zgy_A Plasmid segregation pro 98.8 9.1E-09 3.1E-13 102.3 10.7 85 221-307 138-229 (320)
24 1fs1_A SKP2 F-BOX, cyclin A/CD 98.8 3.6E-09 1.2E-13 76.7 3.2 46 36-81 7-52 (53)
25 4apw_A ALP12; actin-like prote 98.6 6.2E-08 2.1E-12 96.9 6.5 68 222-290 148-219 (329)
26 3js6_A Uncharacterized PARM pr 98.5 9.1E-08 3.1E-12 96.7 7.3 168 223-441 154-336 (355)
27 1nbw_A Glycerol dehydratase re 98.3 7.1E-06 2.4E-10 85.8 13.2 74 230-312 392-470 (607)
28 2e31_A FBS1, F-box only protei 98.2 8.6E-07 2.9E-11 86.9 5.5 51 35-85 48-99 (297)
29 2d0o_A DIOL dehydratase-reacti 98.2 6.6E-06 2.3E-10 85.8 11.7 74 230-312 390-468 (610)
30 2ovr_B FBW7, F-BOX/WD repeat p 97.7 2.1E-05 7.1E-10 80.1 4.9 50 36-85 17-66 (445)
31 3v7d_B Cell division control p 97.6 2.6E-05 9E-10 79.4 3.9 51 36-86 13-64 (464)
32 1p22_A F-BOX/WD-repeat protein 97.6 1.2E-05 4E-10 81.9 1.1 50 37-86 10-63 (435)
33 2ast_B S-phase kinase-associat 96.8 0.00047 1.6E-08 67.5 2.4 46 36-81 7-52 (336)
34 4ehu_A Activator of 2-hydroxyi 96.6 0.0014 4.8E-08 63.0 4.6 48 382-439 205-252 (276)
35 1t6c_A Exopolyphosphatase; alp 95.7 0.038 1.3E-06 54.4 9.7 60 221-284 110-177 (315)
36 2qm1_A Glucokinase; alpha-beta 95.5 0.58 2E-05 45.4 17.4 69 361-439 250-319 (326)
37 3mdq_A Exopolyphosphatase; str 95.2 0.041 1.4E-06 54.2 7.8 60 221-284 102-170 (315)
38 3hi0_A Putative exopolyphospha 95.0 0.084 2.9E-06 55.4 10.0 59 221-283 113-178 (508)
39 3cer_A Possible exopolyphospha 94.9 0.052 1.8E-06 54.1 7.7 62 221-284 115-191 (343)
40 3vgl_A Glucokinase; ROK family 94.9 2 6.8E-05 41.7 19.2 70 361-440 240-311 (321)
41 1hux_A Activator of (R)-2-hydr 94.5 0.019 6.5E-07 55.2 3.4 61 384-456 209-269 (270)
42 3cet_A Conserved archaeal prot 94.4 0.076 2.6E-06 52.4 7.2 26 242-267 127-152 (334)
43 1u6z_A Exopolyphosphatase; alp 94.1 0.29 9.9E-06 51.4 11.6 60 221-284 109-176 (513)
44 2ews_A Pantothenate kinase; PA 93.7 0.15 5E-06 49.5 7.7 49 385-440 238-287 (287)
45 3r8e_A Hypothetical sugar kina 92.6 0.93 3.2E-05 44.1 12.0 69 361-439 248-317 (321)
46 2p1m_B Transport inhibitor res 92.5 0.048 1.6E-06 57.3 2.6 35 37-71 5-40 (594)
47 4htl_A Beta-glucoside kinase; 92.3 8.1 0.00028 36.9 19.5 66 361-440 225-290 (297)
48 3aap_A Ectonucleoside triphosp 92.2 0.81 2.8E-05 45.6 11.0 36 242-278 140-177 (353)
49 1z05_A Transcriptional regulat 91.8 8.1 0.00028 39.0 18.3 44 221-266 208-258 (429)
50 2gup_A ROK family protein; sug 90.9 1.3 4.6E-05 42.2 10.6 45 221-267 94-143 (292)
51 3vov_A Glucokinase, hexokinase 90.8 12 0.0004 35.8 18.4 67 361-439 225-293 (302)
52 1z6r_A MLC protein; transcript 90.5 12 0.0004 37.3 17.8 45 221-267 186-237 (406)
53 2i7n_A Pantothenate kinase 1; 88.2 2.5 8.6E-05 42.1 10.4 75 359-439 283-358 (360)
54 2ap1_A Putative regulator prot 87.8 6.2 0.00021 38.1 13.0 45 221-267 120-171 (327)
55 3ogk_B Coronatine-insensitive 84.7 0.35 1.2E-05 50.6 2.2 32 40-71 15-47 (592)
56 2aa4_A Mannac kinase, putative 83.1 4.5 0.00015 38.2 9.2 66 361-439 221-286 (289)
57 2yhw_A Bifunctional UDP-N-acet 82.1 37 0.0013 32.7 20.3 44 221-266 131-181 (343)
58 3cj1_A Ectonucleoside triphosp 79.8 10 0.00035 38.9 11.0 22 242-263 190-211 (456)
59 3zx3_A Ectonucleoside triphosp 79.7 15 0.00053 37.5 12.1 134 127-263 36-202 (452)
60 3bex_A Type III pantothenate k 73.4 31 0.0011 32.1 11.6 19 127-145 5-23 (249)
61 2h3g_X Biosynthetic protein; p 70.3 46 0.0016 31.4 12.0 18 128-145 3-20 (268)
62 3djc_A Type III pantothenate k 66.4 50 0.0017 31.1 11.4 19 127-145 4-22 (266)
63 4db3_A Glcnac kinase, N-acetyl 62.9 10 0.00035 36.7 6.0 68 361-439 257-324 (327)
64 3epq_A Putative fructokinase; 53.9 18 0.00061 34.7 5.9 69 361-439 212-287 (302)
65 1zbs_A Hypothetical protein PG 52.6 1.4E+02 0.0048 27.8 12.1 128 127-266 2-133 (291)
66 4hfx_A Transcription elongatio 52.3 5.8 0.0002 31.7 1.7 47 41-89 13-59 (97)
67 2hoe_A N-acetylglucosamine kin 44.0 28 0.00097 34.2 5.7 67 361-439 302-369 (380)
68 3htv_A D-allose kinase, alloki 42.5 59 0.002 30.9 7.7 62 386-447 242-305 (310)
69 2ch5_A NAGK protein; transfera 41.7 2.3E+02 0.0079 26.7 12.7 118 127-255 8-134 (347)
70 2kwv_A RAD30 homolog B, DNA po 39.7 13 0.00043 25.3 1.5 19 36-54 19-37 (48)
71 1saz_A Probable butyrate kinas 35.6 2E+02 0.0068 28.1 10.5 50 386-441 298-348 (381)
72 4db3_A Glcnac kinase, N-acetyl 35.4 2.2E+02 0.0074 27.0 10.5 44 221-266 120-170 (327)
73 2hoe_A N-acetylglucosamine kin 35.3 2.9E+02 0.0099 26.7 11.6 44 221-266 188-236 (380)
74 1zc6_A Probable N-acetylglucos 32.1 3.1E+02 0.011 25.4 11.5 125 127-266 13-146 (305)
75 3qbx_A Anhydro-N-acetylmuramic 30.9 23 0.00079 35.2 2.5 23 385-407 285-307 (371)
76 3eno_A Putative O-sialoglycopr 29.8 48 0.0017 32.2 4.7 26 384-409 250-275 (334)
77 2yhx_A Hexokinase B; transfera 29.0 61 0.0021 33.1 5.4 53 386-441 386-442 (457)
78 2ch5_A NAGK protein; transfera 29.0 44 0.0015 32.1 4.2 74 361-439 245-322 (347)
79 2ivn_A O-sialoglycoprotein end 25.3 63 0.0022 31.2 4.6 26 384-409 245-270 (330)
80 1saz_A Probable butyrate kinas 24.0 84 0.0029 30.9 5.3 24 243-267 177-200 (381)
81 2e2o_A Hexokinase; acetate and 20.6 58 0.002 30.5 3.1 37 221-263 86-123 (299)
No 1
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-70 Score=576.05 Aligned_cols=325 Identities=23% Similarity=0.423 Sum_probs=285.5
Q ss_pred ccccCCCCCCccEEEeCCcceEEEEEecCCCCCcccccccc-----------cCC-----------ccchH-------HH
Q 012369 116 HIYGQRAQVPGSVIIDGGSGYCKFGWSKYDCPSGRTATFLE-----------FGN-----------IESPM-------YS 166 (465)
Q Consensus 116 ~~y~~~~~~~~~VVID~GS~~~K~Gfage~~P~~~~~s~~~-----------~G~-----------~~~Pi-------~~ 166 (465)
.+|++++. ++||||+||++||+||||++.|+.++|++++ +|+ +.+|+ |+
T Consensus 16 ~~yggde~--~~iVID~GS~~~kaG~ag~~~P~~v~PSvVg~~~~~~~~~~~vG~e~~~~~r~~l~l~~Pi~~GvI~dwd 93 (498)
T 3qb0_A 16 QVYGGDEV--SAVVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTADEGNKKIFSEQSIGIPRKDYELKPIIENGLVIDWD 93 (498)
T ss_dssp ---CCCCB--SCEEEECCSSEEEEEETTCSSCSEEEESEEEEESSCSSCCEECCTTGGGSCCTTEEEEESEETTEESCHH
T ss_pred cccCCCCC--CeEEEECCCcEEEEEECCCCCeeeecCceeEEeccCCCccEEEecHHHhcCcCceEEeccCcCCEEccHH
Confidence 47999987 8999999999999999999999999988653 343 23566 78
Q ss_pred HHHHHHHHHHh-hcccCCCCC-CeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-ccCCeEEEeecchHHHHhcCCCc
Q 012369 167 RLRHFFATIYS-RMQVKPSTQ-PIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRTS 243 (465)
Q Consensus 167 ~l~~~~~~~~~-~L~v~~~~~-pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~g~~t 243 (465)
.++.+|+++|. .|+++|.+| ||||++|++++ +..|++ +.|+||| |++|+++++.+++||+||+|++|
T Consensus 94 ~~E~iw~~~f~~~L~v~p~~~~pvlltep~~n~------~~~Re~----~~eilFE~f~vpav~l~~~~vlalya~G~~t 163 (498)
T 3qb0_A 94 TAQEQWQWALQNELYLNSNSGIPALLTEPVWNS------TENRKK----SLEVLLEGMQFEACYLAPTSTCVSFAAGRPN 163 (498)
T ss_dssp HHHHHHHHHHHHTSCCSCCTTCCEEEEECTTCC------HHHHHH----HHHHHHTTSCCSEEEEEEHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHhhhCCCcccCCceEEEeCCCCc------HHHHHH----HHHHHHhhcCCCeEeecchHHHHHHHcCCCe
Confidence 99999999884 699999999 99999999875 666654 6777787 99999999999999999999999
Q ss_pred eEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhcC------------------CCCC---------
Q 012369 244 GIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNN------------------INFG--------- 296 (465)
Q Consensus 244 glVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~------------------~~~~--------- 296 (465)
|+|||+|++.|+|+||++|+++.+ +++++++||+++|++|.++|+.++ +.+.
T Consensus 164 glVVDiG~g~T~vvPI~~G~~l~~-ai~rl~vgG~~lt~~L~~lL~~~~i~P~~~i~~k~~~~~~~~~~~~~~~s~~~~~ 242 (498)
T 3qb0_A 164 CLVVDIGHDTCSVSPIVDGMTLSK-STRRNFIAGKFINHLIKKALEPKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYA 242 (498)
T ss_dssp EEEEEECSSCEEEEEEETTEECGG-GCEEESCSHHHHHHHHHHHTTTSCCCCSTTEEECSSSCEECCCSSCCCHHHHHHH
T ss_pred EEEEEcCCCcEEEEEEeCCEEccc-cceeccccHHHHHHHHHHHHHhccccchhhhcccccccccccCCCccCccHHHHH
Confidence 999999999999999999999998 899999999999999999998653 2221
Q ss_pred -cHHHHHHHHHhccccccc--hHHHh---hccccceEEecCCcEEEecce-ecccccccccCCcCCc-------------
Q 012369 297 -SLYTVRTLKEKLCYVAAD--YKAEL---SKDTQASLEIAGEGWFTLSKE-RFQTGEILFQPRMADV------------- 356 (465)
Q Consensus 297 -~~~~v~~iKe~~c~v~~d--~~~e~---~~~~~~~~~lpd~~~i~l~~e-r~~~~E~LF~P~~~~~------------- 356 (465)
..+++++|||++|||+.| ++++. .....+.|+||||+.|.++.| ||++||+||+|+++|.
T Consensus 243 ~~~~iv~~iKE~~c~Va~~~~~~~~~~~~~~~~~~~yeLPDG~~i~lg~E~Rf~~pE~LF~P~~~g~~~~~~~~~~~~~~ 322 (498)
T 3qb0_A 243 NNRGFFQECKETLCHICPTKTLEETKTELSSTAKRSIESPWNEEIVFDNETRYGFAEELFLPKEDDIPANWPRSNSGVVK 322 (498)
T ss_dssp HHHTHHHHHHHHTCCCCSSCHHHHHHHHHHTCCCEEEECSSSCEEEECHHHHHHHHHTTTSCCGGGSCTTSCCCSSSCCC
T ss_pred HHHHHHHHHHHhhEEecCCccHhHHhhhccCcCceEEECCCCCEEEECchHhhhCchhhCCHhHcCCccccccccccccc
Confidence 123789999999999986 55542 233567899999999999999 9999999999997754
Q ss_pred -------------------------------------------------------------------ccCCHHHHHHHHH
Q 012369 357 -------------------------------------------------------------------RTMGLDQAVALCM 369 (465)
Q Consensus 357 -------------------------------------------------------------------~~~~L~~~I~~sI 369 (465)
+..||+++|.++|
T Consensus 323 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~e~i~~sI 402 (498)
T 3qb0_A 323 TWRNDYVPLKRTKPSGVNKSDKKVTPTEEKEQEAVSKSTSPAANSADTPNETGKRPLEEEKPPKENNELIGLADLVYSSI 402 (498)
T ss_dssp CCSCCCCCCCBCC-----------------------------------------------------CCSCCHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCchHHHHHHH
Confidence 5579999999999
Q ss_pred hhcCCCCccccccccCceEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCC---CCCcchhhhhhHHhhcCCCCCc
Q 012369 370 DHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPP---PYGADTAWFGAKLVGNLSTFPG 446 (465)
Q Consensus 370 ~~~~~~dl~~r~~l~~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~---~~~~~~aW~Ggsilasl~tf~~ 446 (465)
++|+. |+ |+.|++||||+||+|++|||.+||++||+.++| .+ +++|+++ ++|++++|+||||||+|++|++
T Consensus 403 ~~cd~-d~--r~~L~~nIvLsGGst~~pGf~~Rl~~El~~l~p-~~--~i~v~~~~~~~er~~s~WiGgsilasl~~f~~ 476 (498)
T 3qb0_A 403 MSSDV-DL--RATLAHNVVLTGGTSSIPGLSDRLMTELNKILP-SL--KFRILTTGHTIERQYQSWLGGSILTSLGTFHQ 476 (498)
T ss_dssp HTSCT-TT--HHHHHTTEEEESGGGGSTTHHHHHHHHHHHHST-TS--CCCEECCSCTGGGGSHHHHHHHHHHTCHHHHH
T ss_pred HhCCH-HH--HHHHhcCEEEeCCccCchhHHHHHHHHHHHhCC-CC--eeEEEcCCCCCccCccEEcccEEEecCcchhc
Confidence 99998 87 799999999999999999999999999999999 44 4899987 6899999999999999999999
Q ss_pred cccccHHHHHhcCC
Q 012369 447 AWCATKKQFRRKSR 460 (465)
Q Consensus 447 ~w~ITk~eY~e~G~ 460 (465)
+| |||+||+|+|.
T Consensus 477 ~w-itk~EY~E~G~ 489 (498)
T 3qb0_A 477 LW-VGKKEYEEVGV 489 (498)
T ss_dssp TS-EEHHHHHTTCC
T ss_pred eE-EEHHHHhhhCc
Confidence 99 99999999996
No 2
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-70 Score=569.30 Aligned_cols=320 Identities=25% Similarity=0.447 Sum_probs=273.5
Q ss_pred CccEEEeCCcceEEEEEecCCCCCcccccccc---------------------------------------cCC------
Q 012369 125 PGSVIIDGGSGYCKFGWSKYDCPSGRTATFLE---------------------------------------FGN------ 159 (465)
Q Consensus 125 ~~~VVID~GS~~~K~Gfage~~P~~~~~s~~~---------------------------------------~G~------ 159 (465)
+++||||+||++||+||||++.|+.++|++++ +|+
T Consensus 5 ~~~iViDnGs~~~KaG~ag~~~P~~v~Ps~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~ 84 (427)
T 3dwl_A 5 NVPIIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIGNDALKKA 84 (427)
T ss_dssp CSCEEECCCSSBC-CEETTSSSCSCCCBCCEECC------------------------------CCSSCCEETHHHHHTH
T ss_pred CCeEEEECCCCeEEEEECCCCCCCCcCCceEEeecccccccccccccccccccccccccccccCcccCCeEEchHHhhCc
Confidence 47899999999999999999999999988652 121
Q ss_pred -----ccchH-------HHHHHHHHHHHH-hhcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-ccCCe
Q 012369 160 -----IESPM-------YSRLRHFFATIY-SRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPA 225 (465)
Q Consensus 160 -----~~~Pi-------~~~l~~~~~~~~-~~L~v~~~~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE-~~vpa 225 (465)
+.+|+ ||.++++|+++| +.|+++|++|||+|+||++++ +..|+ .+.|+||| |++|+
T Consensus 85 ~~~l~~~~Pi~~GvI~dwd~~e~iw~~~~~~~L~v~~~~~pvlltep~~~~------~~~re----~~~ei~FE~~~~p~ 154 (427)
T 3dwl_A 85 SAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNP------PENRE----NTAEIMFESFNCAG 154 (427)
T ss_dssp HHHCCCCCSEETTEECCHHHHHHHHHHHHHTTSCCCGGGCEEEEEECTTCC------HHHHH----HHHHHHTTTTCCSE
T ss_pred ccCcEEecCcccCeeccHHHHHHHHHHHHhHhhCCCCcCCcEEEEcCCCCC------HHHHH----HHHHHHHHhccCce
Confidence 34566 789999998876 689999999999999999875 66665 47778888 99999
Q ss_pred EEEeecchHHHHhcC--------CCceEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhcCCCCCc
Q 012369 226 VCAINQATLALYAAK--------RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGS 297 (465)
Q Consensus 226 v~~~~~~vlalya~g--------~~tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~~ 297 (465)
++++.+++||+|++| .+||+|||+|++.|+|+||++|+++.+ +++++++||+++|++|.++|+.++....+
T Consensus 155 v~l~~~~vla~~a~G~~~~~~~~~~tglVVDiG~g~T~v~PV~~G~~l~~-~~~rl~~gG~~lt~~L~~lL~~~~~~~~~ 233 (427)
T 3dwl_A 155 LYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGS-SIKTMPLAGRDVTYFVQSLLRDRNEPDSS 233 (427)
T ss_dssp EEEEEHHHHHHHGGGGSTTTCSCCCCEEEEEESSSCEEEEEEETTEECGG-GCEEESCCHHHHHHHHHHTTC--------
T ss_pred eeecchHHHHHHhcCCcccccCCCceEEEEECCCCceEEEEEECCEEehh-hheeccccHHHHHHHHHHHHHHcCCCchh
Confidence 999999999999999 689999999999999999999999998 89999999999999999999988876556
Q ss_pred HHHHHHHHHhccccccchHHHhhcc-----ccceEEe--cCCc--EEEecceecccccccccCCcCCcc-cCCHHHHHHH
Q 012369 298 LYTVRTLKEKLCYVAADYKAELSKD-----TQASLEI--AGEG--WFTLSKERFQTGEILFQPRMADVR-TMGLDQAVAL 367 (465)
Q Consensus 298 ~~~v~~iKe~~c~v~~d~~~e~~~~-----~~~~~~l--pd~~--~i~l~~er~~~~E~LF~P~~~~~~-~~~L~~~I~~ 367 (465)
.+++++|||++|||+.|+++++... ..+.|++ |||+ .+.++.|||++||+||+|+++|.+ ..+|+++|.+
T Consensus 234 ~~~~~~IKe~~cyv~~d~~~e~~~~~~~~~~~~~~~l~~~~g~~~~i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i~~ 313 (427)
T 3dwl_A 234 LKTAERIKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDN 313 (427)
T ss_dssp CHHHHHHHHHHCCCCSCHHHHHHHTTC-----CCBCC---------CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHHHHH
T ss_pred HHHHHHHHHhcCcccCCHHHHHHHhhcCccccceeEeeCCCCCeeEEEEChHhhhChhhccCchhcCCccCCCccHHHHH
Confidence 6899999999999999988876532 2356777 8887 789999999999999999999988 4899999999
Q ss_pred HHhhcCCCCccccccccCceEEecCCCCccchHHHHHHHHHhcCCCCC------------CCceEEeCCCCCcchhhhhh
Q 012369 368 CMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSI------------SNGIRVIPPPYGADTAWFGA 435 (465)
Q Consensus 368 sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~~------------~~~v~v~~~~~~~~~aW~Gg 435 (465)
+|++||+ |+ |+.|++|||||||+|++|||.+||++||+.++|... ..+|+|.++++|++++|+||
T Consensus 314 sI~~c~~-dl--r~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~~r~~s~WiGG 390 (427)
T 3dwl_A 314 VVQSSPI-DV--RKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGG 390 (427)
T ss_dssp HHHTSCH-HH--HHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCCCEECCTTCTTHHHHHH
T ss_pred HHHhCCH-HH--HHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecCCccccceecCc
Confidence 9999999 88 799999999999999999999999999999874311 12489999999999999999
Q ss_pred HHhhcCCCCCccccccHHHHHhcC
Q 012369 436 KLVGNLSTFPGAWCATKKQFRRKS 459 (465)
Q Consensus 436 silasl~tf~~~w~ITk~eY~e~G 459 (465)
||||+|++|+++| |||+||+|+|
T Consensus 391 Silasl~~f~~~w-itk~EYeE~G 413 (427)
T 3dwl_A 391 SLLAQTPEFGSYC-HTKADYEEYG 413 (427)
T ss_dssp HHHHHSTTHHHHS-EEHHHHHHSC
T ss_pred eeeccccchhhee-EEHHHHhhhC
Confidence 9999999999999 9999999999
No 3
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.3e-63 Score=538.63 Aligned_cols=287 Identities=18% Similarity=0.298 Sum_probs=221.4
Q ss_pred HHHHHHHHHHHH-hhcccCCCC---CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-ccCCeEEEeecchHHHHhc
Q 012369 165 YSRLRHFFATIY-SRMQVKPST---QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAA 239 (465)
Q Consensus 165 ~~~l~~~~~~~~-~~L~v~~~~---~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~ 239 (465)
|+.++.+|+|+| ++|+++|++ |||||++|++++ +..|+ .++|+||| |+||+++++.+++||+||+
T Consensus 174 wdd~e~iw~~~~~~~L~i~~~d~~~~pvlltep~~~~------~~~re----~~~eilFE~f~~pa~~~~~~~vla~ya~ 243 (593)
T 4fo0_A 174 LADIEVIWSHAIQKYLEIPLKDLKYYRCILLIPDIYN------KQHVK----ELVNMILMKMGFSGIVVHQESVCATYGS 243 (593)
T ss_dssp HHHHHHHHHHHHHHTSCCCGGGGGGCEEEEEECSSCC------HHHHH----HHHHHHHHTTCCSEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCchhccCCcEEEEeCCCCC------HHHHH----HHHHHHHHhcCCCeEEeechHHHHHHHC
Confidence 678999999987 579998876 999999999875 56554 56777787 9999999999999999999
Q ss_pred CCCceEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhcCCCCC--------cHHHHHHHHHhcccc
Q 012369 240 KRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG--------SLYTVRTLKEKLCYV 311 (465)
Q Consensus 240 g~~tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~--------~~~~v~~iKe~~c~v 311 (465)
|++||||||+|++.|+|+||+||+++.+ +++++++||++||++|+++|..+++.+. +.+++++|||++||+
T Consensus 244 G~~tglVVDiG~~~T~v~PV~dG~~l~~-~~~rl~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~d~~~v~~iKe~~c~v 322 (593)
T 4fo0_A 244 GLSSTCIVDVGDQKTSVCCVEDGVSHRN-TRLCLAYGGSDVSRCFYWLMQRAGFPYRECQLTNKMDCLLLQHLKETFCHL 322 (593)
T ss_dssp TCSEEEEEEECSSCEEEEEEESSCBCGG-GCEEESCCHHHHHHHHHHHHHHTTCSCTTCCTTCHHHHHHHHHHHHHHCBC
T ss_pred CCCceEEEEeCCCceeeeeeECCEEehh-heEEecccHHHHHHHHHHHHHhcCCCccccccccchhHHHHHHHHHHhccc
Confidence 9999999999999999999999999999 8999999999999999999999987653 257899999999999
Q ss_pred ccchHHHhhc----------------------------------------------------------------------
Q 012369 312 AADYKAELSK---------------------------------------------------------------------- 321 (465)
Q Consensus 312 ~~d~~~e~~~---------------------------------------------------------------------- 321 (465)
+.|+..+...
T Consensus 323 ~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~E~~~~p~~lf~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (593)
T 4fo0_A 323 DQDISGLQDHEFQIRHPDSPALLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQGDPEDPHDEHYLLATQSKQE 402 (593)
T ss_dssp CTTCCSCEEEEEEECCTTSCEEEEEEEECTHHHHHHHTTTSGGGGCCCSSCCEEECC-----------------------
T ss_pred ccchHHhhhhhhhcccCCCCceeeEEeccchhhcCchhhcChhhhcccccccchhhhhcccCcccchhhhhhhhcccchh
Confidence 8765321100
Q ss_pred ------cccceEEecCCcEEEecceecccccccccCCcC--------------------------------CcccCCHHH
Q 012369 322 ------DTQASLEIAGEGWFTLSKERFQTGEILFQPRMA--------------------------------DVRTMGLDQ 363 (465)
Q Consensus 322 ------~~~~~~~lpd~~~i~l~~er~~~~E~LF~P~~~--------------------------------~~~~~~L~~ 363 (465)
.....+++|+|..+.++.+|+.+||.||+|... +.+..||++
T Consensus 403 ~~~~~~~~~~~~~~p~g~~~~~~~e~~~~pe~lf~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gL~~ 482 (593)
T 4fo0_A 403 QSAKATADRKSASKPIGFEGDLRGQSSDLPERLHSQEVDLGSAQGDGLMAGNDSEEALTALMSRKTAISLFEGKALGLDK 482 (593)
T ss_dssp --------------------------------------------------------------------CHHHHSCCCHHH
T ss_pred hhhhcccccccccCCCCcccccccccccCchhccCcccccccccccccccccccccccccccccccccccccccCCCHHH
Confidence 011346778888889999999999999998642 123568999
Q ss_pred HHHHHHhhcCCCCccccccccCceEEecCCCCccchHHHHHHHHHhcCCCCCC---CceEEeCCC---CCcchhhhhhHH
Q 012369 364 AVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSIS---NGIRVIPPP---YGADTAWFGAKL 437 (465)
Q Consensus 364 ~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~~~---~~v~v~~~~---~~~~~aW~Ggsi 437 (465)
+|.++|.+|+..|+ |+.|++|||||||+|++|||.+||++||+.++|...+ .+|+|+++| +|++++|+||||
T Consensus 483 aI~~SI~~~~~~D~--r~~L~~NIvltGG~s~~pGf~~RL~~eL~~~~p~~~~~~~~~v~v~~~p~~~d~~~~aW~GgSi 560 (593)
T 4fo0_A 483 AILHSIDCCSSDDT--KKKMYSSILVVGGGLMFHKAQEFLQHRILNKMPPSFRRIIENVDVITRPKDMDPRLIAWKGGAV 560 (593)
T ss_dssp HHHHHHHTCSSHHH--HHHHHHEEEEESSTTCCBTHHHHHHHHHHHHSCHHHHHHSSCCEEESSGGGCCTTTHHHHHHHH
T ss_pred HHHHHHHhCCcHHH--HHHHhCCEEEEchhhchhcHHHHHHHHHHHhCcchhccccceEEEECCCCCCCCceeeehhhHH
Confidence 99999999984266 7899999999999999999999999999999986532 258999887 789999999999
Q ss_pred hhcCCCCCccccccHHHHHhcC------CCCcCC
Q 012369 438 VGNLSTFPGAWCATKKQFRRKS------RFNIMW 465 (465)
Q Consensus 438 lasl~tf~~~w~ITk~eY~e~G------~~~~~~ 465 (465)
+|+|++|+++| |||+||+|+| +-.|.|
T Consensus 561 lasL~~f~~~w-Itk~EYeE~G~~il~~kc~f~~ 593 (593)
T 4fo0_A 561 LACLDTTQELW-IYQREWQRFGVRMLRERAAFVW 593 (593)
T ss_dssp HHHCGGGGGTC-EEHHHHHHHTTHHHHHHCSSCC
T ss_pred HhcCccHHHee-ECHHHHHhhCcHHHhhcCCcCC
Confidence 99999999999 9999999999 445565
No 4
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*
Probab=100.00 E-value=9.6e-64 Score=516.31 Aligned_cols=318 Identities=25% Similarity=0.499 Sum_probs=155.1
Q ss_pred ccEEEeCCcceEEEEEecCCCCCcccccccc-------------------cCC----------ccchH-------HHHHH
Q 012369 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLE-------------------FGN----------IESPM-------YSRLR 169 (465)
Q Consensus 126 ~~VVID~GS~~~K~Gfage~~P~~~~~s~~~-------------------~G~----------~~~Pi-------~~~l~ 169 (465)
++||||+||++||+||+|++.|+.++|++++ +|+ +.+|+ |+.++
T Consensus 7 ~~ivID~Gs~~~k~G~ag~~~P~~~~Ps~v~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~~~~Pi~~G~i~dwd~~e 86 (394)
T 1k8k_B 7 KVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDMK 86 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEECCCCeEEEeeCCCCCcceeccceeEEEcccccccccCCCCCCeEEChHHHhcCCCceeeccccCCEEecHHHHH
Confidence 6899999999999999999999998887542 232 24576 56789
Q ss_pred HHHHHHH--hhcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-ccCCeEEEeecchHHHHhcCCCceEE
Q 012369 170 HFFATIY--SRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRTSGIV 246 (465)
Q Consensus 170 ~~~~~~~--~~L~v~~~~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~g~~tglV 246 (465)
.+|+++| +.|+++|+++||++++|++++ ...|++ +.+++|| +++|+++++++++||+|++|.++|+|
T Consensus 87 ~i~~~~~~~~~L~~~~~~~~vllt~p~~~~------~~~r~~----~~e~~fe~~~~~~~~~~~~~~~a~~a~g~~~~lV 156 (394)
T 1k8k_B 87 HLWDYTFGPEKLNIDTRNCKILLTEPPMNP------TKNREK----IVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVV 156 (394)
T ss_dssp -----------------------------------------------------------------------------CCE
T ss_pred HHHHHHhcccccCcCCCCCcEEEEECCCCC------HHHHHH----HHHHhhhccCCCeEEEEhhHHHHHHhCCCceEEE
Confidence 9999988 689999999999999998864 556654 6667777 99999999999999999999999999
Q ss_pred EeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhcCCCCC---cHHHHHHHHHhccccccchHHHhhc--
Q 012369 247 VNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG---SLYTVRTLKEKLCYVAADYKAELSK-- 321 (465)
Q Consensus 247 VDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~---~~~~v~~iKe~~c~v~~d~~~e~~~-- 321 (465)
||+|+++|+|+||++|+++.+ ++.++++||+++|++|.++|..+++++. +.+.+++||+++||++.|+..++..
T Consensus 157 VDiG~g~T~v~pv~~G~~~~~-~~~~~~~GG~~lt~~l~~~l~~~~~~~~~~~~~~~ae~iK~~~~~v~~d~~~~~~~~~ 235 (394)
T 1k8k_B 157 VDSGDGVTHICPVYEGFSLPH-LTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLAL 235 (394)
T ss_dssp EEECSSCEEEECEETTEECST-TCEEESCCHHHHHHHHHHHHHHTTCCCCTTTTHHHHHHHHHHHCCCCSSHHHHHHHHH
T ss_pred EEcCCCceEeeeeECCEEccc-ceEEeeccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhheeEecCHHHHHHhhc
Confidence 999999999999999999998 7889999999999999999999887774 5789999999999999888766532
Q ss_pred ---cccceEEecCCcEEEecceecccccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccCceEEecCCCCccc
Q 012369 322 ---DTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPG 398 (465)
Q Consensus 322 ---~~~~~~~lpd~~~i~l~~er~~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipG 398 (465)
.....|++|||+.+.++.|||.+||+||+|++++.+..+|+++|.++|.+|++ |+ |+.+++|||||||+|++||
T Consensus 236 ~~~~~~~~~~lpdg~~i~i~~erf~~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~~~-d~--r~~l~~nIvLtGG~s~~~G 312 (394)
T 1k8k_B 236 ETTVLVESYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADI-DT--RSEFYKHIVLSGGSTMYPG 312 (394)
T ss_dssp HCSTTCEEEECTTSCEEEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCT-TT--HHHHHTTCEEESGGGCSTT
T ss_pred cCCcCceEEECCCCCEEEECchhhcChHhhCCchhccCCCCCHHHHHHHHHHhCCH-HH--HHHHHhCEEEeCccccccc
Confidence 13457999999999999999999999999999999999999999999999998 87 7899999999999999999
Q ss_pred hHHHHHHHHHhcC-----------CCCCCCceEEeCCCCCcchhhhhhHHhhcCCCCC-ccccccHHHHHhcCC
Q 012369 399 LAERLEKELRGLL-----------PSSISNGIRVIPPPYGADTAWFGAKLVGNLSTFP-GAWCATKKQFRRKSR 460 (465)
Q Consensus 399 l~eRL~~EL~~l~-----------p~~~~~~v~v~~~~~~~~~aW~Ggsilasl~tf~-~~w~ITk~eY~e~G~ 460 (465)
|.+||++||..+. |... +++|.++++|.+++|+||||+|++++|+ ++| |||+||+|+|.
T Consensus 313 ~~~rl~~el~~~~~~~~~~~~~~~p~~~--~v~v~~~~~~~~~~w~Ggsilasl~~f~~~~~-itk~eY~e~G~ 383 (394)
T 1k8k_B 313 LPSRLERELKQLYLERVLKGDVEKLSKF--KIRIEDPPRRKHMVFLGGAVLADIMKDKDNFW-MTRQEYQEKGV 383 (394)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCCCTTCCC--CC------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhhcccccCCCCce--EEEEecCCCcceeEEhhhHHhhCCcCCcccee-ecHHHHhhhCH
Confidence 9999999999887 6554 3888888999999999999999999999 998 99999999994
No 5
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...
Probab=100.00 E-value=7.4e-62 Score=498.95 Aligned_cols=319 Identities=30% Similarity=0.604 Sum_probs=286.5
Q ss_pred CccEEEeCCcceEEEEEecCCCCCcccccccc-----------------cCC----------ccchH-------HHHHHH
Q 012369 125 PGSVIIDGGSGYCKFGWSKYDCPSGRTATFLE-----------------FGN----------IESPM-------YSRLRH 170 (465)
Q Consensus 125 ~~~VVID~GS~~~K~Gfage~~P~~~~~s~~~-----------------~G~----------~~~Pi-------~~~l~~ 170 (465)
.++||||+||+++|+||+|++.|+.++|++++ +|+ +.+|| |+.++.
T Consensus 5 ~~~ivID~Gs~~~k~G~~~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~vG~~a~~~~~~~~~~~Pi~~G~i~d~d~~e~ 84 (375)
T 2fxu_A 5 TTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEK 84 (375)
T ss_dssp CCCEEEEECSSEEEEEETTCSSCSEEEECCEEEECTTTC-------CCEEHHHHHHHTTSEEEECSEETTEECCHHHHHH
T ss_pred CceEEEECCCCeEEEEECCCCCCceeeccccccccccccccCCCCCCeEechhHhhcCcccceeccccCCcccCHHHHHH
Confidence 47899999999999999999999998887653 121 24566 789999
Q ss_pred HHHHHH-hhcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-ccCCeEEEeecchHHHHhcCCCceEEEe
Q 012369 171 FFATIY-SRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRTSGIVVN 248 (465)
Q Consensus 171 ~~~~~~-~~L~v~~~~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~g~~tglVVD 248 (465)
+|+++| +.|+++|+++|+++++|++++ ...|++ +.+++|| +|+|+++++++++||+|++|.++|+|||
T Consensus 85 i~~~~~~~~L~~~~~~~~vvit~p~~~~------~~~r~~----~~e~~fe~~g~~~~~~~~e~~aaa~a~g~~~~lVvD 154 (375)
T 2fxu_A 85 IWHHTFYNELRVAPEEHPTLLTEAPLNP------KANREK----MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLD 154 (375)
T ss_dssp HHHHHHHTTSCCCGGGSCEEEEECTTCC------HHHHHH----HHHHHHHTTCCSEEEEEEHHHHHHHHTTCSSEEEEE
T ss_pred HHHHHHHHhcCCCCcCCcEEEEeCCCCc------HHHHHH----HHHHHHHhcCcceEEEccchheeeeecCCCeEEEEE
Confidence 999988 689999999999999999875 566655 5566677 9999999999999999999999999999
Q ss_pred ecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhcCCCCC---cHHHHHHHHHhccccccchHHHhhc----
Q 012369 249 IGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG---SLYTVRTLKEKLCYVAADYKAELSK---- 321 (465)
Q Consensus 249 iG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~---~~~~v~~iKe~~c~v~~d~~~e~~~---- 321 (465)
+|+++|+|+||++|+++.+ +..++++||+++|++|.++|..+++++. +.+.+++||+++||++.|+.+++.+
T Consensus 155 iG~gtt~v~~v~~G~~~~~-~~~~~~~GG~~lt~~l~~~l~~~~~~~~~~~~~~~~e~iK~~~~~v~~~~~~e~~~~~~~ 233 (375)
T 2fxu_A 155 SGDGVTHNVPIYEGYALPH-AIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASS 233 (375)
T ss_dssp ECSSCEEEEEEETTEECGG-GCEEESCCHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHCCCCSSHHHHHHHHHHC
T ss_pred cCCCceEEeEeECCEEecc-ceEEeccCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhcccHHHHHHhhccc
Confidence 9999999999999999998 7889999999999999999999887775 3578999999999999888776543
Q ss_pred -cccceEEecCCcEEEecceecccccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccCceEEecCCCCccchH
Q 012369 322 -DTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLA 400 (465)
Q Consensus 322 -~~~~~~~lpd~~~i~l~~er~~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipGl~ 400 (465)
.....|++|||+.+.++.+||.+||.||+|.+++.+..+|+++|.++|++|++ |+ |+.+++|||||||+|++|||.
T Consensus 234 ~~~~~~~~lpdg~~i~i~~erf~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~-~~--~~~l~~~IvLtGG~s~~pG~~ 310 (375)
T 2fxu_A 234 SSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDI-DI--RKDLYANNVMSGGTTMYPGIA 310 (375)
T ss_dssp STTCEEEECTTSCEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCH-HH--HHHHHTCEEEESGGGCSTTHH
T ss_pred CccCeEEECCCCCEEEEChhheechHhhCCCccCCCCCCCHHHHHHHHHHhCCH-HH--HHHHHhCcEeeCCCCCCccHH
Confidence 13567999999999999999999999999999999999999999999999998 87 789999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcCCCCCccccccHHHHHhcCC
Q 012369 401 ERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNLSTFPGAWCATKKQFRRKSR 460 (465)
Q Consensus 401 eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl~tf~~~w~ITk~eY~e~G~ 460 (465)
+||++||..+.|.... ++|..+++|.+++|+||+++|++++|+++| |||+||+|+|.
T Consensus 311 ~rl~~el~~~~p~~~~--v~v~~~~~p~~~~w~G~si~a~l~~f~~~~-itk~ey~e~G~ 367 (375)
T 2fxu_A 311 DRMQKEITALAPSTMK--IKIIAPPERKYSVWIGGSILASLSTFQQMW-ITKQEYDEAGP 367 (375)
T ss_dssp HHHHHHHHHHSCTTCC--CCEECCTTTTSHHHHHHHHHHHCGGGGGGS-EEHHHHHHHCG
T ss_pred HHHHHHHHHhCCCCee--EEEEcCCCCCccEEcchHHhhCcccHhhce-eeHHHHhhhCh
Confidence 9999999999987654 888888999999999999999999999999 99999999994
No 6
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Probab=100.00 E-value=3.3e-58 Score=478.07 Aligned_cols=317 Identities=23% Similarity=0.448 Sum_probs=277.8
Q ss_pred CccEEEeCCcceEEEEEecCCCCCcccccccc-------------------------cCC---------ccchH------
Q 012369 125 PGSVIIDGGSGYCKFGWSKYDCPSGRTATFLE-------------------------FGN---------IESPM------ 164 (465)
Q Consensus 125 ~~~VVID~GS~~~K~Gfage~~P~~~~~s~~~-------------------------~G~---------~~~Pi------ 164 (465)
+++||||+||+++|+||+|++.|+.++|++++ +|+ +.+|+
T Consensus 5 ~~~ivID~Gs~~~k~G~~~~~~p~~~~Ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~a~~~~~~~~~~pi~~G~i~ 84 (418)
T 1k8k_A 5 LPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEKPTYATKWPIRHGIVE 84 (418)
T ss_dssp SCCEEEEECSSEEEEEETTCSSCSEEEESCEEECC-----------CCCTTGGGCEEEGGGGTSCTTSEEECCEETTEES
T ss_pred CCeEEEECCCCeEEEeeCCCCCCCCcCCceEEEECcccccccccccccccccccCeEEChHHHhcCCCEEeccccCCEEC
Confidence 36899999999999999999999988887542 221 23566
Q ss_pred -HHHHHHHHHHHH-hhcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-ccCCeEEEeecchHHHHh---
Q 012369 165 -YSRLRHFFATIY-SRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYA--- 238 (465)
Q Consensus 165 -~~~l~~~~~~~~-~~L~v~~~~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya--- 238 (465)
|+.++.+|++++ +.|+++|+++++++++|++++ ...|++ +.+++|| +|++++++++++++|+|+
T Consensus 85 d~d~~e~i~~~~~~~~L~~~~~~~~vvit~p~~~~------~~~r~~----~~e~~fe~~g~~~~~l~~ep~aa~~a~~~ 154 (418)
T 1k8k_A 85 DWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNT------PENREY----TAEIMFESFNVPGLYIAVQAVLALAASWT 154 (418)
T ss_dssp CHHHHHHHHHHHHHTTTCCCGGGCCEEEEECTTCC------HHHHHH----HHHHHHHTSCCSEEEEEEHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHhccCCCCCCCcEEEEeCCCCC------HHHHHH----HHHHHHHhcCCCEEEEechHHHHhhhhhc
Confidence 688999999988 579999999999999999875 566665 5566666 999999999999999999
Q ss_pred ------cCCCceEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhcCCCCC---cHHHHHHHHHhcc
Q 012369 239 ------AKRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG---SLYTVRTLKEKLC 309 (465)
Q Consensus 239 ------~g~~tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~---~~~~v~~iKe~~c 309 (465)
.|. +|+|||+|+++|+|+||++|+++.+ ++.++++||+++|++|.++|.+++..+. +.+.++++|+++|
T Consensus 155 ~~~~~~~~~-~glVvDiG~gtt~v~~v~~G~~~~~-~~~~~~lGG~~lt~~l~~~l~~~~~~~~~~~~~~~~e~iK~~~~ 232 (418)
T 1k8k_A 155 SRQVGERTL-TGTVIDSGDGVTHVIPVAEGYVIGS-CIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYS 232 (418)
T ss_dssp STTCCSCCC-CEEEEEESSSCEEEEEEETTEECGG-GCEEESCSHHHHHHHHHHHHHTTCCCCCGGGHHHHHHHHHHHHC
T ss_pred ccccCCCCC-eEEEEEcCCCceEEEEeECCEEccc-ceEEEeCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhc
Confidence 566 9999999999999999999999998 7899999999999999999998887654 3578999999999
Q ss_pred ccccchHHHhhcc------ccceEEecCCc-----EEEecceecccccccccCCcCCccc-CCHHHHHHHHHhhcCCCCc
Q 012369 310 YVAADYKAELSKD------TQASLEIAGEG-----WFTLSKERFQTGEILFQPRMADVRT-MGLDQAVALCMDHCHYAEL 377 (465)
Q Consensus 310 ~v~~d~~~e~~~~------~~~~~~lpd~~-----~i~l~~er~~~~E~LF~P~~~~~~~-~~L~~~I~~sI~~~~~~dl 377 (465)
|++.|+.+++.+. ....|++||+. .+.++.|||.+||+||+|.+.+.+. .+|+++|.++|++|++ |+
T Consensus 233 ~v~~~~~~e~~~~~~~~~~~~~~~~lpd~~~~~~~~i~l~~erf~~~E~lF~P~~~~~~~~~~i~~~i~~si~~~~~-~~ 311 (418)
T 1k8k_A 233 YVCPDLVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPI-DV 311 (418)
T ss_dssp CCCSCHHHHHHHHHHSGGGTCEEEEEECTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCG-GG
T ss_pred hhcccHHHHHHhhcccccccceeEECCCCCCCcccEEEeChHHhhCcHhhCCCccCCCCCCCCHHHHHHHHHHcCCH-HH
Confidence 9998887665321 23579999988 8999999999999999999888774 7999999999999998 87
Q ss_pred cccccccCceEEecCCCCccchHHHHHHHHHhcC----------------CCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 012369 378 SGDDAWFKTVILTGGSACLPGLAERLEKELRGLL----------------PSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (465)
Q Consensus 378 ~~r~~l~~NIvLtGG~S~ipGl~eRL~~EL~~l~----------------p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (465)
|+.+++|||||||+|++|||.+||++||..++ |... +++|.++++|.+++|+||||+|++
T Consensus 312 --~~~l~~~IvL~GG~s~~pg~~~rl~~el~~~~~~~~~~~~~~~~~~~~p~~~--~v~v~~~~~~~~~~w~Ggsilasl 387 (418)
T 1k8k_A 312 --RRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPI--DVQVITHHMQRYAVWFGGSMLAST 387 (418)
T ss_dssp --TTHHHHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCC--CCCEECCTTCTTHHHHHHHHHTTS
T ss_pred --HHHHHhceEEeCCccccccHHHHHHHHHHHhhccccccccccccccCCCCce--eEEEeCCCccccceeHhHHHHHcC
Confidence 68999999999999999999999999999875 3433 488999999999999999999999
Q ss_pred CCCCccccccHHHHHhcC
Q 012369 442 STFPGAWCATKKQFRRKS 459 (465)
Q Consensus 442 ~tf~~~w~ITk~eY~e~G 459 (465)
++|+++| |||+||+|+|
T Consensus 388 ~~f~~~~-itk~ey~e~G 404 (418)
T 1k8k_A 388 PEFYQVC-HTKKDYEEIG 404 (418)
T ss_dssp HHHHHHS-EEHHHHHHHC
T ss_pred ccHhheE-EEHHHHhhhC
Confidence 9999998 9999999999
No 7
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*
Probab=100.00 E-value=9.4e-49 Score=415.83 Aligned_cols=282 Identities=22% Similarity=0.344 Sum_probs=231.4
Q ss_pred HHHHHHHHHHHHh--hcccCCC---CCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-ccCCeEEEeecchHHHHh
Q 012369 165 YSRLRHFFATIYS--RMQVKPS---TQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYA 238 (465)
Q Consensus 165 ~~~l~~~~~~~~~--~L~v~~~---~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya 238 (465)
|+.++.+|+++|. +|+++|+ ++||||++|++++ +..|++ ++|+||| |++|+++++.+++||+||
T Consensus 196 WD~mE~Iw~y~f~~~~L~V~p~~~~e~pVLLTEPplnp------~~~REk----m~EIlFE~fgvpavyl~~qavlAlya 265 (655)
T 4am6_A 196 ISDVTKLLEHALNSETLNVKPTKFNQYKVVLVIPDIFK------KSHVET----FIRVLLTELQFQAVAIIQESLATCYG 265 (655)
T ss_dssp HHHHHHHHHHHHBSSSCBCCGGGGGGCEEEEEECTTCC------HHHHHH----HHHHHHHTSCCSEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccccccccCCCcEEEEeCCCCC------HHHHHH----HHHHHHhhcCCCeeeeccHHHHHHHh
Confidence 6789999999986 7999996 8999999999875 666654 6677777 999999999999999999
Q ss_pred cC-CCceEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhcCC-----CCC---cHHHHHHHHHhcc
Q 012369 239 AK-RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNI-----NFG---SLYTVRTLKEKLC 309 (465)
Q Consensus 239 ~g-~~tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~~-----~~~---~~~~v~~iKe~~c 309 (465)
+| .++|||||+|++.|+|+||++|+++.+ +++++++||+++|++|.++|..+++ ++. +.+++++|||++|
T Consensus 266 sGl~ttGLVVDiG~g~T~VvPV~eG~vl~~-ai~rL~iGG~dLT~yL~kLL~~rgypy~~~~f~t~~e~eiVrdIKEk~C 344 (655)
T 4am6_A 266 AGISTSTCVVNIGAAETRIACVDEGTVLEH-SAITLDYGGDDITRLFALFLLQSDFPLQDWKIDSKHGWLLAERLKKNFT 344 (655)
T ss_dssp SCCSSCEEEEEECSSCEEEEEEETTEECGG-GCEEESCCHHHHHHHHHHHHHHTTCSCCSCCTTSHHHHHHHHHHHHHHC
T ss_pred CCCCCceEEEcCCCceEEEEEEeCCEEEhh-heeeecchHHHHHHHHHHHHHHcCCCccccCCCCcchHHHHHHHHHheE
Confidence 99 699999999999999999999999999 8999999999999999999999986 344 3578999999999
Q ss_pred cc-ccchHHHhhccccceEEecCC----cEEEecceecccccccccCCcCCc----------------------------
Q 012369 310 YV-AADYKAELSKDTQASLEIAGE----GWFTLSKERFQTGEILFQPRMADV---------------------------- 356 (465)
Q Consensus 310 ~v-~~d~~~e~~~~~~~~~~lpd~----~~i~l~~er~~~~E~LF~P~~~~~---------------------------- 356 (465)
|| ..|+.... .......|++ ..+.++.|||.+||+||+|.+++.
T Consensus 345 yVs~~Di~~q~---~~f~~r~P~~~~~ky~i~vgdErflaPe~lF~Pei~~~~~~~~~~~~~~~~~~~~s~d~y~~~~nd 421 (655)
T 4am6_A 345 TFQDADVAVQL---YNFMNRSPNQPTEKYEFKLFDEVMLAPLALFFPQIFKLIRTSSHKNSSLEFQLPESRDLFTNELND 421 (655)
T ss_dssp CCCGGGCCSEE---EEEEECCSSSCEEEEEEEESSHHHHHHHGGGSTHHHHHTSCCCCCCHHHHTTSCCCBCTTTCCBCS
T ss_pred EEcccchhhhh---hcceeccCCCCCcceEEEECCeehhCchhcCChhhcccccccccccchhhhhcCccccccCCCCCC
Confidence 99 56652111 0111123543 368899999999999999976321
Q ss_pred ---------------------------------------------------ccCCHHHHHHHHHhhcCC-CCcccccccc
Q 012369 357 ---------------------------------------------------RTMGLDQAVALCMDHCHY-AELSGDDAWF 384 (465)
Q Consensus 357 ---------------------------------------------------~~~~L~~~I~~sI~~~~~-~dl~~r~~l~ 384 (465)
...+|.++|.+||.++.. .|+..-+++|
T Consensus 422 ~~S~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pLdkAIi~SIt~a~~~~d~~k~~~~y 501 (655)
T 4am6_A 422 WNSLSQFESKEGNLYCDLNDDLKILNRILDAHNIIDQLQDKPENYGNTLKENFAPLEKAIVQSIANASITADVTRMNSFY 501 (655)
T ss_dssp CCCHHHHHHHTTCCGGGCCSHHHHHHHHHHHHHHHHHHHTSSCSCSCSSCCCCCCHHHHHHHHHHHHHHTSCGGGHHHHH
T ss_pred ccchhHHhhhccccCCCCccHhhhhhhhhcccccccccccCCcccccccccccccHHHHHHHHHHhhhccccHHHHHHHh
Confidence 014899999999995432 2664335999
Q ss_pred CceEEecCCCCccchHHHHHHHHHhcCCCCC-------------------------------------------------
Q 012369 385 KTVILTGGSACLPGLAERLEKELRGLLPSSI------------------------------------------------- 415 (465)
Q Consensus 385 ~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~~------------------------------------------------- 415 (465)
+||+++||+|+||||...|...|...-|...
T Consensus 502 ~nilivGggski~g~~~~L~dri~i~rp~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (655)
T 4am6_A 502 SNILIVGGSSKIPALDFILTDRINIWRPSLLSSASFPQFYKKLTKEIKDLEGHYVNAPDKTEDENKQILQAQIKEKIVEE 581 (655)
T ss_dssp TCEEEESTTCCCTTHHHHHHHHHHHHSCSTTTBTTHHHHHHHHHHHHHHHHSTTCSCCSSSCCSSTTSTTHHHHHHHHHH
T ss_pred hcEEEEcCcccCccHHHHHHHHHHhhCcccccccccHHHHHHHHHhhhhhhhhhccccccccccchhhhhhhhhhhhhhh
Confidence 9999999999999998888877766444221
Q ss_pred ----------------CCceEEeCCCCC---cchhhhhhHHhhcCCCCCccccccHHHHHhcCCC
Q 012369 416 ----------------SNGIRVIPPPYG---ADTAWFGAKLVGNLSTFPGAWCATKKQFRRKSRF 461 (465)
Q Consensus 416 ----------------~~~v~v~~~~~~---~~~aW~Ggsilasl~tf~~~w~ITk~eY~e~G~~ 461 (465)
..+|+|+++|.+ ++++|+||||+|+|++|+++| |||+||+|.|..
T Consensus 582 l~~~~~~~~~~~~~~~~~~i~V~~~p~~~d~~~~~W~GgSvla~l~~f~e~w-It~~Eyde~G~~ 645 (655)
T 4am6_A 582 LEEQHQNIEHQNGNEHIFPVSIIPPPRDMNPALIIWKGASVLAQIKLVEELF-ITNSDWDVHGSR 645 (655)
T ss_dssp HHHHHHHHHHTTSCCCBCCCCEECCCTTSCGGGHHHHHHHHHTTSHHHHHHC-EEHHHHHHHGGG
T ss_pred hhhhhhhhhhccccCCceeeEEeCCccccCcceeEEecceeeeecccHhhee-ecHHHHhhhcch
Confidence 013889999876 899999999999999999999 999999999943
No 8
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=99.95 E-value=6.6e-28 Score=243.47 Aligned_cols=280 Identities=18% Similarity=0.184 Sum_probs=207.8
Q ss_pred ccEEEeCCcceEEEEEecCCCCCcccccccc----------cCC--------------ccchH-------HHHHHHHHHH
Q 012369 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLE----------FGN--------------IESPM-------YSRLRHFFAT 174 (465)
Q Consensus 126 ~~VVID~GS~~~K~Gfage~~P~~~~~s~~~----------~G~--------------~~~Pi-------~~~l~~~~~~ 174 (465)
.+|+||+||.++|+|++++. |...+|+++. +|+ ..+|+ ++..+.+|.+
T Consensus 4 ~~igIDlGT~~s~v~~~~~~-~~~~~PS~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~~~p~~~g~i~~~~~~~~i~~~ 82 (344)
T 1jce_A 4 KDIGIDLGTANTLVFLRGKG-IVVNEPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKAIRPMRDGVIADYTVALVMLRY 82 (344)
T ss_dssp CEEEEEECSSEEEEEETTTE-EEEEEESCEEEETTTCCEEEESHHHHTTTTCCCTTEEEECCEETTEESSHHHHHHHHHH
T ss_pred ceEEEEcCcCcEEEEECCCC-EEEeeCcEEEEecCCCcEEEEcHHHHHhcccCCCCeEEEecCCCCeeCChHHHHHHHHH
Confidence 57999999999999998865 5444555442 221 12344 4567888888
Q ss_pred HHhhccc-C-CCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhcCC-----CceEEE
Q 012369 175 IYSRMQV-K-PSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVV 247 (465)
Q Consensus 175 ~~~~L~v-~-~~~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~g~-----~tglVV 247 (465)
+++++.. . +...++++++|...+ ...|+.+++.+ +. +|++.+.++++|++|+++++. .+.+||
T Consensus 83 ~l~~~~~~~~~~~~~~vitvP~~~~------~~~r~~~~~a~-~~---aG~~~~~li~ep~Aaa~~~~~~~~~~~~~lVv 152 (344)
T 1jce_A 83 FINKAKGGMNLFKPRVVIGVPIGIT------DVERRAILDAG-LE---AGASKVFLIEEPMAAAIGSNLNVEEPSGNMVV 152 (344)
T ss_dssp HHHHHHTSCCSCCCEEEEEECTTCC------HHHHHHHHHHH-HH---TTCSEEEEEEHHHHHHHHTTCCTTSSSCEEEE
T ss_pred HHHHHhhccccCCCeEEEEECCCCC------HHHHHHHHHHH-HH---cCCCeEeccCCHHHHHHhcCCCCCCCceEEEE
Confidence 8876543 3 456889999998764 56676655532 32 999999999999999999986 689999
Q ss_pred eecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhc-CCCCCcHHHHHHHHHhccccccchHHHhhccccce
Q 012369 248 NIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQN-NINFGSLYTVRTLKEKLCYVAADYKAELSKDTQAS 326 (465)
Q Consensus 248 DiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~-~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~ 326 (465)
|+|+++|+++++..|.++.. ...++||+++|+.|.+.+.++ +.. .+...+|++|+++|+...+...+ ...
T Consensus 153 DiGggttdvsv~~~~~~~~~---~~~~lGG~~id~~l~~~l~~~~~~~-~~~~~ae~~K~~l~~~~~~~~~~-----~~~ 223 (344)
T 1jce_A 153 DIGGGTTEVAVISLGSIVTW---ESIRIAGDEMDEAIVQYVRETYRVA-IGERTAERVKIEIGNVFPSKEND-----ELE 223 (344)
T ss_dssp EECSSCEEEEEEETTEEEEE---EEESCSHHHHHHHHHHHHHHHHCEE-CCHHHHHHHHHHHCBCSCCHHHH-----HCE
T ss_pred EeCCCeEEEEEEEcCCEEee---CCCCccChhHHHHHHHHHHHHhCcc-cCHHHHHHHHHHHhccCccccCC-----cce
Confidence 99999999999999998754 568999999999999988764 222 24678999999999876543211 112
Q ss_pred EEec-----CCc--EEEecceecccccccccCCcCCcccCCHHHHHHHHHhhcCCCCcccccccc-CceEEecCCCCccc
Q 012369 327 LEIA-----GEG--WFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWF-KTVILTGGSACLPG 398 (465)
Q Consensus 327 ~~lp-----d~~--~i~l~~er~~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~-~NIvLtGG~S~ipG 398 (465)
++++ +|. .+.++.+++. .+|+|.. ..+.+.|.++|++++. ++ +.+++ ++|+|+||+|++||
T Consensus 224 ~~~~~~~~~~g~~~~~~i~~~~~~---~~~~~~~-----~~i~~~i~~~l~~~~~-~~--~~~~~~~~IvL~GG~s~~p~ 292 (344)
T 1jce_A 224 TTVSGIDLSTGLPRKLTLKGGEVR---EALRSVV-----VAIVESVRTTLEKTPP-EL--VSDIIERGIFLTGGGSLLRG 292 (344)
T ss_dssp EEEEEEETTTTEEEEEEEEHHHHH---HHTHHHH-----HHHHHHHHHHHHTSCH-HH--HHHHHHHCEEEESGGGCSBT
T ss_pred EEEeccccCCCCceeEEEeHHHHH---HHHHHHH-----HHHHHHHHHHHHhCCc-hh--ccchhhCcEEEECccccchH
Confidence 3333 443 4556655543 4555542 3588899999999876 54 35667 79999999999999
Q ss_pred hHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc-CCCCCc
Q 012369 399 LAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN-LSTFPG 446 (465)
Q Consensus 399 l~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas-l~tf~~ 446 (465)
|.++|++++. .++..+.+|.+++|.||++++. +++|++
T Consensus 293 l~~~l~~~~~----------~~v~~~~~p~~ava~Gaa~~a~~~~~~~~ 331 (344)
T 1jce_A 293 LDTLLQKETG----------ISVIRSEEPLTAVAKGAGMVLDKVNILKK 331 (344)
T ss_dssp HHHHHHHHHS----------SCEEECSSTTTHHHHHHHHGGGCHHHHTT
T ss_pred HHHHHHHHHC----------CCccccCChHHHHHHHHHHHHhChHHHHH
Confidence 9999999995 1233355778999999999998 577754
No 9
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=99.79 E-value=1.2e-18 Score=184.96 Aligned_cols=269 Identities=19% Similarity=0.168 Sum_probs=180.9
Q ss_pred ccEEEeCCcceEEEEEecCCCCCcc--------ccccccc-------CC------ccc-------------hH-------
Q 012369 126 GSVIIDGGSGYCKFGWSKYDCPSGR--------TATFLEF-------GN------IES-------------PM------- 164 (465)
Q Consensus 126 ~~VVID~GS~~~K~Gfage~~P~~~--------~~s~~~~-------G~------~~~-------------Pi------- 164 (465)
.+|.||+||.++++|++.+..|..+ .||++.+ |+ ... |+
T Consensus 3 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p~~~~~~Kr~lg~p~~~~~~g~ 82 (509)
T 2v7y_A 3 KIIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAFKNGERLVGEVAKRQAITNPNTIISIKRHMGTDYKVEIEGK 82 (509)
T ss_dssp CEEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECEEEESSSSEEESHHHHTTTTTCSSEEECGGGTTTSCCCEEETTE
T ss_pred CEEEEEcCCceEEEEEEECCEEEEEECCCCCcccceEEEECCCcEEECHHHHHhHHhCCCcHHHHHHhcCCCcEEEECCE
Confidence 5799999999999999988777655 5665432 21 001 22
Q ss_pred ----HHHHHHHHHHHHh----hcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEEEeecchHHH
Q 012369 165 ----YSRLRHFFATIYS----RMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLAL 236 (465)
Q Consensus 165 ----~~~l~~~~~~~~~----~L~v~~~~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlal 236 (465)
.+.+..+++++.+ .++ .....++++.|...+ ...|+.+++.+ +. .|++.+.++++|.+|+
T Consensus 83 ~~~~~ei~a~~L~~l~~~ae~~l~--~~~~~~VitvPa~~~------~~qr~a~~~a~-~~---AGl~~~~li~Ep~AAA 150 (509)
T 2v7y_A 83 QYTPQEISAIILQYLKSYAEDYLG--EPVTRAVITVPAYFN------DAQRQATKDAG-RI---AGLEVERIINEPTAAA 150 (509)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHT--SCCCEEEEEECTTCC------HHHHHHHHHHH-HH---TTCEEEEEEEHHHHHH
T ss_pred EEcHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEEECCCCC------HHHHHHHHHHH-HH---cCCCeEEEecCHHHHH
Confidence 2233333333332 232 234679999998764 56677766643 32 8999999999999999
Q ss_pred HhcCC-----CceEEEeecCceeEEEEEee--CeeeccccEEEEeccHHHHHHHHHHHHHhc-----CCCCCc-------
Q 012369 237 YAAKR-----TSGIVVNIGFQVTSVVPILH--GKVMRKVGVEVMGLGALKLTGYLRLLMQQN-----NINFGS------- 297 (465)
Q Consensus 237 ya~g~-----~tglVVDiG~~~T~v~PV~d--G~vl~~~~~~~~~iGG~~lt~~L~~lL~~~-----~~~~~~------- 297 (465)
+++|. .+.+|+|+|+++|+++.+.. |..-..+.....++||.++++.|.+.+.++ +..+..
T Consensus 151 lay~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 230 (509)
T 2v7y_A 151 LAYGLDKEEDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQFKQEHGIDLSKDKMALQR 230 (509)
T ss_dssp HHTTGGGSCSEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCGGGCHHHHHH
T ss_pred HHHhhccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEecCCCCcCHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHH
Confidence 99885 47899999999999996653 543111122345899999999999877653 444321
Q ss_pred -HHHHHHHHHhccccccchHHHhhccccceEEec------CC---cEEEecceecccccccccCCcCCcccCCHHHHHHH
Q 012369 298 -LYTVRTLKEKLCYVAADYKAELSKDTQASLEIA------GE---GWFTLSKERFQTGEILFQPRMADVRTMGLDQAVAL 367 (465)
Q Consensus 298 -~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~lp------d~---~~i~l~~er~~~~E~LF~P~~~~~~~~~L~~~I~~ 367 (465)
...+|.+|+.++.... ..+++| +| ..+.++.++| |-+|+|.+ ..+.+.|.+
T Consensus 231 l~~~aE~~K~~ls~~~~-----------~~i~l~~~~~~~~G~~~~~~~itr~~f---e~l~~~~~-----~~i~~~i~~ 291 (509)
T 2v7y_A 231 LKDAAEKAKKELSGVTQ-----------TQISLPFISANENGPLHLEMTLTRAKF---EELSAHLV-----ERTMGPVRQ 291 (509)
T ss_dssp HHHHHHHHHHHTTTCSE-----------EEEEEEEEEEETTEEEEEEEEEEHHHH---HHHTHHHH-----HTTHHHHHH
T ss_pred HHHHHHHHHHhcCCCCc-----------EEEEEeccccCCCCCeeEEEEEEHHHH---HHHHHHHH-----HHHHHHHHH
Confidence 2567888988875431 122322 22 1234444443 24444432 247788999
Q ss_pred HHhhcCCCCccccccccCceEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 012369 368 CMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (465)
Q Consensus 368 sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (465)
+|+++.. + ....++|+|+||+|++|++.++|++++.. .+..+.+|..++|.||+++|.
T Consensus 292 ~L~~a~~-~----~~~i~~VvLvGG~s~~p~v~~~l~~~f~~----------~~~~~~~p~~aVa~Gaa~~a~ 349 (509)
T 2v7y_A 292 ALQDAGL-T----PADIDKVILVGGSTRIPAVQEAIKRELGK----------EPHKGVNPDEVVAIGAAIQGG 349 (509)
T ss_dssp HHHHHTC-C----GGGCSEEEEESGGGGCHHHHHHHHHHHSS----------CCBCCSCTTTHHHHHHHHHHH
T ss_pred HHHHcCC-C----hhHCcEEEEECCcccChHHHHHHHHHhCC----------CcCcCCCchhhhHhhHHHHHH
Confidence 9998875 2 35568999999999999999999999842 233456678999999999885
No 10
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=99.79 E-value=1.2e-18 Score=177.90 Aligned_cols=219 Identities=14% Similarity=0.131 Sum_probs=150.8
Q ss_pred CCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhcCCC------ceEEEeecCceeEEEE
Q 012369 185 TQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRT------SGIVVNIGFQVTSVVP 258 (465)
Q Consensus 185 ~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~g~~------tglVVDiG~~~T~v~P 258 (465)
...++++.|...+ ...|+.+++.+ +. .|++.+.++++|++|+++++.. +.+|+|+|+++|+++.
T Consensus 135 ~~~~vitvP~~~~------~~~r~~~~~a~-~~---aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lVvD~Gggttdvsv 204 (383)
T 1dkg_D 135 VTEAVITVPAYFN------DAQRQATKDAG-RI---AGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISI 204 (383)
T ss_dssp CCEEEECBCTTCC------HHHHHHHHHHH-HH---TTCEESCCCBHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEE
T ss_pred CCeEEEEECCCCC------HHHHHHHHHHH-HH---cCCceEEEeccHHHHHHHHHhccCCCCcEEEEEEcCCCeEEEEE
Confidence 3568899998664 45676666543 22 8999999999999999988753 6899999999999997
Q ss_pred EeeC------eeeccccEEEEeccHHHHHHHHHHHHHhc-----CCCCCc--------HHHHHHHHHhccccccchHHHh
Q 012369 259 ILHG------KVMRKVGVEVMGLGALKLTGYLRLLMQQN-----NINFGS--------LYTVRTLKEKLCYVAADYKAEL 319 (465)
Q Consensus 259 V~dG------~vl~~~~~~~~~iGG~~lt~~L~~lL~~~-----~~~~~~--------~~~v~~iKe~~c~v~~d~~~e~ 319 (465)
+..+ .....+.....++||+++++.|.+.+.++ +..+.. ...+|++|+.++..... .+
T Consensus 205 ~~~~~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~---~i 281 (383)
T 1dkg_D 205 IEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQT---DV 281 (383)
T ss_dssp EEEEC----CCCEEEEEEEESSCSHHHHHHHHHHHHHHHHHHHHCCCSTTCHHHHHHHHHHHHHHHHHTTSSSEE---EE
T ss_pred EEEEecCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHhCCCCce---EE
Confidence 7654 22111012345899999999999887654 444422 35688899998764311 00
Q ss_pred hccccceEEecCC-c--EEEecceecccccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccCceEEecCCCCc
Q 012369 320 SKDTQASLEIAGE-G--WFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACL 396 (465)
Q Consensus 320 ~~~~~~~~~lpd~-~--~i~l~~er~~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~i 396 (465)
.....++.++| . .+.++.++|. .+|+|.+ ..+.+.|.++|.++.. +.....+|+|+||+|++
T Consensus 282 --~i~~~~~~~~G~~~~~~~it~~~~~---~~~~~~~-----~~i~~~i~~~l~~~~~-----~~~~i~~IvL~GG~s~~ 346 (383)
T 1dkg_D 282 --NLPYITADATGPKHMNIKVTRAKLE---SLVEDLV-----NRSIELLKVALQDAGL-----SVSDIDDVILVGGQTRM 346 (383)
T ss_dssp --EEEEEEEETTEEEEEEEEEEHHHHH---HHSHHHH-----HHHHHHHHHHHHTTTC-----CTTTCCEEEEESGGGGS
T ss_pred --EEecccccCCCCeeEEEEEeHHHHH---HHHHHHH-----HHHHHHHHHHHHHcCC-----CHhhCCEEEEecCcccc
Confidence 00011233344 2 2355544442 3455432 2478888999998864 23456899999999999
Q ss_pred cchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 012369 397 PGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (465)
Q Consensus 397 pGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (465)
||+.++|++++.. ++..+.+|..++|+||+++|.+
T Consensus 347 p~l~~~l~~~~~~----------~v~~~~~p~~ava~Gaa~~a~~ 381 (383)
T 1dkg_D 347 PMVQKKVAEFFGK----------EPRKDVNPDEAVAIGAAVQGGV 381 (383)
T ss_dssp HHHHHHHHHHHSS----------CCBCSSCTTTHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCC----------CCCCCcChHHHHHHHHHHHHHh
Confidence 9999999999852 2344567889999999999874
No 11
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=99.78 E-value=2.3e-18 Score=167.56 Aligned_cols=236 Identities=17% Similarity=0.170 Sum_probs=159.0
Q ss_pred cEEEeCCcceEEEEEecCCC-CCcc--ccc-ccccCCccchHHHHHHHHHHHHHhhcc-c-CCCCCCeEEEecCCCCCCc
Q 012369 127 SVIIDGGSGYCKFGWSKYDC-PSGR--TAT-FLEFGNIESPMYSRLRHFFATIYSRMQ-V-KPSTQPIVVSIPICHYDDT 200 (465)
Q Consensus 127 ~VVID~GS~~~K~Gfage~~-P~~~--~~s-~~~~G~~~~Pi~~~l~~~~~~~~~~L~-v-~~~~~pVll~ep~~~~~~~ 200 (465)
.++||+||.++|+....++. +-.. .++ .+..|-+.. ++.++.+|+++++.+. . ......++++.|....
T Consensus 30 ~~gIDiGS~s~k~vi~~~~~~~l~~~~~~~~~l~~g~i~d--~~~~~~~l~~~~~~~~~~~~~~~~~~v~tvp~~~~--- 104 (272)
T 3h1q_A 30 KVGVDLGTADIVLVVTDQEGIPVAGALKWASVVKDGLVVD--YIGAIQIVRELKAKVERLLGSELFQAATAIPPGTV--- 104 (272)
T ss_dssp EEEEECCSSEEEEEEECTTCCEEEEEEEECCCCBTTBCTT--HHHHHHHHHHHHHHHHHHSSSCCCEEEEECCSCC----
T ss_pred EEEEEcccceEEEEEECCCCcEEEEEeecccccCCCEEEc--HHHHHHHHHHHHHHHHHhcCCccCeEEEEcCCCCC---
Confidence 58999999999999864332 1110 011 011121111 4566666666654321 1 1122345666676432
Q ss_pred cchHHhHHHHHHHHHHHHhh-ccCCeEEEeecchHHHHhcCCCceEEEeecCceeEEEEEeeCeeeccccEEEEeccHHH
Q 012369 201 ENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALK 279 (465)
Q Consensus 201 ~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~g~~tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~ 279 (465)
...|+. . +.++| +|++...+..++.++++++|..+++|||+|+++|.++++.+|.++.. ...++||.+
T Consensus 105 ---~~~~~~-~----~~~~~~~g~~~~~i~~e~~A~a~~~~~~~~~viDiGggst~~~~~~~g~~~~~---~~~~~Gg~~ 173 (272)
T 3h1q_A 105 ---GRNAEA-C----GHVVAGAGLELVTLVDEPVAAARALGINDGIVVDIGGGTTGIAVIEKGKITAT---FDEPTGGTH 173 (272)
T ss_dssp -----CTTH-H----HHHHHHTTCEEEEEECHHHHHHHHHTCSSEEEEEECSSCEEEEEEETTEEEEE---CCBSCCHHH
T ss_pred ---HHHHHH-H----HHHHHHcCCeeeecccHHHHHHHHHcCCCEEEEEECCCcEEEEEEECCEEEEE---ecCCCcHHH
Confidence 233332 2 22444 99999999999999999999999999999999999999999998754 568999999
Q ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHhccccccchHHHhhccccceEEecCCcEEEecceecccccccccCCcCCcccC
Q 012369 280 LTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTM 359 (465)
Q Consensus 280 lt~~L~~lL~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~lpd~~~i~l~~er~~~~E~LF~P~~~~~~~~ 359 (465)
+++.+.+.+.. +.+.++++|++++. . .++. .+.+.++ .
T Consensus 174 ~~~~l~~~l~~------~~~~ae~~k~~~~~--~---~~~~----------------------~~~~~~~---------~ 211 (272)
T 3h1q_A 174 LSLVLAGSYKI------PFEEAETIKKDFSR--H---REIM----------------------RVVRPVI---------E 211 (272)
T ss_dssp HHHHHHHHHTC------CHHHHHHHHHSSTT--H---HHHH----------------------HHHHHHH---------H
T ss_pred HHHHHHHHhCC------CHHHHHHHHHhcCC--H---HHHH----------------------HHHHHHH---------H
Confidence 99999988752 46788999988661 0 0000 0001111 1
Q ss_pred CHHHHHHHHHhhcCCCCccccccccCceEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhh
Q 012369 360 GLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVG 439 (465)
Q Consensus 360 ~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsila 439 (465)
.+.+.|.+++++++ + ..+|+|+||+|++||+.++|++++. .++..+.+|.++.++||+++|
T Consensus 212 ~i~~~i~~~l~~~~--~-------~~~ivL~GG~a~~~~l~~~l~~~l~----------~~v~~~~~p~~a~a~Gaal~a 272 (272)
T 3h1q_A 212 KMALIVKEVIKNYD--Q-------TLPVYVVGGTAYLTGFSEEFSRFLG----------KEVQVPIHPLLVTPLGIALFG 272 (272)
T ss_dssp HHHHHHHHHTTTSC--S-------SCCEEEESGGGGSTTHHHHHHHHHS----------SCCBCCSSGGGHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcC--C-------CCEEEEECCccchhhHHHHHHHHhC----------CCccccCChHHHHHHHHHhcC
Confidence 35666667766665 1 2489999999999999999999994 334456788999999999875
No 12
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=99.74 E-value=4.2e-17 Score=166.84 Aligned_cols=214 Identities=19% Similarity=0.184 Sum_probs=140.7
Q ss_pred CCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhcCCCce------EEEeecCceeEEEE
Q 012369 185 TQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRTSG------IVVNIGFQVTSVVP 258 (465)
Q Consensus 185 ~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~g~~tg------lVVDiG~~~T~v~P 258 (465)
-..++++.|...+ ...|+.+++.+ +. .|++.+.++++|.+|+++++.... +|+|+|+++|+++.
T Consensus 153 ~~~~vitvP~~~~------~~~r~~~~~a~-~~---aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~vlV~D~Gggt~dvsv 222 (394)
T 3qfu_A 153 VTHAVVTVPAYFN------DAQRQATKDAG-TI---AGLNVLRIVNEPTAAAIAYGLDKSDKEHQIIVYDLGGGTFDVSL 222 (394)
T ss_dssp CCEEEEEECTTCC------HHHHHHHHHHH-HH---TTCEEEEEEEHHHHHHHHTTTTSCSSCEEEEEEEECSSCEEEEE
T ss_pred cceEEEEECCCCC------HHHHHHHHHHH-HH---cCCceEEEecCHHHHHHHHhhccCCCCceEEEEEcCCCceeEEE
Confidence 3578999998764 56676665544 32 899999999999999999975443 99999999998876
Q ss_pred Ee--eCeeeccccEEEEeccHHHHHHHHHHHHHh-----cCCCCCc-H-------HHHHHHHHhccccccchHHHhhccc
Q 012369 259 IL--HGKVMRKVGVEVMGLGALKLTGYLRLLMQQ-----NNINFGS-L-------YTVRTLKEKLCYVAADYKAELSKDT 323 (465)
Q Consensus 259 V~--dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~-----~~~~~~~-~-------~~v~~iKe~~c~v~~d~~~e~~~~~ 323 (465)
+- +|..-........++||.++++.|.+.+.. .+..... . ..++.+|+.+....
T Consensus 223 ~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~----------- 291 (394)
T 3qfu_A 223 LSIENGVFEVQATSGDTHLGGEDFDYKIVRQLIKAFKKKHGIDVSDNNKALAKLKREAEKAKRALSSQM----------- 291 (394)
T ss_dssp EEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTCS-----------
T ss_pred EEEeCCEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHHHHHcccCC-----------
Confidence 64 333211111233689999999999887743 2222211 1 34555665543211
Q ss_pred cceEEec---CCcE--EEecceecccccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccCceEEecCCCCccc
Q 012369 324 QASLEIA---GEGW--FTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPG 398 (465)
Q Consensus 324 ~~~~~lp---d~~~--i~l~~er~~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipG 398 (465)
...++++ ++.. +.+..+.| |-++.|. ...+.+.|.++|+++.. + ....++|+|+||+|++||
T Consensus 292 ~~~~~~~~~~~~~~~~~~i~r~~~---~~~~~~~-----~~~i~~~i~~~l~~~~~-~----~~~i~~VvLvGG~s~~p~ 358 (394)
T 3qfu_A 292 STRIEIDSFVDGIDLSETLTRAKF---EELNLDL-----FKKTLKPVEKVLQDSGL-E----KKDVDDIVLVGGSTRIPK 358 (394)
T ss_dssp EEEEEEEEEETTEEEEEEEEHHHH---HHHHHHH-----HHHTHHHHHHHHHHHTC-C----GGGCCEEEEESGGGGSHH
T ss_pred cEEEEEEeccCCceeEEEEEHHHH---HHHHHHH-----HHHHHHHHHHHHHHcCC-C----HHHCCEEEEECCccccHH
Confidence 1112221 2322 33333322 2233332 12467788889988875 3 345689999999999999
Q ss_pred hHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 012369 399 LAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (465)
Q Consensus 399 l~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (465)
+.++|++++.. .++..+.+|..++|.||+++|.+
T Consensus 359 l~~~l~~~~~~---------~~v~~~~~p~~ava~Gaa~~a~~ 392 (394)
T 3qfu_A 359 VQQLLESYFDG---------KKASKGINPDEAVAYGAAVQAGV 392 (394)
T ss_dssp HHHHHHHHTTT---------CCCBCCSCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC---------CCCCCCcCHHHHHHHHHHHHHHh
Confidence 99999998831 34555667889999999999864
No 13
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=99.69 E-value=3e-16 Score=161.31 Aligned_cols=214 Identities=18% Similarity=0.241 Sum_probs=140.1
Q ss_pred CCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhcCCCce---------EEEeecCceeE
Q 012369 185 TQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRTSG---------IVVNIGFQVTS 255 (465)
Q Consensus 185 ~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~g~~tg---------lVVDiG~~~T~ 255 (465)
-..++++.|...+ ...|+.+++.. +. .|++.+.++++|.+|+++++.... +|+|+|+++|+
T Consensus 158 ~~~~vitvPa~~~------~~~r~~~~~a~-~~---AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~d 227 (404)
T 3i33_A 158 VHSAVITVPAYFN------DSQRQATKDAG-TI---TGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFD 227 (404)
T ss_dssp CCEEEEEECTTCC------HHHHHHHHHHH-HH---HTCEEEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEE
T ss_pred CCcEEEEECCCCC------HHHHHHHHHHH-HH---cCCCeEEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEE
Confidence 3468999998764 46676665543 32 899999999999999999875433 99999999999
Q ss_pred EEEEe--eCeeeccccEEEEeccHHHHHHHHHHHHHhc-----CCCCCc--------HHHHHHHHHhccccccchHHHhh
Q 012369 256 VVPIL--HGKVMRKVGVEVMGLGALKLTGYLRLLMQQN-----NINFGS--------LYTVRTLKEKLCYVAADYKAELS 320 (465)
Q Consensus 256 v~PV~--dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~-----~~~~~~--------~~~v~~iKe~~c~v~~d~~~e~~ 320 (465)
++.+- +|.....+.....++||.++++.|.+.+..+ +..+.. ...++++|+.++...
T Consensus 228 vsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~-------- 299 (404)
T 3i33_A 228 VSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSST-------- 299 (404)
T ss_dssp EEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTSS--------
T ss_pred EEEEEEeCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHHHhCCcCc--------
Confidence 98664 3332111122346899999999998877332 333221 135666676654321
Q ss_pred ccccceEEe---cCCcE--EEecceecccccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccCceEEecCCCC
Q 012369 321 KDTQASLEI---AGEGW--FTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSAC 395 (465)
Q Consensus 321 ~~~~~~~~l---pd~~~--i~l~~er~~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ 395 (465)
...+.+ .++.. +.+..+.| |-++.|.. ..+.+.|.++|+++.. + ....++|+|+||+|+
T Consensus 300 ---~~~~~~~~~~~g~~~~~~i~r~~~---~~~~~~~~-----~~i~~~i~~~l~~~~~-~----~~~i~~VvLvGG~s~ 363 (404)
T 3i33_A 300 ---QASIEIDSLYEGVDFYTSITRARF---EELNADLF-----RGTLEPVEKALRDAKL-D----KGQIQEIVLVGGSTR 363 (404)
T ss_dssp ---EEEEEEEEEETTEEEEEEEEHHHH---HHHTHHHH-----HHTHHHHHHHHHHHTC-C----GGGCCEEEEESGGGG
T ss_pred ---ceEEEEeeccCCceeEEEEcHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCC-C----HhhCCEEEEECCccc
Confidence 111221 12322 33333322 22333321 2467788888888765 2 345688999999999
Q ss_pred ccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 012369 396 LPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (465)
Q Consensus 396 ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (465)
+|++.++|++.+.. .++..+.+|..+++.||+++|.+
T Consensus 364 ~p~l~~~l~~~~~~---------~~v~~~~~p~~ava~Gaa~~a~~ 400 (404)
T 3i33_A 364 IPKIQKLLQDFFNG---------KELNKSINPDEAVAYGAAVQAAI 400 (404)
T ss_dssp CHHHHHHHHHHTTT---------CCCBCSSCTTTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCC---------CCCCCCcCHHHHHHHHHHHHHHH
Confidence 99999999988731 23445567789999999999864
No 14
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=99.53 E-value=2.6e-13 Score=146.88 Aligned_cols=212 Identities=15% Similarity=0.152 Sum_probs=140.7
Q ss_pred CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhcCCC------ceEEEeecCceeEEEEE
Q 012369 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRT------SGIVVNIGFQVTSVVPI 259 (465)
Q Consensus 186 ~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~g~~------tglVVDiG~~~T~v~PV 259 (465)
..++++.|.... ...|+.+++.. +. .|+..+.++++|.+|++++|.. +.+|+|+|+++++|+.+
T Consensus 136 ~~~VitVPa~f~------d~qr~a~~~A~-~~---AGl~v~~li~EP~AAAlay~l~~~~~~~~vlV~DlGGGT~Dvsi~ 205 (605)
T 2kho_A 136 TEAVITVPAYFN------DAQRQATKDAG-RI---AGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISII 205 (605)
T ss_dssp CEEEEEECTTCC------HHHHHHHHHHH-HT---TTCEEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEECSSCEEEEEE
T ss_pred cEEEEEECCCCC------HHHHHHHHHHH-HH---cCCceEEEecCHHHHHHHhhhcccCCCCEEEEEECCCCeEEEEEE
Confidence 458889987653 45676665543 22 8999999999999999998743 36999999999999977
Q ss_pred ee------CeeeccccEEEEeccHHHHHHHHHHHHHhc-----CCCCCc--------HHHHHHHHHhccccccchHHHhh
Q 012369 260 LH------GKVMRKVGVEVMGLGALKLTGYLRLLMQQN-----NINFGS--------LYTVRTLKEKLCYVAADYKAELS 320 (465)
Q Consensus 260 ~d------G~vl~~~~~~~~~iGG~~lt~~L~~lL~~~-----~~~~~~--------~~~v~~iKe~~c~v~~d~~~e~~ 320 (465)
.- |..--.+.....++||.++++.|.+.+..+ +..+.. ...+|.+|+.++....
T Consensus 206 ~~~~~~~~g~~~v~a~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~~K~~ls~~~~------- 278 (605)
T 2kho_A 206 EIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQ------- 278 (605)
T ss_dssp EEECTTTSCEEEEEEEEEESSCSGGGTHHHHHHHHHHHHHHHHSCCSTTCHHHHHHHHHHHHHHHHHTTSSSE-------
T ss_pred EEEecCCCCeEEEEEECCCCCccHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHcCCCCc-------
Confidence 64 332111012335799999999998877543 444322 2457778887764321
Q ss_pred ccccceEEec------CC-c--EEEecceecccccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccCceEEec
Q 012369 321 KDTQASLEIA------GE-G--WFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTG 391 (465)
Q Consensus 321 ~~~~~~~~lp------d~-~--~i~l~~er~~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtG 391 (465)
..+++| +| . .+.+..+.| |-++.|.+ ..+.+.|.++|..+.. . ..-...|+|+|
T Consensus 279 ----~~i~l~~~~~~~~G~~~~~~~itr~~f---e~l~~~~~-----~~i~~~i~~~L~~a~~-~----~~~i~~VvLvG 341 (605)
T 2kho_A 279 ----TDVNLPYITADATGPKHMNIKVTRAKL---ESLVEDLV-----NRSIEPLKVALQDAGL-S----VSDIDDVILVG 341 (605)
T ss_dssp ----EEEEEEEEEEETTEEEEEEEEEEHHHH---HTTCCSTT-----GGGTSHHHHHHHTTTC-C----TTTCSEEEEES
T ss_pred ----eEEEecccccCCCCceEEEEEEeHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCC-C----hhhCceEEEEC
Confidence 112222 12 1 123443333 23444432 2366778888887764 2 23458999999
Q ss_pred CCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 012369 392 GSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (465)
Q Consensus 392 G~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (465)
|+|++|++.++|++.+.. .+..+.+|..+++.||++.|..
T Consensus 342 G~srip~v~~~l~~~fg~----------~~~~~~npd~aVA~GAa~~a~~ 381 (605)
T 2kho_A 342 GQTRMPMVQKKVAEFFGK----------EPRKDVNPDEAVAIGAAVQGGV 381 (605)
T ss_dssp GGGGSHHHHHHHHHHHSS----------CCBCSSCTTTHHHHHHHHHHTT
T ss_pred CcccChHHHHHHHHhcCC----------CcCcCCCcchHHHHHHHHHHHH
Confidence 999999999999998842 1233456678999999999863
No 15
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.53 E-value=2.3e-15 Score=146.26 Aligned_cols=61 Identities=25% Similarity=0.603 Sum_probs=58.9
Q ss_pred ccccCCcHHHHHHHHhccChHhhHhhhccchhhhhhccChHHHHHHHhhcCCCCCcceeec
Q 012369 36 GAFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQHQQEPWDSIFFGE 96 (465)
Q Consensus 36 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 96 (465)
|+|+.||.||+++|+++|+|+|+||++.|||+||.+++||.|||+||+||+++|+||+..-
T Consensus 3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~W~si~~~s 63 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKS 63 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGGCCCCCGGG
T ss_pred chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCCCCcccccc
Confidence 7899999999999999999999999999999999999999999999999999999998843
No 16
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=99.51 E-value=6.1e-13 Score=142.53 Aligned_cols=211 Identities=18% Similarity=0.233 Sum_probs=139.6
Q ss_pred CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhcCC-------CceEEEeecCceeEEEE
Q 012369 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-------TSGIVVNIGFQVTSVVP 258 (465)
Q Consensus 186 ~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~g~-------~tglVVDiG~~~T~v~P 258 (465)
..++++.|...+ ...|+.+++.. +. .|++.+.++++|.+|++++|. .+.+|+|+|+++++++.
T Consensus 140 ~~~VitVPa~f~------~~qr~a~~~A~-~~---AGl~~~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv 209 (554)
T 1yuw_A 140 TNAVVTVPAYFN------DSQRQATKDAG-TI---AGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSI 209 (554)
T ss_dssp CEEEEEECTTCC------HHHHHHHHHHH-HT---TTCEEEEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEE
T ss_pred CeEEEEECCCCC------HHHHHHHHHHH-HH---cCCCeEEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEE
Confidence 468999997663 45676655533 32 899999999999999998873 45799999999999997
Q ss_pred Ee--eCee-eccccEEEEeccHHHHHHHHHHHHHh-----cCCCCCc--------HHHHHHHHHhccccccchHHHhhcc
Q 012369 259 IL--HGKV-MRKVGVEVMGLGALKLTGYLRLLMQQ-----NNINFGS--------LYTVRTLKEKLCYVAADYKAELSKD 322 (465)
Q Consensus 259 V~--dG~v-l~~~~~~~~~iGG~~lt~~L~~lL~~-----~~~~~~~--------~~~v~~iKe~~c~v~~d~~~e~~~~ 322 (465)
+. +|.. +.. .....++||+++++.|.+.+.. .+..+.. ...+|.+|+.++....
T Consensus 210 ~~~~~g~~~v~a-~~g~~~lGG~d~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~--------- 279 (554)
T 1yuw_A 210 LTIAAGIFEVKS-TAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQ--------- 279 (554)
T ss_dssp EEEETTEEEEEE-EEEETTCSHHHHHHHHHHHHHHHHHHHTSCCTTSCHHHHHHHHHHHHHHHHHHTTSSE---------
T ss_pred EEEcCCcEEEEE-EeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHhhhcccCce---------
Confidence 76 5654 222 2334589999999998887743 2333321 2457778887664321
Q ss_pred ccceEEec---CCc--EEEecceecccccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccCceEEecCCCCcc
Q 012369 323 TQASLEIA---GEG--WFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLP 397 (465)
Q Consensus 323 ~~~~~~lp---d~~--~i~l~~er~~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ip 397 (465)
..++++ +|. .+.+..+.| |-++.|.+ ..+.+.|.++++.+.. . ..-...|+|+||+|++|
T Consensus 280 --~~i~i~~~~~g~~~~~~ltr~~~---e~l~~~~~-----~~i~~~i~~~L~~a~~-~----~~~i~~VvLvGG~srip 344 (554)
T 1yuw_A 280 --ASIEIDSLYEGIDFYTSITRARF---EELNADLF-----RGTLDPVEKALRDAKL-D----KSQIHDIVLVGGSTRIP 344 (554)
T ss_dssp --EEEEETTCSSSCCEEEEEEHHHH---HHHTHHHH-----HHTTHHHHHHHHHTTC-C----GGGCCEEEEESGGGGCH
T ss_pred --EEEEEeeccCCceEEEEEEHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCC-C----hhhCcEEEEECCcccCh
Confidence 123332 232 233333332 12333211 1245677778877654 2 34458999999999999
Q ss_pred chHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 012369 398 GLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (465)
Q Consensus 398 Gl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (465)
++.++|++.+.. .++..+.+|..+++.||++.|.
T Consensus 345 ~v~~~l~~~f~~---------~~v~~~~np~~aVA~Gaa~~a~ 378 (554)
T 1yuw_A 345 KIQKLLQDFFNG---------KELNKSINPDEAVAYGAAVQAA 378 (554)
T ss_dssp HHHHHHHHHTTT---------CCCBCCSCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC---------CccccCCCchhHHHHHHHHHHH
Confidence 999999988742 1233455678899999999885
No 17
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=99.45 E-value=2.1e-12 Score=141.16 Aligned_cols=210 Identities=15% Similarity=0.193 Sum_probs=138.7
Q ss_pred CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhcCC------------CceEEEeecCce
Q 012369 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR------------TSGIVVNIGFQV 253 (465)
Q Consensus 186 ~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~g~------------~tglVVDiG~~~ 253 (465)
..++++.|.... ...|+.+++.. +. .|++.+.++++|.+|++++|. .+.+|+|+|+++
T Consensus 139 ~~~VITVPa~f~------~~qR~a~~~Aa-~~---AGl~~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT 208 (675)
T 3d2f_A 139 TDVCIAVPPWYT------EEQRYNIADAA-RI---AGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSS 208 (675)
T ss_dssp CEEEEEECTTCC------HHHHHHHHHHH-HH---TTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSC
T ss_pred ceEEEEECCCCC------HHHHHHHHHHH-HH---cCCceEEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCc
Confidence 458999987663 46677666544 33 899999999999999988752 347999999999
Q ss_pred eEEEEEe--eCee-eccccEEEEeccHHHHHHHHHHHHHh-----cCCCCCc--------HHHHHHHHHhccccccchHH
Q 012369 254 TSVVPIL--HGKV-MRKVGVEVMGLGALKLTGYLRLLMQQ-----NNINFGS--------LYTVRTLKEKLCYVAADYKA 317 (465)
Q Consensus 254 T~v~PV~--dG~v-l~~~~~~~~~iGG~~lt~~L~~lL~~-----~~~~~~~--------~~~v~~iKe~~c~v~~d~~~ 317 (465)
++|+.+- +|.. +.. ......+||+++++.|.+.+.. .+..+.. ...++.+|+.++...
T Consensus 209 ~Dvsv~~~~~g~~~V~a-~~gd~~lGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~rL~~~aE~aK~~Ls~~~----- 282 (675)
T 3d2f_A 209 YTCSIMAFKKGQLKVLG-TACDKHFGGRDFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANT----- 282 (675)
T ss_dssp EEEEEEEEETTEEEEEE-EEEETTCSHHHHHHHHHHHHHHHHHHHTSCCGGGCHHHHHHHHHHHHHHHHHHHHCS-----
T ss_pred EEEEEEEecCCeEEEEE-EcCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhcCcCC-----
Confidence 9998775 5654 222 2234589999999999887743 2333321 245777887765321
Q ss_pred HhhccccceEEec---CCc--EEEecceecccccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccCceEEecC
Q 012369 318 ELSKDTQASLEIA---GEG--WFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGG 392 (465)
Q Consensus 318 e~~~~~~~~~~lp---d~~--~i~l~~er~~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG 392 (465)
...++++ +|. .+.+..+.| |-++.|.+ ..+.+.|.++|..+.. . ..-...|+|+||
T Consensus 283 ------~~~i~i~~~~~g~~~~~~itr~~f---e~l~~~l~-----~~i~~~i~~~L~~a~l-~----~~~I~~VvLvGG 343 (675)
T 3d2f_A 283 ------NAPFSVESVMNDVDVSSQLSREEL---EELVKPLL-----ERVTEPVTKALAQAKL-S----AEEVDFVEIIGG 343 (675)
T ss_dssp ------EEEEEETTSSSSCCEEEEEEHHHH---HHHTHHHH-----TTTTHHHHHHHHHHTC-C----GGGCCEEEEESG
T ss_pred ------ceEEEEeeeccCceEEEEEeHHHH---HHHHHHHH-----HHHHHHHHHHHHHhCC-C----hhhCcEEEEECC
Confidence 1122222 122 234443332 12223221 2356677788877654 2 223478999999
Q ss_pred CCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 012369 393 SACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (465)
Q Consensus 393 ~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (465)
+|++|++.++|++.+. ..+..+.+|..++..||++.|.
T Consensus 344 ssriP~v~~~l~~~fg----------~~~~~~~nPdeaVA~GAa~~a~ 381 (675)
T 3d2f_A 344 TTRIPTLKQSISEAFG----------KPLSTTLNQDEAIAKGAAFICA 381 (675)
T ss_dssp GGGSHHHHHHHHHHHT----------SCEECCSCTTTHHHHHHHHHHH
T ss_pred CccChHHHHHHHHhcC----------CCccccCCcchHHHHHHHHHHH
Confidence 9999999999998884 1234456678899999999875
No 18
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=99.41 E-value=5.1e-12 Score=129.99 Aligned_cols=216 Identities=16% Similarity=0.180 Sum_probs=136.7
Q ss_pred CCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhcCCC--------ceEEEeecCceeEE
Q 012369 185 TQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRT--------SGIVVNIGFQVTSV 256 (465)
Q Consensus 185 ~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~g~~--------tglVVDiG~~~T~v 256 (465)
...++++.|.... ...|+.+++.+-. .|+..+.++++|.+|+++++.. +.+|+|+|+++|++
T Consensus 150 ~~~~vitvPa~~~------~~~r~~~~~a~~~----AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~vlv~D~GgGT~dv 219 (409)
T 4gni_A 150 VTSAVITIPTNFT------EKQKAALIAAAAA----ADLEVLQLISEPAAAVLAYDARPEATISDKIIVVADLGGSRSDV 219 (409)
T ss_dssp CCEEEEEECTTCC------HHHHHHHHHHHHH----TTCEEEEEEEHHHHHHHHTTC------CCEEEEEEEECSSCEEE
T ss_pred CCeEEEEECCCCC------HHHHHHHHHHHHH----cCCCeEEEEcCHHHHHHHHhcccccCCCCCEEEEEECCCCceEE
Confidence 3568999988653 4566666554443 8999999999999999999864 47999999999999
Q ss_pred EEEe-eCeeeccc-cEEEEeccHHHHHHHHHHHHHhc-----C--CCCC-c-------HHHHHHHHHhccccccchHHHh
Q 012369 257 VPIL-HGKVMRKV-GVEVMGLGALKLTGYLRLLMQQN-----N--INFG-S-------LYTVRTLKEKLCYVAADYKAEL 319 (465)
Q Consensus 257 ~PV~-dG~vl~~~-~~~~~~iGG~~lt~~L~~lL~~~-----~--~~~~-~-------~~~v~~iKe~~c~v~~d~~~e~ 319 (465)
+-+. .+..+... .....++||.++++.|.+.+..+ + .... . ...++.+|+.+...
T Consensus 220 sv~~~~~~~~~v~~~~~~~~lGG~~~d~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~-------- 291 (409)
T 4gni_A 220 TVLASRSGMYTILATVHDYEYHGIALDKVLIDHFSKEFLKKNPGAKDPRENPRSLAKLRLEAESTKRALSRS-------- 291 (409)
T ss_dssp EEEEEETTEEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHSTTCCCGGGSHHHHHHHHHHHHHHHHHHHHS--------
T ss_pred EEEEEeCCeEEEEEecCCCCcCHHHHHHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHhCCCC--------
Confidence 8752 22221110 11236899999999998877542 1 1111 1 12456666654311
Q ss_pred hccccceEEec---CCc--EEEecceecccccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccCceEEecCCC
Q 012369 320 SKDTQASLEIA---GEG--WFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSA 394 (465)
Q Consensus 320 ~~~~~~~~~lp---d~~--~i~l~~er~~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S 394 (465)
....+.++ ++. .+.+..+.| |-++.|.+ ..+.++|.++|++... . ..-.+.|+|+||+|
T Consensus 292 ---~~~~i~i~~~~~~~~~~~~itr~~~---~~~~~~~~-----~~i~~~i~~~l~~~~~-~----~~~i~~V~LvGG~s 355 (409)
T 4gni_A 292 ---TNASFSVESLIDGLDFASTINRLRY---ETIARTVF-----EGFNRLVESAVKKAGL-D----PLDVDEVIMSGGTS 355 (409)
T ss_dssp ---SEEEEEEEEEETTEEEEEEEEHHHH---HHHTHHHH-----HHHHHHHHHHHHHTTC-C----GGGCCEEEEESGGG
T ss_pred ---CceEEEeecccCCcceEEEeeHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCC-C----HHHCCEEEEECCcc
Confidence 11122222 222 223332222 22333321 2467778888887654 2 34458899999999
Q ss_pred CccchHHHHHHHHHhcCCCCCCCceEE------eCCCCCcchhhhhhHHhhcCC
Q 012369 395 CLPGLAERLEKELRGLLPSSISNGIRV------IPPPYGADTAWFGAKLVGNLS 442 (465)
Q Consensus 395 ~ipGl~eRL~~EL~~l~p~~~~~~v~v------~~~~~~~~~aW~Ggsilasl~ 442 (465)
++|++.++|++.+.. .++| ....+|..++=.||++.+...
T Consensus 356 ~~p~v~~~l~~~f~~--------~~~v~~P~~~~~~~~p~~ava~GAa~~~~~~ 401 (409)
T 4gni_A 356 NTPRIAANFRYIFPE--------STRILAPSTDPSALNPSELQARGAALQASLI 401 (409)
T ss_dssp GCHHHHHHHHHHSCT--------TSEEESTTTCTTCCCTTTHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHcCC--------ccccccccccCCCcCHHHHHHHHHHHHhhhh
Confidence 999999999988742 1455 234467889999999998763
No 19
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=99.24 E-value=1.5e-10 Score=125.24 Aligned_cols=211 Identities=15% Similarity=0.153 Sum_probs=130.9
Q ss_pred CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhcCC------CceEEEeecCceeEEEEE
Q 012369 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR------TSGIVVNIGFQVTSVVPI 259 (465)
Q Consensus 186 ~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~g~------~tglVVDiG~~~T~v~PV 259 (465)
..++++.|.... ...|+.+++.... .|++.+.++++|.+|++++|. .+-+|+|+|+++++++-+
T Consensus 136 ~~~VITVPa~f~------~~qr~a~~~Aa~~----AGl~v~~li~EP~AAAlaygl~~~~~~~~vlV~DlGGGT~Dvsi~ 205 (605)
T 4b9q_A 136 TEAVITVPAYFN------DAQRQATKDAGRI----AGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGAFDISII 205 (605)
T ss_dssp CEEEEEECTTCC------HHHHHHHHHHHHH----TTCEEEEEEEHHHHHHHHHHTTSCCSSEEEEEEEECSSCEEEEEE
T ss_pred CeEEEEECCCCC------HHHHHHHHHHHHH----cCCceEEEeCcHHHHHHHhhhhccCCCCEEEEEECCCCeEEEEEE
Confidence 357899887653 4567666554433 899999999999999999874 345899999999999976
Q ss_pred eeCe----e-ecc-ccEEEEeccHHHHHHHHHHHHHh-----cCCCCC-c-------HHHHHHHHHhccccccchHHHhh
Q 012369 260 LHGK----V-MRK-VGVEVMGLGALKLTGYLRLLMQQ-----NNINFG-S-------LYTVRTLKEKLCYVAADYKAELS 320 (465)
Q Consensus 260 ~dG~----v-l~~-~~~~~~~iGG~~lt~~L~~lL~~-----~~~~~~-~-------~~~v~~iKe~~c~v~~d~~~e~~ 320 (465)
--+. . +.- +......+||.++++.|.+.+.. .+.... + ...++.+|+.+.....
T Consensus 206 ~~~~~~~~~~~evla~~gd~~lGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~~~~~L~~~aE~~K~~Ls~~~~------- 278 (605)
T 4b9q_A 206 EIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQ------- 278 (605)
T ss_dssp EEEESSSCEEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHTCCCGGGCHHHHHHHHHHHHHHHHHTTTCSE-------
T ss_pred EEecCCCCceEEEEEecCCCCcChHHHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHhcCcCCC-------
Confidence 5443 1 111 01123468999999998877753 233221 1 2346667766543211
Q ss_pred ccccceEEec----C--C-c--EEEecceecccccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccCceEEec
Q 012369 321 KDTQASLEIA----G--E-G--WFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTG 391 (465)
Q Consensus 321 ~~~~~~~~lp----d--~-~--~i~l~~er~~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtG 391 (465)
..+++| + | . .+.+..+.| |-++.|.+ ..+.+.|.+++..... + ..-...|+|+|
T Consensus 279 ----~~i~~~~~~~~~~g~~~~~~~itr~~~---e~l~~~~~-----~~i~~~v~~~L~~a~~-~----~~~i~~VvLvG 341 (605)
T 4b9q_A 279 ----TDVNLPYITADATGPKHMNIKVTRAKL---ESLVEDLV-----NRSIEPLKVALQDAGL-S----VSDIDDVILVG 341 (605)
T ss_dssp ----EEEEEEEEEECSSSEEEEEEEEEHHHH---HHHHHHHH-----HHTTHHHHHHHHHTTC-C----GGGCSEEEEES
T ss_pred ----eEEEEeeeccCCCCCeeEEEEEeHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCC-C----HHHCcEEEEeC
Confidence 111211 1 1 1 223332221 12222211 1245667777776654 2 23447899999
Q ss_pred CCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 012369 392 GSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (465)
Q Consensus 392 G~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (465)
|+|++|++.++|++.+.. .+..+.+|..++=.||++.|.
T Consensus 342 G~sriP~v~~~l~~~fg~----------~~~~~~nPdeaVA~GAai~a~ 380 (605)
T 4b9q_A 342 GQTRMPMVQKKVAEFFGK----------EPRKDVNPDEAVAIGAAVQGG 380 (605)
T ss_dssp GGGGSHHHHHHHHHHHTS----------CCCSSSCTTTHHHHHHHHHHH
T ss_pred CccCchHHHHHHHHHhcc----------CcCCCcChhHHHHHhHHHHHH
Confidence 999999999999988842 122334566788889998875
No 20
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=99.15 E-value=7.5e-11 Score=119.80 Aligned_cols=162 Identities=21% Similarity=0.242 Sum_probs=104.2
Q ss_pred ccCCeEEEeecchHHHHhcC------CCc-eEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhcCC
Q 012369 221 LNVPAVCAINQATLALYAAK------RTS-GIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNI 293 (465)
Q Consensus 221 ~~vpav~~~~~~vlalya~g------~~t-glVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~~ 293 (465)
.|+.-..+..+++++++++| ... .+|||+|+++|+++.+.+|.+... ...++||.++|+.+.+.+ +.
T Consensus 163 aGl~~~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~~g~~~~~---~~~~~GG~~i~~~i~~~~---~~ 236 (377)
T 2ych_A 163 AGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPLAV---RVLTLSGKDFTEAIARSF---NL 236 (377)
T ss_dssp TTCEEEEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEETTEEEEE---EEESCSHHHHHHHHHHHT---TC
T ss_pred CCCceEEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEECCEEEEE---EeeechHHHHHHHHHHHh---CC
Confidence 89999999999999988864 233 599999999999999999998754 678999999999988733 22
Q ss_pred CCCcHHHHHHHHHhccccccchHHHhhccccceEEecCCcEEEecceecccccccccCCcCCcccCCHHHHHHHHHhhcC
Q 012369 294 NFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCH 373 (465)
Q Consensus 294 ~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~lpd~~~i~l~~er~~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~ 373 (465)
+...+|++|+++++...+..++ ...+++++ ..+.++.+. ..|++ +|. ...+.+.|.++++.+.
T Consensus 237 ---~~~~aE~~K~~~~~~~~~~~~~-----~~~i~~~~-~~~~i~~~~--~~~~i-~~~-----~~~i~~~i~~~l~~~~ 299 (377)
T 2ych_A 237 ---DLLAAEEVKRTYGMATLPTEDE-----ELLLDFDA-ERERYSPGR--IYDAI-RPV-----LVELTQELRRSLEFFR 299 (377)
T ss_dssp ---CHHHHHHHHHHTC-------------------------------C--HHHHH-HHH-----HHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHhhccccccccccc-----cccccccc-ccccCCHHH--HHHHH-HHH-----HHHHHHHHHHHHHHHH
Confidence 3678999999988765432111 01123332 222222221 11111 221 1236677777777654
Q ss_pred CCCccccccccCceEEecCCCCccchHHHHHHHHH
Q 012369 374 YAELSGDDAWFKTVILTGGSACLPGLAERLEKELR 408 (465)
Q Consensus 374 ~~dl~~r~~l~~NIvLtGG~S~ipGl~eRL~~EL~ 408 (465)
. .. +....++|+|+||+|++||+.++|++++.
T Consensus 300 ~-~~--~~~~~~~IvL~GG~s~~p~l~~~l~~~l~ 331 (377)
T 2ych_A 300 I-QL--EEASPEVGYLLGGGSKLRGLASLLTDTLG 331 (377)
T ss_dssp H-HC-----CCSEEEEESGGGGSTTHHHHHHHHHT
T ss_pred h-cc--CCCCcCEEEEECccccchhHHHHHHHHhC
Confidence 3 22 34577899999999999999999999995
No 21
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=99.08 E-value=1.1e-09 Score=113.38 Aligned_cols=188 Identities=14% Similarity=0.111 Sum_probs=122.5
Q ss_pred ccCCeEEEeecchHHHHhcCC-----CceEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhcCCCC
Q 012369 221 LNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINF 295 (465)
Q Consensus 221 ~~vpav~~~~~~vlalya~g~-----~tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~ 295 (465)
.|..-..++.+|+++++++.. .+.+|||+|+++|+++.+.+|.+... ...++||+++|+.+.+.+..
T Consensus 180 AGL~v~~lv~ep~Aaa~a~l~~~~~~~gv~vvDiGggttdisi~~~g~~~~~---~~i~~GG~~it~dIa~~l~~----- 251 (419)
T 4a2a_A 180 TVKSPFQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYKNGVPIKI---SYVPVGMKHVIKDVSAVLDT----- 251 (419)
T ss_dssp TSCSCEEEEEHHHHHHHHHCCHHHHHHCEEEEEECSSSEEEEEEETTEEEEE---EEESCCHHHHHHHHHHHHTC-----
T ss_pred cCCcEEEEEEHHHHHHHHhhccccccCCEEEEEECCCcEEEEEEECCEEEEE---EecccHHHHHHHHHHHHHCC-----
Confidence 888888999999999998864 35799999999999999999998764 56899999999999876643
Q ss_pred CcHHHHHHHHHhccccccchHHHhhccccceEEecCC---cEEEecceecccccccccCCcCCcccCCHHHHHHHHHhhc
Q 012369 296 GSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGE---GWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHC 372 (465)
Q Consensus 296 ~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~lpd~---~~i~l~~er~~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~ 372 (465)
+.+.+|.+|.+++....+. .....+++|.. ....++.+ ...|++ +|. -..+.+.|.+.|+..
T Consensus 252 -~~~~AE~iK~~~g~a~~~~------~~~~~i~v~~~~~~~~~~is~~--~l~~ii-~p~-----veei~~~V~~~L~~~ 316 (419)
T 4a2a_A 252 -SFEESERLIITHGNAVYND------LKEEEIQYRGLDGNTIKTTTAK--KLSVII-HAR-----LREIMSKSKKFFREV 316 (419)
T ss_dssp -CHHHHHHHHHHHCCSCCTT------CCCCEEEEECTTSCSEEEEEHH--HHHHHH-HHH-----HHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHhccCcccC------CCCceEEEeecCCccceEEcHH--HHHHHH-HHH-----HHHHHHHHHHHHHHc
Confidence 4689999999877543221 11123344321 11222211 111111 111 123566777777776
Q ss_pred CCC--CccccccccCceEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeC-----C----------CCCcchhhhhh
Q 012369 373 HYA--ELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIP-----P----------PYGADTAWFGA 435 (465)
Q Consensus 373 ~~~--dl~~r~~l~~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~-----~----------~~~~~~aW~Gg 435 (465)
... +.. .....+.|+||||+|++||+.+.+++.+..- +++-. | .+|.|++=+|-
T Consensus 317 ~~~~p~~~-~~~~~~~IvLtGG~s~lpgl~e~~~~~~g~~--------vri~~~~~~~p~~~~~~~~~~~~P~~~t~~Gl 387 (419)
T 4a2a_A 317 EAKIVEEG-EIGIPGGVVLTGGGAKIPRINELATEVFKSP--------VRTGCYANSDRPSIINADEVANDPSFAAAFGN 387 (419)
T ss_dssp TTCC---------TTCEEEESGGGGSTTHHHHHHHHHTSC--------EEECCGGGSSSCCCBTCHHHHTCGGGHHHHHT
T ss_pred CCCccccc-ccccCCEEEEECchhchhhHHHHHHHHHCCC--------eEEEecCCCCchhccCcccccCCchHHHHHHH
Confidence 530 111 1356788999999999999999999998531 33333 2 24678887886
Q ss_pred HHhhc
Q 012369 436 KLVGN 440 (465)
Q Consensus 436 silas 440 (465)
.+++.
T Consensus 388 ~~~~~ 392 (419)
T 4a2a_A 388 VFAVS 392 (419)
T ss_dssp TCC--
T ss_pred HHHHh
Confidence 66654
No 22
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=98.95 E-value=2.9e-09 Score=107.34 Aligned_cols=99 Identities=14% Similarity=0.165 Sum_probs=70.3
Q ss_pred CCeE--EEecCCCCCCccchHHhHHHHHHHHHHHH--hh--------ccCCeEEEeecchHHHHhc--CC------CceE
Q 012369 186 QPIV--VSIPICHYDDTENAKASRRQLKDCFQQVL--FD--------LNVPAVCAINQATLALYAA--KR------TSGI 245 (465)
Q Consensus 186 ~pVl--l~ep~~~~~~~~~~~~~R~~~~e~l~e~l--FE--------~~vpav~~~~~~vlalya~--g~------~tgl 245 (465)
..++ ++.|... ....|+.+++.+.... ++ +++..+.++++|.+|++++ +. .+.+
T Consensus 120 ~~vvL~i~vP~~~------~~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v~li~Ep~AAa~~~l~~~~~~~~~~~vl 193 (346)
T 2fsj_A 120 VDLVIGSGTPLGT------FDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAALYLLNQGIIEQQPGYGV 193 (346)
T ss_dssp EEEEEEEEECGGG------HHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETTHHHHHHHHHHTSSCCCSSEEE
T ss_pred eEEEEcccCCHHH------HHHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEEEEEccHHHHHHHhhccccccccCCcEE
Confidence 3478 7888643 2446666666543310 00 1356799999999999985 31 3349
Q ss_pred EEeecCceeEEEEEe--eCeeeccccEEEEeccHHHHHHHHHHHHHhc
Q 012369 246 VVNIGFQVTSVVPIL--HGKVMRKVGVEVMGLGALKLTGYLRLLMQQN 291 (465)
Q Consensus 246 VVDiG~~~T~v~PV~--dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~ 291 (465)
|||+|+++|+++-+. +|..+.. .....++||+++++.+.+.++++
T Consensus 194 VvDIGgGTtDv~vi~~~~g~~v~~-~s~~~~lGg~~i~~~I~~~i~~~ 240 (346)
T 2fsj_A 194 VIDVGSRTTDVLTINLMDMEPVVE-LSFSLQIGVGDAISALSRKIAKE 240 (346)
T ss_dssp EEEECSSCEEEEEEETTTTEECGG-GCEEESCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCcEEEEEEEecCCEEEee-cCCCcchhHHHHHHHHHHHHHHH
Confidence 999999999999887 6775554 45778999999999998877653
No 23
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A
Probab=98.84 E-value=9.1e-09 Score=102.34 Aligned_cols=85 Identities=13% Similarity=0.132 Sum_probs=65.6
Q ss_pred ccCCeEEEeecchHHHHhcC-----CCceEEEeecCceeEEEEEeeCee-eccccEEEEeccHHHHHHHHHHHHHhcCCC
Q 012369 221 LNVPAVCAINQATLALYAAK-----RTSGIVVNIGFQVTSVVPILHGKV-MRKVGVEVMGLGALKLTGYLRLLMQQNNIN 294 (465)
Q Consensus 221 ~~vpav~~~~~~vlalya~g-----~~tglVVDiG~~~T~v~PV~dG~v-l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~ 294 (465)
+++..+.+++++++|+++.+ ..+.+|||+|+++|+++.+.+|.+ +.. .....++||.++++.+.+.+.+++..
T Consensus 138 ~~i~~v~~~~e~~aa~~~~~~~~~~~~~~~vvDiGggttd~~v~~~g~~~v~~-~~~~~~lGg~~~~~~I~~~l~~~~~~ 216 (320)
T 2zgy_A 138 FTIKDVKVMPESIPAGYEVLQELDELDSLLIIDLGGTTLDISQVMGKLSGISK-IYGDSSLGVSLVTSAVKDALSLARTK 216 (320)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHSCTTCEEEEEEECSSCEEEEEEEGGGCCEEE-EEEECSCCTHHHHHHHHHHTTCCSBG
T ss_pred EEEEEEEEecCcHHHHHhhhccccCCCCEEEEEcCCCeEEEEEEeCCeeEEee-ecCCccccHHHHHHHHHHHHHHcCCC
Confidence 56678999999999998864 346799999999999999988875 443 23566999999999999988765433
Q ss_pred CCcHHHHHHH-HHh
Q 012369 295 FGSLYTVRTL-KEK 307 (465)
Q Consensus 295 ~~~~~~v~~i-Ke~ 307 (465)
+ +...++++ |.+
T Consensus 217 i-~~~~ae~~lk~~ 229 (320)
T 2zgy_A 217 G-SSYLADDIIIHR 229 (320)
T ss_dssp G-GHHHHHHHHHTT
T ss_pred C-CHHHHHHHHHHh
Confidence 3 34567776 554
No 24
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.75 E-value=3.6e-09 Score=76.74 Aligned_cols=46 Identities=30% Similarity=0.519 Sum_probs=40.6
Q ss_pred ccccCCcHHHHHHHHhccChHhhHhhhccchhhhhhccChHHHHHH
Q 012369 36 GAFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFF 81 (465)
Q Consensus 36 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 81 (465)
..++.||.|++.+|+++|++.|++|++.|||.|+.++.|+.||+.+
T Consensus 7 ~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l 52 (53)
T 1fs1_A 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (53)
T ss_dssp --CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred CCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence 4689999999999999999999999999999999999999999975
No 25
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Probab=98.55 E-value=6.2e-08 Score=96.89 Aligned_cols=68 Identities=9% Similarity=0.009 Sum_probs=57.8
Q ss_pred cCCeEEEeecchHHHHhcC----CCceEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHh
Q 012369 222 NVPAVCAINQATLALYAAK----RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQ 290 (465)
Q Consensus 222 ~vpav~~~~~~vlalya~g----~~tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~ 290 (465)
.+..+.+.++++.++|... ..+.+|||+|+++|+++.+.+|.+... .....++||.++++.+.+.+++
T Consensus 148 ~I~~v~v~pe~~ga~~~~~~~~~~~~v~vvDiGggTtd~~v~~~g~~~~~-~~~~~~~G~~~~~~~i~~~l~~ 219 (329)
T 4apw_A 148 EITDITIKAEGSGVLFLEQENFKNKNVAVIDFGGLNMGFSLYRNCVVNPS-ERFIEEHGVKDLIIRVGDALTD 219 (329)
T ss_dssp EEEEEEEEEHHHHHHHHSCCCCTTCEEEEEEECSSCEEEEEEETTEECGG-GCEEESCCHHHHHHHHHTSSSS
T ss_pred EEeEEEEEeccHHHHhhcchhhccCCEEEEEeCCCcEEEEEEECCEEeec-cccchhhHHHHHHHHHHHHHHh
Confidence 3567999999999999862 356699999999999999999998765 4567899999999999887766
No 26
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}
Probab=98.54 E-value=9.1e-08 Score=96.70 Aligned_cols=168 Identities=15% Similarity=0.137 Sum_probs=99.5
Q ss_pred CCeEEEeecchHHHHhcC-----------CCceEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhc
Q 012369 223 VPAVCAINQATLALYAAK-----------RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQN 291 (465)
Q Consensus 223 vpav~~~~~~vlalya~g-----------~~tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~ 291 (465)
+..+.+++++++|+++.+ ..+.+|||+|+++|+++.+.+|.+... ....+++||..+++.+.+.++++
T Consensus 154 I~~V~v~pE~~~a~~~~~~~~~~~~~~~~~~~~~vvDiGggTtd~~v~~~~~~~~~-~s~s~~~G~~~~~~~i~~~l~~~ 232 (355)
T 3js6_A 154 VKGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDTYQNMKRVEE-ESFVINKGTIDFYKRIASHVSKK 232 (355)
T ss_dssp EEEEEEEEHHHHHHHHTTEETTEECHHHHTCEEEEEEECSSCEEEEEEETTEECGG-GCEEESCCHHHHHHHHHHHTC--
T ss_pred EEEEEEEeCcHHHHHHHHHccCccccccccCcEEEEEeCCCcEEEEEEcCCEEccc-cccCcchHHHHHHHHHHHHHHHh
Confidence 478999999999999975 345689999999999999988888766 56788999999999999998875
Q ss_pred C--CCCCcHHHHHHHHHhccccccchHHHhhccccceEEecCCcEEEecceecccccccccCCcCCcccCCHHHHHHHHH
Q 012369 292 N--INFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCM 369 (465)
Q Consensus 292 ~--~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~lpd~~~i~l~~er~~~~E~LF~P~~~~~~~~~L~~~I~~sI 369 (465)
. ..+. . +.|++..-|.. +....++.+++.+....+-+ .+.+.|.+.|
T Consensus 233 ~~g~~l~-~---~~i~~g~~~~~--------------~~~~~~k~~di~~~i~~a~~-------------~~~~~I~~~i 281 (355)
T 3js6_A 233 SEGASIT-P---RMIEKGLEYKQ--------------CKLNQKTVIDFKDEFYKEQD-------------SLIEEVMSNF 281 (355)
T ss_dssp ------C-H---HHHHSCCC---------------------------CHHHHHHHHH-------------HHHHHHHHHH
T ss_pred cCCCcCC-H---HHHhcCCcccc--------------ccccccccccHHHHHHHHHH-------------HHHHHHHHHH
Confidence 2 2222 1 12221111100 00000122222221100010 1333444444
Q ss_pred hhcCCCCccccccccCceEEecCCCCccc--hHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 012369 370 DHCHYAELSGDDAWFKTVILTGGSACLPG--LAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (465)
Q Consensus 370 ~~~~~~dl~~r~~l~~NIvLtGG~S~ipG--l~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (465)
++.-. + ...+.+|+|+||+|.++| +.+.|++++ |. . ++|.++.=.|..+++..
T Consensus 282 ~~~l~-~----~~~~~~Ivl~GGGa~l~~~~l~~~i~~~~----~~--------~--~~p~~anA~G~~~~~~~ 336 (355)
T 3js6_A 282 EITVG-N----INSIDRIIVTGGGANIHFDSLSHYYSDVF----EK--------A--DDSQFSNVRGYEKLGEL 336 (355)
T ss_dssp HHHTC-C----TTSCSEEEEESTTHHHHHHHHHHHSSSCE----EC--------C--SSGGGHHHHHHHHHHHH
T ss_pred HHHhh-c----hhhccEEEEECcchhcchhhHHHHHHHHC----CC--------C--CCcHHHHHHHHHHHHHH
Confidence 44322 2 133488999999999887 655555432 11 1 67789999998887763
No 27
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6
Probab=98.25 E-value=7.1e-06 Score=85.77 Aligned_cols=74 Identities=9% Similarity=0.051 Sum_probs=59.7
Q ss_pred ecchHHHHhcC----C-CceEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 012369 230 NQATLALYAAK----R-TSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYTVRTL 304 (465)
Q Consensus 230 ~~~vlalya~g----~-~tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~~~~~v~~i 304 (465)
-++.+|.+++= + .-.++||+|+++|++.-+.+|..+.. ..+++||+++|..+..-|.- ++.+.+|+|
T Consensus 392 ~ep~AA~laaLTedE~elGvaiIDmGgGTTd~sVf~~g~lv~a---~~ip~gG~~VT~DIA~~Lg~-----~d~~~AErI 463 (607)
T 1nbw_A 392 VEANMAIAGALTTPGCAAPLAILDLGAGSTDAAIVNAEGQITA---VHLAGAGNMVSLLIKTELGL-----EDLSLAEAI 463 (607)
T ss_dssp CHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECSSSCEEE---EEEECCHHHHHHHHHHHHTC-----SCHHHHHHH
T ss_pred ccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEEEE---EEeccchHHHHHHHHHHhCC-----CCHHHHHHh
Confidence 66777777773 2 34589999999999999999998765 66899999999999988764 237899999
Q ss_pred HHhccccc
Q 012369 305 KEKLCYVA 312 (465)
Q Consensus 305 Ke~~c~v~ 312 (465)
|. ++...
T Consensus 464 K~-YG~A~ 470 (607)
T 1nbw_A 464 KK-YPLAK 470 (607)
T ss_dssp HH-SCEEE
T ss_pred cc-cCcee
Confidence 99 66543
No 28
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.23 E-value=8.6e-07 Score=86.87 Aligned_cols=51 Identities=20% Similarity=0.458 Sum_probs=48.9
Q ss_pred cccccCCcHHHHHHHHhccChHhhH-hhhccchhhhhhccChHHHHHHHhhc
Q 012369 35 LGAFDQIPWDVLIQIVKLIGPKEAA-KLCVVSKSWRALVSDNRLWIFFLQHQ 85 (465)
Q Consensus 35 ~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~w~~~~~~~ 85 (465)
+..++.||.|++..|+++|.|.+++ |..+|||.||.+++|+.||+..++++
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~ 99 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE 99 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence 4678999999999999999999999 99999999999999999999999986
No 29
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A
Probab=98.21 E-value=6.6e-06 Score=85.76 Aligned_cols=74 Identities=12% Similarity=0.037 Sum_probs=59.9
Q ss_pred ecchHHHHhcC----C-CceEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 012369 230 NQATLALYAAK----R-TSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYTVRTL 304 (465)
Q Consensus 230 ~~~vlalya~g----~-~tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~~~~~v~~i 304 (465)
-++.+|.+++= + .-.++||+|+++|++.-+.+|..+.. ..+++||+++|..+..-|.- ++.+.+|+|
T Consensus 390 ~ep~AAglaaLTeDE~eLGvaiIDmGGGTTd~sVf~~G~lv~a---~~ip~gG~~VT~DIA~~Lgt-----~d~~~AErI 461 (610)
T 2d0o_A 390 AEAEAAILGALTTPGTTRPLAILDLGAGSTDASIINPKGDIIA---THLAGAGDMVTMIIARELGL-----EDRYLAEEI 461 (610)
T ss_dssp EHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECTTCCEEE---EEEECSHHHHHHHHHHHHTC-----CCHHHHHHH
T ss_pred ccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEEEE---EEeccchHHHHHHHHHHhCC-----CCHHHHHHh
Confidence 67777777773 2 34589999999999999999998765 66899999999999988864 237899999
Q ss_pred HHhccccc
Q 012369 305 KEKLCYVA 312 (465)
Q Consensus 305 Ke~~c~v~ 312 (465)
|. ++...
T Consensus 462 K~-YG~A~ 468 (610)
T 2d0o_A 462 KK-YPLAK 468 (610)
T ss_dssp HH-SCEEE
T ss_pred cc-cCcee
Confidence 99 66543
No 30
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.72 E-value=2.1e-05 Score=80.11 Aligned_cols=50 Identities=20% Similarity=0.459 Sum_probs=47.4
Q ss_pred ccccCCcHHHHHHHHhccChHhhHhhhccchhhhhhccChHHHHHHHhhc
Q 012369 36 GAFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQHQ 85 (465)
Q Consensus 36 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 85 (465)
-.++.||.+++++|+++|.|.|++|++.|||.|+.++.|+.||+.++++.
T Consensus 17 d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~ 66 (445)
T 2ovr_B 17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEE 66 (445)
T ss_dssp STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTT
T ss_pred ChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeec
Confidence 46899999999999999999999999999999999999999999998764
No 31
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.61 E-value=2.6e-05 Score=79.45 Aligned_cols=51 Identities=16% Similarity=0.451 Sum_probs=47.3
Q ss_pred ccccCCcHHHHHHHHhccChHhhHhhhccchhhhhhccC-hHHHHHHHhhcC
Q 012369 36 GAFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSD-NRLWIFFLQHQQ 86 (465)
Q Consensus 36 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~w~~~~~~~~ 86 (465)
-.+..||.+++++|+++|.|.|++|.+.+||.|+.++.| +.||+.+++++.
T Consensus 13 d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~~ 64 (464)
T 3v7d_B 13 DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISEN 64 (464)
T ss_dssp CHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccc
Confidence 357889999999999999999999999999999999999 999999997743
No 32
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.61 E-value=1.2e-05 Score=81.91 Aligned_cols=50 Identities=20% Similarity=0.384 Sum_probs=47.4
Q ss_pred cccCCcHH----HHHHHHhccChHhhHhhhccchhhhhhccChHHHHHHHhhcC
Q 012369 37 AFDQIPWD----VLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQHQQ 86 (465)
Q Consensus 37 ~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 86 (465)
.++.||.+ ++++|+++|.+.|++|++.|||.|+.++.|+.||+.+++++.
T Consensus 10 ~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~ 63 (435)
T 1p22_A 10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMV 63 (435)
T ss_dssp HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHH
T ss_pred hHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhc
Confidence 47889999 999999999999999999999999999999999999998864
No 33
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.76 E-value=0.00047 Score=67.49 Aligned_cols=46 Identities=30% Similarity=0.519 Sum_probs=42.2
Q ss_pred ccccCCcHHHHHHHHhccChHhhHhhhccchhhhhhccChHHHHHH
Q 012369 36 GAFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFF 81 (465)
Q Consensus 36 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 81 (465)
..++.||.|++.+|+++|+..|++|.+.+||.|+.++.|+.+|+.+
T Consensus 7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l 52 (336)
T 2ast_B 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (336)
T ss_dssp CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEE
T ss_pred CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheee
Confidence 5689999999999999999999999999999999999988877543
No 34
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=96.61 E-value=0.0014 Score=63.02 Aligned_cols=48 Identities=25% Similarity=0.404 Sum_probs=40.1
Q ss_pred cccCceEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhh
Q 012369 382 AWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVG 439 (465)
Q Consensus 382 ~l~~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsila 439 (465)
...+.|+|+||.+..|+++++|++++. .+++.|+++.+..=+||+++|
T Consensus 205 ~~~~~vvl~GGva~n~~lr~~l~~~~g----------~~~~~p~~p~~~~A~GAAl~A 252 (276)
T 4ehu_A 205 GVQRNVVMVGGVARNSGIVRAMAREIN----------TEIIVPDIPQLTGALGAALYA 252 (276)
T ss_dssp CCCSSEEEESGGGGCHHHHHHHHHHHT----------SCEECCSSGGGHHHHHHHHHH
T ss_pred ccCCeEEEecCccchHHHHHHHHHHHC----------CCeeeCCCcchHHHHHHHHHH
Confidence 445789999999999999999998873 456677788888779999987
No 35
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*
Probab=95.71 E-value=0.038 Score=54.40 Aligned_cols=60 Identities=25% Similarity=0.133 Sum_probs=43.8
Q ss_pred ccCCeEEEeecchHHHHh-------cC-CCceEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHH
Q 012369 221 LNVPAVCAINQATLALYA-------AK-RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYL 284 (465)
Q Consensus 221 ~~vpav~~~~~~vlalya-------~g-~~tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L 284 (465)
.|++ +.++...-=|.|+ .+ ..+++|||||+++|.++-.-+|.+... ..+++|+..+++.+
T Consensus 110 ~G~~-i~vIsg~eEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~~~---~Sl~~G~v~l~e~~ 177 (315)
T 1t6c_A 110 VGLV-VEVITPEQEGRYAYLAVAYSLKPEGEVCVVDQGGGSTEYVFGKGYKVREV---ISLPIGIVNLTETF 177 (315)
T ss_dssp TCCC-EEECCHHHHHHHHHHHHHHHTCCCSEEEEEEEETTEEEEEEEETTEEEEE---EEECCCHHHHHHHH
T ss_pred HCCC-EEEcCHHHHHHHHHHHHHhhcccCCCEEEEEeCCCcEEEEEEeCCceeeE---EEEeccHHHHHHHh
Confidence 7774 5666543322222 23 567999999999999998878877543 67999999999875
No 36
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=95.49 E-value=0.58 Score=45.35 Aligned_cols=69 Identities=19% Similarity=0.250 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhcCCCCccccccccCceEEecCCCC-ccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhh
Q 012369 361 LDQAVALCMDHCHYAELSGDDAWFKTVILTGGSAC-LPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVG 439 (465)
Q Consensus 361 L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~-ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsila 439 (465)
|..+|...+..+++ + .|+|.||.+. .+-|.+++++.+...........+++..+.....+.-+||..++
T Consensus 250 L~~~i~~l~~~l~p-~---------~IvlgGg~~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~l~ 319 (326)
T 2qm1_A 250 LGLATGNLGNTLNP-D---------SVVIGGGVSAAGEFLRSRVEKYFQEFTFPQVRNSTKIKLAELGNEAGVIGAASLA 319 (326)
T ss_dssp HHHHHHHHHHHHCC-S---------EEEEEESGGGGTHHHHHHHHHHHHHTSCHHHHTTSEEEECSSGGGHHHHHHHHHG
T ss_pred HHHHHHHHHHhcCC-C---------EEEEcChhhhchHHHHHHHHHHHHHhhhhccCCCcEEEEcCcCchHHHHHHHHHH
Confidence 45555555555554 2 4889998875 57788899988877654321113566555445667888998876
No 37
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=95.17 E-value=0.041 Score=54.16 Aligned_cols=60 Identities=17% Similarity=0.276 Sum_probs=43.1
Q ss_pred ccCCeEEEee---cchHHHHhc----C--CCceEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHH
Q 012369 221 LNVPAVCAIN---QATLALYAA----K--RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYL 284 (465)
Q Consensus 221 ~~vpav~~~~---~~vlalya~----g--~~tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L 284 (465)
.|++ +.++. ++-++.+|. . ..+++|+|||.++|.++-+-+|.+... ..+++|.-.+++.+
T Consensus 102 tG~~-i~vIsG~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~---~Sl~lG~vrl~e~f 170 (315)
T 3mdq_A 102 VNID-VEVIDGAREAELIFRGVQQAVPMEDHISLAMDIGGGSVEFIIGNKNEILWK---QSFEIGGQRLIDRF 170 (315)
T ss_dssp HCCC-EEECCHHHHHHHHHHHHHHHSCCTTCCEEEEEECSSCEEEEEECSSCEEEE---EEESCCHHHHHHHS
T ss_pred HCCC-eEEeCHHHHHHHHHHHHHhcCCCCCCCEEEEEeCCCceEEEEEECCeEeee---EEEechhhHHHHHh
Confidence 7774 55654 333333322 2 357899999999999999888877654 77999998888754
No 38
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Probab=94.98 E-value=0.084 Score=55.41 Aligned_cols=59 Identities=19% Similarity=0.270 Sum_probs=42.9
Q ss_pred ccCCeEEEeec---chHHHHhc----CCCceEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHH
Q 012369 221 LNVPAVCAINQ---ATLALYAA----KRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGY 283 (465)
Q Consensus 221 ~~vpav~~~~~---~vlalya~----g~~tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~ 283 (465)
.|++ +.+++. +-+...|. ....++|||||+++|.++-+-+|.+... ..+++|.-.+++.
T Consensus 113 tG~~-ievIsG~EEA~l~~~gv~~~~~~~~~lvvDIGGGStEl~~~~~~~~~~~---~Sl~lG~vrl~e~ 178 (508)
T 3hi0_A 113 LGCE-IEVLSGEKEALYSAYGVISGFYQPDGIAGDLGGGSLELIDIKDKSCGEG---ITLPLGGLRLSEQ 178 (508)
T ss_dssp HTSC-EEECCHHHHHHHHHHHHHHHSSSCEEEEEEECSSCEEEEEEETTEECCC---EEESCCHHHHHHH
T ss_pred HCCC-eEEecHHHHHHHHHHHHHhcCCCCCeEEEEeCCCceEEEEeeCCeeeeE---EEecceEEehhhc
Confidence 7874 666653 33333332 3457899999999999998888887654 7799999888874
No 39
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}
Probab=94.90 E-value=0.052 Score=54.10 Aligned_cols=62 Identities=26% Similarity=0.282 Sum_probs=41.6
Q ss_pred ccCCeEEEee---cchHHHHhc----CC----CceEEEeecCceeEEEEEee--Ceee--ccccEEEEeccHHHHHHHH
Q 012369 221 LNVPAVCAIN---QATLALYAA----KR----TSGIVVNIGFQVTSVVPILH--GKVM--RKVGVEVMGLGALKLTGYL 284 (465)
Q Consensus 221 ~~vpav~~~~---~~vlalya~----g~----~tglVVDiG~~~T~v~PV~d--G~vl--~~~~~~~~~iGG~~lt~~L 284 (465)
.|++ +.+++ ++.++..|. .. ..++|||||+++|.++-+.+ +.+. .. ....+++|+..+++.+
T Consensus 115 tGi~-ieVIsG~eEA~l~~~gv~~~~~~~~~~~~~lviDIGGGStel~~~~~~~~~~~~~~~-~~~SlplG~v~lt~~~ 191 (343)
T 3cer_A 115 LGVR-PEVIPGTEEADLSFLGATSVVNRDDLPAPYLVVDLGGGSTELVIGGDGVSAPTTQVQ-GAFSMNIGSVRMTERH 191 (343)
T ss_dssp HSSC-CEECCHHHHHHHHHHHHHSSCCTTTCCSSEEEEEECSSCEEEEECCCSSSSCTTSCS-EEEEESCCHHHHHHHT
T ss_pred HCCC-EEEeCHHHHHHHHHHHHHhhCccccccCCEEEEEeCCCceEEEEeecCccCcccccc-eeEEEehhHHHHHHHh
Confidence 7774 55554 344444443 22 56899999999999997666 3321 01 2467899999999875
No 40
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=94.88 E-value=2 Score=41.72 Aligned_cols=70 Identities=16% Similarity=0.167 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhcCCCCccccccccCceEEecCCCCc-cchHHHHHHHHHhcCC-CCCCCceEEeCCCCCcchhhhhhHHh
Q 012369 361 LDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACL-PGLAERLEKELRGLLP-SSISNGIRVIPPPYGADTAWFGAKLV 438 (465)
Q Consensus 361 L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~i-pGl~eRL~~EL~~l~p-~~~~~~v~v~~~~~~~~~aW~Ggsil 438 (465)
|...|.+.+..+++ + .|||.||.+.. +-|.++|++.+.+... ......++|....-...+.-+||+.+
T Consensus 240 La~~i~~l~~~l~p-~---------~IvlgGgi~~~~~~l~~~l~~~l~~~~~~~~~~~~~~i~~s~l~~~a~l~GAa~l 309 (321)
T 3vgl_A 240 AGAGLADLASLFDP-S---------AFIVGGGVSDEGELVLDPIRKSFRRWLIGGEWRPHAQVLAAQLGGKAGLVGAADL 309 (321)
T ss_dssp HHHHHHHHHHHHCC-S---------EEEEESGGGGGTHHHHHHHHHHHHHHCTTGGGSCCCEEEECTTGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-C---------EEEEeChhhcchHHHHHHHHHHHHHhcccccccCCCEEEECCCCCcHHHHHHHHH
Confidence 45556566555555 2 38888888765 4468888888887664 22223467776665677888998877
Q ss_pred hc
Q 012369 439 GN 440 (465)
Q Consensus 439 as 440 (465)
+.
T Consensus 310 ~~ 311 (321)
T 3vgl_A 310 AR 311 (321)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 41
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5
Probab=94.53 E-value=0.019 Score=55.17 Aligned_cols=61 Identities=30% Similarity=0.455 Sum_probs=40.7
Q ss_pred cCceEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcCCCCCccccccHHHHH
Q 012369 384 FKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNLSTFPGAWCATKKQFR 456 (465)
Q Consensus 384 ~~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl~tf~~~w~ITk~eY~ 456 (465)
.+.|+++||.++.+++.+++.+.|. .+|..++.+.+..=+||+++|....-...| +..+|+
T Consensus 209 ~~~i~~~GG~a~n~~~~~~~~~~lg----------~~v~~p~~~~~~~AlGAAl~A~~~~~~~~~--~~~~~~ 269 (270)
T 1hux_A 209 VKDVVMTGGVAQNYGVRGALEEGLG----------VEIKTSPLAQYNGALGAALYAYKKAAKSAW--SHPQFE 269 (270)
T ss_dssp CSSEEEESGGGGCHHHHHHHHHHHC----------SCEECCGGGGGHHHHHHHHHHHHHTTC-----------
T ss_pred CCeEEEeCccccCHHHHHHHHHHHC----------CCeEeCCCcchHhHHHHHHHHHHhhhcccc--cCcccc
Confidence 4679999999999999999999885 345556667777779999998653334556 444443
No 42
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=94.36 E-value=0.076 Score=52.40 Aligned_cols=26 Identities=35% Similarity=0.704 Sum_probs=23.8
Q ss_pred CceEEEeecCceeEEEEEeeCeeecc
Q 012369 242 TSGIVVNIGFQVTSVVPILHGKVMRK 267 (465)
Q Consensus 242 ~tglVVDiG~~~T~v~PV~dG~vl~~ 267 (465)
.++++||||..+|+|+||.+|.++..
T Consensus 127 ~~~llvDIGsTTTDIipi~~G~pl~g 152 (334)
T 3cet_A 127 ENCILVDMGSTTTDIIPIVEGKVVAE 152 (334)
T ss_dssp SSEEEEEECSSCEEEEEEETTEECCC
T ss_pred CCEEEEEcCcchhhhhhhcCCeeccc
Confidence 67999999999999999999999654
No 43
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Probab=94.09 E-value=0.29 Score=51.36 Aligned_cols=60 Identities=18% Similarity=0.195 Sum_probs=42.5
Q ss_pred ccCCeEEEeec---chHHHHhc----CC-CceEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHH
Q 012369 221 LNVPAVCAINQ---ATLALYAA----KR-TSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYL 284 (465)
Q Consensus 221 ~~vpav~~~~~---~vlalya~----g~-~tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L 284 (465)
.|+ .+.+++. +-++..|. .. ..++|||||+++|.++-.-+|.+.. ...+++|.-.+++.+
T Consensus 109 tG~-~i~vIsG~eEA~l~~~gv~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~---~~Sl~lG~vrlte~f 176 (513)
T 1u6z_A 109 IPY-PIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPIL---VESRRMGCVSFAQLY 176 (513)
T ss_dssp CSS-CEEECCHHHHHHHHHHHHHHHSCCCSCEEEEEECSSCEEEEEEETTEEEE---EEEESCCHHHHHHHH
T ss_pred HCC-CEEEeCHHHHHHHHHHHHHhhccCCCCEEEEEECCCcEEEEEEeCCeeeE---EEEEeccHHHHHHHH
Confidence 777 4566653 33333332 22 3799999999999999877777654 367999999998765
No 44
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=93.65 E-value=0.15 Score=49.54 Aligned_cols=49 Identities=16% Similarity=0.065 Sum_probs=40.3
Q ss_pred CceEEecC-CCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 012369 385 KTVILTGG-SACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (465)
Q Consensus 385 ~NIvLtGG-~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (465)
++|+++|| .+..|++.++|.+.+... +.+++.++++++..=+||.++++
T Consensus 238 ~~Vvf~Gg~l~~n~~l~~~l~~~~~~~-------~~~~~~p~~~~~~gAlGAaL~~~ 287 (287)
T 2ews_A 238 ENIVYIGSSFHNNALLRKVVEDYTVLR-------GCKPYYVENGAFSGAIGALYLEK 287 (287)
T ss_dssp CEEEEESGGGTTCHHHHHHHHHHHHHT-------TCEEEECTTGGGHHHHHHHHTCC
T ss_pred CeEEEeCCchhcCHHHHHHHHHHHhhC-------CceEEECCCccHHHHHHHHHhCC
Confidence 47999999 999999999999876542 26777788889998899998763
No 45
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}
Probab=92.64 E-value=0.93 Score=44.11 Aligned_cols=69 Identities=14% Similarity=0.225 Sum_probs=47.0
Q ss_pred HHHHHHHHHhhcCCCCccccccccCceEEecCCCCc-cchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhh
Q 012369 361 LDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACL-PGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVG 439 (465)
Q Consensus 361 L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~i-pGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsila 439 (465)
|...|.+.+.-+++ + .|||.||.+.. +-|.+++++++.+.........++|..+.....+.-+||+.++
T Consensus 248 La~~i~~l~~~ldP-~---------~IvlgG~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~~s~l~~~a~~~GAa~l~ 317 (321)
T 3r8e_A 248 IGESLVNIVRVMDL-N---------NILLGGGISGAFDYFVPNLKKAMLEHLPTYYTDDMYIGKATLENDAGLLGAAGLI 317 (321)
T ss_dssp HHHHHHHHHHHHCC-C---------EEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECSSGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC-C---------EEEEeChhcccchHHHHHHHHHHHHhcccccCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 45555555555554 2 38888888765 6688899998887764322224677766666778889998875
No 46
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=92.53 E-value=0.048 Score=57.30 Aligned_cols=35 Identities=26% Similarity=0.444 Sum_probs=29.6
Q ss_pred cccCCcHHHHHHHHhccC-hHhhHhhhccchhhhhh
Q 012369 37 AFDQIPWDVLIQIVKLIG-PKEAAKLCVVSKSWRAL 71 (465)
Q Consensus 37 ~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~ 71 (465)
.++.||.||+.+|+++|. ..|++|.+++||.|+.+
T Consensus 5 ~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 5 IALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp -----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred chhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 478999999999999999 99999999999999998
No 47
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}
Probab=92.27 E-value=8.1 Score=36.86 Aligned_cols=66 Identities=9% Similarity=0.066 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhcCCCCccccccccCceEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 012369 361 LDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (465)
Q Consensus 361 L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (465)
|...|.+.+.-+++ + .|||.||.+..+.|.+++++.+...... .++|..+.....+.-+||..++-
T Consensus 225 La~~i~~l~~~~~p-~---------~IvlgGgi~~~~~~~~~l~~~l~~~~~~----~~~i~~s~lg~~a~~~GAa~l~~ 290 (297)
T 4htl_A 225 ICTGLYNLIYLFDP-T---------HIFIGGGITSRPTFIAELKHHMESFGLR----DTIIETATHKNQAGLLGAVYHFL 290 (297)
T ss_dssp HHHHHHHHHHHHCC-S---------EEEEESGGGGSTTHHHHHHHHHTTTCCT----TCEEEECSCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-C---------EEEEeCcccccHHHHHHHHHHHHHhccC----CCeEEECCcCChHHHHhHHHHHH
Confidence 55556666655555 2 3899999888888999999999765432 35666665566788899887653
No 48
>3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A*
Probab=92.22 E-value=0.81 Score=45.58 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=25.2
Q ss_pred CceEEEeecCceeEEEEEee--CeeeccccEEEEeccHH
Q 012369 242 TSGIVVNIGFQVTSVVPILH--GKVMRKVGVEVMGLGAL 278 (465)
Q Consensus 242 ~tglVVDiG~~~T~v~PV~d--G~vl~~~~~~~~~iGG~ 278 (465)
.+++|||+|+++|.++-... +.+... ....+++||.
T Consensus 140 ~t~~v~DiGGGStei~~~~~~~~~~~~~-~~~sl~lG~~ 177 (353)
T 3aap_A 140 KSVGVMDMGGASVQIVFPMPKNAEISKH-NQVELNIYGQ 177 (353)
T ss_dssp SCEEEEEECSSEEEEEEECCCCTTSCGG-GEEEEEETTE
T ss_pred ccEEEEEeCCCceEEEEecCCccccCCC-ceEEEEECCc
Confidence 46999999999999986644 333332 3466777764
No 49
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=91.85 E-value=8.1 Score=39.01 Aligned_cols=44 Identities=18% Similarity=0.327 Sum_probs=34.7
Q ss_pred ccCCeEEEeecchHHHHhc-------CCCceEEEeecCceeEEEEEeeCeeec
Q 012369 221 LNVPAVCAINQATLALYAA-------KRTSGIVVNIGFQVTSVVPILHGKVMR 266 (465)
Q Consensus 221 ~~vpav~~~~~~vlalya~-------g~~tglVVDiG~~~T~v~PV~dG~vl~ 266 (465)
+++| +++.+++-+++++- +..+.++|-+|.+. -..-|.+|.+..
T Consensus 208 ~~~p-V~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtGi-G~giv~~G~l~~ 258 (429)
T 1z05_A 208 TGLP-VFVANDTRAWALAEKLFGHSQDVDNSVLISIHHGL-GAGIVLDGRVLQ 258 (429)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSSE-EEEEEETTEECC
T ss_pred hCCC-EEEechhHHHHHHHHHhCCCCCCCcEEEEEECCcE-EEEEEECCEEee
Confidence 7887 88999999888763 45788999999874 466677888765
No 50
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=90.85 E-value=1.3 Score=42.15 Aligned_cols=45 Identities=22% Similarity=0.287 Sum_probs=36.2
Q ss_pred ccCCeEEEeecchHHHHhc-----CCCceEEEeecCceeEEEEEeeCeeecc
Q 012369 221 LNVPAVCAINQATLALYAA-----KRTSGIVVNIGFQVTSVVPILHGKVMRK 267 (465)
Q Consensus 221 ~~vpav~~~~~~vlalya~-----g~~tglVVDiG~~~T~v~PV~dG~vl~~ 267 (465)
+++| +++.+++-+++++- +..+.++|-+|.+. -..-|.+|.++..
T Consensus 94 ~~~p-v~v~NDa~aaa~~e~~~~~~~~~~v~l~~GtGi-G~giv~~G~l~~G 143 (292)
T 2gup_A 94 YQLP-VHLENDANCVGLSELLAHPELENAACVVIGTGI-GGAMIINGRLHRG 143 (292)
T ss_dssp GCCC-EEEEEHHHHHHHHHHHHCTTCSSEEEEEESSSE-EEEEEETTEEECC
T ss_pred cCCC-EEEechHHHHHHHHHHhcCCCCeEEEEEECCce-EEEEEECCEEEec
Confidence 8887 89999999998883 56789999999874 4556779987653
No 51
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}
Probab=90.79 E-value=12 Score=35.83 Aligned_cols=67 Identities=24% Similarity=0.258 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhcCCCCccccccccCceEEecCCC-Cc-cchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHh
Q 012369 361 LDQAVALCMDHCHYAELSGDDAWFKTVILTGGSA-CL-PGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLV 438 (465)
Q Consensus 361 L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S-~i-pGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsil 438 (465)
|...|.+.+.-+++ + .|+|.||.+ .. +-|.+++++++.+....... .+|..+.-...++-+||..+
T Consensus 225 l~~~i~~l~~~~~p-~---------~ivlgG~i~~~~~~~l~~~l~~~l~~~~~~~~~--~~i~~s~lg~~a~~~GAa~l 292 (302)
T 3vov_A 225 VGIGLASLVKAFDP-G---------VVVLGGGVALNAPEGYWEALLEAYRRYLQGWEA--PPLRRARLGAEAGLLGAALT 292 (302)
T ss_dssp HHHHHHHHHHHHCC-S---------EEEEESHHHHTSCHHHHHHHHHHHHHTTTTSCC--CCEEECSSGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC-C---------EEEEeChhHhhhhHHHHHHHHHHHHHhcchhcC--CcEEEcCCCCcHHHHHHHHH
Confidence 45555555555555 2 478888877 55 55899999999887654333 22444444567888898877
Q ss_pred h
Q 012369 439 G 439 (465)
Q Consensus 439 a 439 (465)
+
T Consensus 293 ~ 293 (302)
T 3vov_A 293 A 293 (302)
T ss_dssp H
T ss_pred H
Confidence 5
No 52
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=90.47 E-value=12 Score=37.34 Aligned_cols=45 Identities=20% Similarity=0.175 Sum_probs=35.1
Q ss_pred ccCCeEEEeecchHHHHhc-------CCCceEEEeecCceeEEEEEeeCeeecc
Q 012369 221 LNVPAVCAINQATLALYAA-------KRTSGIVVNIGFQVTSVVPILHGKVMRK 267 (465)
Q Consensus 221 ~~vpav~~~~~~vlalya~-------g~~tglVVDiG~~~T~v~PV~dG~vl~~ 267 (465)
+++| +++.+++-+++++- +..+.++|-+|.+ .-..-|.+|.++..
T Consensus 186 ~~~p-v~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtG-iG~giv~~G~l~~G 237 (406)
T 1z6r_A 186 TGVP-VYIQHDISAWTMAEALFGASRGARDVIQVVIDHN-VGAGVITDGHLLHA 237 (406)
T ss_dssp HSSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEEETTEETTT
T ss_pred HCCC-EEEechhHHHHHHHHHhcCCCCCCcEEEEEECCc-EEEEEEECCEEeec
Confidence 7888 88999998888763 3578899999987 45666789987653
No 53
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*
Probab=88.21 E-value=2.5 Score=42.10 Aligned_cols=75 Identities=8% Similarity=-0.087 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHhhcCCCCccccccccCceEEecC-CCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHH
Q 012369 359 MGLDQAVALCMDHCHYAELSGDDAWFKTVILTGG-SACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKL 437 (465)
Q Consensus 359 ~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG-~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsi 437 (465)
.+|..+|.+.|..... +..++.=.++|+++|| .+..|++.+.|++.|.-.-.. ++++.-++++++..=+||.+
T Consensus 283 ~gll~sVa~~I~~lA~--l~A~~~~i~~IvftGgfla~n~~~~~~L~~~l~~ws~g----~~~~~~~~~~~y~GAlGAaL 356 (360)
T 2i7n_A 283 RATLVTITNNIGSIAR--MCALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKG----QLKALFLEHEGYFGAVGALL 356 (360)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHTCCCEEEESGGGCSSSHHHHHHHHHHHHHTTT----SCCEEEETTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHHHcCCCeEEEeCcccccCHHHHHHHHHHHhhhhcC----CeeEEEcCCccHHHHHHHHH
Confidence 3566666666544421 0012223357999999 999999999999998632111 13455456678888899988
Q ss_pred hh
Q 012369 438 VG 439 (465)
Q Consensus 438 la 439 (465)
.+
T Consensus 357 ~~ 358 (360)
T 2i7n_A 357 EL 358 (360)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 54
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10
Probab=87.78 E-value=6.2 Score=38.07 Aligned_cols=45 Identities=20% Similarity=0.110 Sum_probs=34.9
Q ss_pred ccCCeEEEeecchHHHHhc-------CCCceEEEeecCceeEEEEEeeCeeecc
Q 012369 221 LNVPAVCAINQATLALYAA-------KRTSGIVVNIGFQVTSVVPILHGKVMRK 267 (465)
Q Consensus 221 ~~vpav~~~~~~vlalya~-------g~~tglVVDiG~~~T~v~PV~dG~vl~~ 267 (465)
+++| +.+.+++-+++++- +..+.++|-+|.+. -..-|.+|.+...
T Consensus 120 ~~~p-v~v~NDa~aaalgE~~~g~~~~~~~~v~l~~GtGi-G~giv~~G~l~~G 171 (327)
T 2ap1_A 120 LDRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTGV-GGGLVLNGKPITG 171 (327)
T ss_dssp HTSC-EEEEEHHHHHHHHHHTSTTGGGCSEEEEEEESSSE-EEEEEETTEEECC
T ss_pred HCCC-EEEecHHHHHHHHHHHhCcCCCCCcEEEEEECCcE-EEEEEECCEEeec
Confidence 7888 89999999988863 35688999999874 4556778887763
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=84.71 E-value=0.35 Score=50.63 Aligned_cols=32 Identities=25% Similarity=0.468 Sum_probs=31.0
Q ss_pred CCcHHHHHHHHhcc-ChHhhHhhhccchhhhhh
Q 012369 40 QIPWDVLIQIVKLI-GPKEAAKLCVVSKSWRAL 71 (465)
Q Consensus 40 ~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~ 71 (465)
.||.|++.+|+++| .+.|+++.+++||-|+.+
T Consensus 15 ~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 15 ATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred CCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 69999999999999 899999999999999988
No 56
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10
Probab=83.08 E-value=4.5 Score=38.24 Aligned_cols=66 Identities=18% Similarity=0.268 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhcCCCCccccccccCceEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhh
Q 012369 361 LDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVG 439 (465)
Q Consensus 361 L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsila 439 (465)
|..++...+..+++ + .|+|.||.+..+-|.+++++++.+.... . .+++..+.....++-+||..++
T Consensus 221 L~~~i~~l~~~l~p-~---------~ivlgG~~~~~~~~~~~l~~~l~~~~~~-~--~~~i~~~~~~~~a~~~GAa~l~ 286 (289)
T 2aa4_A 221 LARLIADIKATTDC-Q---------CVVVGGSVGLAEGYLALVETYLAQEPAA-F--HVDLLAAHYRHDAGLLGAALLA 286 (289)
T ss_dssp HHHHHHHHHHHHCC-S---------EEEEEHHHHTSTTHHHHHHHHHTTSCGG-G--CCEEEECSCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-C---------EEEEeCcccccHHHHHHHHHHHHHhcCc-c--CCEEEECCCCCchHHHHHHHHH
Confidence 45555555555554 2 3889998877788999999999775322 1 3556555445667888998775
No 57
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Probab=82.10 E-value=37 Score=32.67 Aligned_cols=44 Identities=18% Similarity=0.130 Sum_probs=34.3
Q ss_pred ccCCeEEEeecchHHHHhc-------CCCceEEEeecCceeEEEEEeeCeeec
Q 012369 221 LNVPAVCAINQATLALYAA-------KRTSGIVVNIGFQVTSVVPILHGKVMR 266 (465)
Q Consensus 221 ~~vpav~~~~~~vlalya~-------g~~tglVVDiG~~~T~v~PV~dG~vl~ 266 (465)
+++| +.+.+++-+++++- +..+.++|-+|.+ .-..-|.+|.+..
T Consensus 131 ~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~v~i~~GtG-iG~gii~~G~l~~ 181 (343)
T 2yhw_A 131 LHLP-VWVDNDGNCAALAERKFGQGKGLENFVTLITGTG-IGGGIIHQHELIH 181 (343)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHTSTTTTCSCEEEEEESSS-EEEEEEETTEECC
T ss_pred HCCC-EEEechhHHHHHHHHHhCCCCCCCcEEEEEECCC-EEEEEEECCEEec
Confidence 7887 88999998888763 3568899999987 4466677888765
No 58
>3cj1_A Ectonucleoside triphosphate diphosphohydrolase 2; alpha/beta protein, actin-like fold, alternative splicing, calcium, glycoprotein, magnesium; 1.70A {Rattus norvegicus} PDB: 3cj7_A* 3cj9_A* 3cja_A*
Probab=79.83 E-value=10 Score=38.89 Aligned_cols=22 Identities=9% Similarity=-0.059 Sum_probs=18.4
Q ss_pred CceEEEeecCceeEEEEEeeCe
Q 012369 242 TSGIVVNIGFQVTSVVPILHGK 263 (465)
Q Consensus 242 ~tglVVDiG~~~T~v~PV~dG~ 263 (465)
.+..|+|+|+++|.|+-.-+..
T Consensus 190 ~t~gvlDlGGgStqi~~~~~~~ 211 (456)
T 3cj1_A 190 GTLGAMDLGGASTQITFETTSP 211 (456)
T ss_dssp CCCEEEEECSSEEEEEEECCSC
T ss_pred CceEEEEcCCCceEEEeccCCc
Confidence 4679999999999999776654
No 59
>3zx3_A Ectonucleoside triphosphate diphosphohydrolase 1; domain rotation, purinergic signaling; 1.70A {Rattus norvegicus} PDB: 3zx2_A* 3zx0_A*
Probab=79.70 E-value=15 Score=37.55 Aligned_cols=134 Identities=13% Similarity=0.176 Sum_probs=65.8
Q ss_pred cEEEeCCcceEEE---EEecCC-CCCcccc----ccc------ccCCccchHHHHHHHHHHHHHhhccc-CCCCCCeEEE
Q 012369 127 SVIIDGGSGYCKF---GWSKYD-CPSGRTA----TFL------EFGNIESPMYSRLRHFFATIYSRMQV-KPSTQPIVVS 191 (465)
Q Consensus 127 ~VVID~GS~~~K~---Gfage~-~P~~~~~----s~~------~~G~~~~Pi~~~l~~~~~~~~~~L~v-~~~~~pVll~ 191 (465)
.||||.||..+|+ -|..+. .+..++. ..+ .+++...-+.+.++.+++...+..-. .-+..||.+.
T Consensus 36 ~iviDaGSsgtRl~VY~~~~~~~~~~~~~~~~~~~k~~gpGlSs~~~~p~~~~~~l~~Ll~~a~~~vp~~~~~~tpi~~~ 115 (452)
T 3zx3_A 36 GIVLDAGSSHTNLYIYKWPAEKENDTGVVQQLEECQVKGPGISKYAQKTDEIAAYLAECMKMSTERIPASKQHQTPVYLG 115 (452)
T ss_dssp EEEEEECSSCEEEEEEEEECCCTTCCCCCEEEEEEECSSSCGGGGTTCGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEEE
T ss_pred EEEEEcCCCCcEEEEEEEeCCcCCCccccceeeeecccCCChhccCCCHHHHHHHHHHHHHHHHHhCCHHHcCCccEEEE
Confidence 4999999999996 333321 1121111 011 12221122334555555543322110 1145677765
Q ss_pred ecCCCCCCccch---HHhHHHHHHHHHHHHhh--ccCCeEEEeecchHHH-------HhcCC------CceEEEeecCce
Q 012369 192 IPICHYDDTENA---KASRRQLKDCFQQVLFD--LNVPAVCAINQATLAL-------YAAKR------TSGIVVNIGFQV 253 (465)
Q Consensus 192 ep~~~~~~~~~~---~~~R~~~~e~l~e~lFE--~~vpav~~~~~~vlal-------ya~g~------~tglVVDiG~~~ 253 (465)
-..-.- ..+ ...++.+++.+.+.+-+ |.+..+.++...-=+. |..|. .+..|||+|+++
T Consensus 116 ATAgmR---~l~~~~~~~~~~il~~v~~~l~~~~f~~~~v~iisG~eEg~y~wi~vnyllg~l~~~~~~t~g~lDlGGgS 192 (452)
T 3zx3_A 116 ATAGMR---LLRMESKQSADEVLAAVSRSLKSYPFDFQGAKIITGQEEGAYGWITINYLLGRFKTPGGSTFGALDLGGAS 192 (452)
T ss_dssp ECHHHH---HHHHHCHHHHHHHHHHHHHHHHTSSSEEEEEEECCHHHHHHHHHHHHHHHTTTTC---CCCCEEEEECSSE
T ss_pred eeHHHh---hccccCHHHHHHHHHHHHHHHhhCCCCCCceEECCchhhhhhhHHHHHhhhccccCCCCCceEEEecCCCc
Confidence 321100 001 11345566666555432 3335677776433333 33342 567789999999
Q ss_pred eEEEEEeeCe
Q 012369 254 TSVVPILHGK 263 (465)
Q Consensus 254 T~v~PV~dG~ 263 (465)
|+|+=..++.
T Consensus 193 tQi~f~~~~~ 202 (452)
T 3zx3_A 193 TQITFVPLNS 202 (452)
T ss_dssp EEEEECCSSC
T ss_pred eEEEeccCCC
Confidence 9998665553
No 60
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A
Probab=73.39 E-value=31 Score=32.09 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=16.1
Q ss_pred cEEEeCCcceEEEEEecCC
Q 012369 127 SVIIDGGSGYCKFGWSKYD 145 (465)
Q Consensus 127 ~VVID~GS~~~K~Gfage~ 145 (465)
-++||+|--++|+|+-.++
T Consensus 5 ~L~IDIGNT~ik~gl~~~~ 23 (249)
T 3bex_A 5 YLLVDVGNTHSVFSITEDG 23 (249)
T ss_dssp EEEEEECSSEEEEEEESSS
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 3889999999999987544
No 61
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}
Probab=70.26 E-value=46 Score=31.38 Aligned_cols=18 Identities=17% Similarity=0.243 Sum_probs=15.6
Q ss_pred EEEeCCcceEEEEEecCC
Q 012369 128 VIIDGGSGYCKFGWSKYD 145 (465)
Q Consensus 128 VVID~GS~~~K~Gfage~ 145 (465)
++||+|--++|+|+-.++
T Consensus 3 L~IDIGNT~ik~gl~~~~ 20 (268)
T 2h3g_X 3 FVLDVGNTNAVLGVFEEG 20 (268)
T ss_dssp EEEEECSSEEEEEEEETT
T ss_pred EEEEECcCcEEEEEEECC
Confidence 789999999999987544
No 62
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}
Probab=66.41 E-value=50 Score=31.09 Aligned_cols=19 Identities=26% Similarity=0.073 Sum_probs=16.3
Q ss_pred cEEEeCCcceEEEEEecCC
Q 012369 127 SVIIDGGSGYCKFGWSKYD 145 (465)
Q Consensus 127 ~VVID~GS~~~K~Gfage~ 145 (465)
-++||+|--++|+|+-.++
T Consensus 4 lL~IDIGNT~iK~gl~d~~ 22 (266)
T 3djc_A 4 ILCIDVGNSHIYGGVFDGD 22 (266)
T ss_dssp EEEEEECSSEEEEEEEETT
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 4899999999999987554
No 63
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Probab=62.90 E-value=10 Score=36.68 Aligned_cols=68 Identities=19% Similarity=0.183 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhcCCCCccccccccCceEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhh
Q 012369 361 LDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVG 439 (465)
Q Consensus 361 L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsila 439 (465)
|...|.+.+.-+++ + .|+|.||.+..+-|.+++++++.+...... ..++|..+.-...+.-+||+.++
T Consensus 257 La~~i~~l~~~l~p-~---------~IvlgGgi~~~~~l~~~l~~~l~~~~~~~~-~~~~i~~s~lg~~a~~~GAa~l~ 324 (327)
T 4db3_A 257 LAICFGNIFTANDP-H---------VVALGGGLSNFELIYEEMPKRVPKYLLSVA-KCPKIIKAKHGDSGGVRGAAFLN 324 (327)
T ss_dssp HHHHHHHHHHHHCC-S---------EEEEESGGGGCTHHHHHHHHHGGGGSCTTC-CCCEEEECSCGGGHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCC-C---------EEEEeCcccchHHHHHHHHHHHHHHhcccc-CCCEEEECCCCCcHHHHHHHHHH
Confidence 45555555555554 2 488999988888888899988877654332 24667666656678888998765
No 64
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural GENO protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A 3ohr_A* 3lm9_A*
Probab=53.89 E-value=18 Score=34.67 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=47.0
Q ss_pred HHHHHHHHHhhcCCCCccccccccCceEEecCCCCccchHHHHHHHHHhcCCCCCC-------CceEEeCCCCCcchhhh
Q 012369 361 LDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSIS-------NGIRVIPPPYGADTAWF 433 (465)
Q Consensus 361 L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~~~-------~~v~v~~~~~~~~~aW~ 433 (465)
|...|.+.+.-+++ | .|||.||.+..+-|.+++++++.+....... .++.+..+.-...+.-+
T Consensus 212 La~~i~nl~~~ldP-e---------~IviGGgi~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~I~~s~lg~~a~l~ 281 (302)
T 3epq_A 212 IAQALAQYILILAP-X---------XIILGGGVMQQXQVFSYIYQYVPKIMNSYLDFSELSDDISDYIVPPRLGSNAGII 281 (302)
T ss_dssp HHHHHHHHHHHTCC-S---------CEEEESSGGGCTHHHHHHHHHHHHHHTTCSCCGGGTTTGGGTEECCTTGGGHHHH
T ss_pred HHHHHHHHHHHHCc-h---------hhhcCchhhhhHHHHHHHHHHHHHHHhhhccCcccccccCceEEECCcCChHHHH
Confidence 56666666666666 3 3888888887766888888888776532211 02346666556778889
Q ss_pred hhHHhh
Q 012369 434 GAKLVG 439 (465)
Q Consensus 434 Ggsila 439 (465)
||..++
T Consensus 282 GAa~l~ 287 (302)
T 3epq_A 282 GTLVLA 287 (302)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998875
No 65
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5
Probab=52.61 E-value=1.4e+02 Score=27.81 Aligned_cols=128 Identities=14% Similarity=0.014 Sum_probs=66.8
Q ss_pred cEEEeCCcceEEEEEecCCCCCcccccccccCCccc-hHHHHHHHHHHHHHhhcccCCCC-CCeEEEecCCCCCCccchH
Q 012369 127 SVIIDGGSGYCKFGWSKYDCPSGRTATFLEFGNIES-PMYSRLRHFFATIYSRMQVKPST-QPIVVSIPICHYDDTENAK 204 (465)
Q Consensus 127 ~VVID~GS~~~K~Gfage~~P~~~~~s~~~~G~~~~-Pi~~~l~~~~~~~~~~L~v~~~~-~pVll~ep~~~~~~~~~~~ 204 (465)
.+-||+|.-.||++... +- +........-.+... ...+.++.+.+.+-+.++..+.+ ..|-+..|-..+
T Consensus 2 ~lgiDiGGT~~~~~l~d-~g-~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~i~~igig~pG~~~------- 72 (291)
T 1zbs_A 2 ILIGDSGSTKTDWCIAK-EG-KSLGRFQTSGINPFQQDRNEIDTALRSEVLPAIGQKASSIRAVYFYGAGCTP------- 72 (291)
T ss_dssp EEEEEECSSEEEEEEEE-TT-EEEEEEEEECCCTTTSCHHHHHHHHTTTTHHHHTTSTTTCCEEEEEETTCCT-------
T ss_pred EEEEEeCccceEEEEEe-CC-eEEEEEECCCCCcccCCHHHHHHHHHHHHHHHhCCCcccccEEEEECCCCCh-------
Confidence 37899999999999875 31 111110000011111 11222222222211222222222 124555554321
Q ss_pred HhHHHHHHHHHHHHhhccC-CeEEEeecchHHHHh-cCCCceEEEeecCceeEEEEEeeCeeec
Q 012369 205 ASRRQLKDCFQQVLFDLNV-PAVCAINQATLALYA-AKRTSGIVVNIGFQVTSVVPILHGKVMR 266 (465)
Q Consensus 205 ~~R~~~~e~l~e~lFE~~v-pav~~~~~~vlalya-~g~~tglVVDiG~~~T~v~PV~dG~vl~ 266 (465)
.....+.+.+-+. ++. -.+.+.+++.+++++ .|..++++|=+|.+.--..-+.+|+...
T Consensus 73 ~~~~~l~~~l~~~---~~~~~pv~v~NDa~~aa~ge~g~~~~v~v~~GTGigg~~i~~~G~~~~ 133 (291)
T 1zbs_A 73 AKAPMLNEALDSM---LPHCDRIEVAGDMLGAARALCGDSEGIACILGTGSNSCLFDGREIKAN 133 (291)
T ss_dssp TTHHHHHHHHHHH---STTCSEEEEECHHHHHHHHHTTTSCEEEEEESSSEEEEEECSSSEEEE
T ss_pred HHHHHHHHHHHHh---cCCCCcEEEeCcHHHHHHhhcCCCCcEEEEecCChheEEECCCCcEEE
Confidence 1112344444443 664 359999999999998 4678889988987774444456888754
No 66
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=52.32 E-value=5.8 Score=31.70 Aligned_cols=47 Identities=13% Similarity=0.304 Sum_probs=27.4
Q ss_pred CcHHHHHHHHhccChHhhHhhhccchhhhhhccChHHHHHHHhhcCCCC
Q 012369 41 IPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQHQQEPW 89 (465)
Q Consensus 41 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 89 (465)
.|.+++--|+...+|..+.|+=-.|.. -+-..+.||+.|+.||-+.+
T Consensus 13 ~Py~lL~PVLek~tp~QL~~IE~~nP~--L~~dTdeLWk~~c~rdF~~~ 59 (97)
T 4hfx_A 13 VPYSVLEPVLERCTPDQLYRIEEYNHV--LIEETDQLWKVHCHRDFKEE 59 (97)
T ss_dssp -------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCS
T ss_pred CcHHHHHHHHccCCHHHHHHHHHhCcc--cchhhHHHHHHHHHhHCccc
Confidence 488999999999999999999999983 46788999999999988544
No 67
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=43.97 E-value=28 Score=34.25 Aligned_cols=67 Identities=10% Similarity=0.106 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhcCCCCccccccccCceEEecCCCCc-cchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhh
Q 012369 361 LDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACL-PGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVG 439 (465)
Q Consensus 361 L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~i-pGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsila 439 (465)
|...+...+.-+++ + .|+|.||.+.. +-|.+++++.+....... ..++|........+.-+||..++
T Consensus 302 La~~i~~l~~~ldP-~---------~IvlgG~~~~~~~~l~~~l~~~l~~~~~~~--~~~~i~~s~~~~~a~~~GAa~l~ 369 (380)
T 2hoe_A 302 FSIGLLNLIHLFGI-S---------KIVIGGFFKELGENFLKKIKIEVETHLLYK--HSVDMSFSKVQEPVIAFGAAVHA 369 (380)
T ss_dssp HHHHHHHHHHHHCC-C---------EEEEEEGGGGGHHHHHHHHHHHHHHHCSSS--CCCEEEECCCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-C---------EEEEcCchhhhhHHHHHHHHHHHHHhcCCC--CCcEEEEcCCCCcHHHHHHHHHH
Confidence 45555555555554 2 48888888754 678888888887765432 23566555444567788988765
No 68
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Probab=42.53 E-value=59 Score=30.94 Aligned_cols=62 Identities=23% Similarity=0.235 Sum_probs=40.4
Q ss_pred ceEEecCCCCccc-hHHHHHHHHHhcCCC-CCCCceEEeCCCCCcchhhhhhHHhhcCCCCCcc
Q 012369 386 TVILTGGSACLPG-LAERLEKELRGLLPS-SISNGIRVIPPPYGADTAWFGAKLVGNLSTFPGA 447 (465)
Q Consensus 386 NIvLtGG~S~ipG-l~eRL~~EL~~l~p~-~~~~~v~v~~~~~~~~~aW~Ggsilasl~tf~~~ 447 (465)
.|||.||.+..+. +.++|.+.+++.+.. ....++++..+.-...+.-+||+.++--.-|.+-
T Consensus 242 ~IvlgG~v~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~s~lg~~ag~~GAa~la~~~~~~~p 305 (310)
T 3htv_A 242 AVILGGGVMDMPAFPRETLVAMTQKYLRRPLPHQVVRFIAASSSDFNGAQGAAILAHQRFLPQF 305 (310)
T ss_dssp EEEEECTTTTSTTCCHHHHHHHHHHTSCTTTTTTTCEEEECCCCTTHHHHHHHHHHHHHHCC--
T ss_pred EEEEeCchhccchhHHHHHHHHHHHHhhcccccCCcEEEEcCCCCcHHHHHHHHHHHHHhhccc
Confidence 3788888887654 477888888776532 1122477776665677889999988754444443
No 69
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*
Probab=41.69 E-value=2.3e+02 Score=26.75 Aligned_cols=118 Identities=13% Similarity=0.050 Sum_probs=62.2
Q ss_pred cEEEeCCcceEEEEEecCCCCCcccccccccCCc--cc--hHHHHHHHHHHHHHhhcccCCC-C-CCeEEEecCCCCCCc
Q 012369 127 SVIIDGGSGYCKFGWSKYDCPSGRTATFLEFGNI--ES--PMYSRLRHFFATIYSRMQVKPS-T-QPIVVSIPICHYDDT 200 (465)
Q Consensus 127 ~VVID~GS~~~K~Gfage~~P~~~~~s~~~~G~~--~~--Pi~~~l~~~~~~~~~~L~v~~~-~-~pVll~ep~~~~~~~ 200 (465)
.+.||+|...+|++....+- +..........+. .. .+++.+...++.+.+..+.++. + ..|-+..|-...
T Consensus 8 ~lgiDiGgt~~~~~l~d~~g-~i~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~i~gigi~~pG~vd--- 83 (347)
T 2ch5_A 8 YGGVEGGGTRSEVLLVSEDG-KILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQ--- 83 (347)
T ss_dssp EEEEEECTTCEEEEEEETTS-CEEEEEEECCCCHHHHCHHHHHHHHHHHHHHHHHHHTCCTTCCBSEEEEEETTTTC---
T ss_pred EEEEEcCccceEEEEEeCCC-CEEEEEeCCCCCcccCCHHHHHHHHHHHHHHHHHhcCCCcccceeEEEEeccCCCc---
Confidence 68899999999999875431 1111000000011 01 1233444444444444444332 1 234455554321
Q ss_pred cchHHhHHHHHHHHHHHHhhcc---CCeEEEeecchHHHHhcCCCceEEEeecCceeE
Q 012369 201 ENAKASRRQLKDCFQQVLFDLN---VPAVCAINQATLALYAAKRTSGIVVNIGFQVTS 255 (465)
Q Consensus 201 ~~~~~~R~~~~e~l~e~lFE~~---vpav~~~~~~vlalya~g~~tglVVDiG~~~T~ 255 (465)
......+.+.+-+. ++ .| +.+.+++-+++++....++++|-+|.+.--
T Consensus 84 ---~~~~~~l~~~l~~~---~~~~~~p-v~v~NDa~aaa~a~~~~~~v~v~~GTGig~ 134 (347)
T 2ch5_A 84 ---EDAGRILIEELRDR---FPYLSES-YLITTDAAGSIATATPDGGVVLISGTGSNC 134 (347)
T ss_dssp ---HHHHHHHHHHHHHH---CTTSBSC-EEEEEHHHHHHHHHCSSCEEEEEESSSEEE
T ss_pred ---hHHHHHHHHHHHHh---cCCCCce-EEEECcHHHHHHhhCCCCcEEEEEcCCcee
Confidence 11122333434333 65 54 889999999998864467889999876544
No 70
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=39.73 E-value=13 Score=25.34 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=15.4
Q ss_pred ccccCCcHHHHHHHHhccC
Q 012369 36 GAFDQIPWDVLIQIVKLIG 54 (465)
Q Consensus 36 ~~~~~~~~~~~~~i~~~~~ 54 (465)
--|.+||+|+|.-|++--+
T Consensus 19 eVF~~LP~dIQ~Ells~~~ 37 (48)
T 2kwv_A 19 EVFKQLPADIQEEILSGKS 37 (48)
T ss_dssp GGTTTSCHHHHHHHTTCCC
T ss_pred HHHHHCcHHHHHHHHhcch
Confidence 4599999999999886543
No 71
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Probab=35.61 E-value=2e+02 Score=28.14 Aligned_cols=50 Identities=22% Similarity=0.165 Sum_probs=35.7
Q ss_pred ceEEecCCCCccc-hHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 012369 386 TVILTGGSACLPG-LAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (465)
Q Consensus 386 NIvLtGG~S~ipG-l~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (465)
.|||+||.+...- |.+++++.+.... .+.|........+.-+||..++.-
T Consensus 298 ~IvlgGgi~~~~~~l~~~i~~~l~~~~------~~~i~~~~~~~~a~~~GAa~l~~~ 348 (381)
T 1saz_A 298 FIVLTGGLAHEKEFLVPWITKRVSFIA------PVLVFPGSNEEKALALSALRVLRG 348 (381)
T ss_dssp EEEEEEGGGGCTTTHHHHHHHHHTTTS------CEEEEEBCCHHHHHHHHHHHHHTT
T ss_pred EEEEeCcCccChHHHHHHHHHHHHhhc------CeEEEecCcchhHHHHHHHHHHcC
Confidence 5899999876655 8899999987653 256665544445777898877643
No 72
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Probab=35.37 E-value=2.2e+02 Score=27.02 Aligned_cols=44 Identities=20% Similarity=0.126 Sum_probs=34.0
Q ss_pred ccCCeEEEeecchHHHHhc-------CCCceEEEeecCceeEEEEEeeCeeec
Q 012369 221 LNVPAVCAINQATLALYAA-------KRTSGIVVNIGFQVTSVVPILHGKVMR 266 (465)
Q Consensus 221 ~~vpav~~~~~~vlalya~-------g~~tglVVDiG~~~T~v~PV~dG~vl~ 266 (465)
+++| +++.+++-+++++- +..+.++|-+|.+. -..-|.+|.++.
T Consensus 120 ~~~p-V~v~NDa~aaalgE~~~g~~~~~~~~~~l~~GtGi-G~gii~~G~l~~ 170 (327)
T 4db3_A 120 IGRS-VKIENDANCFALSEAWDEELQDAPSVMGLILGTGF-GGGLIYEGKVFS 170 (327)
T ss_dssp HSSC-CEEEEHHHHHHHHHHTSTTTTTCSEEEEEEESSSE-EEEEEETTEECC
T ss_pred HCCC-EEEecchhHHHHHHHHhCCCCCCCcEEEEEeCccc-eEEEEECCEEee
Confidence 8898 89999999888864 34677899999774 455577888765
No 73
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=35.33 E-value=2.9e+02 Score=26.72 Aligned_cols=44 Identities=18% Similarity=0.196 Sum_probs=34.3
Q ss_pred ccCCeEEEeecchHHHHhc---C--CCceEEEeecCceeEEEEEeeCeeec
Q 012369 221 LNVPAVCAINQATLALYAA---K--RTSGIVVNIGFQVTSVVPILHGKVMR 266 (465)
Q Consensus 221 ~~vpav~~~~~~vlalya~---g--~~tglVVDiG~~~T~v~PV~dG~vl~ 266 (465)
+++| +++.+++-+++++- | +.+.++|-+|.+. -..-|.+|.++.
T Consensus 188 ~~~p-V~v~NDanaaalaE~~~g~~~~~~v~l~~GtGi-G~giv~~G~l~~ 236 (380)
T 2hoe_A 188 YGIE-VWVENDADMGAVGEKWYTKRDDSFAWILTGKGI-GAGIIIDGELYR 236 (380)
T ss_dssp HCSE-EEEEEHHHHHHHHHHHHTTCCSCEEEEEESSSC-EEEEEETTEECC
T ss_pred hCCC-EEEechHHHHHHHHHHhCCCCCcEEEEEeCCce-EEEEEECCEEec
Confidence 7887 88999998887763 3 3789999999874 466678888755
No 74
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5
Probab=32.14 E-value=3.1e+02 Score=25.43 Aligned_cols=125 Identities=11% Similarity=0.117 Sum_probs=66.3
Q ss_pred cEEEeCCcceEEEEEecCCCCCcccccccccCCcc-ch--HHHHHHHHHHHHHhhcccCCCCC---CeEEEecCCCCCCc
Q 012369 127 SVIIDGGSGYCKFGWSKYDCPSGRTATFLEFGNIE-SP--MYSRLRHFFATIYSRMQVKPSTQ---PIVVSIPICHYDDT 200 (465)
Q Consensus 127 ~VVID~GS~~~K~Gfage~~P~~~~~s~~~~G~~~-~P--i~~~l~~~~~~~~~~L~v~~~~~---pVll~ep~~~~~~~ 200 (465)
.+.||+|...+|++....+- +..........+.. .| .++.+...++.+.+..+.++.+- .+-+..|-...
T Consensus 13 ~lGiDiGgT~i~~~l~d~~G-~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~i~~~~igig~pG~v~--- 88 (305)
T 1zc6_A 13 LIGVDGGGTGTRIRLHASDG-TPLAMAEGGASALSQGIAKSWQAVLSTLEAAFQQAGLPAAPASACAIGLGLSGVHN--- 88 (305)
T ss_dssp EEEEEECSSCEEEEEEETTC-CEEEEEEESCCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCCGGGEEEEEEESCCCT---
T ss_pred EEEEEcCccceEEEEEcCCC-CEEEEEeCCCCCcccCHHHHHHHHHHHHHHHHHhcCCChhhhccceEEEEecCCCc---
Confidence 68899999999999875431 11100000001111 11 23444444554455444444332 24555554321
Q ss_pred cchHHhHHHHHHHHHHHHhhc--cCCeEEEeecchHHHHhc-CCCceEEEeecCceeEEEEEeeCeeec
Q 012369 201 ENAKASRRQLKDCFQQVLFDL--NVPAVCAINQATLALYAA-KRTSGIVVNIGFQVTSVVPILHGKVMR 266 (465)
Q Consensus 201 ~~~~~~R~~~~e~l~e~lFE~--~vpav~~~~~~vlalya~-g~~tglVVDiG~~~T~v~PV~dG~vl~ 266 (465)
+... + . +-+. + +. .+.+.+++-+++++. +..++++|-+|.+..-..-+.+|....
T Consensus 89 --~~~~-~---~-l~~~---~~~~~-pv~v~NDa~aaa~ge~~~~~~v~v~~GTGigg~~i~~~G~~~~ 146 (305)
T 1zc6_A 89 --RQWA-G---E-FESQ---APGFA-RLSLATDGYTTLLGAHGGQPGIIVALGTGSIGEALYPDGSHRE 146 (305)
T ss_dssp --TSHH-H---H-HHHT---CCCCS-EEEEECHHHHHHHHHTTTSSEEEEEESSSEEEEEECTTSCEEE
T ss_pred --hHHH-H---H-HHHh---CCCCc-eEEEECCHHHHHHhhcCCCCeEEEEecCCeEEEEEeCCCcEEE
Confidence 1111 1 1 1111 5 34 489999999999984 567889999998864232223787543
No 75
>3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases, HSP70, actin superfamily, anhydro-N-actetylmuramic acid binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB: 3qbw_A*
Probab=30.91 E-value=23 Score=35.20 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.6
Q ss_pred CceEEecCCCCccchHHHHHHHH
Q 012369 385 KTVILTGGSACLPGLAERLEKEL 407 (465)
Q Consensus 385 ~NIvLtGG~S~ipGl~eRL~~EL 407 (465)
..|++|||++.-|-|.+||++.|
T Consensus 285 ~~v~vcGGGa~N~~Lm~~L~~~l 307 (371)
T 3qbx_A 285 EEVLVCGGGAFNTALMKRLAMLM 307 (371)
T ss_dssp CEEEEESGGGGCHHHHHHHHHHC
T ss_pred ceEEEECCccCcHHHHHHHHHhC
Confidence 45899999999999999998776
No 76
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}
Probab=29.78 E-value=48 Score=32.19 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=23.2
Q ss_pred cCceEEecCCCCccchHHHHHHHHHh
Q 012369 384 FKTVILTGGSACLPGLAERLEKELRG 409 (465)
Q Consensus 384 ~~NIvLtGG~S~ipGl~eRL~~EL~~ 409 (465)
.++|+|+||.+.-..+.++|.+++..
T Consensus 250 ~~~vvlsGGVa~N~~L~~~L~~~l~~ 275 (334)
T 3eno_A 250 KDEILMAGGVALNRRLRDMVTNMARE 275 (334)
T ss_dssp CSEEEEESSGGGCHHHHHHHHHHHHH
T ss_pred CCeEEEcCCHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999864
No 77
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A
Probab=28.96 E-value=61 Score=33.05 Aligned_cols=53 Identities=11% Similarity=0.162 Sum_probs=40.2
Q ss_pred ceEEecCCCCccchHHHHHHHHHhcCCCCC----CCceEEeCCCCCcchhhhhhHHhhcC
Q 012369 386 TVILTGGSACLPGLAERLEKELRGLLPSSI----SNGIRVIPPPYGADTAWFGAKLVGNL 441 (465)
Q Consensus 386 NIvLtGG~S~ipGl~eRL~~EL~~l~p~~~----~~~v~v~~~~~~~~~aW~Ggsilasl 441 (465)
.|.+-||....|+|.+++++.++.+++... ..+|++.... ..+=+||+++|.+
T Consensus 386 ~V~vdGsv~~~p~f~~~l~~~l~~l~~~~~~~~~~~~v~~~~~~---dgsg~GAAl~aa~ 442 (457)
T 2yhx_A 386 HIAAXGSXRSYSGFSXNSATXNXNIYGWPQSAXXSKPIXITPAI---DGXGAASXVIXSI 442 (457)
T ss_dssp EEEEESTTTTSTTHHHHHHHHHHHHHCCCCSSGGGSSEEEEECC---CTTTHHHHHHHHH
T ss_pred EEEEECCcccCchHHHHHHHHHHHhhCcccccccCcceEEEECC---CchhhhHHHHHHH
Confidence 578888887789999999999998875421 2357776654 3677899998864
No 78
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*
Probab=28.95 E-value=44 Score=32.06 Aligned_cols=74 Identities=11% Similarity=0.019 Sum_probs=41.7
Q ss_pred HHHHHHHHHhhcCCCCccccccccCceEEecCCCC-ccchHHHHHHHHHhcC--CCCC-CCceEEeCCCCCcchhhhhhH
Q 012369 361 LDQAVALCMDHCHYAELSGDDAWFKTVILTGGSAC-LPGLAERLEKELRGLL--PSSI-SNGIRVIPPPYGADTAWFGAK 436 (465)
Q Consensus 361 L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~-ipGl~eRL~~EL~~l~--p~~~-~~~v~v~~~~~~~~~aW~Ggs 436 (465)
|...|.+.+..+++ +... ..--..|+|.||.+. .+-|.+++++.+.+.. +... ...+.+... .. ++-+||.
T Consensus 245 La~~i~~l~~~~~p-~~~~-~~~~~~IvlgGgv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~--~~-a~~~GAa 319 (347)
T 2ch5_A 245 LGRHIVAVLPEIDP-VLFQ-GKIGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKL--RH-SSALGGA 319 (347)
T ss_dssp HHHHHHHHGGGSCG-GGGC-STTCEEEEEESGGGGGHHHHHHHHHHHHHHHC---CCCSCSEEEEEEE--SS-CTHHHHH
T ss_pred HHHHHHHHHHHhcc-cccc-cCCCceEEEECCcccCcHHHHHHHHHHHHhhccccccccCCceEEEec--CC-ChHHHHH
Confidence 55666666666665 3210 000014788888764 3677888888887764 2221 112333332 24 6778988
Q ss_pred Hhh
Q 012369 437 LVG 439 (465)
Q Consensus 437 ila 439 (465)
.++
T Consensus 320 ~la 322 (347)
T 2ch5_A 320 SLG 322 (347)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 79
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*
Probab=25.31 E-value=63 Score=31.18 Aligned_cols=26 Identities=31% Similarity=0.291 Sum_probs=23.4
Q ss_pred cCceEEecCCCCccchHHHHHHHHHh
Q 012369 384 FKTVILTGGSACLPGLAERLEKELRG 409 (465)
Q Consensus 384 ~~NIvLtGG~S~ipGl~eRL~~EL~~ 409 (465)
.++|+|+||.+.-..+.++|.+++..
T Consensus 245 ~~~vvlsGGVa~N~~l~~~l~~~l~~ 270 (330)
T 2ivn_A 245 KDEVVLVGGVAANNRLREMLRIMTED 270 (330)
T ss_dssp CSEEEEESGGGGCHHHHHHHHHHHHH
T ss_pred CCeEEEEccHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999998864
No 80
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Probab=23.96 E-value=84 Score=30.91 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=19.4
Q ss_pred ceEEEeecCceeEEEEEeeCeeecc
Q 012369 243 SGIVVNIGFQVTSVVPILHGKVMRK 267 (465)
Q Consensus 243 tglVVDiG~~~T~v~PV~dG~vl~~ 267 (465)
+.+++.+|.+. ....|.+|.++..
T Consensus 177 ~~v~~~lGtGi-G~g~i~~G~~~~G 200 (381)
T 1saz_A 177 NLVVAHMGGGI-SIAAHRKGRVIDV 200 (381)
T ss_dssp EEEEEEESSSE-EEEEEETTEEEEE
T ss_pred CEEEEEeCCCc-EEEEEECCEEEEe
Confidence 88999999776 6666889998764
No 81
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=20.56 E-value=58 Score=30.52 Aligned_cols=37 Identities=24% Similarity=0.395 Sum_probs=28.4
Q ss_pred ccCCeEEEeecchHHHHhcC-CCceEEEeecCceeEEEEEeeCe
Q 012369 221 LNVPAVCAINQATLALYAAK-RTSGIVVNIGFQVTSVVPILHGK 263 (465)
Q Consensus 221 ~~vpav~~~~~~vlalya~g-~~tglVVDiG~~~T~v~PV~dG~ 263 (465)
++. .+.+.+++-+++++.. ..++++|-+|.+. |.+|.
T Consensus 86 ~~~-pv~v~ND~~aaa~~e~~~~~~v~l~~GTG~-----i~~g~ 123 (299)
T 2e2o_A 86 IAP-KVIIQHDGVIALFAETLGEPGVVVIAGTGS-----VVEGY 123 (299)
T ss_dssp SSS-EEEEEEHHHHHHHHHHTTSCEEEEEESSSE-----EEEEE
T ss_pred CCC-CEEEeCcHHHHHhhccCCCCeEEEEecCCE-----EEEEE
Confidence 555 4788899999888763 5788999999883 55676
Done!